##maf version=1 scoring=roast.v3.3 a score=35231.000000 s mm10.chr1_GL456221_random 430 619 + 206961 TGGGGACTAGCTGTCTGCTCAGAGGTCAGAGAATTGGGGAATCCTCTCAGCTCAATGTCCAGGGCCTATGAGAAGAAGAAGGCAGTGGCTGCTGTCTGTG-AAGGAAGGACCTGTGTCATCTA---------------------------------TGCATCTCTCTCTTTATCCATTCCTTAGGTGATGGGCACCTAAGGTTGAGGGTGCTGGTTGCTCTGTCCCAGGACAGGTGCTCTGAGTCACATCCCTAGGATGCTCCTTAGAGGGAATCCATACTCCTCTCCATCCAATGTCTTAACTTAGCTGCTTCAAGTCATGGTGCAATAAACACAGGGGCTCAGGCATCTCTGCCATATGCTGCTGACATAGGGGCCATTTGCAGCTATATTTGCTTGttttcttttctttttctttttcttttttttttttttttgaggcagaattttatgtaacccaggttggcttccaacttactgtatagctgaggacaaccttgaacataagaacttcctgcctcttatctcctaggtgctggggttacaattacatgtcaaatgggttttatatagcacagggatggagcccaggattttgtgcctacccggcagactcagctctactaactgaactacacactcagtcTTTCAGT s rn5.chr9 92293406 596 + 121549591 TGGGAACTAGCT-TCTGTTCAGAGGTCCAAGGAGCGGGAAATCCTCTCAGCTCAATGCCCAGGGCCTGTGAGGAGAACAAGGCAGTGGCTGCCAACTGTGGAAGGAAGGACCTGTGTCATCTACTCCAGTTCCCTGGCATACCCTTTGAATCCTGCTGCACAGATCTCTTTATCTATGCCTTACTTGAATGGCACCTA-GGTTGAGGGTGCTATTTGCTCTGTACCAGGACAGAGGCTCTGAGTCACATCCCTAGGATGCTCCTT-------------------CTCCAGTCAGTGCCTTAACTTAGCCATCTCAAATCACGGATCAGTAAACACAGAGACACAGGCATCTCAGCAGTA--ATGCTGACTTAGGGGTCACTTGAAGATATATTTA-----------------------------TTTACttttttttgaggcagaattttatgtaacccagattggcttccaacttactgtatggctgaggacaaccttgagcataagatcttcctgcct-tcatttcctaggcgctggggttacaattacatgtcgagagggttttatatagcacagggatggagcccaggacttggtgcttacccagcagactcagctctaccaactaagctacaCA----GTCTTTCAGt i rn5.chr9 N 0 I 169 a score=0.000000 s mm10.chr1_GL456221_random 1049 326 + 206961 tcttcttcttttttaaaaaatatttatttatttattttatgtatatgagtacactgtagctgttcatatggttgtggaccttcatgtggttgttgggaattgaatttaggtcctctgCTCACTCTAGTTGGCCCCACTTGCTCCGGTTCAGCCCaaagatttatttattactatatgtaagtacactgtagctgtcttcagaagagggcaccagatctcattacaggtggttgtgagccaccatgtgcttgctggggtttgaactcaggaccttcagaagagcagtcagtgctcttacccactgagccatctcaccagccccCCTT e rn5.chr9 92294002 169 + 121549591 I a score=12924.000000 s mm10.chr1_GL456221_random 1375 229 + 206961 TCAGTTCTTTATTATAGTCTGGACAGACAGACATCTGTGGCCAGATGTTCAGTGGG-----------------------------------TTTTTTTTGCAGAAGAGTGACTGGTTCTGATTTAGTCAGGGAATTTGTAGCTATAA-GAATTCGTTCA--TCTTTTAGCTCCAAAGGCTTATTTCAAAACTGAAGCTTTGGGCTGGAAGACAGCAGGTGTTCCTTATTTTAAAATTTCAGAAAAAGGACAAAGCCCTAAGACCTGC s rn5.chr9 92294171 255 + 121549591 TCCGTTCTTTAT-ATAGTCTAGACAGACAGACATCTCTGGCCAGATGTTCTGTGGGACCtttttttttttttttttttttttttttttttttttttttGGTATAACAGTGGCTGCTTCTGATTTTGTCAGGGAATTTGTAGCCAAAAAGAATTTACTCACGTCTTTTAGCTCCAAAGGCTTATTTCAAAACTGAAGCTGTGGGCTGGAAGGCAGCAGGTGTCTTTT-----------TCAGGAAAAGGACAAGGCCCTAGGAGCTGC i rn5.chr9 I 169 C 0 a score=-951.000000 s mm10.chr1_GL456221_random 1604 1 + 206961 -T s rn5.chr9 92294426 1 + 121549591 -C i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 3339 1 + 176633 G- i micMur1.scaffold_3075 N 0 I 9 a score=-1.000000 s mm10.chr1_GL456221_random 1605 9 + 206961 -CTAAG---GTTA s rn5.chr9 92294427 13 + 121549591 ACTAAGCAGGCGA i rn5.chr9 C 0 C 0 e micMur1.scaffold_3075 3340 9 + 176633 I a score=273.000000 s mm10.chr1_GL456221_random 1614 1 + 206961 A s rn5.chr9 92294440 1 + 121549591 A i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 3349 1 + 176633 A i micMur1.scaffold_3075 I 9 I 13 a score=-123.000000 s mm10.chr1_GL456221_random 1615 1 + 206961 A s rn5.chr9 92294441 1 + 121549591 T i rn5.chr9 C 0 C 0 e micMur1.scaffold_3075 3350 13 + 176633 I a score=-598.000000 s mm10.chr1_GL456221_random 1616 4 + 206961 AGAT- s rn5.chr9 92294442 4 + 121549591 CGAT- i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 3363 4 + 176633 -GAGG i micMur1.scaffold_3075 I 13 I 6297 a score=8556.000000 s mm10.chr1_GL456221_random 1620 154 + 206961 GAAGCTGATTATTTATTTGGGCCTGGTTGCCAGAGCTCTTGATATGCAAATGTACCTCGGAGAAGGTATGCAAATCAAGGCGGGG----TCCCCCATCTCCCCCCCCCCCCCTCATAGGAAGAGCAATAAAGCCTTCCTTCCTTTCTGCTGCAGATTT s rn5.chr9 92294446 151 + 121549591 GAAGCTGATTATTT----GGGCCTGGTTGCCAGAGCTCTTGGTGTGCAAATGCACTTCAGAGAAGGCATGCAAATCAAGGCAGGGGAAATGGCTGATCT---TCCCAGAGTCTCACAGTAAGAGCAATAAAGACTTCCTTCCTTCCTTCTGCAAATTC i rn5.chr9 C 0 C 0 e micMur1.scaffold_3075 3367 6297 + 176633 I a score=1762.000000 s mm10.chr1_GL456221_random 1774 48 + 206961 CAAACTCCAATCGCCTGAA-------GTGTGCTAAGT-AGTTGCTCGGGCAGTGGG s rn5.chr9 92294597 49 + 121549591 CCAGCTCCAATCTCATAAA-------GTGTGCTCAGTCACTTGCTCTGGTGGCGGC i rn5.chr9 C 0 C 0 s dasNov3.JH566347 1667380 50 + 1805508 CACACCCC---CCCTTGAGATTTCACGTGTGCAAA---AGTTTTCCAGGCTGAGGG i dasNov3.JH566347 N 0 I 77947 e micMur1.scaffold_3075 3367 6297 + 176633 I a score=1210.000000 s mm10.chr1_GL456221_random 1822 33 + 206961 GTCCACACAG-CTGTTCCCATGTTCCCATGTTGC s rn5.chr9 92294646 34 + 121549591 ATCCACATGGCCTGTTCCCACTTTGCTGGGCTGC i rn5.chr9 C 0 I 153 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 3367 6297 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 1855 6 + 206961 TTGGAA e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 3367 6297 + 176633 I e rn5.chr9 92294680 153 + 121549591 I a score=61559.000000 s mm10.chr1_GL456221_random 1861 898 + 206961 CCGCATTGTTTTCCCTGGTTTGCCCACCCTACTACCCTGCGTCACTCGCGACAT----CTTGAGAGGCTCCATTCAAGCCCCCCTTCAAGTCCAGAAGTGTTCTCTGACTGC--------AGCCAATCAGGGCAGCTTGCTTTGATTTCCCACGCTGCACCTGATTATCTTTCTGATTGAGTAAATAAATAAAGCTACACACGGTGTCTTTGGTACCTCATTATTTGATTAAACTGAAATCTGCATCAGCCATTGAACAATAAGTTTCTGTTGGCCCAGTGACTGTTTTACCATCTGTCCCCTGCACTGTGCAGGATTAGGCATTGT-TTGTGTCTGTGCTCAGTAAAGGCCGGTTGGGAACAATGACAAAACAGTTCGTCCTGTTGATTCATGCGCTAAACGTATCAGACAAGTGAAGAAACCTGCCACCACTTGGTCTCACCAA---CAATTTCCCAGAAGCTATTTTGGATTAGGGGTGGGGAGATGGGCAGCTCAGTCCTGACAGCAGCTGCAACTGCCTTCATTTGGGCAGGGCGTGGAAGAACCGCTCTTTAGAATTTCATTCTATGGAGTGTACAGTGACTGGGCTTGGAGTCTTGGAACACACTTGACTAGAGCCCTGATCATGACTGACTGCTTGGCTCACAGGGAATGGAGCAGGTGTGTGCCCATTATGGGATACCCCAGGCAGGGACAGAGAGGTCTGCTGAGTAGGGATGGAGGAAATTTGGGGGACTGTCTGGGATTCTAGGTAAAATGAAGGGTGGCAAGTAGGATCAAATACAGAGAATGGGG---TATCCCCAGCTATGGTGAGCCCCGGTGCATGtgccgtgctgggatcaaacctaggactttgtatgtactaggtgagcactctgttaaccgaggtccacctgcagccccAGGCCTC s rn5.chr9 92294833 894 + 121549591 CTGCATTGTTCTTCCTGCCTTGCCCACCCTCCTGCCCTGCTTCACTCTAGACATAACCCCTGAGAGGCTTGATTCAAACTTTCCTTCAAGCCCAGAACCGTTCTCTGACTGCCCGCAGCCAGCCAATCAGAGCAGTTTGCTTTGGTTTCCCACGCTGCCCCTGACTTTCTTACTGATTGAGTAAATAAATAAAGCTGCACACGGTGTCTTCGGTGCCTCATTATTTGATTAAGCTGGAATCAGCACCAGTCTTTGAACAAGAAGTTTCAGTTGGCCCGGTGACTGTTTTGCCATCTGTCCCCTGCACCATTGAGGGTTAGGCATTGTCTTGCGTCTGTGCTCACTCAAGGCTGGCTGGGAACAGCGACAGAACAGTTCGTCGTGTTGATTCATGCACTAAATGTATCAGACAAGTGAAGAAACCTGCCACCACTTGGTCTCACCAACAGCAGTTTCCCAGAAGCTAGTTTGGATCAGGGGTGGGGAGATGGGCAGCTCAACCTTGACGGCAGCTGCAACTCCATCC-----------------AAGAACCATTCTTGAGAATCTCATTCTATGGAGTGTACAGTGACTGGGCTTGGAGTCTTGGAACACACTTGGCTAGCGCCCTGATCATGGCTGACTGCCTGGCTCAT-----ATGGAGCAGGTGTGTGCCCAACATGGGATACCCCAGGCAGGGACGGGAAGGCCTGCTGAGTA-GGATGGAGGCATCCCGGAGGGCTGGCTGGGATTCTAGGCAAAACGAAGGGTGGCAAGTAGGATCAAATACAGAGAATGTAGCTCTTTAGCTGGCGATGGCGAGCcccggtgcatgtgcggtgctgggatcaaacctagggctttgtacatgctaggtgagcgctctgctaaccaagctccagtcacagccccGGGCCTC i rn5.chr9 I 153 I 7340 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 3367 6297 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 2759 5958 + 206961 TATCTCACAGGAGGACTGATTATTGGCTTTCTGAAGTCAACTTCAAATATAAAAGCACTTAGTTTACCAGCTGAGATCTGCAGTTATACTGGCTACCAGTCACAGTTAGACACCTTCTGAGAAAAACTGACGGTAAAAAAAGATTGCACTGTGGACtctgagccccattttttaatggggttatttgattttctggagtccaccttcttgagttctttatatatattggatattagtcccctatccgatttgggataggtaaagatcttttcccaatcttttggtggcctttttgtcttattgacggtgtcttttgctttgcagaagctttgcaattttatgaggtcccatttatcgattcttgatcttacagcacaagccattgctgttctattcaggaatttttcccctgtacccatatcttcgaggcttttccctactttctcctctataagtttcagtgtctctggttttatgtagagttcctgaatccacttagatttgaccttagtataaggagatagaaatggatcaattcgcattcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatgctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtgaccataggtgtgtggattcatctctgggtcttcaattctgttccattggtctacttgtctgtcactataccagtaccatgcagttttgatcacaattgctctgtagtacagttttaggtccggcatggtgattccaccagatgttcttttatccttgagaagagtttttgctatcctcggttttttgttattccagatgaatctgccgattgccctttctaattcgttgaagaattgagttggaattttgatggggattgcattgaatctgtagattgcttttggcaagatggccatttttacaatgttgatcctgccaatccatgagcatgggagatctttccatcttctgagatcctctttaatttctttctttagagacttgaagttcttatcatacagatctttcacttccttagttagagtcacaccaaggtattttatattatttgtgactattgagaagggtattgtttccctaatttctttctcagcctgtttatcctttgtgtacagaaaggccattgacttgtttgagttaattttatatccagctactttattgaagctgtttatcaggcttaggagttctctggtggaatttttagggtcacttatatatactatcatatcatctgcaaaaagtgatattttgactttttcctttccaatttgtatccccttgatctccttttgttgtctaattgctctggctaggacttcaagtacaatgttgaataggtagggcgagagtggacagccttgtctagtccctgattttagtgggattgcttccagcttctcaccatttacgttgattttggctattggtttgctgtagattgcttttatcatgtttaggtattggccttgaattcctgatctttccaagacttttatcatgaatggatgttggattttgtcaaatgctttctcagcatctaacgagacgatcatgtggtttttgtctttgagtttgtttatatactggattacattgatggatttccgtatattgaaccatccctgcatccctgggatgaaacctacttggtcaggatggatgattgttttgatgtgttcttggattcggttagcaagaactttattgaggatttttgcatcgatattcataagggaaattggtctgaagttctctatctttgttgggtctttttgtggtttaggtatcagagtaattgtggcttcatagaatgagttgggtagagtaccttccgtttctattttgtggaatagtttgtgaagaactggaattgggtcttctttgaaggtctgatagaactctgcactaaacctgtctggtcctgggcttttattggctgggagactattaatgactgcttctatttctttaggggttataggactgttgagatctttaacccgatcttgatttagctttggtacccggtacctgtctagaaacttgtccatttcatccaggttttccagttttgttgagtatagccttttgtagaaggatctgatggtgttttggatttcttcaggatctgttgttatgtctcccttttcatttctgattttgttaattaggatgctttccctgtgccctctagtgagtctggctaagggtttatctatcttgttgattttctcaaagaaccagctccttgattggttgattctttgaatagttcttgtttccacttggttgatttcacccctgagtttgattatttcctgccttctactcctcttgggtgaatttgcttccttttcttctagaccttttaggtgtgttgtcaagctgctaatgtgtgctctctctagtttctttttggaggcactcagagctatgagttttcctcttaggaatgctttcattgtgtcccataggtttgggaatgttgtggcttcattttcattaaactccaaaaagtccttaatttctttctttattccttccttgaccaaggtatcattaagaagagtgttgttcagtttccatgtgaatgttggctttctattatttattttgttattgaagatcagccttagtccatggtgatctgataggatgcatgggacaatttcaatatttttgtgtatgttgaggcttgttttgttaccaattatgtggtcaattttagagaaggtaccatgaggtgctgagaagaaggtatatccttttgttttaggataaaatgttctgtagatatctgttaagtccatttgtttcatcacttctgttagtttcactgtgtccctgtttagtttctgtttccatgatctgtccattggtgaaagtggtgtgttgaagtctctcactattattgtgtgaggtgcaatgtgggctttgagatttactaaagtttctttaatgaatttggctgcccttgtatttggagcatagatattcagaattgagagttcctcttggagaattttacctttgatgagtatgaagtgcccctccttgtcttttttgatgactttgggttggaagtcaatcttatcagatattaggatggctactccagcttgtttcttcataccatttgcttggaaaattgttttccagcctttcattctgaggtagtgtctttttctctgagatgagtttcctgtaagcagcaaaatgttgggtcttgtttgtatagccagtttgttagtctatgtctttttattggggagttgagaccattgatattaagagatattaaggaaaagtaattgttgcttcctgttatttttgttgttaaagttggcattctgttcttgtggctctcttcttttagttttgttgagggattatcttcttgttttttctagggtgtggttcccgtccttgtattggtttttttctgttattatcctttgaagggctggattcgtggagagataatgggtgaatttagttttgtcatggaatactttggtttctccatctatggtaattgagagtttggctgggtatagtagcctgggctggaatttgtgttctcttagtgtctgtataacatctgtccaggctcttctggctttcatagtctctggtgaaaaatctggtgtaattctgataggcttgcctttatatgttacttgacctttttcacttactgcttttagtattctatctttatttagtgcatttgatgttctgattattatgtgtcgggaggaatttcttttctgttccagtctatttggagttctgtaggcttcttgtatgttcatgggcatctctttctttagatttgggaagttttcttcaataattttgttgaagatgtttgctggtcctttgagttgaaaatcttcattctcatccactcctattatccgtaggtttggtcttctcattgtgtcctggatttcctggatgttttgagttaggatctttttgcattttccatttcctttgattgttgtgccgatgttctctatggaatcttctgcacctgagattctctcttccatctcttgtattctgttgctgatgctggcatctatggttccagatttctttcctagggtttctatcttcagcgttgcctcactttgggttttatttattgtttctacttccctttttaggactagtatggttttgttcatttccatcacctgtttggatttgttttcctgtttatctataagggcttctacctgtttggtttgttttcctgtttttctttaaggacttgtaactctttagcagtgttctcctgtatttctttaagtgagttattaaattccttctttatgtcctctaccatcatcatgagatatgctcttaaatccaggtctaccttttcaggtgtgttagggtgccctggactgggcgaagtgggcgttctgggttctgatgatggtgagtggtcctggtttctgttagtaggattcttacgtttacctttcgccatctggcaatttctggagttagttgttatagttgtctttgtttagggattgttcctctggtgattttgttaccctctagcagcagacgtgggagactagctctctcctctgagtttcagtggtcagcacagtctctgcaggcaagctctcctctttcagggaaggtgcacagttatctggtgtttggacctcctcctggccgaagatgaaggcccaaaacaggatctttcccagaagctgtgttgctttggccaggaaggtggccagttgtctggagcttaagatggcgccgcctcagaagctctgtggctctcgcctgttccagaaactgctggcctctgtattccacaccctcacccgtgcagcctgccctcctcggagtcccggagccaaggtggctcccgccggagcctgaggcagaaacctctcgggctgggtggacccctgtgctctcaccaggaaggtggccggttgtctctctctcagagttcttatctcttcccagaagttcttccttctactttctgcctttgctataggccacaagctttttTTCCtttttctttttttaaaaagaattatttattttatgtatatgagtacactgacactgtcttcagacacaccagaagagggcatcagatcccattacaggtagttgggagtcaccatttggttgctggaaattgaattcaggacttctggaagagtagtcagtgctgttaaacactggtccacctctccaTATCTTgtcggtcagctttttaataacacaatcagaaggtgagagagggagtatttacaaaacactgagacaggagatgcttaacaatttcaaagtcccacctgtaactggatctctgccagttcagaaatcagcattattataatacagagacaacctgtatatctctgggtcaacctggtctacaaagtgagttctagaacagccagggctttttacacagaaaaatcctgtcttgaaaagctaaaTCAATAAAAAATAAAATAAACAAATAAACAAAAAAAcaaataggtcagtcttgaaaccatatacacacaaacaataaagactcagcaaactgtatttaaatatatttgaacatatacattcatatatgtatacatGGACATATACATACGTACATGTATGTGAAtgtattagtcagtactatattgctatgaggagacactatgaccctggcaactcttacaaaagaaaacatttaattggggcttgtttacagtttcaaaAAataggttttctccttagatggaataagccaattcaaaccgaattaagagttgaaaagggcaggtttaccttggcaagttcattggccccaaggaaggaggccaaggaaattgccatgcaaacaggaagacagagaaggggaaaagagaaaggagg e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 3367 6297 + 176633 I e rn5.chr9 92295727 7340 + 121549591 I a score=1349.000000 s mm10.chr1_GL456221_random 8717 31 + 206961 gagggagagggggagtgggaaaatagggaga s rn5.chr9 92303067 30 + 121549591 gagagagagagagagagagagag-agagaga i rn5.chr9 I 7340 C 0 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 3367 6297 + 176633 I a score=393.000000 s mm10.chr1_GL456221_random 8748 6 + 206961 gGTGTG s rn5.chr9 92303097 6 + 121549591 gagagg i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 9664 6 + 176633 GATGTG i micMur1.scaffold_3075 I 6297 I 1 e dasNov3.JH566347 1667430 77947 + 1805508 I a score=62018.000000 s mm10.chr1_GL456221_random 8754 357 + 206961 AAATCCTTCATACTCC-----AAATTTAAGCTCGGATAAGATACAGAGG--AAGGAGA-GGGAGGAAGTGGTGGTTAAAGTCACTTGTAACTAACC--------GGGT-TCCCTGTAAAACCTACCCTTCCCAC------ATGATGTGCTGTTAATG-------AGACAGAAAGCGTGGGAAGTT-GGACAAATAGTCAGAGAAGTTGGACT--GCAAATATCCCTAAGAAATTAAGTCACTCAAGAAAGAAAATGCAACTTACCTAAAAATTCCCGACCTCATATGCATGTTCCATTTACCCTAACTGCAGCCATGTCACTATTGTGTGGGACT-TTGCTGAC-TCTGT--TTAGCT------TGGGAACAGACACTGGCTGAAGTCAGAACAAACTTG s rn5.chr9 92303103 366 + 121549591 gaATCCTTTACACTCC-----AAATTTAAGTTTGGGTAAGATGCAGAAG-TAAGGAGAAGGGAGGAAGCGGTGGTTAAAGTCACTTGCAATTAACCAAGTTCCCGAGT-TCCCTGTACC-TTTGCCCTTCCCAC------ATGATGTGGTGTTAATG-------AGACAGAAAGGGTAGGAGGTT-GGGCAAATATTCAGAGAAGTTGGCTTT-GCAAATAGCCCCAAGAAATTAAGTCACTGAAGGAAAAAAATGCGATTTATCTAAAAATTCC-AACCTTGTATGCTCAGTCTGTTAACCCCAGTTGTAGCCACATCACCACTGCATGGGAAG-TGTTGACC-TCTGT--TTAGCG------TGTGAGCAGACGCTGACTAAAGTCAGACCAAACTTG i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 9671 385 + 176633 AAATTCTTTGTACCCTCAGGGAAACTTAAACTTGGGCAAGATGCAAAAGGGAAGGGGA-GAGAGGAAGTGGTGGCTACAGTTACTTGAAATTAGTT--------GAGAGTTCTTATAAAATGTTCTTTTCTCACATACAAATGGTGCAATGATACTGAGTTTAAAGTCAGAAAGTGTGGGGGTTTAGGGCAAATGTTCAGAGAAGACACAGTTTTCAAATAGCTCTAAGAAAATACTTAA------GGAAATATTGTGAATTATCTCAAAATTTCCAAGTTCTTATGGACAGTTCATTTACCACAATTGCAACCACATAATTACTGCAGGAAACTATTTCTGCCATATATACATATATATGCAATGTAAAAACATATTGATTAACTTAAGAATAAAGTTG i micMur1.scaffold_3075 I 1 C 0 s tupBel1.scaffold_111017.1-172466 62019 359 + 172466 AAATCCTTTGCACCCCCAGCGGGCCTTGAAGTTGGGCACGATGTGGAAGGGAAGGGGA-GAAAGAA----GTGGCTAAGGTTACTTGCC--------------------TTCTTGT--AATGTGCTTTTTCCACCCACAAATGGTACAATGATAACAAGTGTAAAGTCAGGAGGTGTGGGGGGTTTGCCCTAATGTTCAGAGGAGATTTACTTCACAAACAGCGCTAAGAAAATAAATTAC----GGAAAAAAATGTGAATTCCCTCAAAATCCCCATCCTTTTATGAATATTTCATTTACCATAACTGCAACCTTAACATTACTGCACAAAACTATGTCTGACTTCTAT--GTAGATATGCTATACAAACACGT--------AACTAAGAGTAAACTTG i tupBel1.scaffold_111017.1-172466 N 0 N 0 e dasNov3.JH566347 1667430 77947 + 1805508 I a score=4863.000000 s mm10.chr1_GL456221_random 9111 45 + 206961 --GAAACTCTTTAAAAG---CAAGAGGGAAAAAGTTGACATTTTTA----TCCT s rn5.chr9 92303469 48 + 121549591 --GAAGCTCTCTAAAAGTGACAGGGGGGAAAAAGTCGACATTTTTA----TCCT i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 10056 51 + 176633 GGCAAAATCTATAAAAG---CAAGAATAGAAAAGTAGTCGTTCATAATACTCAT i micMur1.scaffold_3075 C 0 C 0 e dasNov3.JH566347 1667430 77947 + 1805508 I a score=12909.000000 s mm10.chr1_GL456221_random 9156 38 + 206961 TGTAAGAGAATACTGAGTGAATTCTGGCCA---TTTAGAAG s rn5.chr9 92303517 38 + 121549591 TGTGAGAAAATATTGAATGAACTCAGGCCA---TTTAGAAG i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 10107 41 + 176633 TATAGGGAAATGTTGAATGAATCCACCCCATTGTTTAGAAG i micMur1.scaffold_3075 C 0 I 35551 s choHof1.scaffold_1541 38446 41 + 48313 TGTAAGAAAATGTTGAGTGACTCCAGGCCACTGTTTAGAAG i choHof1.scaffold_1541 N 0 C 0 e dasNov3.JH566347 1667430 77947 + 1805508 I a score=12482.000000 s mm10.chr1_GL456221_random 9194 348 + 206961 TTTCAGAAATTCAAA-----CCACAGTTAGAAACCT-GAATTATTCTTTTCCTCTGAGAAGGTCAAAGATTATGGCTGGGAATGTCTGCTGGGTATCTAAGTAATGACATGTACTTACACTGGTGGAGAGAAA---------------------------------------------------TTATTTAAAAAAttatttttattatttagtgtgtga--ttttgctgcatgca--tatatgcatcatgtgtgtgcagtaacccaggagaacaggagaggacattggatcccataggactgcagttatatatg-------gttgtactgtagatgctgggaattgaacctgggttctctgtaagaatagccagtgctcttaatcactgaggtatctctccTGTACCACCAGCGT s rn5.chr9 92303555 407 + 121549591 TTTCAGAAAATCAAA-----CCACACTTAGAAACTT-GCATTATTCTTTTCCTCTGAGAAGATCA---ACTATGGTTGGGAATGCCAGCCTGGCAGCCAAGCAATGGCATAAACTTACACTGGGGGAGAGAAAATTCCAAATCTTCCATTGATGGAGCTGGAGGGGAAGGAACCAGAATATTCTTTATTAAAAAAAttatttttgttgttttgtgtgtgggttttgcctgcatgcatgtatgtgtatcttgtgtgtgcagtaacccaggggaccaggagagggcgttagatccctttggactggagttacagatggttgtaagttgtactgtggattctgtagattgaacttgggccctctgtaagaatagccagtgctcttaaccactgaggtatctctcctgcaccACCAGAGT i rn5.chr9 C 0 I 125 s choHof1.scaffold_1541 38487 185 + 48313 -TTCAAGACTGTAAAATCAGCTACATTTATGATTTTAGCAT--TTTTTTTTCTCTGAGAAGGACAAAGGCTGTGGCTGGTACTGCCTGCCTG--------------------------CCTGATGGACAGTAG------------------------------------------------------------------------------------CAG---------GCACGCA--------------------GTTgtaat-----------ggagagaa---------------------agttacatgtc-------ggccaacagcaggggttaggg--------------------aaggat-gccagagct------------------tttcttgt----------- i choHof1.scaffold_1541 C 0 C 0 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=21568.000000 s mm10.chr1_GL456221_random 9542 230 + 206961 ATTTCTAAGGGATAAGAGGACCATGTGATGACGGGTCTGGCCTTGAGGACAT--TGGAAAAGACTGAGCC-ATAAGGCTTCCTGCCTCCAAGTGAGGAGCTCTCTGATAAAAGGTTGGAGGATACTATAGAGGGCGCTGCTGAAGGAGATGGTGGAGGTGGAGTAAGAACCATCT-ACCAGAGGCAAGCAT----------CCAGAGAGGTGAACTCTGATTG--------------AGTTCTGTAAGAAAGAATGAG s rn5.chr9 92304087 222 + 121549591 ATTCTTAAGGAATAGGAGGACCAGGTGATAA---ATCTGGCCTTGAGGACAT--TGGAAAAGACTGTGTC-ATAAGGCTTCCTGCTTCAAAGTAAGGGGGTCTCAGATAAAAGGTTGGAGGATACTATAG-GGGTACAGTTGAAGGAGAGGCTGGAGACGG----AGAAACATCT-GCCAGAGACAAGGAT----------CCAAAGAGGTGAACTCTGATTG--------------AGTTCTACAAGAGAGATTGAG i rn5.chr9 I 125 C 0 s choHof1.scaffold_1541 38672 231 + 48313 --------gggccaagaggacc-tgtgggga-gaagctgacct---ggacgtgatggaaaagacccatccaacaaggcttcatgc--caggggagaggattcctccacaaaaagctggaggttaccattg---------ctacagggga---tgaagatggggtgagaagtaactggccagtgacaagaattgcccaaggaccaaaaggggtgactctgactgaggattccactaaaagtgccacaggaaagaaagag i choHof1.scaffold_1541 C 0 N 0 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=11709.000000 s mm10.chr1_GL456221_random 9772 172 + 206961 TAAGCACCAATTTTCCTACCCAACACACAAACGTGTAGCTCagactttattttttcaaaaccttatttttaaaatgggttcttaaatactttaactcccccttctagccctccacccaccagaggtagtggaaaagaaaggttatgagaatacaggggagttggacatgttt s rn5.chr9 92304309 167 + 121549591 TAATCACCAATTTTCCTACCCAACACACAAGTGtgtagcttagat----ttttttcagaaccttacttttaatatgggctctgaaatgctttaac-ctcccttctagccctccacccactggcggcagtggaaaagaaaggttatgaggatacaggggaagtgaacctgttt i rn5.chr9 C 0 I 119 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=9544.000000 s mm10.chr1_GL456221_random 9944 148 + 206961 agaaatagttatttggagcaaatcccatctgtgttgtcaggaactcagcagttcagttcacaggaatcagcagaggctgctccatccacttgaaaacacttaacgaatatactagcagtccagctcagtggtgtcaggatagcaaaca s rn5.chr9 92304595 146 + 121549591 agaaattgttctttggaataaatctcatttgcaacgtcaggaaatcagcagttcagttcatagg--tcagcagcagcagctcaatccatttgaaaacacttcacgaatataccagcagttcagttcagtgatgttggggtagcaaaca i rn5.chr9 I 119 I 239 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 10092 21 + 206961 caagtcctcacacagatgaga e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I e rn5.chr9 92304741 239 + 121549591 I a score=14441.000000 s mm10.chr1_GL456221_random 10113 372 + 206961 ctcaccatgtgagtctgt-ttagcaaaactccatgtgagtctgtatcagatgacatcactatgcccatcagcctgagtccgaggaagtgacaagaagca---gaagttttttggtgcatttctgtcattggagtcacaacaaacagagctcagtaacacactgtcagatgagccaatacatgggtgtcatttagtaaagtgtccttcatcaaacatccattcacgtgcttgctttagcaaaacatcctttcacccatgtctgtttcaggaaaacatcctgtgatataactgactttcctgaaaaaccgtaagtctcca-----cAAACCCTGGCCTTTGCTATGGACAGTCTTTTCTCACCTTCCAACCCTGGAGAACTCA s rn5.chr9 92304980 299 + 121549591 ctcaccacatgagtctgtcttagcaaaactccacatgagtttgtatcagctgacattactcttccaatcagcacaaatccgaggaagcagcaagaaccaccagaaatttttgggtgcatttctgtttatgaagtcacaa----------------------tgtcgggtgagccagtacatgggtgttgtt-agtaaagaatccttcatcaaacatccattcTTTT-----------------------------------------------------------TAACTGTCTTTCCTAAGAAACCATACATCTCCAGGTCACAAACACTGGCCTTTGTTACAGACAGTCTCGTCCTACCTCCTAACCCTAGAGGACTCA i rn5.chr9 I 239 T 1013 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=6963.000000 s mm10.chr1_GL456221_random 10485 86 + 206961 CCAGAGAGGTGAACTCTGACTGAGTTCTGTAAGAAAGAATGAGTAAGCACCAATTTTCCTACCCAACACACAAATGtgtagcttag s rn5.chr9 92304266 86 + 121549591 CCAAAGAGGTGAACTCTGATTGAGTTCTACAAGAGAGATTGAGTAATCACCAATTTTCCTACCCAACACACAAGTGtgtagcttag i rn5.chr9 T 1013 I 2353 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 10571 577 + 206961 aatttttttcaaaaccttacttttaaaatgggttcttaaatactttaactccctcttctagccctccacccaccagaggtagtggaaaagaaaggctatgaggatacaggggaggtggcatggaggggtgctgctttctggcttgctcctcttagctttgctcagtcttttctcgtagaacccaaaaccaccagaccagggatggcaccacctacaatgggctgggcttttcagtttcaatgactaattaagaaaataccctacagacttacctgcagcctgatcttatggaggcattttctcaaatgaggttttctcctctctgaagattcgagcttgtgtcaagttgacataaaaatagccagtataTGGGGACTTGCTAGGAGGGATaaataatgacaaggaggcttctataatagtttaaagctcaggcctttgacttggacagtctcctggctactctaaacttaacctaactagccagtgacccaccatatggccagctctatacgtttcTCTGCTCCCTCCATGTCCTTCTTGAATCTCCCACCTCTGCTTGAATCTCCCCTTAAATCAT e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I e rn5.chr9 92304352 2353 + 121549591 I a score=200902.000000 s mm10.chr1_GL456221_random 11148 3352 + 206961 TCTCTGCCTGCAAGTTCTGCCCTCCATTTTCTTCTCTGACTACTGGCTGTCAGATCTTTATTGCGACTAATCAGCATCGAGACAA--TCTCTGGTACATTTCTAGATTGCCTCTAGGCATAGAGAGCTGTCTGACCTTCAGCTATCTGAGCAGGTGTGGAAGGACAAGTATTTACAAATATAAGGCTGGTGATGGGCCATAGAAATGACAAAACCAATATCCTGCCAGCGTTTAGTCCTTTGCCC-TACAGAATTAACAATTGAAAACACAGAGACACACCATTACACAATGTGAAAAAAATATTATCCCAATAAGCTAGGATAGGTATCAAGATGCTATGATGAAACCAACCTAATATAACGAGAAATAAACCTGCTAGCAAACTTAATACCATCTGCAATCTTAATAATGTAATTATCCTAACATAGCTGACATAGCCATGTAACATGCTCATGAGCTGAGAA-----CACAGATAGACTTGCCTTGCATGCTTAGGGCCCTAGATTTGACTTCAAGCACTACCAAAGCAAGCAAGCCAACAAACAAACACCTACTAGTTCAAGAC---TTTTTTTGTAGTAAGAAATCAAAAGAAAGTCATAAATCCTAAGTT-CTGACTGTTATAAAAAGGACATATTTTGGGGAGTGTGGGATATTATCCTATCTCTCATATTTACTAAACTGAGATTCTTCTTCTTtttttttaaatttattcattttacaaactaatatc-gccctttctgtcctcccaggaccacatcacacaagtcctccctcccccatttcattctaccttctccttatcttttgagaagaggaa-----------ggtgtaa-------cccccccacccatatcaagccactgagtgactaggtggatcctctcccactgaggccagacaaggcattcatttaggggcacgggatccacaggcaggcaggcaacagactcaaggacagcctttgttccag-ttttgggggacctgtatgaagatcaagctgttcatctactatatatgtgcaggggccaaagtccagcctgtgcttgctctttggttggtggttcagtctctgggagtccctgaaggtacaggttagttgactctgtttgtcttcctgtggagtccctgtattctttggatccctcaatccttctcttaaatcttccataagcctccctgagctccatctcatgtttgggtatgagtctctacatctttttccattgttggctgtgtgaagcctctcagaggacagttatactagcttcctgtctgcaagcataacaaagtatcattaatagtgtgagggactggttcttgctcatgggatgggtctcatgttgggccagttattgttggacattcctgcagtctctgctccatctttgtccctgcatattttgtaggcaggacacattttgagtcgaaggcttttgggtgggtggctatccttatctctccagtgggagtcctgcctggctataggaagtgaccacttcaggatccatatccctcactgctagaattctcaactagagttgcatccattagaccctctggggttgccccctatcccaggtctctggcatgttctaaagattggccactcccatttctgatct-ccttctctctcccctgctctcctcatgtatgatctccacctaccagccctctccccttcccatccccttttccaaccagttccctccttccattaatgtccaatatctattttgtttccccttctgagaaagattcaaccatccttccttggaccctccttgtta-tttgacttctttgggtctgttggttatagatagcatggttatcctgtactctatgtctaacatccacttataagtgagtacatattatgcatgtccttttgtgtctgggttacctcacttaggatgatattttaaagttctatccatttgcatgagaaattcttgatattcttg-tttttaatgggtgagtagtagtccg-catgtaaatgagccacattttctgtctccattctttagttgaggga-atctgggttgtttccagtttctgtttattatgaataaaactgc--tgagcatagttgagcaaatgtccttgtgggatggtggcacatcttctgggtacatgctcaggtgtggtatagctgggtcttgaggtagaaatattcccaattttctgagcaactgccaagttgacttccagagtggttgtacaagattgtcctcc-cccagcagtgtaggagta-tttctcttgctccccaaccttgtcagcatgtgttgttctttgagtttttgatcttagccattctgataggtgtaaggtggaatctcagagttgttttgatttgcatttccctgatgactaaggatgttgaacatttctttaggtgtttttcagccattcaatattcctttgttgaaaactctctatttagctctgtacctcattt-tttaattgggttatttggattattggtatctaacttcttgagttctgctaaggatcaacctcagcttgcagagggttctgaggaaggagagtgttcaccaccaaccaaaaaaatgactaaaagtcaaatcatgggtacaagctgat---tagccttgtaatctgctcaagatggctccctaaacagctctctctagatagctcttggatctgtagtatgctcaagatagctttctgctcaagacag--ctttctgcatgagacagtttcct--ctgcctg-------agacagctctc--ttttgctctct--------------tgcaggaaaaagattgtaaaagacctgtatttgctctccaagcagttctctctgggtagctgctagaa------aaaaattctaaaagaactctgttttctctccagacagctcatccaggttgtttagctcttgcagaccaaagcccagtctttcatttgcatatcaattcagtcattttcttgaggttcttttttggttatcccacgagtcagcattttatgactgtagcaacttgattctaagaaaagaacagcaaattcttaaaaaacaaaataaa-----------------------------------------acaaaacatggcaaatgaattcagatatctgcttg---ctataagtaaagacaataagctagctgggtgggatccccaccactcctgggcttcaactagctctgtcccaggataaccttgaattcaggaatctgcctgaat----agtgcaaacaataaacttagctg-gagggatcttgccatgaaatcaccactctctaaatcttgttatttccttccttaatatctttctgacaaggtggctcacactgcagcagcctctgttttttaggtccatgaagcccccttcatgtaattcatactgcatccttatattttgcatagttgagaatata-------ttgaactcatgttgccaaaCT s rn5.chr9 92306705 3401 + 121549591 TCTCTGcctgcaagttgtgccctccattttcttctccatctattgactgttgggtctttattacaaccaatcagcctcgagagaaaaTCTCTGGTGCAATTCTAGATTGCCTCTAGGCATAGATGGCTGTCTGAACTTTGAGTATCTGAGAAGATGTGGAAGGACAAGTATTTACACATAGAAGGCTGGTGTTCGGCCATAGAAATGACAATACAAATATCCTGCCAACATTTAATCCTCTGCCCATACAGAATTAACAATGGAAAATACAGAGTCACACCTTTATACAATGTGAGGAAAACATTATCCTAACAAGCCAGGAGA-GTATTAAGATGCTATAATAAAACTA-------ATAATGAAAAAGAAACCTGCCAGCAAGCTTAATATCACCTGCAATCTTAATAATGTTGTAATTCTAATATAACCGACATACCCAT-TAACATACTCATGGGATGAGAACAGGTCACTGATAGACTTGCCTTGCATGCATAGGGCCATAGATTTAACTTCAAGCACTACAAAAACAAGCA----AACAAACAGAACCTTAATAGTTCAGGACTTTTTTTTTTGTAGTAAGAAAACAAAAGAAAGTCATAAATCATAAGTTCCTGATGATTAGAAAAAGGATATATTTTGGGGAGTGTAGGATAT--TCCTGAATCTCATGTTTACTAAACAGAG-TTGTTTTTTTTtttagtttagtttattgactttacaaaccagtatcaactcttcctctcttctcaggaccccatcacataagtcct---taccccatcccattctatcttctcc---tcttttgaggagaggaagacctcctctgggtataagtcccctctcccccacacatatcgagtcactgggggactaggtgcattctctcccactgagtccagacaaggcatctgtttaggggcactgggtccacaggcaaccaggcaacaggcttaaggacagcctttgctccagtttttgggggatctctatgaagatcatgcttttcatctactacatatgtgcaggggcctaagttcagcctgtgctcactctttggttgatggttcagtccgtgggagcccccaacagtccaggtcagttgactctggtggtcttcctgcagagtttctatctcctttggggccctcagtccttctcttagttcttccataagattcctcaagctctatccaatgtttggatgtgggtctctacatctctttccattggttgctgtgtggagtctctcagagcacagttatgctagcttcttgcctgtaagcataacagagtatcattaatagtatcaaggattagtgcttgcccatgggatgggtctcacgttgggccagtcattggtggccactccctcagtctctgctccatctgtgtccttgcacatcctgtaggcggggcacattttgggtcgaaggttttgtggacagttgctgtctttatccctccactgggagtcctgtttggcttttgaaagtgtccacttcaggatccatattccatgctgctaggagtctcagctagagtcaccctcatcagactctctagggcttccccctatcccaggtctctggcatgtcctaaaaattgcctacttctaccgctgatctcccttctttctcccttgctctccctacatatgatcctcccctacctcccctttccccttcccatacccttttccagtcagttccctccttctagtgacctccaatatctattttgtttcccattctgagaaagattcaatcatccttccttgtgctgtccttgttattttggcttctttggggctgtcgact----acaacatggttatcctgtactctatggctaatatccacttataagtgagtacagattatgcatgtttttttgggtctgggttacctca--------------ttctagttctatccatttgcctgtgaaattcatgatgtccttgttttttaatggctgagtagtattccattgtgtaaacgaaccacatttttggtatccattcttcagttgaggggcacctaggttgtttccagtttctggctactatgaacaaagctgttgtgaacatagctgagcaggtgtccctgt--gatggttgtgcatcttttgggtaaaagttcaggtgtggcatagctgggtc--------------ttcccaattttctgagtaactgccaagttgacttccagagtggttgtacaagtttgcactccacccagcagtggaggagtattttcctttgctccacaaccttaccaacatgtgttgtcctttgagtttttgatattagccattctgatgggtgtgagatggaatttcagagttgttttgatttgcagttccctgatgagtaaggatgttgaacttttctttagatg-ctttcagcc-------attgttttgttgagaattctctgtgtaactctgcaccccgtttctttaattgggttatttggattgttagtgtctaacttcttgagttctgccaaggaccagactcagcttggaaaggtttctgagaaag--aggtcctcagcagc-accaaaagaatgactaaaagtcaaatcatcgatacaagctgatagatagccttgtagtccactcaagatggttatctagacagccctctgtagacagctcttggctctgtagtctgcttgagatagctctctgcttgagattgttctctctgcccaagacagctgctttactgtttgtctctttggatagctcatgagcttcctgactaaagttagaaaagctgctaggaaaag-ttctaaaagagctatatttcctctccaagcaattctctttgggtagctgccagaaaaaaacaaaaactctaaaagaactctggt-----------cagctcatccagattacttagctcttgtagatcaaagctgagtcttttatttacatatcaattcagctatttacttgaggtttccttttgtttatcccacgaatcaacattttatgaccttagccacttgattcttagaaaaggacagcaaatatatatatatatatatatatatatatatatatgtgtgtgtgtgtatatatattatttttttttaaacatggcaaatgaattcagagatctgcctggttctataagcacagacaataagataactgggtgggatctccaccatgcctgggcctcaactagctctat-tcaggctgaccttgaactcaggaatctgctgcctttgtaagcacaaacaataaattgagctgagtgggatcttc---tgcaatcaccactctctaaatctctttatttccttccttaatatctttctgacaagatggctcatactgtagctgcctctgttttttaggcccatgaagcccc--tcatataattcatattgcacccttatactttgcatagttgagaaagtatatatttttgaactcttgttgttagagt i rn5.chr9 I 2353 I 6583 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 14500 1150 + 206961 CAgtctatgagacagttttattcatatccttcacctgtttgactatattttcttgtatttctttatgtttatttgcttcctcattaatgcttttgcttgcttgaatgtattttcatgtatttccttaaggaatttattcatttcttctttaaaggctcttattagctttattagattgaatttaaaatcctcttcttgtgcttcagtttcattagaatatccagggtttgttgtagaaggatagctgcgcACAACTCACCTCTGTAGGCTGTCCCAGATGGATCAATTGGGATAGTGGGCAACTCTTACTGGAATGGGATTGGTTGGGCAGGGTTCCAAGTTTTGGGGTTCTTGAAGGTTTCCACGAGGAAGTAGGATTCTCTTGGTTTCCCACAAGACTCCTCTGGACCGAAGAGTGAGTCCAGAGCTAGACAATGTAGCTCAGGGGACCATGTGCCACCCCCTGAGATTGTTCTTTAGAGGTGAAAACGACCAAAAGACTTTGTGTTATTGGAGAGTGACTAGACACAAagatatcacattatatccatcaggttgactactaccaaaaccaacaaaccaaatagaagacaacatgttggcaaagttttagagaaaatggagcattggtccattgttagtagcattgtaaaatgtgtgagaatatagaaagaagcacggagtttcctttaaaaactTGagccgggcatggtggcacatgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaccaaaaccaaaaaTTATTGTGCCCCAGTGGAACCATTGTGGTACGCTAGTTAGTTTTTCgggctggtgagatggcttgccaggtaagagcacctactactcttccaaaggtcccgagttcaaatcccagcaaccacatggtagctcacaaccatctgtaacaaaaatctgatgccctcgtctggagtgtctgaagacagctacagtgtataaataaataaataaataaataaataaataaataaataaataaatcaatCTTA e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I e rn5.chr9 92310106 6583 + 121549591 I a score=26609.000000 s mm10.chr1_GL456221_random 15650 375 + 206961 gaactgccaaaatgatttagcaatttcacttctggacctagatccaaaagagtcagaagcagaacattaaagaaatctcagcaaactctccactgaagcattattccccatagacaagagatTTagtattccctgcaggctcatgtactggaatacttggatgctagttggtggggtattgtgtaacccctgagatgtggatctgactgagggaaatagtcactgggagaaggGTGCTGGTTgcaaaaagcacacctttcatctcaagaggaatatcagatagtttagtctggagcaaaatatgattgaacaacctgggagcacagacttaggttacaccaaaagccatgtaccaatgtggcaacagttacatga s rn5.chr9 92316689 373 + 121549591 gaactgccaaa-tgatttagcaatctcacttctggacatagatccaaaagagtcagaggcagaacattaaagaaatccctgcatatcttctactgaaggactattcccagtaaacaagagatTTagtgttccgtccaggctcatgtactgcaatatttgaatgccagctggtggggaattgtgtaacccttgagatgtggatctaactgagg-aagtagtcactgggagaaggGtgtagattgcaaaaaacaaaactttcatctccaggagaatatcagatagtttagtctgtaatataatacggctgaacaacctgggtgcacagacttaagttaccccaaaaaccatgtaccaatgtggcaacagtttcaaga i rn5.chr9 I 6583 I 200 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=18796.000000 s mm10.chr1_GL456221_random 16025 314 + 206961 tttctatggtaagaaaataaaatcataaattaaggcaattttctaatacattggtgggaatgctggataggtggctatagcaaagtggggggacccctctatctg----------------atgataatcttaccctttgggttggtggaagctaggggactattagtatattctgaaagggttttaatcttatagtcatgggctacaaggtcaaccacagaggtaggtgatgtgtggctctgaaaagggcataaaatagtctaagataagtttttcctagacttgaaacattccagctcttcattcccatgaagattctaccagtcagt s rn5.chr9 92317262 308 + 121549591 tttttatggtaataaaataaaatcacaaattaaggcaattttctaatacattggtgggaatgttggataggcagttacagcaaagtgggggaacccctctatctgcctcagatgatatctgatgacagtcttaccctctgggttggtagaggttaggggactgtta---tattccaaaaggacttta-ccttatagtcatgggctat-------------taggtggatgatgcatggctctgaagaaggcataaagtagtctaatgt-----ttccctagacttggaacattacagctccccattaccatgagaattctcccagtcagt i rn5.chr9 I 200 I 521 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=35649.000000 s mm10.chr1_GL456221_random 16339 534 + 206961 caCCATTATAGAATCCTTAACACAGGTGCAGCTTT-------------AACTTCAGGTCACAGGACCTTACAGTTTGTAGTTTAATATTACTTCCTGATTCACCGAGATGTAAACAAGTAT----------------TTACAgtgatgagctgcccctaggccatgcccaccctgccgtgatgcactgtaccctcaaaccaagaagcaaagcaaatgtgt-gtcctttacactgcttcttgtcaggtgtgtcaccacagaaaccagacactaggaagtga-gtccctgatgtcatta--cttgacaggtggtttatagacattaggaagagctctgtgggagaaatagaaagagttggccttgtaggctagagcagccctaaagttcaatgggctgttctagtgggagatttaaggttgagactgtcaaccaggttcatgaagtttcagaaagactctaacaggaactggggtagtggtcaattatgttacagttggcatagagtct------------gcctgcattctaaaaatttgagtgagactg-aatgttaaaatatttacatttaatttaaat s rn5.chr9 92318091 580 + 121549591 caccattatagaatctttaatacaggtgcagctcttttcTTCCCTAGGAACTTCAGGTCATACAACCTTACAATTTGTAGTTTAATGATATTTCTTGGTCCAtcgagatgtaaacaagtatcttcatgcttctgccactacagtgataagctgccattatgccatgcctaccctgccatgatgcactgtaccctcaaaccaagaggcaaagcaaaattgtccttctttacattgcttcttgtcaggcctgccaccacagaaaactgacactaggaagtgaggttcctgatgtcattaacctgaccaggcggtttatagacatttggaaggggtctgtgggagaaatggaaagagttggctctgtaggctagagcagccctagagttcaattggctgttctggtgggatattacaggttgagactgtcaaccaagtctgtgaagtttcaaaaagattcttacaggaactggagtagaggtcattaatgttacagttggcatagagtctggctaccacacagcctgtattctaaaaatttgagcgaggctgaaattttaaaATATTTAAATTGAATTTTAAT i rn5.chr9 I 521 I 9714 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 16873 2353 + 206961 ttaaaatatttaaaatataaaaataaaataatttgtttagtgaggaaaatttcaaggcagtgtatcacctgggctatagaatggttactgcctactgtatttacccagatttacagtgagggaaggtgagaagacaggcaaaatgtgtaatttggagagaaggactataaactggttgaagttgtgacactaatatgaagtttgatgagcaaagggccccgacgcttgttaacgttggggacagagtaggtgtaggtaaagtacatgcaatagttaaaagattagcaacattaaagagataacctccgactttgcacaagaacaacaggaaaggtgctttgagggcaagaacccactcatggaaagctccagaatatagcagtgtaaattcatttgcaatgagagcgcgtctaacaatgacagagcctcaagggagccctgttgaaaaatggctgcttaactaagtaagtgtctttttagttcagttatgaagtcacagaaaggctgtggtagttgttcaagggggacaggccgcatcttgagctgacagcagctgggtaccatctgcatggtactgatgttgcaaggttcaaaatgccagagtgagggagtcatgaaagcttgcaacacggttccaggaggccactggagccaagcaatgcgtagcagggtGTCGTGAGCGTGCTGTGTCACAAACAGAGGTAAACGTATTTATGTCTTTCTAAAACATTTTATTGAATAATAACAAATCCACAAGCAGTGGTTTCACTGGTAGTCATCTGTCAGATAGCTCTGCTTTCCTTAATGACCAAGGCAAACAGGCCATTCCAACATAATTACTAACTCTTAGCTGATACATTAAACATAAGTTTATAACTTACTAACAACATAAGTCATATGTAACATGTCTCTATCTACCTCTATCCCTATAACTATATATTACAGGCTAGCTACCAAGAGTTAAGGTGGCAAACACTTGACAAGCCAGAGTTGGGAGACAGCTGGAAAGTCATAGGAGTCTGTAGGGTGAGATAACAAAGGACCCTGAGCCCTCTGGACAGGCACTGAAGTCATGGTTGGATTTGACTGCAGGGTCATGTTTGAGCTGTAGAGTTGAGTTCCACTGCAGAGTCTAAAAGGCAAGACTGGGTCCAGATGAATGGATGAGCAATTGCACTGGATGGCAGCGCAAGATGGATCAATAAGAGGATGGTAGATGGCAACTTGAGTAATCTGTGGCAAAGTGGGGACCAGGCTGAATCGAAGGCATTGGGACTTCAGGAATTCTTCACCCATTAGACCCTCGATGCACCTACGGAGTGGTCAGATGATAGGTTGGTGGGGACCATCACCATCACAGTGCCAGGTGTTCTCTTTAAAGGGCATAGATGAGGGAGCCACGTGCTTTCTCAGACTGGTATCTTTGGTTTGGTTTTTCTGATATGATTTTAATTTGCTTATAGGAATCTACATATAGTCCCAGTTCACTCTAACAAGTTTATAGAGAGGACCTTCTCTATACCCAGGAGTAAGTAATTTATCATCTGTGTTGTGTAGTCAGGGTTAAGCAGATGGTGCTGTTCATACTTCCAGCCAGGCAGAGTCATCTTACATCTGCAAACAGAATCTCAAGCCTCTTGTAAAAAGAAGTCTCTCagcccggcagtgaggtgaacacctttcatcccagcaccagtgggtctctgagttcgaggccagcctggtctacagagcaagttccaggacaactaaggccacataaagaaaccctgtcttaaaaaatccaaaCAAACCAAAACCCAAAACCTACCTCTCACCCTCCAGAAGGCAAGACACAATCTGAAAACAACAACAACCATGACAACAGAAACCCCTaacaacattaggaacaaaccagtaccccagagcacttgactctatctgcatatgtatcaaaagatggcctagtcgccatcaatggaaagagcagcccattggacttgcaaactttatatgcaggggaatgccagggccaaaaattgcgagtgggtgggtaggggagtgtgtgggggggggagggtatgggggacttttgggatagcattggaaatgtaaatgaggaaaatacctaataaaaattaaaaaaaaaAAGAAACCCCTAGCACATTCCTTTACACACTAACACCAggccatattctcttcatgggatatccgagtctgctgtgcatgaagctgtaaggtgaagcctatattacaatggagatcagaaatccaggaagtttgccaaggcaagctgcagtcactgggtggaaatggcccacgagaggaactacaatggcttcgggcaacagagctggagggccagggctaatca e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I e rn5.chr9 92318671 9714 + 121549591 I a score=22531.000000 s mm10.chr1_GL456221_random 19226 347 + 206961 agccctAGTCTAAGG-AGCTGCAACAGCTGGTGTAGCCCCTCATTAGCGTGAGCAAACAACCGGGAGCCTGTAAGTAAGCAATTAAAGATAAAAAACAATTTCCTGATGTGAAGGAGCTTCTATGGAGGAAGCCTGATAAGGAAGGGGAGAGATGGGATGGAAAAAA---CCTAATTAGCAATCCAAAGAGCAGCTTGTGGATGCTTCCAGAATACAGGGGGAAATGCTAAGGTGATGGCTACACCTGAGAAGGTGGCATGTCCAGGGATGACCGGTGGACCAAGGGCC---TGGGTGAGGGGGAAGGGCTGAAGTAGGGTGGCTGGAGACGTCCCAGACAGATCAAGACCATC s rn5.chr9 92328385 352 + 121549591 AGCCTTATTCTAAGGGAGCTGCGGCAGCTGGTTTAGGCCCTCATTAGCGTGAGCAAACAACCGGGAGCATGCAAGGAAGCAATTAAAGATAAAAAACAATTTCCTGATGTGAAA-AGCTTCTATGGAGGAAGGCTGATAAGGAAGGGGAGAAATGGAATGGAAAAAAACCCCTAATTAGTCACCCAAAGACCAGCTCATGGATGCTTCCAAAACACAGGGAGACATGCTAAGGTGATGGTTACACCCAAGAAGGTGAAACA-CCAGGGATGACCTGTGCACTTTATGACCCATGGACCAAGGGGGAGGGTGGAAGTGGGGTGGCTGGAGGTGTCCTAGACAGATTAAGAACATC i rn5.chr9 I 9714 C 0 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=273.000000 s mm10.chr1_GL456221_random 19573 1 + 206961 A s rn5.chr9 92328737 1 + 121549591 A i rn5.chr9 C 0 C 0 s felCat5.chrC1 212364322 1 + 221441202 A i felCat5.chrC1 N 0 I 11 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=91.000000 s mm10.chr1_GL456221_random 19574 1 + 206961 A s rn5.chr9 92328738 1 + 121549591 A i rn5.chr9 C 0 C 0 e felCat5.chrC1 212364323 11 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 10148 35551 + 176633 I a score=-547.000000 s mm10.chr1_GL456221_random 19575 2 + 206961 GA- s rn5.chr9 92328739 2 + 121549591 GA- i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 45699 2 + 176633 -ac i micMur1.scaffold_3075 I 35551 I 19 e felCat5.chrC1 212364323 11 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I a score=419.000000 s mm10.chr1_GL456221_random 19577 8 + 206961 ATTGCAAC s rn5.chr9 92328741 8 + 121549591 ACTGCATC i rn5.chr9 C 0 C 0 e felCat5.chrC1 212364323 11 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45701 19 + 176633 I a score=273.000000 s mm10.chr1_GL456221_random 19585 1 + 206961 A s rn5.chr9 92328749 1 + 121549591 A i rn5.chr9 C 0 C 0 s felCat5.chrC1 212364334 1 + 221441202 A i felCat5.chrC1 I 11 I 34 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45701 19 + 176633 I a score=91.000000 s mm10.chr1_GL456221_random 19586 1 + 206961 T s rn5.chr9 92328750 1 + 121549591 T i rn5.chr9 C 0 C 0 e felCat5.chrC1 212364335 34 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45701 19 + 176633 I a score=-328.000000 s mm10.chr1_GL456221_random 19587 7 + 206961 TCATTCC------- s rn5.chr9 92328751 7 + 121549591 TCATTCC------- i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 45720 14 + 176633 tcacaacagtgtgt i micMur1.scaffold_3075 I 19 I 1080 e felCat5.chrC1 212364335 34 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I a score=-62.000000 s mm10.chr1_GL456221_random 19594 2 + 206961 AA s rn5.chr9 92328758 2 + 121549591 GG i rn5.chr9 C 0 C 0 e felCat5.chrC1 212364335 34 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45734 1080 + 176633 I a score=877.000000 s mm10.chr1_GL456221_random 19596 6 + 206961 -----CAAAAA s rn5.chr9 92328760 6 + 121549591 -----CAAAAA i rn5.chr9 C 0 C 0 s felCat5.chrC1 212364369 11 + 221441202 cttatcaaagg i felCat5.chrC1 I 34 I 19287 e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45734 1080 + 176633 I a score=2734.000000 s mm10.chr1_GL456221_random 19602 37 + 206961 GAAGGCAAGCATCATCCACTTAATAGATGGGGTGAGT s rn5.chr9 92328766 37 + 121549591 GAAGGCAAGGATCATCCATGTAATACATGGGGTGAGT i rn5.chr9 C 0 C 0 e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45734 1080 + 176633 I a score=300.000000 s mm10.chr1_GL456221_random 19639 1 + 206961 G s rn5.chr9 92328803 1 + 121549591 G i rn5.chr9 C 0 C 0 s papHam1.scaffold28474 23434 1 + 24796 g i papHam1.scaffold28474 N 0 I 623 e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45734 1080 + 176633 I a score=14547.000000 s mm10.chr1_GL456221_random 19640 239 + 206961 GCTCAGACATGGGGAGAGTGAGGAACCCTGACAGTGACAGGGAGCTGGCCCTGGGATGCAGACAGATCAGAGCTATCTCTGTATC---------GTCTCTGCAGGAGGAACTTGCCAGCTGATGGGGTgtatggtacctcctaggttgcccgtgctccagccgatggctccacacccagaatcaactggattcactgagatatgaatatgggaggggcatgtgctggaagtcaggggaagctgtagga s rn5.chr9 92328804 242 + 121549591 GCTCAGACGTGGGGACAGTGAGGAACAGTGACAGTGTGTGAGGAACTGGCCCAGGATGCAGAC------GAGTTCTTTCTCTGTCATCCAAAATGTCTCAACAGGAGGAAGGTGCCAGTTGATGGGGTgtgtggcgcctcctaggttgcccatgctccagcggatggctccatacccagaattaattggattcagtgagagatgaacatgggagggggatgtgccggaagtcaggggaagctgtagga i rn5.chr9 C 0 I 486 e papHam1.scaffold28474 23435 623 + 24796 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45734 1080 + 176633 I a score=20277.000000 s mm10.chr1_GL456221_random 19879 313 + 206961 ggacaacagtcagcatggatctgggCTCCTGCTTCCTTAAGTGTTTCATAAAAAAAGACTAAAGAGGCATCTGGGAATATTCGCTTTTTCATTGTAAAGGGAAAAAAAAAGCATTCAGAAGCACCTAAGTGGATTTTAGCTCCTCTGAGTCTTTTACCTTTTT-CTTGAGTTCCATCATGACAATCAAATGACAGCATGATGGGCAAGGGC-----------ATGGATTTACCCAGTCCAATCAAGCCTCTGCATAAGGTCCCAGAGAAACAATCCACGCAATGCGCAGTACAAGGACCGTCCAGCAGAGGGAAGCATAGGCCCT s rn5.chr9 92329532 321 + 121549591 GGACAACAGTCAGCATAAGCCTGGGTTCCTGCTTCCTCAAGTGTTTCATAAAAAAGGACTAAAGAGGCATCTGGGATTTTTCGCTTTTTCATTGTAAAG----ACAAAAAGCATTCAGAAGCACCTACGTGGATCTTAGCTCCTTTGAATCTTTTACCTTTTTACTTGAGTCCGATCATGACGATCAGATGGCAATACGATGGGCAAGCGCTTTGTTAATATACCAACTTATCTCATCCGAGCAAGCCTCTGCATAAGGTCCCGGAGAAACAATCCGCCGTAAGCGCAGTTCAAGAACATTCCAGCAGAGGGCAGCATAGTCCTT i rn5.chr9 I 486 C 0 e papHam1.scaffold28474 23435 623 + 24796 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45734 1080 + 176633 I a score=873.000000 s mm10.chr1_GL456221_random 20192 3 + 206961 GGT s rn5.chr9 92329853 3 + 121549591 GGT i rn5.chr9 C 0 C 0 s papHam1.scaffold28474 24058 3 + 24796 GGT i papHam1.scaffold28474 I 623 N 0 e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45734 1080 + 176633 I a score=884.000000 s mm10.chr1_GL456221_random 20195 12 + 206961 ATGGGCATTCAT s rn5.chr9 92329856 12 + 121549591 ACGGACATTCAT i rn5.chr9 C 0 C 0 e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45734 1080 + 176633 I a score=191.000000 s mm10.chr1_GL456221_random 20207 6 + 206961 CGTGTC s rn5.chr9 92329868 6 + 121549591 AGTGTT i rn5.chr9 C 0 C 0 s vicPac1.scaffold_371 919687 6 + 946679 CTTGAT i vicPac1.scaffold_371 N 0 I 9772 e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45734 1080 + 176633 I a score=13525.000000 s mm10.chr1_GL456221_random 20213 219 + 206961 CTGGC-----CACTGTCCTGATTTGTTAGTTGTTTAGGTATAAACAGAGGCACAAGGTAGCCAGACACAAAACAGAAAACAAGACTGATCCACTTCTGACCTCCAGTGCCACCCACAAAGTAAACAGAAGGCACACAGACAATTGACCAAAAGTCTGAAAGAGCCTTGAAGAGAAGTCCCTGG-GGCAAGCCACAT-CCAGAGACCTAT-CTATGCTCCTGCCCCTG s rn5.chr9 92329874 227 + 121549591 CTGGCATCCTCCTTGTTCTGATTCGTTAGTTGTTTAAGTATAAACAGAGGCACAGAGGAGCCGGACACAGGACAGAAAACAAGACTGATCCACTCCTGACTTCAAATGCCTCTCACACAGTAAACAGGAGGCACACAGACAACTAACCAAAACTCTGAAAGAGCCGTGACGAGAACTCCCTGACAGCAAGTTACATGTTGGAGACGTATGccctgcccctgcccctg i rn5.chr9 C 0 I 38 e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45734 1080 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 20432 60 + 206961 GACTGGGGCAGGTGGGGGTGCGGGTggagggggaggggtgagaaggggggaggagggggt e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 45734 1080 + 176633 I e rn5.chr9 92330101 38 + 121549591 I a score=100.000000 s mm10.chr1_GL456221_random 20492 1 + 206961 g s micMur1.scaffold_3075 46814 1 + 176633 G i micMur1.scaffold_3075 I 1080 I 10101 e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e rn5.chr9 92330101 38 + 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 20493 5 + 206961 gagga e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I e rn5.chr9 92330101 38 + 121549591 I a score=18613.000000 s mm10.chr1_GL456221_random 20498 358 + 206961 gggCTGGGAGTTGGGGGGGATTTCCTTGTGAAAGCAATACTTATTTAAGGTGGTACCTATGGGTGTGGAACACAGAGGGAGCAGGAAGATAGGATTTCTTCTGGGTGACTATGAGGAAGAGGTGGTGGTGGTGGTGGGAGCACACAGTGTGCTCTGTT--CTCGACAGGGAT-------------------------GGCAGTTATAGTGCTGACTAAGAGAAACCAACCGGAAGGACTGGAATTTGCAAAGCAGTGAGGTGCTCTCTGCTACTGGGGGCTGGGAGAGTATCCGTGTTCCATGAAGGCATGGAACATAGAATAGCACCCCCAGTGATTTGCAGAACCTGGGCTGTTTAAATAAAAATAAAagaataaagaagaaa s rn5.chr9 92330139 378 + 121549591 ccgcccctgccTTGAAGGTAATTCCTTGTAGAAGCGATACTTATTTAAGGTAGTTCATATGGGTGTGGAGCAGAGAGGGAGCAGGAAGTTGAGATTTGT----GGTGAGTATGAGGAAGAGGTGGTAGTGGTG--GGGAGCACACTGTGCTCCGCGCTAGCTCGATAGGGATTAGTCTGCGGCCTGTCTTAGGAAAGGACAATTATAATGCTGACTAAGAAAAGCCAAAAGGAAGAACTGGAATCAGCAAAGCAGTGAGATGCTGGCTGCTACTGGGAACTGGGAGAGTGTCCGAGTTGCAGGAAAGCACGGAACATGGATGAGAATCCCCAGTGGTCTGCA-AACCCCGGTTGTTCAAATAAAAATAAAGGAATaaagagaaag i rn5.chr9 I 38 C 0 e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 20856 199 + 206961 aggaggaagaggaggaggaagagataggaggaagagggaggaagaggaaaggggggaggaggaggaagaggagagggaggaagaggagagggaggaagaggaggaggaggagaagaagaagaggaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaCGACT e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I e rn5.chr9 92330517 0 + 121549591 C a score=25820.000000 s mm10.chr1_GL456221_random 21055 477 + 206961 ACAGAGGGAGGGGAAAGGGAGGAGAGAGACTGTGGGGGAGAAACAGAAGATTCCAGAGCT-----------CATTTCTTAAAGCAAGCAGTAGTTTTTGTGCGCCATAGATGTGTGGTGGGATCAAGAGTTGGCTCCTCGAGTAATGGGGCTTGCTATGTAAGCCTGGCACACTGAATCTCATTCTAGGAGCCTGAATTCCACAAAACTCATCCTCTGCTCTCCATAATACTCATCCTCTGACCTACTTAGGCACCCTTTGGCCCATGAGTCCTTTCGTAACAGTGCGGGTTGCCTATGCATA--GTTATGTCtgtatatgggtgttttgttttccttgcatgtatagctgtgtaccacgatcatgcctggtgctcccggaggctagaagaagtcattggatctccttgagctggagttaaaagatcattttgagccaccatgtggatgctgggaatcaaaacctgggtcctctggaagagcagccagtg s rn5.chr9 92330517 474 + 121549591 gcagagggagaggaaggggaggagagagattgtgggggaaaaatagaagACCTCAGAGCTACGTAGGTGCTTGTTTCTTAAGGTAAGCAGTAGCTTTTGTGGGCCAGAGATGCGTGGTGGGACCAAGAGTTAGCGCTGATAGTAATGGGGCTTGCTATGTAAATCTGGCAATTTTAATCGGATTCCAGGAGCTCAAATAAAGGTGCAAGGAGAGACCAAACTCTGCAAAACTCATTCTCTAACCGCCGCATGCACCCTTTGGCCCACAAGTCCTTTCATAACGGTGCAGGTTGCttatgtgtagtgttatgtctgtatgtgggtgttttgttttgcttgcatgtttagctgtgtaccacaatcatgcctagtgctcctggatgccagaagaagtcattgtatcccctagagctggaatt-taggacagtttctagccaccatgtggatgctgggag---------------tctgaaaaagcagccagta i rn5.chr9 C 0 C 0 e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=77.000000 s mm10.chr1_GL456221_random 21532 32 + 206961 ctccttaacctttg------agccgtctGGGAA-----GACCC s rn5.chr9 92330991 31 + 121549591 ct-cttaacttctg------agctgtctGCCCC-----GAGAC i rn5.chr9 C 0 C 0 s calJac3.chr6 146667735 43 + 158406734 CTTCTCAGTTTTTGCAGAAAGGCCACATGAGAAATATGGAGAT i calJac3.chr6 N 0 C 0 e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=16991.000000 s mm10.chr1_GL456221_random 21564 8 + 206961 TGGATTTC s rn5.chr9 92331022 8 + 121549591 TGGATTTC i rn5.chr9 C 0 C 0 s hg19.chr2 231065201 8 + 243199373 TGGAATTC i hg19.chr2 N 0 C 0 s panTro4.chr2B 235444446 8 + 247518478 TGGAATTC i panTro4.chr2B N 0 C 0 s gorGor3.chr2B 119397679 8 + 131632457 TGGAATTC i gorGor3.chr2B N 0 C 0 s nomLeu2.GL397366 3601342 8 + 6458163 TGGAATTC i nomLeu2.GL397366 N 0 C 0 s calJac3.chr6 146667778 8 + 158406734 TGAAATTC i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_81680 2898 8 + 9060 TGAAATTC i tarSyr1.scaffold_81680 N 0 C 0 e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=51585.000000 s mm10.chr1_GL456221_random 21572 29 + 206961 TAGAAACAACCCTGAT-----TCATAAGCTGGAG s rn5.chr9 92331030 29 + 121549591 TAGAAACAACCCTGAC-----TCACAAGCTGGAG i rn5.chr9 C 0 C 0 s hg19.chr2 231065209 29 + 243199373 TAGGAAAAAGCTTGAT-----CCATGGGTTGGAT i hg19.chr2 C 0 I 24 s panTro4.chr2B 235444454 29 + 247518478 TAGGAAAAAGCTTGAT-----CCATGGGTTGGAT i panTro4.chr2B C 0 I 24 s gorGor3.chr2B 119397687 29 + 131632457 TAGGAAAAAGCTTGAT-----CCATGGGTTGGAT i gorGor3.chr2B C 0 I 24 s nomLeu2.GL397366 3601350 34 + 6458163 TAGGAAAAAGCTTGATCCAACCCATGGGTTGGAT i nomLeu2.GL397366 C 0 I 24 s calJac3.chr6 146667786 27 + 158406734 TAGGAAAAAGCTTGAT-----CTGTAGGTTGG-- i calJac3.chr6 C 0 I 16 s tarSyr1.scaffold_81680 2906 29 + 9060 AAGGAACAAGCCTGAT-----TCATGGATTGGGT i tarSyr1.scaffold_81680 C 0 C 0 s equCab2.chr6 17800858 28 + 84719076 TAGGAAAAAACTTGAT-----CCATGGCTGGGC- i equCab2.chr6 N 0 C 0 e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=1024185.000000 s mm10.chr1_GL456221_random 21601 497 + 206961 ATTTTCAGTGTAGGGTGAGCAATATTCTCGA-ACACAGATTCTCAGCAGTG--------GTCCTCAGT--GGTCAAACATTATATTTTTATAGGAGGGGGAAAAGATGA-ACAACAC-------CA-CACACAT-A-----GTCCAGTCCATG--CATGTCTATA-----TATAAGTAGTCTTAAGCTAT----CATGAGAAG-G--TTGTGGTGAGAAAAGAAATATCCAA-A--GGGCTCTTTAGGGCAGTGGAAGTC----------------------TGGCTTAGAGCAGCCTGGCTGCTCTGACTGTGGGTCCCCGCTGGCTGCATCT-TGAGACCCACAGTGCCCCATCCTTACCTTGTGTGGTTCTTCGTGCTGTGCTG------------GGCCTCTTTCTACCACTTGTTTTTGATGCCTCTTTGCTGATCTCTAAAAGAAAGAA--------------GAAGAAAGAAACACTGTTCTTTGTCCGTGGACACTCCGTGAGGAGTCTCCCAA---CCCTCGAAGGGCCTCACATACTTCAGAGCTGA--GGATTGCAGACTCCAAGTTGC-----------------CTCCTCTCCCGAGG s rn5.chr9 92331059 503 + 121549591 ATTTTCAGTGTAGGGCAAGCAATATTCTCAA---GCAGATTCTCAGCAGCAGTGATGCTGTCCTCAGTGGGGGCAAACATTTCCCCCTTTCAGGAGGGGAAAAAGAT-----AACAC-------CA-CACACAC-A--------CAGTCCATG--CCTGTCTATC-----AGTAAGTAGTCTTAAGCTATCATGCATGGGAAG-G--TTGTGGTGGGAAAACAGACACCCAG-A--GGGCTCCTT-GGGCAGTGAAAGCC----------------------TGGCTTAGAGAG----TGCTGCTGTTAGTGTGGGCGCCTGCTGGCTGCATCC-TGAGACCCAGGCT-CCCTATCCTTACCGTGTATGGTTCTTCCTGCTGTGTGGGGCCTCTTCTGAGGCCTCTTTCTAGCCCTTGGTTTTGATGCTTCCTTGCTGATCTCTAGAAGAAA------------------AAGGAAGAAATGTTATTCCTTGCCTGTGGACGCTCCATGAGAAGTCTCCCAA----CCTCACAGGGCCTCTCATACTTCAGAGCCGA--GCACTGCAGACTCTAGGCTGC-----------------CTCCTCTTCCCAGG i rn5.chr9 C 0 C 0 s hg19.chr2 231065262 546 + 243199373 ACTTTCAGTATAGTACCATGAATATACTTAGGACACTcattctcagtaatggtgatattgctgccagt--agtggaaaaactcattcttgagtgctgagaaaaatcttatatagtgcagatataca-tacatac-atatggacacattacata-aaatggacata-----tatttgtagtagt-aaatat----catgggaaggg--tcttgattaagaaaaaaaaatccagaa--gggctctctagcacagtaataatgaaaaaaaaaagttaagaaatattgCCTCAGTGTAA---GACAGCTCTGAATTTAGATTCCTGGTGACTGTACTC-TGAGACCAGCAATCTCCAAGTTTTACCTTGTGTGACCCTTCGTGGTGTACTAGGCGTCTTCTGGGACCTCTTTCCTTCATTCATTTCTGAAGTGCCATCAATGATCTCTGGAAAATGAAA--------------GATCTTAGTAA--ATGCCCCTTG-----GGAAACACCATGGAGAATCTCCCAGAGACCCAGGAAGGCCCTTGCACACTCTGAAGTTGA--GTCTTGGAGGCTCCAGGT--C-----------------TTACCCTCCTAACA i hg19.chr2 I 24 I 507 s panTro4.chr2B 235444507 544 + 247518478 ACTTTCAGTATAGTACCATGAATATACTTAGGACACTcattctcagtaacggtgatattgctgccagt--agtggaaaaactcattcttgagtgctgagaaaaatcttatatagtgcagatataca-tacatac-atatggacacattacata-aaatggacata-----tatttgtagtagt-aaatat----catgggaaggg--tcttgattaag-aaaaaaaatccagaa--gggctctctagcacagtaataatg-aaaaaaaaagttaagaaatattgCCTCAGTGTAA---AACAGCTCTGAATTTAGATTCCTGGTGACTGTACTC-TGAGACCAGCAATCTCCAAGTTTTACCTTGTGTGACCCTTCGTGGTGTACTAGGCGTCTTCTGGGACCTCTTTCCTTCATTCATTTCCGAAGTGCCATCAATGATCTCTGGAAAATGAAA--------------GATCTTAGTAA--ATGCCCCTTG-----GGAAACTCCATGGAGAATCTCCCAGAGACCCAGGAAGGCCCTTGCACACTCTGAAGTTGA--GTCTTGGAGGCTCCAGGT--C-----------------TTACCCTCCTAACA i panTro4.chr2B I 24 C 0 s gorGor3.chr2B 119397740 544 + 131632457 ACTTTCAGTATAGTACCATGAATATACTTAGGACACTcattctcagtaacggtgatattgctgccagt--agtgcaaaaactcattcttgagtgctgagaaaaatcttatatagtgcagatataca-tacatac-atatggacacattacata-aaatggacata-----tatttgtagtagt-gaatat----catgggaaggg--tcttgattaag-aaaaaaaatccagaa--gggctctctagcacagtaataatg-aaaaaaaaagttaagaaatattgCCTCAGTGTAA---AACAGCTCTGAATTTAGATTCCTGGTGACTGTACTC-TGAGACCAGCAATCTCCAAGTTTTACCTTGTGTGACCCTTCGTGGTGTACTAGGCGTCTTCTGGGACCTCTTTCCTTCATTCATTTCTGAAGTGCCATCAGTGATCTCTGGAAAATGAAA--------------GATCTTAGTAA--ATGCCCCTTG-----GGAAGCTCCATGGAGAATCTCCCAGAGACCCAGGAAGGCCCTTGCACACTCTGAAGCTGA--GTCTTGGAGGCTCCAGGT--C-----------------TTACCCTCCTAAGA i gorGor3.chr2B I 24 C 0 s nomLeu2.GL397366 3601408 540 + 6458163 ACTTTCAGTACAGTACCATGAATATTCTTAGGACACTcattctcaataatggtgatactgttgccaat--agtggaaaaactcattcttgagtgctgagaaaaatcttataaagcacagatataca-tacatac-atatggacacattacata-aaatggacata-----catttgtagta----aatat----catgggaaggg--tcttgattaagaaaaaaaaatccagaa--gggctctctagcacagtgataatg-aaaaaaaga---aagaaatattgCCTTAGTGTAA---AACAGCTCTGAATTTAGATTCCTGGTGACTGTACTCTTGAGACCAGCGATCTCCAAGTTTTACCTTGTGTGACCCTTCGTGGTGTGCTAGGCGTCTTCTGGGACCTCTTTCCTTCATTCATTTCTGAAGTGCCATCAATGATCTCTGGAAAATGAAA--------------GATCTTAGTAA--ATGCTCCTTG-----GGAAGCTCCACGGAGAATCTCCCAGAGACCCAGGAAGGCCCTTGCGCACTCTGAAGTTGA--GTCCTGGAGGCCCCAGGT--C-----------------TTACCCTCCTAAGA i nomLeu2.GL397366 I 24 C 0 s rheMac3.chr12 93997160 547 + 106825570 ACTTTCAGTACAGTACCAGGAATATACTTAGGACACTcattctcagtaatgttgatactgatgccaag--agcagaaaaactcattcttgagtgttgagaaaaatcttataaagtgcagatataca-cacatac-atatggatacattacata-taaaggacata-----catttgtagtagtaaaatat----catgggaaggg--tcttgattaagaaaaaaaaatccagaa--gggctttctagcacagtgataatg--aaaaaaaagttaagaaatattgCCTTAGTGTAA---AACAGCTCTGAATTTAGATTCCTGGTGACTGTACTC-TGAGACTAGTGATCTCCAAGTTTTACCTTGTGTGACCCTTGATGGTGTGCTAGGCGTCTTCTGGGACCTCTTTTCTTCATTCATTTTTGAAGTGTAATCAGTGATCTCTGGAAAACAAAA--------------GATCTTAGTAA--ATGCCCCTTG-----GGAAGCTCTATGGAGAATCTCCCAGAGACCCAGGAAGGCCCTTGCACAATTTGAAGTTGAGTGTCCTGGAGGCTCCAGGT--C-----------------TTACCCTCCTAAGA i rheMac3.chr12 N 0 C 0 s calJac3.chr6 146667829 513 + 158406734 ACTTTCAGTACAGCGCCACGAATATACTTAGGATACTcattctcagtagcggtgatactgccaccaac--agtgcaaaaactcgttcttgagtgccgagaaaaatctcataaagtgcagatataca-cacatac-acacgtatatattacaca-aaatggacgta-----tatttgtggtattaaaatac----cacgggaaggg--tcttgattaag-aaaaaatatctagaa--ggactctctagcacagtgataattaaaaaaaaaagttaagaaatattA----------------------------------ACTGGTGACTGCACTC-TGAAATTAGCGATCTCCAAGTTTTACCTTGCTTGACCCTTGATGGTGTGCTAGGCGTCTCTTGGTATCTCTTTCCTTCATTCAATTTTGAAGTGCCATCACTGATCTCTAGAAAAAGAAA---------------ATCTTAGTAA--ATACTCCTTG-----GGAAGCTTCATGGGGAATCTCCCAGAGACCCAGGAAGGCCCTTGCACACTCTAAAGCTGG--GGCCTGGAGGGTCCAGGT--C------------------TGCCCTCCTAAGA i calJac3.chr6 I 16 C 0 s tarSyr1.scaffold_81680 2935 531 + 9060 ACTTTCAGTATAGTCCCAAGAATTTACTTAAGAcatgcattctctgtca---------tgtccccaat--attgcaaaaattggttcttcggtggtgataaaaagtttatgaagcacagatacata-tacagataatatgtaaatatagtgtataaattgacata-----tattggtggtattaaaatat----catggatagag--tcatggttagg-gaaaaacatgcaaaa--tggctatgtaggacagtaataatgaaaaagaaaagttgagaaacactgGTTTTGAGTAA---AACAGCTCAGAATTTGGGATCCTGATGACTGTACTC-TGAGACT---GATTCTCAGTCTTTACTTTGAGTGACCCTTGGTGGTATGCTAGATGTCTCCTGGGACCTCTTTCCTGCATTCATTTCTGAAGTGCCATCACTGGTCTCTGGAAAAAAAAA-----------------TTCAGT-A--GTGTTCCCTG-----GGAAGTTCCCCAGA-AATCTCCCAGAGACCCAGGAAGGACCTTGTGCACCCTGGAGCTCA--GGGCTGGAGGCTCTAGAT--C-----------------TTTCCTTTCTGAGA i tarSyr1.scaffold_81680 C 0 C 0 s equCab2.chr6 17800886 568 + 84719076 ACTTTCAATAGAGCACCATGAATACACATAGAGCAGGAactctcagcagtggtgat----------gt--tgcccaaaaattggctcctgggg---gaaaaaaatcttattcttcttatgtataaagcacaagt-aaatatatgcagtccata--aattgatatataatgtatttgagatattaaaatat----catatggaggggtttgtgatt----ggaaaaaatcctgaagtggactccttaaggaagtgataatg--aaaaaaaggttaagaaactctgGTTTAGAGTAA---AACAGCTCTGAATTTGGGCTCCTGATGACCACACTC-TGAGACTTGCAATCCCTTATCTGTACCGTGCATGATTCCTGGTGGTGTGCTAGGTGGCTCCTGGGGTCTCCTTCCTTCATTCACTTCTGAAGCGTCATCACTGACCTCTGAAAAAAGAAACAGCATTCCTCTTAAATCTCAGAAA--ATGCCTTCTG-----GAAAGCTCCATGGGGAATCTCCCAGAGATCTCAGAAGGCCGTTGCACACTCTGGAGCCAA--AGGCTGGAGGCTCCAGGT--CATGCCTGAGCCTCCATGATGCCCTCCTGAGA i equCab2.chr6 C 0 C 0 e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=10155.000000 s mm10.chr1_GL456221_random 22098 3 + 206961 GTG s rn5.chr9 92331562 3 + 121549591 GTG i rn5.chr9 C 0 C 0 s hg19.chr2 231066315 3 + 243199373 gtg i hg19.chr2 I 507 C 0 s panTro4.chr2B 235445051 3 + 247518478 ATG i panTro4.chr2B C 0 I 849 s gorGor3.chr2B 119398284 3 + 131632457 ATG i gorGor3.chr2B C 0 I 847 s nomLeu2.GL397366 3601948 3 + 6458163 ATG i nomLeu2.GL397366 C 0 I 848 s rheMac3.chr12 93997707 3 + 106825570 ATG i rheMac3.chr12 C 0 I 792 s calJac3.chr6 146668342 3 + 158406734 ATG i calJac3.chr6 C 0 I 1423 s tarSyr1.scaffold_81680 3466 3 + 9060 ATG i tarSyr1.scaffold_81680 C 0 I 1417 s equCab2.chr6 17801454 3 + 84719076 ATG i equCab2.chr6 C 0 T 5777 e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=18550.000000 s mm10.chr1_GL456221_random 22101 175 + 206961 GGAAAGTGGAAAGTTCAGTATAGAAAGAACACTTCTGTCACGTCTCCAAATTACATAGTTGTCCCAAGAA---TATGTATGTGCCTGTGTTGCTAGCTCACAATATAGTTCA------ACACTTTCCAAATGTCTGAGACATTATAAAGTCTTATATGAGTAGAAGACCTGTCCAAGATGGAGa s rn5.chr9 92331565 175 + 121549591 GGAAAATGGGAAAGT---TAAACATAAAATACTTCTGTCACGTCTCCAGAGTCCACAGTTGGCCGAAGAAGACTGTGTATGGGCCTATGTTGCCAGTTCACTATAAAGTTCA------ACGCTTTCCAAACGTCTGAGGCCTTATAAAATCTTATTTGAGTAGCAGGTCCATCTGAgatgggga i rn5.chr9 C 0 C 0 s hg19.chr2 231066318 178 + 243199373 aaaaactgaagag-----cacatataaagcacttctattgcatcctgaagtaccacagtggcctcaagaaaa-cacttgtgtgattgagatacaagctCActgtataattccaaatgtatattttccaaacagctgtactattataaaatcttgcattagtagaaggtccattcaaaatgcaag i hg19.chr2 C 0 I 108 e rheMac3.chr12 93997710 792 + 106825570 I e equCab2.chr6 17801457 5777 + 84719076 T e tarSyr1.scaffold_81680 3469 1417 + 9060 I e nomLeu2.GL397366 3601951 848 + 6458163 I e gorGor3.chr2B 119398287 847 + 131632457 I e panTro4.chr2B 235445054 849 + 247518478 I e calJac3.chr6 146668345 1423 + 158406734 I e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=8598.000000 s mm10.chr1_GL456221_random 22276 166 + 206961 gccagatgtggagggtcacacgttgaatctgagtacttggtaggcagaggcaagtgtatattatctttctgaatttgaagccaggctgatttacatagtgagtttgaagccagctaggggtacataacaaacaaacaaacaaaCCAAACCACTGCATCAAAAAAAA s rn5.chr9 92331740 141 + 121549591 ggcag----------------gtttaatttgagtacttggtaggcaggggtaagtg-----tatctctctgagtttgaagccaggctgatctccacagtgagtttgaagtcagctaggactacat---aaacaaacaaacaaa-caaaTCACTATATCAAAAAAAA i rn5.chr9 C 0 I 106 e rheMac3.chr12 93997710 792 + 106825570 I e equCab2.chr6 17801457 5777 + 84719076 T e tarSyr1.scaffold_81680 3469 1417 + 9060 I e nomLeu2.GL397366 3601951 848 + 6458163 I e gorGor3.chr2B 119398287 847 + 131632457 I e panTro4.chr2B 235445054 849 + 247518478 I e hg19.chr2 231066496 108 + 243199373 I e calJac3.chr6 146668345 1423 + 158406734 I e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 22442 90 + 206961 AAAAAAACCTCaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaGA e rheMac3.chr12 93997710 792 + 106825570 I e equCab2.chr6 17801457 5777 + 84719076 T e tarSyr1.scaffold_81680 3469 1417 + 9060 I e nomLeu2.GL397366 3601951 848 + 6458163 I e gorGor3.chr2B 119398287 847 + 131632457 I e panTro4.chr2B 235445054 849 + 247518478 I e hg19.chr2 231066496 108 + 243199373 I e calJac3.chr6 146668345 1423 + 158406734 I e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I e rn5.chr9 92331881 106 + 121549591 I a score=7449.000000 s mm10.chr1_GL456221_random 22532 114 + 206961 TCAAAGAGATTGGacacaaagagatctacccgcctttgcctcctaagtgctgggattataggcacaggctaa-----cacatgcagctggcgaaacagtttatTTTAGCAGAGAACAAG s rn5.chr9 92331987 119 + 121549591 tcaaagagattggatacaaagagatccacctgcccctgcttcctaagtgctaggattataggcacgggctatgctatcacgctcagctGGTGTGACATTTTATTTTAACAGAGAGCAAC i rn5.chr9 I 106 C 0 e rheMac3.chr12 93997710 792 + 106825570 I e equCab2.chr6 17801457 5777 + 84719076 T e tarSyr1.scaffold_81680 3469 1417 + 9060 I e nomLeu2.GL397366 3601951 848 + 6458163 I e gorGor3.chr2B 119398287 847 + 131632457 I e panTro4.chr2B 235445054 849 + 247518478 I e hg19.chr2 231066496 108 + 243199373 I e calJac3.chr6 146668345 1423 + 158406734 I e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=4163.000000 s mm10.chr1_GL456221_random 22646 65 + 206961 AGTACCAGAGATAAGGATTCAGAGTCTAGCTG-AGAGATGATGGGGCTGGTTAAGAGCATGCAGTG s rn5.chr9 92332106 60 + 121549591 AGTGGCAGAGACATGGATTCAGAGTGTAGCTG-ACAGGTGATGGGG-----TAAGAGCACGGGGTG i rn5.chr9 C 0 C 0 s hg19.chr2 231066604 53 + 243199373 agtattaaaggtgaatatccacag-atatctcaaaagactgttaaa-----ttacctca------- i hg19.chr2 I 108 C 0 s rheMac3.chr12 93998502 52 + 106825570 agtattaaagatgaatatccacag-atatctc-aaagactattaaa-----ttacttca------- i rheMac3.chr12 I 792 C 0 e equCab2.chr6 17801457 5777 + 84719076 T e tarSyr1.scaffold_81680 3469 1417 + 9060 I e nomLeu2.GL397366 3601951 848 + 6458163 I e gorGor3.chr2B 119398287 847 + 131632457 I e panTro4.chr2B 235445054 849 + 247518478 I e calJac3.chr6 146668345 1423 + 158406734 I e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=100692.000000 s mm10.chr1_GL456221_random 22711 94 + 206961 CCCTTGCAAAGGACTGGAGTTCCATGTGCAGCGAGATCCTCTCCCCA-TCCTCAGCCACAGCCA-CAGTCAGGTGCGTGAGTTCAGACGCAGCTCT s rn5.chr9 92332166 92 + 121549591 CCCTCACAGAGGACTGGAGTTCCATGTAAGGCTAGACCTTCTCC----TCTTCAGCCACAGCAATCCATCAGGTGCATGAGTTCAGAAGCAACTGT i rn5.chr9 C 0 I 128 s hg19.chr2 231066657 91 + 243199373 cccttttaa---actagatatctgtgtaaggccagattttctttctatccttcaatcaaagcaacatatca--caactgaatgcagaaacagttgt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235445903 91 + 247518478 cccttttaa---actagatatctgtgtaaggccagattttctttctatcctccagtcaaagcaacatatca--caactgaatgcagaaacagttat i panTro4.chr2B I 849 C 0 s gorGor3.chr2B 119399134 91 + 131632457 cccttttaa---actagatatctgtgtaaggccagattttctttctatccttcaatcaaagcaacatatca--caactgaatgcagaaacagttat i gorGor3.chr2B I 847 C 0 s nomLeu2.GL397366 3602799 91 + 6458163 cccttttaa---actagaaatctgtgtgaggccagattttctttctatccttcaataaaagcaacatatca--caactgaatgcagaaacagttat i nomLeu2.GL397366 I 848 C 0 s rheMac3.chr12 93998554 91 + 106825570 cccttttaa---actagatatctgtgtgaggccagattttctttctatccttcaatcaaggcaacatatta--caaatgaatgcagaaacagttat i rheMac3.chr12 C 0 C 0 e equCab2.chr6 17801457 5777 + 84719076 T e tarSyr1.scaffold_81680 3469 1417 + 9060 I e calJac3.chr6 146668345 1423 + 158406734 I e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=162509.000000 s mm10.chr1_GL456221_random 22805 110 + 206961 AAGCATCTACCTGT-TTCTCACAGAGCCCGAC----ATCACTGAGAACTGCAGGAGCTTGCATGGACACCCGTCTT----CTAAGTTTGTTTTTGCTTCAGAAATAATTTTCTCTC--------ACA s rn5.chr9 92332386 110 + 121549591 AAGAATCTACCTGT-TTCTCATGAAGCCCAGC----ATCACTGAGAGCTGTGGGAACACGGACTGACACCTGTCTT----CTAATTTTGTTTTTGCTTCAGAAATAATTTTCTCCT--------ACA i rn5.chr9 I 128 C 0 s hg19.chr2 231066748 125 + 243199373 aggaatccagctgtctttttataaagctcactcacaatcaaagagatttgcacaaacataaaatgatgtcactcttttcactaa--ttttttttgttttagaaaatatatttacttttcataaaata i hg19.chr2 C 0 C 0 s panTro4.chr2B 235445994 126 + 247518478 aggaatccagctgtctttttataaagctcactcacaatcaaagagatttgcacaaacataaaatgatgtcactcttttcactaa-tttttttttgttttagaaaatatatttacttttcataaaata i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399225 127 + 131632457 aggaatccagctgtctttttataaagctcactcacaatcaaagagatttgcacaaacataaaatgatgtcactcttttcactaattttttttttgttttagaaaatatatttacttttcataaaata i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3602890 126 + 6458163 aggaatccagctgtctttttataaagctcactcacaatcaaagagatttgcacaaatataaaatgatgtcactcttttcactaa-tttttttttgttttagaaaatatatttacttttcataaaata i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998645 127 + 106825570 agggatccagctgtctttttataaagctcactcacgatcaaagatatttgcacaaacataaaatgatgtcactcttttcactaattttttttttgttttagaaaatatatttatttttcataaaata i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17795680 119 + 84719076 Aagcacccagctgt-ctttgattaagctagac----attaaagagatgtgcaaaaatgtaaaatgatgccactcttctcactaa--ttattttaaatttggaaaagatacttatttttcataaaa-a i equCab2.chr6 T 5777 C 0 e tarSyr1.scaffold_81680 3469 1417 + 9060 I e calJac3.chr6 146668345 1423 + 158406734 I e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1667430 77947 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=-3213.000000 s mm10.chr1_GL456221_random 22915 3 + 206961 TGC- s rn5.chr9 92332496 3 + 121549591 CGG- i rn5.chr9 C 0 C 0 s hg19.chr2 231066873 3 + 243199373 atg- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446120 3 + 247518478 atg- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399352 3 + 131632457 atg- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603016 3 + 6458163 atg- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998772 3 + 106825570 aca- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17795799 3 + 84719076 atg- i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1745377 3 + 1805508 -tgt i dasNov3.JH566347 I 77947 I 43 e tarSyr1.scaffold_81680 3469 1417 + 9060 I e calJac3.chr6 146668345 1423 + 158406734 I e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=25129.000000 s mm10.chr1_GL456221_random 22918 21 + 206961 TTCCTT----GACCAA-----------ATTATT----TCA----- s rn5.chr9 92332499 25 + 121549591 TTGGTTATGTGACCAA-----------ATTGTT----TCA----- i rn5.chr9 C 0 C 0 s hg19.chr2 231066876 37 + 243199373 ctatttatgttaacaggcaattggtttattattg---tta----- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446123 37 + 247518478 ctgtttatgttaataggcaattggtttattattg---tta----- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399355 37 + 131632457 ctatttatgttaacaggcaattggtttattattg---tta----- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603019 37 + 6458163 ttacttatgttaacaggcaattggtttattattg---tta----- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998775 37 + 106825570 ttatttatgttaacaggcaattggtttattattg---tta----- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17795802 41 + 84719076 tt-tttatgttaa---gtgattgatttagtgttactcttaaatca i equCab2.chr6 C 0 C 0 e tarSyr1.scaffold_81680 3469 1417 + 9060 I e calJac3.chr6 146668345 1423 + 158406734 I e vicPac1.scaffold_371 919693 9772 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745380 43 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=8440.000000 s mm10.chr1_GL456221_random 22939 3 + 206961 CTT s rn5.chr9 92332524 3 + 121549591 CTT i rn5.chr9 C 0 C 0 s hg19.chr2 231066913 3 + 243199373 ctt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446160 3 + 247518478 ctt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399392 3 + 131632457 ctt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603056 3 + 6458163 ctt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998812 3 + 106825570 ctt i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_371 929465 3 + 946679 ctt i vicPac1.scaffold_371 I 9772 I 12 s equCab2.chr6 17795843 3 + 84719076 att i equCab2.chr6 C 0 I 6594 e tarSyr1.scaffold_81680 3469 1417 + 9060 I e calJac3.chr6 146668345 1423 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745380 43 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=3276.000000 s mm10.chr1_GL456221_random 22942 1 + 206961 T s rn5.chr9 92332527 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231066916 1 + 243199373 t i hg19.chr2 C 0 I 5 s panTro4.chr2B 235446163 1 + 247518478 t i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 119399395 1 + 131632457 t i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 3603059 1 + 6458163 t i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 93998815 1 + 106825570 t i rheMac3.chr12 C 0 I 5 s vicPac1.scaffold_371 929480 1 + 946679 t i vicPac1.scaffold_371 I 12 C 0 s equCab2.chr6 17802440 1 + 84719076 t i equCab2.chr6 I 6594 C 0 e tarSyr1.scaffold_81680 3469 1417 + 9060 I e calJac3.chr6 146668345 1423 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745380 43 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=5482.000000 s mm10.chr1_GL456221_random 22943 5 + 206961 AAACA s rn5.chr9 92332528 5 + 121549591 AAACA i rn5.chr9 C 0 C 0 s hg19.chr2 231066922 5 + 243199373 gaatt i hg19.chr2 I 5 C 0 s panTro4.chr2B 235446169 5 + 247518478 gaatt i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 119399401 5 + 131632457 gaatt i gorGor3.chr2B I 5 C 0 s nomLeu2.GL397366 3603065 5 + 6458163 gaatt i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 93998821 5 + 106825570 taatt i rheMac3.chr12 I 5 C 0 s tarSyr1.scaffold_81680 4886 5 + 9060 aaata i tarSyr1.scaffold_81680 I 1417 C 0 s vicPac1.scaffold_371 929481 5 + 946679 acata i vicPac1.scaffold_371 C 0 C 0 s equCab2.chr6 17802441 5 + 84719076 agaca i equCab2.chr6 C 0 C 0 e calJac3.chr6 146668345 1423 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745380 43 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=4152.000000 s mm10.chr1_GL456221_random 22948 6 + 206961 ---AAGATT s rn5.chr9 92332533 6 + 121549591 ---AAGCTT i rn5.chr9 C 0 C 0 s hg19.chr2 231066927 3 + 243199373 ---aa---t i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446174 3 + 247518478 ---aa---t i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399406 3 + 131632457 ---aa---t i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603070 3 + 6458163 ---aa---t i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998826 3 + 106825570 ---aa---t i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81680 4891 3 + 9060 ---aa---t i tarSyr1.scaffold_81680 C 0 C 0 s vicPac1.scaffold_371 929486 3 + 946679 ---ag---t i vicPac1.scaffold_371 C 0 C 0 s equCab2.chr6 17802446 3 + 84719076 ---aa---t i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1745423 6 + 1805508 aggaa---t i dasNov3.JH566347 I 43 I 56161 e calJac3.chr6 146668345 1423 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=24018.000000 s mm10.chr1_GL456221_random 22954 16 + 206961 TTTTTAATTATGTTTT- s rn5.chr9 92332539 12 + 121549591 TTTTTT----TATTGT- i rn5.chr9 C 0 C 0 s hg19.chr2 231066930 16 + 243199373 attttaaaattattag- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446177 16 + 247518478 attttaaaattattag- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399409 16 + 131632457 attgtaaaattattag- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603073 16 + 6458163 attttaaaattattag- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998829 16 + 106825570 attttaaaattattag- i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81680 4894 16 + 9060 atttaaaaattattag- i tarSyr1.scaffold_81680 C 0 C 0 s vicPac1.scaffold_371 929489 16 + 946679 atcttaaacctatcag- i vicPac1.scaffold_371 C 0 I 145 s equCab2.chr6 17802449 17 + 84719076 atttttaaacaattagt i equCab2.chr6 C 0 C 0 e calJac3.chr6 146668345 1423 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=33605.000000 s mm10.chr1_GL456221_random 22970 19 + 206961 TTTAAACTATGAATAATGG s rn5.chr9 92332551 19 + 121549591 TTTTAATTGTGAATAAAGG i rn5.chr9 C 0 C 0 s hg19.chr2 231066946 19 + 243199373 ttttaatttctaatcaggt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446193 19 + 247518478 ttttaatttctaatcaagt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399425 19 + 131632457 ttttaatttctaatcaggt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603089 19 + 6458163 ttttaatttctaatcaggt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998845 19 + 106825570 ttttaatttctaataaggt i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_81680 4910 16 + 9060 ttttaatttctaataa--- i tarSyr1.scaffold_81680 C 0 C 0 s equCab2.chr6 17802466 18 + 84719076 -tttaatctctaagaaggt i equCab2.chr6 C 0 C 0 e calJac3.chr6 146668345 1423 + 158406734 I e vicPac1.scaffold_371 929505 145 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=272829.000000 s mm10.chr1_GL456221_random 22989 110 + 206961 AGAAACAGGTAGACATAAACAACACAGACATAG--ACCTTGGGAAGTTCTTAGTAATCTTTAAGATTGTTAA-----------ATCTAAAGGGTTGACACCCTCTGCCTTAGGTCTCAACTGA s rn5.chr9 92332570 110 + 121549591 AGAAATATGTAGACATAAACAACACAGACGTGG--ACCTTGGGAAGTTCTTAGTAATCTTTAAGGTTGCAAA-----------ATCTAAAGGGTTGACATGCTCTGCCTTAGGTCTCAGCTGG i rn5.chr9 C 0 C 0 s hg19.chr2 231066965 121 + 243199373 acatgtagatagacataaacaacataaacagaa--gctccttagggtcctcaataatttttgagagcataaaggagtcctgagaccaaaaaatttgagagctgctgCCCCAGGCCACAGCTGT i hg19.chr2 C 0 I 4 s panTro4.chr2B 235446212 121 + 247518478 acatgtagatagacataaacaacataaacagaa--gctccttagggtcctcaataatttttgagagcataaaggagtcctgagaccaaaaaatttgagagctgctgCCCCAGGCCACAGCTGT i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119399444 121 + 131632457 acatgtagatagacataaacaacataaacagaa--gctccttaaggtcctcaataatttttgagagcataaaggagtcctgagaccaaaaaatttgagagctgctgCCCCAGGCCACAGCCGT i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 3603108 121 + 6458163 acatgtagatagacataaacaacataaacagaa--gctctttagggtcctcaataatttttgagagcataaaggagtcctgagaccaaaaaatttgagagctgctgCCCCAGGCCACAGCTGT i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 93998864 121 + 106825570 acacgtagatagatataaacaacatgaacagaa--gctctttagggtcctcaataatttttgagagcataaaggagtcctgagaccaaaaaatttgacagctgctgCCCCAGGCCACAGCTGT i rheMac3.chr12 C 0 I 4 s calJac3.chr6 146669768 118 + 158406734 -----aaaaaaaaaaaaaaaaaaacaaccaaaaatgctctttagggtcctcaataatttttaagagcataaaggagtcctgagactgaagaatttgagagctgctgCCCCAGGCCATAGCTGT i calJac3.chr6 I 1423 I 4 s tarSyr1.scaffold_81680 4926 120 + 9060 -gatatagacagacataaacaacataaacaaaa--actcctaggagtcctcagtaatttttacgagtataagggagtcctgagaccaaaaagtttgaaagctgctgCCCTAGGCCACAGCTGT i tarSyr1.scaffold_81680 C 0 I 4 s equCab2.chr6 17802484 92 + 84719076 atatatggccacatataaacaaca-----------------------------taatttttaagagtgtgaaggagtcctgagaccgaaaa-tttaagagctgctgCCC-AGGTCACAGCTGA i equCab2.chr6 C 0 C 0 e vicPac1.scaffold_371 929505 145 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=6178.000000 s mm10.chr1_GL456221_random 23099 5 + 206961 -GGTGA s rn5.chr9 92332680 5 + 121549591 -GGTGA i rn5.chr9 C 0 C 0 s hg19.chr2 231067090 5 + 243199373 -GTGAA i hg19.chr2 I 4 C 0 s panTro4.chr2B 235446337 5 + 247518478 -GTGAA i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119399569 5 + 131632457 -GTGAA i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 3603233 5 + 6458163 -GTGAA i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 93998989 5 + 106825570 -GTGAA i rheMac3.chr12 I 4 C 0 s calJac3.chr6 146669890 5 + 158406734 -GTGAA i calJac3.chr6 I 4 C 0 s tarSyr1.scaffold_81680 5050 5 + 9060 -CTGAA i tarSyr1.scaffold_81680 I 4 C 0 s tupBel1.scaffold_26703.1-1629 1059 5 + 1629 -GTGGA i tupBel1.scaffold_26703.1-1629 N 0 C 0 s equCab2.chr6 17802576 5 + 84719076 GGTCA- i equCab2.chr6 C 0 C 0 e vicPac1.scaffold_371 929505 145 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=8676.000000 s mm10.chr1_GL456221_random 23104 5 + 206961 CCTGT s rn5.chr9 92332685 5 + 121549591 CCTGT i rn5.chr9 C 0 C 0 s hg19.chr2 231067095 5 + 243199373 CACGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446342 5 + 247518478 CATGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399574 5 + 131632457 CATGT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603238 5 + 6458163 CATGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998994 5 + 106825570 CATGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146669895 5 + 158406734 CATGT i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_81680 5055 5 + 9060 TGTAC i tarSyr1.scaffold_81680 C 0 C 0 s tupBel1.scaffold_26703.1-1629 1064 5 + 1629 CACAT i tupBel1.scaffold_26703.1-1629 C 0 I 348 s vicPac1.scaffold_371 929650 5 + 946679 GCTAT i vicPac1.scaffold_371 I 145 C 0 s equCab2.chr6 17802581 5 + 84719076 GCTGG i equCab2.chr6 C 0 I 13 e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=422.000000 s mm10.chr1_GL456221_random 23109 1 + 206961 A s rn5.chr9 92332690 1 + 121549591 G i rn5.chr9 C 0 C 0 s vicPac1.scaffold_371 929655 1 + 946679 A i vicPac1.scaffold_371 C 0 I 352 s turTru2.JH490333 3410 1 - 53618 A i turTru2.JH490333 N 0 I 6695 s equCab2.chr6 17802599 1 + 84719076 A i equCab2.chr6 I 13 C 0 e rheMac3.chr12 93998999 0 + 106825570 C e tarSyr1.scaffold_81680 5060 0 + 9060 C e nomLeu2.GL397366 3603243 0 + 6458163 C e gorGor3.chr2B 119399579 0 + 131632457 C e panTro4.chr2B 235446347 0 + 247518478 C e hg19.chr2 231067100 0 + 243199373 C e calJac3.chr6 146669900 0 + 158406734 C e felCat5.chrC1 212364380 19287 + 221441202 I e tupBel1.scaffold_26703.1-1629 1069 348 + 1629 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=300.000000 s mm10.chr1_GL456221_random 23110 1 + 206961 G s rn5.chr9 92332691 1 + 121549591 G i rn5.chr9 C 0 C 0 s equCab2.chr6 17802600 1 + 84719076 G i equCab2.chr6 C 0 C 0 e turTru2.JH490333 3411 6695 - 53618 I e rheMac3.chr12 93998999 0 + 106825570 C e tarSyr1.scaffold_81680 5060 0 + 9060 C e nomLeu2.GL397366 3603243 0 + 6458163 C e gorGor3.chr2B 119399579 0 + 131632457 C e panTro4.chr2B 235446347 0 + 247518478 C e hg19.chr2 231067100 0 + 243199373 C e calJac3.chr6 146669900 0 + 158406734 C e vicPac1.scaffold_371 929656 352 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e tupBel1.scaffold_26703.1-1629 1069 348 + 1629 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=56036.000000 s mm10.chr1_GL456221_random 23111 30 + 206961 CTGTTTCTTTATCAAAAACTCCTTGGCCA-----T s rn5.chr9 92332692 35 + 121549591 CTGTTTCTTTACCGAAAACTCCTCCTCTGAAGTGG i rn5.chr9 C 0 C 0 s hg19.chr2 231067100 34 + 243199373 CTGTTTCTTCCAC-AAAACTTTTCAGATGCAACAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446347 34 + 247518478 CTGTTTCTTCCAC-AAAACTTTTCAGATGCAACAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399579 34 + 131632457 CTGTTTCTTCCAC-AAAACTTTTCAGATGCAACAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603243 34 + 6458163 CTGTTTCTTCCAC-AAAACTTTTCAGATGCAACAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93998999 35 + 106825570 CTGTTTCTTCCACAAAAACTTTTCAGATGCAAGAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146669900 35 + 158406734 CTGTTTCTTCCACAAAAACTTTTCAGATGCAATAG i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_81680 5060 32 + 9060 ACATTTCTTCAACAAAAACTACTGAGATTC---TT i tarSyr1.scaffold_81680 C 0 C 0 s equCab2.chr6 17802601 29 + 84719076 CTGCTTCTGC-ACAAAAACACCTCAGATGC----- i equCab2.chr6 C 0 I 7 e turTru2.JH490333 3411 6695 - 53618 I e vicPac1.scaffold_371 929656 352 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e tupBel1.scaffold_26703.1-1629 1069 348 + 1629 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=161127.000000 s mm10.chr1_GL456221_random 23141 67 + 206961 TCGTTGCCTCTCTTT-----GCCCCTCGCCTG----TTC---------TCTCTGAAAAT---CT---CTCTGCTAACACGGAGGTCATGTA s rn5.chr9 92332727 74 + 121549591 ATATTGCTTCTCTTT-----GCCCCTCTTCTC----CCCGACCCTCATTCTCTTAATGT---CT---CTTTGCTAACACTGAGGTCATG-- i rn5.chr9 C 0 C 0 s hg19.chr2 231067134 79 + 243199373 ATGCTTGCTCTCTTT-----GTTCCTCTTGTTATA-CCCCATCCTCATTCTCTGTACTT---TT---TCCTTTTACTATTGACTTTACATA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446381 80 + 247518478 ATGCTTGCTCTCTTT-----GTCCCTCTTGTTATACCCCCATCCTCATTCTCTGTACTT---TT---TCCTTTTACTATTGACTTTACATA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399613 79 + 131632457 ATGCTTGCTCTCTTT-----GTCCCTCTTGTTATA-CCCCATCCTCATTCTCTGTACTT---TT---TCCTTTTACTATTGACTTTACATA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603277 79 + 6458163 ATGCTTGCTCTCTTT-----GTCCCTCTTGTTATA-CCCCATCCTCATTCTCTGTACTT---TT---TCCTTTTACTATTGACTTTACATA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93999034 79 + 106825570 ATGCTTGCTTTCTTT-----GTCTCTCTTGTCATA-TCCTATCCTCATTCTCTGTACTT---TT---TCCTCTTTCTATTGACTTTACATA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146669935 79 + 158406734 ATGCTTGCTCTCTTT-----GTCCCTTTTGTCATA-TTCCATCCTCATTCTCTGTACTT---TT---TCCTTTTACTATTGACTTTACATA i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_81680 5092 87 + 9060 GTTTTTGTTCTTTTTTTTTGGTCCCTCTTGTCACA-CTTCATCTTCATTCTCTGTACTTCTGCT---TCCTTCTACTGTTAACTTTACATA i tarSyr1.scaffold_81680 C 0 C 0 s equCab2.chr6 17802637 80 + 84719076 --CCTTTTTCCCTCT-----GTCCCTCTTGTTAAA-CCTCACTGTTTTTCTCTGCACTT---CTCCCTCCTCCTAGTATTAACTTTACAAG i equCab2.chr6 I 7 C 0 e turTru2.JH490333 3411 6695 - 53618 I e vicPac1.scaffold_371 929656 352 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e tupBel1.scaffold_26703.1-1629 1069 348 + 1629 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=684721.000000 s mm10.chr1_GL456221_random 23208 234 + 206961 TCCCCCGACCCCTGCACCAGCTCTGAG--AGATTTGCCCAGGCTGAGCCTTTCCAATGGCAG--GTGCCACCCTCAGCCTTACCTTGTGAATTGGATGTCTGGGCACACCTCATCCTTGCTCTCAGTGTCTTGGTCACCTCCTTCACGTTCGTAGATGAGTCATCTTTCCACAAAGTCCTCCTGCTCACCGCCTTGAGCTTCTCTTGAACTCCATGTCCAGGTGAGGCCACTCCTGCC-- s rn5.chr9 92332801 233 + 121549591 -CCCCCCCCCCCCATGCCAGCTCCAAG--AGACCCTCCTGTGCTGAGCCTTTCCAATGGCAG--GTGCCACCCTCTGCCTTACCTTGAGAACTGGATGTCTGGGCACAGCGAGTCCTTTCCCTCAGAGTCCTGGTCACTACCTTCACGTTCCTAGTTGAGTCATCCTGATTCAGAGTCCTCTGCCCCACCACCTTGAGCTTCTCCTGAACTCCAGGTCCAGGTGAGGCCACTCCTGGG-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4089489 228 - 10418462 TCCCCTGACCTGCCCTCCCCCTC----------CTTCCCTCCCTGCACCTGCTCCAGGACAGCCATTCCTTCCCCAGACTTACGGTCCTGTCTGGATGCCCGGGCACGTGTGATCCTAGCCTTCTGGGCCCTTGTCACCACCCTGGGGCTGCAGGTTGAGTGATCCTTCCTCCGAGTCTCCTGATCCAGCTTTGGGAGCTTCTTTTCATCTCTGTGCCCAGGTGAGGCAGCCTCTGGA-- i speTri2.JH393335 N 0 I 2 s hg19.chr2 231067213 236 + 243199373 TCTACTTAACTCTGTACCTGCTTCAGGAGAGACCCTCCCACACTGAGCCATTCAAATGGCAG--ATTCCATCATCAGCCTTACCCTCTGATCTCGACTTTCGGGCACATTCAGTTCTCGCCTTTTGGGCCCTTGTCTCTACCGTGGAGTTACAAGTTGAGTCATCTTTCTTTTGAGGAACCTGATCCACCCTTTTGAGCTTCTTTTGGATTCCGTGTCTAGATGAGGCTGTCCCTGGA-- i hg19.chr2 C 0 I 2 s panTro4.chr2B 235446461 236 + 247518478 TCTGCTTAACTCTGTACCTGCTTCCGGAGAGACCCTCCCACACTGAGCCATTCAAATGGCAG--ATTCCATCATCAGCCTTACCCTCTGATCTGGACTTTCGGGCACATTCAGTTCTCGCCTTTTGGGCCCTTGTCTCTACCGTGGAGTTACAAGTTGAGTCATCTTTCTTTTGAGGAACCTGATCCACCCTTTTGAGCTTCTTTTGGATTCCGTGTCTAGATGAGGCTGTCCCTGGA-- i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119399692 236 + 131632457 TCTACTTAACTCTGTACCTGCTTCAGGAGAGACCCTCCCACACTGAGCCATTCAAATGGCAG--ATTCCATCATCAGCCTTACCCTCTGATCTGGACTTTCGGGCACATTCAGTTCTCGCCTTTTGGGCCCTTGTCTCTACCGTGGAGTTACAAGTTGAGTCATCTTTCTTTTGAGGAACCTGATCCACACTTTTGAGCTTCTTTTGGATTCCGTGTCTAGATGAGGCTGTCCCTGGA-- i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3603356 236 + 6458163 TCTACTTAACCCTGTACCTGCTTCAGGAGAAACCCTCCCACATTGAGCCATTCAAATGGCAG--ATTCCATCATCAGCCTTACCCTCTGATCTGGACGTTCGGGCGCATTCAGTTCTCGCCTTTTGGGCCCTTGTCACTACCATGGAGTTCCAAGTTGAGTCATCTTTCTTTTGAGGAACCTGATCCACCCTTTTGAGCTTCTTTTGGATTCCATGTCTAGGTGAGGCTGTCCCTGGA-- i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 93999113 236 + 106825570 TCTACTTAACCCTGTACCTGCTTCAGGACAGACCCTTCCACACCAAGCCATTCAAATGGCAG--ATTCCATCATCAGTCTTACCCTCTGATCTGGAGTTTCGGGCACATTCAGCTCTTGCCTTTTGGACCCTTGTCACTACCGTGGTGTTCCAAGTTGAGTCATCTTTCTTTTGAGGAACCTGATCCACTACTTTGAGCTTCTTTTGGATTCCATGTCTAGGTGAGGCTGCATCTGGA-- i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146670014 235 + 158406734 TCTACTTAACCCTGTA-CTGCTCCAGGAGAGACCCTCCCACATTGAGCCATTCAAATGGCAG--ATTCCATCATCAGCCTTACCTTCTGATCTAGACTTTGGGGCATGCTGAGTTCTCGCCTTCTGGGCCCTTGTCATTACTGTGGACTTCCAAGTTGAGTCATCTTTCTTTTGAGGAACCCGATCCACCACTTTGAGCTTCTTTTTGATTCCATGTCTAGGTGAGGCTGTCCCTGGA-- i calJac3.chr6 C 0 I 2 s tarSyr1.scaffold_81680 5179 234 + 9060 TTCGCCTAATGCGGAACCTGCTCCAGG--AGACTCTCCCATGCCAAGCTATCTGAATGGTAG--ATTCTATCATCAGCCTTACCCTTTGCTCTGGACGTTTGGGTACAGTCAATTTTCGCCTTTTGGGCTCTTGTCACTACCTTCAAGTTCCAGGTTGAGTCGTCCTTCCTTTGAGTCACTTGATCCATCACTTGGATCTTCTCCTGGATTCCATGCCTAGGTGAGGCTGTCCCTGGA-- i tarSyr1.scaffold_81680 C 0 I 2 s equCab2.chr6 17802717 237 + 84719076 TCCACCTAACCCAGTGCCTGCTCCATGACAGACCCTCCCACAGTGAGA-ATTCAAATAGAAG--ACTCCATCACCAGCCTCACCCTCTGGTCCAGATGTTTGGGCACATCCAGTCCTGGCTTTTTGGACCCTTGTCGTGACCTTTGAGTTCCTGGTTGAGTCGTCCTTCTTTTGAGTTGCCTGATCCACCACTTGGAGCTTCTCTTGGATTTCATCCCCAGGTGAGACTGTCCCTGGGCC i equCab2.chr6 C 0 C 0 e turTru2.JH490333 3411 6695 - 53618 I e vicPac1.scaffold_371 929656 352 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e tupBel1.scaffold_26703.1-1629 1069 348 + 1629 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 46815 10101 + 176633 I a score=5634.000000 s mm10.chr1_GL456221_random 23442 1 + 206961 G s rn5.chr9 92333034 1 + 121549591 A i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 5986 1 + 13480 A i dipOrd1.scaffold_37788 N 0 C 0 s speTri2.JH393335 4089719 1 - 10418462 A i speTri2.JH393335 I 2 C 0 s hg19.chr2 231067451 1 + 243199373 A i hg19.chr2 I 2 C 0 s panTro4.chr2B 235446699 1 + 247518478 A i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119399930 1 + 131632457 A i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 3603594 1 + 6458163 A i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 93999351 1 + 106825570 A i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146670251 1 + 158406734 A i calJac3.chr6 I 2 C 0 s tarSyr1.scaffold_81680 5415 1 + 9060 A i tarSyr1.scaffold_81680 I 2 C 0 s micMur1.scaffold_3075 56916 1 + 176633 A i micMur1.scaffold_3075 I 10101 C 0 s equCab2.chr6 17802954 1 + 84719076 A i equCab2.chr6 C 0 C 0 e turTru2.JH490333 3411 6695 - 53618 I e vicPac1.scaffold_371 929656 352 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e tupBel1.scaffold_26703.1-1629 1069 348 + 1629 I e dasNov3.JH566347 1745429 56161 + 1805508 I a score=-14380.000000 s mm10.chr1_GL456221_random 23443 2 + 206961 AG- s rn5.chr9 92333035 2 + 121549591 GA- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 5987 2 + 13480 AG- i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 4089720 2 - 10418462 AG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231067452 1 + 243199373 A-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446700 1 + 247518478 A-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399931 1 + 131632457 A-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603595 1 + 6458163 A-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93999352 1 + 106825570 A-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146670252 1 + 158406734 A-- i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_81680 5416 1 + 9060 A-- i tarSyr1.scaffold_81680 C 0 C 0 s micMur1.scaffold_3075 56917 1 + 176633 A-- i micMur1.scaffold_3075 C 0 C 0 s vicPac1.scaffold_371 930008 2 + 946679 -GG i vicPac1.scaffold_371 I 352 C 0 e turTru2.JH490333 3411 6695 - 53618 I e equCab2.chr6 17802955 0 + 84719076 C e felCat5.chrC1 212364380 19287 + 221441202 I e tupBel1.scaffold_26703.1-1629 1069 348 + 1629 I e dasNov3.JH566347 1745429 56161 + 1805508 I a score=-5821.000000 s mm10.chr1_GL456221_random 23445 2 + 206961 AC- s rn5.chr9 92333037 2 + 121549591 CA- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 5989 2 + 13480 CA- i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 4089722 2 - 10418462 AG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231067453 1 + 243199373 -A- i hg19.chr2 C 0 I 4 s panTro4.chr2B 235446701 1 + 247518478 -A- i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119399932 1 + 131632457 -A- i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 3603596 1 + 6458163 -A- i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 93999353 1 + 106825570 -A- i rheMac3.chr12 C 0 I 4 s calJac3.chr6 146670253 1 + 158406734 -A- i calJac3.chr6 C 0 I 4 s tarSyr1.scaffold_81680 5417 1 + 9060 -G- i tarSyr1.scaffold_81680 C 0 I 4 s micMur1.scaffold_3075 56918 1 + 176633 -G- i micMur1.scaffold_3075 C 0 I 6598 s tupBel1.scaffold_26703.1-1629 1417 1 + 1629 -G- i tupBel1.scaffold_26703.1-1629 I 348 I 1 s vicPac1.scaffold_371 930010 2 + 946679 -AC i vicPac1.scaffold_371 C 0 C 0 e turTru2.JH490333 3411 6695 - 53618 I e equCab2.chr6 17802955 0 + 84719076 C e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I a score=4909.000000 s mm10.chr1_GL456221_random 23447 1 + 206961 G s rn5.chr9 92333039 1 + 121549591 G i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 5991 1 + 13480 G i dipOrd1.scaffold_37788 C 0 N 0 s speTri2.JH393335 4089724 1 - 10418462 G i speTri2.JH393335 C 0 I 2 s hg19.chr2 231067458 1 + 243199373 G i hg19.chr2 I 4 C 0 s panTro4.chr2B 235446706 1 + 247518478 G i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119399937 1 + 131632457 G i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 3603601 1 + 6458163 G i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 93999358 1 + 106825570 G i rheMac3.chr12 I 4 C 0 s calJac3.chr6 146670258 1 + 158406734 G i calJac3.chr6 I 4 C 0 s tarSyr1.scaffold_81680 5422 1 + 9060 A i tarSyr1.scaffold_81680 I 4 C 0 s tupBel1.scaffold_26703.1-1629 1419 1 + 1629 G i tupBel1.scaffold_26703.1-1629 I 1 C 0 s vicPac1.scaffold_371 930012 1 + 946679 A i vicPac1.scaffold_371 C 0 C 0 e turTru2.JH490333 3411 6695 - 53618 I e equCab2.chr6 17802955 0 + 84719076 C e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=14346.000000 s mm10.chr1_GL456221_random 23448 5 + 206961 ACTCA s rn5.chr9 92333040 5 + 121549591 ACTCN i rn5.chr9 C 0 C 0 s speTri2.JH393335 4089727 5 - 10418462 ATTTG i speTri2.JH393335 I 2 C 0 s hg19.chr2 231067459 5 + 243199373 ACTTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446707 5 + 247518478 ACTTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399938 5 + 131632457 ACTTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603602 5 + 6458163 ACTTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93999359 5 + 106825570 ACTTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146670259 5 + 158406734 ACTTG i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_81680 5423 5 + 9060 ATTTG i tarSyr1.scaffold_81680 C 0 C 0 s tupBel1.scaffold_26703.1-1629 1420 5 + 1629 GGTTG i tupBel1.scaffold_26703.1-1629 C 0 I 38 s vicPac1.scaffold_371 930013 5 + 946679 AACAG i vicPac1.scaffold_371 C 0 C 0 s equCab2.chr6 17802955 5 + 84719076 AATAG i equCab2.chr6 C 0 C 0 e turTru2.JH490333 3411 6695 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=-13290.000000 s mm10.chr1_GL456221_random 23453 4 + 206961 ---TGTG s rn5.chr9 92333045 4 + 121549591 ---NNNN i rn5.chr9 C 0 C 0 s speTri2.JH393335 4089732 2 - 10418462 ---TG-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231067464 4 + 243199373 ---TTAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446712 4 + 247518478 ---TTAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119399943 4 + 131632457 ---TTAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603607 4 + 6458163 ---TTAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93999364 4 + 106825570 ---TTAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146670264 4 + 158406734 ---TGAA i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_81680 5428 4 + 9060 ---TCAG i tarSyr1.scaffold_81680 C 0 C 0 s vicPac1.scaffold_371 930018 4 + 946679 CGAT--- i vicPac1.scaffold_371 C 0 I 92 s equCab2.chr6 17802960 4 + 84719076 TGAT--- i equCab2.chr6 C 0 I 7 e turTru2.JH490333 3411 6695 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e tupBel1.scaffold_26703.1-1629 1425 38 + 1629 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=42427.000000 s mm10.chr1_GL456221_random 23457 33 + 206961 TGGTTGAAATGGAGGTTCCTGGAACA--------------------CTCCTTC s rn5.chr9 92333049 53 + 121549591 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTCTTTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4089734 25 - 10418462 --------ATTGGGGTCCACAGAGAG--------------------CTGCCCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231067468 34 + 243199373 TAGTTTAAATTGGGGTCTTCAGTGAG-------------------CCTCCTAC i hg19.chr2 C 0 I 2 s panTro4.chr2B 235446716 34 + 247518478 TAGTTTAAATTGGGGTCTTCAGTGAG-------------------CCTCCTAC i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119399947 34 + 131632457 TAGTTTAAATTGGGGTCTTCAGTGAG-------------------CCTCCTAC i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3603611 34 + 6458163 TAATTTAAACTGGGGTCTTCAGTGAG-------------------CCTCCTAC i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 93999368 34 + 106825570 TAGTTTAAATTGGGGTCTTCAGTGAG-------------------CCTCCTAC i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146670268 33 + 158406734 TAGTTTAAATTGGGGTCTTCAGT-AA-------------------CCTCCTAC i calJac3.chr6 C 0 I 2 s tarSyr1.scaffold_81680 5432 34 + 9060 TAGTTTAAATTGGGGTCCCCAGTGAG-------------------CCTTTTAC i tarSyr1.scaffold_81680 C 0 C 0 s equCab2.chr6 17802971 33 + 84719076 TAGCTTTGACTGGGGTCCCCAGTGGA-------------------CCTCCTC- i equCab2.chr6 I 7 C 0 e turTru2.JH490333 3411 6695 - 53618 I e vicPac1.scaffold_371 930022 92 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e tupBel1.scaffold_26703.1-1629 1425 38 + 1629 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=10519.000000 s mm10.chr1_GL456221_random 23490 8 + 206961 -CTTCCTTC s rn5.chr9 92333102 8 + 121549591 -CTTTCTTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4089759 8 - 10418462 -TTCCCCTC i speTri2.JH393335 C 0 I 395 s hg19.chr2 231067504 8 + 243199373 -TCCCAATC i hg19.chr2 I 2 C 0 s panTro4.chr2B 235446752 8 + 247518478 -TCCCAATC i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119399983 8 + 131632457 -TCCCAATC i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 3603647 8 + 6458163 -TCCCAATC i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 93999404 8 + 106825570 -TCCCAATC i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146670303 8 + 158406734 -TCCCAATC i calJac3.chr6 I 2 C 0 s tarSyr1.scaffold_81680 5466 7 + 9060 --TCCGATC i tarSyr1.scaffold_81680 C 0 C 0 s tupBel1.scaffold_26703.1-1629 1463 8 + 1629 -TGGCCATC i tupBel1.scaffold_26703.1-1629 I 38 C 0 s equCab2.chr6 17803004 8 + 84719076 CTCCCCAT- i equCab2.chr6 C 0 C 0 e turTru2.JH490333 3411 6695 - 53618 I e vicPac1.scaffold_371 930022 92 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=11812.000000 s mm10.chr1_GL456221_random 23498 6 + 206961 ---ATAGGC-------- s rn5.chr9 92333110 6 + 121549591 ---ACAGAC-------- i rn5.chr9 C 0 C 0 s hg19.chr2 231067512 6 + 243199373 ---AGTGAC-------- i hg19.chr2 C 0 I 5 s panTro4.chr2B 235446760 6 + 247518478 ---AGTGAC-------- i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 119399991 6 + 131632457 ---AGTGAC-------- i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 3603655 6 + 6458163 ---AGTGAC-------- i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 93999412 6 + 106825570 ---AGTGAC-------- i rheMac3.chr12 C 0 I 5 s calJac3.chr6 146670311 6 + 158406734 ---AGTGAC-------- i calJac3.chr6 C 0 I 5 s tarSyr1.scaffold_81680 5473 6 + 9060 ---AGTGAC-------- i tarSyr1.scaffold_81680 C 0 I 5 s tupBel1.scaffold_26703.1-1629 1471 6 + 1629 ---AGTGAT-------- i tupBel1.scaffold_26703.1-1629 C 0 N 0 s equCab2.chr6 17803012 17 + 84719076 ATTAGTGCCCTCCCTTC i equCab2.chr6 C 0 C 0 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 3411 6695 - 53618 I e vicPac1.scaffold_371 930022 92 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=19305.000000 s mm10.chr1_GL456221_random 23504 11 + 206961 TCCCCAT---CCCA s rn5.chr9 92333116 11 + 121549591 TTCGCAT---TCTA i rn5.chr9 C 0 C 0 s hg19.chr2 231067523 14 + 243199373 TTCTCATGCCCCTA i hg19.chr2 I 5 C 0 s panTro4.chr2B 235446771 14 + 247518478 TTCTCATGCCCCTA i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 119400002 14 + 131632457 TTCTCATGCCCCTA i gorGor3.chr2B I 5 C 0 s nomLeu2.GL397366 3603666 14 + 6458163 TTCTCATGGCCCTA i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 93999423 14 + 106825570 TTCTCATGCTCCCA i rheMac3.chr12 I 5 C 0 s calJac3.chr6 146670322 14 + 158406734 TTCTCCTCCCTCTA i calJac3.chr6 I 5 C 0 s tarSyr1.scaffold_81680 5484 14 + 9060 TTCACATACTACAA i tarSyr1.scaffold_81680 I 5 C 0 s equCab2.chr6 17803029 11 + 84719076 ---TCCTGGTCCCG i equCab2.chr6 C 0 C 0 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 3411 6695 - 53618 I e vicPac1.scaffold_371 930022 92 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=2063.000000 s mm10.chr1_GL456221_random 23515 4 + 206961 GCCC- s rn5.chr9 92333127 4 + 121549591 CCTC- i rn5.chr9 C 0 C 0 s hg19.chr2 231067537 4 + 243199373 ACTC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446785 4 + 247518478 ACTC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119400016 4 + 131632457 ACTC- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603680 4 + 6458163 ACTC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93999437 4 + 106825570 ACTC- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146670336 4 + 158406734 ACTC- i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_81680 5498 4 + 9060 GCCC- i tarSyr1.scaffold_81680 C 0 C 0 s vicPac1.scaffold_371 930114 3 + 946679 --TCT i vicPac1.scaffold_371 I 92 I 4 s equCab2.chr6 17803040 4 + 84719076 -GTCT i equCab2.chr6 C 0 C 0 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 3411 6695 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=6017.000000 s mm10.chr1_GL456221_random 23519 2 + 206961 CT s rn5.chr9 92333131 2 + 121549591 CC i rn5.chr9 C 0 C 0 s hg19.chr2 231067541 2 + 243199373 CC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446789 2 + 247518478 CC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119400020 2 + 131632457 CC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603684 2 + 6458163 CC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93999441 2 + 106825570 CA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146670340 2 + 158406734 CC i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_81680 5502 2 + 9060 CC i tarSyr1.scaffold_81680 C 0 C 0 s equCab2.chr6 17803044 2 + 84719076 CC i equCab2.chr6 C 0 C 0 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 3411 6695 - 53618 I e vicPac1.scaffold_371 930117 4 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=3276.000000 s mm10.chr1_GL456221_random 23521 1 + 206961 A s hg19.chr2 231067543 1 + 243199373 A i hg19.chr2 C 0 I 3 s panTro4.chr2B 235446791 1 + 247518478 A i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119400022 1 + 131632457 A i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 3603686 1 + 6458163 A i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 93999443 1 + 106825570 A i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146670342 1 + 158406734 A i calJac3.chr6 C 0 I 3 s tarSyr1.scaffold_81680 5504 1 + 9060 A i tarSyr1.scaffold_81680 C 0 I 3 s equCab2.chr6 17803046 1 + 84719076 A i equCab2.chr6 C 0 I 3 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 3411 6695 - 53618 I e vicPac1.scaffold_371 930117 4 + 946679 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I e rn5.chr9 92333133 0 + 121549591 C a score=15488.000000 s mm10.chr1_GL456221_random 23522 4 + 206961 TTCC s rn5.chr9 92333133 4 + 121549591 TTCC i rn5.chr9 C 0 C 0 s hg19.chr2 231067547 4 + 243199373 TTTC i hg19.chr2 I 3 C 0 s panTro4.chr2B 235446795 4 + 247518478 TTTC i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119400026 4 + 131632457 TTTC i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3603690 4 + 6458163 TTTC i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 93999447 4 + 106825570 TTTC i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146670346 4 + 158406734 TTTC i calJac3.chr6 I 3 C 0 s tarSyr1.scaffold_81680 5508 4 + 9060 TTTC i tarSyr1.scaffold_81680 I 3 I 3 s vicPac1.scaffold_371 930121 4 + 946679 TCCC i vicPac1.scaffold_371 I 4 N 0 s turTru2.JH490333 10106 4 - 53618 TTTA i turTru2.JH490333 I 6695 C 0 s equCab2.chr6 17803050 4 + 84719076 TTTG i equCab2.chr6 I 3 C 0 e speTri2.JH393335 4089767 395 - 10418462 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=5005.000000 s mm10.chr1_GL456221_random 23526 1 + 206961 A s rn5.chr9 92333137 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231067551 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235446799 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119400030 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3603694 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 93999451 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146670350 1 + 158406734 A i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_81680 5515 1 + 9060 A i tarSyr1.scaffold_81680 I 3 C 0 s turTru2.JH490333 10110 1 - 53618 A i turTru2.JH490333 C 0 I 10928 s equCab2.chr6 17803054 1 + 84719076 A i equCab2.chr6 C 0 C 0 e speTri2.JH393335 4089767 395 - 10418462 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=71211.000000 s mm10.chr1_GL456221_random 23527 33 + 206961 GGTGAATATACCTCACTTTTGCTGTTTTCTCTT------------------------------- s rn5.chr9 92333138 33 + 121549591 GATCGCTGTACCTCACTTTTACTGTTTTCTCCT------------------------------- i rn5.chr9 C 0 C 0 s hg19.chr2 231067552 33 + 243199373 GATCTCTGTACCCCTGTACCTCACTTTTCTCCT------------------------------- i hg19.chr2 C 0 I 31 s panTro4.chr2B 235446800 33 + 247518478 GATCTCTGTACCCCTGTACCTCACTTTTCTCCT------------------------------- i panTro4.chr2B C 0 I 31 s gorGor3.chr2B 119400031 33 + 131632457 GATCTCTGTACCCCTGTACCTCACTTTTCTCCT------------------------------- i gorGor3.chr2B C 0 I 31 s nomLeu2.GL397366 3603695 32 + 6458163 GATCTCTGTA-CCCTGTACCTCACTTTTCTCCT------------------------------- i nomLeu2.GL397366 C 0 I 31 s rheMac3.chr12 93999452 33 + 106825570 GATCTCTGTACTCCTGTACTTCACTTTTCTCCT------------------------------- i rheMac3.chr12 C 0 I 5291 s calJac3.chr6 146670351 33 + 158406734 GATCTCTGTACCCCGGTACCTCACTTTTCTCCT------------------------------- i calJac3.chr6 C 0 I 31 s tarSyr1.scaffold_81680 5516 33 + 9060 GATCTCTGTATTCTTGTGCCTAATTTTTTTCCC------------------------------- i tarSyr1.scaffold_81680 C 0 I 32 s equCab2.chr6 17803055 64 + 84719076 GATCTCTGTACCCCTGTGCCCTGCTTTTCTCCTGCTGTTTCTCTCTGATTACATGTTTCTTCTT i equCab2.chr6 C 0 C 0 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=146074.000000 s mm10.chr1_GL456221_random 23560 76 + 206961 ATGTGCACCATGCTTTCTCCCCCCACA-TCACCATAAGTTCCCACCCCAGG----GAGCTCTTATAAGAATTAACTAGGTa s rn5.chr9 92333171 77 + 121549591 ATGTGCACCTCACTTTCTCCCCCCAAAGTCATCACATTCTCCCGccccagg----gagctctcataagaagtaaccaggta i rn5.chr9 C 0 C 0 s hg19.chr2 231067616 76 + 243199373 ATGTGTACCTTTCTTTGCCTCCCCAAA-TTACCATCTGCTTTCACTCCTGG----TATGACCTGTTGCAATCAACTAGATA i hg19.chr2 I 31 I 4 s panTro4.chr2B 235446864 76 + 247518478 ATGTGTACCTTTCTTTGCCTCCCCAAA-TTACCATCTGCTTTCACTCCTGG----TATGACCTGTTGCAATCAACTAGATA i panTro4.chr2B I 31 I 2 s gorGor3.chr2B 119400095 76 + 131632457 ATGTGTACCTTTCTTTGCCTCCCCAAA-TTACCATCTGCTTTCACTCCTGG----TATGACCTGTTGCAATCAACTAGATA i gorGor3.chr2B I 31 I 2 s nomLeu2.GL397366 3603758 76 + 6458163 ATGTGTACCTTTCTTTGCCTCCCCAAA-TTACCATCTGCTTTCACTCCTGG----TATGACTTGTTGCAATCAACTAGATA i nomLeu2.GL397366 I 31 I 2 s calJac3.chr6 146670415 76 + 158406734 ATGTGTACCTTTCTTTGTCTCCCCAGA-TTACCATCTGCTCTCACTCCTGG----TATGACCTGTTGTAGTCAACTAGATA i calJac3.chr6 I 31 I 2 s tarSyr1.scaffold_81680 5581 78 + 9060 --ATGTGCCTTTCTTTGTCCCCCCGAA-TCACCATCTGCTGTCCCTCCAGGTACCTACTACCTGTTGAAATCAACTAGGTA i tarSyr1.scaffold_81680 I 32 N 0 s equCab2.chr6 17803119 76 + 84719076 GTGGGCACCTTTCGTTTTCCTTCAAAC-TCACCATCTGACCTCACCCTCTG----TACAACCTGTTGGAAGCAACCAGATA i equCab2.chr6 C 0 C 0 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 93999485 5291 + 106825570 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=7886.000000 s mm10.chr1_GL456221_random 23636 6 + 206961 --gctggg s rn5.chr9 92333248 6 + 121549591 --gcctgg i rn5.chr9 C 0 C 0 s panTro4.chr2B 235446942 6 + 247518478 --GCTGGG i panTro4.chr2B I 2 I 5932 s gorGor3.chr2B 119400173 6 + 131632457 --GCTGGG i gorGor3.chr2B I 2 I 4880 s nomLeu2.GL397366 3603836 6 + 6458163 --GCTGGG i nomLeu2.GL397366 I 2 I 4846 s calJac3.chr6 146670493 6 + 158406734 --TCTGGG i calJac3.chr6 I 2 I 4401 s equCab2.chr6 17803195 8 + 84719076 AATCTGGG i equCab2.chr6 C 0 I 6016 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 93999485 5291 + 106825570 I e hg19.chr2 231067692 4 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=9186.000000 s mm10.chr1_GL456221_random 23642 194 + 206961 cagtgctggtgcacacatttaatcctggcacttg------agaggcagaggcaggcaggtatccgtgagtttttgatttcttgaggccagcctggtttacagagctagttccaggacatccaagggcacacaaagaaaaatc--------aaaccaaaccaaaaccaaaccaa---ccaaac---AAACAAAGATTTAACCAAATAAATAAATA s rn5.chr9 92333254 209 + 121549591 tagagctggtgcatccctttaatcccagcgagtgggaggcagaggcagagacaggcaaatctctgtgagcttt-gatttcttgaggtcagcctggtttacagagcaagttccaggacagcccgggcaacacaaagaaaccctgtcttgaaaaacaaaaccaaacccaaacccaaacccaaacccaaaACAAAAAATTAGCCAAATAAATA---- i rn5.chr9 C 0 C 0 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 93999485 5291 + 106825570 I e equCab2.chr6 17803203 6016 + 84719076 I e nomLeu2.GL397366 3603842 4846 + 6458163 I e gorGor3.chr2B 119400179 4880 + 131632457 I e panTro4.chr2B 235446948 5932 + 247518478 I e hg19.chr2 231067692 4 + 243199373 I e calJac3.chr6 146670499 4401 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=20851.000000 s mm10.chr1_GL456221_random 23836 372 + 206961 TGGAGGGATTCGGGATCAGGGCAGATTCTGATTCCTGTTTCTAAGAC-TTGTAAACCATGAGGCACAGGCCTGGGATTTTTCAGGCAGTGAGGAAGGGACTTCC----ATGTAGC---------------------ACCCATGTTCAG-ACAGGCAACACCCGAAGGCCACTGGGCACCTCT-------AAAGC----------------ATCGCAGGGACATCCCTATGCCTGTCGT-GAAGACAGCTTC--TGGGCAAG---------GGGTGGCAGAGGCCCAGAGGCTCTGCAGTGGACAGGACTGGTGGATGGATGAGTGGCCTTCACTGAGGAG-GGGAGGACACAGCACTTTTTCCTCTCG-GGACTTTGGAAGCTGCCTCCCCAAGGACAGCTGCA-TCCACAGGCATGAGAACACCTTTCTGAAGCTT s rn5.chr9 92333463 386 + 121549591 TGGAACGATTGGGGATGGGGGGGTGATTTCTGACTGGTTTCTAAGAC-TCATGAACCACGAGGC------CTGGGATACTTCAGGGGGTGAGGAAGGGCCTTCCTTCCATGTAGC--------------------TACCCATGTGCAG-ACAGGCAACATCCAAAGGCCACCAGGCACCTTTTGTGGGTGAAGT----------------AACGAAGGGACAGCCCTATGCCTGCCATTGAAGGCAGCTTC--TGGGCGAGCCACCAGAGAGGCTGCGGAGGCCCTGAGGTTCTGCAGTGGGCAGGACTGGTGGAGT----AGTGGCCTTCGCTGAGGAGAGGGAGGACAGGGCACTTTTTCCTGTTG-GGACTGTGGAAGCTGCCTCCCACAGGACAGCCACACTGCACTGGCAGGAGAGCTCCTCTCAACAGCTT i rn5.chr9 C 0 C 0 s hg19.chr2 231067696 413 + 243199373 TGGGGAAATCCTAGA-----GCTTATTTCCTGATTTTCGTTTGTGTCGGCCTGCACCACGAGGTGGCCACACAGTCTCGTCTAggtggagaggaggtgtctt------ataaagcacctctccaggttcccccacggcctgtgtgtggtacaagagatttccaaaagtttctaggtgccttcagtgggcaaagtgcaaggtattaaaaaaactgAGAGGGAAGGAC----CCTGCCAA-GAAGGCGGCTACCATGAGGGAGAGATGGAAGGTGAGGCTGAGACCCAGAGGAGGTGCAAT-GCCAGAG--GGTGCAGAGGTGAGTTTGCTTCATTGTGGAAAAAGAACACA----ATTTTCACCGGCTGTTGACTTTAGAAGCTG-ATCCCACAGGATGACCGCTGTCCTGTTGAACAAGAACGTTTCTCTGCAGGTT i hg19.chr2 I 4 I 4416 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 93999485 5291 + 106825570 I e equCab2.chr6 17803203 6016 + 84719076 I e nomLeu2.GL397366 3603842 4846 + 6458163 I e gorGor3.chr2B 119400179 4880 + 131632457 I e panTro4.chr2B 235446948 5932 + 247518478 I e calJac3.chr6 146670499 4401 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=2326.000000 s mm10.chr1_GL456221_random 24208 36 + 206961 TTCTGGGGGCTTTTCCTCTGAACTGCCTCTCAGGGC s rn5.chr9 92333849 35 + 121549591 CTCTGGGG-CTTTTCCTGTGAATTACCTCTCAGGGC i rn5.chr9 C 0 C 0 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 93999485 5291 + 106825570 I e equCab2.chr6 17803203 6016 + 84719076 I e nomLeu2.GL397366 3603842 4846 + 6458163 I e gorGor3.chr2B 119400179 4880 + 131632457 I e panTro4.chr2B 235446948 5932 + 247518478 I e hg19.chr2 231068109 4416 + 243199373 I e calJac3.chr6 146670499 4401 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=5574.000000 s mm10.chr1_GL456221_random 24244 40 + 206961 TAGGACCCAGGCTCTTCTGCACCTTATCTCAAAGTAGCAA s rn5.chr9 92333884 40 + 121549591 GAGGACCCAGGTTCATTTGCCCTTTTTCTGAAAGTAGCAT i rn5.chr9 C 0 C 0 s calJac3.chr6 146674900 40 + 158406734 tggaatccagatctttTTCCACTTTATCTCAAAACAGCAA i calJac3.chr6 I 4401 C 0 e speTri2.JH393335 4089767 395 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 93999485 5291 + 106825570 I e equCab2.chr6 17803203 6016 + 84719076 I e nomLeu2.GL397366 3603842 4846 + 6458163 I e gorGor3.chr2B 119400179 4880 + 131632457 I e panTro4.chr2B 235446948 5932 + 247518478 I e hg19.chr2 231068109 4416 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=13455.000000 s mm10.chr1_GL456221_random 24284 100 + 206961 AGTTTATTTACTCTCCCTTTAGTTAG--GAAG-------GATGGTTG---CCATCCTAGTGTGTATAAATAAAGAGGAAACCTGACACTCTGCACCCTTCACCT-TGGGCTGT s rn5.chr9 92333924 96 + 121549591 AGTTTACTTACTCTCCCTTTAGTTGG--GAAG-------GTTGGTTG---CCCTCCTAAAGTATGTAAA----GAGGAAACCTGATACTCTCTACCCTTCACCT-TGGACTGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4090162 99 - 10418462 AATTTTCTAATTCTCCCTTTAGTCGGTAAAAG-------GATGGTGGTCCCCATCATCATGTACATAAA-----CTAAAACCCACCCCCTTCCATTCTTTGACT-GGGG-GAT i speTri2.JH393335 I 395 C 0 s calJac3.chr6 146674940 104 + 158406734 AGCTTTTTTCTTTTCCTTTCTTTCAG--GAGGAGAGGACGATGGCTG---TCCCTGTCATGTATCTAAA----CAGAAAGTCCATCCTTCTCCATCCCTTATATATGAGTTGT i calJac3.chr6 C 0 I 571 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 93999485 5291 + 106825570 I e equCab2.chr6 17803203 6016 + 84719076 I e nomLeu2.GL397366 3603842 4846 + 6458163 I e gorGor3.chr2B 119400179 4880 + 131632457 I e panTro4.chr2B 235446948 5932 + 247518478 I e hg19.chr2 231068109 4416 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=662.000000 s mm10.chr1_GL456221_random 24384 26 + 206961 GTAACCT-----CAGAACAGGA----TTCCAACAT s rn5.chr9 92334020 31 + 121549591 GTAACCTGCCATCAGGACAGGA----TTCCAGTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4090261 35 - 10418462 GTGATCTGTCACCTGCACTGAAAGCctcttgctca i speTri2.JH393335 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 93999485 5291 + 106825570 I e equCab2.chr6 17803203 6016 + 84719076 I e nomLeu2.GL397366 3603842 4846 + 6458163 I e gorGor3.chr2B 119400179 4880 + 131632457 I e panTro4.chr2B 235446948 5932 + 247518478 I e hg19.chr2 231068109 4416 + 243199373 I e calJac3.chr6 146675044 571 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=485752.000000 s mm10.chr1_GL456221_random 24410 322 + 206961 GTTCCAGTTCACCATTTACTCAGTGGCAAAACAGGTCTGCTGAAATTTAAAGCCAGTTCG-----CTGTGCTGACCAGAACTCCTGTGTG-----CCTGCCTATCCAGTGAGTTCAGAACGAACTCCA-----------TCAGATCTACAGCCTTTGCTGAAGCCTCCTCCTGTACCCCT------TGCTGGAGTCTCCTCCAGCATCCC------------CTTACCCATCATCTCTTCTTGACGGGGCTTTTTTTTCTGCAGTCCTCTTTTGGAATTTGACCAGTTCGGACATTTTTTTCTTCTTGCTAAGAAGAAAACAAAACAAAGTCTTTTATAGT----CACATAGAGCTGTCAG--TCTT s rn5.chr9 92334051 319 + 121549591 GCTCCAGTT----------------GTGAAACAAGTCTGGTGAAATTTAAAGCCAGATCA-----CTGCGCTGCCTAGAACTCCTGTGTG-----CCT----ATCCAGTAAGTTCAGAACAAGTGGCA-----------ACAGATCCACAGCCCT-GCCAGAGCCCCCTCCAGCATCCCCCAGCCCTGCCAGAGCCCCCTCCAGCATCCCTTTCAGCATCTTCTTACCCATCATCTTATGTTGAGGGGGCTTTTTTTTCTGCCGTCTTCTTTTGGAATTTGACCAGATGCAACTTTTTCTTTTTCTTGCTAAGAAGAAAAGAGAACA--GTCTTTTATAGT----CATGTAAAGCTTTCAAACtttt i rn5.chr9 C 0 C 0 s speTri2.JH393335 4090296 319 - 10418462 tctccagtccactttgtacacagcagcgaactcgctcttgtgaactttaaaatcaggtcaggtcccttgactgctgagagctcttcaatgacaccccCCCCCCCCGACTGCTTTTGGAATACGATTCAACCCCCT---TTCCCAACTACAGGCCT-GA-AGAGCTCCCCGCGGGTCCC---------------GCCTCCTCT--CATTCT------------GTTACCTCTC------------GGGCAGCTTTTTTTCTGACGTCTCTTTTTTGGAGTTGACCAGATATTTCTTCTTATTTTTCTTCCTAAAAAAGAAAAGATAAAGAATCTTTTATGGTTACACATACAGATCTGCCGG--CCTT i speTri2.JH393335 C 0 I 780 s hg19.chr2 231072525 301 + 243199373 gctccaactcattctttacaccgtagcaaaat--------tgagctt--acattgtgtca-----cttcactgactaaatctcttcaatg-----gct----tcccattgcatttagaataaaattcaaccctccacagcttgacctacaagccctgcatgagctgtttccagcctcc--------------agcttcctcttgtactct---------catcttaccTCCT------------GGGAGGCTTTTTTTCTTATGTCTCCTTTTTGGAGTTGACCAGATACATCTTTTTCTTTTCTTTCCTAAAAAGAAAGGATAATG-----TTTTATAGTTACAAACATTGATCTCCCAA--TCTT i hg19.chr2 I 4416 C 0 s panTro4.chr2B 235452880 301 + 247518478 gctccaactcattctttgcaccgtagcaaaat--------tgagctt--acgttgtgtca-----cttcactgactaaatctcttcaatg-----gct----tcccattgcatttagaataaaattcaaccctccacagcttgacctacaagccccgcataagctgtttccagcctcc--------------agcttcctcttgtactct---------catcttacctctT------------GGGAGGCTTTTTTTCTTATGTCTCCTTTTTGGAGTTGACCAGATACATCTTTTTCTTTTCTTTCCTAAAAAGAAAGGATAATG-----TTTTATAGTTACAAACATTGATCTTCCAA--TCTT i panTro4.chr2B I 5932 C 0 s gorGor3.chr2B 119405059 301 + 131632457 gctccaactcattctttacactgtagcaaaat--------tgagctt--acgttgtgtca-----cttcactgactaaatctctgcaatg-----gct----tcccattgcatttagaataaaattcaaccctccacagcttgacctacaagccctgcatgagctgtttccagcctcc--------------agcttcctcttgtactct---------catcttacctctT------------GGGAGGCTTTTTTTCTTATGTCTCCTTTTTGGAGTTGACCAGATACATCTTTTTCTTTTCTTTCCTAAAAAGAAAGGATAATG-----TTTTATAGTTACAAACATTGATCTCCCAA--TCTT i gorGor3.chr2B I 4880 C 0 s nomLeu2.GL397366 3608688 301 + 6458163 gctccaactcattctttacatcatagcaaaat--------tgagctt--gcattgtgtca-----attcactgactaaatctcttcaatg-----gct----tcccattgcatttagaataaaattaaaccctccacagcttgacctataagccctgcatgagctgtttccagcctcc--------------agcttcctcttgtactct---------catcttacctctT------------GGGAGGCTTTTTTTCTTAGGTCTCTTTTTTGGAGTTGACCAGATACATCTTTTTCTTTTCTTTCCTAAAAAGAAAGGATACTG-----TTTTATAATTACAAACATTGACCTCCCAA--TCTT i nomLeu2.GL397366 I 4846 C 0 s rheMac3.chr12 94004776 301 + 106825570 gctccaactcattctttacactgtagcaaaat--------tgagctt--ggattgtgtca-----cttcactgactaaatctcttcaatg-----gct----tcccattgcatttagaataaaattcaatcctccacagcttgacctataagccctgcatgagctgtttccAGCCTCC--------------AGCTTTCTCTTGTACTCT---------CGTCTTACCTCTT------------GGGAGGCTTTTTTTCTTATGTTTCCTTTTTGGAGTTGACCAGACACATCTTTTTCTTTTCTTTCCTAAAAAGAAAGGATAATG-----TTTTATAGTTACAAACATTGATCTCCCAA--TCTT i rheMac3.chr12 I 5291 C 0 s calJac3.chr6 146675615 295 + 158406734 gctccaactcactctttatacagtagcaaaat--------tgagctt--agattctgtca-----ctccaccgattaaatctcttcagtg-----gct----tcccattgcatctagaataaaattcagccctgcgcagcttgacctttaagccctgcatgagctgtctccagcctcc--------------agcttcttcttttactct---------catcttacctctT------------GGGAGGTTTTTTTTCTTCTGTCTCTTTTTTGGAGTTGACCAGATACATCTTTTACTTTTCTTCCCTAAAAAGAAAGGATAATA-----TTTTATAG------ATATTGATCTGCCAA--TCTT i calJac3.chr6 I 571 C 0 e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17803203 6016 + 84719076 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=30887.000000 s mm10.chr1_GL456221_random 24732 20 + 206961 -TTTATTTAAAGAATTCAACT s rn5.chr9 92334370 20 + 121549591 -tttatttaaaaaattaaatt i rn5.chr9 C 0 C 0 s hg19.chr2 231072826 21 + 243199373 GTATGTCAATGATATTCAGCT i hg19.chr2 C 0 I 958 s panTro4.chr2B 235453181 21 + 247518478 GTATGTCAATGATATTCAGCT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119405360 21 + 131632457 GTATGTCAATGATATTCAGCT i gorGor3.chr2B C 0 I 970 s nomLeu2.GL397366 3608989 21 + 6458163 GTATGTCAGTGATATTCAGCT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94005077 21 + 106825570 ATATGTCAGTGATATTCAGCT i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146675910 21 + 158406734 ATATGTCAGTGATATTCAGCT i calJac3.chr6 C 0 I 1 e speTri2.JH393335 4090615 780 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17803203 6016 + 84719076 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=6666.000000 s mm10.chr1_GL456221_random 24752 15 + 206961 ATGTTTTTGACTGTT s rn5.chr9 92334390 15 + 121549591 atatttttGCTTATT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235453203 14 + 247518478 TTACTTTTGGTGTT- i panTro4.chr2B I 1 I 970 s nomLeu2.GL397366 3609011 14 + 6458163 TTACTTTTGGCCTT- i nomLeu2.GL397366 I 1 I 1 s rheMac3.chr12 94005099 14 + 106825570 TTACTTTTGGCCTT- i rheMac3.chr12 I 1 I 1 s calJac3.chr6 146675932 14 + 158406734 TTACTTTTGGCCTT- i calJac3.chr6 I 1 I 1 e speTri2.JH393335 4090615 780 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17803203 6016 + 84719076 I e gorGor3.chr2B 119405381 970 + 131632457 I e hg19.chr2 231072847 958 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=476.000000 s mm10.chr1_GL456221_random 24767 2 + 206961 AA s rn5.chr9 92334405 2 + 121549591 GT i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3609026 2 + 6458163 AA i nomLeu2.GL397366 I 1 I 952 s rheMac3.chr12 94005114 2 + 106825570 AA i rheMac3.chr12 I 1 I 999 s calJac3.chr6 146675947 2 + 158406734 AA i calJac3.chr6 I 1 I 946 e speTri2.JH393335 4090615 780 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17803203 6016 + 84719076 I e gorGor3.chr2B 119405381 970 + 131632457 I e panTro4.chr2B 235453217 970 + 247518478 I e hg19.chr2 231072847 958 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=2826.000000 s mm10.chr1_GL456221_random 24769 70 + 206961 TTGTGCACTTGCACGCGTGT------------------------ATATGTGTATGTTTTAACTCCGAGTTATCTCTCTGATCTCAACCC-TAACC s rn5.chr9 92334407 95 + 121549591 GTGTACACGTGTACACTtgtgtgtgtgtgtgtgtgtgtgtgcgcatatgtgtgtgtCTTAACCCTAAGCCATCTCTCCAACCTCAACCCCTAACC i rn5.chr9 C 0 C 0 e speTri2.JH393335 4090615 780 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94005116 999 + 106825570 I e equCab2.chr6 17803203 6016 + 84719076 I e nomLeu2.GL397366 3609028 952 + 6458163 I e gorGor3.chr2B 119405381 970 + 131632457 I e panTro4.chr2B 235453217 970 + 247518478 I e hg19.chr2 231072847 958 + 243199373 I e calJac3.chr6 146675949 946 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=961.000000 s mm10.chr1_GL456221_random 24839 14 + 206961 -TTTTTAAATGATCA- s rn5.chr9 92334502 14 + 121549591 -TTTTTAAAGGATCA- i rn5.chr9 C 0 C 0 s equCab2.chr6 17809219 14 + 84719076 ttttttaa--GATTGG i equCab2.chr6 I 6016 C 0 e speTri2.JH393335 4090615 780 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94005116 999 + 106825570 I e nomLeu2.GL397366 3609028 952 + 6458163 I e gorGor3.chr2B 119405381 970 + 131632457 I e panTro4.chr2B 235453217 970 + 247518478 I e hg19.chr2 231072847 958 + 243199373 I e calJac3.chr6 146675949 946 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=1883.000000 s mm10.chr1_GL456221_random 24853 1 + 206961 G s rn5.chr9 92334516 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4091395 1 - 10418462 G i speTri2.JH393335 I 780 C 0 s hg19.chr2 231073805 1 + 243199373 g i hg19.chr2 I 958 C 0 s panTro4.chr2B 235454187 1 + 247518478 g i panTro4.chr2B I 970 C 0 s gorGor3.chr2B 119406351 1 + 131632457 g i gorGor3.chr2B I 970 C 0 s nomLeu2.GL397366 3609980 1 + 6458163 G i nomLeu2.GL397366 I 952 C 0 s equCab2.chr6 17809233 1 + 84719076 G i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94005116 999 + 106825570 I e calJac3.chr6 146675949 946 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=49287.000000 s mm10.chr1_GL456221_random 24854 32 + 206961 CTGGG--AAGGAAGAAGATATCAGAGTTTTGAA--C s rn5.chr9 92334517 31 + 121549591 CTGGG--AAGGAAGGAGAAATCAGAGGTT-GAA--C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4091396 29 - 10418462 CTGAG--AAGG----AGAGATCGGAAGTT-GAAGGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231073806 27 + 243199373 ctggg--aaag----agtgatcagaggtt-gaa--t i hg19.chr2 C 0 I 8 s panTro4.chr2B 235454188 26 + 247518478 ctggg--aaag----agtgatcagaggtt-gaa--- i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 119406352 27 + 131632457 ctggg--aaag----agtgatcagaggtt-gaa--t i gorGor3.chr2B C 0 I 8 s nomLeu2.GL397366 3609981 27 + 6458163 CTGGG--AAAG----AGTGATCGGAGGTT-GAA--T i nomLeu2.GL397366 C 0 I 8 s rheMac3.chr12 94006115 29 + 106825570 CTGGGAAAAAG----AGTGATCAGAGGTT-GAA--T i rheMac3.chr12 I 999 I 8 s equCab2.chr6 17809234 27 + 84719076 CTGAG--GAGG----AGATATCAGAAGTT-GAA--C i equCab2.chr6 C 0 I 8 e turTru2.JH490333 10111 10928 - 53618 I e calJac3.chr6 146675949 946 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=674118.000000 s mm10.chr1_GL456221_random 24886 306 + 206961 TAGAAGGAGCAAGCTTCAAGGACAAGTGTTAAAATGA-GAATTCTTTGAATCAGTTCTTGGGAAATTAAGCTAGGGAACAGATAATGGTAGATCCTAAGGATGACTTCTGGGCATGAGAAACCAAGAATTTGTGAAGGGAAAACAAGAACCAGACATGAGGAGATAAA-GACTTGAGCAGCTGGAGTATTGGATCAT----TTGCCTGCTATCC---CAGCACTTGAAAGCATCCAGGACCATGGAAAGAACTGAGGTGGGAGAAA-AC--------GGACTTGGAAGGCTTCCAGGAAGCAATGGGGAAACCAATGGATGACA s rn5.chr9 92334548 305 + 121549591 TAGAAGGAACAAGCTTCAAGGACAGGTATTAAAATGA-GAATTCTTTGAATCAGTTATTGGGAAATTAAGCTAGGGT-CAGATATTGGTAGG--GTATGGATGGCTTTTGGACATGAGAAATGAAGAATTTGAGAAGGGAAAAAAATAACCAGACGTGAGGAGATAAA-GACGTAAGTGGCTGGAGTAGTGGATGGC----TTGCCTGCTACCCAT-GATGCCTTGAAGGTATCCAGGATCATGGCAAGATCTGAGGCGGGAGAAA-AC--------AGACTTGGAAGGCTTCTAGGAAGCAATGGGGAAGCCAATGGATGGCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4091425 295 - 10418462 CAGTTGTAGAAAACTTGAAGAACAGGTATCAGAAGAG-GAATGTTT------AATTACTGGGAAATCAGGCT---GTCTGGGTGATGGTAAGGCCTGTGGATTGC-TCTGGGCACAGGCAGCCAAGAATTTGT--AGAGGAAAAAGTCACTGGAAATGAGCAGATGAC-GGGCTGAGAGGCCAGAGTACTGGACGGC----CCCTCTGCTGTCTTCATGGGTCCTGCAGGCATCCAGGACTAAGGTGGGACCTGAGGTGACAGAAATGC--------AGCCTCAG--GCCAACTAAGGAGGGAC-GGGAAGCCAACAGATGAGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231073841 303 + 243199373 taaaaggagaaaagctcaaggacaggtatcaaaaaag-gaattctg-aaattaactgttgggaaatcgagccaggtt-tgaatgacgatagggtctatagcttgcctttgggtatgggaggccaagaattggt--ggaggaaaaagtcatggaaaatgagaagatgaaggatttgaggggccagagtattggataacagagttgtctgttatccgtgtgtaccctgaaggcatctaggatgatgctgggacttgaaatgacagaaaagc--------agcttttga--------aaggattattggggaaattattggatgata i hg19.chr2 I 8 I 2 s panTro4.chr2B 235454219 303 + 247518478 tagaaggagaaaagctcaaggacaggtatcaaaaaag-gaattctg-aaattaactgttgggaaatcgagccaggtt-tgaatgacgatagggtctatagcttgcctttgggtatgggaggccaaggattggt--ggaggaaaaagtcatggaaaatgagaagatgaaggatttgaggggccagagtattagataacagagttgtctgttatccttgtgtaccctgaaggcatctaggatgatgctgggacttgaaatgacagaaaaac--------agcctttga--------aaggattattggggaaattattggatgata i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 119406387 303 + 131632457 tagaaggagaaaagctcaaggacaggtatcaaaaaag-gaattctg-aaattaactgttgggaaatcgagccaggtt-tgaatgacgatagggtctatagcttgcctttgggtatgggaggccaaggattggt--ggaggaaaaagtcatggaaaatgagaagatgaaggatttgaggggccagagtattagataacagagttgtctgttatccatgtgtaccctgaaggcatctaggatgatgctgggacttgaaatgacagaaaaac--------agcctttga--------aaggattattggggaaattattggatgata i gorGor3.chr2B I 8 C 0 s nomLeu2.GL397366 3610016 303 + 6458163 TAGAAGAAGAAAAGCTCAAGGATAGGTATCAAAAAAG-GAATTCTG-AAATTAACTGTTGGGAAATCAAGCCAGGTT-TGAATGATGATAGGGTCTATAGCTTGCCTTTGGGTATGGGAAGCCAAGAATTGGT--GGAGGAAAAAGTCATGGAAAATGAAAAGAGGAAGGATTTGAGGGGCCAGAGTATGGGATAACAGAGTTGTCTGTTATCCATGTGTACCCTGAAGGCATCTAGGATGATGCTGGGACTTGAAATGACAGAAAAAC--------AGCCTTTGA--------AAGGATTATTGGGGAAATTATTGGATGATA i nomLeu2.GL397366 I 8 C 0 s rheMac3.chr12 94006152 303 + 106825570 CAGAAGGAGAAAAGCTCAAGGATAGGTATCAAAAAAG-GAATTCTG-AAATTAACTGTTGGGAAATTGAGCCAGATG-TGAATGATGATAGGGTCTATAGGTTGCCTTTGGATATGGGAGGCCAAGAATTGGT--GGAGGAAAAAGTCATGGAAAATGAGAAGATGAAGGATTTGAGGGGCCAGAGTATTGGATAACAGAGTTGTCTGTTATCCATGTGTACCCTGAAGGCATCTAGGATGATGCTGTGACTTGAAATGACAGAAAAAC--------AGCCTTTGA--------AAGGATTATTGGGGAAATTATTGGATGATA i rheMac3.chr12 I 8 C 0 s calJac3.chr6 146676895 293 + 158406734 TAGAAGGAAAAAAGCTCAAGGATAGGTATCAAAAAAG-GAATTCTG-AAATTAACTGTTGGGAAACCGAGCCAGGTT-TGAAtgatgacagggtctatagactgccttttggtatggttggccaaaaattggt--agaggaaaaagtcatggaaaatgagaagatgaaggatttgagagaccagagtatttgataacagagttgcctgttatccatgtgtaccctgaaggcatctaggaagatgctgggatttgaaatgacagaaaaac--------agcctttga--------aaggattattggggaaatta---------- i calJac3.chr6 I 946 C 0 s equCab2.chr6 17809269 299 + 84719076 Cagaagaagcaagcttcaaggacaggtgtgaaaaaaatgaattgtt-aaattaattattggggagttgagccagggt-tgaatgaagaaagggcctgtggattgcatttgggcac-agaggccaagaatgggt--ggaggaaggagtcactggaaatga----------gatttgagaggtcagggtattggatgg-------gcctgttacccacgtatacctcgaaggtgtccaggaagatggcaggacttgaagtgacagaacaactctaagtgagccttcag-gtctgctggggcatggaggggaa--cgacagataata i equCab2.chr6 I 8 C 0 e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=1500.000000 s mm10.chr1_GL456221_random 25192 1 + 206961 G s rn5.chr9 92334853 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4091720 1 - 10418462 G i speTri2.JH393335 C 0 I 16 s hg19.chr2 231074146 1 + 243199373 g i hg19.chr2 I 2 I 10 s calJac3.chr6 146677188 1 + 158406734 g i calJac3.chr6 C 0 C 0 s equCab2.chr6 17809568 1 + 84719076 g i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94006455 0 + 106825570 C e nomLeu2.GL397366 3610319 0 + 6458163 C e gorGor3.chr2B 119406690 0 + 131632457 C e panTro4.chr2B 235454522 0 + 247518478 C e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=-7011.000000 s mm10.chr1_GL456221_random 25193 62 + 206961 TATCAGAAAGGTCACAGTGTTTTTATCATTATTATCATTATCATAATTATGACATTTATCA--------------------G s rn5.chr9 92334854 82 + 121549591 TATCAGATAGATCACAGTGTTTTTatcatcatcgccatcatcgtcatcatagtcatcatcaacatcaacatGATATTTtggg i rn5.chr9 C 0 C 0 s calJac3.chr6 146677189 20 + 158406734 tattgg------------------------------------------atgatattgatga--------------------g i calJac3.chr6 C 0 C 0 s equCab2.chr6 17809569 2 + 84719076 -------------------------------------------------tg------------------------------- i equCab2.chr6 C 0 C 0 e speTri2.JH393335 4091721 16 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94006455 0 + 106825570 C e nomLeu2.GL397366 3610319 0 + 6458163 C e gorGor3.chr2B 119406690 0 + 131632457 C e panTro4.chr2B 235454522 0 + 247518478 C e hg19.chr2 231074147 10 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=999.000000 s mm10.chr1_GL456221_random 25255 55 + 206961 TATGTGGAGGTtgggcatatgttccatggtacacatggagaggccaagaaacaac s rn5.chr9 92334936 55 + 121549591 tatgtggaggttgtacacatgttctttggttcacatgcagaggtcaagagtcatt i rn5.chr9 C 0 C 0 s equCab2.chr6 17809571 9 + 84719076 ----------------------------------atgaagagg------------ i equCab2.chr6 C 0 C 0 e speTri2.JH393335 4091721 16 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94006455 0 + 106825570 C e nomLeu2.GL397366 3610319 0 + 6458163 C e gorGor3.chr2B 119406690 0 + 131632457 C e panTro4.chr2B 235454522 0 + 247518478 C e hg19.chr2 231074147 10 + 243199373 I e calJac3.chr6 146677209 0 + 158406734 C e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=537.000000 s mm10.chr1_GL456221_random 25310 62 + 206961 ttgt--gagttgggtctgttcttccaccatatgggtttcagggatcaaattcaggtcaccaggc s rn5.chr9 92334991 64 + 121549591 ttgtaggagtcgtttctgttcttctgccatatggatttcagggatcaaattcagatcaccaggc i rn5.chr9 C 0 C 0 s gorGor3.chr2B 119406690 8 + 131632457 ------------------------------------ttgagggt-------------------- i gorGor3.chr2B C 0 C 0 e speTri2.JH393335 4091721 16 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94006455 0 + 106825570 C e equCab2.chr6 17809580 0 + 84719076 C e nomLeu2.GL397366 3610319 0 + 6458163 C e panTro4.chr2B 235454522 0 + 247518478 C e hg19.chr2 231074147 10 + 243199373 I e calJac3.chr6 146677209 0 + 158406734 C e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=2013.000000 s mm10.chr1_GL456221_random 25372 17 + 206961 ttggtggcaaggacctc s rn5.chr9 92335055 17 + 121549591 ttggtggcagggacctc i rn5.chr9 C 0 C 0 s panTro4.chr2B 235454522 8 + 247518478 ttgatgat--------- i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3610319 8 + 6458163 TTGATGAT--------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006455 8 + 106825570 TTGATGAT--------- i rheMac3.chr12 C 0 C 0 e speTri2.JH393335 4091721 16 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17809580 0 + 84719076 C e gorGor3.chr2B 119406698 0 + 131632457 C e hg19.chr2 231074147 10 + 243199373 I e calJac3.chr6 146677209 0 + 158406734 C e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=4299.000000 s mm10.chr1_GL456221_random 25389 25 + 206961 gagctagtgagccatttgccagacc s rn5.chr9 92335072 18 + 121549591 tagccagcgagcca-------GGAC i rn5.chr9 C 0 C 0 s panTro4.chr2B 235454530 10 + 247518478 gagtgagtga--------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119406698 10 + 131632457 gagtgagtga--------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610327 10 + 6458163 GAGTGAGTGA--------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006463 10 + 106825570 GAGTGAGCAA--------------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146677209 10 + 158406734 gagtgagtga--------------- i calJac3.chr6 C 0 C 0 s equCab2.chr6 17809580 9 + 84719076 gagtgagtg---------------- i equCab2.chr6 C 0 C 0 e speTri2.JH393335 4091721 16 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e hg19.chr2 231074147 10 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=-2403.000000 s mm10.chr1_GL456221_random 25414 8 + 206961 AATG-ACAC s rn5.chr9 92335090 8 + 121549591 AATA-ACAG i rn5.chr9 C 0 C 0 s hg19.chr2 231074157 7 + 243199373 agtgaac-- i hg19.chr2 I 10 C 0 s panTro4.chr2B 235454540 2 + 247518478 -----ac-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119406708 2 + 131632457 -----ac-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610337 2 + 6458163 -----AC-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006473 2 + 106825570 -----AC-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146677219 2 + 158406734 -----ac-- i calJac3.chr6 C 0 C 0 e speTri2.JH393335 4091721 16 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17809589 0 + 84719076 C e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=785102.000000 s mm10.chr1_GL456221_random 25422 401 + 206961 ATTTTAATTGACTGGTGACATCTCAGAGTAGAAGATGGGAGAGCGCCAAAGGCGAGGTGGGA---ATAGGTAGTCA--GGTGGACATCCAACCTGCTTGCCACCATGAGGTTTAAGTGACAGATAATGGATGTTGCCTGCCTATGATTTACCAGGAAGCATTTTCCT-TCTGGG------------------GGAGGCTAGTGTACCAGTCACACCAAGCAGTTGTGGAT-------------GGG-AGTTC------AGTGAATTTGAGCAATGCTTGGTTCAATATGTCTAAGTGCCTTCTTGTTACCT-ATAATTTTT-GCAAAGCCTTTGAGGAAGGCAGAGT----GAGAAGAAAATGAGGAGACG--CCATGT----------GATTGCAGACACACAATGGATGCTCGATTCATGGATGCTAGGATGTGCTACAGCTAGAAGAACAGGAAGCG------------------TCA s rn5.chr9 92335098 368 + 121549591 GTTTTAATTGAACGATGACACCTCAGAGTAGACGATGGGAGA-------AGGCGAGATGGGA---GTAGGCAGCCA--GGTGGACATCCAACCTGCTTGCTACTGTGAGGTTTAAGTGAC--------GATGACACCTGCATATGACTTACCAGGAAGCGGTGTCCT-CCGGGGCG---------------GGGAGGAGAGTGTACCAGTCACACTAAGCAATTGTGGAT-------------AGG-AGTTC------AGTGAATTTGAGCAATGCTTGGGTCAATATGTCTAAGTGCCTTCTTGTCGCCT-ATACTTTTC-ACAAGGCCTTTGAGGAAGGCAGAGT----GAGAAGAAAACGAGGAAATG--CTGTGT----------CATTGCAGAAACAG------------------GGATGCTGGGATGCGCCGCAGCTAGAA---CAGGGAGCA------------------TGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4091737 386 - 10418462 GTTTTAATTGAATGGCTGAGCCTCAAAGGAGAGGATGGGGAG---CAAGAGACTGGATAGGGTC-GAGGGTGGCGA--GGTGTGGA-------------CCAC----AGGTGTGGGTGACGGATGGCAGAGAATGGCTGGCTGT------TCAGG-AGAAGCAACCT-TCAGCTCA----------------AGAAATTGGTGTGACTAACATGCTAAGAAACTGTGGATACAGGCCT--CGGAGG-GCTTCGGAACAGGCGATTCTGACAGTTGCTTATTTCCACGTGTCTAAATGCCTTCTGGTTTGTC-ACAGTTTCTAGAAAGGCCTTTGAGGAAGGTGGAGTCTCGGCCATCAGGACCAGG------------------------------GACACATAGTGGTTGCTTT---------TGACAAGATGTG-----ATCAGAACCACAGAGAGCAACTCCAAATTCACTCTCTTGA i speTri2.JH393335 I 16 C 0 s hg19.chr2 231074164 454 + 243199373 attttaattgaatggttaagactcaaaggagaggatcaggga--ggaaggggctggatggggccagtaggcagcaaaggacagacatctaacctgtctctcaccatgaggtgtgagtgatggatggcagagaatgcctagccatgtcttaagaggaagtgggttcctctctggggaaccaactttcagttaaagagggaagtgcaattaacactctaagaagttgtgaatataggaga--ttgatt-ttttcagaacaggcaattccaa---tggcataTTTCAATACCCCCAAATGCCTTCTGGTTTCCTGATAATTTTCATAAAGGCCTTTTTGGAAGATGCAGC----AAATGGAAACTGCAGAAACGAACTGTGTGTGGCATCAGGACTGTGGTCACATAGTGG-TGCTCT---------TGACAAGATACA-----GTCAGAAAAACAGAAAGCAACTCTGAATTCACCCTTCTGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235454542 454 + 247518478 attttaattgaatggttaagactcaaaggagaggatcaggga--ggaaggggctggatggggtcagtaggcagcaaaggacggacatctaacctgtctctcaccatgaggtgtgagtgatggatggcagagaatgcctagccatgtcttaagaggaagtgggttcctctctggggaaccaactttcagttaaagagggaagtgcaattaacactctaagaagttgtgaatatagcaga--ttgatt-ttttcagaacaggcaattccaa---tggcataTTTCAATACCCCCAAATGCCTTCTGGTTTCCTGATAATTTTCATAAAGGCCTTTTTGGAAGATGCAGT----GAATGGAAACTGCAGAAACGAACTGTGTGTGGCATCAGGACTGTGGTCACATAGTGG-TGCTCT---------TGCCAAGATACA-----GTCAGAAAAACAGAAAGCAACTCTGAATTCACCCTTCTGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119406710 445 + 131632457 attttaattgaatggttaagactcaaaggagaggatcaggga--ggaaggggctggatggggtcagtaggcagcaaaggacggacatctaacctgtctctcaccatgaggtgtgagtgatggatggcagagaatgcctagccat---------tgaagtgggttcctctctggggaaccaactttcagttaaagagggaagtgcaattaacaccctaagaagttgtgaatataggaga--ctgatt-ttttcagaacaggcaattccaa---tggcataTTTCAATACCCCCAAATGCCTTCTGGTTTCCTGATAATTTTCATAAAGGCCTTTTTGGAAGATGCAGT----GAATGGAAACTGCAGAAACGAACTGTGTGTGGCATCAGGACTGTGGTCACATAGTGG-TGCTCT---------TGACAAGATACA-----GTCAGAAAAACAGAAAGCAACTCTGAATTCACCCTTCTGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610339 418 + 6458163 ATTTTAATTGAATGGTTAAGCCTCAAAGGAGAGGATCGAGGA--GGAAGGGGCTGGATGGGGTCAGTAGGCAGCAAAGGGTGGACATCTAAGGGGCCTCTCACCAT---------------GACGGCAGAGAATGCCTAGCCATGTCTTAAGAGGAAGTGGGTTCCTCTCTGGGGAACCAACTTTCAGTTAAAGAGGGAAGTGCAATTAACACTCTAAGAAGTTGTGAATATAGGAGA--TTGATT-TTTTCAGAACAGGCAAT------------------------CCCCAAATGCCTTCTGGTTTCCTGATAATTTTCATAAAGGCCTTTTTGGAAGATGCAGT----GAACGGAAACTGCAGAAACAAACTGTGTGTGGCATCAGGACCGTGGTCACATAGTAG-TGCTCT---------TGACAAGATACA-----GTCAGAAAAACAGAAAGCAACTCTGAATTCACCCTTCTGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006475 447 + 106825570 ATTTTAATTGAATGGTTAAGCCTCAAAGGAGAGGATCAGGGA--GGCAGGGGCTGGATGGGGTCAGTAGGCAGCAAAGGATGGACATCTAACTTGCCTCTCACCATGAGGTGTGAGTGATGGATGGCAGAGAATGCCCAGCCATGTCTTAAGAGGAAGTGGGTTCCTCTCTGGGGAACCAACTTTCAGTTAAAGACGGAAGTGCAATTAACAC----AGAAGTTGTGAATATAGGAGA--TTGATTATTTTCAGAAAAGGCAATTCCAA---TGGCATATTTCAATATCCCCAAATGCCTTCTGGTTTCCTGATAATTTTCATAAAGACCTTTCTGGAAGATGCAGT----GAATGGAAATAGCAGAAACAAACTGCGTGTGGCATCAGGACTGTGGTCACATAGTGG-TGCTCT---------TGACAAGACA---------CAGAAAAACAGAAAGCAACTCAGAATTCACCCTTCTGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146677221 452 + 158406734 attttaactgaatggttaagcctcaaaggagaggatgcggga--ggaaggggctagatggggtctggaggcagcaaaggatggacatctaacctgcctcccaccatgaggtgtgagtgatggatgacagagaatgtccctccatgtcttaagaggaagtcgggtcctctctggggaaccaacttccagttaaagaggaaggtgcaattaacactctaagaagttgtggatatag-aga--ctaatttttttcaggacaggcaattccaa---tggcataTTTCAATATCCAC-GATGCCTTCTGGTTGTCCGATAATTTTCATAAAGGCCTTTATGGAAGATGCAGT----GAAAGAAAACTGCAGAAACAAACTGTGCTTGGCATCAGGACTGTGGTCACATAGCGG-TGCTCT---------TGACAAGATACA-----GTCAGATAAACAGAAAGCAACTCT-AATTCACCCTTCCGA i calJac3.chr6 C 0 C 0 s equCab2.chr6 17809589 451 + 84719076 -tttcacttgaatggttaagcctcaaaggagaggatcaggga--gcaagcggctggctgggggcagtgggtaacaaggggtggacatccaacctaccttctaccatgag------gagactgatagcagagaatatgcagccttgtcttaagaggaagcagagtcctctctggg-aaacaactttcagttaaagagggaggagcaactaaccctccaagaagttgtggctataggagactttgatg-atttctgaacaggcagttccaatgagtgcataTTTCAATGGTCCTAAATGCCTTCCCACTTCCCTATAATTTTCATGAAGGCCTTAGAGGAAGATGCAAT----GAATCGGCATTGCAGAAACAAACTGTACG-GGCGTCTTGACAATAATCACATAATGGGTACATA---------TGACAAGATATA-----ATCGGAAGAACAGAATGCAGCTCCAAATTCACCCTCCAGA i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=626181.000000 s mm10.chr1_GL456221_random 25823 240 + 206961 CAT------GGGAAAGGATGTCTGTACCTTTCTTGTTTGCAGGTGTGCAGGGTACTTCCTGGGCCATTGCAAGGGCATTTGCTGCTGGAGAGTCATCTTTTACCACTAGCAAAAGAAACGGAATTCACATCAGAGGTGAGCATGGACCGAAGAGAAAATACAGAGGAAAGTCAGCTGGAGAAATTGGATAGCAGGGAGAGAAGG-----------CAGGGGTCTGCCAGCCCGTAGGGTTCCACCTAAATCTGACCC------- s rn5.chr9 92335466 239 + 121549591 CAC------AGGAAAGGATGGCTGTACCTTTCTTGTTTGCAGGTGTGCAGGGAGCTTCCTGGGGCACTTCCGGGTCATTTGGTGCTGGAGAATTATCTTGAACCACTGGCAAAAGAAACAGAATTCACACCAGAAGTCAGAATGGACTGAAGAGAAAGTGCAGAGGAAAGCCAGTTGGAGAACTCGAAGAGCAGGGAGGGAAG------------CAGGGATCTGCCAGCCCATAGGGCTCCACCTTGACCTGACCC------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4092123 241 - 10418462 CATCTA-AAGAGGAAGGAAATCCTTACCTTTCTTCTTTGGAGGTGTGCTAGGTGCCTCGTGGGGCTCCTCTGGGTCATTTGACTCTGGAGAATTCTCTGTCACCACTGACAAAAGACACAAAATTCCTCTCAGAGCTCAGAAGAGGCGGAAGAGAAAGTGCCCAGGGGAGTCGAAGGGAGA-----GAGGGCATGCCCTGCAGGC---------CTCGGAACCTG-CAGGCCGGAGGGTTCTTCCTTGACTGTGCCA------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231074618 248 + 243199373 CCTCTACAGAAGAAAGGCTTTTCTTACCTTTCTTGTCTGAAGGTGTGCTGGACACCTCCTGGGGCTCTTCTGGGTCATTTGGTTCTGGAGAATTATCTCTTATCTCTGACAAAAGAAATATAAGTCATTTCAGAGCTCAG-ATCCAGTGAAGAGAAAGTGCTGAGGGAAGTCAATGCAAGAACTAGAAAAGTAGAAAGTACATGCAGCCCAGGGCCGGGAATCTGCTTGCCCTAAGAATTC--------CCTGGCTC------- i hg19.chr2 C 0 I 24 s panTro4.chr2B 235454996 248 + 247518478 CCTCTACAGAAGAAAGGCTTTTCTTACCTTTCTTGTCTGAAGGTGTGCTGGACACCTCCTGGAGCTCTTCTGGGTCATTTGGTTCTGGAGAATTATCTCTTATCTCTGACAAAAGAAATATAAGTCATTTCAGAGCTCAG-ATCCAGTGAAGAGAAAGTGCTGAGGGAAGTCAATGCAAGAACTAGAAAAGTAGAAAGTACATGCAGCCCAGGGCTGGGAATCTGCTTGCCCTAAGAATTC--------CCTGGCTC------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119407155 248 + 131632457 CCTTTACAGAAGAAAGGCTTTTCTTACCTTTCTTGTCTGAAGGTGTGCTGGACACCTCCTGGTGCTCTTCTGGGTCATTTGGTTCTGGAGAATTATCTCTTATCTCTGACAAAAGAAATATAAGTCATTTCAGAGCTCAG-ATCCAGTGAAGAGAAAGTACTGAGGGAAGTCAATGCAAGAACTAGAAAAGTAGAAAGTACATGCAGCCCAGGGCTGGGAATCTGCTTGCCCTAAGAATTC--------CCTGGCTC------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3610757 248 + 6458163 CCTCTACAGAAGAAAGGCTTTTCTTACCTTTCTTGTTTGGAGGTGTGCTGGACACCTCCTGGGGCTCTTCTGCATCATTTGGTTCTGGAGAATTATCTCTTATCTCTGACAAAAGAAATATAAGTTATTTCAGAGCTCAG-ATCCAGTGAAGAGAAAGTGCTGAGGGAAGTCAATGGAAGAACTAGAAAAGTAGAAAGTACATGCAGCTCAGGGCTGGGAATCTGCTCGCCCTAAGAATTC--------CCTGGCTC------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94006922 248 + 106825570 CCTCTACAGGAGAAATGCTTTCCTTACCTTTCTTGTTTGAAGGTGTGCTGGACACCTCCTGGGGCTTTTCTGGGTCATTTGGTTCTGGAGAATCATCTCTTATCTCTGACAAAAGAAATATAAGTCACTTCAGAGCTCAG-ATCCAGTGAAGAGAAAGTGCTGAGGGAAGTCAATGGAAGAACTAGAAAAGTAGAAAGTACATGCAGCCCAGGGCTGGGAAGCTGATAGCCCTAAGAATTC--------CCTGGCTG------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146677673 247 + 158406734 TATCTACAGGAGAAAGGCATTCCTTACCTTTCTTCTTTGAAGGTGTGCTGGATACCTCCTGGGGCTCTTCTGAGTCATTTGGTTCTAGAGAATCATCTCTTATCTCTGAC-AAAGAAATATAAGTCACTTCAGAGCTCAA-ATTAGGTGAAGAGAAAGTGCTGAGGGAAATCAATGGAAGAACTAGAAAGGTAGAAAGTGCATGCAGCCCGGGCCTGGGGATCTGCTAGCCCTAGGGGTTC--------CCCGGGTT------- i calJac3.chr6 C 0 I 18 s equCab2.chr6 17810040 248 + 84719076 CATCTCCAGGACAAAGGCAATCATTACCTTTCTTTGTGGGAGGTGTGCTGGATGCCTCCTGGGGCTCTTCTGCATCATTTGGTTCAGGAGAATCATCTCGTATCACTGACAGAAGAAATAGAATTCATTTCAGAGCTCAGAAAGGGCTGAAGAGAAAGTGCCAAGGGAGATCAATGGGAGACCCAGGAGGGTGATGAGTGTGTGTAGA-CAGGGCTGGGAACCTGCCAGCTTGCAGGGTTG--------CCTTGATT------- i equCab2.chr6 C 0 I 6 s echTel1.scaffold_187355 1743 228 - 8640 ------CAGGAGAAAGGCAACCCTCACGTTTCTTGTTTGCAGGAGGGCCAGATAGGTTCAGGGGCTCGTTGGGGCCTTTTGGTTCAGGAGCATCTCCTCTCACCACTGACCAAAGAGAGAGAATTTATTTCCAAGGTCAG----AACTGATGGGAAAGTGTTGGGGGTAATC-------------GCAGAGAAGCCGACGGATG-----CAGGGCTGGGAATCTGTCAGGCAACAAAGCTC--------CCTGGAATCTATCCA i echTel1.scaffold_187355 N 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=2412.000000 s mm10.chr1_GL456221_random 26063 3 + 206961 CCt s rn5.chr9 92335705 3 + 121549591 CCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4092364 3 - 10418462 ACT i speTri2.JH393335 C 0 C 0 s calJac3.chr6 146677938 3 + 158406734 ACT i calJac3.chr6 I 18 C 0 s equCab2.chr6 17810294 3 + 84719076 ACT i equCab2.chr6 I 6 C 0 s echTel1.scaffold_187355 1971 3 - 8640 CCT i echTel1.scaffold_187355 C 0 I 1059 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007170 0 + 106825570 C e nomLeu2.GL397366 3611005 0 + 6458163 C e gorGor3.chr2B 119407403 0 + 131632457 C e panTro4.chr2B 235455244 0 + 247518478 C e hg19.chr2 231074866 24 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=12418.000000 s mm10.chr1_GL456221_random 26066 14 + 206961 tgttatcattttta s rn5.chr9 92335708 14 + 121549591 TAGTTTAAGtttta i rn5.chr9 C 0 C 0 s speTri2.JH393335 4092367 14 - 10418462 CGGACCCACTTACA i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235455244 14 + 247518478 TGTCTTGATTTTTA i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119407403 14 + 131632457 TGTCTTGATTTTTA i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 3611005 14 + 6458163 TGTCTTGATTTTTA i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94007170 14 + 106825570 TGTCTTGATTTTTA i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146677941 14 + 158406734 TGTGGTTATTGTTA i calJac3.chr6 C 0 I 4405 s equCab2.chr6 17810297 13 + 84719076 TGT-GTCATCGTGA i equCab2.chr6 C 0 I 333 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e hg19.chr2 231074866 24 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=-3712.000000 s mm10.chr1_GL456221_random 26080 2 + 206961 aa- s rn5.chr9 92335722 2 + 121549591 aa- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4092381 2 - 10418462 GA- i speTri2.JH393335 C 0 I 252 s panTro4.chr2B 235455261 2 + 247518478 -AC i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119407420 2 + 131632457 -AC i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3611022 2 + 6458163 -AC i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94007187 2 + 106825570 -GC i rheMac3.chr12 I 3 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17810310 333 + 84719076 I e hg19.chr2 231074866 24 + 243199373 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=28461.000000 s mm10.chr1_GL456221_random 26082 37 + 206961 gtgt-----------gtgttatgcctgcatgtgtgtctg----------------------tgcaccaca s rn5.chr9 92335724 48 + 121549591 gttttatgtctatgggtgttatgcctgcatgtgtgtctg----------------------tgtaccacg i rn5.chr9 C 0 C 0 s panTro4.chr2B 235455263 58 + 247518478 ------------TTGTGGTTATTGTTACCTGTGCGACCATCACAGGGAACTAGGGCACAACTGCCCCACA i panTro4.chr2B C 0 I 391 s gorGor3.chr2B 119407422 58 + 131632457 ------------TTGTGGTTATTGTTACCTGTGCGACCATCACAGGGAACTAGGGCACAACTGCCCCACA i gorGor3.chr2B C 0 I 391 s nomLeu2.GL397366 3611024 58 + 6458163 ------------TTGTGGTTATTGTTACCTGTGCGACCATCACAGGGAACTAGGGCACAACTGCCCCACA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94007189 58 + 106825570 ------------TTGTGGTTATTATTACCTACGTGACCATCACAGGGAACTCGGGCACAACTGCCCCACA i rheMac3.chr12 C 0 I 1 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092383 252 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17810310 333 + 84719076 I e hg19.chr2 231074866 24 + 243199373 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=7259.000000 s mm10.chr1_GL456221_random 26119 37 + 206961 tgtatgcttgg-------ctcctgcaaaggcta-------------------------gaagagggtat s rn5.chr9 92335772 37 + 121549591 tgtatgcctgg-------ctcctgcaaaggcca-------------------------gaagagggtgt i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3611083 69 + 6458163 CAGAGGCTCAGTCTGATCCTTTTAGAGAGATTATTTTATGGATGGAAGAGAAGTGAGTGAAGAAGGTGC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94007248 69 + 106825570 CAGAGGCTCAGTCTGATCCTTTTAGAGAGATTATCTTATGGATGGAAGAGAAGTGAGTGAAGAGGGTAC i rheMac3.chr12 I 1 I 312 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092383 252 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17810310 333 + 84719076 I e gorGor3.chr2B 119407480 391 + 131632457 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=1783.000000 s mm10.chr1_GL456221_random 26156 95 + 206961 -----------------cagataccttgtgattagagttacag----------atggttgtg------agctaccat-------------------------ataggtggtaggaattgaactcagat----------------------------------------------------------cctatggaagaacagtc----actgctct s rn5.chr9 92335809 95 + 121549591 -----------------cagataccttgggcttggagttacag----------atggttgtg------agcgactat-------------------------aaaggtggtaggagttgaattcagat----------------------------------------------------------cctctggaagagcagtc----agtgctct i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3611152 214 + 6458163 AATGAATGGAAATTGCAGAAATAAACTGTGCTGGGTATCATAGCTGTGGTCACATAGTTGCTGCTCCCAGCAGCCCTTGCTCAAGGAAGGAAGCTGAGAGTGGAAAGTGGT-GACATTGAAATCTGATGTCCACGATGAAGGGGAATGTCTTTGCTGTATGAAAAATACATCTTATTGCTTTGATGTCTGTGTATGGATATTCTTTAACTGCTCT i nomLeu2.GL397366 C 0 I 74 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092383 252 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007317 312 + 106825570 I e equCab2.chr6 17810310 333 + 84719076 I e gorGor3.chr2B 119407480 391 + 131632457 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=1644.000000 s mm10.chr1_GL456221_random 26251 21 + 206961 taggcactgagccacctctcc s rn5.chr9 92335904 21 + 121549591 taggcactggaccacctctct i rn5.chr9 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092383 252 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007317 312 + 106825570 I e equCab2.chr6 17810310 333 + 84719076 I e nomLeu2.GL397366 3611366 74 + 6458163 I e gorGor3.chr2B 119407480 391 + 131632457 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=188.000000 s mm10.chr1_GL456221_random 26272 7 + 206961 agcccTG s rn5.chr9 92335925 7 + 121549591 agcccTC i rn5.chr9 C 0 C 0 s equCab2.chr6 17810643 7 + 84719076 AGCAGGA i equCab2.chr6 I 333 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092383 252 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007317 312 + 106825570 I e nomLeu2.GL397366 3611366 74 + 6458163 I e gorGor3.chr2B 119407480 391 + 131632457 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=1325.000000 s mm10.chr1_GL456221_random 26279 8 + 206961 ACCATCTT s rn5.chr9 92335932 8 + 121549591 ACCGCTTT i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3611440 8 + 6458163 GCTAGCCT i nomLeu2.GL397366 I 74 C 0 s equCab2.chr6 17810650 8 + 84719076 GCTAGCCT i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092383 252 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007317 312 + 106825570 I e gorGor3.chr2B 119407480 391 + 131632457 I e panTro4.chr2B 235455321 391 + 247518478 I e hg19.chr2 231074866 24 + 243199373 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=1910.000000 s mm10.chr1_GL456221_random 26287 2 + 206961 GT s rn5.chr9 92335940 2 + 121549591 GT i rn5.chr9 C 0 C 0 s hg19.chr2 231074890 2 + 243199373 GT i hg19.chr2 I 24 C 0 s nomLeu2.GL397366 3611448 2 + 6458163 GT i nomLeu2.GL397366 C 0 C 0 s equCab2.chr6 17810658 2 + 84719076 GT i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092383 252 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007317 312 + 106825570 I e gorGor3.chr2B 119407480 391 + 131632457 I e panTro4.chr2B 235455321 391 + 247518478 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=-1748.000000 s mm10.chr1_GL456221_random 26289 3 + 206961 --TAT s rn5.chr9 92335942 3 + 121549591 --TAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4092635 3 - 10418462 --TAC i speTri2.JH393335 I 252 C 0 s hg19.chr2 231074892 3 + 243199373 --TAT i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3611450 3 + 6458163 --GCT i nomLeu2.GL397366 C 0 C 0 s equCab2.chr6 17810660 3 + 84719076 AGT-- i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007317 312 + 106825570 I e gorGor3.chr2B 119407480 391 + 131632457 I e panTro4.chr2B 235455321 391 + 247518478 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=516.000000 s mm10.chr1_GL456221_random 26292 10 + 206961 TGTTACCTAT s rn5.chr9 92335945 10 + 121549591 TGTTACCTAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4092638 5 - 10418462 TGCTA----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231074895 10 + 243199373 TGTTACCTGT i hg19.chr2 C 0 I 429 s nomLeu2.GL397366 3611453 5 + 6458163 TGCTC----- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007629 9 + 106825570 TGCTTCCTA- i rheMac3.chr12 I 312 C 0 s equCab2.chr6 17810663 5 + 84719076 TGCTA----- i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e gorGor3.chr2B 119407480 391 + 131632457 I e panTro4.chr2B 235455321 391 + 247518478 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=388890.000000 s mm10.chr1_GL456221_random 26302 219 + 206961 GCACCTGCTAACAGCAGATACATCACGGAATTTGGCTTGC-TTTGATGCAATAAGAAAAACAG---GGGCTTGAAATCATAACAGATACAAAGGTCCATCTC-CTTAAAA------CTGTCTGT-TTT------------------GAAAGTTGTCTTAAATTCTGGCTTCTTTAGGGTTAGGTAACTGAGGTACATTGTAAACTGTCTACAGACTTTTGAAGTCAttcctttctttttatatcatttt s rn5.chr9 92335955 235 + 121549591 GCATCTGCTAACAGCAAATTCATTATGAAATTTGGCTTGC-TTTGATGCAATAAGAAAAACAGAGGGGGCTTGATACCACAATAGGTAAAAAGGTCCATCTC-CTTAAGG------CTGTCTGT-TGT----TTATGCAATATTATGAAAATTGTCTTAAATTCTGACTTCTTTAGGGTCAGGTAACTGGGTCACATTGTAAACTGTCTACGG-CTTTTGTGGTCATTTCTTTCTTTTCCTATCATTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4092643 218 - 10418462 GCACCTACTCACAGCAAATATG-AACCGCGTTCTGCTGGT-TTTGCTGA-----------------GGACTTGAAAT-AGAATAAAT--AAAGGTCCATCCCACGTAGGGACGCCACTTTCTTC-TTT---GCTACACAATCCTAGGAGATCTGTCTCCAATTCTGCCTAC-ATAGCAGCCGGTGACTGTG-TGGATAAGCAACTGTTGAA---CTTTTGAGACAATTTACTACTTTTCACATTGCTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231075334 237 + 243199373 GCACCTGTTAACAGCAAAGACA-TATAAAGCTCTGCTAGTTTTTGCTGCACAAAGAAAGACAGA--GAACTTGAAGCCATAACAAAT--AAAGGCTCATCTCACATGAAG------CTGTCACC-TTTTTCTTTACACACTGCATTGAGATTGGTCTCAAATGCTGGCCTGCTTAGGAATAGGTGACTGAGGCAGGTGGCAAGCAGTCATTAGATCTTTGGAATAATTTATTACCTTTCAAGTTATATT i hg19.chr2 I 429 C 0 s panTro4.chr2B 235455712 234 + 247518478 GCACCTGTTAACAGCAAAGATA-TATAAAGCTCTGCTAGTTTTTGCTGCACAAAGAAAGACAGA--GAACTTGAAGCCATAACAAAT--AAAGGCTCATCTCACATGAAG------CTGTCACC-TTTTTCTTTATACACTGCATTGAGATTGGTCTCAAATGCTGGCCTGCTTAGGAATAGGTGACTGAGGCAGGTGGCAAGCAGTCATTAGACCTTTGGAATAATTTATTACCTTTCAAATTAT--- i panTro4.chr2B I 391 C 0 s gorGor3.chr2B 119407871 234 + 131632457 GCACCTGTTAACAGCAAAGACA-TATAAAGCTCTGCTAGTTTTTGCTGCACAAAGAAAGACAGA--GAACTTGAAGCCATAACAAAT--AAAGGCTCATCTCACATGAAG------CTGTCACC-TTTTTCTTTACACACTGCATTGAGATTGGTCTCAAATGCTGGCCTGCTTAGGAATAGGTGACTGAGGCAGGTGGCAAGCAGTCATTAGACCTTTGGAATAATTTATTACCTTTCAAATTAT--- i gorGor3.chr2B I 391 C 0 s nomLeu2.GL397366 3611458 236 + 6458163 GCACCTGTTAACAGCAAAGATA-TATAAAGCTCTGCTAGTTTTTGCTGCACAAAGAAAGAC--A--GAACTTGAAGCCATAACAAAT--AAAGGCTCATCTCACATGAAG------CTGTCACCTTTTTTCTTTACACACTGCTATCAGATTGGTCTCAAATGCTGGCCTGCTTAGGAATAGGTGACTGAGGCAGGTGGCAAGCAGTCATTAGACCTTTGGAATAATTTATTACCTTTCAAATTGTATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007638 237 + 106825570 GCACCTGTTAACAGCAAAGATA-TATAAAGCTCTGCTAGCTTTTGCTGCACAAAGAAAGACAGA--GGATTTGAAGCCATTACAAAT--AAAGGCCCATCTCACATAAAG------CTGTCACC-TTTTTCTTTACACACTGCTATGAGATTGGTCTCAAATGCTGGCCTGCGTAGGAATAGGTGACTGAGGCAGGTAGCAAACGGTCATTAGACCTTTGGAATAATTTATTACCTTTCAAATTATATT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17810668 237 + 84719076 GCAAGTGTTAACAGCAAAGGTA-GACAAAGTTCGGCTAGTTTTTGCTGCACTAAGAAAGTCAGAA-GGACTTGAAGCCATAACAAAT--AAAGGC-CATCTCACAAAAGG------CTGTCACC-TTCTTGTTTACACAATGCTGTGAGATCTGTTTCAAATTCTGGCCTGCTTAGGAACAGGTCCCTGAGACAGGTAGCAAGCAGTCATTACACCTTTTAAATCATTTGTCGCATTTCAAATTATTTA i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=2089.000000 s mm10.chr1_GL456221_random 26521 11 + 206961 attatttttta s speTri2.JH393335 4092861 11 - 10418462 AGTAATATCTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231075571 4 + 243199373 CATA------- i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3611694 11 + 6458163 AGTAATATCAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007875 11 + 106825570 AGTAATATCAA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17810905 11 + 84719076 AATAATATCTA i equCab2.chr6 C 0 I 276 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e gorGor3.chr2B 119408105 0 + 131632457 C e panTro4.chr2B 235455946 0 + 247518478 C e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I e rn5.chr9 92336190 0 + 121549591 C a score=753.000000 s mm10.chr1_GL456221_random 26532 2 + 206961 tt s speTri2.JH393335 4092872 2 - 10418462 CT i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3611705 2 + 6458163 CT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007886 2 + 106825570 CT i rheMac3.chr12 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17810916 276 + 84719076 I e gorGor3.chr2B 119408105 0 + 131632457 C e panTro4.chr2B 235455946 0 + 247518478 C e hg19.chr2 231075575 0 + 243199373 C e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I e rn5.chr9 92336190 0 + 121549591 C a score=29.000000 s mm10.chr1_GL456221_random 26534 1 + 206961 t s speTri2.JH393335 4092874 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3611707 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007888 0 + 106825570 C e equCab2.chr6 17810916 276 + 84719076 I e gorGor3.chr2B 119408105 0 + 131632457 C e panTro4.chr2B 235455946 0 + 247518478 C e hg19.chr2 231075575 0 + 243199373 C e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I e rn5.chr9 92336190 0 + 121549591 C a score=364.000000 s mm10.chr1_GL456221_random 26535 4 + 206961 ttta s nomLeu2.GL397366 3611708 4 + 6458163 TTTA i nomLeu2.GL397366 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092875 0 - 10418462 C e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007888 0 + 106825570 C e equCab2.chr6 17810916 276 + 84719076 I e gorGor3.chr2B 119408105 0 + 131632457 C e panTro4.chr2B 235455946 0 + 247518478 C e hg19.chr2 231075575 0 + 243199373 C e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I e rn5.chr9 92336190 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456221_random 26539 6 + 206961 ttttta e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092875 0 - 10418462 C e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007888 0 + 106825570 C e equCab2.chr6 17810916 276 + 84719076 I e nomLeu2.GL397366 3611712 0 + 6458163 C e gorGor3.chr2B 119408105 0 + 131632457 C e panTro4.chr2B 235455946 0 + 247518478 C e hg19.chr2 231075575 0 + 243199373 C e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I e rn5.chr9 92336190 0 + 121549591 C a score=-3411.000000 s mm10.chr1_GL456221_random 26545 96 + 206961 ttttttttAATTTAAAAAAAATttttggtttttcaagacagggtttctctgtgtagccctggctgtcctggaactcattttgtagaccaggctggc s panTro4.chr2B 235455946 16 + 247518478 ------------------------------------------------------------------------ATTCATAATATCAAC--------T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408105 16 + 131632457 ------------------------------------------------------------------------ATTCATAATATCAAC--------T i gorGor3.chr2B C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092875 0 - 10418462 C e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007888 0 + 106825570 C e equCab2.chr6 17810916 276 + 84719076 I e nomLeu2.GL397366 3611712 0 + 6458163 C e hg19.chr2 231075575 0 + 243199373 C e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I e rn5.chr9 92336190 0 + 121549591 C a score=1506.000000 s mm10.chr1_GL456221_random 26641 4 + 206961 ctcg s panTro4.chr2B 235455962 4 + 247518478 CTTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408121 4 + 131632457 CTTA i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94007888 4 + 106825570 CTTA i rheMac3.chr12 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092875 0 - 10418462 C e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17810916 276 + 84719076 I e nomLeu2.GL397366 3611712 0 + 6458163 C e hg19.chr2 231075575 0 + 243199373 C e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I e rn5.chr9 92336190 0 + 121549591 C a score=2820.000000 s mm10.chr1_GL456221_random 26645 3 + 206961 aac s panTro4.chr2B 235455966 3 + 247518478 AAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408125 3 + 131632457 AAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3611712 3 + 6458163 AAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007892 3 + 106825570 AAC i rheMac3.chr12 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092875 0 - 10418462 C e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17810916 276 + 84719076 I e hg19.chr2 231075575 0 + 243199373 C e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I e rn5.chr9 92336190 0 + 121549591 C a score=-9913.000000 s mm10.chr1_GL456221_random 26648 79 + 206961 tcagaaatccccctgcttctgactcccgagtgctgggattaaaggtgcgtgccaccacgcctggctTTCATATCACTTT s speTri2.JH393335 4092875 10 - 10418462 TCAAAAATCC--------------------------------------------------------------------- i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235455969 5 + 247518478 TCCAA-------------------------------------------------------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408128 5 + 131632457 TCCAA-------------------------------------------------------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3611715 5 + 6458163 TCCAA-------------------------------------------------------------------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94007895 5 + 106825570 TCCAA-------------------------------------------------------------------------- i rheMac3.chr12 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17810916 276 + 84719076 I e hg19.chr2 231075575 0 + 243199373 C e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I e rn5.chr9 92336190 0 + 121549591 C a score=1072.000000 s mm10.chr1_GL456221_random 26727 20 + 206961 AATATCATATATT-TTAGTTT s rn5.chr9 92336190 21 + 121549591 AATATCATATATTCTTAGTAC i rn5.chr9 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4092885 0 - 10418462 C e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94007900 0 + 106825570 C e equCab2.chr6 17810916 276 + 84719076 I e nomLeu2.GL397366 3611720 0 + 6458163 C e gorGor3.chr2B 119408133 0 + 131632457 C e panTro4.chr2B 235455974 0 + 247518478 C e hg19.chr2 231075575 0 + 243199373 C e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=239994.000000 s mm10.chr1_GL456221_random 26747 165 + 206961 TCTGT-------------------ACAATGTATAACTGACTAGCACTGAAGGACAA---TTCCCATAGTCAGG----GTGAAGTCAAGGAAGGAGAACCAGCCACATCAGCTACATTA-CCCACCACTGGGGACAGACGGGGCTTCTGTTTGCCTGTCTTGCATTTTATTGGGGCTGT----TTGAGCATCACCTA- s rn5.chr9 92336211 160 + 121549591 TCTGT-------------------ACTATGTAGAATTGACTAGTACTGAAAGACAG---TTCCCTCACTCAGC-----TGAAGTCAAGGAAGGAGAGCCAGCCACATCAGCGACATCA-CCCACCGCTGGGGACAAACGGGATT--------CCTGTCATGCATTTTGTTGAGGCTGTCAGTTTGAGCGTCAGCCA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4092885 163 - 10418462 ---AA-------------------ATGATACAAAAATGACTAGGGTTGAGGGTGGGAGTTCCCCACAGTCAGCGTGAGTGAGGGCAAGGCGGG---TCCATCTGCATT-GCCCTTCCA-CTCACCATTCAGGCTACCCGTGTTT---TTCTGCTTGCTCTGCATCTCAGCAGGGCAGT---TTTGAGCATTCCCTA- i speTri2.JH393335 C 0 I 14 s hg19.chr2 231075575 185 + 243199373 ---ATATCAACTCTTAAACTCCAAGTGATATAGAAATGACCAGGGTTGAAAGTGAAAATTCCCCACAGTCAGG-----TGGGGGCTTGGAAGGAGGACCATCCATGTCTGCTGCAGCAATTCACTATTAGGGCCACACAGTGTTTTTGTTCATTTGCTTTGCATTTTGACAGAGCCGT---TTTGAGCACTACTTT- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235455974 164 + 247518478 ------------------------ATGATATAGAAATGACCAGGGTTGAAAGTGAAAATTCCCCACAGTCAGG-----TGGGGGCTTGGAAGGAGGACCATCCATGTCTGCTGCACCAATTCACTATTAGGGCCACACAGTGTTTTTGTTCATTTGCTTTGCATTTTGACAGAGCCGT---TTTGAGCACTACTTT- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119408133 164 + 131632457 ------------------------ATGATATAGAAATGACCAGGGTTGAAAGTGAAAATTCCCCACAGTCAGG-----TGGGGGCTTGGAAGGAGGACCATCCATGTCTGCTGCACCAATTCACTATTAGGGCCACACAGTGTTTTTGTTCATTTGCTTCGCATTTTGACAGAGCAGT---TTTGAGCACTACTTT- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3611720 164 + 6458163 ------------------------ATGATATAGAAATGACCAGGGTTGAAAGTGAAAATTCCCCACTGTCAGG-----TTGGGGCTTGGAAGGAGGACCATCCATGTCTGCTGCACCAATTCACTATTAGGGCCGCACAGTGTTTTTGTTCATTTGCTTTGCATTTTGACAAAGCAGT---TTTGAGCACTACTTT- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94007900 160 + 106825570 ------------------------ACGACATAGAAATGACCAGGGTTGAAAGTGAAGATTCCCCACCATTAGG-----TTGGGGCTTGGAAGGAGGACCATCCGTGTCTGCTGCACCA--TCACTATTAGGGCCACACAGTGTTTTTATTCATTTTCTTTGCA--TTGACAGAGCAGT---TTTGAGCACTGCTTT- i rheMac3.chr12 C 0 I 1 s equCab2.chr6 17811192 161 + 84719076 -------------------TCCAAACAACTTAGAAATGACGAGAGATGAAATT------TCCCCACAGTCAGG----GTGGGGGCTGGGAAGGAGGACCATCCATGTCGGGGGCAACAATTCAGTGCGAGGGCCACACCATGTTTTTG----TTTGCTTTGCATTTTGATGGAGCAGT---TTTGAGCTTTATCTTA i equCab2.chr6 I 276 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=63586.000000 s mm10.chr1_GL456221_random 26912 41 + 206961 TTGCTGTGACTTCATCACAGCTGCAAGGTCACACAGTCCAG s rn5.chr9 92336371 41 + 121549591 TTGCTGTGAGCTCATCACAGCTGCAAGGTCACACAGTCCAG i rn5.chr9 C 0 C 0 s hg19.chr2 231075761 41 + 243199373 TTGAAGTGGCCTCAGAAGAGTGGCTCTGTCAAACAGTCCAG i hg19.chr2 I 1 C 0 s panTro4.chr2B 235456139 41 + 247518478 TTGAAGTGGCCTCAGAAGAGTGGCTCTGTCAAACAGTCCAG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119408298 41 + 131632457 TTGAAGTGGCCTCAGAAGAGTGGCTCTGTCAAACAGTCCAG i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3611885 41 + 6458163 TTGACGTGGCCTCAGAAGAGTGGCTCTGTCAAACAGTCCAG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94008061 40 + 106825570 TTGAAGAGG-CTCAGAAGAGTGGCTCCGGCAAACAGTCCAG i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17811353 40 + 84719076 TTGAAGTGGCCTCAG-AGAATGGCTGAGTCAAACAGTCCTG i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093048 14 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=270418.000000 s mm10.chr1_GL456221_random 26953 196 + 206961 GCCTG-CCTTGTCCTCT----TCTCTCTTGAAG--CTCACTACAGTCTCCTGTGGCTGA----GGAGTCACCTCTGTTTGTTGACACCG--TAAT--GATTTAGAGTCTAAGTCTAGCAGGTG-TGAGGGGACT-TTGTGATTTTATGATTGGTGGATCCAT--AAGTCTATCT-TTCCAGTCCTGCTTCC-TTGCCCTCTCC--ATAACTCTACCTCC s rn5.chr9 92336412 192 + 121549591 CCCTA-CCTTGTCCTCT----GCTCTCCTGGAG--CCCACTACGGTCTCTTGTGGCTCTATTTGGAATCG--TCTGCTTGTTGACACCAATCAAT--CATTTAGAGTCTAAGTCTAGCAGGTG-TGAGGGGACT-TTCTGATT--------GGTGGATCCAG--AAGTCTGCCT-TTCCCGTCCTGCCTCT-TTGCCTTCCCC--ACAACTCTACATCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4093062 192 - 10418462 GCCTGTTCTTGTGGCCT----TCTCCCCTGCGGTTCCCACTACAATCCCTTGTGGCAGA----GGAATGCTCTCCCTTTGCAGATGCCATGTAGT---ACTTGGAGTCCAAGTTTAGCAGGTA-TACTGGGGCT-TCTGACCTCCATGACTGGT------------GCCTACCTCTTCCAGACCTGCCTCC-AGGCCCTCCCCT-GTGACTCTGCCTCC i speTri2.JH393335 I 14 I 120 s hg19.chr2 231075802 205 + 243199373 -CCTGACTCAGTTCCCT-TGCTTTCCCCTGGGGTTCCTGCCACAACCCTTTGTGGCAGG----TGAATGT--TTCCCTTTCAGGCGCTTTGTGGC---ATTTGGAGTCCAAACCTA-CAGGCACTGGTGGGGCT-CTGTCCAT-CATCATCCGTGGCCCTATCCAAGTCTACCTTTTCCAGACTTGCCTCCTTTGCCCTCCCCCAGGGACTCTGTATCC i hg19.chr2 C 0 I 63 s panTro4.chr2B 235456180 205 + 247518478 -CCTGACTCAGTTCCCTGTGCTTTCCCCTGGGGTTCCTGCCACAACCCTTTGTGGCAGG----TGAATGT--TTCCCTTTCAAGCGCTTTGTGAC---ATTTGGAGTCC-AACCTA-CAGGCACTGGTGGGGCT-CTGTCCAT-CATCATCCGTGGCCCTATCCAAGTCTACCTTTTCCAGACTTGCCTCCTTTGCCCTCCCCCAGGGACTCTGTATCC i panTro4.chr2B C 0 I 63 s gorGor3.chr2B 119408339 206 + 131632457 -CCTGACTCAGTTCCCTGTGCTTTCCCCTGGGGTTCCTGCCACAACCCTTTGTGGCAGG----TGAATGT--TTCCCTTTCAGGTGCTTTGTGGC---ATTTGGAGTCCAAACCTA-CAGGCACTGGTGGGGCT-CTGTCCAT-CATCATCCGTGGCCCTATCCAAATCTACCTTTTCCAGACTTGCCTCCTTTGCCCTCCCCCAGGGACTCTGTATCC i gorGor3.chr2B C 0 I 63 s nomLeu2.GL397366 3611926 203 + 6458163 -CCTGACTCAGTTCCCTGTGCTTTTCCCTGGGGTTCCTGCCACAACCCTTTGTGGCAGG----TGAATGT--TTCCCTTTCAGGTGCTTTGTGGC---ATTTGGAGTCCAAACCTA-CAGATACTGGTGGGGCT-CTGTCCAT-CATCATCCGTGGCCCTATCCAAGTCTACCTTTTCCAGACTTGCCTCTTTTGCCCT-CCCCGGGGACTC--TATCC i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94008101 206 + 106825570 -CCTGACTCAGTTCCCTGTGCTTTCCCCTGGGGTTCCTGCCACAACCCCTTGTGGCAGG----TGAATGT--TTCCCTTTCAGGCACTTTGTGGT---ATTTGGAGTCCAAGCCTA-CAGGTACTGGTGGGGCT-CTGTCCAT-CATCATCTGTGGCCCTATCCAAGTCTACCTTTTCCAGACTTGCCTCCTTTGCCCTCCCCCAGGGACTCTGTATCC i rheMac3.chr12 C 0 I 1009 s equCab2.chr6 17811393 197 + 84719076 CCCTGACTCGATCCCTCGTCCTTTCCT------------CGACATCCTCC--TGGCAGA----TGAATGT--TCTCCCTTCGCAGACCCTGTAGTTGTGTTTGGAGTCCAAATCCAGTGGATACTAGTGGGGCTCCCATCCCT-TATCATCGGTGCTTCCCTCTCAGTCTACTTTTCCCGGACTCATCTCCCTTACCCTTCCTT-GTGACTCTGTCTCC i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=-1325.000000 s mm10.chr1_GL456221_random 27149 4 + 206961 CAAG s rn5.chr9 92336604 4 + 121549591 CAAG i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3612132 3 + 6458163 CAG- i nomLeu2.GL397366 I 3 I 33 s equCab2.chr6 17811590 1 + 84719076 -A-- i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093254 120 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94008307 1009 + 106825570 I e gorGor3.chr2B 119408545 63 + 131632457 I e panTro4.chr2B 235456385 63 + 247518478 I e hg19.chr2 231076007 63 + 243199373 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=1095.000000 s mm10.chr1_GL456221_random 27153 102 + 206961 CTTGGGTGAGGGGCAGGAAGCTAGGCTGAGATGGGAGC-GAGATCCTCATAGCAAGAGGACTCAAATT-CTTTTCTGTTTAGTAGGAAAGTGGAGATGAGCTTA s rn5.chr9 92336608 104 + 121549591 CTTGGGTGAGGAGCGGGAAGCTCAGCTGAGATAGAAATAGACAGCCTCATACCAAGAGGACTCCAATGGCTTTTCTTTTTGGTAGGAAAGTGGAGGTGAGCATA i rn5.chr9 C 0 C 0 s equCab2.chr6 17811591 29 + 84719076 ---------------------------------------------CTCA-------AGAATTCAGGTTTCCTGCTTGTCTA----------------------- i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093254 120 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94008307 1009 + 106825570 I e nomLeu2.GL397366 3612135 33 + 6458163 I e gorGor3.chr2B 119408545 63 + 131632457 I e panTro4.chr2B 235456385 63 + 247518478 I e hg19.chr2 231076007 63 + 243199373 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=2308.000000 s mm10.chr1_GL456221_random 27255 12 + 206961 AGCTATCCCAAG s rn5.chr9 92336712 12 + 121549591 AGCTGTCCCAAT i rn5.chr9 C 0 C 0 s rheMac3.chr12 94009316 12 + 106825570 AGCCACCCTGAG i rheMac3.chr12 I 1009 I 1 s equCab2.chr6 17811620 12 + 84719076 AGCTCTCGTGGA i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093254 120 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e nomLeu2.GL397366 3612135 33 + 6458163 I e gorGor3.chr2B 119408545 63 + 131632457 I e panTro4.chr2B 235456385 63 + 247518478 I e hg19.chr2 231076007 63 + 243199373 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=-3615.000000 s mm10.chr1_GL456221_random 27267 48 + 206961 CAAGGTT----GCTAAGAGTTAAGTCAGCCTTAACTAGCATCACCATGTATG----- s rn5.chr9 92336724 48 + 121549591 GAAGACT----GCTAAGAGTTAGGTCAGCCTTAACCAGCATTACCATGCATG----- i rn5.chr9 C 0 C 0 s hg19.chr2 231076070 20 + 243199373 CAAGATT----GCTGAGAGGCAGG--------------------------------- i hg19.chr2 I 63 C 0 s panTro4.chr2B 235456448 20 + 247518478 CAAGATT----GCTGAGAGGCAGG--------------------------------- i panTro4.chr2B I 63 C 0 s gorGor3.chr2B 119408608 20 + 131632457 CAAGATT----GCTGAGAGGCAGG--------------------------------- i gorGor3.chr2B I 63 C 0 s rheMac3.chr12 94009329 37 + 106825570 TAAGCTG----TATCAGCCCCAGT-----------CGGTATTACCTGGCACA----- i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17811632 29 + 84719076 CTAGGTGAGCAGCCAGAAGCTGGG----------------------------CAAAG i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093254 120 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e nomLeu2.GL397366 3612135 33 + 6458163 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=-16394.000000 s mm10.chr1_GL456221_random 27315 103 + 206961 GTGCC---------AGGGGAACCCAGAGGCCATGCTCCTGAGTCA----TCTTGCTTGTTAGTCTTGGATGTTAAGTTGTCTTTGACAACTGAAGGAGGAAGGAAAGGG---TTGGGTT s rn5.chr9 92336772 103 + 121549591 GTGCC---------AGGAGAACCCGGAGGCTGTGCTCCTGAGTCA----TCTCGATTGTTAGTCTTGGATGTTAAGATGTCTTTGACAACTGGAGGAAGAAGGAAAAGG---GTGGGTT i rn5.chr9 C 0 C 0 s hg19.chr2 231076090 76 + 243199373 --------------AGGAGAGCCC-------CCTCTCTAGAAGAT----CC---------------GAATGGCTTTTCCTC-TTAGTAAACACAGAAACAAAGGCAAGC-TTTTAGGT- i hg19.chr2 C 0 I 1009 s panTro4.chr2B 235456468 76 + 247518478 --------------AGGAGAGCCG-------CCTCTCTAGAAGAT----CC---------------GAATGGCTTTTCCTC-TTAGTAAACACAGAAACAAAGGCAAGC-TTTTAGGT- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119408628 76 + 131632457 --------------AGGAGAGCCC-------CCTCTCTAGAAGAG----CC---------------GAATGGCTTTTCCTC-TTAGTAAACACAGAAACAAAGGCAAGC-TTTTAGGT- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3612168 52 + 6458163 GTGCT---------GGGTGAA---------------CTGGAAGCTGGGCCA---------------AGATTGCTGTT---------------GAGAGGCAGGAGGA------------- i nomLeu2.GL397366 I 33 C 0 s rheMac3.chr12 94009366 105 + 106825570 GTGCTAGC--GAGGAGGCTGGGCA-------TCTCTTCTGAGTCT----TCTTCCTCATTCATTTTGGATGTCAACTCATCATTGGTCACTGAAGGAGGAAAGGAAATTATTACAGAT- i rheMac3.chr12 C 0 I 1 s equCab2.chr6 17811661 77 + 84719076 ATGGCAATAGAGAGCAGAGAGCAC-------TGTTCCTAGAAGGT----CA---------------GCATGGCTTCTGCTC-TTGGAAGACACAAAAACTAAGG--------------- i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093254 120 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=304.000000 s mm10.chr1_GL456221_random 27418 30 + 206961 ACT-GAACTGCCTGTCAGGGAGG--AAAGTGGA s rn5.chr9 92336875 30 + 121549591 ACC-AAACTGGCTGTCAGGGAGG--AGAGTGGA i rn5.chr9 C 0 C 0 s hg19.chr2 231077175 31 + 243199373 GCAGGGACTGGATGTCAGGGAGA--AGAGTGAA i hg19.chr2 I 1009 C 0 s nomLeu2.GL397366 3612220 29 + 6458163 ----GAGCCCCCTCCCTAGAAGATCCAAATGGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009472 31 + 106825570 ACAGCGACTGGATGTCAGGGAGG--AGGGTGAA i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17811738 6 + 84719076 ---CGAACT------------------------ i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093254 120 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e gorGor3.chr2B 119408704 1 + 131632457 I e panTro4.chr2B 235456544 1 + 247518478 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=-11773.000000 s mm10.chr1_GL456221_random 27448 31 + 206961 TGGTATACTCGCCCAGAAAAGG-AGGTCACTA s rn5.chr9 92336905 29 + 121549591 TGGTGTACATGCCC--AAAAGG-AGGACGCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4093374 17 - 10418462 TGGTACACACA-----AAAAGG---------- i speTri2.JH393335 I 120 C 0 s hg19.chr2 231077206 32 + 243199373 TGTTAAAAGTGCCTGGGGCAGATAGAGCATCA i hg19.chr2 C 0 T 1071 s nomLeu2.GL397366 3612249 26 + 6458163 TTTTC------CTCTCAGTAGACACAGAAACA i nomLeu2.GL397366 C 0 I 18 s rheMac3.chr12 94009503 32 + 106825570 TGTTAAAAGTGCCTGGAACAGATAGAGCATCA i rheMac3.chr12 C 0 T 1071 s equCab2.chr6 17811744 17 + 84719076 ----TAACTCATCCAAATCAC----------- i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e gorGor3.chr2B 119408704 1 + 131632457 I e panTro4.chr2B 235456544 1 + 247518478 I e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=91.000000 s mm10.chr1_GL456221_random 27479 1 + 206961 A s rn5.chr9 92336934 1 + 121549591 A i rn5.chr9 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093391 0 - 10418462 C e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009535 1071 + 106825570 T e equCab2.chr6 17811761 0 + 84719076 C e nomLeu2.GL397366 3612275 18 + 6458163 I e gorGor3.chr2B 119408704 1 + 131632457 I e panTro4.chr2B 235456544 1 + 247518478 I e hg19.chr2 231077238 1071 + 243199373 T e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=11360.000000 s mm10.chr1_GL456221_random 27480 10 + 206961 GGCCAAAGGC s rn5.chr9 92336935 10 + 121549591 AGTCAAAGGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4093391 9 - 10418462 -TCCAAATGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231076167 10 + 243199373 GACCAAACCA i hg19.chr2 T 1071 C 0 s panTro4.chr2B 235456545 10 + 247518478 GACCAAACCA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119408705 10 + 131632457 GACCAAACCA i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3612293 10 + 6458163 GACCAAACCA i nomLeu2.GL397366 I 18 C 0 s rheMac3.chr12 94008464 10 + 106825570 GACTAAACCA i rheMac3.chr12 T 1071 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17811761 0 + 84719076 C e calJac3.chr6 146677955 4405 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=164693.000000 s mm10.chr1_GL456221_random 27490 65 + 206961 AGATTACTTGACTCGGGTCCTGAAGGACTGTGGGGCATCTCTCGAGAGTCTTCCTTATCTTTT---------CT s rn5.chr9 92336945 65 + 121549591 AAGTCACCTGCTTCGGGTCCTGAGGGATGGTGGGGCATCTCTTGAGAGTCTTCCTTATCTTTT---------CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4093400 58 - 10418462 GAAGAACCTGGAATAGCACCTGAGGGGGTATG---------------GTCTTCCTTATCTTTTGTTTGAG-GGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231076177 74 + 243199373 AGATTACCTGGCATAGAGCCCAAGGGAGAGTGGGGCATCTCTTGAGGGTCTTCTTTATCTCTTATTTGGGGGAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235456555 74 + 247518478 AGATTACCTGGCATAGAGCCCAAGGGAGAGTGGGGCATCTCTTGAGGGTCTTCTTTATCTCTTATTTGGGGGAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408715 74 + 131632457 AGATTACCTGGCATAGAGCCCAAGGGAGAGTGGGGCATCTCTTGAGGGTCTTCTTTATCTCTTATTTGGGGGAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612303 71 + 6458163 AGATTAGCTGGCATAGAGCCCAAGGGAGAGTGGGGCATCTCTTGAGGG---TCTTTATCTTTTAGTTGGGGGAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94008474 74 + 106825570 AGATTACCTGGCATAGAGCCCAACGGAGAGTGGGGCGTCTCTTGGGGGTCTTCTTTATCTTTTATTTGGGAGAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146682360 74 + 158406734 AGATTACCTGGCATAGGGCCTGAGGGGGAGCGGGGCATCTCTTGAAGGCCTTCGTTATCTTTTATTTGGGGGAT i calJac3.chr6 I 4405 C 0 s equCab2.chr6 17811761 73 + 84719076 -GTTTACCTTGCACTGGGCCTGAGGGAGCACAGGGCATTTCTTGAGTGTCTTCTTTGACTTTTATTTGGGGGTT i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 56919 6598 + 176633 I a score=5695.000000 s mm10.chr1_GL456221_random 27555 2 + 206961 CG s rn5.chr9 92337010 2 + 121549591 CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4093458 2 - 10418462 CT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231076251 2 + 243199373 CA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235456629 2 + 247518478 CA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408789 2 + 131632457 CA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612374 2 + 6458163 CA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94008548 2 + 106825570 CA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146682434 2 + 158406734 CA i calJac3.chr6 C 0 C 0 s micMur1.scaffold_3075 63517 2 + 176633 CA i micMur1.scaffold_3075 I 6598 I 27938 s equCab2.chr6 17811834 2 + 84719076 CA i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I a score=34175.000000 s mm10.chr1_GL456221_random 27557 10 + 206961 GGTGATCTCT s rn5.chr9 92337012 10 + 121549591 GGTGATCTCT i rn5.chr9 C 0 M 1183 s speTri2.JH393335 4093460 10 - 10418462 GGTTGTCACT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231076253 10 + 243199373 GGTTGTCACT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235456631 10 + 247518478 GGTTGTCACT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408791 10 + 131632457 GGTTGTCACT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612376 10 + 6458163 GGTTGTCACT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94008550 10 + 106825570 GGTTGTCACT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146682436 10 + 158406734 GGTTGTCACT i calJac3.chr6 C 0 C 0 s equCab2.chr6 17811836 10 + 84719076 GGTTGTCACT i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=266456.000000 s mm10.chr1_GL456221_random 27567 150 + 206961 GGAGGACACTGTGAAGAGGGAAGAAAAA--GAATTGAGGCTTTCAGGTTGAGCAAGTAGGGGCCAGAGTGGTAAAGAGAACAG-----TGATTCTAACCAGTAAGGA------AG-TAAGGAAG--GCAGGTGACCAGGAAAAGGTAGGATAGAG-ACGGGACAGAA s speTri2.JH393335 4093470 160 - 10418462 GGAGGACACTGACCAGAGGGAA-ATAAA--AAATTCTAGATTCCAGGACCAGAAAGTGGGGACCAGAGTGAGGAGGTGGAAAG-TAATTGATTCCAGCTAGTAAAAATAAT-GGG-TGACCAAGC-ACCAATGCCCAGGCAAGGGTGGGACAGAGTGAGGAAGTGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231076263 154 + 243199373 ---GGCCACTGAATGGAGGAAG---AAA--AAGTTTTAGATCTCAGGAACAGCAAGCAGGGACCAGAATGAGGAGAAAAGAGAATGCTCTATTCCAACAAGTAAAAATGACGGGG-TAAC--AGCAACCAAGGCCTGGGAAAGGATGGCATAGAGTGGGAAAGTA-- i hg19.chr2 C 0 I 31 s panTro4.chr2B 235456641 154 + 247518478 ---GGCCACTGAATGGAGGAAG---AAA--AAGTTTTAGATCTCAGGAACAGCAAGCAGGGACCAGAATGAGGAGAAAAGAGAATGCTCTATTCCAACAAGTAAAAATGATGGGG-TAAC--AGCAACCAAGGCCTGGGAAAGGATGGCATAGAGTGGGAAAGTA-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408801 154 + 131632457 ---GGCCACTGAATGGAGGAAG---AAA--AAGTTTTAGATCTCAGGAACAGCAAGCAGGGACCAGAATGAGGAGGAAAGAGAATGCTCTATTCCAACAAGTAAAAATGACGGGG-TAAC--AGCAACCAAGGCCTGGGAAAGGATGGCATAGAGTGGGAAAGTA-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612386 146 + 6458163 ---GGCCACTGAATGGAGGAAG---AAA--AAGTTTTAGATCTCAAGAACAGCAAGCAGGGACCAGAATGAGGAGGAAAGAGAATGCTCTATTCCAACAAGTAAAAATGATGGGG-TAACTGAGCAACCAAGGCCTGGGGAAGGATGGCATAGAG------------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94008560 146 + 106825570 ---GGCCACTGAACGGAGGAAG---AAA--AAGTTTCAGATCTCAGGAACAGCAAGCAGGGACCAGAATGAGGAGGAAAGAGAATGCTCTATTCCAACAAGTAAAAATGACAGGG-TAACTGAGCAACCAAGGCCTGGGGAAGGATGGGATGGAG------------ i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146682446 146 + 158406734 ---GGCCACTGAAAGGAGGAAG---AAA--AAGTTGCAGATCTCAGGAACAACAAGCAGGGACCAGAGTGAGGGGGGAAGAGAATGCTCTATTCCAACAAGTAAAAACAATGGAG-TGACTGAGCAACCACGGCCTGGGCAGGGGTGGGACAGAG------------ i calJac3.chr6 C 0 C 0 s equCab2.chr6 17811846 147 + 84719076 ---GGATGCTGAGCAGAGGAAG---AAAGGAAATGTCAGATCCCAGGACCAGCAAGGAGGGACCAGAGGTAGAAGGAATGAGAACAATCTATTCCAGCCAGTAAAAATGATGGGGCCAACTGAAC-ACCAAGGCCT-GGCAAGGGTGGGAGAGAG------------ i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=-2075.000000 s mm10.chr1_GL456221_random 27717 5 + 206961 TAGTT---- s speTri2.JH393335 4093630 5 - 10418462 CAATT---- i speTri2.JH393335 C 0 I 49 s nomLeu2.GL397366 3612532 1 + 6458163 ----T---- i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94008706 1 + 106825570 ----T---- i rheMac3.chr12 C 0 I 4 s calJac3.chr6 146682592 1 + 158406734 ----T---- i calJac3.chr6 C 0 I 4 s equCab2.chr6 17811993 5 + 84719076 ----TGGGA i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e turTru2.JH490333 10111 10928 - 53618 I e gorGor3.chr2B 119408955 0 + 131632457 C e panTro4.chr2B 235456795 0 + 247518478 C e hg19.chr2 231076417 31 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=350.000000 s mm10.chr1_GL456221_random 27722 7 + 206961 TAATAAC s panTro4.chr2B 235456795 2 + 247518478 -----AG i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119408955 2 + 131632457 -----AG i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3612537 7 + 6458163 AGGTAAG i nomLeu2.GL397366 I 4 I 4 s rheMac3.chr12 94008711 7 + 106825570 AAGTAAG i rheMac3.chr12 I 4 I 1 s calJac3.chr6 146682597 7 + 158406734 AAATAAG i calJac3.chr6 I 4 I 1 s equCab2.chr6 17811998 6 + 84719076 GAGTAA- i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093635 49 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e hg19.chr2 231076417 31 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=-2230.000000 s mm10.chr1_GL456221_random 27729 2 + 206961 AA- s panTro4.chr2B 235456798 2 + 247518478 AA- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119408958 2 + 131632457 AA- i gorGor3.chr2B I 1 C 0 s rheMac3.chr12 94008719 2 + 106825570 AA- i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146682605 1 + 158406734 A-- i calJac3.chr6 I 1 C 0 s equCab2.chr6 17812004 2 + 84719076 -AC i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093635 49 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e nomLeu2.GL397366 3612544 4 + 6458163 I e hg19.chr2 231076417 31 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=-1282.000000 s mm10.chr1_GL456221_random 27731 37 + 206961 -GATCt-----cttcttcttcttcttcttcttcttcttcttct s calJac3.chr6 146682606 42 + 158406734 -AACATTCACACTCAGTTATCCACTTGTTCTTCCCTTGCTGTT i calJac3.chr6 C 0 I 210 s equCab2.chr6 17812006 37 + 84719076 AATCATTTCCTTTCAATTAGCTACTTATTAATTTAAT------ i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093635 49 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94008721 0 + 106825570 C e nomLeu2.GL397366 3612544 4 + 6458163 I e gorGor3.chr2B 119408960 0 + 131632457 C e panTro4.chr2B 235456800 0 + 247518478 C e hg19.chr2 231076417 31 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=-1966.000000 s mm10.chr1_GL456221_random 27768 71 + 206961 tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcctctcctcc s equCab2.chr6 17812043 16 + 84719076 AATGGTACTTATTTTT------------------------------------------------------- i equCab2.chr6 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093635 49 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94008721 0 + 106825570 C e nomLeu2.GL397366 3612544 4 + 6458163 I e gorGor3.chr2B 119408960 0 + 131632457 C e panTro4.chr2B 235456800 0 + 247518478 C e hg19.chr2 231076417 31 + 243199373 I e calJac3.chr6 146682648 210 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=207.000000 s mm10.chr1_GL456221_random 27839 1 + 206961 t s panTro4.chr2B 235456800 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408960 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94008721 1 + 106825570 C i rheMac3.chr12 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093635 49 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17812059 0 + 84719076 C e nomLeu2.GL397366 3612544 4 + 6458163 I e hg19.chr2 231076417 31 + 243199373 I e calJac3.chr6 146682648 210 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=1921.000000 s mm10.chr1_GL456221_random 27840 4 + 206961 cctC s panTro4.chr2B 235456801 4 + 247518478 CGTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408961 4 + 131632457 CGTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612548 4 + 6458163 CATT i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94008722 4 + 106825570 CATT i rheMac3.chr12 C 0 C 0 e echTel1.scaffold_187355 1974 1059 - 8640 I e speTri2.JH393335 4093635 49 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17812059 0 + 84719076 C e hg19.chr2 231076417 31 + 243199373 I e calJac3.chr6 146682648 210 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=3622.000000 s mm10.chr1_GL456221_random 27844 17 + 206961 CACCTCCTCCTCTTCAC-- s panTro4.chr2B 235456805 17 + 247518478 CACTCTCAATTAGCCAC-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408965 17 + 131632457 CACTCTCAATTAGCCAC-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612552 17 + 6458163 CACTCTCAATTAGCCAC-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94008726 17 + 106825570 CACTCTCAATTAGCCGC-- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17812059 5 + 84719076 --TTCTT------------ i equCab2.chr6 C 0 C 0 s echTel1.scaffold_187355 3033 19 - 8640 CACTTGCTTTTCAATTCCT i echTel1.scaffold_187355 I 1059 C 0 e speTri2.JH393335 4093635 49 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e hg19.chr2 231076417 31 + 243199373 I e calJac3.chr6 146682648 210 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=-1648.000000 s mm10.chr1_GL456221_random 27861 11 + 206961 TTGAAAATGTA s speTri2.JH393335 4093684 11 - 10418462 TTGAAAATCTT i speTri2.JH393335 I 49 C 0 s panTro4.chr2B 235456822 4 + 247518478 TTGT------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408982 4 + 131632457 TTGT------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612569 4 + 6458163 TTGT------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94008743 4 + 106825570 TTGT------- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17812064 11 + 84719076 TTGAAAATCTG i equCab2.chr6 C 0 C 0 s echTel1.scaffold_187355 3052 11 - 8640 TTGAACATTCA i echTel1.scaffold_187355 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e hg19.chr2 231076417 31 + 243199373 I e calJac3.chr6 146682648 210 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=2585.000000 s mm10.chr1_GL456221_random 27872 10 + 206961 GATAATGAAA s speTri2.JH393335 4093695 10 - 10418462 GGAGATGGAA i speTri2.JH393335 C 0 C 0 s calJac3.chr6 146682858 10 + 158406734 GGGAAGGGGA i calJac3.chr6 I 210 C 0 s equCab2.chr6 17812075 10 + 84719076 GAAGATGGAA i equCab2.chr6 C 0 C 0 s echTel1.scaffold_187355 3063 9 - 8640 -GCAATAGAT i echTel1.scaffold_187355 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94008747 0 + 106825570 C e nomLeu2.GL397366 3612573 0 + 6458163 C e gorGor3.chr2B 119408986 0 + 131632457 C e panTro4.chr2B 235456826 0 + 247518478 C e hg19.chr2 231076417 31 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=471092.000000 s mm10.chr1_GL456221_random 27882 242 + 206961 TCTCCTATTGACATTAGATTTCTG---ATTATGTTAAAGTTATTTGAATA--GCAAATGTCAG---------------AGGAGTGG---AGGAAAA-----GTTATT----------------------GAGTCC-ATACTCTTTTATTCCC----AACTCTGGA-ACGCAATGTCAGTCTT--CAGCAATGTCAGTAATACATCCTGCT-----------ATAGTTAATGTAACTAAACTTTATTTTTATAATGATGCTTTAGG----GAAGGCAAGTGGCACAAGTCTGGAAGCTCA--ATTAGGTCCAACAGAC s speTri2.JH393335 4093705 255 - 10418462 TCACCCATTGTTGTGAGCTTCCTGATTATTATGTCAACTTTATCAGGATAGTGCACAGGAAAC---------------AGATTTGG---ATCAAAT-----A----G----------------------GACCCC-TTATTATACTGGTACCAGAGAGCTCAGAACCCACAATATCATTTTTGACAATAACATAATTAATA-ATAGTACTAGACCACGGTAATATTTAATGTAGCCAA----TTCCATTATAAAAATGGCTTGGG----GAAAACAAGTGACAAAAGTTGAGAAGCTAA--CTTGGGTCCAACTTA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231076448 255 + 243199373 TCTTCCATTGCTGTTAGCTTCCTG---ATTATGTTAACCTT-TTTGGATG--GTAGGTATTAG---------------AGGAGTGG---ATGCAAT-----ATTATT-----------TGGATCGAAGAGGACCC-CTCTTCT--CAGTACTGGAGAGCTCAGAATCCATGGTATCATTTTTGACAATGCCCAATATCATA-CCATTCTT-----------ACGTTTAATGTAATCAAA---CTCCATTATGATGATGGTTTGGG----GAGGACAAGTGATACAATTTGAGAAGCTAAATATTAGGTCTAGCAGAC i hg19.chr2 I 31 C 0 s panTro4.chr2B 235456826 255 + 247518478 TCTTCCATTACTGTTAGCTTCCTG---ATTATGTTAACCTT-TTTGGATG--GTAGGTGTTAG---------------AGGAGTGG---ATGCAAT-----ATTATT-----------TGGATCGAAGAGGACCC-CTCTTCT--CAGTACTGGAGAGCTCAGAATCCATGGTATCATTTTTGACAATGCCCAATATCATA-CCATTCTT-----------ACATTTAGTGTAATCAAA---CTCCATTATGATGATGGTTTGGG----GAGGACAAGTGATACAATTTGAGAAGCTAAATATTAGGTCTAGCAGAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119408986 254 + 131632457 TCTTCCATTGCTGTTAGCTTCCTG---ATTATGTTAACCTT-TTTGGATG--GTAGGTATTAG---------------AGGAGTGG---ATGCAAT-----ATTATT-----------TGGATCAAAGAGGACCC-CTCTTCT--CAGTACTGGAGAGCTCAGAATCCATGATATCATTTTTGGCAATGCCCAATATCATA-CCATTCTT-----------ACATTTAATGTAATCAAA---CTCCATTATGATGATGGTTTGGG----GAGGACAAGTGATAC-ATTTGAGAAGCTAAATATTAGGTCTAGCAGAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612573 255 + 6458163 TCTTCCATTGCTGTTAGCTTCCTG---ATTATACTAAGCTT-TTTGGATG--GTAGGTATTAG---------------AGGAGTGG---ATGAAAT-----ATTATT-----------TGGATCGAAGAGGACCC-CTCTTCT--CAGTACTGGAGAGCTCAGAATCCATGATAGCATTTTTGACAATGCCCAATATGATA-CCATTCTT-----------ATATTTAATGTAATCAAA---CTCCATTATGATGACGGTTTGGG----GAGGACAAGTGATACCATTTTAGAAGCTAAATATCAGGTCTAGCAGAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94008747 255 + 106825570 TCTTCCATTGCTGTTAGCTTCCTG---ATTATGTTAACCTT-TTTGGATG--GTAGGTATTAG---------------AGGAGTAG---ATGAAAT-----ATTATT-----------TGGATCGAAGAGGAACC-CTCTTCT--CAGTACTGGAGAGCTCGAGATCCATGATATCATTTTTGACAATGCCCAATATCATA-CCATTCTT-----------ATATTTAATGTAATTAAA---CTCCATTATGACAATGGTTTGGG----GAGGGCAAGTGATACAATTTTAGAAGCTACATATCAGGTCTAGCAGAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146682868 276 + 158406734 TTTTGTATTAC----------------ATAAAGGGATTTCT-TATGAAGG--GGATTTCTTAACACATGCCTTTCAGTAGGAGGGGGCCATGGAATTATTCGTTGTTCCCCAGGTGCATACATCAAAGAGGACCC-CTATTCT--CAGTACTGGAGAGCTCAGAATCCATGATCTCAGTTTTGACAATGCCCAATAACATA-CCATTCTT-----------ATATTTAATGTAACCAAA---TTCCATTACGACAATGGTTTGGG----GAGGACAAGTAGGACAATTTTAGAAGCTAAATATCAGGTCGAGCAGAC i calJac3.chr6 C 0 C 0 s equCab2.chr6 17812085 252 + 84719076 TCTTCCATTGTTATTGGCTTCATG---ATTATGTTAATCTTATTTGGATG--GTATGTATTAG---------------AGGAGTGG---AGGAAAC-----ATT--------------TGGACCAAATAGGGCCCTTTAGTCT--CAGTATTGAAGAGCTCAGAATCCATGATACCATTTTTGACAGCACCCAATAATCTT-CCACTGTC-----------ATATTTAATGTAATCATA---GTCTTTTATAATGATGGTTTGGG----GGAGCTAAGGGACACAGTTTTAGAAGCTAA--ATCAGGTCCAGCAGAC i equCab2.chr6 C 0 C 0 s echTel1.scaffold_187355 3072 242 - 8640 TCTTTCAGTGCTGTTAGCCTCTTT---ACTGTGTT--TCTTATCTGCATG--ATGTGCATTAG---------------AGGGAAAG---AGG--AT-----GTTATA-----------------------GTCCC-TTCCTCT--CTGCTCTTGAAGGCTCAGAATTCATGATGCCACTTTAGACAGTATCTAGTAATATA-CCAGTGTT-----------ATAGTTAGTGCAATAAAA---CTTTTTCATAATGATGACTGGGGGTAAGATGGCAAAGAACACAATTTTAGAAGCTAA--ATCAGCTTCAGGAGAC i echTel1.scaffold_187355 C 0 N 0 e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=113603.000000 s mm10.chr1_GL456221_random 28124 76 + 206961 A--TAAAGTTTTCACAATATTTTCTAATAATG---TTAATAGCATATATATGTCTTAGAATCTGAGTCATCTAAA---------------AATAAA------ s speTri2.JH393335 4093960 55 - 10418462 ---------TTTTATGATATTTTCTAATAATAATTTCCATAGCAT-TGT---TCTTATAATCCAATCC---------------------------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231076703 68 + 243199373 CTTTAAACATTTTATCATCTTTTCTAGTAATT---TTGATAACAT-TGT---TCTTAGAATCCAAACCATATAAA--------------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457081 68 + 247518478 CTTTAAACACTTTATCATCTTTTCTAGTAATT---TTGATAACAT-TGT---TCTTAGAATCCAAACCATATAAA--------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409240 68 + 131632457 CTTTAAACATTTTATCATCTTTTCTAGTAATT---TTGATAACAT-TGT---TCTTAGAATCCAAACCATATAAA--------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612828 68 + 6458163 CTTTAAACATTTTGCCATCTTTTCTAGTAATT---TTGATAACAT-TGT---TCTTAGAATCCAAACCATACAAA--------------------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009002 75 + 106825570 CTGTAGACATTTTATCATCTTTTCTAGTAATT---TTGAT--CAT-TGC---TCTTAGAATCCAAACCACATAAAAATGAAGAA------------------ i rheMac3.chr12 C 0 I 101 s calJac3.chr6 146683144 74 + 158406734 ATTTAACTATTTTATCATCTTTTCTAGTAATT---TTGGTAATAT-TGC---TCTAAGAATCCAAACCATATAAA---------AATGAA------------ i calJac3.chr6 C 0 I 230 s equCab2.chr6 17812337 73 + 84719076 CTTTAAATA-TTTATCATCTTTTCTAATAATT---TCAATAACAT-TAT---TCTTAGAATCCAAACCATATAAA---------------------AATGAA i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=175.000000 s mm10.chr1_GL456221_random 28200 8 + 206961 CAAAgggg s equCab2.chr6 17812410 8 + 84719076 TATGGGAG i equCab2.chr6 C 0 I 107 e speTri2.JH393335 4094015 0 - 10418462 C e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009077 101 + 106825570 I e nomLeu2.GL397366 3612896 0 + 6458163 C e gorGor3.chr2B 119409308 0 + 131632457 C e panTro4.chr2B 235457149 0 + 247518478 C e hg19.chr2 231076771 0 + 243199373 C e calJac3.chr6 146683218 230 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=12401.000000 s mm10.chr1_GL456221_random 28208 112 + 206961 ctaggggtgtagatcagtggtggagtgcttatctggcaggcagtaggccttgggttctactcttgacatactatgaaatagaaaagaaTGAATAAGGTTGAGACTCAAAGGC s speTri2.JH393335 4094015 33 - 10418462 -------------------------------------------------------------------------------AAAGAAGAATGGATAAGGCTGACACACAAAGGC i speTri2.JH393335 C 0 I 36 s hg19.chr2 231076771 26 + 243199373 -------------------------------------------------------------------------------AATGAAGAATG-------TTGAAACTCTAAGGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457149 26 + 247518478 -------------------------------------------------------------------------------AATGAAGAATG-------TTGAAACTCTAAGGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409308 26 + 131632457 -------------------------------------------------------------------------------AATGAAGAATG-------TTGAAACTCTAAGGC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612896 26 + 6458163 -------------------------------------------------------------------------------AATGAAGAATG-------TTGAAACTCAAAGGC i nomLeu2.GL397366 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009077 101 + 106825570 I e equCab2.chr6 17812418 107 + 84719076 I e calJac3.chr6 146683218 230 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=16225.000000 s mm10.chr1_GL456221_random 28320 65 + 206961 TTCTGGAGCTAGGGAAGAATCATCAACTATAAGTTTGTAATAAGCTAT------------------------GTGTCAAC----------------TAAGAACAG s hg19.chr2 231076797 42 + 243199373 CCCCATAATCAGGTGGGGGTGA--------------GGAATCAGCTAA------------------------GGGTCACT------------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457175 42 + 247518478 CCCCATAATCAGGTGGGGGTGA--------------GGAATCAGCTAA------------------------GGGTCACT------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409334 42 + 131632457 CCCCATAATCAGGTGTGGGTGA--------------GGAATCAGCTAA------------------------GGGTCACT------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612922 42 + 6458163 CCCCATAATCAGGTGGGGCTGA--------------GGAATCAGCTAA------------------------GGGTCACT------------------------- i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146683448 79 + 158406734 -TTCAGAAT--GGTGGGCGTGA--------------GGAATCCGCTAAGGGTCACTAGCGTGAGCGTTACGTAGGTTACTTGTCAATTGAGAATGG--------- i calJac3.chr6 I 230 I 258 e speTri2.JH393335 4094048 36 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009077 101 + 106825570 I e equCab2.chr6 17812418 107 + 84719076 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=5651.000000 s mm10.chr1_GL456221_random 28385 79 + 206961 gagagagagagagaaggagagagagagagagagagagagagagagagagagagagagagagagagagagagatatgcag s hg19.chr2 231076839 18 + 243199373 -------------------------------------------------------------AGTGTGAGTGTTACGCAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457217 18 + 247518478 -------------------------------------------------------------AGTGTGAGTGTTACGCAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409376 18 + 131632457 -------------------------------------------------------------AGTGTGAGTGTTACGCAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3612964 18 + 6458163 -------------------------------------------------------------AGTGTGAGTGTTATGCAG i nomLeu2.GL397366 C 0 I 24 e speTri2.JH393335 4094048 36 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009077 101 + 106825570 I e equCab2.chr6 17812418 107 + 84719076 I e calJac3.chr6 146683527 258 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=0.000000 s mm10.chr1_GL456221_random 28464 29 + 206961 agagacagagacatagagagagGAACCTT e speTri2.JH393335 4094048 36 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009077 101 + 106825570 I e equCab2.chr6 17812418 107 + 84719076 I e nomLeu2.GL397366 3612982 24 + 6458163 I e gorGor3.chr2B 119409394 0 + 131632457 C e panTro4.chr2B 235457235 0 + 247518478 C e hg19.chr2 231076857 0 + 243199373 C e calJac3.chr6 146683527 258 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=-1526.000000 s mm10.chr1_GL456221_random 28493 26 + 206961 -GCATCTACCAAGGAAGTGATCTTCCA- s speTri2.JH393335 4094084 27 - 10418462 -GCATTTCCCACGTGGGTGTTGTGCAAG i speTri2.JH393335 I 36 C 0 s hg19.chr2 231076857 11 + 243199373 GTTACTTGTCA----------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457235 11 + 247518478 GTTACTTGTCA----------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119409394 11 + 131632457 GTCACTTGTCA----------------- i gorGor3.chr2B C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009077 101 + 106825570 I e equCab2.chr6 17812418 107 + 84719076 I e nomLeu2.GL397366 3612982 24 + 6458163 I e calJac3.chr6 146683527 258 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=1145.000000 s mm10.chr1_GL456221_random 28519 16 + 206961 CTGTGCTACACCCCAG s speTri2.JH393335 4094111 16 - 10418462 GTGCGCGTCAATTCAG i speTri2.JH393335 C 0 C 0 s equCab2.chr6 17812525 16 + 84719076 CTGTTGGACATCCCAG i equCab2.chr6 I 107 C 0 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009077 101 + 106825570 I e nomLeu2.GL397366 3612982 24 + 6458163 I e gorGor3.chr2B 119409405 0 + 131632457 C e panTro4.chr2B 235457246 0 + 247518478 C e hg19.chr2 231076868 0 + 243199373 C e calJac3.chr6 146683527 258 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=-2285.000000 s mm10.chr1_GL456221_random 28535 14 + 206961 ACCCACACCAGTAT-------------- s speTri2.JH393335 4094127 5 - 10418462 ---------AAGAG-------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231076868 9 + 243199373 -----ATTCAGAAT-------------- i hg19.chr2 C 0 I 4 s panTro4.chr2B 235457246 9 + 247518478 -----ATTCAGAAT-------------- i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119409405 9 + 131632457 -----ATTCAGAAT-------------- i gorGor3.chr2B C 0 I 4 s calJac3.chr6 146683785 9 + 158406734 -----ATTCAGAAT-------------- i calJac3.chr6 I 258 I 5 s equCab2.chr6 17812541 23 + 84719076 -----CATCAGACTGGCTGTGGTGGTAT i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009077 101 + 106825570 I e nomLeu2.GL397366 3612982 24 + 6458163 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=85215.000000 s mm10.chr1_GL456221_random 28549 59 + 206961 TTTTGACTTTTGGTTTGCTCTG------TGA-GTCTAAGGACAGCC--CTCTCTGCTTTTCTCCCCTT s speTri2.JH393335 4094132 65 - 10418462 ATTTGATTGTTGTTTGGCTTTGCA---CTGACGTTGGTGAACCACCTGCCCCTTGTCATCCCCAGCTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231076881 66 + 243199373 TTTTGGTTGTTGGTTTGTTTTGCATTGCTGC-GTTGGTGAATTGGCC-CCTTCTGTTTCTTTTCCTTT i hg19.chr2 I 4 I 13 s panTro4.chr2B 235457259 66 + 247518478 TTTTGGTTGTTGGTTTGTTTTGCATTGCTGT-GTCAGTGAATTGGCC-CCTTCTGTTCCTTTTCCTTT i panTro4.chr2B I 4 I 13 s gorGor3.chr2B 119409418 66 + 131632457 TTTTGGTTGTTGGTTTGTTTTGCATTGCTGC-GTTGGTGAATTGGCC-CCTTCTGTTTCTTTTCCTTT i gorGor3.chr2B I 4 I 13 s nomLeu2.GL397366 3613006 66 + 6458163 TTTTGGTTGTTGGTTTGTTTTGCATTGCTGC-GTCGGTGAATTGGCC-CCTTCTGTTTCTTTTCCTTT i nomLeu2.GL397366 I 24 I 13 s rheMac3.chr12 94009178 66 + 106825570 TTTTGGTTGTTGGTTTGTTTTGCATTACTGC-ATTGGTGAATTGGCC-CCTTCTGTTTCTTTTCCTTT i rheMac3.chr12 I 101 I 1 s calJac3.chr6 146683799 62 + 158406734 -TTTGGTTGTCCGTTTGTTTTGCATTGCTGC-ATTGGGGAACAAA----TGTCTGCTTCTTTGTCTTT i calJac3.chr6 I 5 I 13 s equCab2.chr6 17812564 60 + 84719076 CCTTGACAAGCGGTC-------CTGTGCCCA-GTCAGTGCATCAGTCCTCTTCTGTTTCTTTCTTTTT i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=4423.000000 s mm10.chr1_GL456221_random 28608 2 + 206961 TT s speTri2.JH393335 4094197 2 - 10418462 TT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231076960 2 + 243199373 CT i hg19.chr2 I 13 C 0 s panTro4.chr2B 235457338 2 + 247518478 CT i panTro4.chr2B I 13 C 0 s gorGor3.chr2B 119409497 2 + 131632457 CT i gorGor3.chr2B I 13 C 0 s nomLeu2.GL397366 3613085 2 + 6458163 CT i nomLeu2.GL397366 I 13 C 0 s rheMac3.chr12 94009245 1 + 106825570 -T i rheMac3.chr12 I 1 I 13 s papHam1.scaffold15394 17800 1 - 58077 -T i papHam1.scaffold15394 N 0 I 3573 s calJac3.chr6 146683874 2 + 158406734 CT i calJac3.chr6 I 13 C 0 s equCab2.chr6 17812624 2 + 84719076 TT i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=326914.000000 s mm10.chr1_GL456221_random 28610 122 + 206961 ------------------TTCTCCTGAGGTTGCAACCAC-AGCCTCTCATTTGGCATGTGCATA-----GTCTCCCTCCACAG-------------------------CCCAGTCAGTGTTACTTTGCACAGGGCCAGCAGAAGGGCTGGGCATCCTTTGCAGGTCTTCTT s speTri2.JH393335 4094199 146 - 10418462 ------------------TTGTCC-AAGGTTCCTACCAT-GGCCTCTCAGTTGACAGGTGCCCG-----CTCTCCCTTCACAGCCCCCTGGAGCTAAGCCAAGTCAGCCCCGGTCAATGTTACCTTGCCCAGCGCCAGGAGGAGTGCTGGGCATCTCTTGGGAGTCTTCTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231076962 147 + 243199373 ------------------TTTTCCCAGGGTTCCCACCAT-AGCCTCTTGGTTGGCAGACGCATG-----TTCTCCCTTCACAGTCACCTTGAGCTAAGCGGTATCAGCCCCAGTCAGTGTTACCTTGCACAGTGCTAGTGAGGAGGCTGGGCATCTCTTCTGAGTCTTCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235457340 147 + 247518478 ------------------TTTTCCCAGGGTTCCCACCAT-AGCCTCTTGGTTGGCAGATGCATA-----TTCTCCCTTCACAGTCACCTTGAGCTAAGCGGTATCAGCCCCAGTCGGTGTTACCTTGCACAGTGCTAGTGAGGAGGCTGGGCATCTCTTCTGAGTCTTCTT i panTro4.chr2B C 0 I 2027 s gorGor3.chr2B 119409499 147 + 131632457 ------------------TTTTCCCAGGGTTCCCACCAT-AGCCTCTTGGTTGGCAGACGCATG-----TTCTCCCTTCACAGTCACCTTGAGCTAAGCGGTATCAGCCCCAGTCAGTGTTACCTTGCACAGTGCTAGTGAGGAGGCTGGGCATCTCTTCTGAGTCTTCTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3613087 147 + 6458163 ------------------TTCTCCCAGGGTTCCCACCAC-AGCCTCTTGGTTGGCAGATGCATG-----TTCTGCCTTCACGGGCACCTTGAGCTAAGCTGTATCAGCCCCAGTCGGTGTTACCTTGCACAGTGCTAGTGAGGAGGCTCGGCATCTCTTCTGAGTCTTCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009259 147 + 106825570 ------------------TTTTCCCATGGTTCCCACCAT-AGTCTATTGGTTGGCAGATGCATG-----TTCTCCCTTCACAGCCACCCTGAGCTAAGCTGTATCAGCCCCAGTCGGTATTACCTGGCACAGTGCTAGCGAGGAGGCTGGGCATCTCTTCTGAGTCTTCTT i rheMac3.chr12 I 13 C 0 s calJac3.chr6 146683876 152 + 158406734 ------------------TTTTCCCAGGGTTCCCACCGT-AGCCTCTTGGTTGGCAGATATGTGTTCTCTTCTCCCTTCACATCCACCTTGAGCTAAGCTGTATCAGCCCCAGTCAGTGTTACCTTGCACAGTGCTAGCGAGGAGGCTGGGCATCTCTTTTGAGTCTTCTT i calJac3.chr6 C 0 C 0 s equCab2.chr6 17812626 166 + 84719076 TTTATCATACCCGGTTCTTTCTCCCAGGGTTCCTACCACAAGCCTCTAGGTTTGTGGGTGTGTG-----TTTTCCCTTCATGACCACCTCGAGCTAATCTAAGTCAGCCCCAAGCAACATCACCTTGCACAGTGGCAGGGGGAGTGCCAGGCATCTTGTGTGATTCTTCTT i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=894.000000 s mm10.chr1_GL456221_random 28732 2 + 206961 TC- s speTri2.JH393335 4094345 2 - 10418462 CC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231077109 2 + 243199373 CC- i hg19.chr2 C 0 I 2 s gorGor3.chr2B 119409646 2 + 131632457 CC- i gorGor3.chr2B C 0 I 2025 s nomLeu2.GL397366 3613234 2 + 6458163 CC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94009406 2 + 106825570 CC- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146684028 2 + 158406734 CC- i calJac3.chr6 C 0 C 0 s equCab2.chr6 17812792 2 + 84719076 -CA i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e panTro4.chr2B 235457487 2027 + 247518478 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=1365.000000 s mm10.chr1_GL456221_random 28734 1 + 206961 T s speTri2.JH393335 4094347 1 - 10418462 T i speTri2.JH393335 C 0 I 1 s nomLeu2.GL397366 3613236 1 + 6458163 T i nomLeu2.GL397366 C 0 I 2032 s rheMac3.chr12 94009408 1 + 106825570 T i rheMac3.chr12 C 0 I 2014 s calJac3.chr6 146684030 1 + 158406734 T i calJac3.chr6 C 0 I 1993 s equCab2.chr6 17812794 1 + 84719076 T i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e gorGor3.chr2B 119409648 2025 + 131632457 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077111 2 + 243199373 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=-1686.000000 s mm10.chr1_GL456221_random 28735 12 + 206961 -GACCATATCAGt----------------- s speTri2.JH393335 4094349 12 - 10418462 -GGTTATTTCAGG----------------- i speTri2.JH393335 I 1 C 0 s hg19.chr2 231077113 12 + 243199373 -ATTCATTTTGGA----------------- i hg19.chr2 I 2 I 7 s equCab2.chr6 17812795 30 + 84719076 CATTTATGTGGGATGTTAGATTGTCATTGT i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009409 2014 + 106825570 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e gorGor3.chr2B 119409648 2025 + 131632457 I e panTro4.chr2B 235457487 2027 + 247518478 I e calJac3.chr6 146684031 1993 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=2104.000000 s mm10.chr1_GL456221_random 28747 65 + 206961 tctta-----------------gaagggggaacaaaatac---ccagggaaggagttacagagacaaagt-tcagagcagagactg---- s speTri2.JH393335 4094361 76 - 10418462 TGTTAAGTCGTCACTGGCCGCTGAAGAAGGAATAAAAATC---ATAG-------GTTACAGGGACTAGGTGTCAGGGAGGACACTG---- i speTri2.JH393335 C 0 I 2597 s equCab2.chr6 17812825 67 + 84719076 ----------TCATTG------AAGAGAGGAATAAAAATCATTACAG-------GTTACAGGGACAGGGCACCAGGGAGAGGAGTGAATA i equCab2.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009409 2014 + 106825570 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e gorGor3.chr2B 119409648 2025 + 131632457 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077125 7 + 243199373 I e calJac3.chr6 146684031 1993 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=391.000000 s mm10.chr1_GL456221_random 28812 12 + 206961 cc----atacctgggg s equCab2.chr6 17812892 16 + 84719076 CTAAGAATGCCTGGGG i equCab2.chr6 C 0 I 1644 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009409 2014 + 106825570 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e gorGor3.chr2B 119409648 2025 + 131632457 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077125 7 + 243199373 I e calJac3.chr6 146684031 1993 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=0.000000 s mm10.chr1_GL456221_random 28824 538 + 206961 atccattccataaacaaccaccaaacctagacactattgcaaatgccaacaagagcttgctgaaggagcctgatatagctgtctcctgagaggctctgccagtgcctgactaatacagaggtggatgtacacagtcatctattagacggagcacagggtccccaatgaagaagctagagaaagtatctaaggagctgaaggggtttgcagccccataggaggaacaacaacataaattaaccagtagccccagagatccctgggattaaaccaccaatcaaagagtacacatggcgggattcatggctctagctgcatatgtaggagaggattgcctagtggtcatcaatgggaggagaggcccttggtcctatgaaggttctatgccccagtatagggtaatgccaggaccaggaagcaggagtgggtgggttgaggagcagggggaggggggagaggataggggattttcggaggggaaactaggaaaggggataacatttgaaatgtaaataaagaaaatatctaataaaaaaaa e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009409 2014 + 106825570 I e equCab2.chr6 17812908 1644 + 84719076 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e gorGor3.chr2B 119409648 2025 + 131632457 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077125 7 + 243199373 I e calJac3.chr6 146684031 1993 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92337022 1183 + 121549591 M a score=7134.000000 s mm10.chr1_GL456221_random 29362 48 + 206961 TCGTTACTGGCAGCTGAAGGAGGAGGGAAAA--ACCATGGATTGTAGGGA s rn5.chr9 92338222 45 + 121549591 TTGTTACTGGCAGCTGAAGGAGG---GAAAA--CCCACAGGTTGCAGGGA i rn5.chr9 M 1183 C 0 s hg19.chr2 231077132 50 + 243199373 TTGTCATTGGTCACTGAAGGAGGAAAGGAAATTATTACAGATTGCAGGGA i hg19.chr2 I 7 I 1960 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009409 2014 + 106825570 I e equCab2.chr6 17812908 1644 + 84719076 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e gorGor3.chr2B 119409648 2025 + 131632457 I e panTro4.chr2B 235457487 2027 + 247518478 I e calJac3.chr6 146684031 1993 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=357.000000 s mm10.chr1_GL456221_random 29410 10 + 206961 AAAGAGTAAA s rn5.chr9 92338267 10 + 121549591 AGAGGGGGAA i rn5.chr9 C 0 I 2239 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009409 2014 + 106825570 I e equCab2.chr6 17812908 1644 + 84719076 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e gorGor3.chr2B 119409648 2025 + 131632457 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077182 1960 + 243199373 I e calJac3.chr6 146684031 1993 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 29420 1 + 206961 A e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009409 2014 + 106825570 I e equCab2.chr6 17812908 1644 + 84719076 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e gorGor3.chr2B 119409648 2025 + 131632457 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077182 1960 + 243199373 I e calJac3.chr6 146684031 1993 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92338277 2239 + 121549591 I a score=22590.000000 s mm10.chr1_GL456221_random 29421 323 + 206961 TGTGTTTCTTT-TCTATCCAGTTCTGTAGTCTAGATGCCGAATGTCTCCTCaaagcttaggttcccaggtgacactacagggagatgggctgatgtgaagagctgggtccaagaggaggtgttaggtcattgggagcacctctagaggagattgtggggtccaagtctctcctttctccattttcagaacacacggtgaacaattttattttgtcacacat-cctgcggtgataca--atcttgctacaggctcaaaCTGTATCACAGGTCAGAGCCCCCTaacttcttctcattgtaagttcattatcataggcattttgtgacag s rn5.chr9 92340516 327 + 121549591 TGTGTTCCTTTATTTACCCAGTTCTGCAGTCTAGATGCCAAATGTCCCCTCAAAACTTAGGGTCTCAGGTGACACTACAGGGAGACGGGATGACTCGAAGAGCTGGGGCTGAGAGGAGGTGTTAGGTTATTGGGGACATCTCTAGAGGGGATTGTGGGATCCAATCCTCTCCTTTCTCCATTTTTAGAACACACAGTGAACAATTTTACTTGTTTATACATTCCTGCTATGATACACTATATTGCTAAAGGCTCAAAGTGTATGACAGGTCAGAGTCCCCTGactttttctcactgtaagtagattatcataggcattttgtgacag i rn5.chr9 I 2239 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009409 2014 + 106825570 I e equCab2.chr6 17812908 1644 + 84719076 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e gorGor3.chr2B 119409648 2025 + 131632457 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077182 1960 + 243199373 I e calJac3.chr6 146684031 1993 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-204.000000 s mm10.chr1_GL456221_random 29744 8 + 206961 a--tagaaat s rn5.chr9 92340843 10 + 121549591 aaataaaaat i rn5.chr9 C 0 C 0 s calJac3.chr6 146686024 8 + 158406734 --acagacaa i calJac3.chr6 I 1993 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94009409 2014 + 106825570 I e equCab2.chr6 17812908 1644 + 84719076 I e nomLeu2.GL397366 3613237 2032 + 6458163 I e gorGor3.chr2B 119409648 2025 + 131632457 I e panTro4.chr2B 235457487 2027 + 247518478 I e hg19.chr2 231077182 1960 + 243199373 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=8264.000000 s mm10.chr1_GL456221_random 29752 6 + 206961 ctgaca s rn5.chr9 92340853 6 + 121549591 ctgaca i rn5.chr9 C 0 C 0 s panTro4.chr2B 235459514 6 + 247518478 ccaaca i panTro4.chr2B I 2027 C 0 s gorGor3.chr2B 119411673 6 + 131632457 ccaaca i gorGor3.chr2B I 2025 C 0 s nomLeu2.GL397366 3615269 6 + 6458163 ccgaca i nomLeu2.GL397366 I 2032 C 0 s rheMac3.chr12 94011423 6 + 106825570 ccaaca i rheMac3.chr12 I 2014 C 0 s calJac3.chr6 146686032 6 + 158406734 cagaca i calJac3.chr6 C 0 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17812908 1644 + 84719076 I e hg19.chr2 231077182 1960 + 243199373 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=363519.000000 s mm10.chr1_GL456221_random 29758 324 + 206961 AGTGACTGTGG---AGTTACCTCTGAACTTCCCCTTCCTTCTCTGTCAGGAGCAACTTACAATGATGTCACAG----G--TGGTTTTAAGGTCATGTGAAATGATCATATAAAATGTCTGGGACACCCACA--GTCAC-AAAGAGATAGACGTTG-TATCCATTTCACCTCT-CTcttctcctcctccttctcctcttctccttcttcttcctctcctcctcctcctcctcctcgttctctctctcTTCCCCACCCCCCATCTTTCTTTCTTTCATAGCAAGTCCC--------GACATTTCAGTTGCCCTACCTGCTCCCTGGAGATGGTCCCATACTTCATATT s rn5.chr9 92340859 224 + 121549591 AGTGATCGTGG---AGTTACCTCTGAACTTCCCCT-----CTTTGTTAAATGCAGCTAACAATGATGTCACAG----G--TGGTTTTAAGGTCATGTGAAATGATCATACAAAATGTGTGGGGCCCTCACACTGTCAC-AAAGAGATAGATATTG-AATTCACGCCCCCTCC-CCC-------------------------------------------------------------------------------------------------CATATTGGGTTCT--------GACATTTCTGCTGCCTTATGTGTTCCCTGTAGATGCTCCAATAGTTCTTATT i rn5.chr9 C 0 C 0 s hg19.chr2 231079142 272 + 243199373 agtaattttgggaagattacctctgggctttaatttctctgtcagtcaaatggggttaaaaatgacttcaaag----ggttgttttaaagatgatgtgagataatcaaataaagtgtttgcgataag-gca---ccaa-aaaaagatacttattattatCCGTCCACATTCATTTTTTCTTCCTCCCTGGCTCTCCTTGTCCTTCCAC-----------------------------------------------------------------CAGACCTGATCTTTGTAACTTTGCATTTCTGTCACCTTATGCATTCCCTATAGATTTTCCAGTATGCCAAATT i hg19.chr2 I 1960 I 1 s panTro4.chr2B 235459520 275 + 247518478 agtaattttgggaagattacctctgggctttaatttctctgtcagtcaaatggggttaaaaatgacttcaaagggttggttgttttaaagatgataagagataatcaaataaagtgtttgcgataag-gca---ccaa-aaaaagatacttattattatCCGTCCATATTCA-TTTTTCTTCCTCCCTGGCTCTCCTTGTCCTTCCAC-----------------------------------------------------------------CAGACCTGATCTCTCTAACTTTGCATTTCTGTCACCTTATGCCTTCCCTATAGATTGTCCAGTATGCCAAATT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119411679 271 + 131632457 agtaattttgggaagattacctctgggctttaatttctctgtcagtcaaatggggttaaaaatgacttcaaag----ggttgttttaaagatgatatgagataatcaaataaagtgtttgcgataag-gca---ccaa-aaaaagatacttattattatCCGTCCATATTCA-TTTTTCTTCCTCCCTGGCTCTCCTTGTCCTTCCAC-----------------------------------------------------------------CAGACCTGATCTCTGTAACTTTGCATTTCTGTCACCTTATGCATTCCCTATAGATTTTCCAGTATGCCAAATT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615275 271 + 6458163 attaattttgggaaaattacctctgggctttaatttctctgtcagtcaaatggggataaaaatgacttcaaag----ggttgttttaaagatgacatgagataatcaaataaagtgtttgagacaat-gcA---CCAA-AAAAAGATACTTACTATTATCCATCCTTATTCT-TTTTTCTTCCTCCCTGACTCTCCTTTTCCTTCCAC-----------------------------------------------------------------CAGACCTGATCTCTGTAACTTTGCATTTCTATCACCTTATGCATTCCCTATAGATTGTCCAGTATGCCAAATT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94011429 271 + 106825570 agtaattgtgggaaaattacctctgggctttaatttctctgtcagtcaaatggggataaaaatgacttcaaag----ggttgttttaaagatgacatgagataatcaaacaaagtgtttgcgataat-gcA---CCAT-AAAAAGATACTTAGTATTATCCATCCTTACTCA-TTTTTCTTCCTCCCTGACTCTCCTTGTCCTTCCAC-----------------------------------------------------------------TAGACGTGATCTCTGTAACTTTGCATTTCTGTCATTTTATGCATTCCCTATAGATTGTCCAGTGTGCCAAATT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146686038 272 + 158406734 attaaccttgagaaaattacctctgggctttaatttctctattggtaaaatggagacaaaaatgacttcacag----ggttgctttaaaaatgacatgagataatcaaataaagtatttGCGATAAC-GCA---AAAAGAAAAAGATACTTCTTATTATCCATCCTTATTCA-TTTTTCTTCCTCCCTGGTTGACCTTGTCCTTCCAC-----------------------------------------------------------------CAGACCTATTCTCTGTAACTTTGCATTTCTGTAACCTTATTCATTCCCTATAGATTGTCCAGTATGCCAAATT i calJac3.chr6 C 0 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17812908 1644 + 84719076 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=1731.000000 s mm10.chr1_GL456221_random 30082 2 + 206961 TT s rn5.chr9 92341083 2 + 121549591 TT i rn5.chr9 C 0 C 0 s hg19.chr2 231079415 1 + 243199373 -T i hg19.chr2 I 1 C 0 s panTro4.chr2B 235459796 1 + 247518478 -T i panTro4.chr2B I 1 C 0 s nomLeu2.GL397366 3615547 1 + 6458163 -T i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94011700 2 + 106825570 CT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146686310 2 + 158406734 TT i calJac3.chr6 C 0 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17812908 1644 + 84719076 I e gorGor3.chr2B 119411950 0 + 131632457 C e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-4539.000000 s mm10.chr1_GL456221_random 30084 15 + 206961 CAAGATGAGTGTTAT------ s rn5.chr9 92341085 14 + 121549591 CAAGATGGGTGT-gt------ i rn5.chr9 C 0 C 0 s hg19.chr2 231079416 11 + 243199373 ----ATG------ATTTTTTT i hg19.chr2 C 0 C 0 s rheMac3.chr12 94011702 9 + 106825570 ----ATG------ATTTTT-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146686312 2 + 158406734 -------------AT------ i calJac3.chr6 C 0 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17812908 1644 + 84719076 I e nomLeu2.GL397366 3615548 0 + 6458163 C e gorGor3.chr2B 119411950 0 + 131632457 C e panTro4.chr2B 235459797 0 + 247518478 C e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=1725.000000 s mm10.chr1_GL456221_random 30099 28 + 206961 gtgatggcccacttctgtaacaccagca s rn5.chr9 92341099 28 + 121549591 gtaatggctcacttttgttacaccagta i rn5.chr9 C 0 C 0 s rheMac3.chr12 94011711 16 + 106825570 -------TCCAAATTCATAGCAC----- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146686314 28 + 158406734 GTTTTTTTCCAAATTCATAGAACCCACA i calJac3.chr6 C 0 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17812908 1644 + 84719076 I e nomLeu2.GL397366 3615548 0 + 6458163 C e gorGor3.chr2B 119411950 0 + 131632457 C e panTro4.chr2B 235459797 0 + 247518478 C e hg19.chr2 231079427 0 + 243199373 C e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-83.000000 s mm10.chr1_GL456221_random 30127 56 + 206961 ctttgaaagaaggctgaggcagaaggattacattttaggccattctgtactacaac s rn5.chr9 92341127 56 + 121549591 cttggaaaaaaggctgaggtagaatgattatattttaggccaccctgggctacatt i rn5.chr9 C 0 C 0 s rheMac3.chr12 94011727 2 + 106825570 ---------------------------------------------------AC--- i rheMac3.chr12 C 0 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17812908 1644 + 84719076 I e nomLeu2.GL397366 3615548 0 + 6458163 C e gorGor3.chr2B 119411950 0 + 131632457 C e panTro4.chr2B 235459797 0 + 247518478 C e hg19.chr2 231079427 0 + 243199373 C e calJac3.chr6 146686342 0 + 158406734 C e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-902.000000 s mm10.chr1_GL456221_random 30183 13 + 206961 gtgagactctatc s rn5.chr9 92341183 12 + 121549591 ttg-gactctgtt i rn5.chr9 C 0 C 0 s gorGor3.chr2B 119411950 13 + 131632457 GTATGATTTTTTT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94011729 6 + 106825570 GTAAGA------- i rheMac3.chr12 C 0 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17812908 1644 + 84719076 I e nomLeu2.GL397366 3615548 0 + 6458163 C e panTro4.chr2B 235459797 0 + 247518478 C e hg19.chr2 231079427 0 + 243199373 C e calJac3.chr6 146686342 0 + 158406734 C e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-2415.000000 s mm10.chr1_GL456221_random 30196 10 + 206961 acaaCT-------TACA s rn5.chr9 92341195 17 + 121549591 ccaaatgaacaGCTATT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235459797 10 + 247518478 ATGATT-------TTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119411963 7 + 131632457 CCAAAT-------T--- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615548 10 + 6458163 ATGATT-------TTTT i nomLeu2.GL397366 C 0 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94011735 0 + 106825570 C e equCab2.chr6 17812908 1644 + 84719076 I e hg19.chr2 231079427 0 + 243199373 C e calJac3.chr6 146686342 0 + 158406734 C e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=5778.000000 s mm10.chr1_GL456221_random 30206 25 + 206961 CCTG-------GTTCACTGAATAGCTGTATTA s rn5.chr9 92341212 32 + 121549591 CCTGCACTAAAATTCATTGAATAGCTGCATCA i rn5.chr9 C 0 C 0 s hg19.chr2 231079427 21 + 243199373 -------CCAAATTCATAGAACA----CATAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235459807 21 + 247518478 -------CCAAATTCATAGAACA----CGTAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119411970 14 + 131632457 --------------CATAGATCA----CGTAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615558 21 + 6458163 -------CCAAATTCATAGAACA----CGTAA i nomLeu2.GL397366 C 0 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94011735 0 + 106825570 C e equCab2.chr6 17812908 1644 + 84719076 I e calJac3.chr6 146686342 0 + 158406734 C e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=21456.000000 s mm10.chr1_GL456221_random 30231 12 + 206961 AAAACACCTGTG s rn5.chr9 92341244 12 + 121549591 GAAACATCTGTG i rn5.chr9 C 0 C 0 s hg19.chr2 231079448 12 + 243199373 GAAATGTTTATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235459828 12 + 247518478 GAAATGTTTATG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119411984 12 + 131632457 GAAATGTTTATG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615579 12 + 6458163 GAAATGTTTATG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94011735 10 + 106825570 --AATGTTTATG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146686342 12 + 158406734 AAAATGTTTATG i calJac3.chr6 C 0 C 0 e speTri2.JH393335 4094437 2597 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17812908 1644 + 84719076 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=353015.000000 s mm10.chr1_GL456221_random 30243 197 + 206961 TCCTATAGAAATTCGAATCGTGGAAGCTGAGGTCAGAGTCAGCCA-GGATGACGCTTCCAGCAGCTTTTGTGAGCAAGCGTG-GTCTATGCCTTTACACAGGGAAAGC-AGGCATTGGAATGCACAATCCACA---CTGGAAACAAACCCAGGCTTTTACTGTAGCACCACTGCACATGTGACAAGGATCGGAGAAACCACAT s rn5.chr9 92341256 197 + 121549591 TCCTACAGAAATTCACCTTGGGGAAACTGAGGTCAGCGTCAGTCA-GGTCTACCCCTCCAGCAGCTTTTGTGAGCGAGTGTG-ACCTACGCCTTTACACAGGGAAAGC-AGGCACTGGAGTGTATGTTCCACA---CTGGCAACAAACCCAGGCTTTTACTGTGGCAACACTGTGCATGTTGAAAGGATTGGAGAAACCACAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4097034 143 - 10418462 TCCTCTAGAAATTCATCTTAGAG-AGTTGGGGACAGAGGCAAGAA-GGGCTGC-CCTCCAG------------------------CCACGCC------AAAAGGAAGC-CGGGGTTGACA-----------------TGGAAACAAACCTGAAATTTCAGCATAGCAACCCCTCAAGTGCAAAAAGTAT---------CACAT i speTri2.JH393335 I 2597 C 0 s hg19.chr2 231079460 201 + 243199373 TCCTCTAGAAGTTCATCTTAGAG-AGTTGGGATCAGCTTTAGCAAGGGGCTGCTCCTGCAGCTGTACCAATGAGAGAATATG-GTCCATTCCACCCCAGAGAGAAGGCGGGGGATTAACGTGCATATTCCACAGGGCTAGAAGTAAACCCAGACTTTTACCATAGCAACTTTTTAAATGCAAAAAGCACTTGAGAAATCTCAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235459840 201 + 247518478 TCCTCTAGAAGTTCATCTTAGAG-AGTTGGGATCAGCTTTAGCAAGGGGCTGCTCCTGCAGCTGTACCAATGAGAGAATATG-GTCCATTCCTCCCCAGAGAGAAAGCGGGGGATTAACGTGCATATTCCACAGGGCTAGAAGTAAACCCAGACTTTTACCATAGCAACTTTTTAAATGCAAAAAGCACTTGAGAAATCTCAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119411996 201 + 131632457 TCCTCTAGAAGTTCATCTTAGAG-AGTTGGGATCAGCTTTAGCAAGGGGCTGCTCCTGCAGCTGTACCAATGAGAGAATATG-GTCCATTCCTCCCCAGAGAGAAAGCGGGGGATTAACGTGCATATTCCACAGGGCTAGAAGTAAACCCAGACTTTTACCACAGCAACTTTTTAAATGCAAAAAGCACTTGAGAAATCTCAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3615591 201 + 6458163 TCCTCTAGAAATTCATTTTAGAG-AGTTGGGATCAGCTTTAGCAAAGGGCTGCTCCTGCAGCTGTACCAATGAGAGAATATG-GTCCATTCCTCCCCAGAGAGAAAGCGGGGGATTAACATGCATATTCCACAGGGCTAGAAGTAAACCCAGACTTTTACCATAGCAACTTTTTAAATACAAAAAGCAGTTGAGAAATCTCAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94011745 201 + 106825570 TCCTCTAGAAATTCATTTTAGAG-AGCTGGAATCAGCTTTAGCAAGGGGCTGCTCCTGAAGCTGTACCAATGAGAGAATATG-ATCCATTCCTCCCCAGAGAGAAAGTGGGGGATTAATATGCATATTCCACAGGGCTAGAAGTAAACCCCGACTTTTACCATAGCAACTTTTTAAATGCAAAAAGGACTTGAGAAATCTCAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146686354 199 + 158406734 CCCTCTGGAAATTCATCTTAGAG-AGCTGGGGTCAGCTTTAGCAAGGGGCTGCCCCTGCAGCC---CCAATGAAAGAAAATGAGTCCATTCTTTCCTAAAGAGAAAGCCAGAGATTAATGTGGATATTCCACAGGGCTAGAAGTAGACCCAGACTTTTACCATAGCAACTTTTTAAATGCAAAAAGCACTTGAGAAATCTCAT i calJac3.chr6 C 0 C 0 e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17812908 1644 + 84719076 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=632462.000000 s mm10.chr1_GL456221_random 30440 210 + 206961 TACCGTTTCTGAAGCTTCTGAAAATTGCCACCAGGCTGGGGTATTCCCGGAGGTTGACCTTGCTGAACAACGTCAGCAGCACTGACGGGTGGAAAGTCTGCTCCAGACTGGTGAGAATATTGTGCACCACTTTGGACAGAGGGACCAGATTTTGACAGGCTTCCAGAGATTCCTTCAAAGAGTGGAGCAGAGGGTTAGTTTGAATGAGTA s rn5.chr9 92341453 210 + 121549591 TACCATTTCTGAAGCTTCTACAAATTGCCCCCAGACTGGGGTATTCCCGTAGGTTGACTTTGCTGAACAATATCAGCAGCATCGATGGGTCGAAAGTCTGCTCCAGACTGGTGAGAATATTGTGCACCACTTTGGATAGAGGGACCAGATTTTGACAGGCTTCCAGAGATTCCTTCAAAGAGTGGATCAGAGGGTTAGTTTGAATGATTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4097177 210 - 10418462 TACCACTTCTGAAGCTCCCGAAAATCTCCGTCAGATTAGGGTATTCACGCAGGTTAATTTGGCTGAACAATGTCAGCAGAAGTGAAAGGTTAAATGTCTTCTCCAGTTGGGTGAGAGTGTTGTACACCACTCTGGACACAGGGACCAAATTTGTACAGGCCTCCAGCGATTCCTTTAAAACATGGAGGGAAGGATGAGTATGGAGGATTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231079661 208 + 243199373 TACCACGTTTGAAGCTTCTGTAAATCGTCACCAGATTGGGATATTCACGCAGGTTAATTTGACTGAACAATGTCACCAGAAGAGACAGGTTAAAAGTCCTCTCCAGTTGGGTGAGAATGTTGTGCACCACTCTGGATACAGGGATCAAATTTCTACAGGCTTCCAGAGATTCCTATAAAAA-TGGAGTGAAGGTTT-TTATAAATGACTA i hg19.chr2 C 0 I 1 s panTro4.chr2B 235460041 204 + 247518478 TACCACGTTTGAAGCTTCTGTAAATCGTCACCAGATTGGGATATTCACGCAGGTTAATTTGACTGAACAATGTCACCAGAAGAGACAGGTTAAAAGTCCTCTCCAGTTGGGTGAGAATGTTGTGCACCACTCTGGATACAGGGATCAAATTTCTACAGGCTTCCAGAGATTCCTGTAAAA-----AGTGAAGGTTT-TTATAAATGACTA i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119412197 208 + 131632457 TACCACGTTTGAAGCTTCTGTAAATCATCACCAGATTGGGATATTCACGCAGGTTAATTTGACTGAACAATGTCACCAGAAGAGACAGGTTAAAAGTCCTCTCCAGTTGGGTGAGAATGTTGTGCACCACTCTGGATACAGGGATCAAATTTCTACAGGCTTCCAGAGATTCCTTTAAAAA-TGGAGTGAAGGTTT-TTATAAATGACTA i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3615792 208 + 6458163 TACCACGTTTGAAGCTTCTGTAAATCGTCACCAGATTGGGATATTCACGCAGGTTAATTTGACTGAACAATGTCACCAGAAGAGACAGGTTAAAAGTCCTCTCCAGTTGCGTGAGAATGTTGTGCACGACTCTGGATACAGGGACCAAATTTCTACAGGCTTCCAGAGATTCCTTTAAAAA-TGGAGTGAAGGTTT-TTATAAATGACTA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94011946 208 + 106825570 TACCACGTTTGAAGCTTCTGTAAATCGTCACCAGATTGGGATATTCATGCAGGTTAATTTGACTGAACAATGTCACCAGAAGAGACAGGTTAAAAGTCCTCTCCAGTTGGGTGAGAATGTTGTGCACCACTCTGGATACAGGGACCAAATTTCTACAGGCTTCCAGAGATTCCTTAAAAAA-TGGAGTGAAGGTTT-TTATAAATGACTA i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146686553 209 + 158406734 TACCACGTTTGAAGCTTCTGTAAATCGTCACCAGATTGGGATATTCATGCAGGTTAATTGGACTGAACAATGTCACCAGAAGAGACAGGTTAAAAGTCCTCTCCAGTTGGGTGAGAACGTTGTGCACCACTTTGGATACGGGGACCAAATTTCTACAGGCTTCCAGAGATTCCTTAAAAAA-TGGAGTGAAGGTTTATTATCAATGATTA i calJac3.chr6 C 0 I 1 s equCab2.chr6 17814552 209 + 84719076 TACCATTTTTGAAGCTCTCAAGAATTGTCTTCAGTTTGGGGTATTCACACAGGTTAATTCGGCTGAACAACATCTCCAGAAGTGACAGATTAAACGTCTTCTCCAATTTGGTGAGAATGTTGTACACCAGTCTGGATACAGGAACCTGATTGCTATGGGCTTCCAGAGATTCCTTAAAAAA-TGGAATGAAGGATTATTAGAAATGATTA i equCab2.chr6 I 1644 I 1 e turTru2.JH490333 10111 10928 - 53618 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=771.000000 s mm10.chr1_GL456221_random 30650 1 + 206961 G s rn5.chr9 92341663 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4097387 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231079870 1 + 243199373 A i hg19.chr2 I 1 C 0 s panTro4.chr2B 235460246 1 + 247518478 A i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119412406 1 + 131632457 A i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3616001 1 + 6458163 A i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94012155 1 + 106825570 A i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146686763 1 + 158406734 A i calJac3.chr6 I 1 C 0 e turTru2.JH490333 10111 10928 - 53618 I e equCab2.chr6 17814761 1 + 84719076 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=129721.000000 s mm10.chr1_GL456221_random 30651 49 + 206961 -TCACTGAGCGGAGAG---CTCT---CTATCTGTGGTTTTCTATATTGTAAGAAAG s rn5.chr9 92341664 49 + 121549591 -TCATTGAGCTGAGAG---CTCT---ACATTTGTGGTTTTCTGTATCATAAGAAAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4097388 52 - 10418462 -GAACTGAACGGAGAGTCATTAT---ACGTTTGTGGTTTTCTAAGTGACAGGAAAG i speTri2.JH393335 C 0 I 941 s hg19.chr2 231079871 49 + 243199373 -AAATTGAATGGGAAG---TTAT---ACATTTATGGTTTTCTAAGTTTTAAGAAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235460247 49 + 247518478 -AAATTGAATGGGAAG---TTAT---ACATTTATGGTTTTCTAAGTTTTAAGAAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412407 49 + 131632457 -AAATTGAATGGGAAG---TTAT---ACATTTATGGTTTTCTAAGTTTTAAGAAAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616002 49 + 6458163 -AAATTGAATGGGAAG---TTAT---ACATTTATGGTTTTCTAAGTTTTAAGAAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012156 49 + 106825570 -AAATCGAATGGGAAG---TTAT---ACATTTATGATTTTCTAAGTTTTAAGAAAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146686764 49 + 158406734 -AAATTGAATGGGAAG---TTAT---ACATTTGTGATCTTCCCAGTTTTAAGAAAG i calJac3.chr6 C 0 C 0 s equCab2.chr6 17814762 53 + 84719076 AAAATGGAATGGAGGT---TTATTAGACATTTTTGGTTTTCTAAGTTCTAAGAAGG i equCab2.chr6 I 1 C 0 e turTru2.JH490333 10111 10928 - 53618 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=14882.000000 s mm10.chr1_GL456221_random 30700 6 + 206961 TTACTT s rn5.chr9 92341713 6 + 121549591 CTACTT i rn5.chr9 C 0 C 0 s hg19.chr2 231079920 6 + 243199373 CTACCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235460296 6 + 247518478 CTACCT i panTro4.chr2B C 0 I 428 s gorGor3.chr2B 119412456 6 + 131632457 CTACCT i gorGor3.chr2B C 0 I 428 s nomLeu2.GL397366 3616051 6 + 6458163 CTACCT i nomLeu2.GL397366 C 0 I 429 s rheMac3.chr12 94012205 6 + 106825570 CTACCT i rheMac3.chr12 C 0 I 436 s calJac3.chr6 146686813 6 + 158406734 CTACTT i calJac3.chr6 C 0 I 430 s equCab2.chr6 17814815 6 + 84719076 CTGTTT i equCab2.chr6 C 0 I 1133 e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-137.000000 s mm10.chr1_GL456221_random 30706 1 + 206961 G s rn5.chr9 92341719 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231079926 1 + 243199373 T i hg19.chr2 C 0 C 0 e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-1342.000000 s mm10.chr1_GL456221_random 30707 1 + 206961 -g s rn5.chr9 92341720 1 + 121549591 -g i rn5.chr9 C 0 C 0 s hg19.chr2 231079927 1 + 243199373 -A i hg19.chr2 C 0 C 0 s oviAri1.chr2 244287606 1 + 263237078 T- i oviAri1.chr2 N 0 C 0 e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-520.000000 s mm10.chr1_GL456221_random 30708 2 + 206961 gg- s rn5.chr9 92341721 2 + 121549591 gg- i rn5.chr9 C 0 C 0 s oviAri1.chr2 244287607 2 + 263237078 -GC i oviAri1.chr2 C 0 C 0 e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 10111 10928 - 53618 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e hg19.chr2 231079928 0 + 243199373 C e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=3160.000000 s mm10.chr1_GL456221_random 30710 11 + 206961 gctgctgagga s rn5.chr9 92341723 11 + 121549591 gctgctgagga i rn5.chr9 C 0 C 0 s turTru2.JH490333 21039 11 - 53618 TCTCTTAAGAA i turTru2.JH490333 I 10928 C 0 s oviAri1.chr2 244287609 11 + 263237078 TCTCTTAAGGA i oviAri1.chr2 C 0 I 50769 e speTri2.JH393335 4097440 941 - 10418462 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e hg19.chr2 231079928 0 + 243199373 C e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=2244.000000 s mm10.chr1_GL456221_random 30721 134 + 206961 -tggctaagtgggtgcaggcgttggccgtcaagcttgatc---tgagtctgatccc----tgtgatctggagggtggaaggagagcacagattctacagggtgtcattcagc-ctccacctgcacaccatggcacatgcgcac s rn5.chr9 92341734 139 + 121549591 -tggctgagtgggtaaaagtgttggccctcaagtctgatgacacgggtttgaaccctaggtaggatccata-ggtggaaggagagaacagattctacaagctgcccttcaa--cttcacttgcacaccacagcagatgtgtgc i rn5.chr9 C 0 C 0 s turTru2.JH490333 21050 100 - 53618 GGAATTTAGTG---CAAAATGTCAATAGTAAAATTC------------------------TCTGACATAGA---------GAAATCACAG-TTCCACAGGTTTACTTTTGGAGCTTCATATATATA------TGGATGGTCAC i turTru2.JH490333 C 0 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e hg19.chr2 231079928 0 + 243199373 C e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=1262.000000 s mm10.chr1_GL456221_random 30855 33 + 206961 CTCGCTCCCAAATAAATA-----CAGTA--CTTAAAAAT-A s rn5.chr9 92341873 39 + 121549591 ctcacacccaAATAAATAAATTGTAGTA--CTTTAAAATAA i rn5.chr9 C 0 C 0 s hg19.chr2 231079928 30 + 243199373 CTCTTTTAAGAAGAAATT-----CAACA-----TAAAAT-A i hg19.chr2 C 0 C 0 s turTru2.JH490333 21150 24 - 53618 -----------AGGAATT-----CAGCATTCTTGAAAAT-A i turTru2.JH490333 C 0 I 243 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=1092.000000 s mm10.chr1_GL456221_random 30888 4 + 206961 TATA s rn5.chr9 92341912 4 + 121549591 TATA i rn5.chr9 C 0 C 0 s hg19.chr2 231079958 4 + 243199373 TATA i hg19.chr2 C 0 I 1339 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21174 243 - 53618 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=273.000000 s mm10.chr1_GL456221_random 30892 3 + 206961 AAa s rn5.chr9 92341916 3 + 121549591 AAa i rn5.chr9 C 0 I 138 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21174 243 - 53618 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 30895 21 + 206961 gtcaggcttggtgacacactc e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21174 243 - 53618 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 17801 3573 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92341919 138 + 121549591 I a score=89.000000 s mm10.chr1_GL456221_random 30916 5 + 206961 cttta s papHam1.scaffold15394 21374 5 - 58077 TTCTG i papHam1.scaffold15394 I 3573 I 270 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21174 243 - 53618 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146686819 430 + 158406734 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92341919 138 + 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 30921 114 + 206961 attccagcattcaggagacaggcagtcagattgctaatgttttctagttgagggcatcctgatctaccaagtgagttccaggacagccagggctgcacagagaaatcttgtctc e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21174 243 - 53618 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 21379 270 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92341919 138 + 121549591 I a score=3418.000000 s mm10.chr1_GL456221_random 31035 48 + 206961 AaacagaacagaacagaacaaaacCCCCAAATTTAAGAAATCTTCTTT s rn5.chr9 92342057 48 + 121549591 aaacaaaacaaagcaaaacaaaacTGCCAAATTTAAGAAATATTCTTT i rn5.chr9 I 138 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21174 243 - 53618 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 21379 270 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-800.000000 s mm10.chr1_GL456221_random 31083 2 + 206961 -TT s rn5.chr9 92342105 2 + 121549591 -TT i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_28366 11424 2 + 22953 AC- i tarSyr1.scaffold_28366 N 0 I 5614 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21174 243 - 53618 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 21379 270 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=2528.000000 s mm10.chr1_GL456221_random 31085 44 + 206961 T-AATTTAAGAGGAATTTTAGTATAAAATATAGAGTTAAATCTTT s rn5.chr9 92342107 43 + 121549591 TTAATTTAAGAGGAAATTTAGTATAAAATGT--AGTTAAATCTTC i rn5.chr9 C 0 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21174 243 - 53618 I e rheMac3.chr12 94012211 436 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3616057 429 + 6458163 I e gorGor3.chr2B 119412462 428 + 131632457 I e panTro4.chr2B 235460302 428 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146686819 430 + 158406734 I e papHam1.scaffold15394 21379 270 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=10696.000000 s mm10.chr1_GL456221_random 31129 4 + 206961 AGGA s rn5.chr9 92342150 4 + 121549591 AGGA i rn5.chr9 C 0 C 0 s panTro4.chr2B 235460730 4 + 247518478 AGGA i panTro4.chr2B I 428 C 0 s gorGor3.chr2B 119412890 4 + 131632457 AGGA i gorGor3.chr2B I 428 C 0 s nomLeu2.GL397366 3616486 4 + 6458163 AGGA i nomLeu2.GL397366 I 429 C 0 s rheMac3.chr12 94012647 4 + 106825570 AGGA i rheMac3.chr12 I 436 C 0 s papHam1.scaffold15394 21649 4 - 58077 AGGA i papHam1.scaffold15394 I 270 C 0 s calJac3.chr6 146687249 4 + 158406734 AGGA i calJac3.chr6 I 430 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21174 243 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231079962 1339 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=2552.000000 s mm10.chr1_GL456221_random 31133 1 + 206961 A s rn5.chr9 92342154 1 + 121549591 G i rn5.chr9 C 0 C 0 s panTro4.chr2B 235460734 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412894 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616490 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012651 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 21653 1 - 58077 G i papHam1.scaffold15394 C 0 C 0 s calJac3.chr6 146687253 1 + 158406734 G i calJac3.chr6 C 0 C 0 s turTru2.JH490333 21417 1 - 53618 G i turTru2.JH490333 I 243 I 3242 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231079962 1339 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=2548.000000 s mm10.chr1_GL456221_random 31134 1 + 206961 A s rn5.chr9 92342155 1 + 121549591 A i rn5.chr9 C 0 I 1772 s panTro4.chr2B 235460735 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412895 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616491 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012652 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 21654 1 - 58077 A i papHam1.scaffold15394 C 0 C 0 s calJac3.chr6 146687254 1 + 158406734 A i calJac3.chr6 C 0 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231079962 1339 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=1179.000000 s mm10.chr1_GL456221_random 31135 1 + 206961 G s panTro4.chr2B 235460736 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412896 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616492 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012653 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 21655 1 - 58077 A i papHam1.scaffold15394 C 0 C 0 s calJac3.chr6 146687255 1 + 158406734 A i calJac3.chr6 C 0 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231079962 1339 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=2548.000000 s mm10.chr1_GL456221_random 31136 1 + 206961 A s panTro4.chr2B 235460737 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412897 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616493 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012654 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 21656 1 - 58077 A i papHam1.scaffold15394 C 0 I 3328 s calJac3.chr6 146687256 1 + 158406734 A i calJac3.chr6 C 0 C 0 s myoLuc2.GL429770 26004171 1 + 30916457 A i myoLuc2.GL429770 N 0 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231079962 1339 + 243199373 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=1862.000000 s mm10.chr1_GL456221_random 31137 5 + 206961 AGTCA s panTro4.chr2B 235460738 2 + 247518478 ---TA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412898 2 + 131632457 ---TA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616494 2 + 6458163 ---TA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012655 2 + 106825570 ---TA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146687257 2 + 158406734 ---TA i calJac3.chr6 C 0 C 0 s myoLuc2.GL429770 26004172 5 + 30916457 AATCA i myoLuc2.GL429770 C 0 I 19404 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231079962 1339 + 243199373 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=21555.000000 s mm10.chr1_GL456221_random 31142 20 + 206961 TTGAAAGAGAGAACTGGCTG s panTro4.chr2B 235460740 20 + 247518478 TGGCAAGAGAGAACTGATTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119412900 20 + 131632457 TGGCAAGAGAGAACTGATCG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616496 20 + 6458163 TGGCAAGATGGAACTGATTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94012657 20 + 106825570 TGGCAAGAGAGAACTGATTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146687259 20 + 158406734 TGGCAAAAGAGAATTGATTG i calJac3.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231079962 1339 + 243199373 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=47053.000000 s mm10.chr1_GL456221_random 31162 54 + 206961 CAAA-ATTCTTCCAGTGTCTGCTATTCCTGGTTAGCTAGTCCTTGGGTGCCCAGA s panTro4.chr2B 235460760 55 + 247518478 caaataattattgaacatctactaggctcggtcagcgagtctttgggtacacagc i panTro4.chr2B C 0 I 33 s gorGor3.chr2B 119412920 55 + 131632457 caaataattattgaacatctactaggctcggtcagcgagtctttgggtacacagc i gorGor3.chr2B C 0 I 33 s nomLeu2.GL397366 3616516 55 + 6458163 caaatacttattgaatatctgctaggcttggtcagtgagtctttgggtacacagc i nomLeu2.GL397366 C 0 I 54 s rheMac3.chr12 94012677 55 + 106825570 caaatacttattgaacatctactaggctcagtcagcaagtctttgggtacacagc i rheMac3.chr12 C 0 I 43 s calJac3.chr6 146687279 55 + 158406734 caaatgttcactgaatacctactatgctcagccagcaagtctttagatacacagc i calJac3.chr6 C 0 I 54 s taeGut1.chr26_random 1241200 50 + 1627540 CAAA-GCTCTCCAGAGGGAAGTTGTGCCCGG-CAGTGAGGGC---GGTGCCCACG i taeGut1.chr26_random N 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231079962 1339 + 243199373 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=4194.000000 s mm10.chr1_GL456221_random 31216 119 + 206961 TGGATCCGGTGATGGGACAGGTGATACCCTCCCCAGGTGGAGCCCTGTTCAGGCGGTGTTGCTGTCCAGGTGGGACCTTGCCCAGGTGGGGCCCTGCCCAGGTGGGAGTACTGCCCAGG s taeGut1.chr26_random 1241250 112 + 1627540 -----CCGAGGACCTGCCCGGTGAGTCACTGCCCAGGTGAGCCACTGCCCAGGTGA-GTCACAGCCTAGGTGAGACACTGCCTAGGTGAGACACTGCCTAGGTGAGA-CACTGCCTAGG i taeGut1.chr26_random C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94012732 43 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3616571 54 + 6458163 I e gorGor3.chr2B 119412975 33 + 131632457 I e panTro4.chr2B 235460815 33 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146687334 54 + 158406734 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=950.000000 s mm10.chr1_GL456221_random 31335 15 + 206961 TGGGAGTACTGCCCA s panTro4.chr2B 235460848 9 + 247518478 tgggggt------ca i panTro4.chr2B I 33 I 1 s gorGor3.chr2B 119413008 9 + 131632457 tgggggt------ca i gorGor3.chr2B I 33 I 1 s taeGut1.chr26_random 1241362 14 + 1627540 -TGAGACACTGCCCA i taeGut1.chr26_random C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94012732 43 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3616571 54 + 6458163 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146687334 54 + 158406734 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=1501.000000 s mm10.chr1_GL456221_random 31350 13 + 206961 GGT-AGGGTCCTGC- s panTro4.chr2B 235460858 11 + 247518478 ggt-aggcactg--- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119413018 11 + 131632457 ggt-aggcactg--- i gorGor3.chr2B I 1 C 0 s rheMac3.chr12 94012775 11 + 106825570 ggt-aggcaccg--- i rheMac3.chr12 I 43 C 0 s taeGut1.chr26_random 1241376 13 + 1627540 GGTGAGACACTG--C i taeGut1.chr26_random C 0 I 167 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3616571 54 + 6458163 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146687334 54 + 158406734 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=192417.000000 s mm10.chr1_GL456221_random 31363 189 + 206961 TCCAGTGGAGGAGGAGGGCATC-CATCCCTGAAAAGACAGTCAGTAAATAGCCAGTTGCAACTGAGAACAGTCTCAT-AAAGGAAAGCAC-GGTTGT--TGGAA--GGAAAAC--GTGAGTCTCAGTGAG-TGAGTGGG---------------------------------CTGTGGACTGATGAAGGAGCTGGAGCT-----GTGTCAGACTTGGAAAAGGCTGTTGCAATTTTC s panTro4.chr2B 235460869 227 + 247518478 tcaagtggagaagatgagcatt-aat------aaacaca---aataaatacccatttacaattgagagtagtgttacggagggaaagcatagattgctatggaactgaataactaaggggtcttcatgagatgagttggccaaggagatgtctctgaggagtgctctctgggccgtgatctgaagagggagttggggccaaccagactaagactaagggaagattattggcaCTTCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119413029 227 + 131632457 tcaagtggagaagatgagcatt-aat------aaacaca---aataaatacccatttacaattgagagtagtgttacggagggaaagcatagattgctatggaactgaataactaaggggtcttcatgagatgagttggccaaggagatgtctctgaggagtgctctctgggctgtgatctgaagagggagttggggccaaccagactaagactaagggaagattattggcaCTTCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3616625 227 + 6458163 TCAGGTGGAGAAGATGAGCATT-AAT------AAACACA---AATAAGTACCCATTTAAAGTTGAGAGTAGTGTTATGGAGGGAAAGCATAGATTGCTATGGAACTGAATAACTAAGGGGTCTTAATGAGATGAGTGGGCCAAGGAGATGTCTCTGAGGAGTGCTCTCTGGACTGTGATCTGAAGACGGCGTTGGGGCCAACCAGACTAAGACTAGGGGAAGATTGTTGGCACTTCC i nomLeu2.GL397366 I 54 C 0 s rheMac3.chr12 94012786 222 + 106825570 tcaggtggagaagatgggcatt-aat------aaacaca---aa----tacccatttacaattgagagtagtgttatggagggaaatcatagattgctatggaactgaataactaagaggtcttaatgagatgagtgggccaaggagatatctctgaggggcgatctctgggctgtgatctgaagaggaagttggggccaaccagactgagacta-gggaagaTTGCTGGCACTTCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146687388 227 + 158406734 tcaggtggagaagatgggcattaaat------aaacata---aataaATACCCATTTACAATTGAGAGTAGTGTTATGGAGGGAAAGCATAGATTGTGATGGAACTGAGTAACTAAGGGGTCTTAATGAGATGAGTGGGTCAAGGAGACGTCTCTGAGGAGTACTATCTCATCTGTGATCTGAAGAGGGAGATGGGTCCAG-CAGGCTAAGACTAAGGGAAGATGGCTGGCACTTTC i calJac3.chr6 I 54 I 154 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231079962 1339 + 243199373 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=-2551.000000 s mm10.chr1_GL456221_random 31552 2 + 206961 TT------------- s panTro4.chr2B 235461096 2 + 247518478 TT------------- i panTro4.chr2B C 0 I 385 s gorGor3.chr2B 119413256 2 + 131632457 TT------------- i gorGor3.chr2B C 0 I 382 s nomLeu2.GL397366 3616852 2 + 6458163 CT------------- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94013008 15 + 106825570 CCGAGTCTAGGGCTC i rheMac3.chr12 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146687615 154 + 158406734 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=196.000000 s mm10.chr1_GL456221_random 31554 8 + 206961 tgtagagg s nomLeu2.GL397366 3616855 8 + 6458163 AGTCTAGG i nomLeu2.GL397366 I 1 I 364 s rheMac3.chr12 94013023 8 + 106825570 AATAAATG i rheMac3.chr12 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e gorGor3.chr2B 119413258 382 + 131632457 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146687615 154 + 158406734 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=-1765.000000 s mm10.chr1_GL456221_random 31562 125 + 206961 aattttaa-----------tccagcaacagggctgctttggcaagtgatca----------------------tcatatccaaagaccttct------------------------------aggtctgt-gtgatctggctgg---aatacagacacacctctaatcccaggagtcagaggcaagcagatc s rheMac3.chr12 94013031 189 + 106825570 CTTTTAAAAACCAAAATTGTATAAAAATAGGTCCACTTTGTCCACATAGCATATCTTCCAGTGCCTGCCTGTCTCACATCAGAATGCACTGTGAGCAATATAAGCTGTTATAAATTGGAATGATGCCTGTAGTGAGTTGAATTGCCTAATTCAACTAATTCACTAATGCCTGTAGTGAGATGCCTGTAG--- i rheMac3.chr12 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3616863 364 + 6458163 I e gorGor3.chr2B 119413258 382 + 131632457 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e calJac3.chr6 146687615 154 + 158406734 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=5089.000000 s mm10.chr1_GL456221_random 31687 108 + 206961 tctgagttgaagg----ccagcttgggacagagaaagtt-------gcttgtaaagaaaagcttaggtcca------ggcttggcagt--------acttgctttattc-ctagcactcaggagacagagtcat------ s rheMac3.chr12 94013220 131 + 106825570 --TGAATTGAATGGTGCCCCTCTCAGCCAAGATATAGCCATccagaacctgtgaatgcgaacttacttggaaaaagtgtctttgcagttgtaatttttgagatattttcatctttgat-ttgagataaaatcat------ i rheMac3.chr12 C 0 I 90 s calJac3.chr6 146687769 139 + 158406734 tgtgagttgaatggtgcccgcctcggccaagatatatggatctagaacctgtgaatgtgaacttatctggaaaaagtgtctttgcagttgtaattaaccggattttgtc-tcaaggatcttgagacaaaatcatcttcat i calJac3.chr6 I 154 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3616863 364 + 6458163 I e gorGor3.chr2B 119413258 382 + 131632457 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=-684.000000 s mm10.chr1_GL456221_random 31795 71 + 206961 tcaggt---ctctgagttcag------tcaatcagTTGagtgcagtgc----agtggagctgagtcagggagttggggtcag--tg s calJac3.chr6 146687908 84 + 158406734 tcagggtgaccctaaatccaagtgtcctcaggagattaggtagaagactcaaaagagaggtgatgtagaga--tggacacagatta i calJac3.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94013351 90 + 106825570 I e equCab2.chr6 17814821 1133 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3616863 364 + 6458163 I e gorGor3.chr2B 119413258 382 + 131632457 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=1146.000000 s mm10.chr1_GL456221_random 31866 4 + 206961 cagt s calJac3.chr6 146687992 4 + 158406734 cagt i calJac3.chr6 C 0 C 0 s equCab2.chr6 17815954 4 + 84719076 cagt i equCab2.chr6 I 1133 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94013351 90 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3616863 364 + 6458163 I e gorGor3.chr2B 119413258 382 + 131632457 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=-1671.000000 s mm10.chr1_GL456221_random 31870 12 + 206961 gagtgcagtgca-- s rheMac3.chr12 94013441 10 + 106825570 --gagtgatgtg-- i rheMac3.chr12 I 90 I 1 s calJac3.chr6 146687996 6 + 158406734 ------gatgca-- i calJac3.chr6 C 0 I 4 s equCab2.chr6 17815958 12 + 84719076 --gactgaagtgat i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3616863 364 + 6458163 I e gorGor3.chr2B 119413258 382 + 131632457 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92342156 1772 + 121549591 I a score=2536.000000 s mm10.chr1_GL456221_random 31882 4 + 206961 gACT s rn5.chr9 92343928 4 + 121549591 gact i rn5.chr9 I 1772 C 0 s nomLeu2.GL397366 3617227 4 + 6458163 gtct i nomLeu2.GL397366 I 364 C 0 s rheMac3.chr12 94013452 2 + 106825570 --ct i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146688006 4 + 158406734 gtct i calJac3.chr6 I 4 C 0 s equCab2.chr6 17815970 4 + 84719076 gttt i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e gorGor3.chr2B 119413258 382 + 131632457 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-5873.000000 s mm10.chr1_GL456221_random 31886 6 + 206961 --ATTAAT--- s rn5.chr9 92343932 6 + 121549591 --attagt--- i rn5.chr9 C 0 C 0 s gorGor3.chr2B 119413640 2 + 131632457 --ac------- i gorGor3.chr2B I 382 I 1 s nomLeu2.GL397366 3617231 2 + 6458163 --ac------- i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94013454 2 + 106825570 --ac------- i rheMac3.chr12 C 0 I 4 s calJac3.chr6 146688010 2 + 158406734 --at------- i calJac3.chr6 C 0 I 4 s equCab2.chr6 17815974 7 + 84719076 ctat----aag i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e panTro4.chr2B 235461098 385 + 247518478 I e hg19.chr2 231079962 1339 + 243199373 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=86296.000000 s mm10.chr1_GL456221_random 31892 68 + 206961 CTAAGAACTCCAAGAGCTTCCAG---CCACCAGAAGCTA-AACAGAGGCAAGAAACAGATCCA-TCTTTGAAC s rn5.chr9 92343938 71 + 121549591 ctaagaactccaggagctttcaggagccaccagaagcta-aacagaggcaagaaacatatcca-tctctGAAC i rn5.chr9 C 0 C 0 s panTro4.chr2B 235461483 63 + 247518478 ---------ctaaggatttccaacagccaccagaagctaggagataggcagctatcggattct-cctcagggc i panTro4.chr2B I 385 I 118 s gorGor3.chr2B 119413643 63 + 131632457 ---------ctaaggatttccaacagccaccagaagctaggagataggcaggtatcggattct-cctcagggc i gorGor3.chr2B I 1 I 118 s nomLeu2.GL397366 3617237 72 + 6458163 caaggaacaccaaggatttccaacagccaccagaagctaggagataggcagggatcggattct-cctcagggc i nomLeu2.GL397366 I 4 I 118 s rheMac3.chr12 94013460 72 + 106825570 caaggaacaccaaggatttccagcagccaccagaagctaggagataggcagggatcggattct-ccttagggc i rheMac3.chr12 I 4 I 103 s calJac3.chr6 146688016 71 + 158406734 caaggaacaccagggattttcagcagccaccagaagctaggggatagg-agggatcaaattct-cctcaagac i calJac3.chr6 I 4 I 108 s equCab2.chr6 17815981 71 + 84719076 ccaaggataccaaggattgccagca-ccagtaggaggtagggaaaagtcagggaattgattctccctcagag- i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231079962 1339 + 243199373 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=13607.000000 s mm10.chr1_GL456221_random 31960 36 + 206961 ------------------------------------------TT---------ACAGCA-CCTACAATATACCCTAT-CACTAATACAG s rn5.chr9 92344009 36 + 121549591 ------------------------------------------CT---------CTAGCA-CCTACAATATACCCTGT-CCCTAACACAG i rn5.chr9 C 0 C 0 s hg19.chr2 231081301 26 + 243199373 ------------------------------------------tT---------ATGACACCCTAGAA------------ACCAACATAG i hg19.chr2 I 1339 I 1 s panTro4.chr2B 235461664 26 + 247518478 ------------------------------------------tT---------ATGACAGCCTAGAA------------ACCAACATAG i panTro4.chr2B I 118 I 1 s gorGor3.chr2B 119413824 26 + 131632457 ------------------------------------------tT---------ATGACACCCTAGAA------------ACCAATATAG i gorGor3.chr2B I 118 I 1 s nomLeu2.GL397366 3617427 26 + 6458163 ------------------------------------------tT---------ATGACACCCTAGAA------------ACCAATATAG i nomLeu2.GL397366 I 118 I 1 s rheMac3.chr12 94013635 35 + 106825570 ------------------------------------------ttgttacatcaatgacaccctagaa------------accaatacaG i rheMac3.chr12 I 103 I 1 s calJac3.chr6 146688195 26 + 158406734 ------------------------------------------tt---------atgacacactagaa------------accaatataG i calJac3.chr6 I 108 I 1 s equCab2.chr6 17816052 73 + 84719076 tttctagaagtaatcaaccttaccaacactttgattttggactt---------ttggcc-cccagaa------ctgtgagagaatacat i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4097440 941 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=947754.000000 s mm10.chr1_GL456221_random 31996 343 + 206961 CCT-------CAAGACACC----CTTTCTCCCAACC----TCCCTTCCTGCAATAATGATCATGGTCAA-------GTTGGGCCTTCCATGTTCTAGAAACCCTGATGGGTTGTGGTCAGAGATCTCAATACTGAAACATACTTAATGAGGACTAGACAGCTTTGT--GGAGGGTCCACAG-CCTCACCTTGTACATTCTCTCAGTGATGAAGGATTTGTCCCGGAGCGCTTCGAAGAAGGGGAATGGCTTGTTGATGGCATAGGTGATGTTCACCTTCATGTATATGAAATGCTGGAGAAGAGCCTTTTCCAAGGCTTTGGTCAGAGTGAACATCCTATAAAAAGAGGCAGGCTGAGAAGAC--AGGCA s rn5.chr9 92344045 346 + 121549591 CCC-------CAAGACACC----CTTTCTCCCAACCA---TCTCTTTCTGCAATAATGATCATGGTCAA--------TTGGGCCTTCCATGTTCTAGGAGCCCTGGTGGGTTGTGGTCAGAGATCTCAATACTGGAACACATGTAATGAGGACTGGGCTGCTTTGT--GGAGGGCCCACAGGCCTCACCTTGTACATTCGCTCAGTGATGAAGGAATTGTCTCGGAGTGCTTCAAAGAAGGGGAACGGCTTGTTGATGGCATAGGCGATGTCCAGCTTCGTGTATATGAAATGCTGAAGAAGAGCCTTTTCCAAGGCCTTGGTCAGGGTGAACATCCTATAAAAAGAGGCAGGCTGAGAAAACAGAGGCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4098381 339 - 10418462 CCC-------CAGGACACC----CTGTCTTCCAACC----GCGCATCCTGC------GATCAGGTACGACGTGTTTGCTGGGCCTCCCACACCCCAGAGGCCCTGGTGGTTGGTGGTGTGAGATCT--GTTACAGGGTACACTCGGTGGGGGCTGGGCTGCCAAGG--GGAAGGTCCACACCACTCACCTTGTACATTTTCTCAGTGATGAAGGACTTGTCTCGGAGGCCTTCAAAGAAGGGAAATGGCTTTTGTATGGCATAGGAAATCTCCAGTTTCCGGCATATGAAATGCTGAAGAAGAGCCTTTTCCATGGC-----TCACAGTGATCACCCTATGGAGAGAGGCAGAATGAGAAAAC-GGGGGA i speTri2.JH393335 I 941 C 0 s hg19.chr2 231081328 348 + 243199373 CCC-------TATGACACC----CTCTCTCCTAACTACCCCCACCTTCTGTGATAATGAACATGCCTGG-------GCTGGGCCTTCCAAACTCTGGAAGCCCTGGTGGTTTGTGGTTTGAGACTTTAATAATCAGGCATA-TTGGTGGGGGCTGGGCTGCCATGG--AAGGGTTCAACATGACTCACCATGTACATTCTCTTAGTGATGATGGAGTTGTCTAGGAGGCCTTCAAAGAAGGGAAATGGCTTGTGTATGGCATAGGCGATCCCCAGCTTCTGGTGCATGAAGTGCTGAAAAAGAGCCTCTTCCATGGCTCTTGTCATGGTGAACATCCTATGGAAAGAGGCATGATAAAAAATA-GAAGCA i hg19.chr2 I 1 I 311 s panTro4.chr2B 235461691 348 + 247518478 CCC-------TATGACACC----CTCTCTCCTAACCACCCCCACCTTCTGTGATAATGAACATGCCTGG-------GCTGGGCCTTCCAAACTCTGGAAGCCCTGGTGGTTTGTGGTTTGAGACTTTAATAATCAGGCATA-TTGGTGGGGGCTGGGCTGCCATGG--AAGGGTTCAACGTGACTCACCAGGTACATTCTCTTAGTGATGATGGAGTTGTCTAGGAGGCCTTCAAAGAAGGGAAATGGCTTGTGTATGGCATAGGCGATCCCCAGCTTCTGGTGCATGAAGTGCTGAAAAAGAGCCTGTTCCATGGCTCTTGTCATGGTGAACATCCTATGGAAAGAGGCATGATAAAAAATA-GAAGCA i panTro4.chr2B I 1 I 125 s gorGor3.chr2B 119413851 348 + 131632457 CCC-------TATGACACC----CTCTCTCCTAACCACCCCCACCTTCTGTGATAATGAACATGCCTGG-------GCTGGGCCTTCCAAACTCTGGAAGCCCTGGTGGTTTGTGGTTTGAGACTTTACTAATCAGGCATA-TTGGTGGGGGCTGGGCTGCCATGG--AAGGGTTCAACATGACTCACCATGTACATTCTCTTAGTGATGATGGAGTTGTCTAGGAGGCCTTCAAAGAAGGGAAATGGCTTGTGTATGGCATAGGCGATCCCCAGCTTCTGGTGCATGAAGTGCTGAAAAAGAGCCTCTTCCATGGCTCTTGTCATGGTGAACATCCTATGGAAAGAGGCATGATAAAAAATA-GAAGCA i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3617454 349 + 6458163 CCC-------TATGACACC----CTCTCTCCTAACCATCCCCACCTTCTGTGATGATGAACATGCCTGG-------GCTGGGCCTTCCAAACTCTGGAAGCCGTGGTGGTTTGTGGTTCGAGACCTTACTAATCAGGCATACTTAGTGGGGGCTGAGTTGCCATGG--AAGGGTTCAACATGACTCACCATGTACATTCTGTTAGTGATGATGGAGTTGTCTAGGAGGCTTTCAAAGAAGGGAAATGGCTTGTGTATGGCATAGGCGATCCCCAGCTTCTGGTGCATGAAGTGCTGAAAAAGAGCCTCTTCCATGGCTCTTGTCATGGTGAACATCCTATGGAAAGAGGCGTGATACAAAATA-GAAGCA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94013671 349 + 106825570 CCC-------TATGACACC----CTCTCTCCTAACCGCCCCCACCTTCTGTGATAATGAACACACCCGG-------GCTGGGCCTTCCAAACTCTGGAAGCCCTGGTGGTTTGTGGTTTGAGATCTTAATAATCAGGCATATTTGGTGGGGGCTGGGCTGCCATGG--AAGGGTTCAACATGACTCACCATGTACATTGTCTTAGTGATGATGGAGTTGTCTAGGAGTCCTTCAAAGAAGGGAAATGGCTTGTGTATGGCATAGGCGATCCCCAGCTTCTGGTGCATGAAGTGCTGAAAAAGAGCCTCTTCCATGGCTCTTGTCATGGTGAACATCCTATGGAAAGAGGCATGATAAAAAATA-GAAGCA i rheMac3.chr12 I 1 I 130 s calJac3.chr6 146688222 353 + 158406734 CCC-------TAAGACACCCTCTCTCTCTCCTAATCACCCCCACCTTCTGAGATAATGAACATGGCCAG-------GCTAGGCCTTCCAAACTCTAGAGGCCCCGGTGGTTTGTGGTTTGAGACCTCAATAATTGGGTGTACTTGGTGGGGGCTGGGCTCCCATGG--AAGGGTCCAACAGGACTCACCATGTACATTCTCTGAGTGATGAAGGAGTTGTCTAGGAGGCCTTCAAAGAAGGGAAATGGCTTGTGTATGGCATAGGCGATCCTCAGCTTCTGGTACATGAAGTGCTGAAAAAGAGCCTCTTCCATGGCTCTTGTCATGGTGAACATCCTATGGAAAAAGGCATGATAAAAAATA-GAAGCA i calJac3.chr6 I 1 C 0 s equCab2.chr6 17816125 347 + 84719076 ctctttggattaagccacc----tggttt--gAGCCAT--CCTCTTTCTCTGATAATAAACAT-TTTGG-------GCTGGGCCTTCCAAACTCTAAAAGCCCTGG-GGTTTGT-----GAGACTTCCATAACTGGGCATTCTTGATGGGAGCTAGGCCGCCGTGGCAAAGCGATCAGCATGACTCACCCTGTACATTCTCTCGGTGATGAAGGAGCTGTCTCGGAGGCCTTCGAAGAAGGGAAATGCCTTATCTATGGCATAAGAAATCTGCAGCTTCTGACATATGAAGTGCTGGAGGAGAGCCTCTTCTAAGGCCCTGGTCATGGTGAACATCCTATGGA-AGAGGCGTGAGAAGAAAAAGGAAGCA i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=6711.000000 s mm10.chr1_GL456221_random 32339 6 + 206961 AAAGTT s rn5.chr9 92344391 6 + 121549591 GAAGGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4098720 6 - 10418462 AAACCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231081987 5 + 243199373 AAAAC- i hg19.chr2 I 311 C 0 s panTro4.chr2B 235462164 6 + 247518478 aaaatt i panTro4.chr2B I 125 I 37 s gorGor3.chr2B 119414199 6 + 131632457 AAggct i gorGor3.chr2B C 0 I 168 s nomLeu2.GL397366 3617803 6 + 6458163 AAggct i nomLeu2.GL397366 C 0 I 253 s rheMac3.chr12 94014150 6 + 106825570 aaaatt i rheMac3.chr12 I 130 I 37 s calJac3.chr6 146688575 6 + 158406734 AAggcc i calJac3.chr6 C 0 C 0 s equCab2.chr6 17816472 6 + 84719076 AAGACT i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=5253.000000 s mm10.chr1_GL456221_random 32345 12 + 206961 CTCAGGAGGAT-G s rn5.chr9 92344397 13 + 121549591 ATCAGGAGCATGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4098726 12 - 10418462 CCCAGGCGTGC-G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231081992 8 + 243199373 CTTGAGG-----A i hg19.chr2 C 0 I 4 s panTro4.chr2B 235462207 12 + 247518478 cttgggaggct-g i panTro4.chr2B I 37 I 4 s gorGor3.chr2B 119414373 12 + 131632457 cttgggaggct-g i gorGor3.chr2B I 168 I 4 s rheMac3.chr12 94014193 12 + 106825570 cttgggaggct-g i rheMac3.chr12 I 37 I 145 s equCab2.chr6 17816478 12 + 84719076 CTGAGGAGCTT-G i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3617809 253 + 6458163 I e calJac3.chr6 146688581 0 + 158406734 C e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=4312.000000 s mm10.chr1_GL456221_random 32357 8 + 206961 GGGAGTGG s rn5.chr9 92344410 8 + 121549591 GGGAGTGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4098738 8 - 10418462 GGGAGCTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231082004 2 + 243199373 ------GG i hg19.chr2 I 4 I 7 s panTro4.chr2B 235462223 2 + 247518478 ------gg i panTro4.chr2B I 4 I 153 s gorGor3.chr2B 119414389 2 + 131632457 ------gg i gorGor3.chr2B I 4 I 146 s rheMac3.chr12 94014350 2 + 106825570 ------GG i rheMac3.chr12 I 145 I 6 s calJac3.chr6 146688581 8 + 158406734 aggtgtgg i calJac3.chr6 C 0 C 0 s equCab2.chr6 17816490 8 + 84719076 GGGAGCTG i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3617809 253 + 6458163 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=26166.000000 s mm10.chr1_GL456221_random 32365 15 + 206961 CTCTC-TGCATAAAAT s rn5.chr9 92344418 15 + 121549591 CTCTC-TGCATAAAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4098746 15 - 10418462 CTCTC-TGCATGAAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231082013 15 + 243199373 CTCTC-TGCATTAAAT i hg19.chr2 I 7 I 4 s panTro4.chr2B 235462378 15 + 247518478 CTCTC-TGCATTAAAT i panTro4.chr2B I 153 I 4 s gorGor3.chr2B 119414537 15 + 131632457 CTCTC-TGCATTAAAT i gorGor3.chr2B I 146 I 4 s rheMac3.chr12 94014358 15 + 106825570 CTCTC-TGCATTAAAT i rheMac3.chr12 I 6 I 4 s calJac3.chr6 146688589 16 + 158406734 tgctcatgcctgtaat i calJac3.chr6 C 0 I 501 s equCab2.chr6 17816498 15 + 84719076 CGCGT-TGTGTTCACT i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3617809 253 + 6458163 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-2742.000000 s mm10.chr1_GL456221_random 32380 7 + 206961 --GGATTCT s rn5.chr9 92344433 7 + 121549591 --GGGTTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4098761 7 - 10418462 --AGGCACA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231082032 5 + 243199373 --AGATC-- i hg19.chr2 I 4 C 0 s panTro4.chr2B 235462397 5 + 247518478 --AGATC-- i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119414556 5 + 131632457 --AGATT-- i gorGor3.chr2B I 4 C 0 s rheMac3.chr12 94014377 5 + 106825570 --AGATC-- i rheMac3.chr12 I 4 C 0 s equCab2.chr6 17816513 7 + 84719076 GGGCATC-- i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3617809 253 + 6458163 I e calJac3.chr6 146688605 501 + 158406734 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=771725.000000 s mm10.chr1_GL456221_random 32387 549 + 206961 CAAAGGTAGACACCCTAGTCTTC-AAGCATCCCTTAGCTGTCTACAGAGCAAAGTCTTGCTAAAAGATCCATTGGTAGAGGAGATA-AAGGCAGTGCCCAGAAACCACAGAGGCTGAGAAGGACAGACAATAGCATATAACCATCCTGAAAGGGATTTTA--AAACATAAAGTGGGTTTTTAAAACATCTCTTCTTCACTGAGTATGTCCTATGTCCAG-CTTTTGTTCCAAGGATTTCATAGGTAGTAACTTACTGGAG-TTCAC-AAAGCATTGCAAGGTGGTCACTGTCATCACAACTACCTA-ACTGTGGTGAGCTCTAATGCAGACAGGGGTGAGGTAAGCGATCCTCATGCTAGATTATACAATCTGGAGGGGG-----CTGAGTACTAATCAAA-TCTTGACATTCTAGATGCTGGTTTACAGT-----------TGAGAA-------------AGTGCTTGGCCACAGCCAGAGTGTGTGTATAGAGAAAGTTGAATATATATGAGCTGGCTTAGAACAGATCAC-CTGCAGTGTAGCAGAGCACTATCTCATACCAATGCTCATGAGAAAGAGACCACC s rn5.chr9 92344440 540 + 121549591 CAAAGGTAGACATTCTAGTCTTC-AGGCATCCCTTAGCAGTCTACAGAACAAAATCTTGCTAAAAGACCCATTGGTAGAGGAAATA-AAGGTGGTGCCCAGCAAC--CAGAAGCCGAGAGGGACAGACAACAGCACACCACCATCCTGAAAGGGATTTTA--AAAGTTAAAGTGGG-TTTGGAAACATCTCTTattcactgagtatgtcctatgtgcag-tctttgttccaaggatatcataggtagtaacttattggag-ttcac-gaagcgttgcaagatggccactgtcatcacaactaccta-ac--tggagaactccaatgcagacagaggtgaggtaagtgacccTCATGCTGGATCATGTAATGTGGAGGGGG-----CTGAGTACCAATTGAA--CTTGACTTTCTAGTTGCTGGTTTACTAT-----------TGAGAA-------------AGTGCTTGGCCACAGTT---GAGTCTATATAGAGAGAGTTGAGAATAGATGACCTGGGTTAGAACAGATCACTTTGCAGTGTGGCTGAGCAC-ATCTAGTGCCAATGCTTACGGGAAAGGGACCACC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4098768 498 - 10418462 C-AAGACAGACATCCAGGTCCCCAAGGCATCCCTTAGCAGTTCACA-AGCAATGTCTGCTTAAGAGACTCAAAGACATAGGGAGGAGAAGGCAGGGCCCAGCAACAATAAAGGCTGAGAGGCTCTGGCTCGACGATGCCCAGATCCCCAAGGGGCCTCCCGTGAACTTGAGGTGGA---TCACCACAG---------ACCAGgtgtttcctgcgcacca--ctctgttctaagggtttcatacgcagtagcttcttggatcttcac-aaacccctgcaagctgat-gctctgattccatccactta-gctgttgagcacaatgacacagaaactcatgaa---------cctcgccctgggttgtgcagcttggcaggggaagaactgagaac------aa-tcccagcttgctggctgcagGCTTCTGAG-----------TT-GTA-------------GGTCTGTACTCACAGCC---------ACACGGAGCTGGGTTAAACTGGATGGCCTGGG---------------CTCCAGC----CTGAGC-C-GTCAACCAGCCAAGCTCAGGGAACAGGGACCACT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231082037 510 + 243199373 TAAAGGTAAGCATTCTGGTCCCAAAGGCAT-CCTTAGTAGCCTGCAAAGCAATGTCTGCCTAAAAGGCTCATGGGTATAGGAAACA-AGGACAATTCCCAGCAACAATGGAGGCTGAGAGTGACTGAAAATATAATGACAGAATCCC-AAGGCGCTGCAGGTAAACATAAGGAAGGTATTaaaagtagctaatatttatggagtgtttcctgtgtgccagactttgttctaagggtttcatatgcagtaacttatctgattttcataaaacccttgcgaggtggttcctatgactgcacctgtttatactgttgagga-actgagacacagaaatgtttaataa-----cttgccccagggttgcacaactagagagtggaagagctgggagc------aa--------atcctgattccaggcttacagt---------gctaacta-------------tgtgtt---ctatggcc---------acactgATCTGGGTTAAACAAGATGACCTGGG---------------CTACGGC----TGAAGC-C-ATTAACTAGCAATGCTCATGCAACAGGGACCACC i hg19.chr2 C 0 I 3 s panTro4.chr2B 235462402 510 + 247518478 TAAAGGTAAGCAttctggtcccaaaggcat-ccttagtagcctgcaaagcaatgtctgcctaaaaggctcatgggtataggaaaca-atgacaattcccagcaacaatggaggctgagagtgactgaaaatataatgacagaatcCC-AAGGTGCTGCAGGTAAACATAAGGAAGGTATTaaaagtagctaatatttatagagtgtttcctgtgtgccagactttgttctaagggtttcatatgcagtaacttatctgattttcataaaacccttgcgaggtggttcctatgactgcacctgtttatactgttgagga-actgagacatagaaaggtttaataa-----cttgccccagggttgcacaactagagagtggaagagctgggagc------aa--------atcctgattccaggcttacagt---------gctaacta-------------tgtgtt---ctatggcc---------acactgATCTGGATTAAACAAGATGACCTGGG---------------CTGCAGC----TGAAGC-C-ATTAACTAGCAATGCTCATGCAACAGGGACCACC i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119414561 510 + 131632457 TAAAGGTAAGCATTCTGGTCCCAAAGGCAT-CCTTAGTAGCCTGCAAAGCAATGTCTGCCTAAAAGGCTCATGGGTATAGGAAACA-ATGACAATTCCCAGCAACAATGGAGGCTGAGAGTGACTGAAAATATAATGACAGAATCCC-AAGGTGCTGCAGGTAAACATAAGGAAGGTATTaaaagtagctaatatttatagagtgtttcctgtgtgccagactttgttctaagggtttcatatgcagtaacttatctgattttcataaaacccttgcgaggtggttcctatgactgcacctgtttatactattgagga-actgagacatagaaaggtttaataa-----cttgccccagggttgcacaactagagagtggaagagctgggagc------aa--------atcctgattccaggcttacagt---------gctaacta-------------tgtgtt---ctatggcc---------acactgATCTGGGTTAAACAAGATGACCTGGG---------------CTGCAGC----TGAAGC-C-ATTAACTAGCAATGCTCATGCAACAGGGACCACC i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 3618062 511 + 6458163 TAAAGGTAGGCAttcttgtccgaaaggcat-ccttagtagcctgcaaagcaatgtctgcctaaaaggctcatgggtataggaaaca-atgacaattcccagcaacaatggaggctgagagtgactgaaaatgtaatgacagaatcCC-AAGGCGCTGCAGGTAAACATAAGGAAGATATTaaaagtagctaatatgtatagagtgtttcctgtgtgccagactttcttctaagggtttcatatgcagtaacttatctgatcttcataaaacccttgtgaaatggttcctatgactacacctgtttatactgttgtggacactgagacatagaaaggtttaataa-----tttgccccagggttgcacaacccgagagtggaagagctgggagc------aa--------atcctgattctaggcttagagt---------ccTAACTA-------------TGTGTT---CTATGGCC---------ACACTGATCTGGATTAAACAAGATGACCTGGG---------------CTGCAGC----TGAAGC-C-ATTAACTAGCAATGCTCATGCAACAGGGACCACC i nomLeu2.GL397366 I 253 I 3 s rheMac3.chr12 94014382 510 + 106825570 TAAAGGTAGGCATTCTGGTCCCAAAGGCAT-CCTTAGTA-CCTGCAAAGCAATGTCTGCCTAAAAGGCTCATGGGTATAGGAAACA-ATGACAATTCCCAGCAACAATGGAGGCTGAGAGTGACTGAAAATATAATGACAGAATCCC-AAGGCGCTGCAGGTAAACATAAGGAAGATATTaaaagtagctaatatttatagagtgtttcctgtgtgccagactttgttctaagggtttcatatgcagtaacttatctgatcttcataaaacccttgtgagatggctcctatggctgcacctgtttacactgttgaggacactgagacatagaaaggtttaataa-----cttgccccagggttgcacaactcgagagtgaaagagctgggagc------aa--------atcccgattccaggcttagagt---------cctaacta-------------tgtgtt---ccatggcc---------acattgATCTGGGTTAAACAAGATGACCTGGG---------------CTGTAGC----TGAAGC-C-ATTAACTAGCAATGCTCATGCAACAGGGACCACC i rheMac3.chr12 C 0 I 3 s equCab2.chr6 17816520 528 + 84719076 CACAGACAAGCATTCTTGTCCCAGAGGCATCCCTGAGCAGTCTGCAAAGCAATGTCTGCCTCAAAGACTCATGGATATAGGAAGCA-ATGACAACA-CCAGCAACAATGGAGGCTGAAAGAGACCGAAACTATGATGCAAAAATCCCAAGGGGGCTGCTGGTAAACATAAGGCAGATATTAaaaagagctgatatttattgattgcttcctgtgtgccagatgttttttctatgggcttacatgcagtaacttatttgatcttcacaaaacccttgcaagatggt-actatgattgcatgcatgtatgttgtcaaggacactgagacttagacaggtttaataa----------------gttgcacaacttggaagtggtagag--GGGAAC------AAATTCTTACTTTGTGGTTCCAGGCTTACAGTCTGTGTAAGCCTGGTTATAGCCGTAAGTGCTGTGGT---CTGCGGCT---------ATATTGAACTGAGGTAAACAAGCTTGCCTGGA---------------CTGCAGG----TTAAGG-C-AGAAACTAGCATAGCTAGTGAAAAAGGGACAACC i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e calJac3.chr6 146688605 501 + 158406734 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=94466.000000 s mm10.chr1_GL456221_random 32936 55 + 206961 C-AACATGCAGA-------GCTAGAAAGCTGGTAATATTTA--GA-------CACTG----------AAAAATCACTCACAA s rn5.chr9 92344980 55 + 121549591 T-GACATGTGGA-------GCTAGAAACCTGGTAATATTTA--GA-------CACTG----------AAGAATCACTCACAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4099266 58 - 10418462 TGGAAATGGGTA-------GATGGAAACCTGATAGTATTTACGAA-------TTCTA----------ATAAGCAGCTCCCAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231082550 62 + 243199373 ---AAATGGGTAGAGTTCAGCTGGAAACCTGGTAATATTTGGAAA-------CTTTA----------ACGAACCACTCCCAA i hg19.chr2 I 3 C 0 s panTro4.chr2B 235462915 62 + 247518478 ---AAATGGGTAGAGTTCAGCTGGAAACCTGGTAATATTTGGAAA-------CTTTA----------ACGAACCACTCCCAA i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119415074 62 + 131632457 ---AAATGGGTAGAGTTCAGCTGGAAACCTGGTAATATTTGGAAA-------CTTTA----------ACGAACCACTCCCAA i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3618576 62 + 6458163 ---AAATGGGTAGAGTCCGGCTGGAAACCCGGTAATATTTAGAAA-------CTTTA----------ACAAACCACTCCCAA i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94014895 62 + 106825570 ---AAATGGGTAGAGTCCGGCTGGAAACCTGATAATATTTAGAAA-------CTTTA----------ATAAACCACTCCCAA i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146689106 69 + 158406734 ---AGGCAGATA----------TTAAAAGTAGTGATATTTATAGAGTGTTTCCTCTATGAATATCATTTAAACCACTCCCAA i calJac3.chr6 I 501 C 0 s equCab2.chr6 17817048 61 + 84719076 -TAAAAACGGTAAAAA---GATGGAAACCTGATAATACTTAGTAA-------TTTTA----------ATAAGCCACCTACAA i equCab2.chr6 C 0 I 483 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-6604.000000 s mm10.chr1_GL456221_random 32991 2 + 206961 CA s rn5.chr9 92345035 2 + 121549591 CA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4099324 2 - 10418462 CG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231082612 1 + 243199373 T- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235462977 1 + 247518478 T- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415136 1 + 131632457 T- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618638 1 + 6458163 T- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94014957 1 + 106825570 T- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146689175 1 + 158406734 T- i calJac3.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17817109 483 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=427773.000000 s mm10.chr1_GL456221_random 32993 245 + 206961 CTTTGACGC--AAGCAGACAACACA-TGAATAAAATCAGGAAGGATATCAAAAATAGGATTGGTCA--AAG-------TCAGCGCTTGGTTTTA--TGACCCCATTTCATTCTTCA--GGATGGACCTGGGTCTTCTTATGGAATGTTTCTA------------AAAATCGACTGCTTCCGGATCATGAGAAAATAACCAGCGAGAGTATAAC----AGAAAACTTCCAGGTGGCA---------AACTGTTGTAAGAAGG-CAGGCCCTAGTAAACCTTTTGATCA s rn5.chr9 92345037 246 + 121549591 TTTTGAGGT--AAGCAGATAACACA---AATAGAATCAGGAAGGACATGAAAATTAGGATTGGTCA--AAG-------TCACCACTTGGTTTTA--TGACCCCATTTCATTCTTTG--GGTCAGACCTGTGTCTTCTTATGGGCTGTTTATA------------AAAATCGACTGCTTCCAGACCATGAGAAAATAACCAGTCAG-TTATAACAGGAAGAGAACTTCCTGGTGACA---------AACTGTTGTAAGAAGG-CAAGCCCTAGTAAATCTTGCAATCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4099326 249 - 10418462 TTTTGACAT--AAGCAGATGAAAAAATAAATAAAACCATGAAGGATGTGAAA-----GACTGATCAGCAAGGGTGACCTCAGTGGTTTATTTCACCTGACCAC-TTGCGTCTTACAACAGACACACCTG-----CCTTGTGCCGTGCCTACGTGACAAGTAC--AAAACTGACTGTTTATGAATCATG-GAAAATA------CAAATTGTAACAGGCAGAAAATCTGCAGATGACC--------------TTGACAATAGG-GAGGTACTAACAAAGACC-CAGTCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231082613 266 + 243199373 CTTCAACAC--AAATGGGCCAAGCA-TAAATAAAAGCATGAGGGCTGAGAAAGGCATACTTAGTAA--AAG--TGACTTAACTGACTTGTTCAC--TGCAACCATTTCATGTCTCA-------GACATGCG---CCTTTTCCCATGCCCATGCAGCATGTATTAAAGATTGGCCATTTATGGACTGTGAGGAGATATCAA--TAGGTTATAATGGGAAGAAAGTTTACAAATGACATTCTTGACAAATTGTCAAGAAAAGGAAAAGCACTAACAAAACATTCAATCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235462978 266 + 247518478 CTTCAACAC--AAATGGGCCAAGCA-TAAATAAAAGCATGAGGGCTGAGAAAGGCATACTTAGTAA--AAG--TGACTTAACTGACTAGTTCAC--TGCAACCATTTCATGTCTCA-------GACATGTG---CCTTTTCCCATGCCCATGCAGCATGTATTAAAGATTGGCCATTTATGGACTGTGAGGAGATATCAA--TAGGTTATAATGGGAAGAAAGTTTACAAATGACATTCTTGACAAATTGTCAAGAAAAGGAAAAGCACTAACAAAACATTCAATCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415137 266 + 131632457 CTTCAACAC--AAATGGGCCAAGCA-TAAATAAAAGCATGAGGGCTGAGAAAGGCATACTTAGTCA--AAG--TGACTTAACTGACTTGTTCAC--TGTAACCATTTCATGTCTCA-------GACATGTT---CCTTTTCCCATGCCCATGCAGCATGTATTAAAGATTGGCCATTTATGGACTGTGAGGAGATATCAA--TAGGTTATAATGGGAAGAAAGTTTACAAATGACATTCTTGACAAATTGTCAAGAAAAGGAAAAGCACTAACAAAACATTCAATCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618639 266 + 6458163 CTTCAACAC--AAATGGGCCAAGCA-TAAATAAAACCATGAGGGCTGAGAAAGGCAAACTTAGTAA--AAG--TGACTTAACTGACTTGTTCAG--TGCAACCATTTCATATCTCA-------GACATGTG---CCTTTTCCCATGCCCATGCAGCATGTATTAAAGATTGGCCATTTATGGACCATGAGGAGATATCAG--TAGGTTATAATGGGAAGAAAGTTTGCAAATGACATTCTTGACAAATTGTCAAGAAAAGGAAAAGCGCTAACAAAACATTCAATCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94014958 266 + 106825570 CTTCAACAC--AAATGGGCCAAGCA-TAAATAAAAGCATGAGGGCTGAGAAAGGCATACTTAGTAA--AAG--TGACTTAACTGACATGTTCAG--TGCCACCATTTCATGTCTCA-------GACGTGTG---CCTTTTCCCATGACCATGCAGCATTTATTAAAGATTGGCCATTTATGGACCATGAGGAGATATCAA--TAAGTTCCAATGGGAAGAAAATTTATAAATGACATTCTTGACAAATTGTCAAGAAAAGGAAAAGCACTCACAAAACATTCAATCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146689176 259 + 158406734 CTTCAACAC--GAATGGGCCAAGCA-TAAATAAAAGCATGAGGGCTGAGAA--GCATACTTAGTAA--AAG--TGACTTAACTGACTTGTTCAA--TGCAAACATTTCGCATCTCA-------GACATATG---CC-TTTCCCAAGCCCATGCAACGTTTATTAAAGATTGGCCATTTATGGAC-ATGAGAAGATATCAT--TAGGTTATAATGGGCAGAAAATTTACAAATGACATTCTTGACAAGTTGTCAAGAAAAGG-AAGTCACTAACAAAACAGTCAAT-- i calJac3.chr6 C 0 C 0 s equCab2.chr6 17817592 217 + 84719076 CTTCGACACATAAATAGGCCAAACA-TAAATAAAGACAGCAAGAATGTGAAAGACATGATTGGCAA--AGT--TGACTTAACTGATTTATTTTA--TGTATCAATTTTATATTTCA--GAAGAGACATGTG---CTTTTTCTCATGCCCATGCAACATTCAT-AAAAATTGACCATTGATAGGCCATGAGAAAATATCAA--TA--TTGTAATAGGTAGGAAATTTACAGATGA----------------------------------------------------- i equCab2.chr6 I 483 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-88400.000000 s mm10.chr1_GL456221_random 33238 126 + 206961 CAGAGGGGGCGCTTTTGTTGAttggcagt--agtggggatggagtccaggacctgtgcatcttaggcaagtgcccta---------tccctgagctgcatcccAG----CTAGCAACACAGTTCTGTTTATTTGTTTATTT s rn5.chr9 92345283 125 + 121549591 CGGAGGGGTTGG---GAGGGATTGGCAGTGGGGGggggatggagcccaggacctgtgcatcataggcaagtgcccta---------ttgctgagctacatcccAG----CTAAGAGTAAAGTCCTGCTTGTTTGTTTCTGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4099575 83 - 10418462 CC-------------TGGAGATTTTTAAA-------------AGACAAG-------GCAACATG-------GCACTA-------CTTTCTCCAGCTTCATTTGTG----ACAGTGGCACA-------TTCAATGCTTCTAC i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235463244 19 + 247518478 --------------------------------------------------ACTTGAGAGTTTTTAACAA------------------------------------------------------------------------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415403 19 + 131632457 --------------------------------------------------ACTTGAGAGTTTTTAACAA------------------------------------------------------------------------ i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618905 19 + 6458163 --------------------------------------------------ACTTGAGAGTTTTTAACAA------------------------------------------------------------------------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94015224 19 + 106825570 --------------------------------------------------ACTTGAGGATTTTTAACAA------------------------------------------------------------------------ i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146689435 13 + 158406734 ------------------------------------------------GGACTTGAGATTT-------------------------------------------------------------------------------- i calJac3.chr6 C 0 C 0 s equCab2.chr6 17817809 58 + 84719076 ---------------------------------------------------------CATTCTTGGCAAATTGCCAAAAAAAGAAAGTGCTAACAAAAAATTCAATCACCTAGTG-------------------------- i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231082879 0 + 243199373 C e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=38543.000000 s mm10.chr1_GL456221_random 33364 83 + 206961 GTTTG-CTAATCTTAAAC------------ACAAAGAAG--------GCAAGGGTCCCC-CTTTCC---------TCTTTTTAAAACAGAATATAAAATATTAAAGAGTATTTC- s rn5.chr9 92345408 74 + 121549591 GTTTGTTTTGTCTTAAAC------------ACAAAGAAG---AAGAAGACAAGGGCCCC-CTTTCC---------TCCTTTTTAAACAGAATATTA---------------CTG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4099658 59 - 10418462 TCCCA-TTGAAATTTGGC------------aaaaaaaaaaaaaaaaaaaaaaaGac---------------------------aaaaaaagaataa---------------tcc- i speTri2.JH393335 C 0 I 116 s hg19.chr2 231082879 85 + 243199373 -----------ACTTGACAGTTTTTAACAAACAGAACAA--------ACATGGATTCCA-CTTTTCCAACTTCATTTTGTGTTGAACAGAAAAGTAAATCGTAAT---------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235463263 66 + 247518478 ------------------------------ACAGAACAA--------ACATGGATTCCA-CTTTTCCAACTTCATTTTGTGTTGAACAGAAAAGTAAATCGTAAT---------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119415422 66 + 131632457 ------------------------------ACAGAACAA--------ACATGGATTCCA-CTTTTCCAACTTCATTTTGTGTTGAACAGAAAAGTAAATTGTAAT---------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3618924 66 + 6458163 ------------------------------ACAGAACAA--------ACATGGATTCCA-CTTTTCCAACTTCATTTTGTGTTGAACAGAAAACTAAATTGTAAT---------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94015243 66 + 106825570 ------------------------------ACAGAACAA--------ACGTGGATTCCA-TTTTTCCAACTTCATTTTGTGTTGAACAGAAAACTAAATTGTAAT---------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146689448 74 + 158406734 ----------------------TTTAAAAAACAAAACAA--------ACATGGATTCCATTTTTTCCAACTTCATTTTGTGTTGAACAG-AAATTAAATTGTAAT---------- i calJac3.chr6 C 0 C 0 s equCab2.chr6 17817867 79 + 84719076 ------------------ATTTTTTAACAAATAAAACAA--------ACAGGGACCCCA-TTTTTCCAACTTCATTTTGTATCAAAGAGAAAATTGCACTGTAAT---------T i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=215820.000000 s mm10.chr1_GL456221_random 33447 112 + 206961 CAAAGAGTATTTCCAGGAATTTAATCCCAGCATCACATTGAGTAGACTTGTCCGTCCCTTTTTTCTTC---TTTCCCA-ATCTCTTCAACTTAGCAAAAAAAAATGT---TGAGGAGAA- s rn5.chr9 92345482 103 + 121549591 TAATATATATTTCCAGGAATTTAATTTCAGCATCAAATTAAGCAGTCTGGTCC-------CTTTCTTC---TTTCCTA-GTCCCTTAAACTTAGCAAGAAAAA--CT---TGAGGAGAA- i rn5.chr9 C 0 C 0 s hg19.chr2 231082964 108 + 243199373 TAACAACTGTTTACAGGGATTTAATCCCAGTGGCAGATTAAGCACCCTAGTCT-------CTTTCTCCTCATTCCCCA-ATTTTTTTAACTTGGCAGAAAAAAATAC---TCATGAAAA- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235463329 108 + 247518478 TAACAACTGTTTCCAGGGATTTAATCCCAGtggcagattaagcaccctagttt-------ctttctcctcattcccca-atttttttaacttggcagaaaaaaatac---tcatgaaaa- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119415488 108 + 131632457 TAACAACTGTTTCCAGGGATTTAATCCCAGtggcagattaagcaccctagtct-------ctttctcctcattcccca-atttttttaacttggcagaaaaaaatac---tcatgaaaa- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3618990 108 + 6458163 TAACAACTgtttccggggatttaatgccgatggcagattaagcatcctagttt-------ctttctcctcattcccca-atttttttaacttggcagaaaaaaatac---tcatgaaaa- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94015309 108 + 106825570 TAACAACTGTTTCCAGGGATTTAATCCCAGtggcggattaagcaccatagtct-------ctttctcctcattcccca-atgtttttaacttggcagaaaaaagtac---tcatgaaaa- i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146689522 109 + 158406734 TAACAACTGTTTCCAGGGATTTAATTCCAGTAGCAGATGAAGCACCCTAGTCT-------CTTTCTCCTCATTCCCAATTTTTTTTTAACTTGGCAAAAAAAAAAAA---TCATGAAAA- i calJac3.chr6 C 0 I 1 s equCab2.chr6 17817946 111 + 84719076 -AATGAGGATTTCTAGGGGTTTCATCCCAGCGGCCGATTGAAAACCCCTGTCT-------CTCTCTCATCATTCCCAA-ATCCTTTAAGTTTGACAGAAAAAAATACATGTTGTAAAAAA i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4099717 116 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=394366.000000 s mm10.chr1_GL456221_random 33559 196 + 206961 -AACAAAAAGAAGCCAACTTCACAGTAGGACTGTAGAGCAGGGAGATGTGTCAAGGATCATC--CAGTCCTGAGGGAATCCTGGCAGACTGGG----G-----ACAGGTGGGAGGGAAAGCTGTTG---AGGCTACTTGTGGG------------------------------------GGAGGGGAGGGGAGGCAGCAAGAACATGTGCTCTG-------------------GGTTCTGCTTAGGATGGC---------AGCAGCACTCAGAAC s rn5.chr9 92345585 201 + 121549591 -AACAAAAAGAAGACAATTTCACAGGGGAACTGTGGAACGGGGAGGTGTGTCATGGACCGTT--CAGTCCTGAGGAAATTCAGGCAGACAGGGGACAG-----ACAGGTGGGTGAGAAAGCTGTTG---AGGATATGCATGGT--------------------------------------------GGGGGGGCAGCATGAACATGTGCTCTG-------------------GGCGCCACTTAGGATGACTTGTTATAGAGCAGCACTCAGGCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4099833 202 - 10418462 -aataataataatCCACAACAGCAGTGGTAAAGGAGAACAGATGCGGGCTTCA-----------------TGAAGAAATCCTAAAAGATAGAGAACGGTGTGCACAGGGAGGAGAGAGTG----TA---AGGGTGAGTGCAGAG---------------------------TC-AATG-GGAGCCAGAGGGAGGCCACCCCCACACCAACCACG-------------------GGCTTCACTTAGGACCCTTCATCATACAACAGCATTCCAAAT i speTri2.JH393335 I 116 C 0 s hg19.chr2 231083073 244 + 243199373 -AATAA------------TCCGCAATCGCATAGGAAAACAAGAAAAGATGCCATTGAGAGTCTGTGGTGGTAAAGAAGTCTTGGAAGATAGAG----A-----ACAGATAGGAGAGAAATCTACTATCCACAATATGCACAGGGGAAGG--------AGATAGTGCAAAGATC-AGTGCAAAGTCAGAGAAAGGCAGAGTAAACATATACTAAGAAGAGGAAGGGGTCTTGGAGGCTCCTTTTAGAACAATTCATTATACAGCAGCGCTCAGAAC i hg19.chr2 I 1 C 0 s panTro4.chr2B 235463438 244 + 247518478 -aataa------------tccgcaatcgcataggaaaacaagaaaagatgccattgagagtctgtggtggtgaagaagtcttggaagatagag----a-----acagataggaGAGAAATCTACTATCCACAATATGCACAGGGGAAGG--------AGATAGTGCAAAGATC-AGTGCAAAGTCAGAGAAAGTCAGAGTAAACATATACTAAGAAGAGGAAGGGGTCTTGGAGGCTCCTTTTAGAACAATTCATTATACAGCAGCGCTCAGAAC i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119415597 244 + 131632457 -aataa------------tccgcaatagcataggaaaacaagaaaagatgccattgagagtctgtggtggtgaagaagtcttggaagatagag----a-----acagataggaGAGAAATCTACTATCCACAATATGCACAGGGGAAGG--------AGATAGTGCAAAGATC-AGTGCAAAGTCAGAGaaagtcagagtaaacatatactaagaagaggaaggggtcttggaggctccttttagaacaattcattctacagcagcgctcggaac i gorGor3.chr2B I 1 I 11 s nomLeu2.GL397366 3619099 245 + 6458163 -aataa------------tccgcaatagcattggaaaacaagaaaagatgccattgagagtctgtgatggtgaagaagtcttggaagagagag----a-----acagataggaGAGAAATCTACTATCCACAATATGCATAGGGGAAGG--------AGATGGTGCAAAGATCAAGTGCAAAGTCAGAGAAAGTCAGAATAAACATATATTAAGAAGAGGAAACGGTCTTGGGGGCTCCTTTTAGAACAATTCATTATACAGCAGCGCTCAGAAC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94015418 244 + 106825570 -aataa------------tctgcaatagccctggaaaacaagaaaagatgccactgagaatctgtggtcgggaagaagtcttggaagatagag----a-----acagataggaGAGAAATCTACTATCCACAATATGCCTAGGGGAAGG--------AGATAGTGCAAAGATC-AGTGCAAAGTCAGAGAAAGTCAGAATAAACATATACTAAGAAGAGGAAGGGGTCTGGGGGGCTCCTTTTAGAACAATTCATTATACAGCAGCGCTCAGCAC i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146689632 243 + 158406734 -AATAA------------TCTGCAATAGCACTGGAAAACCAGAAAAGATGCTATTGAGAGTCAGTGGTGGGGAAGAAGTTTTGGAAGACAGAG----A-----ACAGATAGGAGAGAAATCTACTATCCACAATATAGCTAGGGGAAGG--------AGATAGTGCAAAGATC-AGTGCAGAGTCAGAGAAAGTCAGAATGAATATATGCTAAGAAGAGGAAGGGGTCTTGG-GGCTTCTTTTAGGACAGTTCATTACATAGCAGTGCTCAGAAC i calJac3.chr6 I 1 C 0 s equCab2.chr6 17818057 252 + 84719076 GACTAA------------TCCACAACAGTCTTGGAAAACAAGAAAAGATGCCATAGGGAGTCTATAGTCGTGAAGAAATCCTGGAAGATAGAG----G-----ACAGATGGGAGAGAAATAGAGCATCCATGATATGGACAGGGTAAGGACCGAGAAAGACATTGCAAAGATC-AGCACAGAGCCAGAGAAAGCGAGAGTGAACACATGATAAGAAGAGGAAGGGGCCCTGG-GGTTACATTTAGGATGATTAATTATACAACAGAATTCGGTGC i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-6642.000000 s mm10.chr1_GL456221_random 33755 14 + 206961 TACGCTGCTGTGGC---- s rn5.chr9 92345786 11 + 121549591 TAC---ACTGTGAC---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100035 3 - 10418462 AGG--------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231083317 8 + 243199373 ------AGGAAGTC---- i hg19.chr2 C 0 I 5 s panTro4.chr2B 235463682 8 + 247518478 ------AGGAAGTC---- i panTro4.chr2B C 0 I 5 s nomLeu2.GL397366 3619344 8 + 6458163 ------AGGAAGTC---- i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94015662 8 + 106825570 ------AGGAAGTC---- i rheMac3.chr12 C 0 I 5 s calJac3.chr6 146689875 8 + 158406734 ------AGGAAGTC---- i calJac3.chr6 C 0 I 3 s equCab2.chr6 17818309 12 + 84719076 ------AGAACATTCGCC i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e gorGor3.chr2B 119415841 11 + 131632457 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=315333.000000 s mm10.chr1_GL456221_random 33769 146 + 206961 AACTTTGCCATTTGCCACCTGCCACAGTTTCCGAAGATGGAAGTCAGATCTACAGAGGTTAAGTACCTGTGCCAAGGACACCA-ATCTACAGTAGACTGTGTCTGTCTC-TGATATTTTGTTT-CTCACTGTGCAAGATATGGTATCTC s rn5.chr9 92345797 139 + 121549591 AGCTTTGTCATTTGTCACCTGCCGCAGTTTCT-------GAAGTCAGACCAACAGAGGTTAAGTACCTAGCCCTAGGACACCA-ATCTACAGTAGAGTGTGTCTGTCTC-TGATACTTTGTTT-TTCCCTGTGCAAGATACTGTACCTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100038 141 - 10418462 -ACCTCACCAAACtcctccttcctcatcctga-------aagatgagaatgaggcaggttaagtaaccagcccaaggcatccagGGGCAAAGCAGGCTTTATCTGACTCTTTATTTCCTGTTTGCTCACTATGAAAGATGCCACATCTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231083330 145 + 243199373 --CTTCCTCATTCTTCATCTGTCATGAGTCCCAAAgatgaaagggaggcacagagaggtttagtaactcacccaaggtattcagtggcaaagcagagcttgtctgactc-taaagccctgttt-ctttctatgcaagatactacatctc i hg19.chr2 I 5 C 0 s panTro4.chr2B 235463695 145 + 247518478 --CTTCCTCATTCTTCATCTGTCATGAGTCCCAAAgatgaaagggaggcacagagaggtttagtaactcacccaaggtattcagtggcaaagcagagcttgtctgactc-taaagccctgttt-ctttctatgcaagatactacatctc i panTro4.chr2B I 5 I 169 s gorGor3.chr2B 119415852 147 + 131632457 agcttcctcattcttcatctgtcacgAGTCCCAAAgatgaaagggaggcacagagaggtttagtaactcacccaaggtattcagtggcaaagcagagcttgtctgactc-taaagccctgttt-ctttctatgcaagatactacatctc i gorGor3.chr2B I 11 I 169 s nomLeu2.GL397366 3619357 145 + 6458163 --CTTCCTCATTCTTCATCTGTCATGAGTCCCAAAgatgaaagggaggcacagagaggtttagtaactcacccaaggtattcagtggcaaagcagagcttgtctgactc-taaagtcctgttt-ctttctatgcaagatactacatctc i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 94015675 145 + 106825570 --CTTCCTCATTCTTCGTCTGTCATGAGTCCCAAAgatgaaagggaggcacagagaggtttagtaagtcacacaaggtattcagtggcaaagcagagcttgtctgactc-taaaatcctgttt-ctatctatgcaagacactatatctc i rheMac3.chr12 I 5 C 0 s calJac3.chr6 146689886 147 + 158406734 AGCTTCCTCATTCTTTATCTGTCATGAGTCCCAAAgatgaaaggggggcacagagagatcaagtaactcacccaaggtattcagtggcaaagtagagcttgtctgactc-taatatcctgttt-ctctctatacaagatactacatctc i calJac3.chr6 I 3 C 0 s equCab2.chr6 17818321 125 + 84719076 AGGTTCCTCACTCTTCATCTGTTACCATTCCGAAGgatgaaagtgaggtacagagaggttaagtaactagccccaggtattcagtggcaaagcagagcttGTCTGAC---TAAAGCTCCATTT-CTCAC-------------------- i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=1564.000000 s mm10.chr1_GL456221_random 33915 1 + 206961 A s rn5.chr9 92345936 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100179 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231083475 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464009 1 + 247518478 a i panTro4.chr2B I 169 I 11 s gorGor3.chr2B 119416168 1 + 131632457 a i gorGor3.chr2B I 169 I 11 s nomLeu2.GL397366 3619502 1 + 6458163 A i nomLeu2.GL397366 C 0 I 181 s rheMac3.chr12 94015820 1 + 106825570 A i rheMac3.chr12 C 0 I 500 s calJac3.chr6 146690033 1 + 158406734 A i calJac3.chr6 C 0 I 180 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e equCab2.chr6 17818446 0 + 84719076 C e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=21277.000000 s mm10.chr1_GL456221_random 33916 28 + 206961 agcctgaggaaatggtgcaagcctttaa s rn5.chr9 92345937 28 + 121549591 agcctgaggaaatggtacaagcctttaa i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100180 27 - 10418462 gggctggggatgtggctcaag-cggtag i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235464021 28 + 247518478 ggccaggcatggtggctcatgcctgtaa i panTro4.chr2B I 11 C 0 s gorGor3.chr2B 119416180 28 + 131632457 ggccaggcatggtggcttatgcctgtaa i gorGor3.chr2B I 11 C 0 s nomLeu2.GL397366 3619684 28 + 6458163 ggccaggcatggtggctcatgcctgtaa i nomLeu2.GL397366 I 181 C 0 s calJac3.chr6 146690214 28 + 158406734 ggctggacacagtgagtcatgcctgtaa i calJac3.chr6 I 180 C 0 s equCab2.chr6 17818446 16 + 84719076 ------------TGGTGTGTGACATTAA i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231083476 0 + 243199373 C e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=9057.000000 s mm10.chr1_GL456221_random 33944 10 + 206961 tgccagcact s rn5.chr9 92345965 10 + 121549591 tgctaaccct i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100207 10 - 10418462 cgcgctcgcc i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235464049 10 + 247518478 tcccagcact i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119416208 10 + 131632457 tcccagcact i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 3619712 10 + 6458163 tcccagcact i nomLeu2.GL397366 C 0 I 3 s calJac3.chr6 146690242 10 + 158406734 tcccagcact i calJac3.chr6 C 0 I 5 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e equCab2.chr6 17818462 0 + 84719076 C e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231083476 0 + 243199373 C e papHam1.scaffold15394 21657 3328 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=289.000000 s mm10.chr1_GL456221_random 33954 1 + 206961 a s rn5.chr9 92345975 1 + 121549591 g i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100217 1 - 10418462 t i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235464062 1 + 247518478 g i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119416221 1 + 131632457 g i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3619725 1 + 6458163 g i nomLeu2.GL397366 I 3 C 0 s papHam1.scaffold15394 24985 1 - 58077 g i papHam1.scaffold15394 I 3328 I 1117 s calJac3.chr6 146690257 1 + 158406734 g i calJac3.chr6 I 5 C 0 s pteVam1.scaffold_24822 6116 1 + 7207 a i pteVam1.scaffold_24822 N 0 N 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e equCab2.chr6 17818462 0 + 84719076 C e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231083476 0 + 243199373 C e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=29128.000000 s mm10.chr1_GL456221_random 33955 98 + 206961 gaggcaaaag------------------cagttggaggccatcctgatatatat----agttc-caggacactcagggctacaca--gaaattctgtc--------------ttgaagaGGGG-----AAAAAAGATCCTGT s rn5.chr9 92345976 124 + 121549591 gaggcaaaggcaggcagatctctg---ccagttccaggccatcctggtatgtacagtaagttc-caggacactcagggatacacagtgaaacccagtc--------------ctcaagaggggaaaaaaaaaaAGATCCTGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100218 132 - 10418462 ggcatgcgtgcagcccgggttcgatcctcagcacca---caaacaaacaaagatgttgtgtccgccaaaaactgaaaaataaacattgaaattctctctctcctctctctctcttaaaaag-------aAAAAAGATGCCAC i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235464063 99 + 247518478 gaggttgaggtgggcgga---------tcagct-taggtcagg---------------agttc-gagaccagcctggccaacatggtgaaaccctgtctcta----------ctaaaaata-------caaaaattagctgt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416222 99 + 131632457 gaggttgaggtgggcgga---------tcagct-gaggtcagg---------------agttc-gagaccagcctggccaacatggtgaaaccctgtctcta----------ctaaaaata-------caaaaattagctgg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3619726 98 + 6458163 gaggtcgaggcaggtgga---------tcacct-gaggtcagg---------------agttt-gagaccagcctggctgacatggtgaaa-cctgtctcta----------ctgaaaata-------caaaaattagctgg i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146690258 99 + 158406734 gaggccaaggcgggcgga---------taacct-gaggtcagg---------------agttt-gagaccagccaggccaacatggtgaaatcctgtctcta----------ctaaaaata-------caaaaattagctgg i calJac3.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e equCab2.chr6 17818462 0 + 84719076 C e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231083476 0 + 243199373 C e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-2052.000000 s mm10.chr1_GL456221_random 34053 4 + 206961 GTCT s rn5.chr9 92346100 4 + 121549591 GTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100350 4 - 10418462 ATCT i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235464162 2 + 247518478 gc-- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119416321 2 + 131632457 gc-- i gorGor3.chr2B C 0 I 23 s nomLeu2.GL397366 3619824 4 + 6458163 gcgt i nomLeu2.GL397366 C 0 I 21 s calJac3.chr6 146690357 4 + 158406734 gtgt i calJac3.chr6 C 0 I 21 s equCab2.chr6 17818462 4 + 84719076 GTGT i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e hg19.chr2 231083476 0 + 243199373 C e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-740.000000 s mm10.chr1_GL456221_random 34057 5 + 206961 C--AGCT s rn5.chr9 92346104 5 + 121549591 C--AGAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100354 7 - 10418462 CATAGAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231083476 5 + 243199373 --TATAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464165 5 + 247518478 --catct i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119416346 5 + 131632457 --cagtt i gorGor3.chr2B I 23 I 88 s nomLeu2.GL397366 3619849 5 + 6458163 --cagct i nomLeu2.GL397366 I 21 C 0 s calJac3.chr6 146690382 5 + 158406734 --cagct i calJac3.chr6 I 21 I 106 s equCab2.chr6 17818466 5 + 84719076 --CATAT i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=2100.000000 s mm10.chr1_GL456221_random 34062 1 + 206961 G s rn5.chr9 92346109 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100361 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231083481 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464170 1 + 247518478 g i panTro4.chr2B C 0 I 137 s nomLeu2.GL397366 3619854 1 + 6458163 g i nomLeu2.GL397366 C 0 C 0 s equCab2.chr6 17818471 1 + 84719076 G i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e gorGor3.chr2B 119416351 88 + 131632457 I e calJac3.chr6 146690387 106 + 158406734 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-815.000000 s mm10.chr1_GL456221_random 34063 3 + 206961 CCT- s rn5.chr9 92346110 3 + 121549591 CCT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100362 3 - 10418462 ACT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231083482 3 + 243199373 ACT- i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3619855 2 + 6458163 -ct- i nomLeu2.GL397366 C 0 I 153 s equCab2.chr6 17818472 3 + 84719076 -CGA i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e gorGor3.chr2B 119416351 88 + 131632457 I e panTro4.chr2B 235464171 137 + 247518478 I e calJac3.chr6 146690387 106 + 158406734 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=20893.000000 s mm10.chr1_GL456221_random 34066 42 + 206961 GCATGCAGGTTTTTATTATGTTAAGGG-CCTTACAAATAAATT s rn5.chr9 92346113 42 + 121549591 GCATTCAGGTTTTTATTATGTTAAGGG-CCTTACAAATAAATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100365 42 - 10418462 ATGTTCAGATTTTTATtatgtaaagggactttgcaaataagc- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231083485 41 + 243199373 --GTTCAGatttttattatgtaaagagattttgcaaacgaata i hg19.chr2 C 0 C 0 s equCab2.chr6 17818475 43 + 84719076 GTGTTCAGatttttattctgtaaaggagtcttaaaaatgaatg i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3619857 153 + 6458163 I e gorGor3.chr2B 119416351 88 + 131632457 I e panTro4.chr2B 235464171 137 + 247518478 I e calJac3.chr6 146690387 106 + 158406734 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-7863.000000 s mm10.chr1_GL456221_random 34108 45 + 206961 ATGGAA----AGA-CAAACACCCATTA-GGAAAGACAA----AGCCCCAAA------CAAT s rn5.chr9 92346155 55 + 121549591 AGGAAAAGACAGA-CAAACATCCATTA-GGAAAGACAA----AGCCCCAAACACAAGCAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100407 45 - 10418462 ---aaa----ata-caaacgtctaagt-ggaaaaaaaa-atgagcacgcaa------ctaa i speTri2.JH393335 C 0 C 0 s hg19.chr2 231083526 45 + 243199373 agcaaa----aga-caaacatccaact-agaaaataaa----aaagcaaaa------taca i hg19.chr2 C 0 I 19 s gorGor3.chr2B 119416439 37 + 131632457 -gtgac----agagcgagactccatctcagaaaacaac----a---------------aca i gorGor3.chr2B I 88 I 7 s calJac3.chr6 146690493 23 + 158406734 -----------------------atct-caaaacaaac----a----caaa------caaa i calJac3.chr6 I 106 I 8 s equCab2.chr6 17818518 49 + 84719076 agcaaa----aga-caaacatctatgt-agaaaaaaagcaaaagatataaa------caag i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3619857 153 + 6458163 I e panTro4.chr2B 235464171 137 + 247518478 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-23348.000000 s mm10.chr1_GL456221_random 34153 42 + 206961 CAATAAAATGAGCATCATATACAATGA---ATGCA-TAA-TTAATCT s rn5.chr9 92346210 41 + 121549591 CAATAAAATGAGCATCAT-TACAATGA---ATGCA-TAA-TTAAGCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100452 46 - 10418462 gagaagaataagccacatgtgcaatgatctgtgaa-aagcttaactt i speTri2.JH393335 C 0 C 0 s hg19.chr2 231083590 38 + 243199373 -----gaataagccaaatgtgcaatga---ataatacga-taagcat i hg19.chr2 I 19 I 11 s panTro4.chr2B 235464308 27 + 247518478 -----caaca----------gcaacaa---acaac-caa-aaaaagt i panTro4.chr2B I 137 I 6 s gorGor3.chr2B 119416483 24 + 131632457 --------ca----------acaaaaa---acaaa-caa-aaaaagt i gorGor3.chr2B I 7 I 6 s calJac3.chr6 146690524 31 + 158406734 -----------caaaaaaacccaaaac---aaaat-cat-ccaacat i calJac3.chr6 I 8 I 8 s equCab2.chr6 17818567 27 + 84719076 ----caattaagtcaaatgcataatag---atta------------- i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3619857 153 + 6458163 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-10439.000000 s mm10.chr1_GL456221_random 34195 15 + 206961 GGGAAAAGGCAGACA---------------------- s rn5.chr9 92346251 15 + 121549591 GGGAAAAGTCAGACA---------------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100498 15 - 10418462 gctagtcattagaaa---------------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231083639 11 + 243199373 ----agtagaaagca---------------------- i hg19.chr2 I 11 I 324 s panTro4.chr2B 235464341 7 + 247518478 --------gaagaca---------------------- i panTro4.chr2B I 6 C 0 s gorGor3.chr2B 119416513 7 + 131632457 --------gaagaca---------------------- i gorGor3.chr2B I 6 C 0 s nomLeu2.GL397366 3620010 15 + 6458163 gtgtaaatgaagaca---------------------- i nomLeu2.GL397366 I 153 C 0 s calJac3.chr6 146690563 4 + 158406734 ----------agac----------------------- i calJac3.chr6 I 8 C 0 s equCab2.chr6 17818594 31 + 84719076 ------aaaaaaacagtaactcactagtaggtagaac i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-328.000000 s mm10.chr1_GL456221_random 34210 9 + 206961 AGT----CGAAGG s rn5.chr9 92346266 10 + 121549591 AGTG---GGAAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100513 13 - 10418462 aatgcacagaaag i speTri2.JH393335 C 0 C 0 s hg19.chr2 231083974 9 + 243199373 aaa----tgaaga i hg19.chr2 I 324 I 2 s calJac3.chr6 146690567 9 + 158406734 agt----tggata i calJac3.chr6 C 0 C 0 s equCab2.chr6 17818625 10 + 84719076 agtg---caaagg i equCab2.chr6 C 0 I 6 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e rheMac3.chr12 94015821 500 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3620025 0 + 6458163 C e gorGor3.chr2B 119416520 0 + 131632457 C e panTro4.chr2B 235464348 0 + 247518478 C e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=364948.000000 s mm10.chr1_GL456221_random 34219 164 + 206961 AC---TTGACAGTGCATAGTACTATCAAAGTGACCAGGAGACGAAACAATAGCCACAGTCCATGATA----GGGTAGAAGTGAAAAGCA-TTCAAGTGTTCT--GTGGCTTATTTGG-AATCAGGGTCACCAGCTGTAAAAATT-------------------------ACATTTCCCTTGAAT------TTTCACGCACAGTAAT s rn5.chr9 92346276 160 + 121549591 CC---TTGATAGCGCATAT-----TCAAAGTGACCAGGAAAGAAAACAACAGCCACCCTCCCCAGTA----GGGTAGAAATGGAAAGCATTTCAAGTGTTCT--GTGGCTCATTTGGTAATCAGGGTCGCCAGCAGTAAAAATT-------------------------AAA-TTCCCTTGAAT------CTTCATGCGCAGTAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4100526 169 - 10418462 acaatgtgaccgcacatctgcctgtc---ttggccaagacagaaaacaacagcaacaatcccaggcac--tggatggaaatggaaacaggctgagatcctcCAAGTGGCTCATTTAGCAACCAGCATCAAATGTCCTAAAATGT-------------------------GTA-TTCCTTCAAAT------TTCCACCTCCAGAAAT i speTri2.JH393335 C 0 I 3298 s hg19.chr2 231083985 170 + 243199373 ---atttgataacatatttgtctatcaaattggccaagatagaaaataatagtaataatctcagacactgtgagtgggaaggtcaacaggtccaaatgttct-gaaggctgatttagtaatcagtgtcaaatgtcctaaaacat-------------------------gtg-ctcctttgaat------ttccacttctaataat i hg19.chr2 I 2 C 0 s panTro4.chr2B 235464348 170 + 247518478 ---atttgataacatatttgtctatcaaattggccaagatagaaaataatagcaataatctcagacactgtgagtgggaaggtcaacaggtccaaatgttct-gaaggctgatttagtaatcagtgtcaaatgtcctaaaacat-------------------------gtg-ctcctttgaat------ttccacttctaataat i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416520 170 + 131632457 ---atttgataacatatttgtctatcaaattggccaagatAGAAAATAATAGCAATAAtctcagacactgtgagtgggaaggtcaacaggtccaaatgttct-ggaggctgatttagtaatcagtgtcaaatgtcctaaaacat-------------------------gtg-ctcctttgaat------ttccacttctaataat i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620025 170 + 6458163 ---atttgataacatatttgtctatcaaattggccaagatagaaaataatagcaataatctcagacactgtgagtgggaaggtcaacaggtccaaatgttct-gggggctgatttagtcatcagtgtcaaatgccctaaaatat-------------------------gtg-ctcctttgaat------ttccacttctaataat i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016321 170 + 106825570 ---atttgataacatatttgtctatcaaattggccaagatagaaaataatagcaataatctcagacactgtgagtgggaaggtcaacaggtccaaatgttct-ggaggctgattcagtaatcagtgtccaatgccctgaaacat-------------------------ggg-ctcctttgaat------ttccacttctaataat i rheMac3.chr12 I 500 C 0 s calJac3.chr6 146690576 187 + 158406734 -----------acatatttgtctatcaaattggccaaggtagaaaataatggccataattccagacactgtgagtgggaacgtaaacaggtccgaatgttct-ggaggctgatttagtaattagcgtcaaatgccctaaaatatgattatttccttgaaacaaattacagaa-ttcctttgaat------tcccacttctaataat i calJac3.chr6 C 0 C 0 s equCab2.chr6 17818641 175 + 84719076 ---atttgataacatatttgcctatcaagttggccaagatagaaaatactagaaataatcgcagatgctcttggtggaaatgtaaacagatccaa-cgttct-gtaggctaatttagtaatcagtgtcaaatactctaaaatat-------------------------atg-ttcccttgagtcccaaacttgacttctaggaat i equCab2.chr6 I 6 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=215474.000000 s mm10.chr1_GL456221_random 34383 122 + 206961 GTATTTCAGTGAAATGACCA----TGGACTAAAACCAAAACAAAGCAAACATAC--AAAAACCATCCATACCCCCGCTAGAGAG--AAGTAAGGGCGCCCCTTA--CTTTCTCTTTCCCAATAGCTCCATAA s rn5.chr9 92346436 123 + 121549591 GTATTTCAGTGAAATGACCA----TGGATTAAAAACAAAACAAAACAAACATACAAAAAAAAAATCCATA-GCGTGCTAGAGAG--AAGTATGGAGGCTTCTCA--TTTTCTCTTTCCCAATAGCTTCATAA i rn5.chr9 C 0 C 0 s hg19.chr2 231084155 111 + 243199373 ttatttcaaggaaataatca----tgtatt----------tagagaaaatatat--aaaaa--gttcatG-ATACACTAGAGACGAAATTAAATGTACTCTCAT--TTTTTTCTTTTCCACCAGCTTCCCAA i hg19.chr2 C 0 I 14 s panTro4.chr2B 235464518 111 + 247518478 ttatttcaaggaaataatca----tgtgtt----------tagagaaaatatat--aaaaa--gttcatG-ATACACTAGAGATGAAATTAAATGTACTCTCAT--TTTTTTCTTTTCCACCAGCTTCCCAA i panTro4.chr2B C 0 I 14 s gorGor3.chr2B 119416690 111 + 131632457 ttatttcaaggaaataatca----TGTGTT----------TAGAGAAAATATAT--AAAAA--GTTCATG-ATACACTAGAGACGAAATTAAATGTACTCTCAT--TTTTTTCTTTTCCACCAGCTTCCCAA i gorGor3.chr2B C 0 I 14 s nomLeu2.GL397366 3620195 111 + 6458163 ttatttcaaggaaataatca----tgtgtt----------tagagaaaatatat--aaaaa--gttcatG-ATACACTAGAGAGGAAATTAAATGTACTTTCAT--TTTTTTCTTTTCCGCCAGCTTCCCAA i nomLeu2.GL397366 C 0 I 14 s rheMac3.chr12 94016491 114 + 106825570 ttatttcaaggaaataatcatgagtgtgtt----------tagagaAAATATAT--AAAAA--GTTCACG-ATACACTAGAGAGGAAATTAAATGTACTCTCA---TTTTTTCTTTTCCACCAGCTTCCCAA i rheMac3.chr12 C 0 I 14 s calJac3.chr6 146690763 115 + 158406734 ttatttcaaggaaataatcatgaatgcatt----------taaagaaaatatat--aaaaa--gttcatG-ATACATTGGAGAGGAAATTAAATGTACTCTCAT--GTTTTCCTTTTCCACCAGCTTCCCAA i calJac3.chr6 C 0 I 14 s equCab2.chr6 17818816 117 + 84719076 ttatttcaaggaaatagtcatgaacatgct----------taaagaaaatttac--aaaaa--gttcatG-ATATACTAGAGAGGAAATTAACTGTTCTCTTCTTATTTTCTCTTTTCCACCAGCTCCCCAG i equCab2.chr6 C 0 I 131 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 21418 3242 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=8852.000000 s mm10.chr1_GL456221_random 34505 3 + 206961 TTA s rn5.chr9 92346559 3 + 121549591 TTA i rn5.chr9 C 0 C 0 s hg19.chr2 231084280 3 + 243199373 TTA i hg19.chr2 I 14 C 0 s panTro4.chr2B 235464643 3 + 247518478 TTA i panTro4.chr2B I 14 C 0 s gorGor3.chr2B 119416815 3 + 131632457 TTA i gorGor3.chr2B I 14 C 0 s nomLeu2.GL397366 3620320 3 + 6458163 TTA i nomLeu2.GL397366 I 14 C 0 s rheMac3.chr12 94016619 3 + 106825570 TTA i rheMac3.chr12 I 14 C 0 s calJac3.chr6 146690892 3 + 158406734 TTA i calJac3.chr6 I 14 C 0 s turTru2.JH490333 24660 3 - 53618 CTA i turTru2.JH490333 I 3242 I 433 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e equCab2.chr6 17818933 131 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=121536.000000 s mm10.chr1_GL456221_random 34508 99 + 206961 GGCAAGTGTTGGAAGATGATAACGGCACCGCCCACTGTGGACACTTGCAAGGTCCAACCTCGGGAATAGGCACTGGACA----------CTGTCCCCAA---------AGTCT----GTTTC s rn5.chr9 92346562 103 + 121549591 GGCAAATGTGGGAGGATGATGACGACACTGCCCACCGTGGGCAAATGCAAGGTCCAACCTGGGGAACATGCACTGGACA----------CTGTCCCCAA---------AGCCTCTAACTTTC i rn5.chr9 C 0 C 0 s hg19.chr2 231084283 111 + 243199373 CACAATGGATAACAGATGA-------GCCGCCTATTGCGGGCAC-TGAAGGATCAGAGCTTAGGTGAGGGTAGAGGGCAAATCTCGGCTCCATTCACAATAACAGGCTGGACTC---TGGCG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464646 113 + 247518478 CACAATGGATAACAGATGA-------GCCGCCTATTGCGGGCAC-TGTAGGATCAGAGCTTAGGTGAGGGTAGAGGGCAAATCTCGGCTCCATTCGCAATAACAGGCTGGACTCTA-TGGCG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416818 113 + 131632457 CACATTGGATAACAGATGA-------GCCGCCTATTGCGGGCAG-TGTAGGATCAGAGCTTAGGTGAGGGTAGAGGGCAAATCTCGGCTCCATTCACAATAACAGGCTGGACTCTA-TGGCG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620323 113 + 6458163 CACAATGGGTAACAGATGA-------GCCGCCTATTGCGGGCAG-TGTAGGATCAGAGCTTAGGTGAGGGTAGAGGGCAAATCTCGGTTCCATTCACAATAACAGGCTGGACTCTA-TGGCG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016622 113 + 106825570 CACAACGGATAACAGATGA-------GCTGCCTATTGCCGGCAG-TGTAGGATGAGAACTTAGGTGAGGGTAGAGGGCAAATCTCGGTTCCATTCACAGTAACAGGCTGGACTCTA-TGGCG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146690895 107 + 158406734 CACAATGGATAACAGATGA-------GCAGCC-ACTGTGGGC------AGGATCAGAGCTGAGGGGAGGGTAGAGGGCAAATCTCGGTTCCATTCACAGTAACAGGATAGACCCTA-TGGGG i calJac3.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 24663 433 - 53618 I e equCab2.chr6 17818933 131 + 84719076 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=5449.000000 s mm10.chr1_GL456221_random 34607 44 + 206961 AGAAAAAGA--G---------TCGTGTGTATAAACCC-------------------TCACTGCCCTCCCCTTTC------ s rn5.chr9 92346665 33 + 121549591 AGAAAAAGA--G---------TTGGGTGTATGGA-CC-------------------TCACTGC----------C------ i rn5.chr9 C 0 C 0 s hg19.chr2 231084394 23 + 243199373 AAAAAAAGA--G---------GTGTCAGTGTT---CC------------------------------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464759 23 + 247518478 AAAAAAAGA--G---------GTGTCAGTGTT---CC------------------------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119416931 23 + 131632457 AAAAAAAGA--G---------GTATCAGTGTT---CC------------------------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620436 23 + 6458163 AAAAAAAGA--G---------GTATCAGTGTT---CC------------------------------------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016735 23 + 106825570 AAAAAAAGA--G---------GTGTCAGTGTT---CC------------------------------------------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146691002 44 + 158406734 AAAAAAGAGTTG---------TTGTCTGTTTT---CCCTCCATGGCCCTCCTTTTC------------------------ i calJac3.chr6 C 0 I 97 s equCab2.chr6 17819064 38 + 84719076 GAAAAAAGA--GTTGAGCTGTGTGTCTGCTTC---CC-------------------------------------CCCTGC i equCab2.chr6 I 131 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 24663 433 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=42444.000000 s mm10.chr1_GL456221_random 34651 28 + 206961 CTCCCCTTCCTCCCTCTTATCCACCTCC s rn5.chr9 92346698 28 + 121549591 CTCCCCTCCCTTCCTCTTATCCACATCC i rn5.chr9 C 0 C 0 s hg19.chr2 231084417 28 + 243199373 CTCCATGTGCCCCCTTTTAACAGTCTCC i hg19.chr2 C 0 I 90 s panTro4.chr2B 235464782 28 + 247518478 CTCCATGTGCCCCCTTTTAACAGTCTCC i panTro4.chr2B C 0 I 90 s gorGor3.chr2B 119416954 28 + 131632457 CTCCATGTGCCCCCTTTTAACAGTCTCC i gorGor3.chr2B C 0 I 90 s nomLeu2.GL397366 3620459 28 + 6458163 CTCCATGTGCCCCCTTTTAACAGTCTCC i nomLeu2.GL397366 C 0 I 90 s rheMac3.chr12 94016758 28 + 106825570 CTCCATGTGCCCCCTTTTAACAGTCTCC i rheMac3.chr12 C 0 I 108 s equCab2.chr6 17819102 26 + 84719076 --GTCTGTCCTTCTTTTTAACAAGCTCC i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 24663 433 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e calJac3.chr6 146691046 97 + 158406734 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=2301.000000 s mm10.chr1_GL456221_random 34679 95 + 206961 ACTCCAGGGTCCGAGCCAGGATCCGGAGCCATGCTCGA-GTCTCTGGACAAGATTACTTAGCAAAGAGAGAACCTGG----GGAGTCTAGGGTACAGCAG- s rn5.chr9 92346726 70 + 121549591 ACTCCAGGG-------------------------TCGA-GTCTCTGGAAAGGATTACTTAACAAAGAGAGAGCCTGG----GGACTCTCGGGTACAGCAG- i rn5.chr9 C 0 C 0 s equCab2.chr6 17819128 88 + 84719076 -------------CATTAGATCCCACTTACCCTCTCTACCTCTTTAGAAAGCACTATTTTGTGAAGAGAGCGCCTAACTTTAAATAGTTGAGTTCCGCCCT i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 24663 433 - 53618 I e rheMac3.chr12 94016786 108 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3620487 90 + 6458163 I e gorGor3.chr2B 119416982 90 + 131632457 I e panTro4.chr2B 235464810 90 + 247518478 I e hg19.chr2 231084445 90 + 243199373 I e calJac3.chr6 146691046 97 + 158406734 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=247.000000 s mm10.chr1_GL456221_random 34774 2 + 206961 AC s rn5.chr9 92346796 2 + 121549591 AT i rn5.chr9 C 0 C 0 s calJac3.chr6 146691143 2 + 158406734 AT i calJac3.chr6 I 97 C 0 s equCab2.chr6 17819216 2 + 84719076 GC i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 24663 433 - 53618 I e rheMac3.chr12 94016786 108 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e nomLeu2.GL397366 3620487 90 + 6458163 I e gorGor3.chr2B 119416982 90 + 131632457 I e panTro4.chr2B 235464810 90 + 247518478 I e hg19.chr2 231084445 90 + 243199373 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=11230.000000 s mm10.chr1_GL456221_random 34776 12 + 206961 AAAAGCTG-----ACCC s rn5.chr9 92346798 12 + 121549591 AAAAGCTG-----ACCC i rn5.chr9 C 0 C 0 s hg19.chr2 231084535 15 + 243199373 AAGAGCTGCAGTCAC-- i hg19.chr2 I 90 C 0 s panTro4.chr2B 235464900 15 + 247518478 AAGAGCTGCAGTCAC-- i panTro4.chr2B I 90 C 0 s gorGor3.chr2B 119417072 15 + 131632457 AAGAGCTGCAGTCAC-- i gorGor3.chr2B I 90 C 0 s nomLeu2.GL397366 3620577 15 + 6458163 AAGAGCTGCAGTCAC-- i nomLeu2.GL397366 I 90 C 0 s calJac3.chr6 146691145 15 + 158406734 AAAAGCTGTAGTCAC-- i calJac3.chr6 C 0 C 0 s equCab2.chr6 17819218 8 + 84719076 ---AGCTGCTG------ i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 24663 433 - 53618 I e rheMac3.chr12 94016786 108 + 106825570 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=156251.000000 s mm10.chr1_GL456221_random 34788 131 + 206961 -CAAGA--------ATCAG-----------------GAATCTAGTTGCAGAGCCCAAGAGCAGAATGCACCTGGATGCTG--GGGGCTGCCACGGGTTCTCCTGAGTTC-------TCCCAGG--------------------TCACTGCCTGGATTAGTTAAGGGGTTCCTGGATCCTTCCTGGA s rn5.chr9 92346810 130 + 121549591 -CAAGA--------ATCTG-----------------GAATCTAGCTGCAGAGCCCAAGAGCAGAACGCACCTGGATGCCG--GGTTGCCAACGGGGATCTCCCAGGTTC-------TCCCAGG--------------------TCACT-CCAGGATTAATTAAGAGGTTCCTGGATCCTGCCTGGA i rn5.chr9 C 0 C 0 s hg19.chr2 231084550 120 + 243199373 -CAAGA--------GCGAA-----------------GAATAAAGCAGCAAAGACAGA------AACTCACCTGGACTTTG--AGTTT-------GTCGTTCCTGCCCCT-------TTCCAGG------GGCTGGGACAGGGATCACT-CCT-CAAGATTGGGAGAGTTACAG----------GGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235464915 120 + 247518478 -CAAGA--------GCGAA-----------------GAATAAAGCAGCAAAGACAGA------AACTCACCTGGACTTTG--AGTTT-------GTCGTTCCTGCCCCT-------TTCCGGG------GGCTGGGACAGGGATCACT-CCT-CAAGATTGGGAGAGTTACAG----------GGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119417087 120 + 131632457 -CAAGA--------GCGAA-----------------GAATAAAGCAGCAAAGACAGA------AACTCACCTGGACTTTG--AGTTT-------GTCGTTCCTGCCCCT-------TTCCAGG------GGCTGGGACAGGGATCACT-CCT-CAAGATTGGGAGACTTACAG----------GGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620592 121 + 6458163 -CAAGA--------GCGAA-----------------GAATAAAGCAGCAAAGACAGA------AACTCACCTGGACTTCG--AGTTT-------GTCGTTCCTGCCCCT-------TTCCAGG------GGCTGGGACAGGGATCACT-CCTGGAAGATTGGAAGAGTTACAG----------GGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94016894 121 + 106825570 -CAAGG--------GCGAA-----------------GAATAAAGCAGCAAACACAGA------AACTCACCTGGACTTTG--AGTTT-------GTCGTTCCTGCCCCT-------TTCCAGG------AGCTGGGCCGGGGATCACT-CTTCGAAGATTGGGAGAGTTACAG----------GGA i rheMac3.chr12 I 108 C 0 s calJac3.chr6 146691160 128 + 158406734 -CAAGA--------GCGAA-----------------GAATAAAGCAGCAAAGACAGA------AACTCACCTCGACGCTG--GGCTT-------GTTGTTCCTGCCCTTTTCCAGGTTCCAGG------GACTGGGCCAGGGATCACT-CCTGAAAGACTGGGAGATTTACGG----------GGA i calJac3.chr6 C 0 C 0 s equCab2.chr6 17819226 134 + 84719076 CCAGGAAATTAATTGTGAAAGCCCAATTACCAAAATGAACAAAGCAGCTGAGCCAAA------AACCCACCTGGATGCTGTTAGCCA-------GCTGCTCTTGCCCCT-------TTCCAGGTCCAGCGGCTGGGCCCGGGATCACT-CCTGGA------------------------------- i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 24663 433 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-760.000000 s mm10.chr1_GL456221_random 34919 12 + 206961 ---AAAGCCTGACAG s rn5.chr9 92346940 12 + 121549591 ---AAAGCCAGCCAG i rn5.chr9 C 0 C 0 s hg19.chr2 231084670 8 + 243199373 ---GATGCTAG---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235465035 8 + 247518478 ---GATGCTAG---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119417207 8 + 131632457 ---GATGCTAG---- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3620713 8 + 6458163 ---GATGCCAG---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94017015 8 + 106825570 ---GATGGTAG---- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146691288 8 + 158406734 ---GATGCCAG---- i calJac3.chr6 C 0 C 0 s turTru2.JH490333 25096 11 - 53618 AGGGCAGGGAG---- i turTru2.JH490333 I 433 I 322 s equCab2.chr6 17819360 10 + 84719076 -AGACTGAGAG---- i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=195030.000000 s mm10.chr1_GL456221_random 34931 120 + 206961 ----------------CCCAGTCTGGACCCGAAGT-TATGCTGCCTTGGAAGTCCCGCGGGGAGTCAGGCTTC-AAGAAAAGAAAAAGGAAAGTGATCTCAGCACACTGAGCAGGAAGCCAGCTGGCCATGCC---AATTC-- s rn5.chr9 92346952 107 + 121549591 ----------------CCTAGTCTGGACCCGAAGT---------CCTAGAAGCACCGAGAGGAGTCAAGTTTC-AAGAAAAG-AAAACGAAAGTGATCTCAGCACACAGAACAGGAAGCC----GGACACGCC---AATCC-- i rn5.chr9 C 0 C 0 s hg19.chr2 231084678 116 + 243199373 ------------------CAGGCAAAACAGGAAGTCTGTGCT--TTGACAAACGCAGTAAGGGGCCGGGCTTCCGAGAAAAGAAAAGTGAAAGTTTTCGGAGTTTGCCAAGCCGGAAGCTGA--AGGCAGGTC---GGTGC-- i hg19.chr2 C 0 I 4 s panTro4.chr2B 235465043 116 + 247518478 ------------------CAGGCAAAACAGGAAGTCTGTGCT--TTGACAAACGCAGTAAGGGGCCGGGCTTCCGAGAAAAGAAAAGTGAAAGTTTTCGGAGTTTGCCAAGCCGGAAGCTGA--AGGCAGGTC---GGTGC-- i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119417215 116 + 131632457 ------------------CAGGCAAAACAGGAAGTCTGTGCT--TTGACAAACGCAGTAAGGGGCCAGGCTTCCGAGAAAAGAAAAGTGAAAGTTTTCGGAGTTTGCCAAGCCGGAAGCTGA--AGGCAGGTC---GGTGC-- i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 3620721 116 + 6458163 ------------------CAGGCAAAACAGGAAGTCTGTGCT--TTGACAAACGCAGTAAGGGGCCGGGCTTCCGAGAAAAGAAAAGTGAAAGTTTTCGGAGTTTGCCAAGCAGGAAGCTGA--AGGCAGGTC---GGTGC-- i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94017023 116 + 106825570 ------------------CAGGCAAAACAGGAAGTCCGTGCT--TTGACAAACGCAGTAAGGGGCCGGGCTTCAGAGAAAAGAAAAGTGAAAGTTTTCGGAGTTTGCCAAGCAGGAAGCTGA--AGGCAGGTC---AGTGC-- i rheMac3.chr12 C 0 I 4 s calJac3.chr6 146691296 116 + 158406734 ------------------CAGGCAAAACAGGAAGTCTGTGCT--TTGATACACGCAGTACGGGGCCAGTCTTCGGAGAAAAGAAAAGTGAAACTGTTTGGAGTTTGCCAAGCAGGAAGCTGA--AGGCAGGTC---AGTGC-- i calJac3.chr6 C 0 I 4 s equCab2.chr6 17819370 138 + 84719076 AATAGCAAAGAGATGAAGTGGGTGAAACCGGAAGTCTGTGCT--TGGCCACAGGCAA-GGTGGGCGAGGCTTCTGAAAAAAGAAAAGTGAAACTATTTGGAGCACGTTGGGCAGGAAGCTGA--AGGCAGGGCTGGAGTGTTT i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e tarSyr1.scaffold_28366 11426 5614 + 22953 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=1263.000000 s mm10.chr1_GL456221_random 35051 1 + 206961 A s rn5.chr9 92347059 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231084798 1 + 243199373 A i hg19.chr2 I 4 I 3 s panTro4.chr2B 235465163 1 + 247518478 A i panTro4.chr2B I 4 I 3 s gorGor3.chr2B 119417335 1 + 131632457 A i gorGor3.chr2B I 4 I 3 s nomLeu2.GL397366 3620841 1 + 6458163 A i nomLeu2.GL397366 I 4 I 3 s rheMac3.chr12 94017143 1 + 106825570 A i rheMac3.chr12 I 4 I 3 s calJac3.chr6 146691416 1 + 158406734 A i calJac3.chr6 I 4 I 3 s tarSyr1.scaffold_28366 17040 1 + 22953 A i tarSyr1.scaffold_28366 I 5614 N 0 s equCab2.chr6 17819508 1 + 84719076 G i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=14149.000000 s mm10.chr1_GL456221_random 35052 17 + 206961 -----GCCCTCC-------ACTCCTCCAC s rn5.chr9 92347060 24 + 121549591 -----GCCCTCCACCCCCAACCCCTCCAC i rn5.chr9 C 0 C 0 s hg19.chr2 231084802 15 + 243199373 -----TCTCTCC-------ACCTCCTC-- i hg19.chr2 I 3 C 0 s panTro4.chr2B 235465167 15 + 247518478 -----TCTCTCC-------ACCTCCTC-- i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119417339 15 + 131632457 -----TCTCTCC-------ACCTCCTC-- i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3620845 15 + 6458163 -----TCTCTCC-------ACCTCCTC-- i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94017147 15 + 106825570 -----TCTCTCC-------ACCTCCTC-- i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146691420 7 + 158406734 -----TCTCTCC----------------- i calJac3.chr6 I 3 C 0 s equCab2.chr6 17819509 17 + 84719076 CTGCCTCTCTCC-------CCCTC----- i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e papHam1.scaffold15394 24986 1117 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-8253.000000 s mm10.chr1_GL456221_random 35069 6 + 206961 C-------CCTGC--- s rn5.chr9 92347084 13 + 121549591 CCCTATCTCCTGC--- i rn5.chr9 C 0 C 0 s hg19.chr2 231084817 4 + 243199373 ---------ATGG--- i hg19.chr2 C 0 I 3 s panTro4.chr2B 235465182 4 + 247518478 ---------ATGG--- i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119417354 4 + 131632457 ---------ATGG--- i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 3620860 4 + 6458163 ---------ATGG--- i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94017162 4 + 106825570 ---------ATGG--- i rheMac3.chr12 C 0 I 3 s papHam1.scaffold15394 26103 4 - 58077 ---------ATGG--- i papHam1.scaffold15394 I 1117 I 149 s calJac3.chr6 146691427 4 + 158406734 ---------ACCT--- i calJac3.chr6 C 0 I 11 s equCab2.chr6 17819526 6 + 84719076 ----------TGGACG i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=165469.000000 s mm10.chr1_GL456221_random 35075 100 + 206961 CTTGTGCGGTTCC--------CCAGCGTGGTTAGCATTATGGGTTTCAG---G-----GGCATTTGCTGGGAATCCAGATCTGCCTGGAGTG----ATGT-GAGAGGCAGGGAGGCAAAGG s rn5.chr9 92347097 99 + 121549591 CTTGTGAGGCTTC--------CCAGCATGGTTAGAATTCTGGGTTTCAG---T-----GGCA-TTACTGGGAATCCAGATCTGCCCGGAGTG----GAGT-GACAGGCAGGGAGGCTAAGG i rn5.chr9 C 0 C 0 s hg19.chr2 231084824 103 + 243199373 CTTGTGAGGCTCC--------CAGGACGTCTTGGCAGTTGGGGTTTGGGGGAG-----GGCG--TGTTGCCAGTTGGGATCAGCCCAGAGAGGGAGGTAT-GGGAGG--AGGAGGCATAAG i hg19.chr2 I 3 I 2 s panTro4.chr2B 235465189 103 + 247518478 CTTGTGAGGCTCC--------CAGGACGTCTTGGCAGTTGGGGTTTGGGGGAG-----GGCG--TGTTGCCAGTTGGGATCAGCCCAGAGAGAGAGGTAT-GGGAGG--AGGAGACATAAG i panTro4.chr2B I 3 I 2 s gorGor3.chr2B 119417361 103 + 131632457 CTTGTGAGGCTCC--------CAGGACGTCTTGGCAGTTGGGGTTTGGGGGAG-----GGCG--TGTTGCCAGTTGGGATCAGCCCAGAGAGAGAGGTAT-GGGAGG--AGGAGGCATAAG i gorGor3.chr2B I 3 I 2 s nomLeu2.GL397366 3620867 98 + 6458163 CTTGTAAGGCTCC--------CAGGACGTCTTGGCAGTTGGGGTTTGGGGGAG-----GGCG--TGTTGCCAGTTGGGATCAGCACAGAGA-----GTAT-GGGAGG--AGGAGGCATAGG i nomLeu2.GL397366 I 3 I 1999 s rheMac3.chr12 94017169 103 + 106825570 CTTGTGAGGCTCC--------CGGGACGTCTCGGCAGTTGGGGTTTGGGGGCG-----GGCG--TGCTGCCAGTTGGGATCAGCCCAGAGAGAGGCGTAT-GGGAGG--AGGAGGCATAGG i rheMac3.chr12 I 3 I 2 s calJac3.chr6 146691442 103 + 158406734 CTTGTGAGGCTCT--------CAGGGTGTCTTGGCAGTTGGGGTTTGGGGGAG-----GGCA--TGTTGCCAGTTGGGATCGGCCCAGAGAGCGGGGTAT-GGGAGG--AGGGGGCATTGG i calJac3.chr6 I 11 I 2 s equCab2.chr6 17819532 116 + 84719076 CTTGTGAGATCCCAGGGGTTTCAGGGATTGCGGGCGGCGGGGGGGGGAGGGGGAGGACGGGG--TACTGCCAATCAGGACCAGCCTGG-GAGGGGTGTACAGAGAGG--AGGAGGCATAGG i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e papHam1.scaffold15394 26107 149 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=30629.000000 s mm10.chr1_GL456221_random 35175 33 + 206961 --ATTAACACTGGAGAGCATGGGAAGGGTGTGTCC s rn5.chr9 92347196 32 + 121549591 --ACCAGCATTGGAAAACAC-GGAAGGGGGTGTCC i rn5.chr9 C 0 C 0 s hg19.chr2 231084929 33 + 243199373 --TACAGCCCCAGCGGCAATAGGAACTGGGAACTC i hg19.chr2 I 2 I 1 s panTro4.chr2B 235465294 33 + 247518478 --TACAGCCCCAGCGGCAATAGGAACTGGGAACTC i panTro4.chr2B I 2 I 1 s gorGor3.chr2B 119417466 33 + 131632457 --TACAGCCCCAGCGGCAATAGGAACTGGGAACTC i gorGor3.chr2B I 2 I 1 s rheMac3.chr12 94017274 33 + 106825570 --TCCAGCCCCAGCGGCAGTGGGAACGGGGAACTC i rheMac3.chr12 I 2 I 1 s calJac3.chr6 146691547 33 + 158406734 --TCCAGCCCCTGCAGCAGTGGGAACTGGGAACCC i calJac3.chr6 I 2 C 0 s equCab2.chr6 17819648 35 + 84719076 GGTCCAGCCCCAGGGTCCTGGGAGTCTGGGAATCC i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e papHam1.scaffold15394 26107 149 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-12719.000000 s mm10.chr1_GL456221_random 35208 3 + 206961 AC--T----- s rn5.chr9 92347228 3 + 121549591 AC--T----- i rn5.chr9 C 0 C 0 s hg19.chr2 231084963 2 + 243199373 GC-------- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235465328 2 + 247518478 GC-------- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119417500 2 + 131632457 GC-------- i gorGor3.chr2B I 1 C 0 s rheMac3.chr12 94017308 2 + 106825570 GC-------- i rheMac3.chr12 I 1 C 0 s papHam1.scaffold15394 26256 3 - 58077 ACT------- i papHam1.scaffold15394 I 149 I 17356 s calJac3.chr6 146691580 3 + 158406734 AC-C------ i calJac3.chr6 C 0 C 0 s equCab2.chr6 17819683 7 + 84719076 AC---CATCT i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=7294.000000 s mm10.chr1_GL456221_random 35211 3 + 206961 GTC s rn5.chr9 92347231 3 + 121549591 GTC i rn5.chr9 C 0 C 0 s hg19.chr2 231084965 3 + 243199373 GTC i hg19.chr2 C 0 I 5 s panTro4.chr2B 235465330 3 + 247518478 GTC i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 119417502 3 + 131632457 GTC i gorGor3.chr2B C 0 I 5 s rheMac3.chr12 94017310 3 + 106825570 GTC i rheMac3.chr12 C 0 I 5 s calJac3.chr6 146691583 3 + 158406734 GTC i calJac3.chr6 C 0 I 5 s equCab2.chr6 17819690 3 + 84719076 GCC i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212364380 19287 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-5599.000000 s mm10.chr1_GL456221_random 35214 1 + 206961 -C s rn5.chr9 92347234 1 + 121549591 -G i rn5.chr9 C 0 C 0 s hg19.chr2 231084973 1 + 243199373 -G i hg19.chr2 I 5 C 0 s panTro4.chr2B 235465338 1 + 247518478 -G i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 119417510 1 + 131632457 -G i gorGor3.chr2B I 5 C 0 s rheMac3.chr12 94017318 1 + 106825570 -G i rheMac3.chr12 I 5 C 0 s calJac3.chr6 146691591 1 + 158406734 -G i calJac3.chr6 I 5 C 0 s felCat5.chrC1 212383667 1 + 221441202 T- i felCat5.chrC1 I 19287 I 32 s equCab2.chr6 17819693 1 + 84719076 T- i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e papHam1.scaffold15394 26259 17356 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=14532.000000 s mm10.chr1_GL456221_random 35215 11 + 206961 -CCTTCCTAACC s rn5.chr9 92347235 11 + 121549591 -CCTTCCCAACC i rn5.chr9 C 0 I 346 s hg19.chr2 231084974 10 + 243199373 -CTTCCCTAAC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235465339 10 + 247518478 -CTTCCCTAAC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119417511 10 + 131632457 -CTTCCCTAAC- i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94017319 10 + 106825570 -CTTCCCTACC- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146691592 10 + 158406734 -CTTCCCTACC- i calJac3.chr6 C 0 C 0 s equCab2.chr6 17819694 11 + 84719076 GCTTCCCTACC- i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383668 32 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=1512.000000 s mm10.chr1_GL456221_random 35226 4 + 206961 CCCA------ s hg19.chr2 231084984 4 + 243199373 CACA------ i hg19.chr2 C 0 I 4 s panTro4.chr2B 235465349 4 + 247518478 CACA------ i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119417521 4 + 131632457 CACA------ i gorGor3.chr2B C 0 I 4 s rheMac3.chr12 94017329 4 + 106825570 CACA------ i rheMac3.chr12 C 0 I 1961 s calJac3.chr6 146691602 4 + 158406734 CGCA------ i calJac3.chr6 C 0 C 0 s equCab2.chr6 17819705 8 + 84719076 --CATCTCTA i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383668 32 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92347246 346 + 121549591 I a score=-1056.000000 s mm10.chr1_GL456221_random 35230 2 + 206961 AT- s hg19.chr2 231084992 1 + 243199373 -T- i hg19.chr2 I 4 I 1 s panTro4.chr2B 235465357 1 + 247518478 -T- i panTro4.chr2B I 4 I 1 s gorGor3.chr2B 119417529 1 + 131632457 -T- i gorGor3.chr2B I 4 I 1 s calJac3.chr6 146691606 2 + 158406734 GT- i calJac3.chr6 C 0 I 3195 s equCab2.chr6 17819713 2 + 84719076 -TT i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e rheMac3.chr12 94017333 1961 + 106825570 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383668 32 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92347246 346 + 121549591 I a score=910.000000 s mm10.chr1_GL456221_random 35232 1 + 206961 T s hg19.chr2 231084994 1 + 243199373 T i hg19.chr2 I 1 C 0 s panTro4.chr2B 235465359 1 + 247518478 T i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119417531 1 + 131632457 T i gorGor3.chr2B I 1 C 0 s equCab2.chr6 17819715 1 + 84719076 T i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e rheMac3.chr12 94017333 1961 + 106825570 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383668 32 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92347246 346 + 121549591 I a score=5134.000000 s mm10.chr1_GL456221_random 35233 5 + 206961 CCCCA s rn5.chr9 92347592 5 + 121549591 CCCCC i rn5.chr9 I 346 C 0 s hg19.chr2 231084995 5 + 243199373 TCCCA i hg19.chr2 C 0 I 1585 s panTro4.chr2B 235465360 5 + 247518478 TCCCA i panTro4.chr2B C 0 I 1974 s gorGor3.chr2B 119417532 5 + 131632457 TCCCA i gorGor3.chr2B C 0 I 2475 s equCab2.chr6 17819716 5 + 84719076 CCCCA i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e rheMac3.chr12 94017333 1961 + 106825570 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383668 32 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=32.000000 s mm10.chr1_GL456221_random 35238 2 + 206961 CC s rn5.chr9 92347597 2 + 121549591 AC i rn5.chr9 C 0 C 0 s equCab2.chr6 17819721 2 + 84719076 TC i equCab2.chr6 C 0 I 3169 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e rheMac3.chr12 94017333 1961 + 106825570 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e gorGor3.chr2B 119417537 2475 + 131632457 I e panTro4.chr2B 235465365 1974 + 247518478 I e hg19.chr2 231085000 1585 + 243199373 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383668 32 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=491.000000 s mm10.chr1_GL456221_random 35240 5 + 206961 CCCAG s rn5.chr9 92347599 5 + 121549591 CCCAG i rn5.chr9 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25107 322 - 53618 I e rheMac3.chr12 94017333 1961 + 106825570 I e equCab2.chr6 17819723 3169 + 84719076 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e gorGor3.chr2B 119417537 2475 + 131632457 I e panTro4.chr2B 235465365 1974 + 247518478 I e hg19.chr2 231085000 1585 + 243199373 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383668 32 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=531.000000 s mm10.chr1_GL456221_random 35245 2 + 206961 GA s rn5.chr9 92347604 2 + 121549591 GA i rn5.chr9 C 0 C 0 s turTru2.JH490333 25429 2 - 53618 GA i turTru2.JH490333 I 322 I 3150 s felCat5.chrC1 212383700 2 + 221441202 GC i felCat5.chrC1 I 32 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e rheMac3.chr12 94017333 1961 + 106825570 I e equCab2.chr6 17819723 3169 + 84719076 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e gorGor3.chr2B 119417537 2475 + 131632457 I e panTro4.chr2B 235465365 1974 + 247518478 I e hg19.chr2 231085000 1585 + 243199373 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=29.000000 s mm10.chr1_GL456221_random 35247 1 + 206961 T s rn5.chr9 92347606 1 + 121549591 C i rn5.chr9 C 0 C 0 s felCat5.chrC1 212383702 1 + 221441202 T i felCat5.chrC1 C 0 I 5372 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25431 3150 - 53618 I e rheMac3.chr12 94017333 1961 + 106825570 I e equCab2.chr6 17819723 3169 + 84719076 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e gorGor3.chr2B 119417537 2475 + 131632457 I e panTro4.chr2B 235465365 1974 + 247518478 I e hg19.chr2 231085000 1585 + 243199373 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=20539.000000 s mm10.chr1_GL456221_random 35248 304 + 206961 ACCCACGAGGCCTCTGGGACTTTAGATTTGAACCAAGGCTAGCCC-ACACAGGACAGAGCTTCTCTGTACTTCCTATGGAGACA----CCGACGGTAGAATTTGCAGCCAAGTACAGTTAGAACAGTAGGCTTGGCCCAGAGTGTCCCAGGGATGGGGACTGAGTGTGCA--------------------TTAATGCTtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtttgtgtgtgAGTCTGCACAAGAATCACAAGCATGCTTATGTGTCAGAAAATTACCCTACCCTCGAGAAACCTCTAAAGCAAG s rn5.chr9 92347607 323 + 121549591 ATCCATGAAGCCTCTGGGGCTTTAGATTTGAACCAAGGCTGGCCCTCCACAGGACAGAG--TCTCTGTACTTCCTATGGGGACATATACCAATGGTAGAATTTGCAGTCAAGTACAGTCAGAGCAGTAGGCTTGGCGCAGAGTGTCTCAGGGATGGGGACTGAGGGAGGAAGGAAACAAGGCAAGTCTGGTTAATACA---gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatgtctgtCTGCACAAGAATCACAAGTATGCTTATGAGCCAGAAAATTACCC-ACCCTCGAGAAACCTTTAAAGCAGG i rn5.chr9 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25431 3150 - 53618 I e rheMac3.chr12 94017333 1961 + 106825570 I e equCab2.chr6 17819723 3169 + 84719076 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e gorGor3.chr2B 119417537 2475 + 131632457 I e panTro4.chr2B 235465365 1974 + 247518478 I e hg19.chr2 231085000 1585 + 243199373 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=7262.000000 s mm10.chr1_GL456221_random 35552 56 + 206961 AAAAGTTATTACAT------CAGACAGATATGAATAAGGGC-AAAGAT-TTCATTTGGAGTCAC s rn5.chr9 92347930 56 + 121549591 AAAAACTCTTACAT------CAGACAGATGTGAATAAGGGC-AAAGGT-TTTATTGGGAGCCGC i rn5.chr9 C 0 C 0 s hg19.chr2 231086585 64 + 243199373 AAAAATTGTTACATGAAAAAAAGACAGCTGCGAATGAGGATGAAAGATGTTTATTCTAAGCCAT i hg19.chr2 I 1585 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25431 3150 - 53618 I e rheMac3.chr12 94017333 1961 + 106825570 I e equCab2.chr6 17819723 3169 + 84719076 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e gorGor3.chr2B 119417537 2475 + 131632457 I e panTro4.chr2B 235465365 1974 + 247518478 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=2512.000000 s mm10.chr1_GL456221_random 35608 6 + 206961 ACATAC s rn5.chr9 92347986 6 + 121549591 ACATAC i rn5.chr9 C 0 C 0 s hg19.chr2 231086649 6 + 243199373 ATATGC i hg19.chr2 C 0 I 1 s rheMac3.chr12 94019294 6 + 106825570 aCATGC i rheMac3.chr12 I 1961 I 1 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25431 3150 - 53618 I e equCab2.chr6 17819723 3169 + 84719076 I e nomLeu2.GL397366 3620965 1999 + 6458163 I e gorGor3.chr2B 119417537 2475 + 131632457 I e panTro4.chr2B 235465365 1974 + 247518478 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-1106.000000 s mm10.chr1_GL456221_random 35614 3 + 206961 TAG s rn5.chr9 92347992 3 + 121549591 TGA i rn5.chr9 C 0 C 0 s hg19.chr2 231086656 2 + 243199373 Tg- i hg19.chr2 I 1 I 316 s panTro4.chr2B 235467339 2 + 247518478 TG- i panTro4.chr2B I 1974 I 1 s gorGor3.chr2B 119420012 2 + 131632457 TG- i gorGor3.chr2B I 2475 I 1 s nomLeu2.GL397366 3622964 2 + 6458163 TG- i nomLeu2.GL397366 I 1999 I 1 s rheMac3.chr12 94019301 2 + 106825570 TG- i rheMac3.chr12 I 1 I 1 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25431 3150 - 53618 I e equCab2.chr6 17819723 3169 + 84719076 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=162255.000000 s mm10.chr1_GL456221_random 35617 150 + 206961 GACTACAGTAATGATGGTAAAACCTCACCTGG----TATTTCACAC-CACGTGAGAGCTCATT-----------AGACTTAT--AC------GTTTAACACAGTTTTA----------AAGATGCATTTACCTAAAGTGATGATTTTGGTGAACTTTACCAAATATAATCATGCCACAGTGATC s rn5.chr9 92347995 166 + 121549591 GAACACGGTAATGATGGTAAAACCTCACCTGGCTGGTAATTCCCAC-CAAATGAGAGCCTATT-----------AGAATTACCCAT------TTTTAGCACGGTTTTATTAGATACGTAAGATGCCTTCATTTAAAGTGATGATTTTGGTGAACTTTACCACATATTATCATGCCACAGTGATC i rn5.chr9 C 0 C 0 s hg19.chr2 231086974 159 + 243199373 GAACATGGTAATAATGGGAAAACGTCACCTGT----TAATTCACATGCTAGTGATTATGTACTGAGA-------TAAATTATACATAATtctttttagctccatttta-ttgaggtataaaatttattcatt----gtaat-------gtacattttaccaaatgtagt--tactacaccagtc i hg19.chr2 I 316 I 293 s panTro4.chr2B 235467342 159 + 247518478 GAACATGGTAATAATTGGAAAACGTCACCTGT----TAATTCACATGCTAGTGATTATGTACTGAGA-------TAAATTATACATAATtctttttagctccatttta-ttgaggtataaaatttattcatt----gtaat-------gtacattttaccaaatgtagt--tactacaccagtc i panTro4.chr2B I 1 I 3 s gorGor3.chr2B 119420015 159 + 131632457 GAACATGGTAATAATGGGAAAACTTCACCTGT----TAATTCACATGCTAGTGATTATGTACTGAGA-------TAAATTATACATAATTCTTTTTAGCTCCATTTTA-TTGAGGTATAAAATTTATTCATT----GTAAT-------GTACATTTTACCAAATGTAGT--TACTACACCAGTC i gorGor3.chr2B I 1 I 3 s nomLeu2.GL397366 3622967 159 + 6458163 GAACATGGTAATAATGGGAAAACCTCACCTGT----TAATTCACATGCTAGTGATTATGTACTGCGA-------TAAATTATATATAATtctttttagctccatttta-ttgaggtataaaatttattcatt----gtaat-------gtacattttaccaaatgtaat--tactacaccagtc i nomLeu2.GL397366 I 1 I 3 s rheMac3.chr12 94019304 166 + 106825570 CAATATGGTAATAATGGGAAAACCTCACCTGT----TAATTCACATGCTAGTGATTAAGTACTGAGAATCTATTAAAATTATATACAATTCTTTTTAGCTTCAGTTTA-TTGAGGTATAAAATTTATTCATT----GTAAT-------GTACATTTTACCAAATGTAAG--TACTACACCAGTC i rheMac3.chr12 I 1 I 3 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25431 3150 - 53618 I e equCab2.chr6 17819723 3169 + 84719076 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=13649.000000 s mm10.chr1_GL456221_random 35767 10 + 206961 ACACAGGCCA s rn5.chr9 92348161 10 + 121549591 ACACAAGCCA i rn5.chr9 C 0 C 0 s hg19.chr2 231087426 10 + 243199373 atacagacca i hg19.chr2 I 293 C 0 s panTro4.chr2B 235467504 10 + 247518478 atgtagacca i panTro4.chr2B I 3 I 3386 s gorGor3.chr2B 119420177 10 + 131632457 ATGTAGACCA i gorGor3.chr2B I 3 I 2363 s nomLeu2.GL397366 3623129 10 + 6458163 atgtagacca i nomLeu2.GL397366 I 3 I 2357 s rheMac3.chr12 94019473 10 + 106825570 ATGCAGACCA i rheMac3.chr12 I 3 I 15 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25431 3150 - 53618 I e equCab2.chr6 17819723 3169 + 84719076 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=515.000000 s mm10.chr1_GL456221_random 35777 35 + 206961 AGTCCTCTGCCCTCCTAAAA---TCCCCTTG-TTCTTGG s rn5.chr9 92348171 33 + 121549591 AGTCCTCTGCCCCCCTAAAA---TCCCCTT---TCTTGG i rn5.chr9 C 0 C 0 s hg19.chr2 231087436 35 + 243199373 tttctgttac---cctagaaagttccctgtgacctttg- i hg19.chr2 C 0 C 0 s rheMac3.chr12 94019498 31 + 106825570 Agtcgcttgc--gcctataa---tccctgca--ttttg- i rheMac3.chr12 I 15 I 2013 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25431 3150 - 53618 I e equCab2.chr6 17819723 3169 + 84719076 I e nomLeu2.GL397366 3623139 2357 + 6458163 I e gorGor3.chr2B 119420187 2363 + 131632457 I e panTro4.chr2B 235467514 3386 + 247518478 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=15766.000000 s mm10.chr1_GL456221_random 35812 182 + 206961 CAGAAAACCCCCTCTCAGATTCCAGCCCCAGAG-AACCACAGATCATCGGTT-----ACACAGCTAAGTTTGACCGGCGCAGAAATGCC--------------ATATAAATGAAGACATAAAGTGTACTTTTTTTTGGTGTATGGCTTTGTTT---GCATCCCTGTACTCTTGGGA------CCTGTTCCTGCAGGTCAGTAATTTGTACC s rn5.chr9 92348204 172 + 121549591 CAGAAAACCCCTTCCCAGATTCCAGCCCTAGGGGAACCATGGATTGGTGGTT-----ACACAGCTAAGTCTGGCCGGGGTGGAGATGTC---------------TATAAATGAAGA---------TGACCTTTTTTGGTATGTGGTTTCATTT---GCATCCCTGTACTCTTGGGA------CCTGTTGCTGCAGG-AAGTAATTTGTTCC i rn5.chr9 C 0 C 0 s hg19.chr2 231087471 208 + 243199373 caaacaatcccctccttaaggccagcaccaggc-aaccactgatctgctttctatcaccacagattagtttcgtgtgtattaaagttttttttttttttttttttatcaatgaaggcacatggaatg--catttttggtgtatggctttcttttcctcatcatcatgcttttgagattcatctctgttgttgtgggtcagtaatttattct i hg19.chr2 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25431 3150 - 53618 I e rheMac3.chr12 94019529 2013 + 106825570 I e equCab2.chr6 17819723 3169 + 84719076 I e nomLeu2.GL397366 3623139 2357 + 6458163 I e gorGor3.chr2B 119420187 2363 + 131632457 I e panTro4.chr2B 235467514 3386 + 247518478 I e calJac3.chr6 146691608 3195 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=4073.000000 s mm10.chr1_GL456221_random 35994 21 + 206961 TCTTCAGCAGAGGTCTG-----AGCC s rn5.chr9 92348376 21 + 121549591 TCTTTAGCAGAGGTCTG-----AGCC i rn5.chr9 C 0 C 0 s hg19.chr2 231087679 21 + 243199373 tctttaGCA--GGtatg---ctagcc i hg19.chr2 C 0 I 1837 s calJac3.chr6 146694803 26 + 158406734 TCTTCACCACTGCTCTGTCACTGGCC i calJac3.chr6 I 3195 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25431 3150 - 53618 I e rheMac3.chr12 94019529 2013 + 106825570 I e equCab2.chr6 17819723 3169 + 84719076 I e nomLeu2.GL397366 3623139 2357 + 6458163 I e gorGor3.chr2B 119420187 2363 + 131632457 I e panTro4.chr2B 235467514 3386 + 247518478 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=930.000000 s mm10.chr1_GL456221_random 36015 12 + 206961 TGGAGCCCTGGA s rn5.chr9 92348397 12 + 121549591 TGGAGCCCTGCA i rn5.chr9 C 0 C 0 s calJac3.chr6 146694829 12 + 158406734 CTGGGTTCTACC i calJac3.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4100695 3298 - 10418462 I e turTru2.JH490333 25431 3150 - 53618 I e rheMac3.chr12 94019529 2013 + 106825570 I e equCab2.chr6 17819723 3169 + 84719076 I e nomLeu2.GL397366 3623139 2357 + 6458163 I e gorGor3.chr2B 119420187 2363 + 131632457 I e panTro4.chr2B 235467514 3386 + 247518478 I e hg19.chr2 231087700 1837 + 243199373 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=1146.000000 s mm10.chr1_GL456221_random 36027 2 + 206961 CA s rn5.chr9 92348409 2 + 121549591 CA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4103993 2 - 10418462 CA i speTri2.JH393335 I 3298 C 0 s calJac3.chr6 146694841 2 + 158406734 CA i calJac3.chr6 C 0 I 6 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 25431 3150 - 53618 I e rheMac3.chr12 94019529 2013 + 106825570 I e equCab2.chr6 17819723 3169 + 84719076 I e nomLeu2.GL397366 3623139 2357 + 6458163 I e gorGor3.chr2B 119420187 2363 + 131632457 I e panTro4.chr2B 235467514 3386 + 247518478 I e hg19.chr2 231087700 1837 + 243199373 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=25787.000000 s mm10.chr1_GL456221_random 36029 18 + 206961 GGCCCTCGTCCCTAGCCA s rn5.chr9 92348411 18 + 121549591 GGCCCTCATCCCTGGCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4103995 18 - 10418462 AGCCCCGTCCCGCAGGCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231089537 15 + 243199373 GGCTCTCATC---AGCCC i hg19.chr2 I 1837 C 0 s panTro4.chr2B 235470900 15 + 247518478 GGCTCTCATC---AGCCC i panTro4.chr2B I 3386 C 0 s gorGor3.chr2B 119422550 15 + 131632457 GGCTCTCATC---AGCCC i gorGor3.chr2B I 2363 C 0 s nomLeu2.GL397366 3625496 15 + 6458163 GGCTCTCATC---AGCCC i nomLeu2.GL397366 I 2357 C 0 s rheMac3.chr12 94021542 15 + 106825570 GGCTCTCATC---AGCCC i rheMac3.chr12 I 2013 C 0 s calJac3.chr6 146694849 15 + 158406734 GGCTCCCATT---AGCCC i calJac3.chr6 I 6 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 25431 3150 - 53618 I e equCab2.chr6 17819723 3169 + 84719076 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=715820.000000 s mm10.chr1_GL456221_random 36047 464 + 206961 -CCTT-------------------GTCTCTGCCTC--TGTTTTGCCTGTTATTTCCAGGCTTCTGTTGGTTGCTTTTGTTT--------TATTTGCATCTTTACGCCTTTTTCTTTACCTTTCCACTT------CAGGC--TG---------GTTTTCTAA---------------CTTACAGAATGAGAATGAGCATTCCAGATAAGA-GCAACAGTTGTGCAGA-------------------------GTAAATGTAAG-GCACCCATTCTTCAAAAATGATACTGTCCCCGACTGGCTATAGC--CTCGGCTGTGATCCACTTCCGAATTCTGTGAGATGCCTCT---TGTTCTCAAGACCATGGTGAAATTG-------CTGAAGCCCT-GTGTT----------------GCCTC-GCTGTCAGTGTCACA-CCTTAGCAA-GCAG-----------------------CTCTGCCTGGATTCTCTGCACTTGCCTTTGGTTGGTTGGAGGTGTGTGGGCGGGGTTG---GGGGCGGTCTCTTGCTCTAGCT------ACCTTCAGAAGCTTC---AAAAA-----------CTTTATGAAGCCACACCC---GACTTTTCCTACTCT- s rn5.chr9 92348429 456 + 121549591 -CCTT-------------------ATCTCTGACTC--AGTTTTGCCTGC-ATTTCCAGTCTTCCGTTAGTTGTTTTTGTTTGT----TTTGTTTGCGTCCTCAGTCCTGTTTCTT-ATCTTTTCACG-------CAAGC--TA---------GTTTCTCA------------------CACGGAAGGAGAGTGGC-------GCTAAGT-GCAAAAGGTGTGCAGA-------------------------ATAAATGTAAG-GCACCCCTTCTTTAAAACTG-TATTGTCCC----TGGCTGAAGC--CTTGACTGTGACCCACTTCCAAATTCCACGAGATGCCTCT---GGTTCTCAAGACCACGGTGAAGTTG-------CTGGAGCCCT-GTCTT----------------GCTTC-ACTGTCAAGGTCACA-CCTATGCAAAGCTG-----------------------TCCCGCCCTGATTCTCTGCACTTGCCTTTGGTTGGT-GGAAGTGTGTGGGTGGGGATGAGGGGGGAGGTCTCTCACTCCAGCTTACATTAAAGTCAGAAGCTCG---GAAA-----------------CAAAGCCACGCCTTCTGGCTTTTCCTACTCT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104013 522 - 10418462 -CCTTCCGTCTCCCATTTGCCCCCGTCTCAGACCCATTGTTCTACCTGG-ATTTCT--GCTTTTGCT-----TATTTATTT--------CATTTGAAT-TTTGCTCCAATTTCTTTGTCTTTCAACTTTATATCCATGTAGTT---------GTTTTTGAGAGTTGTTTCAGATCCTTTTCAGAATGAGGGTCAGGTAT---AGTAAAA-AAAACAAATAAACAAACAGAAGAACCCTCCCCACCCCCTGCATAAACAGATGTGTGCCCTGTCTTCCCGCATCTCCTTGTCTTTGAAGGTCTAGATCATCTCAGCTCTGAGCC---TCCA---TCCAGGAGGCTCTCCTCCGCGTTCTGATGAAATGGCTGAAGCTGATGTTCCCAGGCACCCT-G--------------------GCTGCGGTTGTGAAGTGCCCG-TACATACAA-GCAA-CTTAGAATTCCGCTTTG--GC-CTCTGCTCCAATTCTCTGCATCTGCCTTTGGTTGGA-GGAG---------------TG---GGAAGAGTCTTTTCCTACCTCT-GGGTGCTCTCCAGAGAGGCT---GAGAG-----------CTTTCTAATGCCACGAGT--------------CTCT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231089552 523 + 243199373 -CCT--------------------GTCTTTGACCCATTTTTCTGCCTGG-ATTTCTAGTCCTGTGGT-------TATATTTTT----TATATTTGCCC-TTTGCTTCCATTTGTTTATCACTCGACTT------TATGC--TGAtatagtgtgtttttgtaaattgtttcaaatcctttacagaatgagggctgggt-----ataaatg-aaaaaTTGTGTGCAAA------------------------CATAAAtgtaat-acagcta-tcctcctgtatcatattgtccttgaaggtctagataatctcagctccaaaccctttccccatccagtgagaaggctgtcactctcctcaagatttcagtgaaatgg-------ttgaagctca-tttttttcccagtcacccctggctGCTGTTGTAAAGTGCCCA-CATATTTGA-GAAAACTTAGAATTGCACCTCA--TTTCTCTGCCC--AACCTCAGCACTTGCCTTTGGCTGGA-GGAGTTG------------AG---AGAGTTGTCTTTTACCTCTGTC----TGCTTTCATGGAGTGCT---AAGAGCATCTCCCCCACTTTCTAATGCATGCTATTTCAGTTCTCCCTGGCCC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235470915 522 + 247518478 -CCT--------------------GTCTTTGACCCATTTTTCTGCCTGG-ATTTCTAGTCCTGTGGT-------TTTATTTTT----TATATTTGCCC-TTTGCTTCCATTTGTTTATCAC-CGACTT------TATGC--TGAtatagtatgtttttgtaaattgtttcaaatcctttacagaatgagggctgggt-----ataaatg-aaaaaTTGTGTGCAAA------------------------CATAAAtgtaat-acagcta-tcctcctgtatcatattgtccttgaaggtctagataatctcagctccaaaccctttccccatccagtgagaaggctgtcactctcctcaagatttcagtgaaatgg-------ttgaagctta-tttttttcccagtcacccctggctGCTGTTGTAAAGTGCCCA-CATATTTGA-GAAAACTTAGAATTGCACCTCA--TTTCTCTGCCC--AACCTCAGCACTTGCCTTTGGCTGGA-GGAGTTG------------AG---AGAGTTGTCTTTTACCTCTGTC----TGCTTTCATGGAGTGCT---AAGAGCATCTCCCACACTTTATAATGCATGCTATTTCAGTTCTCTCTGGCCC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119422565 523 + 131632457 -CCT--------------------GTCTTTGACCCATTTTTCTGCCTGG-ATTTCTAGTCCTGTGGT-------TTTGTTTTT----TATATTTGCCC-TTTGCTTCCATTTGTTTATCACTCGACTT------TATGC--TGATATAGTGTGTTTTTGTAAATTGTTTCAAATCCTTTACAGAATGAGGGCTGGGT-----ATAAATG-AAAAATTGTGTGCAAA------------------------CATAAAtgtaat-acagcta-tcctcctgtatcatattgtccttgaaggtctagataatctcagctccaaaccctttccccctccagtgagaaggctgtcactctcctcaagatttcagtgaaatgg-------ttgaagctca-tttttttcccagtcacccctggctGCTGTTGTAAAGTGCCCA-CATATTTGA-GAAAACTTAGAATTGCACCTCA--CTTCTCTGCCC--AACCTCAGCACTTGCCTTTGGCTGGA-GGAGTTG------------AG---AGAGTTGTCTTTTACTTCTGTC----TGCTTTCATGGAGTGCT---AAGAGCATCTCCCCCACTTTATAATGCATGCTATTTCAGTTCTCTCTGGCCC- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3625511 500 + 6458163 -CCT--------------------GTCTTTGACCCATTTTTCTGCCTGG-ATTTCTAGTCCTGTGGT-------TTTATTTTT----TATATTTGCCC-TTTACTTCCATTTGTTTATCACTTGACTT------TATGC--TGATATAGTGTGTTTTTGTAAATTGTTTCAAATCCTTTACAGAAT---------------------------AATTGTGTGCAAA------------------------CATAAAtgtaat-acagcta-tcctcctgtatcatattgtccttgaaggtctagataatctcagctccaaaccctttccccatccaatgagaaggatgtcactctcctcaagatttcaatgaaATGG-------TTGAAGCTCATTTTTTTTCCCAATCACCCC-GGCTGCTGTTGTAAAGTGCCCA-CATATTTGA-GAAAACTTAGAATTGCATCTCA--CTTATCTGCCC--AACCTCAGCACTTGCCTTTGGTTGGA-GGAGTTG------------AG---AGAGTTGGA--GGAGTTGAGAG----AGCTTTCGTGGAGCGCT---AAGAGCATCTCCCCCACTTTATAATGCATGCTATTTCAGTTCTCTCTGGCCC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94021557 510 + 106825570 -CCT--------------------GTCTTTGACCCATTTTTCTGCCTGG-ATTCCTAGTCCTGTGGT-------TTTATTTTT----TATATTTGCCC-TTTGCTTCCA----TTTATCACTGGACTT------TATGC--TAAtatagtgtgtttttgtaaattgtttcaaatcctttacagaatgagggctgggt-----ataaatg-aaaaaTTGTGTGTAAA------------------------CATAAAtgtaat-acagcta-tcctcctgtatcatattgtccttgaaggtctagataatctcagctccaaaccatttccccatccaatgagaaagctgtcactttcctcaagatttcagtgagatgc-------ttgaagctca-gttttctcccagtcacccctggctGCAGTTGTGAAGTGCCCACCGTATTTGA-GAAAACTTAGAAATGCACCTCA--CTTTTCTGCCC--AACCTCTGCACTTGCATTTGGTT----GGAGTTG------------AG---ATAGTTGTCTTTTACTTCTGTC----TGCTTTCATGGAGT----------GCATCTCCCCTACTTTATAATGCATGGTATTTCAGTTCTCTCTGGCGC- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146694864 505 + 158406734 -TCT--------------------GTCTTTGACCCGTTGTTCTGCCTGG-ATTTCAAGTCCTGAGGT-------TTTATTTAT----TATATTTGTTC-TTTGCTCCCATTTGTTTATCATTTGACTT------TATGC--TGATACAGTGTGTTTTTGTAAATTATTTAAAATCCTTTACAGAATGAG-----------------------AAATTGTGTACAAA------------------------CATAAATGTCAT-ACAGCTA-TCCTCCAGTATCATATtgtcattgaaggtctagataatctcagctct-aatcctctccctgtccaatgagaaggctgtcactttcctcaagatttcagtgaaatac-------tggaagctcattttttttccccattacccctggctGCAGTTGTAAAGTGCCCA-TGTATTTGA-GAAAACTTAGAATTGCACTTCT--CT----TGCCC--AACCTCAGCACTTGCCTTTGGCTGGA-GGAGTTG------------AG---AGAGCTGTCTCTTACCTCTGTC----TGCTTTCAAGGAGTGCTTGAAAGGACATCTCCCTCACTTTATAATGCAAGGTATTTCAGTTCTCTCTAGGGC- i calJac3.chr6 C 0 C 0 s equCab2.chr6 17822892 527 + 84719076 CTTT--------------------GTCTTTGACCCATTGTCCTGCCTGG-ATTTCCAGCCctctggt-------tttgcttatttcatttatttgtac-attactcccatttctttatgtttcacctt------tgtgc--tgatgtagtgtgtttctgtaagttgcctcaaatcctttacagaatgagggctgggt-----ataaatgaaaaaaTTATGTGCAAA------------------------CATAAATGTAAT-GCCCTTG-TTAGCCAGCATCACATTGTCCTGTAAGGTCTAGGTCATCTCAGTTTTGGACC-TTTCCCCATCCAA-GAGAAGCCTGTTGCTCTCCTCGAGATTTCAGC-AACTAG-------TTGAAGCTCA--TTTTTCCCCAATCACTCCTGGTTGCATTTGTAAAGTGCCCA-CATATTCAA-GAAAGCTTGGAATTGCACATCAGGCTTCTCTGACC--AAACCTGGCACTTTCCTCTGGTTGCA-GGATTTG------------GG---AGAGTTCTCTCTTAAGTCTGGC----TGCTCTCCAGAAATTTG---AAGAACAACTTCTCC-CCTTATAATGCCAAGCATTTCAGCTCTCTCTAGCTCT i equCab2.chr6 I 3169 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 25431 3150 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212383703 5372 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-13883.000000 s mm10.chr1_GL456221_random 36511 6 + 206961 ----GCTGCT s rn5.chr9 92348885 6 + 121549591 ----GCTGTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104535 4 - 10418462 ----AC--CT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231090075 6 + 243199373 ----CATGTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471437 6 + 247518478 ----CATGTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423088 6 + 131632457 ----CATGTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626011 6 + 6458163 ----CATGTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022067 6 + 106825570 ----CATGTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146695369 6 + 158406734 ----CATCTC i calJac3.chr6 C 0 C 0 s felCat5.chrC1 212389075 6 + 221441202 GAAGAG---- i felCat5.chrC1 I 5372 I 60 s equCab2.chr6 17823419 3 + 84719076 ---GCG---- i equCab2.chr6 C 0 I 3 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 25431 3150 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=120616.000000 s mm10.chr1_GL456221_random 36517 55 + 206961 CAATTATCAGATCCCAGCTTCTCTGGTTCTGACTTACTAGGGTGCCAGGACAGTT s rn5.chr9 92348891 55 + 121549591 CAAATATCAGATGCCACCTCCTCTGGTTCTGACTCAAGGGGCTGCCGGGACAGCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104539 55 - 10418462 CCAATAACTAAGTCTGACTCCTCCAGTCCAGGCTGGCCAAGGTGACTGGCCAGGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231090081 54 + 243199373 CAAACA-CTGGGCCTAAGCCATCCAGCCCAGGCTCACTAAGGTGCATGGCCAGCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471443 54 + 247518478 CAAACA-CTGGGCCTAAGCCATCCAGCCCAGGCTCACTAAGGTGCATGGCCAGCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423094 54 + 131632457 CGAACA-CTGGGCCTAAGCCATCCAGCCCAGGCTCACTAAGGTGCATGGCCAGCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626017 54 + 6458163 CAAACA-CTGGGCCTAACCCATCCAGCCCAGGCTCACTAAGGTGCATGGCCAGCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022073 54 + 106825570 CAATCA-CTGGGCCTAACCCATCCAGCCCAGGCTCACTAAGGTGCATGGCCAGCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146695375 54 + 158406734 CAAACA-CTGGGCCTAACTCATCCAGCCCAGGCTCACCAAGGTGTATGGCTAGCC i calJac3.chr6 C 0 C 0 s equCab2.chr6 17823425 53 + 84719076 -GAACA-CTGGGCCTAACTCGTTTAGTCCGGGCTCACTGCTGTGTCCAGCCAGCC i equCab2.chr6 I 3 I 1 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 25431 3150 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389081 60 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-1239.000000 s mm10.chr1_GL456221_random 36572 1 + 206961 A s rn5.chr9 92348946 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104594 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231090135 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471497 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423148 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626071 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022127 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146695429 1 + 158406734 C i calJac3.chr6 C 0 C 0 s turTru2.JH490333 28581 1 - 53618 A i turTru2.JH490333 I 3150 I 405 s felCat5.chrC1 212389141 1 + 221441202 A i felCat5.chrC1 I 60 I 333 s equCab2.chr6 17823479 1 + 84719076 A i equCab2.chr6 I 1 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e papHam1.scaffold15394 26259 17356 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=260651.000000 s mm10.chr1_GL456221_random 36573 161 + 206961 CAA-GTCTGA---GAGACTGCAGACAATCTAACTCTTCCTGGTCTTTC--CAGGCACCGCCCC---CGCTTAGGGTTAAGGGACCACTTCCTT--CCTATCCTAACCA-GCC--AGCTGGCCTTA-GACAGCTCTGAGC--CCT--TCGCTGAAACAGACCCTTCCACCTTCTTTCCTTA s rn5.chr9 92348947 155 + 121549591 CAG-GCCAGA---GAGACTGCGGACGACCTA-CTCTTCCTCATCCTTC--CAGGCACCACCCA----GCAAAGGGCAAAGG----AGTTCCTT--CCTTTACTAACCA-GCC--AGCTGGCCTCA-GACAGCTAGGAGC--TCT--TAGCTGAAACAAACCCTCCCACCTTCTTTCCTTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104595 161 - 10418462 CAG-GCCTGA---GAGA------ACATTCT--CAAGGCTTCACTTTCC--CAGCCACCGTGGCAAGCGGAAGGGGCAAACATGGCATTTGCTTCCCCCATGTGAACCATGCC--ACCTCATCTCAGGACAACAGTGGTC--CCTGGTAGTTG-AATGGACTTTCCCACCCTGTCTTTCAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231090136 168 + 243199373 TGGAGCCTGACTGAAGATTTGAAATGTCTGGTCTTCACTTGTCCTTCT--CAGCCACCTCAGCAAGGGGTGGGGACAAATACAGAGTTTACTT--CC--TCCTCATGATGCC--ACCTTACCTCAAAACAACTTTGATCTGCTT--GAGTTG-AAT-GACTTTTCCACCCTCTTTCCTTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471498 168 + 247518478 TGGAGCCTGACTGAAGATTTGAAATGTCTGGTCTTCACTTGTCCTTCT--CAGCCACCTCAGCAAGGGGTGGGGACAAATACAGAGTTTACTT--CC--TCCTCATGATGCC--ACCTTACCTCAAAACAACTTTGATCTGCTT--GAGTTG-AAT-GACTTTTCCACCCTCTTTCCTTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423149 168 + 131632457 TGGAGCCTGACTGAAGATTTTAAATGTCTGGTCTTCACTTGTCCTTCT--CAGCCACCTCAGCAAGGGGTAGGGACAAATACAGAGTTTACTT--CC--TCCTCATGATGCC--ACCTTACCTCAAAACAACTTTGATCTGCTT--GAGTTG-AAT-GACTTTTCCACCCTCTTTCCTTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626072 168 + 6458163 TGGAGCCTGACTGAAGATTTGAAATGTCTGGTCTTCACTTATCCTTCT--CAGCCACCTCAGCAAGGGATAGGGACAAATACAGAGTTTACTT--CC--TCCTCATGATGCC--ACCTTACCTCAAAACAACTTTGATCTGCTT--GAGTTG-AAT-GACTTTTCCACCCTCTTTCCTTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022128 168 + 106825570 TGGAGCCTGACTGAAGATTTCAAATGCCTGGTCTTCACTTGTCCTTCT--CAGCCACCTCAGCAAGGGGTAGGGACAAATATGGAGTTTACTT--CC--TCCTCATGAAGGC--ATCTTACCTCAAAACAACTTCGACTTGCTT--GAGTTG-AAT-GACTTTACAACCCTCTTTCCTTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146695430 168 + 158406734 TGGAGCCTGACTGAAGATTTGAAACACCTGGTCTTCACTTGTCCTTCT--CAGCCACTTCAGCAAGGGGTAGGGACAAACGTGGAGTTTGCTC--CC--TCCTCATGATGCC--ATCTTACCTCAAAACAACTTTGATCTGCTT--AAGTGG-AAC-GACTTTTTCACCCTCTTTCCTTG i calJac3.chr6 C 0 C 0 s equCab2.chr6 17823480 159 + 84719076 TGG-GCCTGAGAGAAGATCTGAAATGTCTGGCTTTCTCTTTACTTTCTCACAACCACCCCAC------------AGCAATATAA---TTCCTT--CCCATATAAACTACCTCAAACCCTACCTCAAAACAGCTGTGATCTGTCT--GAGTTA-AAGGGACTTTTCTGCCCTCCCTCCTTT i equCab2.chr6 C 0 C 0 e taeGut1.chr26_random 1241389 167 + 1627540 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28582 405 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389142 333 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=135663.000000 s mm10.chr1_GL456221_random 36734 98 + 206961 GAAGGCAGCAGGAGTCC--CAGGTTTCTGGGGAC---TTGGGCTGTCTTTGCTCCTCCCCTCTGGG------------GCAGAGACTGG-------GGGTGGAGGGCAGTGCTTTAGTGCAG s rn5.chr9 92349102 95 + 121549591 GAGGGCAGCAGGGGTCC--CAGGTTTCTGGGGAC---TTGGGCTGTCTTTGCTCCTCCCCTGTGGG------------GCAGAGCCTAG----------TGGGGGCCAGTGCGTTAGTACAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104756 65 - 10418462 GAA--------------------CTCCTGGG------TTGGCCCGT------TCCTCCTCTCCAGG------------GCACAGGCTAG------------AGTATTGGTGC-TTGGTGCAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231090304 115 + 243199373 GCAGG-AACAAGTGACC--CTGTCTTCCGTGGCCTCGTGGGGCTGGCTCTGCTCCTCCTCCCTTGACTGAGAGACGTCATGGAGATTGG----GTGGAGGGAGGACTGTAGAGTTGGTGCAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471666 115 + 247518478 GCAGG-AACAAGTGACC--CTGTCTTCCGTGGCCTCGTGGGGCTGGCTCTGCTCCTCCTCCCTTGACTGAGAGACGTCATGGAGATTGG----GTGGAGGGAGGACTGTAGAGTTGGTGCAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423317 115 + 131632457 GCAGG-AACAAGTGACC--CTGTCTTCTGTGGCCTCGTGGGGCTGGCTCTGCTCCTCCTCCCTTGACTGAGAGACGTCATGGAGATTGG----GTGGAGGGAGGACTGTAGAGTTGGTGCAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626240 115 + 6458163 GCAGG-AACAAGTGACC--CTGTCTTCCGTGGCCTCGTGGGGCTGGCTCTGCTCCTCCTCCCTTGACTGAGAGACGTCATGGAGATTGG----GTGGAGGGAGGACTGTAGAGTTGGTGCAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022296 115 + 106825570 GCAGG-AAAAAGTGACC--CCGTCTTCTGTGGCCTCGTGGGGCTGGCTTTGCTCCTCCTCCCTTGACTGAGGGACGTCATGGAGATTGG----GTGGAGGGAGGACTGTAGAGTTGGTGCAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146695598 113 + 158406734 GCAGG-AACAAACGACC--CCATCTTCCTTGGCCTCGTGGGGCTGGCTCCGCTCCTCCTCCCTTGACTGCAAGACCTAAGGGTGATTGG----GTGGAGAGAGGACTGTAGAACTG--GCAG i calJac3.chr6 C 0 C 0 s equCab2.chr6 17823639 117 + 84719076 ACATG-AACAAGCAGCCCGCTCTCTTCTGTGGATGCCTGGGACTGGCCCTGCTCCTCCTCCTCGGGGCTGAGACAGCCTCAGAGATTGG----GCAGAAGGAAGGCCAGCCTCCTGGTGCAG i equCab2.chr6 C 0 C 0 s taeGut1.chr26_random 1241556 99 + 1627540 GAAGGCAGCAGGACCCG--GAGGTGCCAAGGGAG---AGGGACTG----------TCCCGCAGTGACGCGGGG-----CCAGGGCTCAGAGCCGCTGTGAGGGCACTGCTGTGCCACGG--- i taeGut1.chr26_random I 167 N 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28582 405 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389142 333 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=102093.000000 s mm10.chr1_GL456221_random 36832 51 + 206961 TGTTGTCA--TA--GTTAAGCAATTTCACTTTCCTTTTTCTCCTCTTTGGAGGCC s rn5.chr9 92349197 51 + 121549591 TGATGTCA--TA--GTTGAACAATTTCACTTTCCTTTTTCTCCTCTTTGGAGGGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104821 53 - 10418462 CCACTCCA--CACCGTTGGGCAATTTCACTTTTCTCTTCCCCTTTTGACGCAAAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231090419 51 + 243199373 CCACGTCAGCTA--GTTAGGCAATTTCACTTTTCTTTTCCTCTTTGACTGAG--C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471781 51 + 247518478 CCACGTCAGCTA--GTTAGGCAATTTCACTTTTCTTTTCCTCTTTGACTGAG--C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423432 51 + 131632457 CCACGTCAGCTA--GTTAGGCAATTTCACTTTTCTTTTCCTCTTTGACTGAG--C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626355 51 + 6458163 CCACGTCAGCTG--GTTAGGCAATTTCACTTTTCTTTTCCTCTTCGACTGAG--C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022411 51 + 106825570 CTACGTCAGCTG--GTTAGGCAATTTCACTTTTCTTTTCCTCTTTGGCTGAG--C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146695711 51 + 158406734 CCAGGTCAGGTG--GTTAGTTGGTTTCACTTTTCTTCTCTTCTTTGGCCCAG--C i calJac3.chr6 C 0 C 0 s equCab2.chr6 17823756 50 + 84719076 CTACGTCACGCT--GTTCGGCAACTTCATTTTTCTTTTACCCTTTGGGTGCC--- i equCab2.chr6 C 0 I 2 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28582 405 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389142 333 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=4297.000000 s mm10.chr1_GL456221_random 36883 6 + 206961 -CCTGAA s rn5.chr9 92349248 6 + 121549591 -TCCGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104874 6 - 10418462 -CCCAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231090470 6 + 243199373 -ACCGAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471832 6 + 247518478 -ACCGAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423483 6 + 131632457 -ACCGAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626406 6 + 6458163 -ACCGAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022462 6 + 106825570 -CCCGAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146695762 6 + 158406734 -CACAAG i calJac3.chr6 C 0 C 0 s felCat5.chrC1 212389475 6 + 221441202 ACACGA- i felCat5.chrC1 I 333 I 51 s equCab2.chr6 17823808 6 + 84719076 ACTCAA- i equCab2.chr6 I 2 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28582 405 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=31580.000000 s mm10.chr1_GL456221_random 36889 29 + 206961 GGA-------------------------GTTCTCTCTGGGCTTCCCAGA-GACTC s rn5.chr9 92349254 29 + 121549591 GGA-------------------------GTTCTCTCTGGGCTTCCCAGA-GTCTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104880 54 - 10418462 GGATGGAGGGGTTGACCAATTGGTAG-GGTTCTCCTTTGATCTCTGGGATGGCAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231090476 40 + 243199373 GGG-------------CAGTTGGCAG-CTTCACCTCAGAGCTGCAGGAA-GGAAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471838 40 + 247518478 GGG-------------CAGTTGGCAG-CTTCACCTCAGAGCTGCAGGAA-GGAAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423489 40 + 131632457 GGG-------------CAGTTGGCAG-CTTCACCTCAGAGCTGCAGGAA-GGAAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626412 40 + 6458163 GGG-------------CAGTTGGCTG-CTTCACCTCAGAGCTGCAGGAA-GGGAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022468 40 + 106825570 GGG-------------CAGTTGGCAG-CTTTACCTCAGAGCTGCAGGAA-GGGAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146695768 40 + 158406734 GGG-------------CAGCTGGCAG-TTTCACCTCAGAGCTGCAGGAA-GGGAC i calJac3.chr6 C 0 C 0 s equCab2.chr6 17823814 47 + 84719076 -------GGAATTGATCCATAGGCAGACGCTCTCGTCAGATTCTAAGAA-GGCAC i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28582 405 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389481 51 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=1230.000000 s mm10.chr1_GL456221_random 36918 7 + 206961 AGAG--GGG s rn5.chr9 92349283 9 + 121549591 AGAGCGGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104934 7 - 10418462 AGAG--GTA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231090516 6 + 243199373 GG-G--GCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471878 6 + 247518478 GG-G--GCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423529 6 + 131632457 GG-G--GCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626452 6 + 6458163 GG-G--GCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022508 6 + 106825570 GG-G--GCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146695808 7 + 158406734 AGCG--GCA i calJac3.chr6 C 0 C 0 s turTru2.JH490333 28987 7 - 53618 AGTG--AAA i turTru2.JH490333 I 405 I 13603 s felCat5.chrC1 212389532 7 + 221441202 AAAG--GCA i felCat5.chrC1 I 51 C 0 s equCab2.chr6 17823861 7 + 84719076 AGAG--GCA i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e papHam1.scaffold15394 26259 17356 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=10178.000000 s mm10.chr1_GL456221_random 36925 5 + 206961 GT----------TCG s rn5.chr9 92349292 5 + 121549591 GT----------TCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104941 15 - 10418462 GTGGAAACCTAACCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231090522 15 + 243199373 GTGAAAATCGAATCG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235471884 15 + 247518478 GTGAAAATCGAGTCG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119423535 15 + 131632457 GTGAAAATCGAATCG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3626458 15 + 6458163 GTGAAAATCGAATCG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94022514 15 + 106825570 GTGAAAATCTAATCG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146695815 15 + 158406734 GTGAAAAGCGAATCG i calJac3.chr6 C 0 C 0 s felCat5.chrC1 212389539 5 + 221441202 GTCAA---------- i felCat5.chrC1 C 0 I 18604 s equCab2.chr6 17823868 5 + 84719076 GTGAA---------- i equCab2.chr6 C 0 I 6 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=302584.000000 s mm10.chr1_GL456221_random 36930 138 + 206961 ----GTC-TAC-CCTGAACCCAGTTCAGGGTCCCTTGCAGTCTGTGTAGG-GGATGGCAGGAG-GCAACAATGAACTCAGCAGCAGGTAAGTCCCAT---TCTCTC----TTGTCCCTTGTCTCTGCTAAGATCTGCCTTTAAATGTGTTACT s rn5.chr9 92349297 140 + 121549591 ----GTC-TGC-CCTGAGCCAAGTTCAGGGTCCCTTGGGGTCTGCGTAGG-GGATGGCAGGAG-GAGACAATGGACTCAGCAGCAGGTAAGTCCCATCC-TTTCTC----TTGTCTCTTGTCTCTGCTAAGATCTGTGTTGAAATGTGTTACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4104956 140 - 10418462 ----GGC-TGCGGCTAAGCCAAGCGCACGGCCCA--GGGGCCAGCAGTAG-GGACGGCAGACGTGGACCCAGAGTCTCAGTTTCAGGTAAGTCCCAGCCTCCTCTC----CTTGCCCTGGTATGTGATAAGGTC-ACCTCTGCATTTGTTACG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231090537 148 + 243199373 ----GGTGTGATCCTAGGCCAAGCTCATGGCCCAGCAGGGCCAGCAGGGGCAGATGGCAAGTG-GAGACAGCAATCTCAACTTCAGGTGGGTCATCGTCTCCTTTCCCGTCTGTCCTTCATCTCTGGTAGGGTTCCCTTTCATACTTGTTATT i hg19.chr2 C 0 I 82 s panTro4.chr2B 235471899 148 + 247518478 ----GGTGTGATCCTAGGCCAAGCTCATGGCCCAGCAGGGCCAGCAGGGGCAGATGGCAAGTG-GAGACAGCAATCTCAACTTCAGGTGGGTCATCGTCTCCTTTCCCGTCTGTCCTTCATCTCTGGTAGGGTTCCCATTCATACTTGTTATT i panTro4.chr2B C 0 I 82 s gorGor3.chr2B 119423550 148 + 131632457 ----GGTGTGATCCTAGGCCAAGCTCATGGCCCAGCAGGGCCAGCAGGGGCAGATGGCAAGTG-GAGACAGCAATCTCAACTTCAGGTGGGTCATCGTCTCCTTTCCCGTCTGTCCTTCATCTCTGGTAGGGTTCCCATTCATACTTGTTATT i gorGor3.chr2B C 0 I 82 s nomLeu2.GL397366 3626473 148 + 6458163 ----GGTGTGATCCTAGGCCAAGCTCATGGCCCAGCAGGGCCAGCAGGGGCAGATGGCAAGTG-GAGACAGCAATCTCAACTTCAGGTGGGTCATCGTCTCCTTTCCCGTCTGTCCTTCATCTCTGGTAGGGTTCCCATTCATACTTGTTATT i nomLeu2.GL397366 C 0 I 82 s rheMac3.chr12 94022529 148 + 106825570 ----GGTGTGATCCTAGGCCAAGCTCATGGCCCAGCGGGGCCAGCAGGGGCAGATGGCAAGTG-GAGACAGCAATCTCAACTCCAGGTGGGTCATCGTCTCCTTTCCCGTCTGTCCTTCATTTCTGGTAGGGTTCCCATTCATACTTGTTATT i rheMac3.chr12 C 0 I 82 s calJac3.chr6 146695830 148 + 158406734 ----GGTGTGATCCTTGGCTGAGCTCATGGCCCAGCAGGGCCAGCAAGGGCAGATGGCAAGTG-GAGGCAGCGATCTCAACTTCAGGTGGGTCATCATCTCCTTTCCTGTCTGTCCTTCAGCTCTGCTAGGGTTCCCATTCACACTTGTTACT i calJac3.chr6 C 0 I 85 s equCab2.chr6 17823879 149 + 84719076 ACCAAGTGTGATCCTAGGCCAGCTCCGTGGCCCAGCGGGGCCAGGAATAGAAGATGGCAAGTG-GAGGCAGCGACTTCAACTGCAGGTTAGTCCTGGCCTCCTCTTC---ATGTCTTTCGTTTTTCGTAAGGTCGGTGTGTACATTTGTTATT i equCab2.chr6 I 6 I 91 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=2519.000000 s mm10.chr1_GL456221_random 37068 31 + 206961 AGGGCCGCCCGGGCTGGGTCCA-AGGCCCACA s rn5.chr9 92349437 31 + 121549591 AGGGCCACCCAGGCTGGGACCA-AGGCCCACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4105096 32 - 10418462 TATGTCTCCCCAGCCCATTCCACAGGTCGACA i speTri2.JH393335 C 0 I 8679 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94022677 82 + 106825570 I e equCab2.chr6 17824028 91 + 84719076 I e nomLeu2.GL397366 3626621 82 + 6458163 I e gorGor3.chr2B 119423698 82 + 131632457 I e panTro4.chr2B 235472047 82 + 247518478 I e hg19.chr2 231090685 82 + 243199373 I e calJac3.chr6 146695978 85 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=2209.000000 s mm10.chr1_GL456221_random 37099 37 + 206961 GATATTTGAGACAGTGATCTCATAAGGAAAAGAAGAa s rn5.chr9 92349468 35 + 121549591 GATATTTGAGAC--TGAGCTCATAAGGACACGAAGAA i rn5.chr9 C 0 I 9 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4105128 8679 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94022677 82 + 106825570 I e equCab2.chr6 17824028 91 + 84719076 I e nomLeu2.GL397366 3626621 82 + 6458163 I e gorGor3.chr2B 119423698 82 + 131632457 I e panTro4.chr2B 235472047 82 + 247518478 I e hg19.chr2 231090685 82 + 243199373 I e calJac3.chr6 146695978 85 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 37136 3507 + 206961 ctgggtttagttggattccgaggtaacaagggccaggtggcagctttgaatcgccggagacaaggtgattctagttattataatggacagcggagacaaaagaatgtttataataacatacccagtaatggtcagcacaggagaggtgaaatttataatggcatgactcggttggacattttctttggcagaggcaactctaaagtcttccatttggcctttccaaccatcatagccctcactctacagttcagggaaccaatatgagaattctgccaatttctgagtatatctatcccaattatacattctggaactggggaaatcaccacaggatgtgtccggggacttactggacctactgtgagtcggacatcagtcaaaactccattaatcacctgccctccataagcccctactttaactggagggccacaatgtttcttgggatcacctgggatcagtgtcaactcagaaccagtatccagcagaccccgaaaagtctgattatttccttttccccagtgtacagctacccttgtaaaaggccgtaggtccctctggggaagaactggagaaagggtaacaacaaaacctttgagtgtcttatcaaggtccttcctcagcggaacctggccaccccttcattcaaggggttctggatctgcaaactgtctcatctggaaattgattcactggccgagattgctgtttaccacgatctaatgtagcctttctttcatttggctgtttaccacgatctaatgtagcctttatttcatttgtttgagaatttttctgcttatacagatcaaacaaatatgcagtaagcttcctatgtatttcattcctggaaacaccatgattggttagccagtaccaaaggtccaaccgagtcatgccattataaatttcacctctcctgtgctgaccattactgggtatgttattataaacattcttttgtctacgctgtccattataataactagaatcaccttgtctccggcgattcaatgctgccacctggcccttgttacctcgaatccaactaaacccagtgaatttaattcatctaattgagcagaagcatctccaatgctaagatctggcacaaggaaaagggaaagaacaaaacccttcaaatgtgctggtgcccctctcaccaatttgcgtcttatagacctggtgaaaggcatatcttctggaccttcccattgtagacaattatgctttacacaatatatccactctagcattgcaatttccctaagtcttaaaatcccttcatcaacactaagccacggaatatcaggcatctctaagtcatttccagtaggccatcttttgataaacacctcagccaaccattcaaacaaacttttgacaccttttttaactatgcgagcttccatattaaacctagaatctttattcagaggacccatgtcaataaactcagcctgctctagttttatgttccttccacccttatcccacacccttaaaatccattcccacacatattcaccaggtttctgcttgaatgaattagcaaactcattaagctccttagtagtgtagcgaatttcctcatggactacactttctacctcccctctaggagcctgttttgctttgagtctggttacaggtctagaagaaactattattgggccttgagaaacatcagtagtgaaagtcattgctggtttatcagactctacaaaattaatttccttatgtggggaaggcattatttcaaggggtggggctgtgagggtactacttcctcaggtggggaaaacccttgagattctgaagattcaaaattctcagcttcaatatggtcttcccacacatccgcgtcccatgttgtaggatcccattctttgccaattagagcccctactttaactgtcaacacactctgaggctgagacttgaattttcgctgtagttcagccaatcttataatgagagtttccgtttgattttctgcaacttgagctctattgctacaagagagaagattctcctcaaggacacactttgcaacttttagatcgtttacttgtgtctggagccttttgattttatcacacaactccttcctttcattcatcattttttccacagatactaagagcagccagccagtaaaatcattttccgatttttccccatcttgtagaaagctttgtgcactgaatcacctaattcattaagaaaatcaagggcattagcttctttaagttcggaatatagtttcaaccatgggtcttcaaaattctctgagctcccaggagggagagaatctggggacactatgcccctccttagaagtgggaacaaaacacccttggaaggagttacacagacaaagtttggagcagagatgaaaggatggaccatgtagagactgccttatccagggatccaccccataatcagcatccaaacgctgacaccattgcatacactagcaagattttatcgaaaggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaacacagaagtggatgcccacagtcagctaatggatggatcacagggcacccaatggaggagctagagaaagtacccaaggagctaaagggatctgcaaccctataggtggatcaacattatgaactaaccagtaccccggagctcttgactctagctgcatatgtatcaaaagatggcctagtcggccatcactggaaagagaggcccattggacacacaaactttatatgccctagaacaggggaacgccagggccaaaaagggggagtgggcgggtaggggaatgggggtgggtgggtatgggggacttttggtatagcattggaaatgtaaatgagctaaatacctaataaaaaatggaaagaaaaaaaaaagtgctggtggatcaacaagccaattccagtattttaaaagattcatccttgtacttctgttactctagaaccacttctggtaccaacttctgtattagtcagggttctctagagtcacagaactatggatagtctctagatagtaaaggaatttattgatgacttacagtcagcagcccaattcccaacaatggttcagtcacagttgtgaatggaagtccaaggatctagcagttactcagtctcatgcagcaagcaggcgaagaagcaagagcaagagctagactcccttcttccagtgtccttatattgtctgcagcagaaggtgtagcccagattaaaggtgtgttccaccacacctttaatcccagatgaaaggaatagcccagattaaaggtgtgttccttaaacttggacattcaatcttctggaatccatagccactatggctcaagatcttcaaaccaagatccagataaggatctccaagcctccagataagggtcactggtgagccttccaattacggattgtagttcattccaaatattgtcaagttgacaaccaggagtagccactaca e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4105128 8679 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94022677 82 + 106825570 I e equCab2.chr6 17824028 91 + 84719076 I e nomLeu2.GL397366 3626621 82 + 6458163 I e gorGor3.chr2B 119423698 82 + 131632457 I e panTro4.chr2B 235472047 82 + 247518478 I e hg19.chr2 231090685 82 + 243199373 I e calJac3.chr6 146695978 85 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92349503 9 + 121549591 I a score=494.000000 s mm10.chr1_GL456221_random 40643 11 + 206961 GCAGCCTTCTC s rn5.chr9 92349512 11 + 121549591 GCAGGCTTCAT i rn5.chr9 I 9 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4105128 8679 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94022677 82 + 106825570 I e equCab2.chr6 17824028 91 + 84719076 I e nomLeu2.GL397366 3626621 82 + 6458163 I e gorGor3.chr2B 119423698 82 + 131632457 I e panTro4.chr2B 235472047 82 + 247518478 I e hg19.chr2 231090685 82 + 243199373 I e calJac3.chr6 146695978 85 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=46046.000000 s mm10.chr1_GL456221_random 40654 30 + 206961 TGCAG-TAGGCTAGCTGTCAGAGAGTTCTAT s rn5.chr9 92349523 31 + 121549591 CGCGGGTAGGCTAGCTGTCAGAGAGTCCTAT i rn5.chr9 C 0 C 0 s hg19.chr2 231090767 29 + 243199373 TGCAG--GGATTGGCTGTTGGAGAAACTCAA i hg19.chr2 I 82 C 0 s panTro4.chr2B 235472129 29 + 247518478 TGCAG--GGATTGGCTGTTGGAGAAACTCAA i panTro4.chr2B I 82 C 0 s gorGor3.chr2B 119423780 29 + 131632457 TGCAG--GGATTGGCTGTTGGAGAAACTCAA i gorGor3.chr2B I 82 C 0 s nomLeu2.GL397366 3626703 29 + 6458163 TGCAG--GGATTGGTTGTTGGAGAAACTCAA i nomLeu2.GL397366 I 82 C 0 s rheMac3.chr12 94022759 29 + 106825570 TGCAG--GGATTGGCTGTTGGATAAACTCAG i rheMac3.chr12 I 82 C 0 s calJac3.chr6 146696063 29 + 158406734 TGCAG--GGATTGGCTATTGGAGAAACTTAA i calJac3.chr6 I 85 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4105128 8679 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e equCab2.chr6 17824028 91 + 84719076 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=261455.000000 s mm10.chr1_GL456221_random 40684 142 + 206961 GGT--CGCCCTAACTCCATACTCCGCTT---CATTTCGTTGCTTCTGTCCCAGAGCTTGTCTGGTGCT-------------GTGTGGACTTCCTGTGAGCTCC----------TGTAGGAGTGGCTGGTTCATTGTGACTTCTGA--CCTCTCTTCT---------CTTTCTAACGCTCAC s rn5.chr9 92349554 154 + 121549591 GGTTACCCCCCAACTC---ACCCCACTT---CATTTCCTTGCTCCTGTCCCAGAGCTTGTCTGGCGCGCTGTGGCCTTCCGGTGTGGACTTCCTGGGAGCTCT----------TGTAGGAGTGGCTGGTTCACTGTGACTTCTGG--CCTCTCATCT---------CTTTCTAACCCTCAC i rn5.chr9 C 0 C 0 s hg19.chr2 231090796 161 + 243199373 GGA--TGCCGTGACTC---ACATCATCTTCCTATTCTCTTACATCTG-CAAATGGCTGGACTGGAGCT-------------GTTTGAACATCATGCCTGTTCTGAGGCTTTG-TGTAGGATTGGATGATTCCCCGTGACCTCTGAACCCTCTCTTCTCCCCCAGGCCTCCTTTATCCCCAC i hg19.chr2 C 0 I 1 s panTro4.chr2B 235472158 161 + 247518478 GGA--TGCCGTGACTC---ACATCATCTTCCTATTCTCTTACATCTG-CAAATGGCTGGACTGGAGCT-------------GTTTGAACATCATGCCCCTTCTGAGGCTTTG-TGTTGGATTGGATGATTCCCCGTGACCTCTGAACCCTCTCTTCTCCCCCAGGCCTCCTTTATCCCCAC i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119423809 161 + 131632457 GGA--TGCCGTGACTC---ACATCATCTTCCTATTCTCTTACATCTG-CAAATGGCTGGACTGGAGCT-------------GTTTGAACATCATGCCCCTTCTGAGGCTTTG-TGTAGGATTGGATGATTCCCCGTGACCTCTGAACCCTCTCTTCTCCCCCAGGCCTCCTTTATCCCCAC i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3626732 162 + 6458163 GGA--TGCCGTGACTC---ACATCATCTTCCTATTCTCTTACATCTG-CAAATGGCGGGACTGGAGCT-------------GTTTGAACATCATGCCCCTTCTGAGGCTTTGCTGTAGGATTGGATGATTCCCCGTGACCTCTGAACCCTCTCTTCTCCCCCAGGCCTCCTTTATCCCCAC i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94022788 162 + 106825570 GGA--TGCCGTGACTC---ACATCATCTTCCTATTCTCTTACATCTG-CAAATGGCTGGACTGGAGCC-------------ATTTGAACATCATGCCCCTTCTGAGGCTTTGCTGTAGGATTGGATAATTCCCCGTGACCTCTGAACCCTCTCATCTTCCCCAGGCCTCCTTTATCCCCAC i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146696092 162 + 158406734 GGG--CGCTCTGACTC---ACATGGTCTTCCTATTTCCTTACATCTG-TGAATGGCTGGACTGGAGCT-------------GTTTGAACATCATGCGCCTTCTGAGGCTTTGCTGAAGGATAGGATGATTACCCATGATCTCTGAACCCTTTCCTCTCCCCCAGGCCTCCTTCATCCCTAC i calJac3.chr6 C 0 I 1 s equCab2.chr6 17824119 158 + 84719076 GGT--CACCCTGACTC---GCTTCGCCT---CCTTTTTGTGTAAATGCTATGCAGCTGAGC-GGCACT-------------GTTGGCACTTCCTGGTCCATGTGAGGCTGTGCTGCAAGGTTGGATGATTCCTCACACCCTCTGAAACCTCTCA-CTTCCCCAAGCCTCCTCTATCCCCAC i equCab2.chr6 I 91 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4105128 8679 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=-1034.000000 s mm10.chr1_GL456221_random 40826 1 + 206961 -G s rn5.chr9 92349708 1 + 121549591 -T i rn5.chr9 C 0 C 0 s equCab2.chr6 17824277 1 + 84719076 C- i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4105128 8679 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94022950 1 + 106825570 I e nomLeu2.GL397366 3626894 1 + 6458163 I e gorGor3.chr2B 119423970 1 + 131632457 I e panTro4.chr2B 235472319 1 + 247518478 I e hg19.chr2 231090957 1 + 243199373 I e calJac3.chr6 146696254 1 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=500870.000000 s mm10.chr1_GL456221_random 40827 250 + 206961 CTAAAGGACAGCTCTGTCCAAGAAAGATC-ATTAAGAGTAAGTTCAAACCTGA-------TCCTGTCAATTGCTGATCTCCAC----AGTCT-TGTGGTTGAAGA-CAGCTCTGGCCTGAGCCCA--CAAGTCCTACTTAG-------GTCAGGTCCCCATAGTTTCCTAGCTCAGAGGGAGGAAGTGAAAG------------------------GTGAGCAGGTGGGGAGTGGGTGATGCTCTTAACCCTTTCTGTTCC----TGTTGG------TTACTGAGCAGGTTAGAAATGGATGCAAAT s rn5.chr9 92349709 248 + 121549591 CTAAAGGACAGCTCTGTCCAAGGAAGATC-ATTTAGAATAAGTTCAAACCTGA-------TCCTGTCGGTTGCCAGTCTTCCC----AGGTT-AGTGGTTGTGGA-CAGCCCTGGCCTGAGCCCA--CATGTCCTACTTAG-------GTCAGGTCCGGG-AGTTTCATCTCTCAGTTGGAGGAAGTGAGAG------------------------G-GAGGAGGTGGGGAGTGGGTGTTGCTCTTAACCCCTTCTATTCC----TGATGG------TTACATAGCTGGTTAGAAATAGATGCAAAT i rn5.chr9 C 0 C 0 s hg19.chr2 231090958 293 + 243199373 CCAAAAGACAACTCTGTCTAAAAAGGATC-TTTTTAGAAGAATTAAAATCCAA-----ACGCCTGTCTGTTGTCACACTTTCC----AGGCTGTGTAGTTGGGGACCGGTTCTGCTCTGAGCCCATCTATGTGGCTCTTAGCCCTAGAATCACTTCAGGA-TCTCTGAATACTTGGTAGGAGGAAGTGAAAGCAGATGAGACCCAAC--AAAAAAGGCAAGCAGGTAGAGAGTGAGTGCTGCTTCT-GCTTTTTTTATTCTTCTGTTCTGGTATTTTTTACATATCTGGTCAGAGAAGCCTGGAAAT i hg19.chr2 I 1 C 0 s panTro4.chr2B 235472320 293 + 247518478 CCAAAAGACAACTCTATCTAAAAAAGATC-TTTTTAGAAGAATTAAAATCCAA-----ATGCCTGTCTGTTGTCACACTTTCC----AGGCTGTGTAGTTGGGGACCGGTTCTGCTCTGAGCCCATCTATGTGGCTCTTAGCCCTAGAATCACTTCAGGA-TCTCTGAATACTTGGTAGGAGGAAGTGAAAGCAGATGAGACCAAAC--AAAAAAGGCAAGCAGGTAGAGAGTGAGTGCTGCTTCT-GCTTTTTTTATTCTTCTGTTCTGGTATGTTTTACATATCTGGTCAGAGAAGTCTGGAAAT i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119423971 293 + 131632457 CCAAAAGACAACTCTGTCTAAAAAAGATC-CTTTTAGAAGAATTAAAATCCAA-----ATGCCTGTCTATTGTCACACTTTCC----AGGCTGTGTAGTTGGGGACCGGTTCTGCTCTGAGCCCATCTATGTGGCTCTTAGCCCTAGAATCACTTCAGGA-CCTCTGAATACTTGGTAGGGGGAAGTGAAAGCAGATGAGACCCAAC--AAAAAAGGCAAGCAGGTAGAGAGTGAGTGCTGCTTCT-GCTTTTTTTATTCTTCTGTTCTGGTATGTTTTACATATCTGGTCAGAGAAGCCTGGAAAT i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3626895 288 + 6458163 CCAAAAGACAACTCTGTCTAAAAAAGATC-TTTTTAGAAGAATTAAAGTCGAA-----ATGCCTGTCTGTTGTCACACTTTCC----AGGCTGTGTAGTTGGGGACCGGTTCTGCTCTGAGCCCATCTATGTGGCTCTTAACCCTAGAGTCAGTTCAGGA-TCTCTGAATACTTGGTAGGAGGAAGTGAAAGCA---GAGACCCAAC--AAAAAAGGCAAGCAGGTAGAGAGTGAGTGCTGCTTCT-GCTTTTTCTATTCTTT--TTCTGGTATGTTTTACATATCTGGTCAGAGAAGCCTGGAAAT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94022951 291 + 106825570 CCAAAAGACAACTCTGTCTAAAAAAGATC-TTTTTAGAAGAATTAAAATCCAA-----ATGCCTGTCTGTTGTCACACCTGCC----AGGCTGTGTAGTTGGGGACCAGCTCTGCTCTGAGCCCATCTATGTGGCTTTTAGCCCTAGAGTCAGTTCAGGA-TCTCTGAATACTTGGTAGGAGGAAGTGAAAG-AGATGAGACCCAAC--AAAAAAGGC-AGCAGGTGGAGAGTGAGTACTGCTTTT-GCCTTTTTTATTCTTCTGTTCTGGTATGTTTTACATGTCTGGTCAGAGAAGCCTGGAAAT i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146696255 293 + 158406734 CCAAAAGACAACTCTGTCTAAAAAAGATC-TTTTTAGAAGAATTAAAATCCAA-----ATACCTGTCTGTTGTCACACATTCC----AGGCTGTGTAGCTGGGGACCAGTTCTGCTCTGAGCCCCTTTATGTGGCTCTTAGCTCTAGAATCAGTTCAGGA-TCTCCGCATACTTGGTAGGAGGAAGTAAAAGCAGATGAGACCCAAG--AAAAAATACCAGCAGGTAGAGAGGGAGTGCTGCTTCT-GCTATTTTTATTTTTCTGTTCTGGTATGTTTTACATATCTGGTCAGAGAAGCCTGGAAAT i calJac3.chr6 I 1 I 11835 s equCab2.chr6 17824278 282 + 84719076 CCAAAAGACAGCTCCGTCCAGAAAAGGTCTTTTTTAGAAAGATTAACATTCAAGTTGAATGTCTGACTATTGTCAAACTTTTTCAAGATTCTGGGTAGTTGGGGGCCAGTTCTGCTCAGAGACCATCTATGTGGCCCTGAGCCAGCGAGT---------G-TCCGTGAGCACTTGATAGGTGGAAGTGAAAGTAGATGGTACCCAACGTGAACAACGTAATCAGCTGGGTGATGAGCGTTGCTTCT-TCTC--------------TTCTGGGATGTGTTACATGTCTGGTTAGAGAATGATGAAAAA i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4105128 8679 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=3061.000000 s mm10.chr1_GL456221_random 41077 5 + 206961 t--ctct s rn5.chr9 92349957 7 + 121549591 TCGCTTt i rn5.chr9 C 0 C 0 s hg19.chr2 231091251 5 + 243199373 --CATCT i hg19.chr2 C 0 I 10453 s panTro4.chr2B 235472613 5 + 247518478 --CATCT i panTro4.chr2B C 0 I 10462 s gorGor3.chr2B 119424264 5 + 131632457 --CATCT i gorGor3.chr2B C 0 I 10466 s nomLeu2.GL397366 3627183 5 + 6458163 --CATCT i nomLeu2.GL397366 C 0 I 4535 s rheMac3.chr12 94023242 5 + 106825570 --CATCT i rheMac3.chr12 C 0 I 11732 s equCab2.chr6 17824560 5 + 84719076 --TGTCT i equCab2.chr6 C 0 I 11052 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4105128 8679 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=85212.000000 s mm10.chr1_GL456221_random 41082 1517 + 206961 gtctctctgtctctgtctctgtcgctctctttctctctttctctctctctcactctctctctctctctctctctctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacacGATAggagagatggcccaggtttaagcactcgtattgccctagtagtgggcatgggttgggtccccagcaactatcctagggcttccaactgcatctcatgccaactccagatcagacagccttttctgccttccatggacactgtacttgcatgcaggaagcacactgagacagactcatgcatacataattcaaaataaaaatagaAAAGATGAGAGGAAGTTGTGATG-----------CCCCCAACAGGGACTCAGTCAGGGctacttctgctcctgcagatgtcctaagaaagtaccatttctcctgtgacatttggtcaagtccactagtgataccagcagtgtgctgtgtcttttgggaataaatagcgtggttaatcactggctcagtgcctttcatataagtaggtggaggt-atctgtctc--------tgagtgtttgcagtttctgtctttgaagacatttttgttgtggttatcaatctgacaggcgtagggatggctgcattaatctttgctacctttgcactgtctgtggaattcata----gcatgtgtctgtcttaccttcgctagcctgagtagagatttaataatgtattgatctttccaaagga-----------tgtgagcataatgcccacttcttttaattctatggatttctactttaatttcattgaatctttgtcttcattGGGATGAAATCACTCCTCATAAGATTGTTCATTTATGCCTCCCTTAGCTTCCGACATATACAAAGCTGTATGTTTCCCCTTAGCCACTGCCTTTGCTGTGTTTCAGATTTAA--TAATTTTTAGACTTCAGTGCTTTTTTAGTGTAGGAGAAAGGGTCACACTTTTGCTTGTCTTACCCCA-----TTAAAAAACATTACATTCATTTATTTATtgtatgtgtgcaggtgccacaatgtgtcttttgagatcagaggacaactttggggagttggctctctcctactaccatgtagtaagttcttaggggagcaagctcatgtccagagacttggtggcaaggcctgtatcagctgagccat--cctcccagacccTCTTTTATTTACATTAGTTACAGTTTTTAAATGTACTCTGTTTTATAATTGTGCTATTATTAAAT--------------------------------TATCCACATTTTGACTCATTATGGACACAGAGAaatacctaccatgtttgtaaatattttcattttactcttttttttttttggctttcctttctttttatgcccttttggttttagtaaaaca-ttttatgattctttcttccttCGTTtctctctctctctctctctctctctctctctctctctctctctctctttctttctTGAATTCCTTTACCTATTTTT-------TTGTTGTCTCATTTTGTTTTTCTTTTTTGCAGTACTGGGGATCAATTCTGGGG s rn5.chr9 92349964 1507 + 121549591 gtctctctgtctctctgtctctctgtctctctgtctgtgtctgtgtctgtctgtctgtctctctctctctctctctctctctctctctctctctctctctctctctctctc-------tTCCCCCGCATGCGCATGAGAggagagatggcccaggtttaagcactcatactgctttagtagtagac---------gtccccagcacccatccca-ggcttctaactgcctctgatgcccaactccgatcagacaccctcttctgccttccataggcgctgtatttacatgcaggaaacacaccgagacagacacatatatacataattcaaaataaaaacaaaAAAGATGAGACGAAGGTGT-ATGTAGCTAATTGCCCTCCAACAGGGACTCTCTTGGGGCAACTTCTGGTCCTGCAGACATCTTAAGAAAGCATCACTTCTCC-GTGacgtttggtcaaggccactagtgataccaacagcatgctgtgtcttttgggagtgagtggggtggttcattactggctcaatgtctttcttataagcctgttgaagtgatctgtctctcagagtgtgagtgtgtgctgtttctgtctttgaagacatttttgttgtggttatcaatccgacaggtgtaggaatggctgcatcagtctttactatcccttcactgtctgtgggattcatagtgtgtgtgtgtctgtctttccttcgtcagtctgactagagatttaataacgcattgatctttccaaaggagtagtttgtggtgtgagcagaacactcacttcttttaatcttatagatttctactttaattCCACTGAATCTTTGTTTTCATTGGGATGAAATTGCTCCTCATAAGACTG--CATTTATGCCTCTCTTACCTTCTGACATATACAAAGCTATGTGTTTTCCCCTAGCCACTGCCTTTGCTGTGTCTCAGATTTAATTTATGTTTTAGACTTCTGTGCTTTTTCAGTGTAGGAGCAAGAGTCGCACTTTTGCCTGTCTTCCCCCATAGGttttttaaaaatta----aatttatttattgtacgtgtacaagtgccacagtgtgtctgttgaggtcagggaacaaccttagctggctgattctctccttcaaccacg----gaggtctta-gggagcaagctcgtgtccgcagactcggtggcagggcctgtatcagctgagccatccccccCCAGCGCCTCTTCTACTTATACTAGTTGCAGTTTTCAAACATA--CTGTTTTATTATCGTGCtattattaaatataatatataattaaatttCCAAATAAATGGAAAATCACATTTCCACTGATAATGGACACAGAGAAACACCTATCATGTTTGTAAATATTTTCATTTCACTC--TTTTTCTTTTGACTTTCCTTTCTTTTTGTGCTCCTTTGGTTTTAGTAAAACATTTTTATGAT------------------------------------------------------------TCTTTTTCTCAGGAACTCCTTTATCAATTGTTATTATTATTTTTGTTTCATTTCGTTTTTCTTTTTTGCAGTACTGGGGATTGATTCTGGGG i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4105128 8679 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e equCab2.chr6 17824565 11052 + 84719076 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=8720.000000 s mm10.chr1_GL456221_random 42599 74 + 206961 ATTCTCTTGAGAATGATTTTTGGAGAAACTTTCATATCT--TGTCTCTGTT-TTTTCT----------AAACAATGTGTGAGCATGT s rn5.chr9 92351471 76 + 121549591 ATCCTCTTGAGAATGGATTTTGGGGAAACTTTCATATCTTATGTCTCTGTT-TTTTCT----------AAACtgtgtgtgtgtgtgt i rn5.chr9 C 0 I 996 s speTri2.JH393335 4113807 79 - 10418462 ATTTTCCTATGAAT---TTTTTTGGTCTTTCTTATAACTTATGTCTCTTTTGTTTTCTGCATTAGAGAAAACAACAGGTGCA----- i speTri2.JH393335 I 8679 C 0 s equCab2.chr6 17835617 78 + 84719076 ATCTTCTTGCTTGTGAATTTTTTAGCACTTCTTATATATTATGCCTCTTCA-TTTTCT-----TAAGAAAACAGTATGTTTTAT--- i equCab2.chr6 I 11052 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=26129.000000 s mm10.chr1_GL456221_random 42673 166 + 206961 TCGCTGCTTATTACTTCATGGCATTTG-TAGTTTAGTTTTGACACT-TTGG-CACTTTTGTA-TTTCTGACTAATTTGC-----TGCAT-TTTCTAGTTGGATCAGTGCATCACATGTGAAACTGCAGTATTTGAATTTACCGTCTGTGAAATAATT--TAGTTCCAACTCAGATTTT s rn5.chr9 92352543 167 + 121549591 TCACTGCTCACTGTCTTGTGGCACTGGGTAGTTTAGTTTTGACACC-TTGG-TACTTTTGTA-TTTCTGATTAATTGGC-----CGCAT-CTTCTAGCTGGGTCAGAATGTCAAATATGAAGCTGCAGTATTTGGATTTACCATCTGTGAAGTAATT--TAGTTCCAACTCAGGTGTT i rn5.chr9 I 996 C 0 s speTri2.JH393335 4113886 169 - 10418462 --GTTTTTCATTATTTTGTAAGCTTTG-TAGTCTCATTTTGACTCTATTGGTTACTCTTGAGTTTTCTAGTTAATTCTC-----TCTATATCTCTAGTTGGTCTATAGTATCAAATGTGAAACAATATCATTTAAATTCATT-TCACTCAATTTTTTACTAGTACTCACTCAAATTTT i speTri2.JH393335 C 0 I 2681 s equCab2.chr6 17835695 164 + 84719076 TTACTG-TTATCCTTTTATGAGCCTTA-CAGTCTCATTTTGACTCT---GT-TACACTTAGATTTTCtaattaattatttaatatatatttCTCTAATTG----ATAGCATCAAATGTGCAACCATGTCATTTGAGTTTAGTGTTTTTGAAATAAAT--CA--TTTAACTCAGTTTTT i equCab2.chr6 C 0 I 39 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=13641.000000 s mm10.chr1_GL456221_random 42839 248 + 206961 ATGGGgagttcatttcagattca--------acatgaaaccagggtgtagaggtgtgtg-tttttaactccagaattagggaaatatagacagttggatccccggagatgactggccagctaatctggctgaactaatgatatccgggttcagtgagagaccccatctcaaaaca-taaggtggagagcaactgGACTCCTTGCCCAGGCATATGCCAGGCACATACACACGAGCAAGCACATATACATAGCCAGCCT s rn5.chr9 92352710 242 + 121549591 atggggagctcagttcagatccctagaacccacatgaaacctggatgtggtggtgtgtgctttttaacttcagaattaggggg-tggagacagttgggtccctggagatgactggc-------------tgaattaatgatattggagttcagtgagagaccttgtctcaaaaaaataaggtggagaacaactggactccttgcacagacatactccaggtacatagacatgagca--cacacatacataGACAACCT i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4114055 2681 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e equCab2.chr6 17835859 39 + 84719076 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=6676.000000 s mm10.chr1_GL456221_random 43087 120 + 206961 CCTTAAGtttaaaataaaaattattgtatatttttat-atGTTACTACTTATAAATTTTAGGTTCTTTAAAAAAAAGACCCTCTCAAGATTTTTTTGGTAACAGATAACTTTGATATTCTT s rn5.chr9 92352952 83 + 121549591 CCTTAAGTTTAAGATAAAAATTATTGTATAGTTTTGTCATATTATGAC--------------------------------------AAGATTTTTTGGTATCAGATGACTTGGATATGCTT i rn5.chr9 C 0 C 0 s equCab2.chr6 17835898 114 + 84719076 tctgaagttttagattaaaattat--tataattttaCCATTACATGAAGTATATATCCT---TTCTTTCTAGAAcagtgcttct--taaattttttggtttcaggatccctctatattctc i equCab2.chr6 I 39 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4114055 2681 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=8057.000000 s mm10.chr1_GL456221_random 43207 145 + 206961 TGTGTTTGTTTGTtgtgtagtcctgactagtctggaacttgctatatagaccaggctggccttgaattcatggagatcctcctgcctcctgcctctgcctcctacgagctgtgattaaaggtgtgcataaccacaccTcttttaa s rn5.chr9 92353035 131 + 121549591 TGTGTTTGTttattgtgtactcctgactagcctggaactcactatatagaccaggctggcctagaattcatggagatcctcctgcct---gtctctgcctcagacatgctatgattaACA-----------Cacccctttttctt i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4114055 2681 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e equCab2.chr6 17836012 0 + 84719076 C e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=53068.000000 s mm10.chr1_GL456221_random 43352 467 + 206961 aagaattatggagaaccccaaa-agctatctcttg-------gtgttaaatttaatgagatttaccattaattataagttacagcttcagccatttagaatattta-tccattaaaagtagtaccaaagagttcatcatt----atcacaagtg-tgcatcctaatgaaaaataacaagattttctaaaataaaattaa--aggggaagatacaatcttgctt--tagcttctcacaaatgtccttactttcctgcttggtcaaagtc--acaga-tgccctgtttatctctgagttcagtctgctacgatgccacagcccacaggcacct-gtgaatatcacccaacatttttgggcagaggaaagagaaaaggggcagatggtatttcaggattgttctgagaa-tagtttgttctttttggcatctgaaagagtcttgagcag------gggtcgtcaggctataccctgagaGGCACCATTCTCAACTGCTT s rn5.chr9 92353166 475 + 121549591 aaaaattatggagaaccctaaa-agctatcttttg-------gtgttcaatttaatgagatttaccattaattataaattaaagcttcagacatttagaatattca-tcccttaaaaatagcagccacaaattcatcacc----atcacgagtgatgcaacctaacagaaaataacaatattttctaaaataaaattaa--agggaaagatataatcttgctt--taccttctcgcaaatgtccttactctcctgcttggtcaaagtc--ccagactgtcctgtttacctcttcgttcagtctgcagtgatgccacagcccatgggcatct-gcgaatcccacgcaacactcttgggaggaggaaagggagaaagggcaagtggtatttcaggatggttctgagaa-tggtgtgttcgcgttggcatctgaaagagtcttgagcggtgttggggttcctcagactacacctcgagagtcATCATTCTCAGTTATTC i rn5.chr9 C 0 C 0 s equCab2.chr6 17836012 492 + 84719076 aaatattattgagaaccccaaagagctagcttttgttcatgtgggttatatctattgatatttatcac--attagaaattaaaagtttgaaaacttaaaatacttagtcatttaaaaataataataatgaactcattacctactaacatcaatggcatatttt-atgagaaataactatgtttttcaaaataaaataaattagcaagaggattagcaatgtttcacagtttttttcaaaccttttta-tagctggttcagtagaagacagccagattctcctatctgcctctgcattcgatctgttgtgataccacaggccataattctttggaaaatcccactatatgcttgtgagaggatgagagagaaaaagaataaataacatgttagtatcattatgaaaactgttttgactttgatgccacctgaaagggttttgcataatcccaagggtccttggcctacgctttgagaatcactgTTTTAAAGTAATT i equCab2.chr6 C 0 I 2705 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4114055 2681 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=91935.000000 s mm10.chr1_GL456221_random 43819 1449 + 206961 AGCATGTAGGTATTGGCATTTTAAGTGCTTAAAAAAAAGACACATCTTCAGTGGCAGCAGGAGGGgatgtgctgatgtggatgggagaaatctcacaagactccattcctagatgaagagccatag-ctattaatggctgttaacaaagagaaaatcaaccagtattctccaggaatgaaccctctgttaggttatccagtgcttagtggtcagccctaaacacacatgcataggag-----------------tgcaggttgtatgtatgtgtgtgtgtgtgcgcgcgcgcatgtgtgt---------------------------------------------------------tatgtatatatgtgtgtgtttatatataaaacaataattagagatggttttgagagaaagtgagaaaggaaggcatgaggggattgaaaagaaaagggagcaggagaaacgatgtaaACACAGTATTCATGTATGaaaatttaaaaatatatataaacatttaaaataaaCAAAAGGAAAACATGTGCCCCAATTTATTTGATTTAGTTTTCTTGTTAATT----ATTTAGGTTAGCATGAAAATGATGGGTCTCCGCATGGCATCTTCATACTTA--------------CATACCCTATTTTTGCTCATTCCCTTCCCCTcttgcaggagttggttctgttctactgtgtaggtcccaggattgaactcagggcattaaactataaggggaggacatttatccatggaatcttctcaccagctcTCCTTCCCCCCTTTTTTGTTTTAGAAATTGATTTAtttcttcattatttgagacaaggtttcactgtatagcccaggcaaaccttgaagtcactagataagggccaacaggttgcctcagtggataaaggtcctgaccaggcactgggacctgagtttgatgcccagaacccatacaagagtgaaaacagagaaccaactcctcaaagttgtcctctgatgtctaaatatgcAGATATTGTAACAATACTAACACTAGGTAAAGTGAAAAAGAGGAAGTCGCTATGTCGGCCATGAAGGTAGGATGCTGTGACGACAGGCATTGGACCATGCCCAGATGATTTCTCACTTCTGTTATATGAACATACATCATAATTGGTTTCCATTTGCCACCCAGAATGGGATCAATTACA----CAAACACTCCTATGTGTCATTGGGCTTCTTGGGCCTTTTGTTCTCAGAGGATCTTCTCCCTAAACACTGTCTCTGGACAGAGAGAACTGGCCACCTGAGATGTCAGGCATTGCAG-CAGCAGTGTAGTTAATAAGTGC------------------GAGACTCCATTACTGTAAGAGATAGGGAACCAGGAGGAGAGAAGAAAGCATGTGGAACCATGGATGAACCACACATGAGCCACACATGTCTCAGTCCTGGGTCAACTGCATTGCCTTTACAAATGAGCTGGAAGAAGAGGTTCTGCTTTTTTATTTTAATGTCATTTCCATTTACCCTGAGGTCTATAGATTGTGTTCCAGTTTCAtttct s rn5.chr9 92353641 1519 + 121549591 AGCATGCAGGTATTGGCATTTTAAGTGCTTAAAAAAGGGATGTGTCTTCAGTggcagcaccaggcgatgtgctggtgtggatgggagaaatctcacaaggctccacccctagatgaagagctgtaggcaataaatggctgttaagaaagagaaaatgcaccagtattctccaggaatgaaccctctgttaggttatgcagtgtctggcgggcagccctaaacacatatgcatgcgagcaacattacatgaactctgcaggttgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtacgcacggatgtatgtatgcatgtgtatatgtgtgtatgtatacatatatgtatttatatgtatatgtgtatatatatatgtaacaataattaaaaatggttttgaaaggaagtgggaaaggaaggcatgagaggattgagacaaaaagggggcaggagaaatgatgtaaatacagcattcatgcatgaaaattttaaaa-ataTATGAACATTTAAAATAAATGAAAGGCAAACATGTGCCCTGATTTATTTGATTTAGTTTTCTTGTTAATTGATTATTTAGGTTAGCATAAAAATGATGGGCCTCAACATGGCATCTTCATACGTATTTACTGCATACTTCATACTGTATTTTTGCTCATCTCCTCCCCCTcttgcaggacttggttctctcctacactgtgggtcccaagattgaactcaggccattaaactata-gggaaggacatttgcccactgaaccttcccaccagccTTCCTTCCCCCTTTCTTTGTATTAGAAATTGACTTCTTTCTTCAtt----gagacaaggttttgccgtatagcccaagtgagccttgaagtcactaggtaAgggccaacaagatgcctcagtggataaaggttctgtctaggcaccaggacctgagtttgatgcccagaacttacccaagagtgaaaagagagaaccaaatccacaaagttgtcctcagacctctacatgtgcAGATATTATAACCGTACTAACACTAGGTAAAATTAGAAAGA---AGTTGCTATGTTGGCCATGAAGGCAGGATGCTGTGACTACAGGCATTGGACCATGCCCAGATGATTTCTCGCTTCTGTCACTGAACTATATGTCATAATTTGTTTCCGTTTGCCACCCAGAATGGCGTCAATTACATGAACAAACACTCCCATGTCTCATTGGACTTCT--GGGCTTTTTTTCTCAGAGGATCCTCTCTCTAAACACTGTCTCTGGGCAGAGAGA---------------TATCAGGCACTGTAGAGAACAGCATGGCTAATAAGTGCTGGTTTTGAGGTGGTAGAGAGGCCCCGTCACTGAAAGAGGTGGGGAACCAGGCGGAGAGGAGAAAGCATGTGCAACTATGGATGAGCCACAC-------------GTCTCAGTCCTGGGTCAACTGCTTTGCCTTTACAAATGAAATGGATGAAGAGGGTCTGCTTTTTC-------TTGCATTTCCACTTACCCAGAGGTCTATAGATGGtgttccagtttcatttct i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4114055 2681 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e equCab2.chr6 17836504 2705 + 84719076 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 45268 189 + 206961 ttctttctttctttctttttttttttATTtttggttttttcgagacagggtttctctgtatagccctggctgttctggaactcactttgtagaccaggctggcctcaaactcagaaatcagcctgcctctacctcctgagtgctgggattaaaggtgtgtgccaccacgcccagcCCagtctcatttct e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4114055 2681 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e equCab2.chr6 17836504 2705 + 84719076 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I e rn5.chr9 92355160 0 + 121549591 C a score=25998.000000 s mm10.chr1_GL456221_random 45457 384 + 206961 gttgctgtgatagcatacactgacacaaagcaacttaggggagaaagaa-------------caggtccaggttacaggccatcattgcaggaaagtctaggtgggaacttgaagcagttggtcatgtccacagtcaagagcagagagcaatgagtacaagcgtgcctgtcagtgttcaacttgctccctacacttaatgccaccaagccatttccttttacctagggattggtgctacccacagtgcactggatctttccatatcaactagcataatgcggacaaccctggacagaaatacccagagattaccctaatctagacaatcctttattaagactcatacaatccaagatgattatagattgtgtcaggttgacaattaaaactaatcaC s rn5.chr9 92355160 382 + 121549591 gttgctgcgataacataccctgatataaagcaatttaggggaggaaaaaacctattagcccacaggtccaggttacaggtcatcgttgcaggaaagtcta----------tgaagcagttggtcatgtccacagtcaagagcagagagtaatgaatgcaagtgtgcctgtcagtgatcaacttgctccctacactcg-tgccacccagg-atgccct---acctagtaattgatgctgcccacagtggactggatctttccatatcaaccagcagaatgaggacaaccctggacagacatacccatagaccactctaatctagacaatcctttattaagactgacacaattcaagatggttatagattatgtcatgttgacaattaaaactaatcac i rn5.chr9 C 0 I 195 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4114055 2681 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e equCab2.chr6 17836504 2705 + 84719076 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=9134.000000 s mm10.chr1_GL456221_random 45841 181 + 206961 AGTActggacatgatggaacataatttaaatctgagcactcaggcagcagaggcaggtgaaatctatgtgtgaggatagccttgtctacatagtaacttttaggcaagccagacttacagatgataaccctgtcccgagcaaatcaaaCTCAAAGCACCAGAACTTGATCACTAAATGAGA s rn5.chr9 92355737 175 + 121549591 AGTGTTgggcatggtggagcatgatttgaa-ctgagttctcaggagacagaagcaaatgaaatct--ccatgaggacaaccttgtctacatagtaacttccaggcaagccagacttacagttggta-cccagtcccaaacaaaccaaaCCCAAAGCATCACAACATA--TATTATAGTAGA i rn5.chr9 I 195 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4114055 2681 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e equCab2.chr6 17836504 2705 + 84719076 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=2902.000000 s mm10.chr1_GL456221_random 46022 22 + 206961 TGtttaaaattttaattttata s rn5.chr9 92355912 22 + 121549591 TGTTTAAAATTTTAATTTTACG i rn5.chr9 C 0 C 0 s equCab2.chr6 17839209 22 + 84719076 TATTTTACATGTTGGTTCTCCA i equCab2.chr6 I 2705 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4114055 2681 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=439.000000 s mm10.chr1_GL456221_random 46044 6 + 206961 ttaGCA s rn5.chr9 92355934 6 + 121549591 TTAGCG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4116736 6 - 10418462 TCAACT i speTri2.JH393335 I 2681 C 0 s equCab2.chr6 17839231 2 + 84719076 ----CT i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94023247 11732 + 106825570 I e nomLeu2.GL397366 3627188 4535 + 6458163 I e gorGor3.chr2B 119424269 10466 + 131632457 I e panTro4.chr2B 235472618 10462 + 247518478 I e hg19.chr2 231091256 10453 + 243199373 I e calJac3.chr6 146696548 11835 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=728905.000000 s mm10.chr1_GL456221_random 46050 254 + 206961 GACCAGTCTTCATGTCAGTAATTATCCAGCCATTGGTAGCATCTTGTAAAC-CAGTATCTACTTCTGCATGG--AATCTGTCCCCTAGGACAATCCCAGAGGACC---------------AGAATGAAG---------------AGGAGTCAGATAACTATCAGCTCATGTTCAAGCACTTCAAAGAAAACAAGGTGGAGATCGCAAGTGCCATCACCAAGCCGTTTCCTTTCCTCATGAGCCTTCGAGACCGAGACTTCATCTCGGAGCAGAAGTTTCAGGTGAGT s rn5.chr9 92355940 253 + 121549591 GACTATCCTTTGTGTCAGAAATTATCCAGCTATTGGTGGCGTCTTGTAAAC-TGGTATC-AATTCTGCATGG--AATCTATCCCTTAGGATGATCCCAGAAAACC---------------AGAATGGAG---------------AGCAGTCAGATGACTATCAGCTAATGTTCAAGCTCTTCAAAGAAAACAAGGTGGAGATTGCAAGTGCCATCACCAAGCTATTTCCTTTCCTCATGAGCCTTCGAGACCGAGACTTCATCTCGGAGCAGAAGTATCAGGTGAGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4116742 256 - 10418462 GACCTTCCTGCATGTCTAAAGTCATC--------ACCAGCCTCTTGGAAGCTCAGTATC---TGTCGTAT-----CTTTGTTTCGTAGGGTGGCCACAGAGCTCCCCAGGATGGAGTTCGAGAACAGAG---------------AGGAGCAGTTTTTGCATGAACACCTTTTCAGGCATTTCAAAGAAAACAAGGTGGAGATTGCGAGTGCAATAACCAAGCTGTTTCCTTTCCTCATGAGCCTCCGAGACCGCGCCTTCATCTCTGAGCAGATGTTCGACGTAAGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231101709 272 + 243199373 ggccatccttcatgtctaaaatcttctAACCACCACAAACCTCTTGGAAACTCAGTGTCTACTTCCACGTTGTATCTTTGTTTCTTAGGATGGTCGCAGAGATCC---------------AGAACGTAGAGGGTCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAAAACAAGGTGGAGATTGCAAGTGCAATAACAAGGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCCGAGCAGATGTATGAAGTAAGT i hg19.chr2 I 10453 C 0 s panTro4.chr2B 235483080 269 + 247518478 ggccatccttcatgtctaaaatcttctAACCCCCACAAACCTCTTGGAAACTCAGTGTCTACTTCCACATTGTATCTTTGTTTCTTAGGATGGTCGCAGAGATCC---------------AGAACGTAGAGGGTCAGA---TGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAAAACAAGGTGGAGATTGCAAGTGCAATAACAAGGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCCGAGCAGATGTATGAAGTAAGT i panTro4.chr2B I 10462 C 0 s gorGor3.chr2B 119434735 272 + 131632457 ggccatccttcatgtctaAAATCTTTTAACCACCACAAACCTCTTGGAAACTCAGTGTCTACTTCCACGTTGTATCTTTGTTTCTTAGGATGGTCGCAGAGATCC---------------AGAACGTAGAGGGTCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAAAACAAGGTGGAGATTGCAAGTGCAATAACAAGGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCTGAGCAGATGTATGAAGTAAGT i gorGor3.chr2B I 10466 C 0 s nomLeu2.GL397366 3631723 272 + 6458163 ggccatccttcatgtctaaaatcttctAGCCACCACAAACCTCTTGGAAACTCAGTGTCTACTTCCACGTTGTATCTTTGTTTCTTAGGATGGTCGCAGAGATCC---------------AGAACGTAGAGGGTCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAACACAAGGTGGAGATTGCAAGTGCAATAACAAGGCCATTTCCTTTTCTTATGGGCCTCCGAGACCGCTCCTTCATCTCTGAGCAGATGTATGAAGTAAGT i nomLeu2.GL397366 I 4535 C 0 s rheMac3.chr12 94034979 272 + 106825570 GGCCATCCTTCATGTCTAAAATCTTCTAGCCACCACAAACCTCTTGGAAACTCAGTATCTATTTCCACGTTGTATCTTTGTTTCTTAGAATGGTCACAGATATAC---------------AGAACACAGAGGATCAGAACCTGCAGGAGCAGGTTTGCCCTGAGCCCATTTTCAGGTTCTTCAGAGAACACAAGGTAGAGATTGCAAGTGCAATAACAAGACCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCTGAGCAGATGTATGAAGTAAGT i rheMac3.chr12 I 11732 C 0 s calJac3.chr6 146708383 272 + 158406734 gaccacccttcatgtctaaaatcttctAGCTGCCACAAACCTCTCGGAAACTCAGTGTCTATTTCCGCATTGTATCTTCGTTTCTTAGGATGGTCACAGAGATCC---------------AGAACGTAGAGGGTCAGAACCTGCAGGAGCAGGTTTTCCCTGAGCCCATTTTCAGGTTCTTCAGGGAACACAAGGTGGAGATTGCAAGTGCAATAACAAGGCCATTTCCTTTCCTTATGGGCCTCCGAGACCGCTCCTTCATCTCTGAGCAGATGTATGAGGTAAGT i calJac3.chr6 I 11835 C 0 s equCab2.chr6 17839233 272 + 84719076 GACGATCTTTCATGTGTAAAATCTTCCAGCCAACACAAGCCTCTTGGAAACTCAACGTCTACTTTCATAACATATCTTTGTTTCTCAGGATGTTCCCAGGCGACC---------------AGAATCCAGAGGACCAGAACTCTGTGGAGCAGTTTTTCTCTGAGCTCATTTTCAGGCTATTCAAAGAAAATAAGGTGGAGATTGCAAGCGCAATAACGAAGCCATTTCCTCTCCTTATGGGCCTCCGGGACCGCGGCTTCATCCCTGAGCAGATGTATGAAGTAAGT i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=100.000000 s mm10.chr1_GL456221_random 46304 1 + 206961 G s rn5.chr9 92356193 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4116998 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s equCab2.chr6 17839505 1 + 84719076 G i equCab2.chr6 C 0 C 0 s choHof1.scaffold_73806 7714 1 + 8270 G i choHof1.scaffold_73806 N 0 I 93 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94035251 0 + 106825570 C e nomLeu2.GL397366 3631995 0 + 6458163 C e gorGor3.chr2B 119435007 0 + 131632457 C e panTro4.chr2B 235483349 0 + 247518478 C e hg19.chr2 231101981 0 + 243199373 C e calJac3.chr6 146708655 0 + 158406734 C e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=114792.000000 s mm10.chr1_GL456221_random 46305 65 + 206961 TGGAGAATGAACTCAGTCCTGACAGCAAGCCTGCCCTGTGCTGTATCATGCTGTACTTCTGGGTG s rn5.chr9 92356194 64 + 121549591 TGGGGAATGAACTCAGTCCTGACAGCAAGCCTGCCCCGTGCTGTATCATGCTGAACCTGT-GGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4116999 59 - 10418462 AGGGGAATTTCCTCAG----GACCGGAAACCAGCCCCACACTGCATGATGTCAGACTTCG-GGT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231101981 59 + 243199373 --AAGAATTTCCAAAT----GATGATAAACCAGGTCCATACTCAATTATGCCAAACTTCAAGATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483349 59 + 247518478 --AAGAATTTCCAAAT----GATGATAAACCAGGTCCATACTCAATTATGCCAAACTTCAAGATG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435007 59 + 131632457 --AAGAATTTCCAAAT----GACGATAAACCAGGTCCATACTCAATTATGCCAAACTTCAAGATG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3631995 59 + 6458163 --AAGAATTTCCAAAT----GATGGTAAACCAGGTCCATACTCAATTATGCCAGACTTCAAGATG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035251 59 + 106825570 --AAGAATTTCCAAAT----GATGGTAAACCAGGTCCATACTCAATTATGCCAAACTTCAAGATG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146708655 59 + 158406734 --AAGAATTTCCAAAT----GATGGTAAACCAGGTCCACACTCAATTATGCCAAACTTCAAGATG i calJac3.chr6 C 0 C 0 s equCab2.chr6 17839506 56 + 84719076 AGGGGAATTTCCTCAT----GCT----AACCAGCCCCATGCTATATTGTGCCA-ACTTCAGGATG i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e choHof1.scaffold_73806 7715 93 + 8270 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 63519 27938 + 176633 I a score=2395.000000 s mm10.chr1_GL456221_random 46370 1 + 206961 T s rn5.chr9 92356258 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231102040 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483408 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435066 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632054 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035310 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146708714 1 + 158406734 C i calJac3.chr6 C 0 C 0 s micMur1.scaffold_3075 91457 1 + 176633 T i micMur1.scaffold_3075 I 27938 I 15683 s equCab2.chr6 17839562 1 + 84719076 C i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4117058 0 - 10418462 C e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e choHof1.scaffold_73806 7715 93 + 8270 I e dasNov3.JH566347 1745429 56161 + 1805508 I a score=33146.000000 s mm10.chr1_GL456221_random 46371 14 + 206961 AGCCAACAGGCTGA s rn5.chr9 92356259 14 + 121549591 AGCCAACAGGCTGA i rn5.chr9 C 0 C 0 s hg19.chr2 231102041 14 + 243199373 AATGAGCAGGCTAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483409 14 + 247518478 AATGAGCAGGCTAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435067 14 + 131632457 AATGAGCAGGCTAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632055 14 + 6458163 AATGAACAGGCTAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035311 14 + 106825570 AATGAACAGGCTAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146708715 14 + 158406734 AATGAACAGGCTGA i calJac3.chr6 C 0 C 0 s equCab2.chr6 17839563 14 + 84719076 CATAAATAGGCTAA i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4117058 0 - 10418462 C e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e choHof1.scaffold_73806 7715 93 + 8270 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=7497.000000 s mm10.chr1_GL456221_random 46385 2 + 206961 AG s rn5.chr9 92356273 2 + 121549591 AG i rn5.chr9 C 0 C 0 s hg19.chr2 231102055 2 + 243199373 AG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483423 2 + 247518478 AG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435081 2 + 131632457 AG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632069 2 + 6458163 AG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035325 2 + 106825570 AG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146708729 2 + 158406734 AG i calJac3.chr6 C 0 C 0 s equCab2.chr6 17839577 2 + 84719076 AG i equCab2.chr6 C 0 C 0 s choHof1.scaffold_73806 7808 2 + 8270 GG i choHof1.scaffold_73806 I 93 I 40 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4117058 0 - 10418462 C e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=49070.000000 s mm10.chr1_GL456221_random 46387 21 + 206961 CACCTCCAGGGATGAAGGGAC s rn5.chr9 92356275 21 + 121549591 TGCTTTCAGGGAGGAGGGAGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117058 13 - 10418462 --------GGCAATGGGGACC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102057 21 + 243199373 GGCCTCCTGTGAGTGGGGACC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483425 21 + 247518478 GGCCTCCTGTAAGTGGGGACC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435083 21 + 131632457 GGCCTCCTGTGAGTGGGGACC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632071 21 + 6458163 GGCCTCCTGTGAGTGGGGACC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035327 21 + 106825570 GGCCTCCTGTGAATGGGGACC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146708731 21 + 158406734 GGCCTCCTGTGAGTGGGGACT i calJac3.chr6 C 0 C 0 s equCab2.chr6 17839579 21 + 84719076 GGCCTCCAGTGAGTGGGGACC i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e choHof1.scaffold_73806 7810 40 + 8270 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=178565.000000 s mm10.chr1_GL456221_random 46408 76 + 206961 ATCACCT--TTGTAAG--TCAGAAGATAACTGGAGGGATAGACATCACAGGAACCATTTAC----ATTCACCTCTGCAGTAACT s rn5.chr9 92356296 72 + 121549591 TTCACTT-CTTGTAAG--TCAGAAGATAACCAGAGAGGCAGATGTCACAAGGACCATTTAC----AT---CTTCTGCAGTAA-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117071 70 - 10418462 TTTGCCA--TCCT--G--TCGGGAGGCAGTGGGAGAAGCAGGCATCACAGAAAATA-TTGC----TT---TTTCTGCAGTAACT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102078 74 + 243199373 TTCACCATTCTGTAGG--TTAGGAGGTGACAGGAGAAGCAGGCATCACAGAAAACC-TCCC----TT---CTTCTGTAGTAAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483446 74 + 247518478 TTCACCATTCTGTAGG--TTAGGAGGTGACAGGAGAAGCAGGCATCACAGAAAACC-TCCC----TT---CTTCTGTAGTAAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435104 74 + 131632457 TTCACCATTCTGTAGG--TTAGGAGGTGACAGGAGAAGCAGGCATCACAGAAAACC-TCCC----TT---CTTCTGTAGCAAAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632092 74 + 6458163 TTCACCATCCCATAGG--TTAGGAGGTGACAGGAGAAGCAGGCATCATAGAAAACC-TCCC----TT---CTTCTGTAGTAAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035348 74 + 106825570 TTCATCATCCTGTAGG--TTAGGAGGTGACAGGAGAAGCAGGCATCACAGAAAACC-TCCC----TT---CTTCTGTAGTAAAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146708752 74 + 158406734 TTCACCATCCTGTAAG--TTAGGAGGTGATAGGAGAAGCAGGCATCACAGAAAACA-TCCG----TT---CTTCTGTAGTAAAC i calJac3.chr6 C 0 C 0 s equCab2.chr6 17839600 72 + 84719076 TTCACCT-CCTACAAG--TTAGTGGCTGACAGGAGAAGT-GGCATCGCAGAAAACA-TTCC----TT---CTTCTGGAGTAGAT i equCab2.chr6 C 0 C 0 s choHof1.scaffold_73806 7850 78 + 8270 --AATATTCCTGTAAAGTTAAAAAAGTGAGAGGAAAAGTAAGCATCACTAAAAGCA-TCCCAGCTTC---TCTCTGAAGGAACT i choHof1.scaffold_73806 I 40 N 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=154789.000000 s mm10.chr1_GL456221_random 46484 120 + 206961 GAG-GCTGAGGCACATGGT--GACA------GCGACGAATAGCAAGCAGGAATGCTCCGA-AGTGCAGAGCATCCCAGGGTCACTTGTGTAATGTAACAACAGATACTAGGATGCAAGTAGACA-------------------------------------------------------------------------------------CACCTA s rn5.chr9 92356368 111 + 121549591 -----CTGAGGCACATGGT--GACA------GTGATGGATAGCAAACAGGAATGCTCCAA-AGT-----GCATACCAGGGTCACTCGTGCAATGTAACAACAGAAACCAGGATGCACATAGACA-------------------------------------------------------------------------------------CATCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117141 118 - 10418462 GTT-AGTGGGG-AGGTGATGGGAGA------GGGCAGGCTGGGGAGCAGGAATACTTCCT-AGTGCAGAGCATCTTA-GGTACTTTATGCAA-ATACTAACGCAAACTA-AAGGTAGATTAAGG-------------------------------------------------------------------------------------GACCCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102152 131 + 243199373 GTTGGGGGAGGGCCACAGT--GAGGGAGGTGGGGCAGGAGAGAGAATGGGAATGCTGTATGGGTGCAGATCATCCTAGGTACTTGTAAACAATCTACTAATGGTAGCCATAATTAAAATAAATAAGT----------------------------------------------------------------------------------GACCTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483520 131 + 247518478 GTTGGGGGAGGGCCACAGT--GAGGGAGGTGGGGCAGGAGAGAGAATGGGAATGCTGTATGGGTGCAGATCATCCTAGGTACATGTAAACAATCTACTAATGGTAGCCATAATTAAAATAAATAAGT----------------------------------------------------------------------------------GACCTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435178 131 + 131632457 GTTGGGGGAGGGCCACAGT--GAGGGAGGTGGGGCAGGAGAGAGAATGGGAATGCTGTATGGGTACAGATCATCCTAGGTACATGTAAACAATCTACTAATGGTAGCCATAATTGAAATAAATAAGT----------------------------------------------------------------------------------GACCTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632166 127 + 6458163 GTTGGGGGAGGGCCACAGT--GAGGGAGGTGGGGCAGGAGAGAGAATGGGAATGTTGTATGGGTGCAGGTCATCCTAGGTACATGTATACAATCTACTAATGGTAGCCATAATTA----AAATAAGT----------------------------------------------------------------------------------GAGCTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035422 130 + 106825570 GTTGGGGGAGGGCCACAGT--GAGGGAGGT-GGGCAGCAGAGAGAATGGGAATGCTGCATGGGTGCAGATCATCCTAGGTGCATGTATGCAATCTACTAATGGTAGCCATAATTAAAGTAAATAAGT----------------------------------------------------------------------------------GAGCTA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146708826 119 + 158406734 GTT-GGGGAGGGGCATGGT--GAGGGAGGTGGGGCAGGACAGAGAATGAGAATGCTGTAT-------GATCGTCCTAGGTA-ACGTATACGAT---CTAATGATAGCCAAAATTAAAGTATGTAAGT----------------------------------------------------------------------------------GAGCTC i calJac3.chr6 C 0 C 0 s equCab2.chr6 17839672 212 + 84719076 GTTGGTGGAGGGCCATGGT--GATGGAGATGTGGCAGGATTGGAAATGGGAATACTACATAGGTACAGAACATCTTAGGTACATA-ATACAATATAATAACAACAACTAAAAATAAAGTAAATAAggggctggccctgtggccaagtggttaatttcacacactctgcttcggcggcccagagtttcgctggtttggatcctgggcccagaccta i equCab2.chr6 C 0 I 215 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=26328.000000 s mm10.chr1_GL456221_random 46604 14 + 206961 AGCTGGGCTGCCTT s rn5.chr9 92356479 14 + 121549591 AGCAGCACTGCCTT i rn5.chr9 C 0 I 332 s speTri2.JH393335 4117259 14 - 10418462 AGCACTGCTTCATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102283 14 + 243199373 GGCAGCATTTTATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483651 14 + 247518478 GGCAGCATTTTATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435309 14 + 131632457 GGCAGAGTTTTATT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632293 14 + 6458163 GGCAGCGTTCCATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035552 14 + 106825570 GGCAGCGTTTCATT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146708945 14 + 158406734 AGCAACATTTCATT i calJac3.chr6 C 0 C 0 s equCab2.chr6 17840099 14 + 84719076 AGCCAGGCTACATT i equCab2.chr6 I 215 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=-646.000000 s mm10.chr1_GL456221_random 46618 1 + 206961 C s speTri2.JH393335 4117273 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102297 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483665 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435323 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632307 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035566 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146708959 1 + 158406734 A i calJac3.chr6 C 0 C 0 s equCab2.chr6 17840113 1 + 84719076 C i equCab2.chr6 C 0 I 5 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92356493 332 + 121549591 I a score=970154.000000 s mm10.chr1_GL456221_random 46619 458 + 206961 CAAAGCCTACTTACTCCAAATCCCAG-------------------AGCCAGAGG-CAGTTGGGTCATGTGAGGACAGAACTTGGGGAGTCCTGTTTGCTTCTCTATCTGCAAGTTGTTCCTGGTTCTTCAGGCAACTCTGAAGCCCTAGAATGGGAGGTACAGGTCAGTGATGGGAT--CTGCAGTGATAACAAAGAC-------CTTTTCTTCTTTATGCATTCTCTTTGCCCTGTGGCTAGGAT---G-CTA---------------TGCT--------CAAGCTC-TTCAGACA--AGCTCAGTCCTTGGG--------GAGTTAATTGTCTGGACCCCAAGGC-------------------------TGCCACTCATGGTTTGTTAGGGC-------------------CTGGCTTTTACAG-----ACATATCATTTAA--------------TTATTCATCAAACCCTCTCTTCCCTGTCTACTATTTGTCAGCATCAGAGCTTC--TTTCAGATGAGCT-AGGGTCTG-TTAGTA---CAGAGGACATGTAAGATGTCACCTCGGTATTTGCAAAACTC-AGACATTT s rn5.chr9 92356825 503 + 121549591 CAAAGCCTATTTATTCCATATCCCAGAGTCTGAGG--GCTTTGAAAGTCACAGG-TAGTTGCATTATCTGAGGACAGAACTTGGGGAGTCCTGTTTACTTCTCTTTCTTCAAGTTGTTCCTGGCTCCTCAGTCACCTCTGAAGCCCTAGACT-GTAGTAAAAGGTCAGTGATGGGATTCCCCTGGTGGTAACAAAGAC-------CTTTTCTTCTTTATGCATTCTCTTTGCCCTGTGGCTAGGAT---G-CTC---------------ACTTGGTTGCTGCCAGCCC-TTTAGAGC--AGCTCAGTCTTTAGG--------GAGTTAGTTGTCTGATCCCCAAGGTCCCCAAGGTCCTG-------CCTGGTACCACTCAGGGTCTGGGAGGGC-------------------CTGGCTCTTACAG-----ACATATCATTTGA--------------TTATTCCTCAAATTTTCTCTTCCCTGTCTACTGTTTGTCAGCATCAGAGCTGC--TTTCAGATGAGCA-GGGGTTTG-TTTGTA---CAGAGGACATGTAAGACGTCACCTTGGCATTTGCAAAACTCAAGACATTT i rn5.chr9 I 332 C 0 s speTri2.JH393335 4117274 506 - 10418462 CAGGCCCTCTTT-----TAACCCTGGAGCATGAGA--TTTTTGCAACTCACAGG--------GCAACTTTAGAATA-AATTTGGAAACAGACGCTTGCCGTTCTCTGTCCAAGTCATTTTCTGTTCTTTAGACATTTCTGGAGCTCCAGGTT--------AGGGTTAGCACTGGGTCT-CCCTGGGGATGCTGAGGACAAGC-TGCCTCTTTGTCTTAGAATCGTTCCTTGTCATTTGGCTAGGATCACA-CTAGG-AGAGGGT--GATCCCTGGTTTCTAGGAGGCT-TTCGGGCC--AGTCCAGTCCTGGGGGCAGAGCAGCGGTCATTGTCCAATCGCCAGAAC-------------------------ATCTTCTCATGGTCTA-TAGGACACCCCCCACCCCCCGCAATCTGGCTCTTAGAG-CCCCATACAACATTTGACTTTGGACACACTTTTATTCTTCAAAACGGCTCT--CCTCTCAACTCTCAGCGAG--TCAGGGTCCC--------AAAGCCA-AGAGACTA-TTTTT------------ATGTAAGAAGTCTCC---AAACATGCAAAATAC-TTGCAATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102298 538 + 243199373 CAAAGCCTACTTATTTGAAACACTTGAAACTGAGATTTTTTTGAAACTCACAGTGAAGTTGTGTCATTTTAGGTTA-CATTTGGAAGTGGATGCTTGCTACTGTCTCTCCAAATCATTGTTTGATCTTTGGACATTTCTAGAGCCCTAGAAT-GCAAGTTAATGTTAGCAGTGGATGC-CCTTAGGGATACTGAGGACAAGGCTTCTTCTTGTCTTTGTGAATTTTCTGTGCCCTTTGGCCAGGAG---T-CATAGT-GGGGGCTGGTTGATTGGTTTCCTGGAGCTC-GTCAGGCC--AGGCCAATCCTAGTA--------GTGGTTATTGTCCATGCAACAGAAC------AGCCTTG--------TTAAGGCCACTCCTGAAATAACCTGGC-------------------CAGGCTC-TAAAG-CCATACACAACATTCAACTTTGAACCCACACTTATTATTTAAAATTACTCTCTCCCCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTCA-AAAAATT-AGAGTGTA-TTTTTATGGTGGAGGACATTTAAGAAGTCATCCAAATATACGCAAAATTC-TAACATTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235483666 539 + 247518478 CAAAGCCTACTTATCTGAAACACTTGAAACTGAGATTTTTTTGAAACTCACAGTGAAGTTGTGTCATGTTAGGTTA-TATTTGGAAGTGGATGCTTGCTACTGTCTCTCCAAATCATTGTTTGATCTTTGTACATTTCTAGAGCCCTAGAAT-GCAAGTTAATGTTAGCAGTGGATGC-CCTTAGGGATACTGAGGACAAGCCTTCTTCTTGTCTTTGTGAATTTTCTGTGCCCTTTGGCCAAGAG---T-CATAGTAGGGGGCTGGTTGATTGGTTTCCTGGAGCTC-GTCAGGCC--AGGCCAATCCTAGTA--------GTGGTTATTGTCCATGCAACAGAAC------AGCCTTG--------TTAAGGCCACTCCTGAAATAACCTGGC-------------------CAGGCTC-TAAAG-CCATACACAACATTCAACTTTGAACCCACATTTATTATTTAAAATTACTCTCTCCCCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTAA-AAAAATT-AGAGTGTA-TTTTTATGGTGGAGGACATTTAAGAAGTCATCCAAATATACGCAAAATTC-TAACATTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435324 539 + 131632457 CAAAGCCTACTTATTTGAAACACTTGAAACTGAGATTTTTTTGAAACTCACAGTGAAGTTGTGTCATGTTAGGTTA-CATTTGGAAGTGGATGCTTGCTACTGTCTCGCCAAATCATTGTTTGATCTTTGGACATTTCTAGAGCCCTAGAAT-GCAAGTTAATGTTAGCAGTGGATGC-CCTTAGGGATACTGAGGACAAGCCTTCTTCTTGTCTTTGTGAATTTTCTGTGCCCTTTGGCCAGGAG---T-CATAGTAGGGGGCTGGTTGATTGGTTTCCTGGAGCTC-GTCAGGCC--AGGCCAATCCTAGCA--------GTGGTTATTGTCCATGCAACAGAAC------AGCCTTG--------TTAAGGCCACTCCTGAAATAACCTGGC-------------------CAGGCTC-TAAAG-CCATACACAACATTCAACTTTGAACCCACATTTATTATTTAAAATTACTCTCTCCCCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTCA-AAAAATT-AGAGTGTA-TTTTTATGGTGGAGGACATTTAAGAAGTCATCCAAATATACACAAAATTC-TAACATTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632308 536 + 6458163 CAAAGCCTACTTATTTGAAACACTTGAAACTGAGA-TTTTTTGAAACTCACAGGGAAGTTGTGTCATGTTAGGTTA-CATTTGGAAGTGGATGCTTGCTACTGTCTCTCCAAATTGTTGTTTGATCTTTGGACATTTCTAGAGCCCTAGAAT-GCAAGTTAATGTTAGCAGTGGATGC-CCTTAGGGATACTGAGGACAAGC---CTTCTTGTCTTTGTGAATTTTCTGTGCCCTTTGGCCAGGCG---T-CACAGTAGGGGGCTGGTTGATTGGTTTCCTGGAGCTC-GTCAGGCC--AGGCCAATCCTAGTA--------GTGGTTATTGTCCACACAACAGAAC------AGCCTTG--------TTAAGGCCACTCCTGAAATAACCTGAC-------------------CAGGCTT-TAAAG-CCACACACAACATTCAACTTTGAACCCACATTTATTGTTTAAAATTACTCTCTCCTCTTAAGTGTACAACAATGTCAGAAAGTCAGGTTCA-AAAAATT-AGAGTGTATTTTTTATGGTGGAGGACATTTAAGAAGTCATCCAAATATATGCAAAATTC-TAACATTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94035567 540 + 106825570 CAAAGCCTACTTAT-TGAAACACTTGAAACAGAGATTTTTTTGAAACTCACGGGGAAGTTGTGTCATGTTATTTTA-CATTTGGAAGCAGATGCTTGCTACTGTCTCTCCAAATCATTGTTTGATCTTTGGACATTTCTAGAGCCCTAGAAT-GCAAGTTAATGTTAGCAGTGGATGC-CTTTAGGGATACTGAGGACAAGCCTTCTTCTTGTCTTTGTGAATTTTCTGTGCCCTTTGATCAGGAG---T-CACAGTAGGGGGCTGGTTGATTGGTTTCCTGGAGCTCTGTCAGGCC--AGGCCAATCCTAGTA--------GTGGTTATCATCCACATAACAGAAC------AGCCTTG--------TTAAGGCCACTCCTGAAATAACCTGGC-------------------CAGGCTC-TAAAG-CCACACATAACATTCAACTTTGAACCCACATTTATTATTTAAAATAACTCTCTCCTCTTAAGTGTACAACAATGTCAGAGAGTCAGGTTCA-AAAAATTAAGACTGTA-TTTTTATGGTGGAGGACATTTAAGAAGTCATCCAAATATATGCAAAATTC-TAGCATTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146708960 524 + 158406734 TAAAACCTACTTAGTTGAAACACTTG-GCCTGAGA--TTTTTGAAACTCACAGGGAAGGTGTGTCATGTTAGGATA-TATTTGGAAGTAGATGTTTGCTACTCTCTCTCCAAATCATTGTTTGATTTCTGGACATTTCTAGAGCCCCAGAAT-GCAAGTATATGTTAGCAGTGGATGC-CCTTAGGGCTACTGAGGACAAGCCTTCTTCTTGTCTTTGTGAATTTTCTGTGCCCTTTGGCCAGGAG---T-CACCGTAGGGGGCTAGTTGATTGGTTTCCTGGAGCCA-GTCAGGCC--AGGACAATCCCAGTA--------ATGGTTATTATCCACACAACAGAAT------GGCCTCTCATG--ACTTAAGGCCACTTGTGAAGTAACCTGGC-------------------CAGGCTC-TAAAG-CCCCACACAACATTCGAGTTTGAACCCACA------------------TCTCTCCTCTCAAGTGTACAACAATGTCAGAGAGTCAGGTTCA-AAAAATT-AGAGTGTA-TTTTTATGGCAGAGGACATTTAAGAAGTCATCCAAATATATGCAAAATTC-TCATATTT i calJac3.chr6 C 0 C 0 s equCab2.chr6 17840119 536 + 84719076 CAAAGCCCTCTCATTTTATACACTTGAGCCTGAGA--TTATTGAAACTCATAGAGAAGTTGTGCCACGTTAGGATA-AATTTGGAAGCAGATGCTTGCTGCTCTCTCTCCAAATTGTTTCTTGTTCTTTAGACATTTCTGAAGCCCTGGAAT-GCAGGTAAAGTTTAGTGGGAGGTCT-TCCTGGGGATGCTGAGGACAAGGTTTCTCTTTGTTTTTGTGGACTTTCTTTGCCCTTTGGCCAGGTC---TACAACAGGGGAGGGTGAACGCCTGGTTTCCTGGAGCCC-TTCAGGCAGGAGGCCA-----------------GTGATTATCATCTAGTCAACAAAAT------GGCCCCTCATACCAGTCAGGACCACTCTTAAGGCATCCTGGC-------------------CAGGCTCTTAAAGCCCCCACACAACATTCAACTCTGAACCCAATTTTATTCTTCAAAGTTGCTCT-----CTCAAGTGTACATCAATGTCAGAGAGTCAGCTTCA-CAAAATA-AGAATCTG-TTTTTATGGCGGAGGCTATTTAAGAAGTAATCAGAATATATGTAACATTC-TAACATTT i equCab2.chr6 I 5 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=9338.000000 s mm10.chr1_GL456221_random 47077 3 + 206961 TAC s rn5.chr9 92357328 3 + 121549591 TAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117780 3 - 10418462 CAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102836 3 + 243199373 CAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484205 3 + 247518478 CAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435863 3 + 131632457 CAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632844 3 + 6458163 CAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036107 3 + 106825570 CAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146709484 3 + 158406734 CAC i calJac3.chr6 C 0 C 0 s equCab2.chr6 17840655 3 + 84719076 CAG i equCab2.chr6 C 0 C 0 s proCap1.scaffold_11117 6854 3 + 44248 CCC i proCap1.scaffold_11117 N 0 I 14 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=19211.000000 s mm10.chr1_GL456221_random 47080 10 + 206961 AAGAAAAGAG s rn5.chr9 92357331 8 + 121549591 GAGAAA--AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117783 8 - 10418462 GAGAGG--AG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102839 8 + 243199373 AAGAGA--AC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484208 8 + 247518478 AAGAGA--AC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435866 8 + 131632457 AAGAGA--AC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632847 8 + 6458163 AAGAGA--AT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036110 8 + 106825570 AAGAGA--AC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146709487 8 + 158406734 AAGAGA--AC i calJac3.chr6 C 0 C 0 s equCab2.chr6 17840658 8 + 84719076 AAGAGA--AC i equCab2.chr6 C 0 C 0 e proCap1.scaffold_11117 6857 14 + 44248 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=2818.000000 s mm10.chr1_GL456221_random 47090 1 + 206961 A s rn5.chr9 92357339 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117791 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231102847 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484216 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435874 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632855 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036118 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146709495 1 + 158406734 A i calJac3.chr6 C 0 C 0 s equCab2.chr6 17840666 1 + 84719076 A i equCab2.chr6 C 0 C 0 s proCap1.scaffold_11117 6871 1 + 44248 G i proCap1.scaffold_11117 I 14 N 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=694605.000000 s mm10.chr1_GL456221_random 47091 265 + 206961 AATGGTGTTTGAACCAATGTAAG---CCTCATATAACCCATAAATCCATCATGACACAATTCTGTATTCACTA-TTTTAAGGAATATCAAGGAACATGTAGGAACCTGCTCCCAGTGGAGAGAGTCGTGTATGACATCCTCAGCAATGTACAGAAGAAGTTTAGCCAGGATCTTCTGAAAGTGATATTCAGCAAAACACATCTGAAGGCCTAACCCGACTTAAACGAGACTCTAAAACACTTCTTCCTAAATGGTAACTACAGCTCTCA s rn5.chr9 92357340 261 + 121549591 AATGGTGCTTGAACCAATCGAAG---CCTCA-ATAACCCATACAACCATCATGACATAATCCTGTATTCAATA-TTTTAAGGAATGTCAAGAAACATGTAAGAACCTGGTTCCAGTGGACAGAGTGGTGTATGACATCCTCAGTGACATACAGAAGAAGTTTAGCCGGGATCTTCTGAAAGTGATATTCAGCAACGTGCATCTGAAGGCCTACCCTGACTTACAGGAGATTCTAAAACA---CTTCCTAAGTGGTAACTATAGCTCTCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4117792 264 - 10418462 AACGGTCTAGGCACCCACCTAAGAGTCTTCG-GTAATCCACAAATCCACAGTGACAGGATTCTCATTCCACGT-TTTCCAGCATCTTCAAGAAGCCTGTAGAAACCTGGTCCCCGTGAACGCAGTGGTGTACACCGTCCTCAGTGAGCTGGAGAGGACCTTCAGCCTGTCGCTTCTGGACGAACTGTTCAGCCGCACCAATCTGACGGCCTACCCAGACTTGGTGGAGATTTCCAGAAG---CTTCCTAAATGGTAACAAAAGCTCTCA i speTri2.JH393335 C 0 I 1481 s hg19.chr2 231102848 264 + 243199373 GATGTTCTATCTA-CAACCTAAAAGTCTTTT-GTAACCCATAAATCTCTAGCTACATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTACAGAAG---CTTCCAGAATGGTAACTATAGCTCTCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484217 264 + 247518478 GATGTTCTATCTA-CAACCTAAGAGTCTTTT-GTAACCCATAAATCTCTAGCTACATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTACAGAAG---CTTCCAAAATGGTAACTATAGCTCTCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119435875 264 + 131632457 GATGTTCTATCTA-CAATCTGAGAGTCTTTT-GTAACCCATAAATCTCTAGCTACATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACCAGATTTACAGAAG---CTTCCAGAATGGTAACTATAGCTCTCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3632856 264 + 6458163 GATGTTCTATCTA-CAACCTGAGAGTCTTTT-GTAACCCATAAATCTCTAGCTACATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACATTTGGCTGGTCACATCTGGAAGCAGTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTATAGAAG---CTTCCAAAATGGTAACTATAGCTCTCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036119 264 + 106825570 GATGTTCTATCTA-CCACCTAAGAGTCTTTT-GGAACCCATAAATCTCTAACTACATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTCCCAGTGACAAGAGTGATGTATTGTGTACTCAGTGAACTGGAGAAGACGTTTGGCTGGTCACATCTGGAAGCATTGTTCAGCAGGATTAACCTGATGGCCTATCCTGATTTAAACGAGATTTATAGAAG---CTTCCAAAATGGTAACTATAGCTCTCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146709496 264 + 158406734 GATGTTCTATCTC-CAACCTACAAGTCTTTT-ATAACCCACAAATCTCTAACTACATAATTCTCCATTTAATATTTTTAAGCATTTTCAAGAAGCTTTTAGAAACCTGGTTCCAGTGGCAAGAGTGATGTACCGTGCACTCAGTGAACTGGAGAAGACGTTTGGCTGGTCACATCTGGAAGCGTTGTTCAGCAGGGTTAACCTGATGGCCTATCCTGATTTAAACGAAATTTACAGAAG---CTTCCAAAATGGTAACTATAGTTCTCA i calJac3.chr6 C 0 C 0 s equCab2.chr6 17840667 262 + 84719076 AATGATCTATCTA-CAATCTGAG--TCTTCT-ATAACCTGTAAATCCATAGCTACCTAATTCTCCATTCAATATTTTAAAGGATTTTCGAGAAGCTTGTAGAAATCTGGTCCCGGTGGAGAGAGTGGTATATGATGTTCTCAGTGAACTGGAGAAGAAGTTTGACAAGAAAGTTCTGGATGCCCTATTCAGCAAGGTTAACCTGAAGGCCTATCCTGATTTAATTGAGATTTTAAGAAA---CTTCCAAGATGGTAACTATAGCTTTCA i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=79310.000000 s mm10.chr1_GL456221_random 47356 35 + 206961 CCTGC-TTCAGGGAAGGAAAGACAATTTCATTCTTT----- s rn5.chr9 92357601 35 + 121549591 CCTGC-TTCAGGGAATGAAAGACAATttcattcatt----- i rn5.chr9 C 0 C 0 s hg19.chr2 231103112 35 + 243199373 ACAGC-TTTGGGGGATTCAAGCCCATttcattcatt----- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484481 35 + 247518478 ACAGC-TTTGGGGGATTCAAGCCCATttcattcatt----- i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119436139 35 + 131632457 ACAGC-TTTGGGGGATTCAAGCCCATttcattcatt----- i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3633120 35 + 6458163 ACAGC-TTTGGGGGATTCAAGCCCATttcattcatt----- i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94036383 35 + 106825570 ACAGC-TTTGGGGGATTCAAGCCCATttcattcatt----- i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146709760 35 + 158406734 ACAGT-TTTGGGGGATTCAAGCCCATttcattcatt----- i calJac3.chr6 C 0 I 2 s equCab2.chr6 17840929 41 + 84719076 ACAACTTTTGGGGGATTCAAGTCCATTTCGTTTACTGATTC i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=-1082.000000 s mm10.chr1_GL456221_random 47391 4 + 206961 TTTt- s rn5.chr9 92357636 4 + 121549591 tatt- i rn5.chr9 C 0 I 6 s panTro4.chr2B 235484518 2 + 247518478 --tt- i panTro4.chr2B I 2 I 2 s gorGor3.chr2B 119436176 2 + 131632457 --tt- i gorGor3.chr2B I 2 I 2 s nomLeu2.GL397366 3633157 2 + 6458163 --tt- i nomLeu2.GL397366 I 2 I 2 s calJac3.chr6 146709797 2 + 158406734 --tt- i calJac3.chr6 I 2 I 2 s equCab2.chr6 17840970 4 + 84719076 -TTTC i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94036418 1 + 106825570 I e hg19.chr2 231103147 0 + 243199373 C e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=2662.000000 s mm10.chr1_GL456221_random 47395 8 + 206961 --tttttttt s panTro4.chr2B 235484522 6 + 247518478 --ttcatt-- i panTro4.chr2B I 2 I 3 s gorGor3.chr2B 119436180 6 + 131632457 --ttcatt-- i gorGor3.chr2B I 2 I 3 s nomLeu2.GL397366 3633161 6 + 6458163 --ttcatt-- i nomLeu2.GL397366 I 2 I 3 s calJac3.chr6 146709801 6 + 158406734 --ttcatt-- i calJac3.chr6 I 2 I 3 s equCab2.chr6 17840974 8 + 84719076 ATTCCCTT-- i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94036418 1 + 106825570 I e hg19.chr2 231103147 0 + 243199373 C e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92357640 6 + 121549591 I a score=282.000000 s mm10.chr1_GL456221_random 47403 3 + 206961 ttc s equCab2.chr6 17840982 3 + 84719076 ttc i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94036418 1 + 106825570 I e nomLeu2.GL397366 3633167 3 + 6458163 I e gorGor3.chr2B 119436186 3 + 131632457 I e panTro4.chr2B 235484528 3 + 247518478 I e hg19.chr2 231103147 0 + 243199373 C e calJac3.chr6 146709807 3 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92357640 6 + 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 47406 366 + 206961 aagacagggtttctctgtatagcgctggctgtcctggagctcactctgtagaccaggctggcctcaaactcagaaatccacctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccacgcccggctCATCCGggagagatggctcagcagttaagagcactgactgctcttctgaaggtcctaagttcaaatcccagcaaccacatggtggctcacaaccatctgtgattgaattctatgtcctcttctggtgtgtctgaagatagcaacagcaacagtgtgctcacatacataaaataaataaatctttaaaaaaattaaaaaaaAAAAAAAAAAAAAAGGCGTGCGCCACCATGC e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94036418 1 + 106825570 I e equCab2.chr6 17840985 0 + 84719076 C e nomLeu2.GL397366 3633167 3 + 6458163 I e gorGor3.chr2B 119436186 3 + 131632457 I e panTro4.chr2B 235484528 3 + 247518478 I e hg19.chr2 231103147 0 + 243199373 C e calJac3.chr6 146709807 3 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92357640 6 + 121549591 I a score=69.000000 s mm10.chr1_GL456221_random 47772 2 + 206961 CC s rn5.chr9 92357646 2 + 121549591 tc i rn5.chr9 I 6 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94036418 1 + 106825570 I e equCab2.chr6 17840985 0 + 84719076 C e nomLeu2.GL397366 3633167 3 + 6458163 I e gorGor3.chr2B 119436186 3 + 131632457 I e panTro4.chr2B 235484528 3 + 247518478 I e hg19.chr2 231103147 0 + 243199373 C e calJac3.chr6 146709807 3 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=237.000000 s mm10.chr1_GL456221_random 47774 5 + 206961 GGCTC s rn5.chr9 92357648 5 + 121549591 catcc i rn5.chr9 C 0 C 0 s hg19.chr2 231103147 5 + 243199373 gattc i hg19.chr2 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e rheMac3.chr12 94036418 1 + 106825570 I e equCab2.chr6 17840985 0 + 84719076 C e nomLeu2.GL397366 3633167 3 + 6458163 I e gorGor3.chr2B 119436186 3 + 131632457 I e panTro4.chr2B 235484528 3 + 247518478 I e calJac3.chr6 146709807 3 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=5087.000000 s mm10.chr1_GL456221_random 47779 15 + 206961 ATCCATTCATTCATT s rn5.chr9 92357653 15 + 121549591 attcattcattcatt i rn5.chr9 C 0 C 0 s hg19.chr2 231103152 12 + 243199373 attcattcactc--- i hg19.chr2 C 0 C 0 s rheMac3.chr12 94036419 15 + 106825570 attcattcattcact i rheMac3.chr12 I 1 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e equCab2.chr6 17840985 0 + 84719076 C e nomLeu2.GL397366 3633167 3 + 6458163 I e gorGor3.chr2B 119436186 3 + 131632457 I e panTro4.chr2B 235484528 3 + 247518478 I e calJac3.chr6 146709807 3 + 158406734 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=9072.000000 s mm10.chr1_GL456221_random 47794 5 + 206961 TTTTC s rn5.chr9 92357668 5 + 121549591 ttttc i rn5.chr9 C 0 C 0 s hg19.chr2 231103164 3 + 243199373 --ttc i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484531 5 + 247518478 tcttc i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119436189 5 + 131632457 tcttc i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3633170 5 + 6458163 tcttc i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94036434 4 + 106825570 -cttc i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146709810 5 + 158406734 tcttc i calJac3.chr6 I 3 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e equCab2.chr6 17840985 0 + 84719076 C e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=119222.000000 s mm10.chr1_GL456221_random 47799 52 + 206961 ATTGATAGTTGACATATAATTTAATGAGAGACTATGTCATGCCAAGCACAGG s rn5.chr9 92357673 52 + 121549591 attGATATTTGACATATAATTTACTGAAAGACTATGTCATGCCAAGCACAGG i rn5.chr9 C 0 C 0 s hg19.chr2 231103167 52 + 243199373 attcatatttgacaaatatttgactgagtgactattacatgccaagcccagg i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484536 52 + 247518478 attcatatttgacaaatgtttgactgagtgactattacatgccaagcccagg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436194 52 + 131632457 attcatatttgacaaatgtttgactgagtgactattacatgccaagcccagg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633175 51 + 6458163 gttcatatttgacaaatgtttgactgagtgactattacatgccaagcct-gg i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036438 52 + 106825570 attcatatttgacaaatgtttgactgagtgactattacatgccaagcccagg i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146709815 51 + 158406734 attcatatttgacaaatgtttgac-gagtaactattacatgccaagcccagg i calJac3.chr6 C 0 C 0 s equCab2.chr6 17840985 52 + 84719076 attaatatttgacaattattttattgaatgaccactctgtggcaggcacaga i equCab2.chr6 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=3321.000000 s mm10.chr1_GL456221_random 47851 1 + 206961 G s rn5.chr9 92357725 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231103219 1 + 243199373 g i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484588 1 + 247518478 g i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436246 1 + 131632457 g i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633226 1 + 6458163 g i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036490 1 + 106825570 g i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146709866 1 + 158406734 g i calJac3.chr6 C 0 C 0 s equCab2.chr6 17841037 1 + 84719076 g i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 40700 1 + 44403 a i pteVam1.scaffold_12135 N 0 I 1189 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=13918.000000 s mm10.chr1_GL456221_random 47852 7 + 206961 GGAATAT s rn5.chr9 92357726 6 + 121549591 AG-ATGT i rn5.chr9 C 0 C 0 s hg19.chr2 231103220 7 + 243199373 ggaatat i hg19.chr2 C 0 I 8 s panTro4.chr2B 235484589 7 + 247518478 ggaatat i panTro4.chr2B C 0 I 8 s gorGor3.chr2B 119436247 7 + 131632457 ggaatat i gorGor3.chr2B C 0 I 8 s nomLeu2.GL397366 3633227 7 + 6458163 ggaatat i nomLeu2.GL397366 C 0 I 8 s rheMac3.chr12 94036491 7 + 106825570 ggaatat i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146709867 7 + 158406734 ggagtgt i calJac3.chr6 C 0 I 1 s equCab2.chr6 17841038 7 + 84719076 agaatac i equCab2.chr6 C 0 I 8 e pteVam1.scaffold_12135 40701 1189 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e turTru2.JH490333 28994 13603 - 53618 I e papHam1.scaffold15394 26259 17356 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=5005.000000 s mm10.chr1_GL456221_random 47859 1 + 206961 A s rn5.chr9 92357732 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231103235 1 + 243199373 a i hg19.chr2 I 8 C 0 s panTro4.chr2B 235484604 1 + 247518478 a i panTro4.chr2B I 8 C 0 s gorGor3.chr2B 119436262 1 + 131632457 a i gorGor3.chr2B I 8 C 0 s nomLeu2.GL397366 3633242 1 + 6458163 a i nomLeu2.GL397366 I 8 C 0 s rheMac3.chr12 94036499 1 + 106825570 a i rheMac3.chr12 I 1 I 7 s papHam1.scaffold15394 43615 1 - 58077 a i papHam1.scaffold15394 I 17356 I 8697 s calJac3.chr6 146709875 1 + 158406734 a i calJac3.chr6 I 1 I 1 s turTru2.JH490333 42597 1 - 53618 a i turTru2.JH490333 I 13603 N 0 s equCab2.chr6 17841053 1 + 84719076 a i equCab2.chr6 I 8 C 0 e pteVam1.scaffold_12135 40701 1189 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=-128.000000 s mm10.chr1_GL456221_random 47860 1 + 206961 T s rn5.chr9 92357733 1 + 121549591 G i rn5.chr9 C 0 C 0 s equCab2.chr6 17841054 1 + 84719076 g i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 40701 1189 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036500 7 + 106825570 I e nomLeu2.GL397366 3633243 0 + 6458163 C e gorGor3.chr2B 119436263 0 + 131632457 C e panTro4.chr2B 235484605 0 + 247518478 C e hg19.chr2 231103236 0 + 243199373 C e calJac3.chr6 146709876 1 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=643856.000000 s mm10.chr1_GL456221_random 47861 299 + 206961 GAAACACATATGGCTCATGTCGTCA-GGAGCTTACACATAG------------------GCCAAGTAA-CACAGAGATAACTGCTCAGCCGGAACCTGATTTTCATGCTATGAAACACAG------------------TATGAAGG-----ATGAG---------TTTCTTTAGACAGGAGCCAGCTCTGTTTGAGGCTTGCAGACATAAGTAATGGTAAAAA--------------TGCAGAATTTGTCATTCAGCAGAGTAACTACTCTACTACTTCAGTTTTCTTCTT----TGAAGAGTAGAGAAATCACAAGGGGAGCCCAGGTTGGGCCCAGACACTCGAGAGA-G-AAGCATGTGTCAAC----CGAG----- s rn5.chr9 92357734 288 + 121549591 GAAAAACATACGGCCCATGTAGTCA-GGAGCTTACACCTAG------------------GCCAAGTAA-CACATAGACAACTGCTCA--CAGGACCTGATTTTCATGCTATTAAACACAG------------------TATGAAGG-----ATGAG---------TTTCCTTAGACAGGAGCCAGCTCTCTTTGATGCTTGCAGACATTTGCAATTGTAAACA--------------TGCAAAATTTATCACTCAGCAGAG---------TCCTACTTCAGTTTCCTTCTT----TGAAGAGTAGAGAAATCACAAGGGGAGCCCAGGCTAGGCCCAGACACTTGAGAGG-G-TAGCCCGTGTCTGC----CTAG----- i rn5.chr9 C 0 C 0 s hg19.chr2 231103236 356 + 243199373 aaaacacacatgtcccatgtccttatggagtttacatacagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAGGGTTGAAGTCTCTATTTTTTTGAAGGAATACATGAGTGATG-TCTTTTCATGGGAAAGGAGGAAGCCTTCTCTGATATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATCCAGTGCAG---------TCCTGTGTCAACTTGTTTCTCCAAACAAAGACTGGAGAAGTCACGAAGAGAGCCTAGCACATACTGGTACACTGAGGAGGAG-CTGCATGTGAAAGC------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235484605 356 + 247518478 aaaacacacatgtcccatgtccttatggagtttacatatagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATTCTGTAAAACATAGGGTTGAAGTCTCCATTTTTTTGAAGGAATACATGAGTGATG-TCTTTTCATGGGAAAGGAGGAAGCCTTCTCTGATATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATCCAGTGTAG---------TCCTTTGTCAACTTGTTTCTCCAAACAAAGACTGGAGAAGTCACAAAGAGAGCCTAGCACATACTGGTACACTGAGGAGGAG-CTGCATGTGAAAGC------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119436263 356 + 131632457 aaaacacacatgtcccatgtccttatggagtttacttatagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAGGGTTGAAGTCTCCATTTTTTTGAAGGAATACATGAGTGATG-TCTTTTCATGGGAAAGGAGGAAGCCTTCTCTGATATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATCCAGTGCAG---------TCCTGTGTCAACTTGTTTCTCCAAACAAAGACTGGAGAAGTCACGAACAGAGCCTAGCACATACTGGTACACTGAGGAGGAG-CTGCATGTGAAAGC------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3633243 356 + 6458163 aaaacacacatgtcccatgtccttatggagtttacatatagtgggagtgacagacgttaaccaagtaaTCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAGGGTTGAAGTCTCCATTTTTTTGAAGGAAGACATGAGTGATG-CCTTTTCATAGGAAAGGAGGAAGCCTTCTCTGATATTTGCAGATATGTTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATTCAGTGCAG---------TCCTGTGTCAACTTGTTTCTCCAAACGAAGACTCGAGAAGTCACGAAGAGAGCCTAGCACATACTGGTACACTGAGGAGGAG-CTGCATGTGAAAGC------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94036507 356 + 106825570 aaaacacacatgttccgtgtccttatggagtttacatatagtgggagtgatagatgttaaccaagtaatCCTGCAAATGGTTGCTCAGCCAGGACTTGATTTTGATGCTGTAAAACATAGGGTTGAAGTCTCCATTTTTTTCAAGGAAGACATGAGTGAAG-CCTTTTCATAGGAAAGGAGGAAACCTTCTCTGATATTTGCAGATACATTCAAAGATAAAACAATTTTCTTTGTATTAGAAAATTTATCATTCAGTGCAG---------TCCTGTGTCAACTCGTTTCTCCAAACGAAGACTGGAGAAGTCACGAAGAGAGCCCAGTACATACTGGTACACTGAGGAGGAG-CTGCATATGAAAAC------------- i rheMac3.chr12 I 7 C 0 s calJac3.chr6 146709877 359 + 158406734 gaaaaacacacgtcccatgtccttatggagtttatttataatgggaatgacagacgttaaccgagtaaTCCTGCAAATGGCTGCTCAGCCGGGACTTGACTTTGATGCTGTCAAACACAGGATTGAAGTCTCCATTGTTTTGAAGGAAGACATGAGCGATG-TCTTTTCACAGGAAAGGAGGGAGCCCTCTTTGATACTTGCAGACATGTTCAAAGATGAAAAGATTTTCTTTGTATTAGAAAATGTATCATTCAGTGCAG---------TCCTGTGTCAACTTGTTTCTCCAAACTAAGAGCAGAGAAGTCACG-GGGGAGCCCAGCACATAGTGGTACACTGAGGAGGAG-AGGCATGGGAAAGCCCAG--------- i calJac3.chr6 I 1 I 2539 s equCab2.chr6 17841055 353 + 84719076 aaaacacgcataacctgtgtctttgtggagcttacacatagccgggg-gacaaacgttaagccagtaaTCCCACAAATGATTGCTCAGCCAGGACCGGAATTTGGTTCTGCAAAACATAGGATT------TCCATAT-TTTGGGGAAAAGTATGAACTATGCCCCTTTTGCAGGAAAGGAGGAAGCCCACTCTGATACTTGCAGACATGTTCAAAAATGAAAAACTTTTCTTTGTATTAGAAAA--CGTCATTCAGTGCAG---------TCCTGTGCCAACTTACTTTTCCAAACAAAGAATGGAGAAGTCACAAGAAAAGCTGAGCACATACTCATGCAATGGGGAGAGGACAGCATGTGAAAGC--------TACAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 40701 1189 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=14873.000000 s mm10.chr1_GL456221_random 48160 14 + 206961 AGTGTGAAAACAAA- s rn5.chr9 92358022 14 + 121549591 AGTGGGAGAACAGG- i rn5.chr9 C 0 C 0 s hg19.chr2 231103592 12 + 243199373 --TATGAAGACAGA- i hg19.chr2 C 0 I 14 s panTro4.chr2B 235484961 12 + 247518478 --TATGAAGACAGA- i panTro4.chr2B C 0 I 14 s gorGor3.chr2B 119436619 12 + 131632457 --TATGAAGACAGA- i gorGor3.chr2B C 0 I 14 s nomLeu2.GL397366 3633599 12 + 6458163 --TATGAAGACAGA- i nomLeu2.GL397366 C 0 I 2436 s rheMac3.chr12 94036863 12 + 106825570 --TCTGAAGACAGA- i rheMac3.chr12 C 0 I 14 s equCab2.chr6 17841408 15 + 84719076 AGTGTGAAAGGAACG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 40701 1189 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=27894.000000 s mm10.chr1_GL456221_random 48174 25 + 206961 GTGGACTTTTAGAACCAAGGTGCTG s rn5.chr9 92358036 25 + 121549591 GTGGGCTTTAAGAACCATGGTGTTG i rn5.chr9 C 0 C 0 s hg19.chr2 231103618 25 + 243199373 GGGGCCTTTCCGAACCATGTGGTTG i hg19.chr2 I 14 I 2409 s panTro4.chr2B 235484987 25 + 247518478 GGGGCCTTTCCGAACCATGTGGTTG i panTro4.chr2B I 14 I 2407 s gorGor3.chr2B 119436645 25 + 131632457 GGGGCCTTTCCGAACCACGTGGTTG i gorGor3.chr2B I 14 I 2407 s rheMac3.chr12 94036889 25 + 106825570 GGGGCCTTTCAGAACCATGTGGTTG i rheMac3.chr12 I 14 I 2393 s equCab2.chr6 17841423 25 + 84719076 GTGGAACTGCAGAATGATGTGGCTG i equCab2.chr6 C 0 I 770 e pteVam1.scaffold_12135 40701 1189 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=-42.000000 s mm10.chr1_GL456221_random 48199 14 + 206961 GCATGTTGTCGAAA s rn5.chr9 92358061 11 + 121549591 GCACATTGC---AT i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 40701 1189 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17841448 770 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212389544 18604 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=15864.000000 s mm10.chr1_GL456221_random 48213 72 + 206961 GAACATAAAATCAGCAGGTCTCAGGTA-GAGAACAGCCTCTGTTGTTCCCACTGGCTCCCTGTAGCTTCAGCT s rn5.chr9 92358072 72 + 121549591 GAACATGAAGTCAGCAGGTCCTGGGTA-GAGAACAGCCTTTGCTGTTCCCACTGGTTCCCTGTAGCTTCAGCT i rn5.chr9 C 0 C 0 s felCat5.chrC1 212408148 73 + 221441202 GGACAAGGAGTCAACATGTCCTGGGGATGGTAGAAGCATCTGTTGTTCCAATAAAACCTTTCTACCTTCACCC i felCat5.chrC1 I 18604 C 0 s equCab2.chr6 17842218 68 + 84719076 GGACATGAAGTCAACGTCTTC-----ATGAGAAAAACATCTCTCATCCCCATAGATTCTCTCTACCTTCACCC i equCab2.chr6 I 770 C 0 e pteVam1.scaffold_12135 40701 1189 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=-573.000000 s mm10.chr1_GL456221_random 48285 5 + 206961 -TTCTG s rn5.chr9 92358144 5 + 121549591 -TTTCA i rn5.chr9 C 0 C 0 s pteVam1.scaffold_12135 41890 5 + 44403 CTCCC- i pteVam1.scaffold_12135 I 1189 I 55 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842286 0 + 84719076 C e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408221 0 + 221441202 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=-201.000000 s mm10.chr1_GL456221_random 48290 45 + 206961 GCTCCCCTA----------CCTTTAGAGGACTCTCCCTTGCAGAAGGCACAGTCC s rn5.chr9 92358149 29 + 121549591 GCACCCCTA----------TCTCTAGAGGACTCTCCCTT---------------- i rn5.chr9 C 0 C 0 s felCat5.chrC1 212408221 53 + 221441202 -CCACCCTACTGCCCTGACCCTGCAGTGGGTATTGCCTC-CAGGAGGTGTGCTCT i felCat5.chrC1 C 0 I 1 s equCab2.chr6 17842286 50 + 84719076 -CTTCCCTACTG-TTGGATCCCTCAGTGGGTCTTGCCCC-CAG--GAGGTGTGCC i equCab2.chr6 C 0 I 3 e pteVam1.scaffold_12135 41895 55 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=450.000000 s mm10.chr1_GL456221_random 48335 4 + 206961 ATCA s felCat5.chrC1 212408275 4 + 221441202 GACA i felCat5.chrC1 I 1 C 0 s equCab2.chr6 17842339 4 + 84719076 ATCA i equCab2.chr6 I 3 C 0 s pteVam1.scaffold_12135 41950 1 + 44403 ---A i pteVam1.scaffold_12135 I 55 I 400 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92358178 0 + 121549591 C a score=26053.000000 s mm10.chr1_GL456221_random 48339 331 + 206961 ------GTTCTGGTGTAGACTTTTGCTGCAGAACTTGGGTGTGGTTC--------------------CTGTTCC------TATTGCTT----GGGCATTTTGAAATGCAGCTCTGAGG-------GCCAAGAGCTGGGGTTTCACTCCTCACTTG---CCAC-CTGAGGGTCACTGG--CAGCCAAGT----------------------------------CACTTCCTGT--GTTGCCAGCAGGATGCACA----TTTTCAGTT--TCTCCTCACTCTTCCTGCCTG-GGGAAGC-----TTCCTCTTCAGGGCTGTGCTTCTCTGTAACCAGAATAACTT---------CTCTGACTCAGTTCAAGCAGA---------------------------------------------GTCTCTCTAT--TTCTCTCTCCATCCCTCTATTTCCTCTTCTTT------CTTTCATCCTTGATTTATAGTA s rn5.chr9 92358178 347 + 121549591 -------------------------CTGCAGGGCCTGGATGTGGCT---------------------CTGTTCC------TATTGCTTGGTCGGTCGTCTTGAAATGCAGCTCTGAGG-------GTCAAGAGCTGGTGTTTCACTCCTCCCTTA---CCAC-CCGA-GGTCACTGA--CAGCCAAGC----------------------------------CACTTCCTGT--GTTGTTTGCAGAAAGCAGC----TTTCCAGTT--TCTCCTCACTCATCCT-----------GC-----TTCCTCTTCAGGGCTG--------TGTAACCAGAACAACTTCCCTGACTCCCCTGACTCAGTTCAAGAAAGTCCcttcctctctttctttctttctttctttctttctttctttctttctttcttt--ctttctttctatccctctatt---tcttcttt------ctCGTATCCTTGAAAGACAGTA i rn5.chr9 C 0 C 0 s felCat5.chrC1 212408279 415 + 221441202 GCTGTCTTTCTTGGCCAGCATCTTTCTCTATTTCTTGGACTTTTTCCCTCATGTTTTGTCAGTCTTCCTTTTCCATCTGTCTTTGCTG----AGGTACCTTGAAATGCAGCTGTGAAGCGGGGGTGCCCTGAGCTGGTTTTCTGCA--TGTCGTGTGATCACTTTCTGGGTCACTGGTACAGCTGTGATATTCACTTTCTGTTGTGCCTTTCAAACAATATGCACTTCTTGTTCGTGCCTTACAGAGTGTCTTGTTGTTACCTGTATCTCTCCCCACCCATCCCACCCCAGGAAAATGCTAGCTCCTCTTCACTGTTGTGTTTCTTTGTAACCAGCTCATCTT---------CCTTCCC-----TGATCTAAG---------------------------ATCCCCTTCCTCCCTCCCTTCTTCCCTTCCctttccttcatttactctttctttctttcttt---------------------------- i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17842343 408 + 84719076 CCTATCCTTCTTGCCTGGCATCTTTCTATATTTCTTGGGTGTTTTTCCTCATGTCTTAGGAGATTTGCTTTTCCATCTATGTTTGCTG----AGTCACTTTGGAATGTAGCTCTCAAGCTGGGGTGCCCTGGGCTGCTTTCCTGCACTTTTCTTGTTACCAC-TTCTGGGTCACTGGTACAACTGTGAGATT------------------------------CACTTCCTGTTTGTGCCTTTCAGAGTGTCTT----TTCTTTGTTTCTCTCACCACCCA-CTCACCGC-GGGAAGCATTTGTTCCTCTTTAATGTC---TATCTCTGTAACCAGATCATCTT---------CCCTGACACAATAGACCAAAG---------------------------ATCCCCttccttttttctttttttcttt--ctttctttctctctctctttcttctttttctttTAAAATCTCCATGCTTAAAAGATGTTG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 41951 400 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=-1803.000000 s mm10.chr1_GL456221_random 48670 64 + 206961 G--CTTTCCCCCTTCCCTCTCT-AT-------Cccccttccct-------ccccttccctc---------tccctccctcccctcttcct s rn5.chr9 92358525 57 + 121549591 G--CTTTTCCCATTCCT-------T-------TACCTTCTCCT-------TGccttccctc----------ccctccctcccctcctcct i rn5.chr9 C 0 C 0 s felCat5.chrC1 212408694 52 + 221441202 ---ctttctttctttct-------t-------tctttctttct-------ttctctttctc---------tctctctgtctcttt----- i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17842751 83 + 84719076 GGGCTTTCATTTTTTCT-------TATGAAGGTCTATTTCTCTATAAACATTGCCTTTCTCCTGAAGAAATCCCTCTGCTTCTTCCCTAT i equCab2.chr6 C 0 I 2 s chrPic1.JH584609 1068526 71 + 7941789 --gcttccttcctcttctctctgat-------acgtgccctgt-------ctgcctccctc---tGCCGATCCTTCCCATCCAACCTCCG i chrPic1.JH584609 N 0 C 0 e pteVam1.scaffold_12135 41951 400 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=-847.000000 s mm10.chr1_GL456221_random 48734 4 + 206961 --cctt s equCab2.chr6 17842836 4 + 84719076 --CTGC i equCab2.chr6 I 2 I 14174 s chrPic1.JH584609 1068597 4 + 7941789 GGCC-- i chrPic1.JH584609 C 0 C 0 e pteVam1.scaffold_12135 41951 400 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408746 0 + 221441202 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92358582 0 + 121549591 C a score=-1069.000000 s mm10.chr1_GL456221_random 48738 4 + 206961 tttc-- s felCat5.chrC1 212408746 4 + 221441202 attt-- i felCat5.chrC1 C 0 I 2 s chrPic1.JH584609 1068601 4 + 7941789 --TGGC i chrPic1.JH584609 C 0 C 0 e pteVam1.scaffold_12135 41951 400 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92358582 0 + 121549591 C a score=-984.000000 s mm10.chr1_GL456221_random 48742 2 + 206961 at- s pteVam1.scaffold_12135 42351 2 + 44403 AA- i pteVam1.scaffold_12135 I 400 I 250 s chrPic1.JH584609 1068605 2 + 7941789 -TT i chrPic1.JH584609 C 0 C 0 e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408750 2 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92358582 0 + 121549591 C a score=347.000000 s mm10.chr1_GL456221_random 48744 65 + 206961 -ctctt------ccctccctcct----tctcttttctctccttttcccttcctccttctctttcct------cttcgtccct s felCat5.chrC1 212408752 70 + 221441202 -ctctt-------tctctctctc----tttcttgtctcatttcttTGCTTTGTTGTTTCTTTTCTTTAAAACCTCCATCCTT i felCat5.chrC1 I 2 I 16374 s chrPic1.JH584609 1068607 75 + 7941789 CCCCGTgtgccaccccctcccctggtgcCACTCCTATCTTTTCCTCCCTGGGTCACTGGGTGCCAT------CCCCACCCT- i chrPic1.JH584609 C 0 C 0 e pteVam1.scaffold_12135 42353 250 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92358582 0 + 121549591 C a score=4278.000000 s mm10.chr1_GL456221_random 48809 277 + 206961 cttttccctctctccctcctccttccctccc---accttcccctctcctttcctcccttccctttccttcttccctctcccctccttccctttcttctctctccctccctccctccccttccttccctctctcttccttcttcctccctcccccctccctccct------ctccttcttccccttcctctcccctcactccctccctccttctcccttccctccctccctccttctcccctccctcccttcttctcccct--------ccctccctccttctcccctccctccc s chrPic1.JH584609 1068682 294 + 7941789 CTCCTTCCTGGGTACCTCACCCTGCAACACCTAGGCTGTCCTCCCCACGTGCCACACTAtcctctcctctctgggtgccatcctcctccctgtgtgtcacccccatcctctcctccctGAGTGCCATCCTCCTTGCCGTGTGTCAcccccatcctctcctccctgggtgccatcctcctccccgtgtgtcacccccatcctttcctcccGGGTGCCATCCTGTGTGccacccacctccatctcctccccctttcctccctgtgtgtcaccttccccccatctctctctcctctc i chrPic1.JH584609 C 0 C 0 e pteVam1.scaffold_12135 42353 250 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92358582 0 + 121549591 C a score=6769.000000 s mm10.chr1_GL456221_random 49086 73 + 206961 tccctccctccctccctcccttcctccctcccGTCTCT-----CTAAGCCTTCT-----TTTCCCCTTCGGAAGCCCCCTGCC s rn5.chr9 92358582 73 + 121549591 tccctcgttccctccctcccttcttcACTGCTATCTCT-----CTAAGCCTTCC-----TTTTCCCTACAGAAGCCCCCTGCC i rn5.chr9 C 0 C 0 s chrPic1.JH584609 1068976 83 + 7941789 cccccccccatctgccctcTCTCACCATTCCGTTGTCTACAGCCTAAGCCCCCAAAATGCCACCACTGTGGCAGTCTCCTCCC i chrPic1.JH584609 C 0 I 87 e pteVam1.scaffold_12135 42353 250 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=1701.000000 s mm10.chr1_GL456221_random 49159 26 + 206961 TTTCCTCTCATAGCTGTGTCACTTAT s rn5.chr9 92358655 26 + 121549591 TTTCCAATCATAGCGGTGTCACTTGT i rn5.chr9 C 0 I 177 e chrPic1.JH584609 1069059 87 + 7941789 I e pteVam1.scaffold_12135 42353 250 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 49185 28 + 206961 AAACATCTGCCTTTACTAATTGGCTTTC e chrPic1.JH584609 1069059 87 + 7941789 I e pteVam1.scaffold_12135 42353 250 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92358681 177 + 121549591 I a score=126.000000 s mm10.chr1_GL456221_random 49213 5 + 206961 ACATG s chrPic1.JH584609 1069146 5 + 7941789 ACGTC i chrPic1.JH584609 I 87 C 0 e pteVam1.scaffold_12135 42353 250 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I e rn5.chr9 92358681 177 + 121549591 I a score=2770.000000 s mm10.chr1_GL456221_random 49218 69 + 206961 CCTCTGA----------------TCATTTTGAAGAGCTA------------TAAACCATGATATAAGCATTT----CCACTG-------------------CCTGTCTGTCTCCAACCTT s rn5.chr9 92358858 65 + 121549591 CCCCAAA----------------TCATGTTGAAGAGATA------------TAAACCATGATATAAGCGTTC----CCACTG-----------------------TCTGTCTCTAACATT i rn5.chr9 I 177 C 0 s chrPic1.JH584609 1069151 120 + 7941789 CCCCTGAAGCCCGGGCCAGCTTTCTATTTTGTCAAGGTAAGACACTCCGTTTAAAAGTTCAGCTAAGCTTTCTGTTCCACAAACAGCCTTCCCCAGAGTTTCCTGCCTGCCTCCACCCTT i chrPic1.JH584609 C 0 C 0 e pteVam1.scaffold_12135 42353 250 + 44403 I e myoLuc2.GL429770 26004177 19404 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=1592.000000 s mm10.chr1_GL456221_random 49287 9 + 206961 CCCAGGTAC s rn5.chr9 92358923 9 + 121549591 TCCAGGTAC i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26023581 9 + 30916457 GAGAGGTGC i myoLuc2.GL429770 I 19404 I 9 s pteVam1.scaffold_12135 42603 9 + 44403 GAGAGGTGC i pteVam1.scaffold_12135 I 250 T 29661 s chrPic1.JH584609 1069271 9 + 7941789 CCCCAGAGC i chrPic1.JH584609 C 0 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=3031.000000 s mm10.chr1_GL456221_random 49296 13 + 206961 CAGAAGGGTTAGT s rn5.chr9 92358932 13 + 121549591 CAGAAGGGTTAGA i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26023599 13 + 30916457 TAGAACAGCTATA i myoLuc2.GL429770 I 9 I 132 s chrPic1.JH584609 1069280 13 + 7941789 CAGAGTGGTTGGT i chrPic1.JH584609 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=273.000000 s mm10.chr1_GL456221_random 49309 1 + 206961 A s rn5.chr9 92358945 1 + 121549591 A i rn5.chr9 C 0 C 0 s chrPic1.JH584609 1069293 1 + 7941789 A i chrPic1.JH584609 C 0 I 5392 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023612 132 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=3843.000000 s mm10.chr1_GL456221_random 49310 56 + 206961 GGCTGCACAGAAACACTAGAGTCTGGTGTGCACCTGGATATGTAACTGAGATGCAG s rn5.chr9 92358946 55 + 121549591 GGCTGCACAGAGACACCAGAATCCAGTGTGCACCTG-ATGTGTAACTGACATGCAG i rn5.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023612 132 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=29.000000 s mm10.chr1_GL456221_random 49366 1 + 206961 T s rn5.chr9 92359001 1 + 121549591 T i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26023744 1 + 30916457 C i myoLuc2.GL429770 I 132 I 14 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=688.000000 s mm10.chr1_GL456221_random 49367 12 + 206961 TCGGCTTACAAC s rn5.chr9 92359002 12 + 121549591 TCGGCACACAGC i rn5.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023745 14 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=-829.000000 s mm10.chr1_GL456221_random 49379 1 + 206961 -T s rn5.chr9 92359014 1 + 121549591 -T i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26023759 1 + 30916457 A- i myoLuc2.GL429770 I 14 I 17037 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=14912.000000 s mm10.chr1_GL456221_random 49380 213 + 206961 GAAATCCCTAATAGCTTTCTTTCCCTTCTCCCTGTTCATGTCTACTTCATGTTACCTGGTCCTCAGAGAAACAGCAGCCAGGAGCTGAGGTTCAGCACCCACTCAAGCCTTGAGAAAGCCACTTATACCTTCACAAAATCTTGATTTTTACATTGAATGGTTATTCAAAAAGTTTCTGCAAATCATGTCATTTATCTCCACAAGCTTGCCAAT s rn5.chr9 92359015 208 + 121549591 GAAATCCCTAATAGCCTTCTC-CTCTTCCTCCTGTTCAAGTCTACTT---GTTACCTGTTCCCCAGAGAAACAGCAGCCAATAGCTGAGGTTCCGCACCCAATCAAGCCTTGAGGAGGCCAGTTATACCTCCCCAAAATCTTGGTTTT-ACATCGAGTGGTTATTCAAAAAGTTTCTGCAAATCATGCCATTTATCTCCACAAGCTTGCAAAT i rn5.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e equCab2.chr6 17842840 14174 + 84719076 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=1964.000000 s mm10.chr1_GL456221_random 49593 28 + 206961 TTAGAAAGACAAACTC--TGTTGTTCCACA s rn5.chr9 92359223 30 + 121549591 TTAGAAGGACAAACTCAGTGTCATCACACC i rn5.chr9 C 0 C 0 s equCab2.chr6 17857014 25 + 84719076 TCAGAGAGACATA-----CGATCTTTCACA i equCab2.chr6 I 14174 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4118056 1481 - 10418462 I e rheMac3.chr12 94036914 2393 + 106825570 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=4176.000000 s mm10.chr1_GL456221_random 49621 27 + 206961 GTGCTTTATGCCGTAGAGG-AAGAGCAC s rn5.chr9 92359253 27 + 121549591 TTGCTTTATGCCATAGAAG-AAGAGCAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119537 28 - 10418462 GTTCCTCGTGGCGTGGAAGCAATAGCAT i speTri2.JH393335 I 1481 C 0 s equCab2.chr6 17857039 18 + 84719076 ----------GCATAGAAGCAATAGTGT i equCab2.chr6 C 0 I 1 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94036914 2393 + 106825570 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 91458 15683 + 176633 I a score=10508.000000 s mm10.chr1_GL456221_random 49648 106 + 206961 TGGGGACCAAA-GATGAG-AAGAAAGTAAT--AAGGGTGAGCAGAAAGAGA-----CAGAGCAAGGCTCTGGGTGAGTGGGGGTGAGCATCTCAGATGAG---------------GTGAAGTAACTCACC s rn5.chr9 92359280 108 + 121549591 CAGGGACCAAA-GATGAG-AAGAAAGTAGC--AGGGGTGAACAGAAAGAAAAC--AGACAGCAAGGCTCTGGGTGGGTGGGG-TGAGCATCACAGAGGAG---------------GTGGAGTAACTCACC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119565 103 - 10418462 GTGGCAGGAAGTGAGGAG-AAGGAAGGCAC--AGGAACAAGAGCAAGGGAAACGGGGAGAGTGAGGCTCTGGGGGACCTTGGGTGGGGCCCT------------------------TGGAGAAGCTCACC i speTri2.JH393335 C 0 C 0 s micMur1.scaffold_3075 107141 112 + 176633 TAGGCAACAGA-AGTAGG-GAAAAGGT-------GGATAAGATGGAAAGAG----GCAGAATAGGGTTCACTTGGATTTCAGGTGTGGTCCTTGGAGCAAA-----CATTTTTCCAAAGAGTAGCTCACC i micMur1.scaffold_3075 I 15683 I 628 s equCab2.chr6 17857058 129 + 84719076 TGGGGACAGAA-AAGGAGAAAGGATGTGACTGAGGAAGAACAAGAAGGAAAAGAGGCAGAGCCTGGCTCTGGTGAATCTTAGGTGAAGTCCTTGGAGCAACTGTATCTTTTTCCCAAGGAGAAGCTCACC i equCab2.chr6 I 1 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94036914 2393 + 106825570 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I a score=4460.000000 s mm10.chr1_GL456221_random 49754 27 + 206961 TATGTTCTGGGTGCTAGAACCCAGAGA s rn5.chr9 92359388 27 + 121549591 GGCGTGCTGAGCACCAGAGCCCAGAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119668 27 - 10418462 TGTGCACTGAACACCAGAGTCGGCACC i speTri2.JH393335 C 0 C 0 s equCab2.chr6 17857187 27 + 84719076 CAAGTGCTGAACACCAGAACTCAGCAT i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94036914 2393 + 106825570 I e nomLeu2.GL397366 3633611 2436 + 6458163 I e gorGor3.chr2B 119436670 2407 + 131632457 I e panTro4.chr2B 235485012 2407 + 247518478 I e hg19.chr2 231103643 2409 + 243199373 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=8900.000000 s mm10.chr1_GL456221_random 49781 9 + 206961 GAGTGCTTG s rn5.chr9 92359415 9 + 121549591 GAGTGCTTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119695 8 - 10418462 GAG-GCCCG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231106052 9 + 243199373 GAGCACACT i hg19.chr2 I 2409 C 0 s panTro4.chr2B 235487419 9 + 247518478 GAGCACACT i panTro4.chr2B I 2407 C 0 s gorGor3.chr2B 119439077 9 + 131632457 GAGCACACT i gorGor3.chr2B I 2407 C 0 s nomLeu2.GL397366 3636047 9 + 6458163 GAGCACACT i nomLeu2.GL397366 I 2436 C 0 s equCab2.chr6 17857214 9 + 84719076 GAGCACCCT i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94036914 2393 + 106825570 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=5900.000000 s mm10.chr1_GL456221_random 49790 2 + 206961 GA s rn5.chr9 92359424 2 + 121549591 GA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119703 2 - 10418462 GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231106061 2 + 243199373 GA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235487428 2 + 247518478 GA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119439086 2 + 131632457 GA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3636056 2 + 6458163 GA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94039307 2 + 106825570 GA i rheMac3.chr12 I 2393 C 0 s equCab2.chr6 17857223 2 + 84719076 GA i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e calJac3.chr6 146710236 2539 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=297116.000000 s mm10.chr1_GL456221_random 49792 148 + 206961 AGTCTCTGCTTC-ATAAC--TGTCTGA-TTTGGTCATTGTCTTGC--CTCTCCTCAGTTTCTGACAGTCACAGGACTCATCAGAGGATAAATGGAAGAAATGTTGAGGAGAGGCCCAAACTGCCATCAGTTGTTAGGGAAGGTGATTATGTTTT s rn5.chr9 92359426 148 + 121549591 GGTCTCTGCCCT-GTCAC--TGTCTGA-TTTGGTCATTGTCTTAT--TTCTCCTCAGTTTCTGAAAATCACAGGACTGTACAAAGGATAAATGGAAGAGATGTTGAAGAGAGGCCCAGACTGCCAGCTGTCGTTAGGGAAGGTGATTATGTTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119705 146 - 10418462 CTCCTCCCTCCT-CTCTG--GGTCTGG--TTAGTCATTTCCCTGT--TTTTCTTCAGTTTTCCGTGAGTGCCAGGCTCTCTGGAGTTGGAGTGGAGGCGAGGCTGAAATCACAGACAGACAGCATCCAGGTGTCGGGGCAGGTAATTATG-ATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231106063 152 + 243199373 GGTCTCTCCTCTGGTCAC--TGTCTGAGTTTGGTAATTTTCACATTGTTTTCCTCAGTATGCTATGAACACTCACCTCTCCAAATGAATAATGTAAACGATTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i hg19.chr2 C 0 I 4522 s panTro4.chr2B 235487430 152 + 247518478 GGTCTCTCCTCTGGTCAC--TGTCTGAGTTTGGTAATTTTCACATTGTTTTCCTCAGTATGCTATGAACACTCACCTCTCCAAATGAATAATGTAAACGATTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i panTro4.chr2B C 0 I 4466 s gorGor3.chr2B 119439088 152 + 131632457 GGTCTCTCCTCTGGTCAC--TGTCTGAGTTTGGTAATTTTCACATTGTTTTCCTCAGTATGCTATGAACACTCACCTCTCCAAATGAATAATGTAAATGATTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i gorGor3.chr2B C 0 I 4482 s nomLeu2.GL397366 3636058 152 + 6458163 GGTCTCTCCTCTGGTCAC--TGTCTGAGTTTGGTGATTTTCACATTGTTTTCCTCAGTATGCCATGAACACTCACCTCTCCAAATGAATAATGTAAGCGAGTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i nomLeu2.GL397366 C 0 I 4444 s rheMac3.chr12 94039309 152 + 106825570 GGTCTCTCCTCTGGTTGC--TGTCTGAGTTTGGTAATTTTCACATTGTTTTCCTCAGTATGCTATGAACACCCACCTCTCCAAATGAATAATGCAAACGAGTTAGAAGACAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i rheMac3.chr12 C 0 I 4506 s calJac3.chr6 146712775 152 + 158406734 AGTCTCTCCTCTGGTCAC--TGTCGGAGTTTGGTAATTTTTACATTGTTTTCTTCAGCATGCTATGAACACCCACCTCGCCAAGTGAACAATGTAAGCGGGTTAGAAGATAGACCCAGATTACTACTGTGTGATAAACAAGGTGACTATCATTT i calJac3.chr6 I 2539 I 2428 s equCab2.chr6 17857225 149 + 84719076 GGTCTGTTTCCTCACCACCATGTCTGG--TTGGTCATTTCCATGT--TTCTCTTTAGTTTACTGGGAGCACAAAGCTCTCCAAAGCACTAATGGAAGTGATGCTGAAGAGATACCCAAACTGCTACCAGGTGATGGGGAAGGTAATTATGATT- i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=2365.000000 s mm10.chr1_GL456221_random 49940 39 + 206961 TAGAACACAAAATAACTCACTGATACAATTTTCC----------------TGCCT s rn5.chr9 92359574 38 + 121549591 TAGAACACTAATTAGCTCGG-GATACTATTTTCC----------------TGCCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119851 55 - 10418462 TAAATCACCGACTAACTCACCGATGTGTTTGTCTATCTGTATGAAAGGGACATCT i speTri2.JH393335 C 0 C 0 s equCab2.chr6 17857374 39 + 84719076 TAAATGATGAGTTACGTCATTAAATTTGTTTGCC----------------TGTCT i equCab2.chr6 C 0 I 833 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94039461 4506 + 106825570 I e nomLeu2.GL397366 3636210 4444 + 6458163 I e gorGor3.chr2B 119439240 4482 + 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4522 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=2946.000000 s mm10.chr1_GL456221_random 49979 42 + 206961 TAATCCTT-CTCTAATGACCATTTCTAacacacacacacacac s rn5.chr9 92359612 43 + 121549591 TAATCTTTAGAGAAATGACCATTCCCAacacacacacacacac i rn5.chr9 C 0 C 0 s speTri2.JH393335 4119906 36 - 10418462 CCATCCTC-------CCCCCATCTCTCCCTCGCACAAACCCAC i speTri2.JH393335 C 0 I 1300 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94039461 4506 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e nomLeu2.GL397366 3636210 4444 + 6458163 I e gorGor3.chr2B 119439240 4482 + 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4522 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=2155.000000 s mm10.chr1_GL456221_random 50021 46 + 206961 acacacacacacacacacacacacacGTGCGCGAAA----------------------GCATATAGCA s rn5.chr9 92359655 68 + 121549591 acacacacacacacacacacacacacacacacacaaacacaGAGAGAGAGAGAGAGAGGCATGTAGcc i rn5.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4119942 1300 - 10418462 I e rheMac3.chr12 94039461 4506 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e nomLeu2.GL397366 3636210 4444 + 6458163 I e gorGor3.chr2B 119439240 4482 + 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4522 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=9436.000000 s mm10.chr1_GL456221_random 50067 62 + 206961 atacatatatctaccaatctatccaactat--atatacccatccacttactcacccacatacca s rn5.chr9 92359723 60 + 121549591 atccatatatctaccaacctatccaac--t--atacacccaaccatttacttatccacatacca i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121242 64 - 10418462 atccatccatccaccaatccatccatccatcaatccatccatccattcacccatccatccacca i speTri2.JH393335 I 1300 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94039461 4506 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e nomLeu2.GL397366 3636210 4444 + 6458163 I e gorGor3.chr2B 119439240 4482 + 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4522 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=6433.000000 s mm10.chr1_GL456221_random 50129 38 + 206961 atacaaacatctagctatccatataccttccagtctat s rn5.chr9 92359783 38 + 121549591 atacaagcatctagctatccatATACCTGCCAGTAAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121306 38 - 10418462 atccatccatccactaatccatccatccactaatccat i speTri2.JH393335 C 0 I 108 s gorGor3.chr2B 119443722 38 + 131632457 ACAAAAACACCTACTCTTTCATCTCCCTTCCCATTCCC i gorGor3.chr2B I 4482 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94039461 4506 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e nomLeu2.GL397366 3636210 4444 + 6458163 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4522 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=2568.000000 s mm10.chr1_GL456221_random 50167 13 + 206961 gctattcatctat s rn5.chr9 92359821 13 + 121549591 GTTatctgtccat i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121452 13 - 10418462 tccatccatccac i speTri2.JH393335 I 108 C 0 s gorGor3.chr2B 119443760 8 + 131632457 -----ccatctat i gorGor3.chr2B C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94039461 4506 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e nomLeu2.GL397366 3636210 4444 + 6458163 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4522 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=960.000000 s mm10.chr1_GL456221_random 50180 5 + 206961 ctatg s rn5.chr9 92359834 5 + 121549591 ccacc i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121465 5 - 10418462 caatc i speTri2.JH393335 C 0 C 0 s gorGor3.chr2B 119443768 5 + 131632457 tcatg i gorGor3.chr2B C 0 C 0 s danRer7.chr9 44589981 5 - 58232459 CCATA i danRer7.chr9 N 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94039461 4506 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e nomLeu2.GL397366 3636210 4444 + 6458163 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4522 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=7360.000000 s mm10.chr1_GL456221_random 50185 18 + 206961 tatctatctatgtatcta s rn5.chr9 92359839 18 + 121549591 catccacccactcatcca i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121470 18 - 10418462 catccatccactaatcca i speTri2.JH393335 C 0 C 0 s gorGor3.chr2B 119443773 18 + 131632457 tattcatccatatatcca i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640654 18 + 6458163 TATTTTTCTGTCTACCTA i nomLeu2.GL397366 I 4444 I 8 s danRer7.chr9 44589986 18 - 58232459 TATATATAtgtgtgtgtg i danRer7.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94039461 4506 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4522 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=4712.000000 s mm10.chr1_GL456221_random 50203 9 + 206961 tctatgtgt s rn5.chr9 92359857 9 + 121549591 tccatccat i rn5.chr9 C 0 I 6073 s speTri2.JH393335 4121488 9 - 10418462 tccatccat i speTri2.JH393335 C 0 I 4 s panTro4.chr2B 235492048 9 + 247518478 TTTATTTTT i panTro4.chr2B I 4466 C 0 s gorGor3.chr2B 119443791 9 + 131632457 tccatccat i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640680 9 + 6458163 CCTACTCTT i nomLeu2.GL397366 I 8 C 0 s danRer7.chr9 44590004 9 - 58232459 tgtgtgtgt i danRer7.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94039461 4506 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e hg19.chr2 231106215 4522 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=2184.000000 s mm10.chr1_GL456221_random 50212 30 + 206961 ctatctatgtatctatctatgtatctatgt s rn5.chr9 92365939 30 + 121549591 ctatccaccaatccattcattcattcatgc i rn5.chr9 I 6073 C 0 s speTri2.JH393335 4121501 30 - 10418462 ccatccaccaatccattcatccatttatcc i speTri2.JH393335 I 4 C 0 s panTro4.chr2B 235492057 30 + 247518478 CTGTCAACATACAAAAACACCTACTCTTTC i panTro4.chr2B C 0 I 20 s gorGor3.chr2B 119443800 30 + 131632457 ccattcatccatccatccatatatccatcc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640689 22 + 6458163 TCATCTCCCTTCCCATTCCCcc-------- i nomLeu2.GL397366 C 0 C 0 s danRer7.chr9 44590013 30 - 58232459 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgt i danRer7.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94039461 4506 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e hg19.chr2 231106215 4522 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=15477.000000 s mm10.chr1_GL456221_random 50242 23 + 206961 atctatgtatctatgtatctatg s rn5.chr9 92365969 23 + 121549591 accaaatcacccatctagctatc i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121531 23 - 10418462 atccatccattcatccatccatc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231110737 23 + 243199373 atctattcatgtattcatccata i hg19.chr2 I 4522 C 0 s panTro4.chr2B 235492107 23 + 247518478 atctattcatgtattcatccata i panTro4.chr2B I 20 C 0 s gorGor3.chr2B 119443830 11 + 131632457 ------------atccatccata i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640711 23 + 6458163 atctattcatgtgttcattcatg i nomLeu2.GL397366 C 0 C 0 s danRer7.chr9 44590043 23 - 58232459 gtgtgtgtgtgtgtgtgtgtgtg i danRer7.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94039461 4506 + 106825570 I e equCab2.chr6 17857413 833 + 84719076 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=1577.000000 s mm10.chr1_GL456221_random 50265 1 + 206961 t s rn5.chr9 92365992 1 + 121549591 c i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121554 1 - 10418462 c i speTri2.JH393335 C 0 C 0 s hg19.chr2 231110760 1 + 243199373 t i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492130 1 + 247518478 t i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119443841 1 + 131632457 t i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640734 1 + 6458163 t i nomLeu2.GL397366 C 0 C 0 s equCab2.chr6 17858246 1 + 84719076 T i equCab2.chr6 I 833 C 0 s danRer7.chr9 44590066 1 - 58232459 t i danRer7.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94039461 4506 + 106825570 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=61279.000000 s mm10.chr1_GL456221_random 50266 91 + 206961 atctatgtatctatc----------------tatctatctatctatctatctatctatctatctatctatct--------------aatctatcatcgatccatg--------cattcacccaactatc s rn5.chr9 92365993 105 + 121549591 atctatctgccagtc----------------tatgcagctatccattcaattatccactcattcatTACTCTCCAAATAACAACATAAccatccatctgtctgcc--------agttgacccacctatc i rn5.chr9 C 0 T 6232 s speTri2.JH393335 4121555 90 - 10418462 atccaccaatccatc----------------catccactaatccatccatccatccaccaatccatccatcc--------------atctatccatccattcatc--------cattca-ccatccatc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231110761 87 + 243199373 ----atccatccatc----------------catccattcatccatccatccatatatccatccatccatct--------------gtatattcatctgtccatc--------catccatccagccatc i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492131 87 + 247518478 ----atccatccatc----------------catccattcatccatccatccatatatccatccatccatcc--------------gtatattcatctgttcatc--------catccatccagccatc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119443842 59 + 131632457 ----attcatctgtc------------------------catccatccatccgtata----------------------------------ttcatctgtccatc--------catccatccatccatc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640735 91 + 6458163 ----gtctatccatc----------------catc----catccatccatccatctatccatccatccatct--------------gtgtatccatccatccatccatccagtcatccatccagccatc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94043967 107 + 106825570 ACCTACTCTTTCATCTCCCTTCCCTTTCCCccatctattcatgtattcatccatatatccatccatctattc--------------atatattcatccatccatc--------cagccagccagccatc i rheMac3.chr12 I 4506 C 0 s equCab2.chr6 17858247 90 + 84719076 ATCTAATTAAAGCTT----------------TATTTTTCTATCAATACAGAGAAACACCTATTCTTCCATCT--------------CCCTTCCTGTTGCCccacc--------ca-ccacccacccatc i equCab2.chr6 C 0 C 0 s danRer7.chr9 44590067 91 - 58232459 gtgtgtgtgtctgtg----------------tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTCAAA-------------------GAATGTTAAGTGGTCTTCAAAGAA---CATTTTTGTGACAGTC i danRer7.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=141554.000000 s mm10.chr1_GL456221_random 50357 135 + 206961 --------------------catcaatctaaccacccattcaCT-------TCACTCCTCCTGATCCTCCC----CA--------------TAGAT--GGATAGATGATGTTCAATATTTG---AATTTTCTCAGGAGACACAAGCAG-TATAGAAGCTTCACGTCAGGGTGTTTGAGATCTGTCT- s rn5.chr9 92359866 135 + 121549591 --------------------catccatcataccatccattcatT-------TCACTCCTCCTGATTCTCCT----CA--------------TAGAT--GGCTAGATTATGTTCAATATTTG---AATTTTCTCAGGAGACACAAGCAG-TATAGAAGCTTCACGACAAGCTGTTTGAGATCTGTCT- i rn5.chr9 T 6232 C 0 s speTri2.JH393335 4121645 135 - 10418462 --------------------catctatcaattcatccattcaCT-------------CTCCTTACACCCCCTGTGTA--------------CAGGC--AGACAAACCAGGCCCAGATTTTGGCTGCTTTTGTAAGAAGGCACAAACAC-ATAAGGAGGAGGAGTTCAGACTTGGTGAGGTTT-TCT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231110848 122 + 243199373 --------------------catcaatccatgcatcc--------------------ctccCCACA---------TA--------------CAGACAGAGACAGTCTATGTCCAGCTTCTTCCTGCTTTCCTTAAGAGGCACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492218 122 + 247518478 --------------------catcaatccatgcatcc--------------------ctccCCACA---------TA--------------CAGACAGAGACAGTCTATGTCCAGCTTCTTCCTGCTTTCCTTAAGAGACACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119443901 122 + 131632457 --------------------catcaatccatgcatcc--------------------ctccCCACA---------TA--------------CAGACAGAGACAGTCTATGTCCAGCTTCTTCCTGCTTTCCTTAAGAGACACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCC- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640826 122 + 6458163 --------------------catccatccatgcatcc--------------------ctccCCACA---------TA--------------CAGACACAGACAGTCTATGCCCAGCTTCTTCCTACTTTCCTTAAGAGACACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044074 122 + 106825570 --------------------cattcatccatgcatcc--------------------ctccCCACA---------TA--------------TAGACACAGACAGTCTATGCCCAGCTTCTTCCTGCTTTCCTTGAGAGAGACAAGTAGCAAAAGAAGGATGATCTCAGACTGGTTGGGGCTT-TCC- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17858337 142 + 84719076 --------------------catccatctgtacacccatccatcagtccatccaaccaCACTCATA---------TA--------------CACACATAGACAGACTATGCCCAGCTTCTGGTTGCTTTTCTCGAGAGACAGAAGCAGTGAAGGAAGGATGAGCTCAGACTGGGTGAAGTTT-CCT- i equCab2.chr6 C 0 C 0 s danRer7.chr9 44590158 171 - 58232459 CGTAACAGGTTATTTCAAACCACCTCTTTGGTCAACTTTAAAATTACATTTCTGGTCTTTAAAGCA---------TATTAAAGTTACCAGCCAGAT--ATGTAAACGACATTTAAAATTTG---ATTTTCATCATGGGAAATAGTCTT-TAAAACAATTCCACATGATTCTGTTTGAAATTT-ATTT i danRer7.chr9 C 0 N 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=760725.000000 s mm10.chr1_GL456221_random 50492 545 + 206961 TGAGTGTAGACCATACACCAAGAGAAGGAAGCTGAGAACTCTAGATGCAGCCAAGGA---TATTGAGTTATGAGT-GACAGT--GTTTCACCTAACTAGACATGGAGTCCTAATGTCAGCAT------------------------------TTGGGGTACAC-----------TACC----------------AAAG--AGCACTGGTCCCCTTCAGCCACTTT-TCCATGGTTGGGACAGGAGTGTGGACATGATGAATAAAATGGAAGCTGAG------CCTGGGAAAGACTTCTGAGGAGAACCTGGGAAGGGGATG-------TCCTCTT---TATCCACAGTGAACAGA----GACATCTATGATAGGAAAGGATGA-----TGAG-----CAGAACACACAGAAAGGGAGAAGAGGAGACATTTAGATTCAACTTCGTGG--GAAA-ACCAGGAACAGCAAGCTTACCAAAGAGACCGGACTGAGCTGGGGAAATGAGTGCTATGGGGG-AAAGGGCTAGGCTCACTTACACCACGAGGTGCAGAGTAGAATATGTGGAGAAGATTATATAA------AACAGAGA---------TGCT------AATAGACAGTGTA-AAGCATTCATGAGAACTACACACAGAGAAAAAAAGTGAAGA s rn5.chr9 92360001 547 + 121549591 TGAGTATAGACCATACACCAAGAGAGGGAAGTTGAGAACTCTAGATGCAGCCAAGGA---TCTTGAGTTGTGAGT-GACAGT--GTTTCACCTAACCAGACATGGAGTCCTAGTGTCATCAC------------------------------TTGGGGTACAC-----------TACC----------------GAGG--GGCACTGATATCCTTCAACTACTTTCCCCATGCTTGGGCCAAGCGTGTAGA---AATGAAGAAAATAAAAGCTGAGAAAACTCCTGGGTAAGACTTTTGAAGAGGACTTGGGAAGGGAATG-------TCCTCTT---TGTCCACAGTGAACAGA----GACTTTCATGATATGAAAGGATGA-----TGAC-----CAGAACATATAGAAAGGGAGGAGATGATATGCTTAGATTCAACTCTGTCA--GAAATATCAGGAACAACAAGCTAACTAAAGAGAACAGACCGAGCTGGGGAGATGAACACAATGGGGGAAAAGGGCTAGGCTCACTTATAAAATGAGGTGCAGAGTTTAATATGAGGAGAAAATTATATAA------AGTAGAGA---------TGCT------GATAAATAGTATACGAGGAGTGATCAGCCCTACACACAGATTAAAA-----ATGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4121780 424 - 10418462 TGTGTATAGAACATG----AAGAGAGGGAGAATGGAAAATGCAGACAGAACCATTAA----ATAAATTCCCAAGT-GATTGCCAATTTTACCTAAGCAGTCATGCAACTCATCTGTCACCATG-----------------------------TTGGAGTGCACGT---------TGTC----------------AGGGAAGGAGATAATTTCCACT--CTACTTT--CTGTGGTTGTGCCAGGAACTTGGACATAATGAGTACAACTGCAATGTAAAAAATTCTTGTGAAAGACTTTTGAAGTGGACCTGGTAAGGGGAAGGGTC---TCTGCTCCAGTGTCAATGGCAAAAAGATGAGGCCTTTGATGACATGGGAGAAAGA-----TAAG-------------ACAGAAAGACTGAAGGTGA-ATGTTTATATTTAAGTTT------------------------CATTTCCCCAGGAGA------------------------------------------TAAGCTCACTCATCCAACAAGGTGCAGCGTTTCCAAGGTGGAGAAAGTCAT----------------------------------------------------------------------------------------ACTA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231110970 638 + 243199373 TGCATATAGGACATAGGGAAAGAGAGAGAGAAAGAAAAATATAGTTTGAATCGTTAAATAAAGAGAGATCTGAGT-GATTGCCAGTTTTACCTCAATAGTTGTGGGATCCAAATATTACCACGTTGGGTAACATTTGGGTAATATTACCACATTGGGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGG--GGAGATAATTTTCAAC--TTATTTT-CTCGAGGTTATGCCAACAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC-TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTGCCCCTT---TGTTAATGGCAAA-AGATGAGGCCTTTGATACTATGGCAGAAAAA-----TAAG----ACAGAATATACAGAAAGACTGAAGTTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAATTAGAGAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAATATGGCACAGGAATTAAAAGGTGGAGAAAATACTGTGA--GAGGAACAGAGAGAAGAAAAATGCTCGAAGACAGAGACAGTGGA-GGAGAGGCACAAAAGTTGTACACAGAGAAAAA-----GAGA i hg19.chr2 C 0 I 5 s panTro4.chr2B 235492340 609 + 247518478 TGCATATAGGACATAGGGAAAGAGAGAGAGAAAGAAAAATATAGTTTGAATCGTTAAATAAAGAGAGATCTGAGT-GATTGCCAGTTTTACCTAAATAGTTGTGGGATCCAAATATTACCACG-----------------------------TTGGGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGG--GGAGATAATTTTCAAC--TTATTTT-CTCGAGGTTATGCCAACAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC-TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTGCCCCTT---TGTTAATGGCAAA-AGATAAGACCTTTGATACTATGGGAGAAAAA-----TAAG----ACAGAATATACAGAAAGACTGAAATTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAATTAGAGAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAATATGGCACAGGAATTAAAAGGTGGAGAAAATACTGTGA--GAGGAACAGAGAGAAGAAAAATGCTCGAAGACAGAGACAGTGGA-GGAGAGACACGAAAGTTGTACACAGAGAAAAA-----GAGA i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119444023 609 + 131632457 TGCATATAGGACATAGGGAAAGAGAGAGAGAAAGAAAAATATAGTTTGAATCGTTAAATAAAGGGAGATCTGAGT-GATTGCCAGTTTTACCTAAATAGTTGTGGGATCCAAATATTACCACG-----------------------------TTGGGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGG--GGAGATAATTTTCAAC--TTATTTT-CTCAAGGTTATGCCAACAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC-TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTGCCCCTT---TGTTAATGGCAAA-AGATGAGACCTTTGATACTATGGGAGAAAAA-----TAAG----ACAGAATATACAGAAAGACTGAAATTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAATTAGAGAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAGTATGGCACAGGAATTAAAAGGTGGAGAAAATACTGTGA--GAGGAACAGAGAGAAGAAAAATGCTCAAAGACAGAGACAGTGGA-GGAGAGGCACGAAAGTTGTACACAGAGAAAAA-----GAGA i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 3640948 608 + 6458163 TGCATATAGGACGTAGGGAAAGAGAGAGAGAAAGGAAAATATAATTTGAGTCATTAAATAAAGAGAGAGCTGAGT-GATTGCCAGTTTTACCTAAATAGTTGTGGGATCCAAATATTACCATG-----------------------------TTGGGTAATATTTGGGTAATAATACCACATTGGGTTATAAGGAAGG--GGAGATAATTTTCAAC--TTGTTTT-CTCGAGGTTATGCCAAGAGCATGGATATAGTGAGTAT-ATTGCAATATAGAAAAC-TCAGTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAGGGTCCCTG-CCCTT---TGTTAATGGCAAA-AGATGACACCTTTGATGGTATAGGAGAAAAA-----TAAG----ACAGAATATACAGAAAGACTGAAATTTAAATTTTTAGATTTAAATTTTGGATTGAAAAATTAGGAACAGAAAGCTAATTAGAGAGAACAGATAGATGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAATAAGGCACAGGACTTAAAAGGTGGAGAAAATATTATGA--GAGGAACAGAGAGAAGAAAAGTGCTCCGAGACAGAGACAGTGGA-GGAGAGGCACAAAAGTTATACACAGAGAAAAA-----GAGA i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94044196 605 + 106825570 TGCATATAGGACATAGGGAAAGAGAGAAGGAAAGGAAAATATAGATTGAATCATTAAATAAAGAGAGATCTGAGT-GACTGCCAGTTTTACCTAAATAGTCATGGGATTCAAATATTACCATG-----------------------------TTGGGTAATATTTGGGTAATAATACCACATTGGGTTATAAGGAAGG--GGAGATAATTTTCAAC--TTATTTT-CTCAAGGTTATGCCAAGAGCATGGATATAATGAGTAT-ATTGCAATATAGAAAAC-TCAGTGAAAAACTGTTGAAATGAGCTTCACAAAGGGAAGAGTCCCTGCCCCTT---TGTTAATGGCAAA-AGATGAGACCTTTGATGGTATGGGAGAAAAA-----TAAG----ACAGAATATACAGAAAGACTGaaatttaaa---ttaaaattaaa-ttgaaattgaaaaattaGGAACAGAAAGCTAATTAGAGAGAACAGATATAGGCATGGAAATGAGCACCATGGAAGAAAGGAGGTAAACTTGATTATTAAATAAGGCACAGGACTTAAAAGGTGGAGAAAATATTATGA--GAGGAACAGAGAGAAGAAAAATGCTCGAAGACAGAGACAGTGGA-GGAGAGGCATAAAAGTTATACACAGAGAAAAA-----GAGA i rheMac3.chr12 C 0 I 4 s equCab2.chr6 17858479 535 + 84719076 --------GGATATAGGCAAAGAGAGGGAGAATGAAAAATATTGATGGAGTTATTAAATGAAGAGAGACTGGAGTGGACTCTCAATTTCACCTAAATAAAATTTGAATCCAAATATTACCAGG-----------------------------TTCGTATATGT-----------TATT-------------AAGAAGG--AGAAATAATTTTCAAT--CTACTTTCCCTGAGATTGTGCCAGAAACATAGGCATAATGAGTGTAATTGCAATATAGAAAACTTGTGTGAAGGACTTTTGAAATGGATCTGGCTTTGGGAAGGATCACAGCTCATT---TGTCAATGGCAA--AGACAAGAATCTTAATGATATGGGAGAAGAAATATGTGAGATGAACAAAATATATGGAAAGGCTGAAGTTTAAATTTTTAGATTTAAATTTTAGGTTGAAAAATTAGAAACAGAAAGTTAA-GAAATAGAACAGATAGAAGCAGGGAAACGAGAACCAC---AGAAATGAGATAAGCTCAATAATAAAACAA-TTGTAGAATTAAAAAGGTAGAGTACATGATTTAAGAGAGAAACTCAGAGAGGGAAA-TGCT-------AAGGA------------------------------------------------- i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=2001.000000 s mm10.chr1_GL456221_random 51037 2 + 206961 AG s rn5.chr9 92360548 2 + 121549591 AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122204 2 - 10418462 AG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111613 1 + 243199373 -G i hg19.chr2 I 5 I 1 s nomLeu2.GL397366 3641560 2 + 6458163 AG i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94044805 2 + 106825570 AG i rheMac3.chr12 I 4 C 0 s equCab2.chr6 17859014 2 + 84719076 AT i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e gorGor3.chr2B 119444632 5 + 131632457 I e panTro4.chr2B 235492949 1 + 247518478 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-11594.000000 s mm10.chr1_GL456221_random 51039 99 + 206961 --AGGGAATTAAAAACCAGTAGGAAGCCAGTtaaatgacacttgctgccaagcctgttggtctgagtctgctccctgggactcacatttatacaggagagg s rn5.chr9 92360550 99 + 121549591 --GATGAATCAAAAgccagcaggaggccagttaaatgacacttgctgccaagtctgatgactcgagtttgctccctgggactcacatctgtgtaggagagg i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122206 46 - 10418462 --GGAGAACCAGAGG------GGGAG-----------------ACTGCTAAGACAG--GGCCTGAG----------------------------GGGGAGG i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3641562 46 + 6458163 --AACAAGTGAAAAGTTAGCAGAGAG---------TGAAAACTGCTTGCAAGA--GATG------------------------------------------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044807 46 + 106825570 --AATAAGTGAAAAGTTAGCAGAGAG---------TGAAAACTGCTTGCAAGA--GATG------------------------------------------ i rheMac3.chr12 C 0 C 0 s equCab2.chr6 17859016 31 + 84719076 GGAAAGAGTGGGTAG-GGGCATAAAG---------TTATAC------------------------------------------------------------ i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e gorGor3.chr2B 119444632 5 + 131632457 I e panTro4.chr2B 235492949 1 + 247518478 I e hg19.chr2 231111614 1 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-4089.000000 s mm10.chr1_GL456221_random 51138 69 + 206961 gctgattcctgtaagttttcttctgacctctacatgtgtgtcatggtatgtgAGAAACTCTCCCACCCC s rn5.chr9 92360649 69 + 121549591 gctgatgcctataagttgtcttctgacctctacctatgtgccatggtatgtgAGAGACTTTCCCACCCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122252 28 - 10418462 GC----GCCT----GCTGTCT---------------------ATGGTA-ATGGGGAAT----------- i speTri2.JH393335 C 0 C 0 s equCab2.chr6 17859047 9 + 84719076 ------------------------------------------------CTAGAGAAA------------ i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94044853 0 + 106825570 C e nomLeu2.GL397366 3641608 0 + 6458163 C e gorGor3.chr2B 119444632 5 + 131632457 I e panTro4.chr2B 235492949 1 + 247518478 I e hg19.chr2 231111614 1 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=771.000000 s mm10.chr1_GL456221_random 51207 5 + 206961 AAAAT s rn5.chr9 92360718 5 + 121549591 AAAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122280 4 - 10418462 -GAAT i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235492950 4 + 247518478 AGGA- i panTro4.chr2B I 1 C 0 s equCab2.chr6 17859056 5 + 84719076 AAAAT i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94044853 0 + 106825570 C e nomLeu2.GL397366 3641608 0 + 6458163 C e gorGor3.chr2B 119444632 5 + 131632457 I e hg19.chr2 231111614 1 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-7480.000000 s mm10.chr1_GL456221_random 51212 28 + 206961 ------GAATATATCAACAAGCAGCAGCAGCAAC s rn5.chr9 92360723 21 + 121549591 ------AAATAC-------AGCAACAGCAACAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122284 17 - 10418462 ------GAATGA-------AAAGTCAGCAG---- i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235492954 5 + 247518478 ------GAATA----------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444637 5 + 131632457 ------GAATA----------------------- i gorGor3.chr2B I 5 C 0 s equCab2.chr6 17859061 11 + 84719076 AAAGGAGAACG----------------------- i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94044853 0 + 106825570 C e nomLeu2.GL397366 3641608 0 + 6458163 C e hg19.chr2 231111614 1 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-3435.000000 s mm10.chr1_GL456221_random 51240 21 + 206961 AACAGTAAAAATAACAATAAG-- s rn5.chr9 92360744 21 + 121549591 AACCTTAAAAGTAACAATAAg-- i rn5.chr9 C 0 I 1404 s speTri2.JH393335 4122301 12 - 10418462 ------AAAGGGAACATT----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111615 16 + 243199373 ATAAGTGAAGTTAGCA------- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235492959 13 + 247518478 ---AGTGAAGTTAGCA------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444642 13 + 131632457 ---AGTGAAGTTAGCA------- i gorGor3.chr2B C 0 C 0 s equCab2.chr6 17859072 17 + 84719076 -AACAAAAAGTCAATA-----GA i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94044853 0 + 106825570 C e nomLeu2.GL397366 3641608 0 + 6458163 C e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-1531.000000 s mm10.chr1_GL456221_random 51261 12 + 206961 TTGAGAGCAAAT s speTri2.JH393335 4122313 6 - 10418462 ------GCACAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111631 9 + 243199373 --GAGAGTGAA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492972 9 + 247518478 --GAGAGTGAA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444655 9 + 131632457 --GAGAGTGAA- i gorGor3.chr2B C 0 C 0 s equCab2.chr6 17859089 9 + 84719076 --GTAGGGACA- i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94044853 0 + 106825570 C e nomLeu2.GL397366 3641608 0 + 6458163 C e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I e rn5.chr9 92360765 1404 + 121549591 I a score=-4693.000000 s mm10.chr1_GL456221_random 51273 11 + 206961 CTTATCTTCTG s rn5.chr9 92362169 11 + 121549591 CTTATCTTCTG i rn5.chr9 I 1404 C 0 s speTri2.JH393335 4122319 3 - 10418462 --CAT------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111640 8 + 243199373 ---AACTGCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492981 8 + 247518478 ---AACTGCTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444664 8 + 131632457 ---AACTGCTT i gorGor3.chr2B C 0 C 0 s equCab2.chr6 17859098 3 + 84719076 -----CTG--- i equCab2.chr6 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26023760 17037 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94044853 0 + 106825570 C e nomLeu2.GL397366 3641608 0 + 6458163 C e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=5707.000000 s mm10.chr1_GL456221_random 51284 8 + 206961 GGAAGGGA s rn5.chr9 92362180 8 + 121549591 GGAAGGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122322 1 - 10418462 -------A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111648 8 + 243199373 GCAAGAGA i hg19.chr2 C 0 I 2 s panTro4.chr2B 235492989 8 + 247518478 GCAAGAGA i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119444672 8 + 131632457 GCAAGAGA i gorGor3.chr2B C 0 I 2 s equCab2.chr6 17859101 8 + 84719076 AGTACAAG i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26040797 8 + 30916457 GGAAGAAA i myoLuc2.GL429770 I 17037 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94044853 0 + 106825570 C e nomLeu2.GL397366 3641608 0 + 6458163 C e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=39049.000000 s mm10.chr1_GL456221_random 51292 26 + 206961 GGAAACA---GTTTGAGACTTTGGAGGGA------- s rn5.chr9 92362188 26 + 121549591 GGAAACA---GTTTGAGACATTGGAGGGA------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122323 26 - 10418462 AAAGACA---GTTGGAGACATCTTGGGGC------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111658 26 + 243199373 GGGAACA---ATATGGGACATTGTAGGGA------- i hg19.chr2 I 2 I 3 s panTro4.chr2B 235492999 26 + 247518478 GGGAACA---ATATGGGACATTGTAGGGC------- i panTro4.chr2B I 2 I 3 s gorGor3.chr2B 119444682 26 + 131632457 GGGAACA---ATATGGGACATTGTAGGGA------- i gorGor3.chr2B I 2 I 3 s nomLeu2.GL397366 3641608 26 + 6458163 GGGAACA---ATATGGAACATTGTAGGGA------- i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94044853 26 + 106825570 GGGAACA---ATGTGGGACATTGTAGGGA------- i rheMac3.chr12 C 0 I 3 s equCab2.chr6 17859109 36 + 84719076 GGATAAAGTCAGTTTGGATATTGTGGGAATTAAGAG i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26040805 32 + 30916457 GGAGAGG---AGTTGGGATCCTGTAAGGCTCAAG-T i myoLuc2.GL429770 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e oviAri1.chr2 244287620 50769 + 263237078 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-6380.000000 s mm10.chr1_GL456221_random 51318 7 + 206961 AGGAGCT-- s rn5.chr9 92362214 5 + 121549591 CTGAG---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122349 5 - 10418462 TTGAA---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111687 4 + 243199373 -AGGG---- i hg19.chr2 I 3 I 1 s panTro4.chr2B 235493028 4 + 247518478 -AGGG---- i panTro4.chr2B I 3 I 1 s gorGor3.chr2B 119444711 4 + 131632457 -AGGG---- i gorGor3.chr2B I 3 I 1 s nomLeu2.GL397366 3641637 4 + 6458163 -AGGG---- i nomLeu2.GL397366 I 3 I 1 s rheMac3.chr12 94044882 4 + 106825570 -AGAG---- i rheMac3.chr12 I 3 I 1 s tarSyr1.scaffold_175677 881 4 - 3989 -TGGG---- i tarSyr1.scaffold_175677 N 0 T 851 s equCab2.chr6 17859145 7 + 84719076 AAGAG--TT i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26040837 7 + 30916457 ACAAG--TC i myoLuc2.GL429770 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e oviAri1.chr2 244287620 50769 + 263237078 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-7963.000000 s mm10.chr1_GL456221_random 51325 3 + 206961 AGG- s speTri2.JH393335 4122354 3 - 10418462 AGT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111692 2 + 243199373 AG-- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235493033 2 + 247518478 AG-- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119444716 2 + 131632457 AG-- i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3641642 2 + 6458163 AG-- i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94044887 2 + 106825570 AG-- i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17859152 3 + 84719076 GG-T i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26040844 3 + 30916457 AC-T i myoLuc2.GL429770 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 43616 8697 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I e rn5.chr9 92362219 0 + 121549591 C a score=1263.000000 s mm10.chr1_GL456221_random 51328 1 + 206961 A s speTri2.JH393335 4122357 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111694 1 + 243199373 A i hg19.chr2 C 0 I 8 s panTro4.chr2B 235493035 1 + 247518478 A i panTro4.chr2B C 0 I 8 s gorGor3.chr2B 119444718 1 + 131632457 A i gorGor3.chr2B C 0 I 8 s nomLeu2.GL397366 3641644 1 + 6458163 A i nomLeu2.GL397366 C 0 I 8 s rheMac3.chr12 94044889 1 + 106825570 A i rheMac3.chr12 C 0 I 8 s papHam1.scaffold15394 52313 1 - 58077 A i papHam1.scaffold15394 I 8697 I 4235 s equCab2.chr6 17859155 1 + 84719076 G i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26040847 1 + 30916457 A i myoLuc2.GL429770 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146712927 2428 + 158406734 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I e rn5.chr9 92362219 0 + 121549591 C a score=148985.000000 s mm10.chr1_GL456221_random 51329 96 + 206961 ACTGAAAGCAACTTCTGGCCCAAGG-TGAT--TACATCAGCTGTGGGTTTTCAGACTGTGGTGCCCCCAA-CTCTCAAAGTGG----CAT-TGGAAAACATGCAG s rn5.chr9 92362219 95 + 121549591 -CTGAAACTAAACTCTGGCCTAAGG-TGAC--TCTATCAGCTGTGAGTTTTCAGGTTGTGGTGACCCCAA-GTCTCAAAGTGG----CAT-TGGGAAATATGCAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122358 78 - 10418462 ACTGGACAGAACTTCTGGCACAAGGATGAT--CACTTTAGCAGAGAGTTTTCAG-----------------CTATTAACGTGA----CAC----AATACATTCAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111703 99 + 243199373 -ACAGAAATAACTTCTGGCCCAAGAATGAG-ACATGTTAGCAGCGAGTTTTCACATTATGGTGTCCCCAGCCTATCAAAATGG----CACCTGTAATGTCCTCAG i hg19.chr2 I 8 C 0 s panTro4.chr2B 235493044 99 + 247518478 -ACAGGAATAACTTCTGGCCCAAGAATGAG-ACATGTTAGCAGCGAGTTTTCACATTATGGTGTCCCCAAGCTATCAAAATGG----CACCTGTAATGTCCTCAG i panTro4.chr2B I 8 C 0 s gorGor3.chr2B 119444727 99 + 131632457 -ACAGAAATAACTTCTGGCCCCAGAATGAG-ACATGTTAGCAGCGAGTTTTCACATTATGGTGTCCCCAAGCTATCAAAATGG----CACCTGTAATGTCCTCAG i gorGor3.chr2B I 8 C 0 s nomLeu2.GL397366 3641653 99 + 6458163 -ACAGAAATAACTTCTGGCCCAAGAATGAG-ACATGTTAGCAGCGAGTTTTCACATTATGGTATCCCCAAGCTATCAAAATGG----CACCTGTAATGTCCTCAG i nomLeu2.GL397366 I 8 C 0 s rheMac3.chr12 94044898 97 + 106825570 -ACAGAAATAATTTCTGGCCCAAGAATGAG-ACATGTTAGCAGTGAGTTTTCACG--AGGGTGTTCCCAAGCTATCAAAATGG----CACCTGTAATGTCCTCAG i rheMac3.chr12 I 8 C 0 s equCab2.chr6 17859156 102 + 84719076 CACAGAAGCAACTTCTGGCACTAGGAGTGGAACATGGTAGCAGTGAGTTGTCAGATTATGGTGTCCTCAA-GTCTCAAAGTGGCACTTTTTGGTAATATATTT-- i equCab2.chr6 C 0 I 2 s myoLuc2.GL429770 26040848 91 + 30916457 AACAGAAGCA---TCTGCCAGTAAAAGTGG-GCATCTCAGTAGTGAGTTTTCAGATTAAGGTCTCCCCAG-AT---AGAGTAG----TTCCCATAACATACTC-- i myoLuc2.GL429770 C 0 I 2250 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=520244.000000 s mm10.chr1_GL456221_random 51425 345 + 206961 GGACAATCAGTCTCTCCC--AGTCATTCTTATCTGTTCCCATCTGTAAGTTAATGATCCCCAAACATGAA-CTTCAC---A----CCTGTCAGCTTCC-TCATCTGCAGGCCTT---------------GCTATCTTCCTTCACCT-CCTCCACAGACTTCTCTATCTGGATGC--TTCAAAAACTTCATTATGAGGCACTGGCACAA--TTCCAT-----A--TTATATCTGA-GTTGACAGAGGACCTGCCTCCT---CTGCTG-TCTCTGTTTCAGCCCGGGACACTATTTCTCCATTC-TGAAGCAGG---------GTTGATACTGACTGCT----CCTCCCTAATGTAAAACCATC------------------------------------TCCTACTTACTA-CATCTGTCCATTTTTT------T-TCCAACAGAAA s rn5.chr9 92362314 353 + 121549591 GAGCACTCAGTCTCTCTC--AGGCATTCTT----------ATCTGTAAGTTAATGATCCCCAAACATGAACCTTCAC---ACTTGCCTGTCAGCTTCC-TCAGCTGCAGGCCTTGGTTACCTTTATGTAGCTCTCTTTATATAGCT-CTCTCACAGACTTCTCTATCTGGATGC--TTCAAGAACTTCAGCATGAAGCGCTTGCACAG--TTCCA----------CATATCTGA-ATAGACAGAAGCCCTGTCTCCTGTGCTGGTG-TCTCTGTTTCAGCACGGGACAGTATTTCTCCATTC-TGAAGCAGG---------GTTGTTACTGACTGCC----TCTCCCTAATGGAAAACACTC------------------------------------TTCCATATATCA-CATCTGTCCA--TTTT------C-CCCAACACAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122436 308 - 10418462 AGGCAATGGGCCTTCCCC--AGGCGTCCTTATCTACTCCCGCCTACAAGCGAATGATCCCAAGACACAT--CTCCTG---GCTTGTCTTCCAGCCTCCTTCATCCATGAGCCTG---------------AATTCATTCAtgcagataatctgagagtcgtctgcatttagatgcttttcaggagcctcagtatgagacataactaaaa--tcgcACCTGCAA--CCCTTCCTGACACCGACCG--GACCTGCCTCGTGT-CTGGGA-GTTCGCTGTCAGCACG-----CTATTTCTCCATTG-TCAACCTGGC-------AGTTCTTAAAGACTG---------------------------------------------------------------------------------GTCCC--TCTC------C-CTCAAC----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231111802 402 + 243199373 AGGCAGTCGACCTCCCCCTGAGGCtttcatgtct-ctcccatctataacttaatgatttcaaaacacatatgtccag---atttatcttctaagttcattcatctgagtacctg---------------aatacgttcatgaagat-atctgaaagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga--gtacat-----a--ccatcttt---cctgacaca-gatctgactcctctcccagtgttccctatctcaggatgaaacactattactccattcttgaagcagaaacctaggagccactcatgactcaccccacctccctcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgtcca--tttccttccac-cccaacacaaa i hg19.chr2 C 0 I 10 s panTro4.chr2B 235493143 402 + 247518478 AGGCAGTCGACCTCCCCCTGAGGCtttcatgtct-ctcccatctataacttaatgatttcaaaacagatatgtccag---atttatcttctaagttcattcatctgagtacctg---------------aatacattcatgaagat-atttgaaagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga--gtacat-----a--ccatcttt---cctgacaca-gatctgactcctctcccagtgttccctatctcaggatgaaacactattactccattcttgaagcagaaacctaggagccactcatgactctccccacctccctcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgtcca--tttccttccac-cccaacacaac i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119444826 402 + 131632457 AGGCAGTCGACCTCCCCCTGAGGCtttcatgtct-ctcccatctataacttaatgatttcaaaacacacatatccag---atttatcttctaagttcattcatctgagtacctg---------------aatacgttcatgaagat-atttgaaagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga--gtacat-----a--ccatcttt---cctgacaca-gatctgactcctctcccagtgttccctatctcaggatgaaacactattactccattcttgaagcagaaacctaggagccactcatgactctccccacctccctcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgccca--tttccttccac-cccaacacaaa i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3641752 401 + 6458163 AGGCAGTCGACCTCCCCCTGAGGCTTTCATGTCT-CTCCCATCTATAACTTAATGATTTCAAAACACATATGTCCAG---ATTTATCTTCTAAGTTCATTCATCTGAGTACCTG---------------AATACATTCATGAAGAT-ATTTGAAAgacctctccatttggatgtttttcaggaacctcaatac-agacacctccaaga--gtacat-----a--ccatcttt---cctgacaca-gatctgactcctttcccagtgttccctatctcaggatgaaacactattactccattcttcaagcagaaacctaggagccactcatgactctccccacctccctcaacttaaacaccccatcaaccatccagtagacttttagtgag-------ttctacatatct-cacctgtcca--tttccttccac-cccaacacaaa i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94044995 403 + 106825570 AAGCAGTCAGCCTCTCCCTGAGGCTTTCATGTCT-CTCCCATCTATAACTTAATGATTTCAAAACACAGATGTCCAG---ATTTATCTTCTAAGTTCATTCATCTGAGTACCTG---------------AATATGTTCACGAAGAT-ATTTGAAAgacctcttcatttggatgtttttcaagaacctcaatacaagacacctccaagattgtacat-----a--ccatcttt---cctgacaca-gatctaacttctctcccagtgttccctatctcaggatgaaacactattactcccttcttcaagcagaaacctagaagccactcatgactctccccacctccctcaacttaagcaccccatcaa-catccagtagacttttagtgag-------ttctacatacct-cacctgtcca--tttccttccac-cccaacacaaa i rheMac3.chr12 C 0 I 1 s equCab2.chr6 17859260 409 + 84719076 AGGCAATGGGACTTCCCCC-AGCCATTCTTGTCTACACccatctataacttaataatcccaaagttcctatctctggcccacttgtcttctaagctcattcacctgagtgcctg---------------aataagtttgtgcaggg-atctgaaagccatctccatttgggcgtttttcaggaacctcaatatgagacacttccacaa--tttcat-----aagccatcttt---gtagactccatatctgccttctttcctgatgttccctatctgagtgtagaacactattgttccattcttcaagcagaaacctgggagtcatcagtgactcatcc--cccgcctcaactcacacacctcatatatcatcta------ttttagtcaactatacctttaacttgtctccacctgtcca--ttcctttccacacccaacacaaa i equCab2.chr6 I 2 I 6 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=12248.000000 s mm10.chr1_GL456221_random 51770 19 + 206961 AGGCAAATCAGATCTCTCT-- s rn5.chr9 92362667 19 + 121549591 AGGCAGATCGGATCTCTCT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122744 7 - 10418462 -------TTAGACC------- i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235493546 19 + 247518478 actctggtaagatctctct-- i panTro4.chr2B I 1 I 4 s gorGor3.chr2B 119445229 19 + 131632457 acgctggtaagatctttct-- i gorGor3.chr2B I 1 I 4 s nomLeu2.GL397366 3642154 19 + 6458163 actctggtaagatctctct-- i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94045399 19 + 106825570 actctggtaagatctctct-- i rheMac3.chr12 I 1 C 0 s equCab2.chr6 17859675 16 + 84719076 -----agacaaatatctcttt i equCab2.chr6 I 6 I 5731 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e hg19.chr2 231112204 10 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=4091.000000 s mm10.chr1_GL456221_random 51789 74 + 206961 AATTCCAAtttattttattttatatatatgaccattttgcttgcaaatataaatatatacaccatatgcttccc s rn5.chr9 92362686 72 + 121549591 AATTTTAAtttattttattttatatatatgacagttttgcttgcatgaataa--atatacaccacatacttgcc i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122751 37 - 10418462 --ATCCAGTTTGGTTGATTCTACCTTT-----------------------------------CACATACCTCCC i speTri2.JH393335 C 0 I 37 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94045418 0 + 106825570 C e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642173 0 + 6458163 C e gorGor3.chr2B 119445248 4 + 131632457 I e panTro4.chr2B 235493565 4 + 247518478 I e hg19.chr2 231112204 10 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=5848.000000 s mm10.chr1_GL456221_random 51863 106 + 206961 tggcatccaaagaagtcccaatagggtgtcaca-gttttgggaacccaaactgcagagcattgtgagctgccacgtggtgctgggaattgactctggatcccctgga s rn5.chr9 92362758 107 + 121549591 tggcatccaaggaagtcacaataaggtgtcaaatcttccgggaactggaattgcacaaagttttaacctgccatgtggtgctggaaattgaccctgtgtcccctgaa i rn5.chr9 C 0 C 0 e chrPic1.JH584609 1069294 5392 + 7941789 I e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4122788 37 - 10418462 I e rheMac3.chr12 94045418 0 + 106825570 C e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642173 0 + 6458163 C e gorGor3.chr2B 119445248 4 + 131632457 I e panTro4.chr2B 235493565 4 + 247518478 I e hg19.chr2 231112204 10 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=1743.000000 s mm10.chr1_GL456221_random 51969 27 + 206961 agagcaaa--aagtgctcttgaactgcag s rn5.chr9 92362865 26 + 121549591 agagcaaa--aagtgctctt-aaccattg i rn5.chr9 C 0 C 0 s chrPic1.JH584609 1074686 25 + 7941789 AGAGTAAAACAAATGTACTTCAACC---- i chrPic1.JH584609 I 5392 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4122788 37 - 10418462 I e rheMac3.chr12 94045418 0 + 106825570 C e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642173 0 + 6458163 C e gorGor3.chr2B 119445248 4 + 131632457 I e panTro4.chr2B 235493565 4 + 247518478 I e hg19.chr2 231112204 10 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-1002.000000 s mm10.chr1_GL456221_random 51996 25 + 206961 agccatcttttcagtctc---ACAAATC s rn5.chr9 92362891 25 + 121549591 aaccatccttccagaccc---ACAAATC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122825 12 - 10418462 AGTCAACATTTC---------------- i speTri2.JH393335 I 37 C 0 s chrPic1.JH584609 1074711 19 + 7941789 ---------TTCAGAATCTAGAAAGATT i chrPic1.JH584609 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94045418 0 + 106825570 C e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642173 0 + 6458163 C e gorGor3.chr2B 119445248 4 + 131632457 I e panTro4.chr2B 235493565 4 + 247518478 I e hg19.chr2 231112204 10 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=3189.000000 s mm10.chr1_GL456221_random 52021 10 + 206961 AGATCTCTTA s rn5.chr9 92362916 10 + 121549591 AGATCTCTTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122837 7 - 10418462 ---CCCCTTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231112214 10 + 243199373 agatctctct i hg19.chr2 I 10 C 0 s chrPic1.JH584609 1074730 10 + 7941789 AGATTCCACA i chrPic1.JH584609 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94045418 0 + 106825570 C e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642173 0 + 6458163 C e gorGor3.chr2B 119445248 4 + 131632457 I e panTro4.chr2B 235493565 4 + 247518478 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-3327.000000 s mm10.chr1_GL456221_random 52031 7 + 206961 TTTCATC s rn5.chr9 92362926 7 + 121549591 TTTCATC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122844 4 - 10418462 TCTC--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231112224 3 + 243199373 ctt---- i hg19.chr2 C 0 I 1 s nomLeu2.GL397366 3642173 3 + 6458163 ctt---- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94045418 3 + 106825570 ctt---- i rheMac3.chr12 C 0 I 1 s chrPic1.JH584609 1074740 7 + 7941789 GTTCATC i chrPic1.JH584609 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119445248 4 + 131632457 I e panTro4.chr2B 235493565 4 + 247518478 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-160.000000 s mm10.chr1_GL456221_random 52038 4 + 206961 TTAA- s rn5.chr9 92362933 4 + 121549591 TTAA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122848 3 - 10418462 -TGA- i speTri2.JH393335 C 0 C 0 s chrPic1.JH584609 1074747 4 + 7941789 -TGAA i chrPic1.JH584609 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94045421 1 + 106825570 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642176 1 + 6458163 I e gorGor3.chr2B 119445248 4 + 131632457 I e panTro4.chr2B 235493565 4 + 247518478 I e hg19.chr2 231112227 1 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=70477.000000 s mm10.chr1_GL456221_random 52042 82 + 206961 GACTAAACAAACAGTCAT-----TGATCTCAAAT------------GCCTTTTCTCATTTCATCTTTC-CCCATCAAACGTACTCTCTAGAAC---TCAACCA s rn5.chr9 92362937 88 + 121549591 GGCTAAGAAAACAGCCCTGGGGGGGGTCTCTAAT------------GTCTTTTCTCATTTCATCTTGC-TCCATCAAACTCACTCTCTTGAAC--TTCGACCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4122851 80 - 10418462 GATTATAGAAACGACTTC-----CAGGCTCAGA-----------------TTTCCCCTCCTGTCTTGC-CCCATCACATGCATTTTGTGGAATCCCTTGAGAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231112228 78 + 243199373 gactggagcaacagcctc-----tagactcaca-----------------tctttcctctgatcttgtacctctcacatccattctttccaac---tcaaaca i hg19.chr2 I 1 C 0 s panTro4.chr2B 235493569 78 + 247518478 gactggagcaacagcctc-----tagactcaca-----------------tctttcctctgatcttgtacctctcacatccattctttccaac---tcaaaca i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119445252 78 + 131632457 gactggagcaacagcctc-----tagactcaca-----------------tctttcctctgatcttgtacctgtcacatccattctttccaac---tcaaaca i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 3642177 78 + 6458163 gactggagcaacagcctc-----tagactcacc-----------------tatttcctctggtcttgtacctctcacatccattctttccaac---tcaagca i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94045422 78 + 106825570 gactggagcaacagcctc-----tagactcaca-----------------tctttcctctgatcttgtacttctcacatccattctttccaac---tcaaaca i rheMac3.chr12 I 1 C 0 s chrPic1.JH584609 1074751 87 + 7941789 AACTAACTAAAAGACCTT-----TGGTGGTGTACGGTACCTTTGCAGATTTATTTTATCTGATGATAGGTGCCTCAGGCtagatctacacta----------- i chrPic1.JH584609 C 0 N 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=35685.000000 s mm10.chr1_GL456221_random 52124 31 + 206961 GACACTCAGGGAAATGC-AGTTGGCAAAGCTT s rn5.chr9 92363025 31 + 121549591 GACACTCAGAGAAATGT-AGTTGACAAAGCTT i rn5.chr9 C 0 I 774 s speTri2.JH393335 4122931 32 - 10418462 GACTCTAAGAAAAATGTGAGTTGGCATAACCT i speTri2.JH393335 C 0 I 2 s hg19.chr2 231112306 31 + 243199373 actctttcaaaaattga-agttggcttatctt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493647 31 + 247518478 actctttcaaaaattga-agttggcttatctt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119445330 31 + 131632457 agtctttcaaaaattga-agttggcttatctt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3642255 31 + 6458163 actctttcaaaaatgga-agttggcttatctt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045500 31 + 106825570 actctttcaaaaatgga-agttggcttatctt i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=201200.000000 s mm10.chr1_GL456221_random 52155 147 + 206961 -CCTCTCTCCATGAGTTCAGCAACTTCCTGGTGTCAGCAGCATTGGCTCC--TTTCCTCCCTGAATACTGCAACTTCCTGTCTGCCTCTCTTGTCCT---AGAAAACAG--TGTATGAAACTTTCTTAGTTATTTTGGTTTCTTGGATCTTCTTT s rn5.chr9 92363830 147 + 121549591 -TCTCTCTCCCTGAGTTTAACAGCTTCCTGGTGTCAGTAGGATCCATTCT--TTTCCTCCCTGAAGGTTGCAGCTTCCTGCCTGCCTCTCTTGTCCTTCAAGAGAACAG--CGTGTGAAACATTCTCAGTTACTTTGATTTCTT---TGTTCTTT i rn5.chr9 I 774 C 0 s speTri2.JH393335 4122965 149 - 10418462 -CTTTCCTGCTTGAGGCCAATGACTTCTTGCTGTCATAAAGGCTAAATCCATTTTCCTCCCCAAAT-CTCCAGCTTCATGTCTGCCTCTCCTGCTCTT--ACTTCAGGG--TGAATGGGACTTCTGGAGTGATTTTGATTTTCCGGTTCCCCCTT i speTri2.JH393335 I 2 I 14935 s hg19.chr2 231112337 152 + 243199373 acatttctactttaaatcAATAACTACTTGGGGTCATAAGGATTAAATCTA-TTTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTGCAATT--ACTTCAAGGTTTATATACAAATTTTCTAGTCATTGTCATTTTCTGATGACTCTTT i hg19.chr2 C 0 I 2 s panTro4.chr2B 235493678 152 + 247518478 acatttctactttaaatcAATAACTACTTGGGGTCATAAGGATTAAATCTA-TTTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTGCAATT--ACTTCAAGGTTTATATACAAATTTTCTAGTCATTGTCATTTTCTGATGACTCTTT i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119445361 151 + 131632457 acatttctactttaaatcAGTAACTACTTGGGGTCATAAGGATTAAATCT--TTTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTGCAATT--ACTTCAAGGTTTATATACAAATTTTCTAGTCATTGTCATTTTCTGATGACTCTTT i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3642286 151 + 6458163 atgtttccactttaaatcAATAACTACTCGGGGTCATAAGGACTAAATCT--ATTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTGCAATT--GCTTCAAGGTTTATATACAAATTTTCTAGTGATTGTCATTTTCTGATGACTCTTT i nomLeu2.GL397366 C 0 I 3170 s rheMac3.chr12 94045531 151 + 106825570 acatttctactttaaatcAATAACTACTTGGGGCCATAAGGATTAAATCT--ATTTTTTCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTGCAATT--ACTTCAAGGTTTATATACAGATTTTCTAGTCACTGTCATTTTCTGATGACTTTTT i rheMac3.chr12 C 0 I 2 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=4685.000000 s mm10.chr1_GL456221_random 52302 5 + 206961 GATCT s rn5.chr9 92363977 5 + 121549591 GATCC i rn5.chr9 C 0 C 0 s hg19.chr2 231112491 5 + 243199373 CATCT i hg19.chr2 I 2 I 3186 s panTro4.chr2B 235493832 5 + 247518478 CATCT i panTro4.chr2B I 2 I 6468 s gorGor3.chr2B 119445514 5 + 131632457 CATCT i gorGor3.chr2B I 2 I 8756 s rheMac3.chr12 94045684 5 + 106825570 CATCT i rheMac3.chr12 I 2 I 4890 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4123114 14935 - 10418462 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=419.000000 s mm10.chr1_GL456221_random 52307 8 + 206961 ATTGCCTG s rn5.chr9 92363982 8 + 121549591 TTTACCTG i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4123114 14935 - 10418462 I e rheMac3.chr12 94045689 4890 + 106825570 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=10871.000000 s mm10.chr1_GL456221_random 52315 114 + 206961 TTGTGGGAA--ATAGGGAGAAATACTTGTGATT---GTTGCTTCGAACAACCTAATGCTTATGGGTAGAATATG-TGGGTCCTTTATTCATGTCAATGTATTGGTTACTGGAGAAGGACT s rn5.chr9 92363990 108 + 121549591 TCA------------GGGGAAATACTTGTGGCTCCTGCTGTTTGGAACAACCTAATGCTTATGGGTAGAATATGAGGGGTCCTTTGCTCATGTTGAAGTATTGGTTATTGGGGAAGGACC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138049 116 - 10418462 TTTTGGGAATCACAAGGAGAAATTCTTGTGAAT---TCTGTTTGGAACAATATGGCCTTCATTGTTTGAATATG-TGTTTTTCCTGCTCAGGTTGAAGTAATAAGTTCCAAGGAATGACT i speTri2.JH393335 I 14935 I 327 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94045689 4890 + 106825570 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=5136.000000 s mm10.chr1_GL456221_random 52429 70 + 206961 GTGTCTTGGTCTTCTGACTATTTGTGATACACAGTCAATGTTGTCATTTGGATTCCTTGTACTCCTGATt s rn5.chr9 92364098 70 + 121549591 GTGTTTGGCTTTTCTGGCTGTTTGTGATACACAGTCAATGTTGTCATGTTGATTCCTTGTACTCCTGGTT i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4138165 327 - 10418462 I e rheMac3.chr12 94045689 4890 + 106825570 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 52499 173 + 206961 ttctttatatgagtacactgtacctgtcttcagacacacaccagtagagtgtgcatcagatcccattatagatgattgtgatccaccatgtggttgctgggaattgaactcaggacctatgtgagagcagtcagtgctcttaacctctgagtcatctctccagccccCTGATT e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4138165 327 - 10418462 I e rheMac3.chr12 94045689 4890 + 106825570 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I e rn5.chr9 92364168 0 + 121549591 C a score=120.000000 s mm10.chr1_GL456221_random 52672 4 + 206961 TTCT s rn5.chr9 92364168 4 + 121549591 TTTC i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4138165 327 - 10418462 I e rheMac3.chr12 94045689 4890 + 106825570 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=8006.000000 s mm10.chr1_GL456221_random 52676 118 + 206961 TATATTCCCTGAACTTCCTGGTTCCACTTGAGCACACTTTATCTGGTACCTCTGCATGGTGGATTGTCTGGTAC--CTCTGCATGGTTGATTATATGGTACCTCTGCATGGTTGATTGAC s rn5.chr9 92364172 74 + 121549591 TATAGTCCCTGAACTTCCTGGTTCCATTTGAGCACACT-----------------------------GAGGTAT--TTCC---------------TGGTCCCTCTGCATGGTTTATTGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138492 76 - 10418462 TATTTTCTGTGAACTCTCTGGCTCCACCTGAGCATACT-----------------------------GAGATACGTTTCT---------------GGGTCCTTCTGCGTGGTCTATTGTG i speTri2.JH393335 I 327 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94045689 4890 + 106825570 I e equCab2.chr6 17859691 5731 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212408822 16374 + 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=27973.000000 s mm10.chr1_GL456221_random 52794 165 + 206961 TTCTTGTTTCTCTTCAGCATCC------------------AAAACGAATGA--TGAACAAGC---AGAGGAGATGC------------AATGCAATGGAGGAGGTGAGT----CTTCATTTG----------------TGAGGCTGC-------------TAGAGAGAAAGACCC-CACCC----CTTTTCCCATCTGACCCTGTTCT-------TTACA--TACTCAGGTGAAGTCATAGAGGCAG- s rn5.chr9 92364246 208 + 121549591 TCCTTGTTTCTCTTCAGCATCCTACAGTCCTGGAAATACACAAATGAGTGC--TGGACAGGC---AGAGGAGGTGCCCAGCCTTCCACAGTGCAATGGAGGAGATGAGCGAGACTTCACTTG---CCAGTCAGCTGG-TGAGTCTGC-------------CAGAGAGAAAGACGC-CCCACTCCACTTTCCCCATCCTACCCTATGC----------------ACAGAGAAGATGTCCCAGAGGCAG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138568 208 - 10418462 TCCTTGTATCTCTTCAGTGTCCTGGGAACTGGATACTACCCAGATGGCCCCCACAGACAATC--TAGAGGAGGTGGTCAGCCATTCACTGTGGACTGGAGAAGGCAATTG---TGTTATCTAGTCCCAAGCAACTGC-GGAATCTTT---------------------GTTTCTC-CCCGT----CTTCTCCCATTCCACCCTGCTGC-------TTGCAGTTACCAGGCAGAGGAGCCAAAGGAAG- i speTri2.JH393335 C 0 C 0 s felCat5.chrC1 212425196 235 + 221441202 TCCTTGTTTCCCTTCAGGGTCCTGTGATTCTGAATCTCCTCAAATGACCAG--TGAAGAAGCACCAGAGAAGGTGCCCAGCCAAGTACTATATGATGGGGAAGGTGATTATAATTTCAACTC---CCATTTCAC----TGAATCTTTGTTTCTCTATCTGCAAGTAGGAAAATCT-CCCCTTA--CTTCTCCCCACCTCCACTGTTCCCCTTCACTTACCCATACAGAAGGAATGTG-TAGAGCCAAG i felCat5.chrC1 I 16374 I 3 s equCab2.chr6 17865422 240 + 84719076 TCCTTGTTTCTCTTCAGTGTCCTGTGATCCTGAAGCTCCCCAAAGGACCAA--CGAAGAAGAACCAGAGGACGTGCCCAGCCAGCAACTATGTGATGGAGAAGGTAATTGTGATTTCAATTC---CCATTTAACTAATTGAATCTTTGTTTTCCTGTCTATAGGGAGGAGAATCTCCCCCTTT--TTTCTCCCCTTGTCCCCTGCTCCCCTTCAAATACCCATACAGAAGAAATGTG-TAAAGCCAAG i equCab2.chr6 I 5731 I 3 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 94045689 4890 + 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-1782.000000 s mm10.chr1_GL456221_random 52959 6 + 206961 AAACAA s rn5.chr9 92364454 6 + 121549591 CACCAT i rn5.chr9 C 0 C 0 s turTru2.JH478086 133013 3 - 138096 AAA--- i turTru2.JH478086 N 0 T 3932 s felCat5.chrC1 212425434 3 + 221441202 AAA--- i felCat5.chrC1 I 3 C 0 s equCab2.chr6 17865665 3 + 84719076 AAA--- i equCab2.chr6 I 3 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4138776 0 - 10418462 C e rheMac3.chr12 94045689 4890 + 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=25517.000000 s mm10.chr1_GL456221_random 52965 138 + 206961 GGATCA-AAAT-AATGGGGAATGAGATGTGTAATGAAGCAAC-AGATGGGTGGTCAATC------CTTTGGTGACAGAGA-AGAAGCCTTATCAGGCTCCTCTTC---AGAGTCTCAAAACATGGCCATTCAATGCAGGAGACA------------------CTAAGCC s rn5.chr9 92364460 138 + 121549591 GGGTCACAAAG-AATGGGCAATGCAATGTGTAAGGAGGGAAC-AGATCAATCCTCTGTC-------TGTGGTGACAGACA-AGGAGCCATGTCAACCTGCACTTC---AGAGTCCCAAAACATGACCATCCTCTCCAGGAGACA------------------CTAAGCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138776 152 - 10418462 GGGTCAGAAAT-AAGAGAGAATGTGCTGTTCAGGGAGGGAGCGAGGTGGGAAGACTGTCCCCTGCCTCTGGAAAGAGTGACAGGAGCTGCCTTAGCCTCCACGTCAGGAGGATTCAAAGGCAGGAGGGTCTGAGGCCAGGAACGT----------------CCCAGGAG i speTri2.JH393335 C 0 C 0 s felCat5.chrC1 212425437 163 + 221441202 GGATCAAAAAT----AGAGAATTAGGTGTATGGGATGGGAGGGAGATGGGTGATC-ATTCTCAGCCTCTGGTGATAGTGGCATGAGCTATGTCAACTCCCAGCTCAGGTGAACTCAAAGGCAGGAGGGTATAAGGGCAGGGACATTCCCACCTGGAAGATACTTGAGC- i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17865668 168 + 84719076 GGATCAAGAGTAGAGAGAGAATTAGGTGTACAGGAGGCAAGTGAGATGGGTCGTCTGTTCTCAGTCTTTGGTGATAGTGACAGGAGCCATGTTAACCTCCAGGTCAGGTGAACTCAAAGGCAGGAGGGTCTGAGGGCAGGGACATTCCCAACTAGGAGATACTTGAGC- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94045689 4890 + 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e calJac3.chr6 146712927 2428 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-3398.000000 s mm10.chr1_GL456221_random 53103 33 + 206961 CCCTTTTAACTTTCT--GTTTGTCAGAGGCCACTC s rn5.chr9 92364598 33 + 121549591 CCCTTTTAACCTTCT--GCTTGTCATAGGCAGCTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138928 31 - 10418462 CCACTTGAACTGCCT--GGGCTTCCTGGCC--TTC i speTri2.JH393335 C 0 C 0 s calJac3.chr6 146715355 27 + 158406734 CTTTCTTAGTTTTC--------TCATTATTTATTT i calJac3.chr6 I 2428 C 0 s felCat5.chrC1 212425600 33 + 221441202 CTCCTTGGTGGTCTT--TTTTCTCAGGATGAGTTT i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17865836 35 + 84719076 CACCTTGGTCTTCCTGGTTGTCTTGAGGTGGGTTT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94045689 4890 + 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e papHam1.scaffold15394 52314 4235 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=-1976.000000 s mm10.chr1_GL456221_random 53136 15 + 206961 TCCTGCTGCCAT-TTT- s rn5.chr9 92364631 15 + 121549591 GCCTGCAGCCCT-TTT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138959 15 - 10418462 CCGTGTGGGCTC-CTG- i speTri2.JH393335 C 0 C 0 s calJac3.chr6 146715382 16 + 158406734 TCTTGTTTTGATGCCT- i calJac3.chr6 C 0 C 0 s felCat5.chrC1 212425633 15 + 221441202 TTCTACTATGGT-TTC- i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17865871 15 + 84719076 TCCTACTATGGT-TTC- i equCab2.chr6 C 0 C 0 s choHof1.scaffold_58312 5961 16 + 9524 TCCTGCCATGCC-TCCC i choHof1.scaffold_58312 N 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94045689 4890 + 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e papHam1.scaffold15394 52314 4235 - 58077 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=1269.000000 s mm10.chr1_GL456221_random 53151 27 + 206961 CCTTGGCCAT--TCTGAGTC----AACTGAGTA s rn5.chr9 92364646 27 + 121549591 CCTTAGCCAT--TCTGAGGC----AACTGAGTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138974 30 - 10418462 TCATGG-TAT--CCTGGGGTTGAACATGGAGTC i speTri2.JH393335 C 0 T 13533 s calJac3.chr6 146715398 29 + 158406734 CCTTGACCATAAATCAAGGT----ATCTGAGGG i calJac3.chr6 C 0 I 5 s felCat5.chrC1 212425648 29 + 221441202 CATTGGTCATATGCCGGATT----CGCTAATGG i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17865886 29 + 84719076 CATTGGTCATACATTGGATC----CTCTAAGGG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94045689 4890 + 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e papHam1.scaffold15394 52314 4235 - 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=1365.000000 s mm10.chr1_GL456221_random 53178 1 + 206961 A s rn5.chr9 92364673 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4125471 1 - 10418462 A i speTri2.JH393335 T 13533 C 0 s calJac3.chr6 146715432 1 + 158406734 A i calJac3.chr6 I 5 C 0 s felCat5.chrC1 212425677 1 + 221441202 A i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17865915 1 + 84719076 A i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94045689 4890 + 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e hg19.chr2 231112496 3186 + 243199373 I e papHam1.scaffold15394 52314 4235 - 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=7926.000000 s mm10.chr1_GL456221_random 53179 4 + 206961 TTGT s rn5.chr9 92364674 4 + 121549591 TTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4125472 4 - 10418462 TTTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115682 4 + 243199373 TTTC i hg19.chr2 I 3186 C 0 s nomLeu2.GL397366 3645607 4 + 6458163 TTTC i nomLeu2.GL397366 I 3170 C 0 s rheMac3.chr12 94050579 4 + 106825570 TTTC i rheMac3.chr12 I 4890 C 0 s calJac3.chr6 146715433 4 + 158406734 TTCC i calJac3.chr6 C 0 C 0 s felCat5.chrC1 212425678 4 + 221441202 TTTT i felCat5.chrC1 C 0 I 5 s equCab2.chr6 17865916 4 + 84719076 TTTC i equCab2.chr6 C 0 I 5 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26040939 2250 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e papHam1.scaffold15394 52314 4235 - 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=83076.000000 s mm10.chr1_GL456221_random 53183 42 + 206961 TTCCTACAGAGGGAAGTAGTTCTTGTGAACAAACGTGTGATG s rn5.chr9 92364678 42 + 121549591 TTCCTACAGAGGGAAGGAGTTCTCCTGAACAAATGTGTGATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4125476 42 - 10418462 TTTCTGCAGAGGGAGGCAATGCCTATGTGGATATGCATGAGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115686 42 + 243199373 TTTCTGCAGAGGGCAGTGATGACTGTTCAGAAATGTGTGATG i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3645611 42 + 6458163 TTTCTGCAGAGGGCAGTGATGACTGTTCGGAAATGTGTGATG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050583 42 + 106825570 TTTCTGCAGAGGGCAGTGATGACTGTTCGCAAATGTGTGATG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146715437 42 + 158406734 TTTCTGCAGAGAACAGCAATGCCTGTCACAAAACGTGTGCTG i calJac3.chr6 C 0 C 0 s felCat5.chrC1 212425687 42 + 221441202 ATTCAACAGACAGTAGCAGTGACTGTTTAGAGATGTATTATG i felCat5.chrC1 I 5 C 0 s equCab2.chr6 17865925 42 + 84719076 ATTCAGCAGAAGGCAACAGTGCCTGTTCAGAAATGTGTGACG i equCab2.chr6 I 5 C 0 s myoLuc2.GL429770 26043189 42 + 30916457 TTTCTGCAGTGGACAACAATGCCTCTTGGGAGCCCTGTGATG i myoLuc2.GL429770 I 2250 I 719 e pteVam1.scaffold_12135 42612 29661 + 44403 T e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e papHam1.scaffold15394 52314 4235 - 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=43763.000000 s mm10.chr1_GL456221_random 53225 23 + 206961 AACAAGAGCCCCAGGATGACCTG s rn5.chr9 92364720 23 + 121549591 GACAAGAGCCTCAGGACAACCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4125518 23 - 10418462 AAGAAGAACCACAGGAAGCCCCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115728 23 + 243199373 GAGAAGAGCCCCAGGAAGCCTCT i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3645653 23 + 6458163 GAGAAGAGCCCCAGGAAGCCTCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050625 23 + 106825570 GAGAAGAGCCCCAGGAAGCCTCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146715479 23 + 158406734 TAGCAGTGCCTCAGGAAGCCTTG i calJac3.chr6 C 0 C 0 s felCat5.chrC1 212425729 23 + 221441202 AAGAAGACCCCCAGGAAGACTGG i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17865967 23 + 84719076 AAGAAGAGCTCCAGGAAGCCTTG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e papHam1.scaffold15394 52314 4235 - 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107253 628 + 176633 I a score=33213.000000 s mm10.chr1_GL456221_random 53248 30 + 206961 CCTTCATCCCTGAGACAAGAAGCAGGT---GAG s rn5.chr9 92364743 30 + 121549591 CCCTCCTCCCTGAGATGTGAAGCAGGT---GAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4125541 33 - 10418462 TGCTCCTCCCCAGGACATGCACCAGGTAAGGAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115751 30 + 243199373 AGCTCCCTAGCAAGATGTGGGTCAGGT---AAA i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3645676 30 + 6458163 AGCTCCCTAGCGAGACGTGGGTCAGGT---AAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050648 30 + 106825570 AGCTCCCTAGCAAGATGTGGGTCAGGT---AAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146715502 30 + 158406734 AGCTCCTCGCCGAAGTGTGGGCCAGGT---AAG i calJac3.chr6 C 0 C 0 s micMur1.scaffold_3075 107881 24 + 176633 AGGTTACCACC-AGAAGTGGGCCAG-------- i micMur1.scaffold_3075 I 628 T 557 s felCat5.chrC1 212425752 30 + 221441202 AGCTCACCACCAGAAAGCGAATCATGT---AAG i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17865990 30 + 84719076 AGCCCACCACCAGAAAGTGGACCAGAT---AAG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e papHam1.scaffold15394 52314 4235 - 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I a score=9997.000000 s mm10.chr1_GL456221_random 53278 6 + 206961 TGAGGG s rn5.chr9 92364773 6 + 121549591 TGAGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4125574 6 - 10418462 GAAGCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115781 6 + 243199373 GAAGGG i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3645706 6 + 6458163 GAAGGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050678 6 + 106825570 GAAGGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146715532 6 + 158406734 GAGGGG i calJac3.chr6 C 0 C 0 s felCat5.chrC1 212425782 6 + 221441202 GAAGGG i felCat5.chrC1 C 0 I 472 s equCab2.chr6 17866020 6 + 84719076 GGAGGT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e papHam1.scaffold15394 52314 4235 - 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=43390.000000 s mm10.chr1_GL456221_random 53284 70 + 206961 GAG-----CACGGTGTGGTCTGCAGGG----TTGTGGAGGCTGAATTTTGAGCTGGGGTTTCCTG-CTGTGTTTGCTCTG s rn5.chr9 92364779 74 + 121549591 GAG-----CACTGTGTGCTCTGCAGGGTTCTTTCTGGAGGCTGAATTCTGAACTGGGGTTTCTTG-CTGTGTTTGCTCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4125580 64 - 10418462 GAT-----CCAGTCCTGGGTTGCAGGG-----TGGGGAGGGCCAAC-----ACAGGCGTTTGCTG-TTGGCTTCATGCTG i speTri2.JH393335 C 0 I 13538 s hg19.chr2 231115787 77 + 243199373 GAGGATTTCTGGCCCTGGGCTGCAGAG---TGTCAGGAGGTTGAATTTGGAGCTTGTGTTTCCTGATTGTCTTTCCTCCA i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3645712 77 + 6458163 GGGCATTTCTGGCCCTGGGCTGCAGAG---TGTCAGGAGATTGAATTTGGAGCTCGTGTTTCCTGATTGACTTTCCTCTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050684 76 + 106825570 GAGGATTTCTGGCCCTGGGCTGCAGAG---TGTCAGGAGGTTGAATTTGGAGCTTGTGTTTCCTG-TTGACTTTCCTCTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146715538 77 + 158406734 AAGACTTGCTCTCCCTGACCTGCTGGG---TGTCAGGAGGTGGAATTCAGAGCTGGTGTTTCCTGCTGCATTTTAATGTG i calJac3.chr6 C 0 C 0 s equCab2.chr6 17866026 46 + 84719076 AAGGATT-----GTCTTGGCTGCAGGC-----------------------------TGTTTCTTGATGGATTTTACTCTG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=7897.000000 s mm10.chr1_GL456221_random 53354 22 + 206961 TATGCACATCACCATGAAGAGA s rn5.chr9 92364853 21 + 121549591 TTAAAACATCAAAA-GAACACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139182 19 - 10418462 AATGTGCTTCATGATGAA---A i speTri2.JH393335 I 13538 C 0 s hg19.chr2 231115864 22 + 243199373 AGTATACTTCACAGTGAAAGAA i hg19.chr2 C 0 I 61 s nomLeu2.GL397366 3645789 22 + 6458163 TGTATAGCTCACAGTGAAAGGA i nomLeu2.GL397366 C 0 I 1037 s rheMac3.chr12 94050760 22 + 106825570 CGTATACCTCACAGTGAAAGGA i rheMac3.chr12 C 0 I 9 s calJac3.chr6 146715615 22 + 158406734 AGCACATTCCACAGTCAAAAGA i calJac3.chr6 C 0 I 14524 s equCab2.chr6 17866072 19 + 84719076 AGCATATTCTACAATGAAA--- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-10735.000000 s mm10.chr1_GL456221_random 53376 32 + 206961 GGGTCATGCACTGACT--------------GTTCTTTT------------ATTTGCCT s rn5.chr9 92364874 15 + 121549591 TGGCCA-------------------------------T------------ATTTGCCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139201 27 - 10418462 TGATCC-----TGTTA--------------CTCTTCAC------------ATTTCCCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115947 49 + 243199373 GAATCT-----TGATA----TAGAAGTCTGTGTTTAACGGAATGGGTTTTATTGTTTG i hg19.chr2 I 61 I 3 s rheMac3.chr12 94050791 25 + 106825570 --ATCC-----TGAGA--------------TTTTTCAC------------ATTTTCTG i rheMac3.chr12 I 9 I 3 s equCab2.chr6 17866091 40 + 84719076 -GGTCC-----AGTTAATTCTCACATATAATTTTTCAC------------ATTTATCT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3645811 1037 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e papHam1.scaffold15394 52314 4235 - 58077 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-136.000000 s mm10.chr1_GL456221_random 53408 7 + 206961 ATGGCAT s rn5.chr9 92364889 7 + 121549591 ATGGCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139228 7 - 10418462 TTGGCCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115999 6 + 243199373 -ATATGT i hg19.chr2 I 3 I 1 s rheMac3.chr12 94050819 6 + 106825570 -ATGGAT i rheMac3.chr12 I 3 I 2 s papHam1.scaffold15394 56549 7 - 58077 AAAGTAT i papHam1.scaffold15394 I 4235 N 0 s equCab2.chr6 17866131 6 + 84719076 -TGGCCC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3645811 1037 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=11728.000000 s mm10.chr1_GL456221_random 53415 17 + 206961 TCTGGGTAATTTCAGGG s rn5.chr9 92364896 17 + 121549591 TCTGGGAAATTTCAGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139235 17 - 10418462 TTTGGGGAAATTCAGGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116006 17 + 243199373 TTTAGATAATCACGTGG i hg19.chr2 I 1 C 0 s rheMac3.chr12 94050827 17 + 106825570 TTTGGGAAATCCAGGGA i rheMac3.chr12 I 2 C 0 s equCab2.chr6 17866137 17 + 84719076 TTTGGGGAAATTCAGGG i equCab2.chr6 C 0 I 220 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3645811 1037 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-6266.000000 s mm10.chr1_GL456221_random 53432 5 + 206961 TGG-T-A s rn5.chr9 92364913 6 + 121549591 AGGAA-A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139252 5 - 10418462 AGA-C-A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116023 5 + 243199373 TAG-TT- i hg19.chr2 C 0 C 0 s rheMac3.chr12 94050844 4 + 106825570 GGA-A-- i rheMac3.chr12 C 0 I 248 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3645811 1037 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=226.000000 s mm10.chr1_GL456221_random 53437 6 + 206961 AAAATT s rn5.chr9 92364919 6 + 121549591 AAAATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139257 6 - 10418462 AGAAAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116028 5 + 243199373 GGA-TT i hg19.chr2 C 0 I 28 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94050848 248 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3645811 1037 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2205.000000 s mm10.chr1_GL456221_random 53443 8 + 206961 CTTGAGAA s rn5.chr9 92364925 8 + 121549591 CTTGAGAA i rn5.chr9 C 0 I 2992 s speTri2.JH393335 4139263 8 - 10418462 CTCGAGAA i speTri2.JH393335 C 0 I 4 s hg19.chr2 231116061 8 + 243199373 CTTCATAT i hg19.chr2 I 28 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94050848 248 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3645811 1037 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-2431.000000 s mm10.chr1_GL456221_random 53451 21 + 206961 ------------TATCATGAAAG------AATATAATT------T s speTri2.JH393335 4139275 27 - 10418462 ------------TGTGATTAAGG------AGTCTTTTTGTTTGTT i speTri2.JH393335 I 4 C 0 s hg19.chr2 231116069 37 + 243199373 TCTCATGCCTATTAATACTGAAGCATTAAAATATTTT-------- i hg19.chr2 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94050848 248 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3645811 1037 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 92364933 2992 + 121549591 I a score=-12895.000000 s mm10.chr1_GL456221_random 53472 26 + 206961 -----ATTAGGT----------CCTCACAA----------------------------------------------------------------------------------------------------GT-CACTT---TTTT s rn5.chr9 92367925 120 + 121549591 -----ATTAGGT----------GCTCACAggtcactttcttttttcttttttttctttttcttttttttttggggggggg------gaggtggggaccgaacccagggccttgcgcttgctaggcCACAGGT-CACTT---TCAT i rn5.chr9 I 2992 C 0 s speTri2.JH393335 4139302 30 - 10418462 -----ATTAGGT----------ATTGGCAG----------------------------------------------------------------------------------------------------ATGCACTTAAATTCG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116106 71 + 243199373 ACTGAATAAGatctcctgataccctcacaa-----------------------------------aaccttaagatggggccagacaaactgggta----------------------------------at-cctat---ttt- i hg19.chr2 C 0 I 8 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94050848 248 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3645811 1037 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=10914.000000 s mm10.chr1_GL456221_random 53498 91 + 206961 AGGAATCTGC------------T-GGGTGGGAGAACACT-CGTTGCTTTTGTCTTTTCACAGTCACTAAGGTCGTAATATATTGAAACTATAGGACAATTTGGTG s rn5.chr9 92368045 91 + 121549591 AGGAATCTGA------------T-GGGTGGGAGAACACT-CTTGCCTTTGACTTTTCCACAGTCACTAAGGCCGATATATATTGAAACTCTAGGACAATTTCTTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139332 88 - 10418462 AAAAATACTA--------------GGATAAGAGAATGCTGTTTTGCCTTCATCTTTTCACCACTATTAGTATTATTAT---TTGAATTCAGATAACAATTTATGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116185 94 + 243199373 agaaataaaggtcagaATATGCTAGGAGGAAAAAATGCT-CTTTGCCTTTAT-TTTTCTTCACTATCAATAGTATTAC---TTGAATT----TAAAATTCTAT-- i hg19.chr2 I 8 C 0 s rheMac3.chr12 94051096 84 + 106825570 agaaaTACAG------------TAGGAAGAAGCAATGCTATTTTGTCTTTAT-TTTTCATAGCTATCAATACTATTAT---TTGAATTCATATAAAATTT----- i rheMac3.chr12 I 248 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3645811 1037 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=81217.000000 s mm10.chr1_GL456221_random 53589 202 + 206961 TCCTA---ATTTCTTGATCTCCATGGAAACCAAGTAA----CGT-------------TGATTAATCATTTTTTTCCTTATCTTTTTTCCAAGAACCTGTCAAAATTCTT--AAAGGGAACTATTGTATCATTTGTCTGATACAATTCA------------ATAAAACCCAAAACTATTT--GACCCATATACTTCA-TGTTAT-CTGGACCATATAC---TTTCTATGCATTCTTTGATACAT s rn5.chr9 92368136 189 + 121549591 CTCTA---ATTTCTGGATCTCCATGGAAACCAAGTAA----TGTAGTATTCCTATACTGACTAATCATTTTTCT-----TATTTTTGCCACAAACCTGCCAAAAATGTTTAAAGAGGAACTACTGTATCATTCGTTTGATGCAATTCA------------TTAAAACCTAAAGTTATTT--GACCCACATATTT----------------------------TCCATGCATCCTTTGATACAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139420 236 - 10418462 TCCCATTCACTCCTTATCTTCTATGGAAATTAAAAAAAAAGCTTAGCATTTCTCTGCTGGTTGATAATTTTTTT----ACAGTTTTGTCACAAACTTGACAAAG-CCTTCAAAGAAACACTAATGTAGTATCTAATTGATAGAATTTAGATGAGCTATTTATAAAAACAGATTCTGTTTTGGACCAGTGTTCTTCC-TGTGCCATTGGATTACACACTGTTTTTTCAGTGTGCTTCAAAAT-T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116279 227 + 243199373 -TCT----CACTCActttttctatgggaatgaaaaag----cttatcatccctctgctggtagatactttttat------cattttattacaaacttgacaaag-ccttcaaagaaatggtatcctaccctctaattgacagaattcagatgatctctttatgagactaaatgctatttttgaccaatactcttcattatgttattggatcatGCAGTATGTTTTTAGAGGACTCTGATAAGT i hg19.chr2 C 0 I 5117 s nomLeu2.GL397366 3646848 229 + 6458163 TTCTA---TTCTCGCTCCCTCTATGGAAATAAAAAAG----AGTATCATTCCTCTGCTGGTAGATATTTTTTAT------GATTTTTTCACAAACTTGACAAAG-CCTTCAGTGTAACGGTATTCTACCATCTAATTGGCAGAACTTAGGTCAACTATTTATGAGACTAAATGGTATTTTTGACCAGTACTCTCCATTATGTCGTTGGATCATGCAGTGTTTTTTCAGAGTACTCTGAGAAGT i nomLeu2.GL397366 I 1037 C 0 s rheMac3.chr12 94051180 225 + 106825570 --CTA---TTCTCACTCCCTCTATGGAAATAAAAAAG----AGTGTCATTCCTCTGCTGGTAGATACTGTTAAT------CACTTTTTCACAAACTTGACAAAG-CCTTCAGTGTAATGGTATTCTACCATCTAACTGGCAGAATTTAGATCAACTATTTATGAGACTAAATGCTGTTTTTGACCAGTACTCCCCATTTTGTCATTGGATCATGCAGTGTTTTTTCAGAGTACTCTGATAA-- i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=266321.000000 s mm10.chr1_GL456221_random 53791 528 + 206961 ATGTCATCCCTTCATTCCTAAAGCTCTTAAGACTTTGTCAGGG-----GAAATTGTTACAAATTTAAGGCTCTAGGTACATA-GAAGTGAATAAGATGCTGGCATGTTTCAGAA--CTTGAAAAGGACAAGGAGATCAGAGATCAAGTTTCCAGATGATTCAACATGGGCTCCATGTTCTCTGAGACAGAT--------GGTTAGGTTCTTGTGGTCTGAACCCAACATGGACGTTCAA-GGGTCTTCTGACACTTAAGGGAGCCTGCAAGGGCCCAGTGTAAAGAGG-TTTTACTTACCAAAT-AGGAATGCTTAGGAAGGGAAGAAGAAGAAGAAAAAAATATCTCAGAGAATTAGAAAGCATGTGAATGTAGAATGTAGTATTACATAAGAGTGGGGAGCCCCAGAAGAA--GAGCTAGGAAATATTAACACAGAGGCCA-TGT-AAAATGTAGTACGTA---------CTACAGAGGTAAAGGTGGATGATGAAGAAGACAGCAGATTCCAGGGAGAGAAAATC--TAATGCTAGCGAGAGGTGCAAAGACCTTCCC---------------A s rn5.chr9 92368325 517 + 121549591 ATGTTATCCCTTCATTCCTAAAACTCTTAAGACTCTGTCAGGG-----GAAATTGTTACAAGTTTAAGGCTCTAGGTACATAAGAAATGAATAAGATTCTGGCATGTTTCAGAA--TCTTAAAATGATAAGGAGAACAGAGGTCAAGCTTCCAGATGGTTGGACATGGGCTCTAGGATCTCTGAAGCTGGT--------AGTTAGGTTCTTGTGGTCTGAACCCAA-ATGAAAGTTCAA-AGGTCTTTTAATACTCAAGGGAGCTTGCAAGGGCCCAGTGGAAAGAGG-TTTTATTTACCAAAT-AGGAATGCTTAGGGCGAGAAGATGAA-------AAAATATCCCAGAGAATTAGAAAGTGTGTGAATGCAG-------CGCTACATGCGATAGAAGAGCCCCAGACGGATAGAATTCGGAAATATTAACACAGAGGCAAATGT-AAAATGTAGTGCATA---------CTGCAGAGGTAAAGACAGGTGACCAAGAAGACAGCAAATGCCAGGGAGAGAAAAGC--TAACGATAGCGAGAGGCACAAAGGCCTTCCC---------------A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139656 515 - 10418462 ACGTTCTTCTTCCATCCTCAAAAACTTTAAGACACAGGCAGGGA----GATGTTGCTACTGTTTTGAGGAACTAG--AAATAAGATGTATATAAGATGCAAGGAAAG---AGAAGTCCCACGAAAGAAAAGCAGAGTGGAGA-----------------TGCACATGGGCTTCAGGTTCTGAGAAGCTGGCATG----AGGTTGGG---CCATGTTCAATGTCCAAAGCAGAAGTCCAAGGGGCCTTTGGGTACCCA--GAAATCCACTAGGATTCCATGGACAGAGA-TTTTATTTAGCAAAT-AAGAATGCTTAGGGAGAGAAGAGGGG-------GGAA-ATCACAGAAAAT--------ATGTGAATGTAATC-----TTCCATATGAGATAGGAGATACCCAGAAGAGTAGAGCCTGAAGAGGTGAACACAGAGGCAA-TGTGAAAAAGTAG-ACACAGAGAATCACCGAAGGAGAAAAAGGCAGATAACCATGGAGACTGGAAATGTCAGGGAGAAGATCCA--GAAAGTCAAGGAGAAGCACGGAGGCCCTTTATGAGGTGTAGCAATGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231121623 522 + 243199373 gtgttataattttactcacaaaaacctcaagacttagatagggaaggtgctgttattgctgttttaaggagccagaaacaca-gaaatgcatgtgacACGGGTGTTTGATAAGA--CCCAAGAAAAAAGAA-AGAGCAGAGACCAGTGTCCTGGATGACTCCTTACAGGCTTTCAGTTCTATGAGGTGGGCATGGGTTGGGGTGGGGTCTCATAGTCTGAGTCCAATGTGGATGCCCAAAGGGTTTTTAGGAATCCAAGAGACTCTACCAGGGTTCAATGGAAAGAGACTTTTATCTAACAAATAAAGAAAGATTAGGGAGAGATAAGGAA-------ACATTATC---AAGAGTTGGAAAATACTTGAATGTAATC-----TACGATACGAGATAGGAGATATCCAGAAAAATAGAGCCAGAAAAGAGAAACAGAGAGGCAA-TAT-GAAAAGTAT-ATGTAGCACATCACTGAAGGAGGAAGAGACAG----TAAGGGAGA--GGAGATGTTAAGAAGAGAAAGTCCAGAAAGCCGAAAAGAACCATA--------------------------- i hg19.chr2 I 5117 C 0 s nomLeu2.GL397366 3647077 520 + 6458163 --GTTATAATTTTACCCACAAAAACCTCAAGACTTAGATAGGGAAGGTGCTGTTATTGCTGTTTTAAGGAGCCAGAAACATA-GACGTGCATGTGACACGGGTGTTTGATAAGA--CCAAAGAAAAAAGAA-AGAGCAGAGACCAGTGTCCTGGGTGACTCCTTACAGGCTTTCAGTTCTGTGAGGTGGGCATGGGTTGGGGTGGGGTCCCATAGTCTGAGTCCAGTGTGGATGCCCAAAGGGTTTTTAGGAATCCAAGAGACTCTACCAGGGCGCAATGGAAAGATACTTTTATTTAACAAATAAAGAAAGATTAGGGAGAGATAAGGAA-------ACATTATC---AAGAGTTGGAAAATACTTGAATGTAATC-----TACGATACGAGATAGGAGATATCCAGAAAAATAGAACCAGAAAAGAGAAACAGAGAGGCAA-TAT-GAAAAGTAT-ATGTAGCACATCACTGAAGGAGGAAGAGACAG----TAAGGGAGA--GGAGATGTTAAGAAGAGAAAGTCCAGAAAGCCGAAAAGAACCACA--------------------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94051405 521 + 106825570 GTGTTATAATTTTACCCACAAAATCCTCAAGACTTAGATAGGGAAGGTGCTGTTATTGCTGTGTTGAGGAGCCAGAAACACA-GAAGTGCATGTGACACGGGTGTTTGATGAGA--CTCAAGAAAAAAGAA-AGAGCAGAGACCAGTGTCCTGGATGACTCCTTACAGGCTTTCAGTTCTATGA-GTGGGCATGGGTTGGGGTGGGGTCCCATAGTCTGAGTCCAGTGTGGATGCCCAAAGGGTTTTTAGGAATCCAAGAGACTCTCCCAGGGTTCAATGGAAAGATACTCTTATTTAACAAATAAAGAAAGATTAGGGAGAGATGAGGAA-------ACATTATC---AAGAGTTGGAAAATACTTGAATGTAATC-----TACAATACGAGATAGGAGATATCCAGAAAAATAGGGCCAGAAAAGTGAAACAGGGAGGCAA-TAT-GAAAAGCAT-ATGTAGCACATCACTGAAGGAGGAAAAAACAG----TAAGGGAGA--GGAGATGTTAAGAAGAGAAAGTCCAGAAAGCCAGAAAGAACCACA--------------------------- i rheMac3.chr12 C 0 I 389 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=153.000000 s mm10.chr1_GL456221_random 54319 10 + 206961 AGTACCATTT s rn5.chr9 92368842 10 + 121549591 AGTTCCATTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140171 10 - 10418462 AAATGTGTAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122145 10 + 243199373 GATGCCGTCA i hg19.chr2 C 0 I 354 s nomLeu2.GL397366 3647597 10 + 6458163 GATGCCTTCA i nomLeu2.GL397366 C 0 I 5 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94051926 389 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1101.000000 s mm10.chr1_GL456221_random 54329 5 + 206961 TTAAC s rn5.chr9 92368852 5 + 121549591 TCAGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140181 5 - 10418462 TCAAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122509 4 + 243199373 -CCAC i hg19.chr2 I 354 I 1 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94051926 389 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3647607 5 + 6458163 I e gorGor3.chr2B 119445519 8756 + 131632457 I e panTro4.chr2B 235493837 6468 + 247518478 I e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1742.000000 s mm10.chr1_GL456221_random 54334 11 + 206961 TGATA--CTAAAC s rn5.chr9 92368857 11 + 121549591 TGGTA--TTAACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140186 13 - 10418462 CAAAGGCTGAACT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122514 11 + 243199373 TAATA--TCAAAC i hg19.chr2 I 1 I 9 s panTro4.chr2B 235500305 11 + 247518478 TAATA--TCAAAC i panTro4.chr2B I 6468 I 9 s gorGor3.chr2B 119454275 11 + 131632457 TAATA--TCAAAC i gorGor3.chr2B I 8756 I 9 s nomLeu2.GL397366 3647612 5 + 6458163 TAATA-------- i nomLeu2.GL397366 I 5 I 6 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94051926 389 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146715637 14524 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=13277.000000 s mm10.chr1_GL456221_random 54345 8 + 206961 AAGTTATT s rn5.chr9 92368868 8 + 121549591 AAGTTGTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140199 8 - 10418462 CATTGTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122534 8 + 243199373 AATTTATT i hg19.chr2 I 9 I 1 s panTro4.chr2B 235500325 8 + 247518478 AATTTATT i panTro4.chr2B I 9 I 1 s gorGor3.chr2B 119454295 8 + 131632457 AATTTATT i gorGor3.chr2B I 9 I 1 s nomLeu2.GL397366 3647623 4 + 6458163 ----TATC i nomLeu2.GL397366 I 6 I 368 s rheMac3.chr12 94052315 8 + 106825570 AATTTATT i rheMac3.chr12 I 389 I 1 s calJac3.chr6 146730161 8 + 158406734 AATTTATT i calJac3.chr6 I 14524 I 1 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=461337.000000 s mm10.chr1_GL456221_random 54353 290 + 206961 TTAAACTAATGAAGAACTGTGCTTGTGAGTCCA--ATTCTCTCAGAAT------------TATAGAGGATATGTGCA-AGAATTGAACTGAGCCAATTTTGTGGATCTTCATAAATG-GCTATGTTTCTGTGTGTGTGTGTGTGGGGGCTGCTGGTTGATTTCTAGTAGG-------CAAGTAGAAAGTGG-CTGTTCCTGATTGGTGGCTGTTCAGAAGTATGACTATACAAATCATCAGTTGGCTTGTAGAAG---TTCAT-TGCTGGATGATTAATCATTAAAC--TTAATGATTAATTAGGATTATTCTGGTTGCT s rn5.chr9 92368876 272 + 121549591 TTAAACTCAGGAAGAGCTATGTTTGTGAGTCCC--ATTCTCTTAGAATGGACACTGGAGCTGTAGAGTATATATGCA-ATCATCGAACTGAGCAA--TTGGTGAAGCTTGATAAGGG-GCTGTG---------------------GAGGGACTGGTTGATTTCTAGTGGG-------CAAGTAGAGTCTGG-CTGTTCCTGATTGGTGGCGGTTCAGAAGCATGACTGTATGAATCATTGGTTGGCTTGTACAAG---CCCATCTGCTGGA--------CTTTAAGC--TCAATGATTAATTAGGATTATTCTGGTTGCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140207 279 - 10418462 TTTAACCGAGGAAGAATTGTGCTTATGAGTCCA--GTT-TCTCTAAAT-AGCACTCCTACTGTAGAATGTTTGGGGAGAGTGTGGAGCTCAGGGA--TTGGAGGATCTTTGGAAATG-GCCTTGCA-------------------TGGGGACTAGCTGACCCTTAGTGAGAGCAGGCTAACGGGAGCATGGCCCCTTCATCTCTGCTGACTG-TCAGAATCTTGGGGATGTG-ATGATGGGCTGGCTTTCAGAGG---CCTGTGTCCTGGA--------CA-GAAGCTATCATTGACTAATTGGGATGATTCTGGCT-TT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122543 266 + 243199373 TTCAGTTAAGGGATAGTTGTGCTTGTGGGT-CA--GTT-TCTCTGAAC-------------AGAGAACGTTTGTGGA-AGTGTGGATCTCGGTGA--CTGGCGG-CCTTCAAAAGTGAGATTTGT--------------------TAGTGGTTAGCTGACCTTTAGTGAAAGCAGGGTCACTGGAGTGTGG-CTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAATGGTTGGCTGGCTTTCAGAGG---CCTGTGTACTGGC--------CA-GAAGCTATTGTTGATTAATTGGGATGATTCTGGTTGTT i hg19.chr2 I 1 C 0 s panTro4.chr2B 235500334 266 + 247518478 TTCAATTAAGGGATAGTTGTGCTTGTGGGT-CA--GTT-TCTCTGAAC-------------AGAGAACGTTTGTGGA-AGTGTGGATCTCGGTGA--CTGGCGG-CCTTCAGAAGTGAGATTTGT--------------------TAGTGGTTAGCTGACCTTTAGTGAAAGCAGGGTCACTGGAGTGTGG-CTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAATGGTTGGCTGGCTTTCAGAGG---CCTGTGTACTGGC--------CA-GAAGCTATTGTTGATTAATTGGGATGATTCTGGTTGTT i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119454304 266 + 131632457 TTCAGTTAAGGGATAGTTGTGCTTGTGGGT-CA--GTT-TCTCTGAAC-------------AGAGAACGTTTGTGGA-AGTGTGGATCTCGGTGA--CTGGCGG-CCTTCAGAAGTGAGATTTGT--------------------TAGTGGTTAGCTGACCTTTAGTGAAAGCAGGGTCACTGGAGTGTGG-CTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAATGGTTGGCTGGCTTTCAGAGG---CCTGTGTACTGGC--------CA-GAAGCTATTGTTGATTAATTGGGATGATTCTGGTTGTT i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3647995 266 + 6458163 TTCAATTAAGGGACAGTTGCGCTTGTGGGT-CA--GTT-TCTCTGAAC-------------AGAGAACGTTTGTGGA-AGTGTGGATCTTGGTGA--TTGGCAG-CCTTCAGAAGTGAGATTTGT--------------------TAGTGGTTAGCTGACCTTTAGTGAAAGCAGGGTCACTGGAGTGTGG-CTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAGTGGTTGGCTGGCTTTCAGAGG---CCTATGTACTGGC--------CA-GAAGCTATTGTTGATTAATTGGAATGATTCTGATTGTT i nomLeu2.GL397366 I 368 C 0 s rheMac3.chr12 94052324 265 + 106825570 TTCAATTAAGGGACAGTTGCACTTGTGGGT-CA--GTT-TCTCTGACC-------------AGAGAACGTTTGTGGA-AGTGTGGATCTTGGTGA--CTGGTGG-CCTTCAGAAGTGAGATTTGT--------------------TAGTGGTTAGCTGACTTTTAGTGAAAGCA-GGTCACTGGAGTGTGG-CTGTTACTAACTGGCTGACTTTCAGAAGCATGGGGAAGTGAATAGTTGGCTGGCTTTCAGAGG---CCTGTGTACTGGC--------CA-GAAGCTGTTGTTGATTAATTGGGATGATTCTGGTTGTT i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146730170 270 + 158406734 TTCAATTAAGGGACAGTTGTGCTTGTGGGC-CACTGTT-TCTCTGAAC-------------AGAGAATGTTTGTGGA-AGTGTGGATCTCAGTGA--TTGGCAG-CCTTCAGAAGTGAGATTTGT--------------------TAGTGGTTAGTTGACTTTTAGTGAAAGCAGGGTCACTGCAGTGTGG-CTGTCACTGATTGGGTGAGTTTCAGAGGCATGGGGAAGTGAATAGTTTGCTGGCTTTCAGAGGCCACCTGTGTACTGGC--------CA-GAAGCTATCATTGATTAATTGGGACGATTCTGGTTGT- i calJac3.chr6 I 1 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=64636.000000 s mm10.chr1_GL456221_random 54643 44 + 206961 GCTTCTTTATAGAATCATAGATTAATGTATTTCCTTAGGA-GTAT s rn5.chr9 92369148 44 + 121549591 GCTTCTTTATATAATCAAGGAATAATGCATTTCCCTAGGA-GTAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140486 45 - 10418462 ATTTGTTCCTGTGGTCAAAGAATAATGAGTTTTCCTAGGACCTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122809 43 + 243199373 -ATTGACCATATGGCCAAACAATAATGAGTTTTCCTAGAA-GTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235500600 43 + 247518478 -ATTGACCATATGGCCAAACAATAATGAGTTTTCCTAGAA-GTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454570 43 + 131632457 -ACTGACCATATGGCCAAACAATAATGAGTTTTCCTAGAA-GTGT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94052589 43 + 106825570 -ATTGACCATATGGCCAAACAATAATGAGTTTTCATAGAA-GTGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146730440 44 + 158406734 AATTGTCCATATGGCTAAACAATAATGAGTTTTCCTAGAA-GTGT i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3648261 0 + 6458163 C e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=15960.000000 s mm10.chr1_GL456221_random 54687 11 + 206961 AGGAACTTTTA s rn5.chr9 92369192 11 + 121549591 AGGAACTTTTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140531 11 - 10418462 AGGAACTTTGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122852 11 + 243199373 AGCAACTTTCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235500643 11 + 247518478 AGCAACTTTCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454613 11 + 131632457 AGCAACTTTCA i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94052632 11 + 106825570 AGGGACTTTCA i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3648261 0 + 6458163 C e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=422.000000 s mm10.chr1_GL456221_random 54698 1 + 206961 A s rn5.chr9 92369203 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140542 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122863 1 + 243199373 A i hg19.chr2 C 0 C 0 s rheMac3.chr12 94052643 1 + 106825570 A i rheMac3.chr12 C 0 I 7448 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3648261 0 + 6458163 C e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=648.000000 s mm10.chr1_GL456221_random 54699 72 + 206961 AGAtttgatttt---------aattctgtgtatgtatgtgtgtctaagtgtggtttgtg------catgtgcatatgaggaaatcct s rn5.chr9 92369204 87 + 121549591 AAGTATTATTTTTTTATTAAAAAGTTCGTGTATGCATGTGTGTCTAAGTGTGGTttgtgtatgtacatgtgcacgtgaggaactctt i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140543 25 - 10418462 A----------------------------------------------------TCTGTT----------TCCCCATGAGGAAGTCCC i speTri2.JH393335 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3648261 0 + 6458163 C e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=7354.000000 s mm10.chr1_GL456221_random 54771 114 + 206961 agaggccaggagaggatgttgtaaccagagtagagttgcaggtggttgtgatccatctgatactggtgctgggaaccaaactaaggtcctctggaagatcaatggaagctctac s rn5.chr9 92369291 114 + 121549591 agaggccagaagagggtgtggtagtcagaatagagttacaggcagttgtggttcacctgatactggtgctgggaacctaactaagtgtctctggaagatcagtacacattcttc i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4140568 0 - 10418462 C e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3648261 0 + 6458163 C e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-1892.000000 s mm10.chr1_GL456221_random 54885 27 + 206961 acta---agccatctccccagATCCAGTAC---- s rn5.chr9 92369405 29 + 121549591 actgctgagccatctctctagTGTCGGTA----- i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3648261 27 + 6458163 ----ATTGACCATATGGCCAAA--CAGAA-GTGT i nomLeu2.GL397366 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4140568 0 - 10418462 C e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4629.000000 s mm10.chr1_GL456221_random 54912 11 + 206961 AGGAACTTTCC s rn5.chr9 92369434 10 + 121549591 -GGAAATTTCC i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3648288 11 + 6458163 AGGAACTTTCA i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146730484 11 + 158406734 AGGAACTTTCC i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4140568 0 - 10418462 C e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1365.000000 s mm10.chr1_GL456221_random 54923 1 + 206961 A s rn5.chr9 92369444 1 + 121549591 A i rn5.chr9 C 0 C 0 s panTro4.chr2B 235500654 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454624 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3648299 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146730495 1 + 158406734 A i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4140568 0 - 10418462 C e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e hg19.chr2 231122864 0 + 243199373 C e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=15252.000000 s mm10.chr1_GL456221_random 54924 13 + 206961 TTTTTGGTTTCTG s rn5.chr9 92369445 13 + 121549591 TTCTTGGTTTCTT i rn5.chr9 C 0 C 0 s hg19.chr2 231122864 13 + 243199373 TTATCAGTTTCCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235500655 13 + 247518478 TTATCAGTTTCCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454625 13 + 131632457 TTATCAGTTTCCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3648300 13 + 6458163 TGATCAGTTTCCC i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146730496 13 + 158406734 TTCTCAGTCTCCC i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4140568 0 - 10418462 C e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=207622.000000 s mm10.chr1_GL456221_random 54937 197 + 206961 TTTTGGGAAGTCCATCGTTTGAAGCTTACAAGAGAGACAATTAAGTAGTGTCTGTATTGAAAATGTCTTTTCTGTTAGAGGACACTGAATCTAAACTCCTAATCCT---ACTTCACTAAGTAAGGGTTATAGA-TCAATGGTTTGAGAGAATTGTGTCTGTGGA--TAGGGAGAGAAAAG-GGAAGTTATAGTAT----TTTAATAAA- s rn5.chr9 92369458 193 + 121549591 CCTTGTGATGGTCATCATTTGAAGCTTACAAGAGAGACAATTAAGTATTGTCTCTATTGAAAATGTCTTTTCTG--------CACTGAACTTAAACTCCTAAGCAT---ACTTCATTAAGTAAGGGTTATAGA-TCAACGGGTTGAGAGAATTGTGTCTGTGGA--TAGGGAGAGAAAAG-AGAAGTTATGatatatatttttttaaa- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140568 159 - 10418462 TTCTAAGAAGA---------------TGCAAGAAAGGCCATGAAGGTAT-----TATTGGAA---------------GAGGACACTGGATTAAAACTCCTAGGCTTCTCCCCCCACTGAGTAACAG-----GG-CTGCTGGACTGAGTG--TTCAGCCTATGGAAGAAGACAGAAAAAAG-AGAAGTCGTGATA-----TTTAGTAAT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122877 198 + 243199373 CTTTAGGAAATCTCTCATCTAAAGC-TGCAGGAGGCACCATCAAGTATTTTCCCCATCCAAGATGTCTTTTCTGGAAGAGGACCCTGGAAACAAAATCCTAGGATT-CCCCTTCACTGAGTAGGAGTTATAGAGTTGCTAGATTGAGAG--TGTTATCCTTGCA--AAGGATGACATAAGAAAAAGTAATGATG-----TTTTACAATA i hg19.chr2 C 0 I 2 s panTro4.chr2B 235500668 196 + 247518478 CTTTAGGAAATCTCTCATCTAAAGC-TGCAGGAGGCACCATCAAGTATTTTCCCCATCCAAGGTGTCTTTTCTGGAAGA--ACCCTGGAAACAAAATCCTAGGATT-CCCCTTCACTGAGTAGGAGTTATAGAGTTGCTAGACTGAGAG--TGTTATTCTTGCA--AAGGATGACATAAGAAAAAGTAATGATG-----TTTTACAATA i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119454638 198 + 131632457 CTTTAGGAAATCTCTCATCTAAAGC-TGCAGGAGGCACCATCAAGTATTTTCCCCATCCAAGATGTCTTTTCTGGAAGAGGACCCTGGAAACAAAATCCTAGGATT-CCCCTTCACTGAGTAGGAGTTATAGAGTTGCTAGATTGACAG--TGTTATCCTTGCA--AAGGATGACATAAGAAAAAGTAATGATG-----TCTTACAATA i gorGor3.chr2B C 0 I 8689 s nomLeu2.GL397366 3648313 198 + 6458163 CTTTAGGAAATCTCTCATCTAAAGC-TGCAGGAGGCACCATCAAGTATCGTCCCCATCCAAGATGTCTTTTCTGGAAGAGAACCCTGGAAACAAAATCCTAGGATT-CCCCTTTATTGAGTAGGAGTTACAGAGTTGTTAGATTAAGAG--TGTCACCCTTGCA--GAGGATGACATAAGAAAAAGTAATGATG-----TTTTACAATA i nomLeu2.GL397366 C 0 I 2 s calJac3.chr6 146730509 191 + 158406734 CTGTAGGAAACCTCTCATCTAAAGT-GGCAGGAGGCACCATCCAGCATTGTCCCCATCCAAGATGTATTTTCTGGAAGAGAACGCTG-------AATCCTAGGATT-CCCCTTCATTGAGTAGGCATTATAGAGTTGCTACATTGATAG--TTTTATCCTTGTG--GAGGATGATATAAGAAAAAGTAATGATG-----TTTAATAATA i calJac3.chr6 C 0 I 2 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-624.000000 s mm10.chr1_GL456221_random 55134 7 + 206961 -TTACTGG s rn5.chr9 92369651 7 + 121549591 -aaattGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140727 7 - 10418462 -TAgttga i speTri2.JH393335 C 0 C 0 s hg19.chr2 231123077 7 + 243199373 TTAATGG- i hg19.chr2 I 2 I 8691 s panTro4.chr2B 235500866 7 + 247518478 TTAACGG- i panTro4.chr2B I 2 C 0 s nomLeu2.GL397366 3648513 7 + 6458163 TTAATGG- i nomLeu2.GL397366 I 2 C 0 s calJac3.chr6 146730702 7 + 158406734 TTAATCG- i calJac3.chr6 I 2 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119454836 8689 + 131632457 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-2672.000000 s mm10.chr1_GL456221_random 55141 35 + 206961 TGTAATA--TAATGCTATACAATGG----------------GTTTTGATAGTA s rn5.chr9 92369658 35 + 121549591 TTTAAAA--Taatgttatacaatga----------------cttttgatagta i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140734 53 - 10418462 tcaaatgactaattccttgtggttgtagggctgaggtcacagctttgctgctg i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235500873 24 + 247518478 ----------AATGGCACACAACTG-------------------TTGAAAGTT i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3648520 24 + 6458163 ----------AATGGCAGACAACTA-------------------TTGAATGTT i nomLeu2.GL397366 C 0 I 8951 s calJac3.chr6 146730709 24 + 158406734 ----------AATAACAGACAACTG-------------------TGGAATGTT i calJac3.chr6 C 0 I 9260 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119454836 8689 + 131632457 I e hg19.chr2 231123084 8691 + 243199373 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=477.000000 s mm10.chr1_GL456221_random 55176 2 + 206961 TT s rn5.chr9 92369693 2 + 121549591 tt i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140787 2 - 10418462 gt i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235500897 2 + 247518478 TT i panTro4.chr2B C 0 I 8600 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3648544 8951 + 6458163 I e gorGor3.chr2B 119454836 8689 + 131632457 I e hg19.chr2 231123084 8691 + 243199373 I e calJac3.chr6 146730733 9260 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2451.000000 s mm10.chr1_GL456221_random 55178 27 + 206961 CTTTTCCCATCACCAACTCATCCCAGA s rn5.chr9 92369695 27 + 121549591 cttttcttctccccaactcatcccaga i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140789 27 - 10418462 tcttggccagggcttactcaacccaca i speTri2.JH393335 C 0 I 266 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3648544 8951 + 6458163 I e gorGor3.chr2B 119454836 8689 + 131632457 I e panTro4.chr2B 235500899 8600 + 247518478 I e hg19.chr2 231123084 8691 + 243199373 I e calJac3.chr6 146730733 9260 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4148.000000 s mm10.chr1_GL456221_random 55205 124 + 206961 TCCTCTCCAAATTC----------------------------------TGTCTCTTGCCTGTATTTATGTGTCTCTTGCTCTC----TCTTAAAAAATCAAAACAAAGCGAAAGAACAAAAAAAAATACTCAAAGAAGAGAAGCCTCCACCCCC----CAAAA---CCA s rn5.chr9 92369722 162 + 121549591 tACTCTCCAAATtccctctctctctctctctctctctctctctctctctctctctctcCTGTATTTGTGTGTCTCTTGCTCTTAAAATATCAAAAAAAGAAAAAAACCCAAAAGGACAAAAACAAA-------ACAAGAGAAGCCTCAACCCCCTCGCCAAAAACCCCA i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4140816 266 - 10418462 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3648544 8951 + 6458163 I e gorGor3.chr2B 119454836 8689 + 131632457 I e panTro4.chr2B 235500899 8600 + 247518478 I e hg19.chr2 231123084 8691 + 243199373 I e calJac3.chr6 146730733 9260 + 158406734 I e felCat5.chrC1 212425788 472 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3253.000000 s mm10.chr1_GL456221_random 55329 32 + 206961 CAAAGTTTCTGTGATCAACTACTCCTGAGTGT s rn5.chr9 92369884 32 + 121549591 CAAAGTTTGTGTGATCAACTACTCCTGAGTGT i rn5.chr9 C 0 C 0 s felCat5.chrC1 212426260 24 + 221441202 cacagttcctgTGATCAGGGA------AGT-- i felCat5.chrC1 I 472 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4140816 266 - 10418462 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3648544 8951 + 6458163 I e gorGor3.chr2B 119454836 8689 + 131632457 I e panTro4.chr2B 235500899 8600 + 247518478 I e hg19.chr2 231123084 8691 + 243199373 I e calJac3.chr6 146730733 9260 + 158406734 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-4681.000000 s mm10.chr1_GL456221_random 55361 52 + 206961 GGAGCCCACCCTGGATGGTG---TTGACCTACC-CAGTGGTGCTCTAG---AGCTT--GAC s rn5.chr9 92369916 43 + 121549591 GG-----------GATGGGG---TTAACATACA-CAGTGGCACTCTAG---AGCTCAAGAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141082 42 - 10418462 ggagccttcgtagaat-------tctgcctacc-aAGCAGTGTTTAA-----------CAA i speTri2.JH393335 I 266 C 0 s felCat5.chrC1 212426284 56 + 221441202 GGAGCCAAGGGGACATTGAGAACTATGCCTACCACAATGAGACTTAAGTACATTTC----- i felCat5.chrC1 C 0 I 1083 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3648544 8951 + 6458163 I e gorGor3.chr2B 119454836 8689 + 131632457 I e panTro4.chr2B 235500899 8600 + 247518478 I e hg19.chr2 231123084 8691 + 243199373 I e calJac3.chr6 146730733 9260 + 158406734 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1318.000000 s mm10.chr1_GL456221_random 55413 6 + 206961 ACCCCA s rn5.chr9 92369959 6 + 121549591 ACCCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141124 6 - 10418462 AACCCA i speTri2.JH393335 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3648544 8951 + 6458163 I e gorGor3.chr2B 119454836 8689 + 131632457 I e panTro4.chr2B 235500899 8600 + 247518478 I e hg19.chr2 231123084 8691 + 243199373 I e calJac3.chr6 146730733 9260 + 158406734 I e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=266056.000000 s mm10.chr1_GL456221_random 55419 214 + 206961 TAGAAAATAAACGTCTAGATGAGGCACTGATCTTCTCAAGCATATAACATT----------ACATTGCTCATCAAGCAAAAGTAGAACATGAAAGTACTAAGATAATGAG------CTTAGGAGAGATGGGAGAAGCTACTGTGATTGGGCTAGGCATTCCAGGGAAGGGA-CAAGGGCTTTT------------------------ATCACATCTAGTCAGGTCCTGGTG--GCTTAGAATGGTTGATTATAGA---GA s rn5.chr9 92369965 188 + 121549591 TAGAAAATAAGTGCCT------------GATCTTTTCAAGCGAGTAACATC----------ACAT-GGTCATCAAGCAGAAGTAGAGCGTGAATGTATTAAGATGATCAG------TTTAGGAGAAACAG-AGAGACTACTGTGGTTAGGCAAGGCACTTCCCAGAAGGGA-------------------------------------TCACACCTAGTCATACCCTGGTG--GCTGAGACTGATTGATTATAGA---GA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141130 245 - 10418462 GAGAAAATAACTGTCTAGATGAGCCACTGATTTCCCCAAGAGAATAATATT----------AAATGGGACATCAAATGAAAGTAGAACATAAATGTATGAAAGAAAAGAATCTGTCTTTAGATGAGGCTGAAGAGATTATAGTAAATGGATTAGGTGCCACAGGAAGTGAA-GTGTAGCTGTTCTGTTTAGTGCTTGCAGATCTTAAatcacacacagtggaggaatgccaatgttcaga----tcaactataaactgat i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131775 235 + 243199373 TAGAAAATAACTGTCCAGATAAGCCACTGATTTTCCCAAGCAAATAATATTTATCTTTATCAAGTGAGACATTAAAC-AAAGCTGAACATAAATATATTAAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGATTGTAGTAATCTGGTTAGGAGGTACAGGGAAGTGAGGTATACCTATTTTGTTTATTGCTTGCAGACCTCAAATCATCCGTAGTGTAGGTATACTAATGGTCAGG----T--------------- i hg19.chr2 I 8691 C 0 s panTro4.chr2B 235509499 235 + 247518478 TAGAAAATAACTGTCCAGATGAGCCACTGATTTTCCCAAGCAAATAATATTTATCTTTACCAAATGAGACATTAAAC-AAAGCAGAACATAAATATATTAAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGATTGTAGTAATCTGGTTAGGAGGTACAGGGAAGTGAGGTATACCTATTTTGTTTATTGCTTTCAGACCTCAAATCATCCGTAGTGTAGGTATACTAATGGTCAGG----T--------------- i panTro4.chr2B I 8600 C 0 s gorGor3.chr2B 119463525 235 + 131632457 TAGAAAATAACTGTCCAGATGAGCCACTGATTTTCCCAAGCAAATAATATTTATCTTTATCAAATGAGACATTAAAC-AAAGCTGAACATAAACATATTAAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGATTGTAGTAATCTGGTTAGGAGGTACAGGGAAGTGAGGTATACCTATTTTGTTTATTGCTTGCAGATCTCAAATCATCCGTAGTGTAGGTATACTAATGGTCAGG----T--------------- i gorGor3.chr2B I 8689 C 0 s nomLeu2.GL397366 3657495 235 + 6458163 TAGAAAATAACTGTCCAGATGAGCCATTGATTTTCCCAAGCAAATAATACTTATCTTTATTAAATGAGACATTAAAC-AAAGTTGAACATAAATATATTGAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGATTGTAGTAATCTGGTTAGGAGGGACAGGGAAGTGAGGTATACCTATTTTGTTTATGGCTTGCAGATCTCAAATCATCCATAGTGTAGGTATACTAATGTTCAGG----T--------------- i nomLeu2.GL397366 I 8951 C 0 s rheMac3.chr12 94060092 229 + 106825570 TAGAAAATAACTGTCCAGATGAGCCATTGATTTTCCCAAGCAAATAATATTTATCT------AATGAGACATTAAAC-AAAGCTGAACATAAATACATTAAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGATCGTAGTAATCCGGTTAGGAGGTACAGGGAAGTGAGGTATACCTATTTTGTTTATTGCTTGCAGATCTCAAATCATGCATAGTGTAGGTATACTAATGTTCAGG----T--------------- i rheMac3.chr12 I 7448 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146730733 9260 + 158406734 I e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3600.000000 s mm10.chr1_GL456221_random 55633 1 + 206961 C s rn5.chr9 92370153 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141375 1 - 10418462 c i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132010 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509734 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463760 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657730 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060321 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146739993 1 + 158406734 C i calJac3.chr6 I 9260 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=14636.000000 s mm10.chr1_GL456221_random 55634 10 + 206961 AAGCACAGAT s rn5.chr9 92370154 10 + 121549591 AAGCACAGGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141376 10 - 10418462 atgcatggga i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132011 10 + 243199373 AACTATACAT i hg19.chr2 C 0 I 15 s panTro4.chr2B 235509735 10 + 247518478 AACTATACAT i panTro4.chr2B C 0 I 15 s gorGor3.chr2B 119463761 10 + 131632457 AACTATACAT i gorGor3.chr2B C 0 I 15 s nomLeu2.GL397366 3657731 10 + 6458163 AACTACACAT i nomLeu2.GL397366 C 0 I 15 s rheMac3.chr12 94060322 10 + 106825570 AACTACACAT i rheMac3.chr12 C 0 I 15 s papHam1.Contig311851 3128 6 + 7937 ----ATGTGT i papHam1.Contig311851 N 0 N 0 s calJac3.chr6 146739994 10 + 158406734 AACTATACAT i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=291776.000000 s mm10.chr1_GL456221_random 55644 154 + 206961 GAATCTT---TCAGG--ACCTCTGAAATACATCTGTGACCACA-----TAATCTGGAAGTTCCATTTTCAAAA-AGATCTCAACTT--CACAGTTG-AGGGGCTTTGTCAAAGAAAGCAACATTCCCCAGAGA----ATAGTCT-------AGAATGACAAG-TACTGGTGGGGACGTGG s rn5.chr9 92370164 140 + 121549591 GAAACTT---TCAGG--ACTTCTGAAACACATCTGTGTTCGAG-----TAATCTGACAGTTCTATTTGCAACA------------T--CAAGGTTG-AGGGGCTTTGTCAAAGAAAACAATGTTCCCCAGAGA----ATAGTCT-------AGAATGACAAA-TACTAG---GGATGTGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141386 175 - 10418462 aaatttt---ttggg-aacttctaaaattagtccttgtgtatgttttttaatctgtcagtcccatttgcagaagagatctctacctagtacatctgtagggatattactaaagaaaagaaagCTATGTAGATATTTTGTAATTTTGTTCTGAAAGTAACAGT-TTCTGGTTGGGATATGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132036 162 + 243199373 gaatttt---ccagg--acttctaaaattagtccttcttctgaacctttaatctggtagttctatttgcagaatagatccctacctattacatttatagaggtTTTGTT---GAAAACAGTGTTCCTCAGATA----ATGGTCT------GAAAGTAATAGATTACTGGTTGAGATGTGG i hg19.chr2 I 15 C 0 s panTro4.chr2B 235509760 162 + 247518478 gaatttt---ccagg--acttctaaaattagtccttcttctgaacctttaatctggtagttctatttgcagaacagatccctacctattacatttatagaggtTTTGTT---GAAAACAGTGTTCCTCAGATA----ATGGTCT------GAAAGTAATAGATTACTGGTTGAGATGTGG i panTro4.chr2B I 15 C 0 s gorGor3.chr2B 119463786 162 + 131632457 gaatttt---ccagg--acttctaaaattagtccttcttctgaacctttaatctggtagttctatttgcagaatagatccctacctattacatttatagaggtTTTGTT---GAAAACAGTGTTCCTCAGATA----ATGGTCT------GAAAGTAATAGGTTACTGGTTGAGATGTGG i gorGor3.chr2B I 15 C 0 s nomLeu2.GL397366 3657756 162 + 6458163 GAATTTT---CCAGG--ACTTCTCAAATTAGTCCTTCTGCTGAACCTTTAATCTGGTAGTTCTATTTGCAGAATAGATCCCTACCTATTACATTTATAGAGGTTTTGTT---GAAAACAGTGTTCCTCAGATA----ATGGTCT------GAAAGTAATAGGTTACTGGTTGAGACGTGG i nomLeu2.GL397366 I 15 C 0 s rheMac3.chr12 94060347 162 + 106825570 gaatttt---ccagg--acttctaaaattagtccttcttctgaacctttaatctggtagttccatttgcagaatagatccctgcctattacatttatagaggttttgtt---gaaaagagtgttcctcagata----atggtct------gaaagtaacgggttactggttgagacgtgg i rheMac3.chr12 I 15 C 0 s calJac3.chr6 146740004 167 + 158406734 AAATCATGGGTCAGggaacttctaaaatcaatctttcttctgaacacttaatctggtagttccgtttgcagaataaatccctacctattacatttatagaggtTTTATT---GAAAAGAGTGTTCCTCAGATG----ATGGTCT------GAAAGTAACAGGTTCCTGGTTGAGACATGA i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 42612 29661 + 44403 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-3033.000000 s mm10.chr1_GL456221_random 55798 1 + 206961 -A s rn5.chr9 92370304 1 + 121549591 -A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141561 1 - 10418462 -G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132198 1 + 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509922 1 + 247518478 -A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463948 1 + 131632457 -A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657918 1 + 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060509 1 + 106825570 -g i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740171 1 + 158406734 -G i calJac3.chr6 C 0 C 0 s pteVam1.scaffold_9232 30040 1 + 60856 T- i pteVam1.scaffold_9232 n 29661 I 7475 e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=103475.000000 s mm10.chr1_GL456221_random 55799 50 + 206961 GCCGCTAGAGAA--CCTCCTCCCTTGTTATATAGAGCTATTTGACAAACATG s rn5.chr9 92370305 50 + 121549591 AACACTGGAGAA--CCTCCTCTCTTGTTTTATAGAGCTACTTGACAAACATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141562 50 - 10418462 AACATCTGGAGA--TTTCCCCCCTTCTTTTACAGAAGTACTTACCAAATGTG i speTri2.JH393335 C 0 I 285 s hg19.chr2 231132199 51 + 243199373 AACATTCAGTGA-TTTTTTTCTCTTCTTTTATAGACCTACTTGTCAAATGTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509923 51 + 247518478 AACATTCAGTGA-TTTTTTTCTCTTCTTTTATAGACCTACTTGTCAAATGTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463949 51 + 131632457 AACATTCAGTGA-TTTTTTTCTCTTCTTTTATAGACCTACTTGTCAAATGTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657919 51 + 6458163 AACATTCAGTGA-TTTTTTTCTCTTCTTCTATAGACCTACTTGTCAAATGTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060510 51 + 106825570 aACATTTGGTGA-CTTTTTTCTCTTCTTTTATAGATCTACTTGTCAAATGTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740172 52 + 158406734 AACATTCGGTGATTTTTTTTCTCTTCTTTGATAGATCTACTTGTCAAATGTG i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4569.000000 s mm10.chr1_GL456221_random 55849 3 + 206961 TAA s rn5.chr9 92370355 3 + 121549591 CCA i rn5.chr9 C 0 C 0 s hg19.chr2 231132250 3 + 243199373 TTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509974 3 + 247518478 TTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464000 3 + 131632457 TTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657970 3 + 6458163 TTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060561 3 + 106825570 TTA i rheMac3.chr12 C 0 I 24 s calJac3.chr6 146740224 3 + 158406734 TTA i calJac3.chr6 C 0 I 77 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4141612 285 - 10418462 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2606.000000 s mm10.chr1_GL456221_random 55852 28 + 206961 AGCCCCCGTCCTGCGCCCCCCCCCGGCA----------- s rn5.chr9 92370358 9 + 121549591 AGTCCCC-------------------CA----------- i rn5.chr9 C 0 C 0 s hg19.chr2 231132253 24 + 243199373 ---------------CTTACTTTGGACATGACAAAACCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509977 24 + 247518478 ---------------CTTACTTTGGACATGACAAAACCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464003 24 + 131632457 ---------------CTTACTTTGGACATGACAAAACCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657973 24 + 6458163 ---------------CTTACTTTGGACATGACAAAACTT i nomLeu2.GL397366 C 0 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4141612 285 - 10418462 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94060564 24 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146740227 77 + 158406734 I e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=34127.000000 s mm10.chr1_GL456221_random 55880 30 + 206961 TTCCATTGTGAAGTGGAACTA--TTAGTTAAG- s rn5.chr9 92370367 30 + 121549591 CCCCATTGTGAAGTGGAATCA--TTAGTTAAA- i rn5.chr9 C 0 C 0 s hg19.chr2 231132277 33 + 243199373 CCCCATTGCAAGCCAGAGTCATTTTAGGGAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510001 33 + 247518478 CCCCATTGTAAGCCAGAGTCATTTTAGGGAAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464027 33 + 131632457 CCCCATTGTAAGCCAGAGTCATTTTAGGGAAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657997 33 + 6458163 CCCCATTGTAAGCCAGAGTCATTTTAGGGAAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060588 33 + 106825570 CCCCGTCGTAAGCCAGAGTCATTTTAGCGAAAA i rheMac3.chr12 I 24 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4141612 285 - 10418462 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146740227 77 + 158406734 I e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=21745.000000 s mm10.chr1_GL456221_random 55910 14 + 206961 TCCTGCTGATTAT-----T s rn5.chr9 92370397 14 + 121549591 CCCTGCCGATTAT-----T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141897 19 - 10418462 TCTTGCCATTTATTCAGAT i speTri2.JH393335 I 285 C 0 s hg19.chr2 231132310 14 + 243199373 TTTTGCCAGTTAT-----T i hg19.chr2 C 0 I 5 s panTro4.chr2B 235510034 14 + 247518478 TTTTGCCAGTTAT-----T i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 119464060 14 + 131632457 TTTTGCCAGTTAT-----T i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 3658030 14 + 6458163 TTTTGCCAGTTAT-----T i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94060621 14 + 106825570 TGTTGCTAGTTAT-----T i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 146740227 77 + 158406734 I e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=167312.000000 s mm10.chr1_GL456221_random 55924 95 + 206961 AAGTACAAAACGCTGAG----TGGTTGTGAG-AACACAAGGAGGAGCC-CGGGTTCTGCCG-TGGGAGAC---TGGCTTTGAGACAG-CAACCCCATGATGAATGG s rn5.chr9 92370411 99 + 121549591 AGGTGCAAGACTCAGAAGTTCTGACTGTAAG-AGCACAAGGAGGAACTGCAAGTTCTGTTA-TGAGAGAC---TG-CTTTGAGAAAG-CAATCCCATGACAAGTGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141916 98 - 10418462 GGGTGCAAGAGTTAGAA----TCATAGGGAGTCTCTAAAGGAGGGG---CAGGTTTTGTCA-GGGAGTACTTGTGGCTTTAAGGAAGACAGTCATGTGACAAACAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132329 98 + 243199373 AAGTACAAGAGTTAGAA----TCATGATGAA-AGTATACAGAGGAAGTGAACATTTTGTC--GGGGAGAT-TATGGCTTTGGCAAAGACAATCCCGTGACAAACAG i hg19.chr2 I 5 C 0 s panTro4.chr2B 235510053 98 + 247518478 AAGTACAAGAGTTAGAA----TCATGATGAA-AGTATACAGAGGAAGTGAACATTTTATC--GGGGAGAT-TATGGCTTTGGCAAAGACAATCCCGTGACAAACAG i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 119464079 98 + 131632457 AAGTACAAGAGTTAGAA----TCATGATGAA-AGTATACAGAGGAAGTGAACATTTTGTC--GGGGAGAT-TATGGCTTTGGCAAAAACAATCCCGTGACAAACAG i gorGor3.chr2B I 5 C 0 s nomLeu2.GL397366 3658049 100 + 6458163 AAGTACAAGAGTTAGAA----TCATGATGAA-AGTATACAGAGGAAGTGAACATTTTGTCAGGGGGAGAT-TATGGCTTTGGCAAAGACAATCCCGTGACAAACAG i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 94060635 100 + 106825570 AAGTACAAGAGTTAGAA----TCATGATGAA-AGTATACAGAGGAAGTGAAACTTTTGTCAGGGGGAGAT-TATGGCTTTGGCAAAGACAATCCCATGGCAAACAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740304 98 + 158406734 AAGTGTAGGAGTTAGAA----TCGTGGTGAA-AGTATACAGAGGAAGTGAAAGTTTTGTC--GGGGGGAA-TATGGCTTTGGCAAAGACAATCCCATGACAAACAG i calJac3.chr6 I 77 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212426340 1083 + 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1067.000000 s mm10.chr1_GL456221_random 56019 1 + 206961 A s rn5.chr9 92370510 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142014 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132427 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510151 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464177 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658149 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060735 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740402 1 + 158406734 C i calJac3.chr6 C 0 C 0 s felCat5.chrC1 212427423 1 + 221441202 C i felCat5.chrC1 I 1083 T 9478 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=401967.000000 s mm10.chr1_GL456221_random 56020 221 + 206961 AAAAGGA----TGTGT--GGTTCTCAGTGTGAACAGTGTGTTG-CCGTGGGTGGACTACCAGGCTCTCAAGAGAAGCACGGGCTAAAAGGGGGACAT-----CAATGACCTGATAGTAGTTGACTCAAGCTTACATCCACAGTGAGAAAAATGA-CTTAT-TCTCA--GACTGGCAAGCCATCATG-TGCCTTTGTGAACGTT------------CCATGGTATTGTAGGACCAAGTTTCTTTGTAC--TTT s rn5.chr9 92370511 228 + 121549591 GGAAGGA----TGCGT--GGTTATGAGTATGACCAGTGTGTTG-CCATGTGTGGACTACTAGGCTCTCAAGAGAAGCAGAGGCTAAAAGGAAGACATGTAGTCAATGACCTGACAGTAGTTGACTCAAGATTACATACACAGTGAGAAAAATGA-CTTAC-TCTCACAGACTGGCAAGTCACCACG-TATCTTTGTGAATGGT------------CAATGAGAGAGTAGAACCAAACTTCTTTACAG--TTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142015 240 - 10418462 GATGAGGCCATTGCATTCAGCAATGAATGTGAATGGTGTGGGGCCCAGGCATGGAACACTGGGATCAC----TAACCAGAGACTCAAAAGGAGACACATGACCAATGACACGAGAATAACTTAATCCAGCTTGCATACC-----ACATAAATGA-TTTGTGGTTCA--AACTGACAAGACACCAAGTTGCCCTCTTGAAGGTTGTGATGAGGAACCCAAGACAAAGTGTGACCAAACATCTTTGCACAATTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132428 225 + 243199373 AAAGAGGCCACTATATTTCAGTATAAGTGTGAATGGTGTGTTCCACATGAAT--------------------GAAGCAGAAACTGAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACT----AAACAAAATGA-TTTTC-TTTCACAAATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACCCAAGAAAAAATGTGACCGAACATCTTTGCACAGTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510152 225 + 247518478 AAAGAGGCCACTATATTTCAGTATAAGTGTGAATGGTGTGTTCCACATGAAT--------------------GAAGCAGAAACTGAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACT----AAACAAAATGA-TTTTC-TTTCACAAATTGGCAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACCCAAGATAAAATGTGACCAAACATCTTTGCACAGTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464178 225 + 131632457 AAAGAGGCCACTATATTTCAGTATAAGTGTGAATGGTGTGTTCCACATGAAT--------------------GAAGCAGAAACTGAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACT----AAACAAAATGA-TTTTC-TTTCACAGATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACCCAAGATAAAATGTGACCAAACATCTTTGCACAGTTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658150 222 + 6458163 AAAGAGGCCACTATATTTCAGTATAAGTGTGAATGGTGTGTTCCACATGAAT--------------------GAAGCAGAAAC-AAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACT----AAACAAAATGA-TTTTC-TTTCACAAATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACCCAAGATAAAATGTGACCAAACATCTTTG--CAGTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060736 225 + 106825570 AAAGAGACCGCTATGTTTCAGTACAAGTGTGAATGGTGTGTTCCACATGAAT--------------------GAAGCAGTAACTGAAAAGGGAACATACGATTAATTACATGATTGTAGTTGACTCCAGATTGCATACT----AAACAAAATGA-TTTTC-TTTCACAAATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACTCAAGATAAAGTGTGGCCAAACATCTTTGCACAGTTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740403 225 + 158406734 AAAGAGGCCACTATA-TTCGGTTTAAGTGTGAATGGTGGGTTGCACATGAAT--------------------GAAGCAGAGACTGAAAAGGGGACATACGATTAATTACATGATTGTAGTTGACTCCAGATTATATACT----AAACAAAATGACTTTTT-TCCCACAAATTGCTAAGACACTAGG-TGTCCTCATGAAGGTTTTGATGAGGGACCCAAGATCAAGTGGGACCAAACATCTTTGAACAGTTT i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e equCab2.chr6 17866154 220 + 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=253948.000000 s mm10.chr1_GL456221_random 56241 108 + 206961 GGCTTCTGTCTGGTGGGTGAGTCCACATTCAT----TAATTTGTGAGGCTGACTTGTCTTGGGATCTTGTCAGACCTTCATGTCCATTTGTCTGTTTTG--TTCCGTTATTTTC s rn5.chr9 92370739 104 + 121549591 GGCTCCCAACTGGTGGAT----CCACATTTAT----TAGTTTATGAGGCTGGCTTGGCTTGGGAACTTGTCGGACCTTCCCGTCCATCTGTCTGTTTTG--TGTTGTTATCTTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142255 105 - 10418462 GGCCACTGTCT-ATGAAC----CCACATCCAT----CAGTTTGGGGGGCTGGCTTGGATTAAGGACTTATTAGACCTTTGCCTCCATATATGTGCTTTGGATCATGTtcttttc i speTri2.JH393335 C 0 I 125 s hg19.chr2 231132653 104 + 243199373 GGCTACTGTCTAATGGAC----CCACATCCAT----TAGTTTTAGGGGCTGGCTTGAATTGAGGACTTATCAGACCTTGACCACCAGCTGTTTGCTTTG--GATCACTGTCTTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510377 104 + 247518478 GGCTACTGTCTAATGGAC----CCACATCCAT----TAGTTTTAGGGGCTGGCTTGAATTGAGGACTTATCAGACTTTGGCCACCAGCTGTTTGCTTTG--GATCACTATCTTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464403 104 + 131632457 GGCTACTGTCTAATGGAC----CCACATCCAT----TAGTTTTAGGGGCTGGCTTGAATTGAGGACTTATCAGACCTTGGCCACCAGCTGTTTGCTTTG--GATCACTATCTTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658372 89 + 6458163 GG---------------C----CCACAACCAT----TAGTTTTAGGGGCTGGCTTGAATTGAGGACTTATCAGACCTTGGCCATCAGCTGTTTGCTTTG--GATCACTATCTTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060961 104 + 106825570 GGCTACTGTCCAATGGAC----CCACATCCAT----TAGTTTTGGGGGCTGGCTTGAATTGAGGACTTAGCAGACCTTGGCCACCATCTGTTTGCTTTG--GATCACTATCTTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740628 103 + 158406734 GGCTACTGTCTAATGGAC----CCACATCCAT----TAGTTTTGGGGGCTGACTTGGATTGAGGACTTATCAGACTGTGGCCACC-GCTGCTTGCTTTG--GATCACTGTCTTC i calJac3.chr6 C 0 C 0 s equCab2.chr6 17866374 108 + 84719076 GGCTCCTGTTTAATGGAT----CCTCCTCCGTGAAATAGTCTTTAGGGCTGGCTTGGATAGGGGACTTATGAGGTCTATGCCTCTATCTATTTGCTTTG--GATCACTTTCTTA i equCab2.chr6 I 220 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=108228.000000 s mm10.chr1_GL456221_random 56349 38 + 206961 TGCTATTCAGAAAG-ATGGGCGAATCAGGGGCAGAC---ACA------ s rn5.chr9 92370843 38 + 121549591 CAATATTCAGAGAG-ATGGGAGAATCAGGCGCAGAC---ACA------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142485 42 - 10418462 TAATATTCAGAAAGCACAGGAAAATCAGAAACAGACAATACA------ i speTri2.JH393335 I 125 C 0 s hg19.chr2 231132757 39 + 243199373 TAACATTCAGAAAGCACAGGAAAATCAGGAACAAGC---ACA------ i hg19.chr2 C 0 I 128 s panTro4.chr2B 235510481 39 + 247518478 TAACATTCAGAAAGCACAGGAAAATCAGGAACAAGC---ACA------ i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119464507 39 + 131632457 TAACATTCAGAAAGCACAGGAAAATCAGGAACAAGC---ACA------ i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3658461 39 + 6458163 TAACATTCAGAAAGCACAGGAAAATCAGGAACAAAC---ACA------ i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94061065 39 + 106825570 TAACATTCAGAAAGCACAGGAAAATCAGGAACAAAC---ACA------ i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146740731 39 + 158406734 TAACATTCAGAAAGCATAGGAAAATCAGAAACAAAC---ATG------ i calJac3.chr6 C 0 I 2 s equCab2.chr6 17866482 45 + 84719076 TAACTTTCAAGAAACACAGGAAAGTCAGGAACAAAC---AAACACACG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=28382.000000 s mm10.chr1_GL456221_random 56387 16 + 206961 AGG-----AAAAACACTTTTT s rn5.chr9 92370881 16 + 121549591 AGG-----AAAAACACCTTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142527 18 - 10418462 AGACTTTTAAAAACA---GAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132924 16 + 243199373 AGA-----GATAAGACTTTTT i hg19.chr2 I 128 C 0 s panTro4.chr2B 235510522 16 + 247518478 TGA-----AATAAGACTTttt i panTro4.chr2B I 2 I 508 s gorGor3.chr2B 119464548 16 + 131632457 TGA-----AATAAGACTTTTT i gorGor3.chr2B I 2 I 523 s nomLeu2.GL397366 3658502 16 + 6458163 TGA-----AATAAGACttttt i nomLeu2.GL397366 I 2 I 482 s rheMac3.chr12 94061106 16 + 106825570 TGA-----AATAAGACTTttt i rheMac3.chr12 I 2 I 475 s calJac3.chr6 146740772 16 + 158406734 TGA-----TATAAGACTTTtt i calJac3.chr6 I 2 I 127 s equCab2.chr6 17866527 16 + 84719076 TGA-----GACAAGACTTTTT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1827.000000 s mm10.chr1_GL456221_random 56403 19 + 206961 ---------------AAAAGTTCCCGAGACTGAA s rn5.chr9 92370897 19 + 121549591 ---------------AAAAGTTTCTGAGACTAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142545 15 - 10418462 ---------------AAAAGT----GAGAACAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132940 9 + 243199373 -------------------------AAAAATAGA i hg19.chr2 C 0 I 336 s calJac3.chr6 146740915 19 + 158406734 ---------------AAGACTTTTTAAAAATAGA i calJac3.chr6 I 127 C 0 s equCab2.chr6 17866543 30 + 84719076 AAAAATAGAAAAAAGAACAGT----GAGAGTAAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94061122 475 + 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3658518 482 + 6458163 I e gorGor3.chr2B 119464564 523 + 131632457 I e panTro4.chr2B 235510538 508 + 247518478 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-2261.000000 s mm10.chr1_GL456221_random 56422 9 + 206961 TG---TAGC----AAG-- s rn5.chr9 92370916 9 + 121549591 TG---TAGC----AAG-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142560 13 - 10418462 TGATATAGT---GGAG-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133285 9 + 243199373 TG---AAAC----AAG-- i hg19.chr2 I 336 I 10 s calJac3.chr6 146740934 9 + 158406734 TG---AAAG----AAA-- i calJac3.chr6 C 0 C 0 s equCab2.chr6 17866573 15 + 84719076 TG---AAGTAGTGAAGTG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94061122 475 + 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3658518 482 + 6458163 I e gorGor3.chr2B 119464564 523 + 131632457 I e panTro4.chr2B 235510538 508 + 247518478 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=10755.000000 s mm10.chr1_GL456221_random 56431 12 + 206961 AATA--AACATAGA s rn5.chr9 92370925 12 + 121549591 CATA--AACACAGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142573 12 - 10418462 AATA--AGTACATA i speTri2.JH393335 C 0 I 4 s hg19.chr2 231133304 12 + 243199373 AATA--AGCACATT i hg19.chr2 I 10 I 4 s nomLeu2.GL397366 3659000 12 + 6458163 AATA--AGCACATT i nomLeu2.GL397366 I 482 I 4 s rheMac3.chr12 94061597 12 + 106825570 AATA--AGCACATT i rheMac3.chr12 I 475 I 4 s calJac3.chr6 146740943 12 + 158406734 AGTAACAGTAGA-- i calJac3.chr6 C 0 I 30 s equCab2.chr6 17866588 12 + 84719076 AATA--AACACATT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e gorGor3.chr2B 119464564 523 + 131632457 I e panTro4.chr2B 235510538 508 + 247518478 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=148761.000000 s mm10.chr1_GL456221_random 56443 86 + 206961 GACAGAATATTTGCTACATACTGTACCTACAAATTAAGATA--GAA-----ATTTCTCTATGTTGATTTCTA-----C-ACGCATCTTTAACTAA-CCTG- s rn5.chr9 92370937 86 + 121549591 GGCAGAATATTTGCTACATGCTGTACCTACAAATTAAGGTA--GAA-----ATTTCTTTACGTTGCTTTCTA-----C-ATGCATCTTTAACTAA-CCTA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142589 89 - 10418462 GAGGGAATAATTGCTAGATGCTGTACTTCcaaaccaaaatatctaa-----acaaaaccaaattaaatcaga-----tgaaacaatttaaatcag-ataa- i speTri2.JH393335 I 4 C 0 s hg19.chr2 231133320 83 + 243199373 GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTGTATCTAA------TTGTA-----T-ACCCATGTTTAAATAAGATAA- i hg19.chr2 I 4 C 0 s panTro4.chr2B 235511046 83 + 247518478 GAGAAAATGTTGGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTGTACCTAA------TTGTA-----T-ACCCATGTTTAAATAAGATAA- i panTro4.chr2B I 508 C 0 s gorGor3.chr2B 119465087 83 + 131632457 GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTGTATCTAA------TTGTG-----T-ACCCATGTTTAAATAAGATAA- i gorGor3.chr2B I 523 C 0 s nomLeu2.GL397366 3659016 83 + 6458163 GAGAAAATGTTTGCTAAGTGGTATACTTCCAACTGAAAATATCTAA-----TTCTATCTAA------TTGTA-----T-ACCCATCTTTAAATAAGATAA- i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94061613 88 + 106825570 GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACCCAAAATATCTAA-----TTCTATCTAA------TTGTATGCCCT-GCCCATCTTTAAATAAGATAA- i rheMac3.chr12 I 4 C 0 s calJac3.chr6 146740985 83 + 158406734 GAGAAAGCGTTTGCTAAGTGCTGGACTTCCAACCCCAAATATCTAA-----TTCTATCTAA------TTGTA-----T-ACCCATCTTTAAATAAGATCA- i calJac3.chr6 I 30 C 0 s equCab2.chr6 17866600 87 + 84719076 AACAGAGTATTTGCTAAATGCTGCACCTCCAAACGAAAATGTCTAACTATTTTGTATCTAA------TTGTA-----T-ATGCATCTTTAGATAG--TAAG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 30041 7475 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=7823.000000 s mm10.chr1_GL456221_random 56529 2 + 206961 AC s rn5.chr9 92371023 2 + 121549591 AC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142678 2 - 10418462 at i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133403 2 + 243199373 AT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511129 2 + 247518478 AT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465170 2 + 131632457 AT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659099 2 + 6458163 AT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061701 2 + 106825570 AT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741068 2 + 158406734 AT i calJac3.chr6 C 0 C 0 s equCab2.chr6 17866687 2 + 84719076 AT i equCab2.chr6 C 0 I 4 s pteVam1.scaffold_9232 37516 2 + 60856 AT i pteVam1.scaffold_9232 I 7475 I 30 e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=70061.000000 s mm10.chr1_GL456221_random 56531 25 + 206961 TCAGAAATAAAAGCACAATGAA--------------ACA s rn5.chr9 92371025 25 + 121549591 TCAGAAATAAAAGCACAGTGAG--------------TCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142680 37 - 10418462 tcagaAATAAAAGCCCAGGGAAACAATCCAGA--GCTCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133405 37 + 243199373 TCAGAACTAGGAGCTCAGTGAAACAAGTCAGA--GTTCG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511131 37 + 247518478 TCAGAACTAGGAGCTCAGTGAAACAAGTCAGA--GTTCG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465172 37 + 131632457 TCAGAACTAGGAGCTCAGTGAAACAAGTCAGA--GTTCG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659101 37 + 6458163 TCAGAACTAGGAGCTCAGTGAAACAAGTCACA--GTTCG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061703 39 + 106825570 TCAGAACTAAGAGTTCAATGAAACAAGTCAGATGGTTCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741070 37 + 158406734 TCAGAACTAAGAGCTCAACGAAACAAGTCAGA--GTTCA i calJac3.chr6 C 0 C 0 s equCab2.chr6 17866693 25 + 84719076 TCAGAAGTAAGAGCTCAGTGAAACA-------------- i equCab2.chr6 I 4 I 6 e pteVam1.scaffold_9232 37518 30 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=14310.000000 s mm10.chr1_GL456221_random 56556 4 + 206961 AGTT s rn5.chr9 92371050 4 + 121549591 AGTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142717 4 - 10418462 AGTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133442 4 + 243199373 AGTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511168 4 + 247518478 AGTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465209 4 + 131632457 AGTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659138 4 + 6458163 AGTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061742 4 + 106825570 AGAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741107 4 + 158406734 AGTT i calJac3.chr6 C 0 C 0 s equCab2.chr6 17866724 4 + 84719076 AGCT i equCab2.chr6 I 6 C 0 s pteVam1.scaffold_9232 37548 4 + 60856 ATCT i pteVam1.scaffold_9232 I 30 I 116 e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=200179.000000 s mm10.chr1_GL456221_random 56560 94 + 206961 ------CCAGTTGATACAGAGTCACTTGGTGTGGTGGTTCAGGAACACTATCTGAA------TTGTGCACAAGCAGTCTGGAATTTGCATCTGTAGGACA----C-----TCCC--------------A s rn5.chr9 92371054 95 + 121549591 ------CCAGCTGCGACTGAGTCACTTGGC---GTGGTTCAGAATCATTATCTGAG------TCGTACACAAGAGGTTTAGATTTTACTTCTGCAGGACACTCCC-----TCCC--------------A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142721 116 - 10418462 ------GTTGTTAATGCTGATTCATTTGGC--AGTGGGCCAGGAAGACCA-CTGAGCTAGGCCCAGGCCCAAGAGGTATGGAATTGACCCCCGTGAGGTG----CAAGGGTCCCATTGGACGTTCTTAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133446 109 + 243199373 ------GTTGTTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAG------CTGGACAC-AGTGGCCTGAGATTCATGCCTGTGGTTC-----CAAGGGTCCCACAGGACACTCCCCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511172 109 + 247518478 ------GTTGTTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAG------CTGGACAC-AGTGGCCTGAGATTCATGCTTGTGGATC-----CAAGGGTCCCACAGGACACTCCCCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465213 109 + 131632457 ------GTTGTTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAG------CTGGACAC-AGTGGCCTGAGATTCATGCTTGTGGATC-----CAAGGGTCCCACAGGACACTCCCCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659142 109 + 6458163 ------GTTGTTGAGAAAGTTTCACTTGGC--AGTAGGTCAGAAAAATGACCTCAG------CTGAACAC-AGTGGCCTGAGATTCATGCTTGTGGATC-----CAAGGCCCCCACAGGACACTCCCCG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061746 109 + 106825570 ------GTTTCTGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGGCCTGAG------ATGGACAC-AGTGGCCTGAGATTCATGCTTGTGGATC-----CAAGGGCCCCACAGGACACTCCCCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741111 110 + 158406734 ------GTTGTTGAGAAAGATTCACTTGGC--AATAGGTCAGAAAAGTGACCTGAA------CTGGACACAAGTGGCCTGAGATTCATGCTTGTGGATC-----CAAGGGGCCCACAGGACACTCCCCA i calJac3.chr6 C 0 C 0 s equCab2.chr6 17866728 115 + 84719076 CAAGTTGTTGTTGCGACAGATTCACTTGGC--AGCGGATCAGGGAGACAGTCTGAG------TTGGGCACAAGAGGCCCGTGATTTACACCTGTTGGTC-----CAAGGGTCCTACAGGACACTCTTA- i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_9232 37552 116 + 60856 I e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4190.000000 s mm10.chr1_GL456221_random 56654 1 + 206961 G s rn5.chr9 92371149 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142837 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133555 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511281 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465322 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659251 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061855 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741221 1 + 158406734 G i calJac3.chr6 C 0 C 0 s equCab2.chr6 17866844 1 + 84719076 G i equCab2.chr6 I 1 C 0 s pteVam1.scaffold_9232 37668 1 + 60856 A i pteVam1.scaffold_9232 I 116 T 9783 e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1084781.000000 s mm10.chr1_GL456221_random 56655 575 + 206961 CAAG--CCTT-CAGATGATCTTATGGATAACAGCATATATGGAAGCTGGAGACAATCACTCCCATACCTGA-------AGCTGAAAGC------------TTGTTGAGTGAAGGTCCTGGTAGGGGTGGGAGGAG-ACACTGCACTCAAAGTATATGGCTTCTACAAAAAAGGCCACAGTTGG---TTGTGCCTAGAACTTCGAGAAGCAGGTAGTT------CAGGGTCTG--TAGACTTTGCAAAGCAGAAGTGGTTATGCACAGGCTACCCTGAACCAATC-ATCCAAGCAGTTGGAAG-GTGACTATTGCTGATTGGCTGGATTTAAAATTTGTACCACCGCTTCTGATTGGGTAGATTTCAGATGCATGGTTAGCAA-GCAGGTAGTCGATGGTTAAATGGGAAGGGTTGGGAATTGGTAACATCAGCAAAGGTTACCTTTGACTGTTTT-------------------------CAA----------AGCACAGTT-----------TTATTCTTCCTCGTGGAA-GATAAGAACGTT--------AAATCTTTCTTTAT------GACTACCTGTAGTAAATTAAATG--T-GGGAAATGAGAAGTAATGTAG---ATGTGGAAAGAGAATGGCTCCATTTGATCTCAGGTGTGATTGCTGGAGCAGGCATT s rn5.chr9 92371150 579 + 121549591 CAAG--CCTA-CAGATGATTCTGTTGAGAACATCATACATAGAAGCTGGAGACCATCATTCCCGTATCTGA-------AGCTGCAAGC------------TTGCCTAGTGAAGTCCCTGGAGGGTGGGGGAGGGGAACACCATGCTCAAAGCGTGTGGCTTCTACAGAAAAGGCCACAGTTGG---TTGTGCTTGG----TTAAGAAACAGGTAGTT------CAGGGTCTG--C---TTTTGCAAAGCAGAAGTGGTTATGCCCAGGCCGCCCTGAAGCAATC-ATCCAAGCATTTAGAGG-GTGACTGCTGCTGATTGGCTGGATTTCAAATTTGTATTGTGGCTTCTGATTGGGTAGATTTCAGAAGCACGGTTAGTGA-GTAGGTAGTCATTGGCTAAATGGGAAGGGTTTGGAATTGGTACAATCAGCCAAGATTACTTTTGACTGTTTT-------------------------AAAAAAACAAAACAAAACAGTT-----------TTATTCTTCCTCGTGGGA-AATAAGAACTTT--------AAAGCTTTTTTTAC------AGCTACCTGTAGTAAATTAAAGG--T-GGAACGTGGGAAATAATGTAG---ATGCAGAAAGAGAATGGCTCCACTTGATCTTGGGTGTGATGACTGGAGCAGGTTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142838 586 - 10418462 CAAG--TCTTCCAGAGGATATTGGTGAGGACTCCAAAATTTGAAGGGAGAACTCATCACT-TAATATCTGAGCTCAGTATCTG--AGA------------TTGCTAAGCAAAGGTCCCG------TTGGGAGGTG-ACACTGTGCTTATGGGACACAGTCTCTATGAAACAGGAAACTGCTGA---TTTTTTATCAAGTTTTGGAAAATAAGGATTT------CGGGACCCAACC---CTTCTAGAAGCAGGAGTGTTTATTTGTATGTTGGCATTCAGCCACT-GTTCAGGCTTTTTTAAG-GGG--TGTTGGCCGATGGCTCCATGTCAATCCTGCAGGGCTGCCTCTGATTGGCTGACTTTGAGCAATGTGGTTAGTGATGTAAGTGGTCACTGGCAATTTGGGATGAGTTTGAAAATGGT----TCTGCTGGG--TACTCTTTACTATTTC-------------------------CAA----------AGAACAACTAGTGTTTTTTGTTTTTTTTTTTTCTGGAA-GAAAAGAACTTTTTTTTAAAAAAAAATTCTCTG-------GACTACAAGTAGAAAGATATAAGTTT-TAGAAAAGGCAAGTGAGGTGT--CAAATGGAAAGAGCAGGGCTCTGCTGGATCTTGGGTGTGGTTATT-GAGCAGATATT i speTri2.JH393335 C 0 T 5375 s hg19.chr2 231133556 567 + 243199373 CAAGAATCTTCAAGATAATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATAATCTGA-------AACTAAAAGC-TGATTTATTCCTAGCTAAGCAAGGCACCTA------GTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTCTCTATAGAAAAGGAAACTGCAG----TTTTATAGAGAGTTTTAGGAAGCATATTGTG------TAGGGACTC--CAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCAGTAATGGGCTCGCTTTCAGAAATGTGACTGGGGATATAAGTAGTCAGTGGCCAATTGGGATGAGTTT--AAATAGT---------------TGCTTTTCACTATTGT-------------------------CAA----------AGAACAGTA-----------GTATTTTC-----TGGAATGATAAGAGTTTC------------CTTGCTTTATTCTCAGGACTACAAGTACAAAAATAAAAG--TAGAGAAAAGGAGGATGAGGTGCATAACATGGGGAGAGCGTGGCTCTGTTATGTGTCAAATGTGATTATTGGAGCAGGTATA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511282 567 + 247518478 CAAGAATCTTCAAGATAATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATAATCTGA-------AACTAAAAGC-TGATTTATTCCTAGCTAAGCAAGGCACCTA------GTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTCTCTATAGAAAAGGAAACTGCAG----TTTTATATAGAGTTTTAGGAAGCATATTGTG------TAGGGACTC--CAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCAGTAATGGGCTCGCTTTCAGAAATGTGACTGGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAATAGT---------------TGCTTTTCACTATTGT-------------------------CAA----------AGAACAGTA-----------GTATTTTC-----TGGAATGATAAGAGTTTC------------CTTGCTTTATTCTCAGGACTACAAGTACAAAAATAAAAG--TAGAGAAAAGGAGGATGAGGTGCATAACATGGGGAGAGCGTGGCTCTGTTATGTGTCAAATGTGATTATAGGAGCAGGTATA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465323 567 + 131632457 CAAGAACCTTCAAGATAATCTTGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATAATCTGA-------AACTAAAAGC-TTATTTATTCCTAGCTAAGCAAGGCACCTA------CTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTCTCTACAGAAAAGGAAACTGCAG----TTTTACATAGAGTTTTAGGAAGCATATTGTG------TAGGGACTC--CAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCAGTAATGGGCTCGCTTTCAGAAATGTGACTGGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAATAGT---------------TGCTTTTCACTATTGT-------------------------CAA----------AGAACAGTA-----------ATATTTTC-----TGGAATGATAAGAGTTTC------------CTTGCTTTATTCTCAGGACTACAAGTACAAAAATAAAAG--TAGAGAAAAGGAGGATGAGGTGCATAACATGGGGAGAGCGTGGCTCTGTTATGTGTCAAATGTGATTATTGGAGCAGGTATA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659252 572 + 6458163 CAAGAATCTTCAAGATAATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTACTACT-CATATTCTGA-------AACTAAAAGC-TGATTTATTCCTTGCTGAGCAAGGCACCTG------GTGGGAGGAG-G-CCTGTGCTTATAAGACACAGTCTCTATAGAAAAGGAAACTGCAG----TTTTATATAGAGTTTTAGGAAGCATATTGTGGGACTCCACGGACTC--CAAACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAGTGCAGGCTTTGTGGAG-GGGG-TGTTGCTGACTGGCTGAGCTTCAGATATGTAGAACTGCCACTAATGGGCTCGCTTTCAGAAATGTGACTAGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAATAGT---------------TGCTTTTCACTATTGT-------------------------CAA----------AGAACAGTA-----------GTATTTTC-----TGGAATGATAAGAGTTTT------------CTTGCTTCATTCTCAGGACTACAAGTACAAAAATAAAAG--TAGAGAAAAGGAGGATGAGGTGCATAACATGGGGAGAGCATGGCTCTGTTATGTGTCAAATGTGATTATTGGAGCAGGTATA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061856 567 + 106825570 CAAGAATCTTCAAGATTATCTCGGCAGGAACTCCAATTTTTGAAGGGCTAGGCTAGTACT-CATTAACTGA-------AACTTAAAGC-TGATTTATTCCTTGCCAAGCAAGGCATCTG------GTGGGAGGAG-GCCCTGTGCTTATAAGACACAGTCTTTATAGAAATGGAAACTGCAT----TTTTATATAGAGTTTTAGGAAGCATATTGTT------TAGGGACCC--CAGACCTTCAGAAACAGGAGTGTTTATGAGTAATTTAGCATTTGGCCATCAATGCAGGCTTTGTGGAG-GGGGCTGTTGCTGA-TGGCTGGGCTTCAGATATGTAGAACTGCCACTGATGGGCTTGCTTTCAGAAATATGGTTAGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAATAGT---------------TGCTTTTTACTATTGT-------------------------CAA----------AGAACAGTA-----------GTATTTTC-----TGGAATGATGAGAGTTTT------------CTTGCTTTATTCTCAGTACTACAAGTACGAAAATAAAAG--TAGAAAAAAGGAGGATGAAGTGCATAACATGGGGAGAGCATGGCTCTGTTAAGTGTCAAATGTGATTATTGGAGAAAGTATA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741222 559 + 158406734 CAAGAGTCTTCAAGATAATCTCAGTAGGAACTCCAGTTTTTGAAGGGCAAGGCTACCACT-CTTTATCTGA-------AACTAAAAGC-TGACTTATTCTTTGCTAAGCAAGGCA-CTG------GGGGGAGGAG-GTCCTGTGCTTGTAAGACACAGTCTCTATAGAAAAGGAAACTGTGGGGTTTTTTTTATAGAGTTTTTGGAAACATATTGTT------CAGGGACTC--CAGACCTTCAGAAACAGGAGTGTTTATGAATAATTTAGCATTTGGCCATTGATGCAGGCTTTGTGGAA-GGGGCTGTTGCTGACTGGCTGGGCTTCAAATATGTAGAACTGCCACTGATGGGCTAGCTCTCAGAAATGTGGTTAGTGATATAAGTAGTCAATGGCCAATTGAGATGAG-TT--AAATAGC---------------TACTTTTTACTATTTTNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------------------------------------GAGTTTT------------CTTGCTTTACTCT-AGGACTACAAGTACAAAAATAGAAG--TAGAGAAAGGGAGGATGAGGTGCATAACATGGGGAGAGCATGGCTCTGTTATGTAT----TGTGATTATTGGAGCAGGTATA i calJac3.chr6 C 0 C 0 s equCab2.chr6 17866845 577 + 84719076 CAAGAGTCTTCAAGATGATCTCGGTGGGAACTCCA-TTTTTGAAGGGGTAGACCATCATG-CAATATCTGA-------AGCTAAAAGAAGGATTTATTGCTTGCTAAGCAAGGCACATG------GTGGGAGGAG-G--CAATACTTATAGGACACAGTTTCTTTAAAAGAGGAAATTACTGC---TTTTACATAGAGCTTTGGAAAGCTTATACTT------CAGGAACTG--CAGACTTTCAGAAACAGAAGTATTTGTGAATAGGTTAGCATTTAGCCATAGGCATGGGCTTTCTGGAGTGTGGCTCTTACTGATCGGCTGATTTTCAGAAGTGTAAGGCTGCCGCTCATTGGCTGGCTTT---AAATGTGGTTAGTGATGTAAGTAGTCATTGGCCAATTGAGATGCGTTTAAAACTGGT----TCTGGTTGT--TACTTTTTACAATTTT-------------------------CAA----------AGAACCGTT-----------AGTTTTTTCC---TGAAACGATAAGATCTTT------------TTTATTTTATTCTTAAGGCTACAAGTGGAAAAATAAAAG--TAGAGAAA-GCAGAATGAGATGCAAAAGATAAGAAAAGCATAGCTCTGTGAGATCTCAGGTGTGATTATTGGAGCTGGTGTA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=11820.000000 s mm10.chr1_GL456221_random 57230 5 + 206961 CTGTT s rn5.chr9 92371729 5 + 121549591 CTGTT i rn5.chr9 C 0 T 5832 s hg19.chr2 231134123 5 + 243199373 TTTTT i hg19.chr2 C 0 T 28076 s panTro4.chr2B 235511849 5 + 247518478 TTTTT i panTro4.chr2B C 0 T 24435 s gorGor3.chr2B 119465890 5 + 131632457 TTTTT i gorGor3.chr2B C 0 T 22133 s nomLeu2.GL397366 3659824 5 + 6458163 TTTTT i nomLeu2.GL397366 C 0 T 23782 s rheMac3.chr12 94062423 5 + 106825570 TTTTT i rheMac3.chr12 C 0 T 18462 s calJac3.chr6 146741781 5 + 158406734 TTTTT i calJac3.chr6 C 0 T 29011 s equCab2.chr6 17867422 5 + 84719076 TTTTT i equCab2.chr6 C 0 T 2167 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH478086 133016 3932 - 138096 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=0.000000 s mm10.chr1_GL456221_random 57235 370 + 206961 CACATCTTTTTTTTTTTTTTTTTTTtttggtttttccgagacagggtttctctgtgtagccctggctatcctggaactcactttgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctccccggtgctgggatgaaaggcgtgcgccaccacgccctgctCATCCATTCATTCATTTTTTTCATTGATAGTTGACATATAATTTAATGAGAGACTATGTCATGCCAAGCACAGGGGGAATATATGAAACACAAGGGGAGCCCAGGTTGGGCCCAGACACTCGAGAGAGAAACATGTGTCAACCGAGAGAGTGAAAACAAAGTGGAATTTTAGAACCAAGGTGCTGGCACGTTGTAGAA e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94062428 18462 + 106825570 T e equCab2.chr6 17867427 2167 + 84719076 T e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3659829 23782 + 6458163 T e gorGor3.chr2B 119465895 22133 + 131632457 T e panTro4.chr2B 235511854 24435 + 247518478 T e hg19.chr2 231134128 28076 + 243199373 T e calJac3.chr6 146741786 29011 + 158406734 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 92371734 5832 + 121549591 T a score=699.000000 s mm10.chr1_GL456221_random 57605 55 + 206961 TGAACATAAAATCAGCAGGTCTCAGGTAGAGAACAGCCTCTATTGTTCCCACTGG s equCab2.chr6 66877816 50 - 84719076 TGAACATG---TCTGCAAGTATCAG--AGTGGGCTTCCTCCTTTCCTGCAAAAGG i equCab2.chr6 n 2167 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94062428 18462 + 106825570 T e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3659829 23782 + 6458163 T e gorGor3.chr2B 119465895 22133 + 131632457 T e panTro4.chr2B 235511854 24435 + 247518478 T e hg19.chr2 231134128 28076 + 243199373 T e calJac3.chr6 146741786 29011 + 158406734 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 92371734 5832 + 121549591 T a score=559.000000 s mm10.chr1_GL456221_random 57660 5 + 206961 CTCAT s rn5.chr9 29191746 5 - 121549591 CTCAT i rn5.chr9 n 5832 C 0 s equCab2.chr6 66877866 5 - 84719076 GGCAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94062428 18462 + 106825570 T e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3659829 23782 + 6458163 T e gorGor3.chr2B 119465895 22133 + 131632457 T e panTro4.chr2B 235511854 24435 + 247518478 T e hg19.chr2 231134128 28076 + 243199373 T e calJac3.chr6 146741786 29011 + 158406734 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1399.000000 s mm10.chr1_GL456221_random 57665 5 + 206961 CCTTC s rn5.chr9 29191751 5 - 121549591 CCTTC i rn5.chr9 C 0 C 0 s calJac3.chr6 11696729 4 - 158406734 -CTTC i calJac3.chr6 n 29011 C 0 s equCab2.chr6 66877871 5 - 84719076 AGTTC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH478086 133016 3932 - 138096 T e rheMac3.chr12 94062428 18462 + 106825570 T e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3659829 23782 + 6458163 T e gorGor3.chr2B 119465895 22133 + 131632457 T e panTro4.chr2B 235511854 24435 + 247518478 T e hg19.chr2 231134128 28076 + 243199373 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=495.000000 s mm10.chr1_GL456221_random 57670 3 + 206961 ATA s rn5.chr9 29191756 3 - 121549591 ATA i rn5.chr9 C 0 C 0 s calJac3.chr6 11696733 3 - 158406734 AAT i calJac3.chr6 C 0 I 1 s turTru2.JH490333 10890 3 + 53618 ATC i turTru2.JH490333 n 3932 C 0 s equCab2.chr6 66877876 3 - 84719076 ATA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e rheMac3.chr12 94062428 18462 + 106825570 T e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 3659829 23782 + 6458163 T e gorGor3.chr2B 119465895 22133 + 131632457 T e panTro4.chr2B 235511854 24435 + 247518478 T e hg19.chr2 231134128 28076 + 243199373 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=5500.000000 s mm10.chr1_GL456221_random 57673 1 + 206961 C s rn5.chr9 29191759 1 - 121549591 C i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_118384 528 1 - 4161 C i dipOrd1.scaffold_118384 N 0 C 0 s hg19.chr2 12096017 1 - 243199373 C i hg19.chr2 n 28076 C 0 s panTro4.chr2B 12033753 1 - 247518478 C i panTro4.chr2B n 24435 C 0 s gorGor3.chr2B 12196074 1 - 131632457 C i gorGor3.chr2B n 22133 C 0 s nomLeu2.GL397366 2824800 1 - 6458163 C i nomLeu2.GL397366 n 23782 C 0 s rheMac3.chr12 12788943 1 - 106825570 C i rheMac3.chr12 n 18462 C 0 s calJac3.chr6 11696737 1 - 158406734 C i calJac3.chr6 I 1 C 0 s turTru2.JH490333 10893 1 + 53618 C i turTru2.JH490333 C 0 I 119 s equCab2.chr6 66877879 1 - 84719076 C i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=274919.000000 s mm10.chr1_GL456221_random 57674 101 + 206961 -----------------------TTTGTTTCATAGCATGAAAATCAGGTTCCGGCTGAGCAGTTATCTCT-GTGTTACTTGGC------------------CTATGTGTAAGCTCC-TGATGACATGAGCCATATATATTTCCT s rn5.chr9 29191760 99 - 121549591 -----------------------TGTGTTTAATAGCATGAAAATCAGGTCCTG--TGAGCAGTTGTCTAT-GTGTTACTTGGC------------------CTAGGTGTAAGCTCC-TGACTACATGGGCCGTATGTTTTTCCT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_118384 529 102 - 4161 -----------------------TACGTTTTGT-GCATCAAAATCAGGTCCTGACTGAATAATCATTTGTGGGGCTACCTGGC------------------CCATGTGTGAGCTCCATAAGGACATGAGCCATGGATGTTTCCT i dipOrd1.scaffold_118384 C 0 I 3 s hg19.chr2 12096018 121 - 243199373 -----------------------TATGTTTTACAGCATCAAAATCAAGTCCTGGCTGAGCAACCATTTGCAGGAttacttggttaacgtctgtcactcccactgtatgtaaactccataaggacatgggacatgtgtgtttttt i hg19.chr2 C 0 I 7 s panTro4.chr2B 12033754 121 - 247518478 -----------------------TATGTTTTACAGAATCAAAATCAAGTCCTGGCTGAGCAACCATTTGCAGGAttacttggttaacgtctgtcactcccactatatgtaaactccataaggacatgggacatgtgtgtttttt i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 12196075 121 - 131632457 -----------------------TATGTTTTACAGCATCAAAATCAAGTCCTGGCTGAGCAACCATTTGCAGGAttacttggttaacgtctgtcactcccactataagtaaactccataaggacatgggacatgtgtgtttttt i gorGor3.chr2B C 0 I 7 s nomLeu2.GL397366 2824801 121 - 6458163 -----------------------TATGTTTTACAGCATCAAAATCAAGTCCTGGCTGAGCAACCATTTGCAGGAttacttggttaacgtctgtcactcccactatatgtaaactccataaggacatgggacatgtgtgtttttt i nomLeu2.GL397366 C 0 I 7 s rheMac3.chr12 12788944 121 - 106825570 -----------------------TATGTTTTACAGCATCAAAATCAAGTCCTGGCTGAGCAACCATTTGCAGGattacttggttaacatctatcactcccactatatgtaaactccataaggacacggaacatgtgtgtttttt i rheMac3.chr12 C 0 I 7 s calJac3.chr6 11696738 117 - 158406734 -----------------------TGTGTTTGACAGCATCAAAGTCAAGTCCCGGCTGAGCAGCCATTTGCAGGAttactcggttaacgtctgtcattcccattataaataaactccataaggacatgggacgtgtgtttt---- i calJac3.chr6 C 0 I 5 s equCab2.chr6 66877880 143 - 84719076 TTTTCCCCAAAATATGGAAATCCTATGTTTTGCAGAACCAAATTCCGGTCCTGGCTGAGCAATCATTTGTGGGAttactggcttaacgtttgtc-ccccggctatgtgtaagctccacaaagacacaggttatgcgtgttttct i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH490333 10894 119 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-3261.000000 s mm10.chr1_GL456221_random 57775 2 + 206961 AC- s rn5.chr9 29191859 2 - 121549591 AC- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_118384 634 2 - 4161 AC- i dipOrd1.scaffold_118384 I 3 C 0 s hg19.chr2 12096146 2 - 243199373 at- i hg19.chr2 I 7 C 0 s panTro4.chr2B 12033882 2 - 247518478 at- i panTro4.chr2B I 7 C 0 s gorGor3.chr2B 12196203 2 - 131632457 at- i gorGor3.chr2B I 7 C 0 s nomLeu2.GL397366 2824929 2 - 6458163 at- i nomLeu2.GL397366 I 7 C 0 s rheMac3.chr12 12789072 2 - 106825570 at- i rheMac3.chr12 I 7 C 0 s calJac3.chr6 11696860 2 - 158406734 ac- i calJac3.chr6 I 5 C 0 s turTru2.JH490333 11013 2 + 53618 -tc i turTru2.JH490333 I 119 I 453 s equCab2.chr6 66878023 2 - 84719076 -tc i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=172312.000000 s mm10.chr1_GL456221_random 57777 78 + 206961 --------AT--TCCCCCTGTGCTTGGCATGTCATAGTCTCTCATTAAATTATATGTCAACTATCAATGAAAAAATGAATGAATGGAT s rn5.chr9 29191861 77 - 121549591 --------AT---CTCCCTGTGCTTGGCATGACATAGTCTTTCAGTAAATTATATGTCAAATATCaatgaaaaaatgaatgaatgaat i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_118384 636 72 - 4161 --------ATTGTAGTGCTGTGTGTGGCATATCACAGTCCCTCAGGAAGATAAGTG--------CAAGTGCAAAATGAATGAATGAAT i dipOrd1.scaffold_118384 C 0 C 0 s hg19.chr2 12096148 73 - 243199373 --------at--tccccctgggcttggcatgtaatagtcactcagtcaaatatttgtcaaatatgaatgaa-----gagtgaatgaat i hg19.chr2 C 0 I 4 s panTro4.chr2B 12033884 73 - 247518478 --------at--tccccctgggcttggcatgtaatagtcactcagtcaaacatttgtcaaatatgaatgaa-----gagtgaatgaat i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196205 73 - 131632457 --------at--tccccctgggcttggcatgtaatagtcactcagtcaaacatttgtcaaatatgaatgaa-----gagtgaatgaat i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2824931 72 - 6458163 --------at--tccccc-aggcttggcatgtaatagtcactcagtcaaacatttgtcaaatatgaacgaa-----gagtgaatgaat i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789074 73 - 106825570 --------at--tccccctgggcttggcatgtaatagtcactcagtcaaacatttgtcaaatatgaatgaa-----gagtgaatgaat i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11696862 72 - 158406734 --------ac--tccccctgggcttggcatgtaatagttactc-gtcaaacatttgtcaaatatgaatgaa-----gagtgaatgaat i calJac3.chr6 C 0 C 0 s equCab2.chr6 66878025 85 - 84719076 accatggtat--tctctctgtgcctgccacagagtggtcattcaataaaataattgtcaaatattaatgaaAAGG-GAATGAAAGAAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH490333 11015 453 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4100.000000 s mm10.chr1_GL456221_random 57855 2 + 206961 Ga s rn5.chr9 29191938 2 - 121549591 gg i rn5.chr9 C 0 I 10 s dipOrd1.scaffold_118384 708 2 - 4161 GA i dipOrd1.scaffold_118384 C 0 C 0 s panTro4.chr2B 12033957 2 - 247518478 ga i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196278 2 - 131632457 ga i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825003 2 - 6458163 ga i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789147 2 - 106825570 ga i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11696934 2 - 158406734 ga i calJac3.chr6 C 0 C 0 s equCab2.chr6 66878110 2 - 84719076 CA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH490333 11015 453 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e hg19.chr2 12096221 4 - 243199373 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-1857.000000 s mm10.chr1_GL456221_random 57857 2 + 206961 gc s dipOrd1.scaffold_118384 710 2 - 4161 AG i dipOrd1.scaffold_118384 C 0 C 0 s panTro4.chr2B 12033959 2 - 247518478 at i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196280 2 - 131632457 at i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825005 2 - 6458163 at i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789149 1 - 106825570 a- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11696936 2 - 158406734 at i calJac3.chr6 C 0 C 0 s equCab2.chr6 66878112 2 - 84719076 GT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH490333 11015 453 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e hg19.chr2 12096221 4 - 243199373 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29191940 10 - 121549591 I a score=1600.000000 s mm10.chr1_GL456221_random 57859 2 + 206961 ca s dipOrd1.scaffold_118384 712 2 - 4161 TG i dipOrd1.scaffold_118384 C 0 C 0 s panTro4.chr2B 12033961 2 - 247518478 ca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196282 2 - 131632457 ca i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825007 2 - 6458163 ca i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11696938 2 - 158406734 ca i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH490333 11015 453 + 53618 I e rheMac3.chr12 12789150 0 - 106825570 C e equCab2.chr6 66878114 0 - 84719076 C e tarSyr1.scaffold_175677 885 851 - 3989 T e hg19.chr2 12096221 4 - 243199373 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29191940 10 - 121549591 I a score=300.000000 s mm10.chr1_GL456221_random 57861 3 + 206961 ggc s dipOrd1.scaffold_118384 714 3 - 4161 GGC i dipOrd1.scaffold_118384 C 0 I 2330 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH490333 11015 453 + 53618 I e rheMac3.chr12 12789150 0 - 106825570 C e equCab2.chr6 66878114 0 - 84719076 C e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2825009 0 - 6458163 C e gorGor3.chr2B 12196284 0 - 131632457 C e panTro4.chr2B 12033963 0 - 247518478 C e hg19.chr2 12096221 4 - 243199373 I e calJac3.chr6 11696940 0 - 158406734 C e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29191940 10 - 121549591 I a score=-25.000000 s mm10.chr1_GL456221_random 57864 21 + 206961 atggtggcacacgcctttaat s rheMac3.chr12 12789150 5 - 106825570 ----------------ttaat i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH490333 11015 453 + 53618 I e equCab2.chr6 66878114 0 - 84719076 C e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2825009 0 - 6458163 C e gorGor3.chr2B 12196284 0 - 131632457 C e panTro4.chr2B 12033963 0 - 247518478 C e hg19.chr2 12096221 4 - 243199373 I e calJac3.chr6 11696940 0 - 158406734 C e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29191940 10 - 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 57885 124 + 206961 cccagcactcgggaggaagaggcaggcggatttctgagtttgaggccagcctggtctacagagtgagctccaggacagccagagctatacagagaaatcctgtctcaaaaaaaaaaaaAAAAAA e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e speTri2.JH393335 4143424 5375 - 10418462 T e turTru2.JH490333 11015 453 + 53618 I e rheMac3.chr12 12789155 0 - 106825570 C e equCab2.chr6 66878114 0 - 84719076 C e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2825009 0 - 6458163 C e gorGor3.chr2B 12196284 0 - 131632457 C e panTro4.chr2B 12033963 0 - 247518478 C e hg19.chr2 12096221 4 - 243199373 I e calJac3.chr6 11696940 0 - 158406734 C e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29191940 10 - 121549591 I a score=182.000000 s mm10.chr1_GL456221_random 58009 2 + 206961 AA s speTri2.JH393335 6300363 2 + 10418462 AA i speTri2.JH393335 n 5375 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e turTru2.JH490333 11015 453 + 53618 I e rheMac3.chr12 12789155 0 - 106825570 C e equCab2.chr6 66878114 0 - 84719076 C e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2825009 0 - 6458163 C e gorGor3.chr2B 12196284 0 - 131632457 C e panTro4.chr2B 12033963 0 - 247518478 C e hg19.chr2 12096221 4 - 243199373 I e calJac3.chr6 11696940 0 - 158406734 C e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29191940 10 - 121549591 I a score=-951.000000 s mm10.chr1_GL456221_random 58011 1 + 206961 -A s speTri2.JH393335 6300365 1 + 10418462 -G i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096225 1 - 243199373 c- i hg19.chr2 I 4 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e turTru2.JH490333 11015 453 + 53618 I e rheMac3.chr12 12789155 0 - 106825570 C e equCab2.chr6 66878114 0 - 84719076 C e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2825009 0 - 6458163 C e gorGor3.chr2B 12196284 0 - 131632457 C e panTro4.chr2B 12033963 0 - 247518478 C e calJac3.chr6 11696940 0 - 158406734 C e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29191940 10 - 121549591 I a score=180.000000 s mm10.chr1_GL456221_random 58012 1 + 206961 A s rn5.chr9 29191950 1 - 121549591 g i rn5.chr9 I 10 C 0 s speTri2.JH393335 6300366 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096226 1 - 243199373 a i hg19.chr2 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e turTru2.JH490333 11015 453 + 53618 I e rheMac3.chr12 12789155 0 - 106825570 C e equCab2.chr6 66878114 0 - 84719076 C e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2825009 0 - 6458163 C e gorGor3.chr2B 12196284 0 - 131632457 C e panTro4.chr2B 12033963 0 - 247518478 C e calJac3.chr6 11696940 0 - 158406734 C e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1273.000000 s mm10.chr1_GL456221_random 58013 2 + 206961 AA s rn5.chr9 29191951 2 - 121549591 aa i rn5.chr9 C 0 C 0 s speTri2.JH393335 6300367 2 + 10418462 GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096227 1 - 243199373 -a i hg19.chr2 C 0 I 1 s panTro4.chr2B 12033963 1 - 247518478 -a i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12196284 1 - 131632457 -a i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2825009 1 - 6458163 -a i nomLeu2.GL397366 C 0 I 1 s calJac3.chr6 11696940 1 - 158406734 -a i calJac3.chr6 C 0 I 1 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e turTru2.JH490333 11015 453 + 53618 I e rheMac3.chr12 12789155 0 - 106825570 C e equCab2.chr6 66878114 0 - 84719076 C e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=21636.000000 s mm10.chr1_GL456221_random 58015 17 + 206961 GAATGAAATGAAATTGT----- s rn5.chr9 29191953 17 - 121549591 taaatgaatgaaATTGT----- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6300369 17 + 10418462 GAATGACGGGTGACTGG----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096229 12 - 243199373 -----gaatgaaATGGG----- i hg19.chr2 I 1 C 0 s panTro4.chr2B 12033965 12 - 247518478 -----gaatgaaATGGG----- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12196286 12 - 131632457 -----gaatgaaATGGG----- i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2825011 12 - 6458163 -----gaatgaaATGGG----- i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12789155 12 - 106825570 -----gaatgaaATGGG----- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11696942 12 - 158406734 -----gaatgaaATGGG----- i calJac3.chr6 I 1 C 0 s equCab2.chr6 66878114 17 - 84719076 -----AAACGAAATGGACTTGA i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e turTru2.JH490333 11015 453 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1888.000000 s mm10.chr1_GL456221_random 58032 1 + 206961 C s rn5.chr9 29191970 1 - 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6300386 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096241 1 - 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 12033977 1 - 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196298 1 - 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825023 1 - 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789167 1 - 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11696954 1 - 158406734 C i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e turTru2.JH490333 11015 453 + 53618 I e equCab2.chr6 66878131 1 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=581231.000000 s mm10.chr1_GL456221_random 58033 213 + 206961 TTTCCATCCCTGAAGCAGGTGAGAGCTATAGTTACCATTTAGGAAGAAGTGTTTTAGAGTCTCCTTTAAGTCAGGGTAGGCCTTCAGATGTGTTTTGCTGAATATCACTTTCAGAAGATCCCGGCTAAACTTCTTCTGTACATTGCTGAGGATGTCGTACACGACTCTCTCCACTGGGAGCAGGTTCCTACATGTTTCTTGATATTCCTT-AAA s rn5.chr9 29191971 210 - 121549591 TTTCATTCCCTGAAGCAGGTGAGAGCTATAGTTACCACTTAGGAAG---TGTTTTAGAATCTCCTGTAAGTCAGGGTAGGCCTTCAGATGCACGTTGCTGAATATCACTTTCAGAAGATCCCGGCTAAACTTCTTCTGTATGTCACTGAGGATGTCATACACCACTCTGTCCACTGGAACCAGGTTCTTACATGTTTCTTGACATTCCTT-AAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6300387 210 + 10418462 CTTGAACCCCAAACCCCACTGAGAGCTTTTGTTACCATTTAGGAAG---CTTCTGGAAATCTCCACCAAGTCTGGGTAGGCCGTCAGATTGGTGCGGCTGAACAGTTCGTCCAGAAGCGACAGGCTGAAGGTCCTCTCCAGCTCACTGAGGACGGTGTACACCACTGCGTTCACGGGGACCAGGTTTCTACAGGCTTCTTGAAGATGCTG-GAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096242 211 - 243199373 TTGAATCCCCCAAAGCTGTTGAGAGCTATAGTTACCATTCTGGAAG---CTTCTGTAAATCTCGTTTAAATCAGGATAGGCCATCAGGTTAATCCTGCTGAACAATGCTTCCAGATGTGACCAGCCAAATGTCTTCTCCAGTTCACTGAGTACACAATACATCACTCTTGTCACTGGGACCAGGTTTCTAAAAGCTTCTTGAAAATGCTTAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12033978 211 - 247518478 TTGAATCCCCCAAAGCTGTTGAGAGCTATAGTTACCATTTTGGAAG---CTTCTGTAAATCTCGTTTAAATCAGGATAGGCCATCAGGTTAATCCTGCTGAACAATGCTTCCAGATGTGACCAGCCAAATGTCTTCTCCAGTTCACTGAGTACACAATACATCACTCTTGTCACTGGGACCAGGTTTCTAAAAGCTTCTTGAAAATGCTTAAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196299 211 - 131632457 TTGAATCCCCCAAAGCTGTTGAGAGCTATAGTTACCATTCTGGAAG---CTTCTGTAAATCTGGTTTAAATCAGGATAGGCCATCAGGTTAATCCTGCTGAACAATGCTTCCAGATGTGACCAGCCAAATGTCTTCTCCAGTTCACTGAGTACACAATACATCACTCTTGTCACTGGGACCAGGTTTCTAAAAGCTTCTTGAAAATGCTTAAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825024 211 - 6458163 TTGAATCCCCCAAAGCTGTTGAGAGCTATAGTTACCATTTTGGAAG---CTTCTATAAATCTCGTTTAAATCAGGATAGGCCATCAGGTTAATCCTGCTGAACACTGCTTCCAGATGTGACCAGCCAAATGTCTTCTCCAGTTCACTGAGTACACAATACATCACTCTTGTCACTGGGACCAGGTTTCTAAAAGCTTCTTGAAAATGCTTAAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789168 211 - 106825570 TTGAATCCCCCAAAGCTGTTGAGAGCTATAGTTACCATTTTGGAAG---CTTCTATAAATCTCGTTTAAATCAGGATAGGCCATCAGGTTAATCCTGCTGAACAATGCTTCCAGATGTGACCAGCCAAACGTCTTCTCCAGTTCACTGAGTACACAATACATCACTCTTGTCACTGGGACCAGGTTTCTAAAAGCTTCTTGAAAATGCTTAAAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11696955 211 - 158406734 TTGAATCCCCCAAAACTGTTGAGAACTATAGTTACCATTTTGGAAG---CTTCTGTAAATTTCGTTTAAATCAGGATAGGCCATCAGGTTAACCCTGCTGAACAACGCTTCCAGATGTGACCAGCCAAACGTCTTCTCCAGTTCACTGAGTGCACGGTACATCACTCTTGCCACTGGAACCAGGTTTCTAAAAGCTTCTTGAAAATGCTTAAAA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66878132 207 - 84719076 ----TCCCCCAAAAGTTGTTGAAAGCTATAGTTACCATCTTGGAAG---TTTCTTAAAATCTCAATTAAATCAGGATAGGCCTTCAGGTTAACCTTGCTGAATAGGGCATCCAGAACTTTCTTGTCAAACTTCTTCTCCAGTTCACTGAGAACATCATATACCACTCTCTCCACCGGGACCAGATTTCTACAAGCTTCTCGAAAATCCTTTAAA i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e turTru2.JH490333 11015 453 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2818.000000 s mm10.chr1_GL456221_random 58246 1 + 206961 G s rn5.chr9 29192181 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6300597 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096453 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034189 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196510 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825235 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789379 1 - 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11697166 1 - 158406734 A i calJac3.chr6 C 0 C 0 s equCab2.chr6 66878339 1 - 84719076 A i equCab2.chr6 C 0 C 0 s proCap1.scaffold_11117 37303 1 - 44248 G i proCap1.scaffold_11117 N 0 N 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e turTru2.JH490333 11015 453 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=313578.000000 s mm10.chr1_GL456221_random 58247 140 + 206961 TAGTGAATGCAGAATTGTGTCATGATGGATTTATGGGTTATATGAGG---CTTACATTGGTTCAAACACCATTTCTCTTTTTTTGTAAAATGTCT-GAGTTTTGCAAATACCGAGGTGACATCTTACATGTCCTCTG---T-ACTAAC s rn5.chr9 29192182 138 - 121549591 TATTGAATACAGGATTATGTCATGATGGTTGTATGGGTTAT-TGAGG---CTTCGATTGGTTCAAGCACCATTTCT--TTTCTCGTAAAATGTCTTGAGTTTTGCAAATGCCAAGGTGACGTCTTACATGTCCTCTG---T-ACAAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6300598 128 + 10418462 ACGTGGAATGAGAATCCTGTCACTGTGGATTTGTGGATTAC-CGAAGACTCTTAGGTGGGTGCCTAGACCGTTCCT--CCTCTCGTGAATTGCAA-GTATTTTGCATGTTT---GGAGACTTCTTACA------------T-AAAAAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096454 142 - 243199373 TATTAAATGGAGAATTATGTAGCTAGAGATTTATGGGTTAC-AAAAGACTTTTAGGTT-GTAGATAGAACATCTGT--TCTCTTGTGAAATGTTA-GAATTTTGCGTATATTTGGATGACTTCTTAAATGTCCTCCACCAT-AAAAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034190 142 - 247518478 TATTAAATGGAGAATTATGTAGCTAGAGATTTATGGGTTAC-AAAAGACTCTTAGGTT-GTAGATAGAACATCTGT--TCTCTTGTGAAATGTTA-GAATTTTGCGTATATTTGGATGACTTCTTAAATGTCCTCCACCAT-AAAAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196511 142 - 131632457 TATTAAATGGAGAATTATGTAGCTAGAGATTTATGGGTTAC-AAAAGACTCTCAGATT-GTAGATAGAACATCTGT--TCTCTTGTGAAATGTTA-GAATTTTGTGTATATTTGGATGACTTCTTAAATGTCCTCCACCAT-AAAAAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825236 143 - 6458163 TATTAAATGGAGAATTATGTAGCTAGAGATTTATGGGTTAC-AAAAGACTCTCAGGTT-GTAGATAGAACATCTAT--TCTCTTGTGAAATGTTA-GAATTTTGCATATATTTGGATGACTTCTTAAATGTCCTCCACCATAAAAAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789380 142 - 106825570 TATTAAATGGAGAATTATGTAGTTAGAGATTTATGGGTTCC-AAAAGACTCTTAGGTG-GTAGATAGAACATCTGT--TCTCTTGTGAAATGCTA-GAATTTTGCATATATTTGGATGACTTCTTAAATGTCCTCCACCAT-AAAAAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11697167 142 - 158406734 TATTAAATGGAGAATTATGTAGTTAGAGATTTGTGGGTTAT-AAAAGACTTGTAGGTT-GGAGATAGAACATCTGT--TCTCTTGTGAAATATGA-GAATTTTGCATATATTTGGATGACTTCTTAAATGTCCTCTGCCAT-AAAAAT i calJac3.chr6 C 0 C 0 s equCab2.chr6 66878340 140 - 84719076 TATTGAATGGAGAATTAGGTAGCTATGGATTTACAGGTTAT-AGAAGA--CTCAGATT-GTAGATAGATCATTTGT--TCTCTTCTGAAATGTTA-GAATGTTACATATATTCTGATTACTTCTTAAATAGCCTCCGCCAT-AAAAAC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e turTru2.JH490333 11015 453 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=11062.000000 s mm10.chr1_GL456221_random 58387 5 + 206961 AGACC s rn5.chr9 29192320 5 - 121549591 AAACC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6300726 5 + 10418462 AGTCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096596 5 - 243199373 ACACT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034332 5 - 247518478 ACACT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196653 5 - 131632457 ACACT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825379 5 - 6458163 ACACT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789522 5 - 106825570 ACAGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11697309 5 - 158406734 ACACT i calJac3.chr6 C 0 C 0 s turTru2.JH490333 11468 5 + 53618 AGACT i turTru2.JH490333 I 453 I 207 s equCab2.chr6 66878480 5 - 84719076 AGATT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=312682.000000 s mm10.chr1_GL456221_random 58392 178 + 206961 C-TAGCTCATCTGAAA--GAAGCTCTGATGCTGACAAATAGTAGACAGGGAAGAGAGGGTTTGATGAATAA--------------TTAAATGATATGT-----CTGTAAAAGCCAG-------------------GCCCTAACAGACCATGAGTGGCA-------------------------GCCTTGGGGTCCAGACAATTAAC--------TCCCCAAGGACTGAGCT--TGTCTGAA-GAGCTTG--------AG--------------CATA s rn5.chr9 29192325 204 - 121549591 C-CTGCTCATCTGAAA--GCAGCTCTGATGCTGACAAACAGTAGACAGGGAAGAGAAAATTTGAGGAATAA--------------TCAAATGATATGT-----CTGTAAGAGCCAG-------------------GCCCTCCCAGACCCTGAGTGGTACCAG-------GCAGGACCTTGGGGACCTTGGGGATCAGACAACTAAC--------TCCCTAAAGACTGAGCT--GCTCTAAA-GGGCTGGCAGCAACCAA--------------GTGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6300731 232 + 10418462 C-TTGGCTTT--------GGGACCCTGA--CTCGCTGAGAGTTGAGAGG--AGAGCCGTTTTGAAGAATAAAAGTGTGTCCAAAGTCAAATGTTGTAT-GGGGCTCTAAGAGCCAGATTGCGGGGGGTGGGGGGTGTCCT-ATAGACCATGAGAAGAT-------------------------GTTCTGGCGATTGGACAATGACCGCTGCTCTGCCCCCAGGACTGGACT--GGCCCGAA-AGCCTCCTAGAAACCAGGGATCACCC--TCTCCTA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096601 225 - 243199373 C-TAATTTTT-TGAACCTGACTCTCTGACATTGTTGTACACTTAAGGGGAGAGAGTAATTTTAAATAATAAGTGTGGGTTCAAAGTTGAATGTTGTGT-ATGGCTTT-AGAGCCTG-------------------GCCAGGTTATTTCAGGAGTGGCCTTAA--------CAAGGCT------GTTCTGTTGCATGGACAATAACC--------ACTACTAGGATTGGCCT--GGCCTGAC-GAGCTCCAGGAAACCAA---TCAACCAGCCCCC-A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034337 226 - 247518478 C-TAATTTTT-TTAACCTGACTCTCTGACATTGTTGTACACTTAAGGGGAGAGAGTAATTTTAAATAATAAATGTGGGTTCAAAGTTGAATGTTGTGT-ATGGCTTT-AGAGCCTG-------------------GCCAGGTTATTTCAGGAGTGGCCTTAA--------CAAGGCT------GTTCTGTTGCATGGACAATAACC--------ACTACTAGGATTGGCCT--GGCCTGAC-GAGCTCCAGGAAACCAA---TCAACCAGCCCCCTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196658 226 - 131632457 C-TAATTTTT-TGAACCTGACTCTCTGACATTGTTGTACACTTAAGGGGAGAGAGTAATTTTAAATAATAAATGTGGGTTCAAAGTTGAATGTTGTGT-ATGGCTTT-AGAGCCTG-------------------GCCAGGTTATTTCAGGAGTGGCCTTAA--------CAAGGCT------GTTCTGTTGCATGGACAATAACC--------ACTGCTAGGATTGGCCT--GGCCTGAC-GAGCTCCAGGAAACCAA---TCAACCAGCCCCCTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825384 226 - 6458163 C-TAATTTTT-TGAACCTGACTTTCTGACATTGTTGTACACTTAAGAGGAGAGAGTAATTTTAAACAATAAATGTGGGTTCAAAGTTGAATGTTGTGT-GTGGCTTT-AAAGCCTG-------------------GTCAGGTTATTTCAGGAGTGGCCTTAA--------CAAGGCT------GTTCTGTTGTGTGGACAATAACC--------ACTACTAGGATTGGCCT--GGCCTGAC-GAGCTCCAGGAAACCAA---TCAACCAGCCCCCTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789527 228 - 106825570 CTTAATTTTT-TGAACCTGACTCTCTGACATTGTTGTACACTTAAGAGGAGAGAGTTATTTTAAATAATAAATGTGGGTTCAAAGTTGAATGTTATGT-GTGGCTTT-AGAGCCTG-------------------GCCAGGTTATTTCAGGAGTGGCCTTAA--------CAAGGCT------GTTCTGTTATGTGGATGATAACC--------ACTACTAGGATTGGCCT--GGCCTGACAGAGCTCCAGGAAACCAA---TCAACCAGCCCCCTA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11697314 214 - 158406734 C-TAATTTTT-TGAACCTGACTCTCTGACATTGTTGTACACTTGAGAGGAGAGA------------------TGTGGGTTCAAACTCGAATGTTGTGT-GGGGCTTT-AGAGCCTG-------------------GCCAGGTTACTTCACAAGTGGCCTTAA--GTCATGAGAGGCC------ATTCTGTTGTGTGGATAATAACC--------ATTACTGGGATTGTCCT--GGCCTGAC-TGGCTCCAGGAAACCAA---TCAACTAGCCCCCTA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66878485 205 - 84719076 C-TTATTTTG-TGAAGCTGACTCTCTGACATTGATGTACACTTGAG-----AGAGCAACTTTGAAGAATAAAATTGGGTTCAGAGTTGAATGTTGTGTGGGGGCTTTAAGAGCCTG-------------------GCCAGGATGCCTTAAGAGTGGTCCTGACTGGTATGAGGGGCC------ATTTTGTTGACTAGATGATAATC-----------------ACTGGCCTCCTGCCTGAA-GGGCTCCAGGAAA---------------------- i equCab2.chr6 C 0 I 13 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e turTru2.JH490333 11473 207 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-3069.000000 s mm10.chr1_GL456221_random 58570 6 + 206961 GC----ATCC-- s rn5.chr9 29192529 6 - 121549591 GC----ATCC-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6300963 9 + 10418462 GTGTG-ATCC-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096826 10 - 243199373 CTATGACTCC-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034563 10 - 247518478 CTATGACTCT-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196884 10 - 131632457 CTATGACTCC-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825610 10 - 6458163 CTGTGACGCC-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789755 10 - 106825570 CTGTGACTCC-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11697528 10 - 158406734 CGGTGACTCC-- i calJac3.chr6 C 0 C 0 s turTru2.JH490333 11680 6 + 53618 ------CTCTCC i turTru2.JH490333 I 207 I 5425 s equCab2.chr6 66878703 6 - 84719076 ------CTCCCC i equCab2.chr6 I 13 I 11 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=472905.000000 s mm10.chr1_GL456221_random 58576 198 + 206961 TAGCCACAGGGCAAAGAGAATGCATAAAGAAGAAAAG-------GTCTTTGTTATCACCGCAG--ATCCCATCACTGACCTGTACCTCTCATTCTAGGGCTTCAGAGTTGCCTGAAGAACCAGGAACAACTTGAAGATAGAGAAGCAAACAGGACTCCCCGAGTTCTGTCCTCACATGACCCAACTG-CCTCTGGCT-------------------CTGGGATTTGG s rn5.chr9 29192535 216 - 121549591 TAGCCACAGGGCAAAGAGAATGCATAAAGAAGAAAAG-------GTCTTTGTTACCACCAGGGGAATCCCATCACTGACCTTTTACTA-CAGTCTAGGGCTTCAGAGGTGACTGAGGAGCCAGGAACAACTTGAAGAAAGAGAAGTAAACAGGACTCCCCAAGTTCTGTCCTCAGATAATGCAACTA-CCTGTGACTTTC--AAAGCCCTCAGACTCTGGGATATGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6300972 206 + 10418462 TAGCCAAATGACAAGGAACGATTCTAAGACAAAGAGGCAG-CTTGTCCTCAGCATCCCCAGGG-AGACCCAGTGCTAACCC--------TAACCTGGAGCTCCAGAAATGTCTAAAGAACAGAAAATGACTTGGACAGAGAACGGCAAGCGTCTGTTTCCAAATT-TATTCTAAAGTTGC--------CCTGTGAGTTGC--AAAAATCTCATGCTCCAGGGTTAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12096836 224 - 243199373 TGGCCAAAGGGCACAGAAAATTCACAAAGACAAGAAGAAGCCTTGTCCTCAGTATCCCTAAGG-GCATCCACTGCTAACATTAACTTG-CATTCTAGGGCTCTAGAAATGTCCAAAGATCAAACAATGATTTGGAGAGACAGTAGCAAGCATCCACTTCCAAATG-TAACCTAAAATGACACAACTTCACTGTGAGTTTCAAAAAAATCTCAGTTTCAAGTGTTTCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034573 224 - 247518478 TGGCCAAAGGGCACAGAAAATTCACAAAGACAAGAAGAAGGCTTGTCCTCAGTATCCCTAAGG-GCATCCACTGCTAACATTAACTTG-CATTCTAGGGCTCTAGAAATGTACAAAGATCAAACAATGATTTGGAGAGACAGTAGCAAGCATCCACTTCCAAATA-TAACCTAACATGACACAACTTCACTGTGAGTTTCAAAAAAATCTCAGTTTCAAGTGTTTCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12196894 224 - 131632457 TGGCCAAAGGGCACAGAAAATTCACAAAGACAAGAAGAAGGCTTGTCCTCAGTATCCCTAAGG-GCATCCACTGCTAACATTAACTTG-CATTCTAGGGCTCTAGAAATGTCCAAAGATCAAACAATGATTTGGCGAGACAGTAGCAAGCATCCACTTCCAAATG-TAACCTAACATGACACAACTTCACTGTGAGTTTCAAAAAAATCTCAGTTTCAAGTGTTTCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825620 220 - 6458163 TGGCCAAAGGGCACAGAAAATTCACAAAGAC---AAGAAGGCTTGTCCTCAGTATCCCTAAGG-GCATCCACTGCTAACATTAACTTG-CATTCTAGGGCTCTAGAAATGTCCAAAGATCAAACAACAATTTGGAGAGACAGTAGCAAGCATCCACTTCCAAATG-TAACCTAACATGACACAACTTCCCTGTGAGTTTC-AAAAAATCTCAGTTTCAAGTGTTTCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789765 224 - 106825570 TGATCAAAGGGCACAGAAAATTCACAAAGACAAGAAGAAGGCTTGTCCTCAGTATCCCTAAAG-GCATCCACTGCTAACATTAACTTG-CATTCTAGGGCTCTAGAAATGTCCAAAGATCAAACAATGATTTGGAGAGACAGTAGCAAGCATCTGCTTCCAAATG-TAAAATAACATGACACAACTTCCCCGTGAGTTTCAAAAAAATCTCTGTTTCAAGTGTTTCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11697538 221 - 158406734 TGGCCAAAGGGCACAGAAAATTCACAAAGACAAGAAGAAGGCTTGTCCTCAGTAGCCCTAAGG-GCATCCACTGCTAACATATACTTG-CATTCTGGGGCTCTAGAAATGTCCAGAAATCAAACAATGATTTGGAGAGAGAGTAGCAAACATCTACTTCCAAATA-TATCCTAACATGACACACCTTCCCTGTGAGTTTC--AAAAATCTCAG-GCCAAGTGTTTCA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66878720 222 - 84719076 TGGCCAAAGGGCAAAGAAAGTCCACAAAAACAAAGAGAAACCTTGTCCTCAGCATCCCCAGGA-AGACCTCCCACTAAACTTTACCTG-CATTCCAGGGCTTCAGAAATGTCTAAAGAACAAGAAACAATTTGGAGAGAGAGCAGCAAGCATCTGCTTCCAAATT-TATCCTAACGTGGCACAACTTCTCTATGAGTTTC--AATAATCTCAGGCTCAAGTGTATAA i equCab2.chr6 I 11 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e dipOrd1.scaffold_118384 717 2330 - 4161 I e turTru2.JH490333 11686 5425 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=41661.000000 s mm10.chr1_GL456221_random 58774 15 + 206961 AGTAAGTAGGCTTTG s rn5.chr9 29192751 15 - 121549591 AATAAATAGGCTTTG i rn5.chr9 C 0 I 332 s dipOrd1.scaffold_118384 3047 14 - 4161 AATAAGT-GACTTTG i dipOrd1.scaffold_118384 I 2330 C 0 s speTri2.JH393335 6301178 10 + 10418462 ----AGAGGGCCTG- i speTri2.JH393335 C 0 I 1 s hg19.chr2 12097060 15 - 243199373 AATAAGTAGGCTTTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034797 15 - 247518478 GATAAGTAGGCTTTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12197118 15 - 131632457 AATAAGTAGGCTTTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825840 15 - 6458163 AATAAGTAGGCTTTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12789989 14 - 106825570 -ATAAGTAGGCTTTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11697759 15 - 158406734 ACTAAGTAGGTTTTA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66878942 15 - 84719076 AATGAGAGGGCTTTG i equCab2.chr6 C 0 I 5 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 11686 5425 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-589.000000 s mm10.chr1_GL456221_random 58789 1 + 206961 G s dipOrd1.scaffold_118384 3061 1 - 4161 T i dipOrd1.scaffold_118384 C 0 C 0 s hg19.chr2 12097075 1 - 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034812 1 - 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12197133 1 - 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825855 1 - 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12790003 1 - 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11697774 1 - 158406734 T i calJac3.chr6 C 0 C 0 s equCab2.chr6 66878962 1 - 84719076 G i equCab2.chr6 I 5 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301188 1 + 10418462 I e turTru2.JH490333 11686 5425 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29192766 332 - 121549591 I a score=25940.000000 s mm10.chr1_GL456221_random 58790 14 + 206961 AAGGCAGCCCAGCT s rn5.chr9 29193098 14 - 121549591 AAGGCAGTGCTGCT i rn5.chr9 I 332 C 0 s dipOrd1.scaffold_118384 3062 14 - 4161 AAACACACACAGTT i dipOrd1.scaffold_118384 C 0 C 0 s speTri2.JH393335 6301189 14 + 10418462 AATGAAGCAGTGCT i speTri2.JH393335 I 1 C 0 s hg19.chr2 12097076 14 - 243199373 AATAAAATGCTGCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034813 14 - 247518478 AATAAAATGCTGCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12197134 14 - 131632457 AATAAAACTCTGCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825856 14 - 6458163 AATGGAACGCTGCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12790004 14 - 106825570 AATGAAACGCTGCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11697775 14 - 158406734 AATGAAATGTTGCT i calJac3.chr6 C 0 C 0 s equCab2.chr6 66878963 14 - 84719076 AATGTAGCCTGGCT i equCab2.chr6 C 0 I 215 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 11686 5425 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1312688.000000 s mm10.chr1_GL456221_random 58804 550 + 206961 TAGGT-------------------------------------------------------------------------------------GTGTCTACTTGCATCCTAGTATCTGTTGTTACATTACACAAGTGACCCTGGGATGCTCTGC-ACTTCGGAGCATTCCTGCTTGCTATTCGTCGCT-----GTCACCATGTGCCTCAG-------------CCTCAGTTACTGCAGAGGTGAATGTAAATGGTT--CCTGTGATGTCTATCCCTCCAGTTATCTTCTGACTTACAA-A-GGTGATGTCCCTTCATCCCTGGAGGTG---CTTCAGCCTGTTGGCTACACCCAGAAGTACAGCATGATACAGCACAGGGCAGGCTTGCTGTCAGGACTGAGTTCATTCTCCACACTCACCTGAAACTTCTGCTCCGAGATGAAGTCTCGGTCTCGAAGGCTCATGAGGAAAGGAAACGGCTTGGTGATGGCACTTGCGATCTCCACCTTGTTTTCTTTGAAGTGCTTGAACATGAGCTGATAGTTATCTGACT---------------CCTCTTCATTCT---------------GGTCCTCTGGGATTGTCCTAGGGGACA--GATTCCATGCAGAAGTAGATACTGGTTTA-CAAGATGC-TACCAATGGCTG--GATAATTACTGACATGAAGACT s rn5.chr9 29193112 535 - 121549591 TAGAT-------------------------------------------------------------------------------------GTGTCTATGTGCATCCTGGTTTCTGTTGTTACATTGCACGAGTGACCCTGGTATGC------ACTTTGGAGCATTCCTGTTTGCTATCCATCACT-----GTCACCATGTGCCTCAG-------------------TTACTGCAGAAG---ATGTAAATGGTC--CTTGTGACATCTGCCTCTCTGGTTATCTTCTGACTTACAAGA-AGTGAAGCTCCCTCCTCCCTGAAAGCA---CTTCAGCCTGTTGGCTGCACC-ACAGGTTCAGCATGATACAGCACGGGGCAGGCTTGCTGTCAGGACTGAGTTCATTCCCCACACTCACCTGATACTTCTGCTCCGAGATGAAGTCTCGGTCTCGAAGGCTCATGAGGAAAGGAAATAGCTTGGTGATGGCACTTGCAATCTCCACCTTGTTTTCTTTGAAGAGCTTGAACATTAGCTGATAGTCATCTGACT---------------GCTCTCCATTCT---------------GGTTTTCTGGGATCATCCTAAGGGATA--GATTCCATGCAGAATT-GATACCAGTTTA-CAAGACGC-CACCAATAGCTG--GATAATTTCTGACACAAAGGAT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_118384 3076 493 - 4161 TGGAT-------------------------------------------------------------------------------------TTATTT-----CCTTTTAGCTTATATTGGTATATCAT-TAAGCAAACTAGAGAGACT-----CCTATGATGTAATCCCAGTTCCCATTCTGCCCG-----GATACC---TCCCCTGGTA----ACTCTCTCCACAATTACTGCAGGAA-------AAGCGGGCATCCTGGAAGGCCTGCTCTTCCCTTCACCTTCCAATTTACAGGA-TGTGAAGGTCCCCACTCACAGGGAACTCCCCTCCAGCCCAT-----------------------------------GGGCTGGCTTCCCATCACAAAGGAATT-AT------CGCTTACTTTATACATCTGTTCAGAGATGAAGGCACGGTCCCGGAGGCTCATGAGGAAAGGGAATGGACTCGTCACCGCACTGGCAATCTCCACCTTATTTTCTCTGAAGTACCTGAAAATGGGATCA------------T---------------CCTCCATATCCT---------------GCTCCTCTGCGGCCATCCTAAGAAACAGTGATACCCGGTGAGATA-GGTAGTGAGCTT-CTAAATGCTTCCCAGTGACTC--AATAATTATAAATAGGAAGTCt i dipOrd1.scaffold_118384 C 0 N 0 s speTri2.JH393335 6301203 513 + 10418462 GGGGT-------------------------------------------------------------------------------------CCCTTAATCTACCT-TTAGTTTGCGTTAGTAT-TTGCATAAA-GTACCTAAGATGCTCTGC-ACTAGGAAGTATTCCTGCTCCCCAGCCTGCCCTCTCCCATCACC----TCCCCAC-------------TAACAGTTACTGCAGAAA---AAG-CAATATTT--TCTGTGATGCCTGCTTCTCCCACTGCCTCCCG----ACAGGATGGCAAAGGTCCCCA----------------TTGCCACCCG--------------AAGTCTGACATCATGCAGTGTGGGGCTGGTTTCCGGTCCTGAGGAA----ATTCCCCTGACTTACGTCGAACATCTGCTCAGAGATGAAGGCGCGGTCTCGGAGGCTCATGAGGAAAGGAAACAGCTTGGTTATTGCACTCGCAATCTCCACCTTGTTTTCTTTGAAATGCCTGAAAAGGTGTTCATGCAAAAACTGCT---------------CCTCTCTGTTCTCGAACTCCATCCTGGGGAGCTCTGTGGCCACCCTACGAAACAAAGATAC-------GACA-GATACTGAGCT-----------TCCAAGAGGCTGGTGATGACTTTAGACATGCAGGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12097090 570 - 243199373 TAGGT----------------------------------------------------------------------------------CACTTATTTATTTTAATTATGGCTACCATTAGTAGATTGTTTACAAGTACCTAGGATGATCTGCACCCATACAGCATTCCCATTCTCTCTCCTGCCCC--------ACC---TCCCTCACTGTGGCCCTCCCCCAACATTTACTACAGAAG---AAG-GGAGGTTT--TCTGTGATGCCTGCTTCTCCTGTCACCTCCTAACCTACAGAATGGTGAAGGTCCCCACTCACAGGAGGCC---CTTTAGCCTGCTCATTGCATCTTGAAGTTTGGCATAATTGAGTATGGACCTGGTTTATCATCATTTGGAA----ATTCT---TACTTACTTCATACATCTGCTCGGAGATGAAGGAGCGGTCTCGGAGGCCCATAAGGAAAGGAAATGGCCTTGTTATTGCACTTGCAATCTCCACCTTGTTTTCTCTGAAGAACCTGAAAATGGGCTCAGGGCAAACCTGCTCCTGCAGGTTCTGACCCTCTACGTTCT---------------GGATCTCTGCGACCATCCTAAGAAACAAAGATACAACGTGGAAGTAGACACTGAGTTTCCAAGAGGT-TTGTGGTGGTTa--gaagattttagacatgaaggat i hg19.chr2 C 0 C 0 s panTro4.chr2B 12034827 567 - 247518478 TAGGT----------------------------------------------------------------------------------CACTTATTTATTTTAATTATGGCTACCATTAGTAGATTGTTTACATGTACCTAGGATGATCTGCACCCATACAGCATTCCCATTCTCTCTCCTGCCCC--------ACC---TCCCTCACTGTGGCCCTCCCCCAACATTTACTACAGAAG---AAG-GGAGGTTT--TCTGTGATGCCTGCTTCTCCTGTCACCTCCTAACCTACAGAATGGTGAAGGTCCCCACTTACAGGAGGCC---CTTTAGCCTGCTCATTGCATCTTGAAGTTTGGCATAATTGAGTATGGACCTGGTTTATCATCATTTGGAA----ATTCT---TACTTACTTCATACATCTGCTCGGAGATGAAGGAGCGGTCTCGGAGGCCCATAAGGAAAGGAAATGGCCTTGTTATTGCACTTGCAATCTCCACCTTGTTTTCTCTGAAGAACCTGAAAATGGGCTCAGGGCAAACCTGCTCCTGCA---TCTGACCCTCTACGTTCT---------------GGATCTCTGCGACCATCCTAAGAAACAAAGATACAATGTGGAAGTAGACACTGAGTTTCCAAGAGGT-TTGTGGGGGTTa--gaagattttagacatgaaggat i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12197148 570 - 131632457 TAGGT----------------------------------------------------------------------------------CACTTATTTATTTCAATTATGGCTACCATTAGTAGATTGTTTACATGTACCTAGGATGATCTGTACCCATACAGCATTCCCATTCTCTCTCCTGCCCC--------ACC---TCCCTCACTGTGGCCCTCCCCCAACATTTGCTACAGAAG---AAG-GGAGGTTT--TCTGTGATGCCTGCTTCTCCTGTCACCTCCTAACCTACAGAATGGTGAAGGTCCCCACTCACAGGAGGCC---CTTTAGCCTGCTCATTGCATCTTGAAGTTTGGCATAATTGAGTATGGACCTGGTTTATCGTCATTTGGAA----ATTCT---TACTTACTTCATACATCTGCTCAGAGATGAAGGAGCGGTCTCGGAGGCCCATAAGGAAAGGAAATGGCCTTGTTATTGCACTTGCAATCTCCACCTTGTTTTCTCTGAAGAACCTGAAAATGGGCTCAGGGCAAACCTGCTCCTGCAGGTTCTGACCCTCTACGTTCT---------------GGATCTCTGCGACCATCCTAAGAAACAAAGATACAACGTGGAAGTAGACACTGAGTTTCCAAGAGGT-TTGTGGTGGTTA--AAAGATTTtagacatgaaggat i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2825870 566 - 6458163 TAGCT----------------------------------------------------------------------------------CAC----TTATTTTAATTATGGCTACCATTAGTAGATTGTATACATGTACCTAGGATGACCTGCACCCATACAACATTCCCATTCTCTCTCCTGCCCC--------ACC---TCCCTCACTGTGGCCCTCCCCCAACATTTACTACAGAAG---AAG-GGAGGTTT--TCTATGATGCCTGCTTCTCCTGTCACCTCCTAACCTATGGGATGGTGAAGGTCCCCACTCACAGGAGGCC---CTTTAGCCTGTTCATTGCATCTTGAAGTCTGGCATAATTGAGTATGGACCTGGTTTACCATCATTTGGAA----ATTCT---TACTTACTTCATACATCTGCTCAGAGATGAAGGAGCGGTCTCGGAGGCCCATAAGAAAAGGAAATGGCCTTGTTATTGCACTTGCAATCTCCACCTTGTGTTCTCTGAAGAACCTGAAAATGGGCTCAGGGCAAACCTGCTCCTGCAGGTTCTGACCCTCTACGTTCT---------------GGATCTCTGCGACCATCCTAAGAAACAAAGATACAACGTGGAAGTAGACACTGAGTTTCCAAGAGGT-TTGTGGTGGCTa--gaagattttagacatgaaggat i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12790018 569 - 106825570 TAGCT----------------------------------------------------------------------------------CACTTATTTACTTTAATTATGGCTACCATTAGTAGATTGCATACATGCACCTAGGATGATCTGCACCCATGCAGCATTCCCATTCTCTCTGCTG-CCC--------ACC---TCCCTCACTGTGGCCCTCCCCCAACATTTACTACAGAAG---AAG-GGAGGTTT--TCTGTGATGCCTGCTTCTCCTGTCACCTCCTAACCTACAGGATGATGAAGGTCCCCATTCACAGGAGGCC---CTTTAGCCTGTTCATTGCATCTTGAAGTTTGGCATAATTGAGTATGGACCTGGTTTACCATCATTTGGAA----ATTCT---TACTTACTTCATACATCTGCTCAGAGATGAAGGAGCGGTCTCGGAGGCCCATAAGGAAAGGAAATGGTCTTGTTATTGCACTTGCAATCTCTACCTTGTGTTCTCTGAAGAACCTGAAAATGGGCTCAGGGCAAACCTGCTCCTGCAGGTTCTGATCCTCTGTGTTCT---------------GTATATCTGTGACCATTCTAAGAAACAAAGATACAACGTGGAAATAGATACTGAGTTTCCAAGAGGT-TTGTGGTGGCTA--GAAGATTTTAGACATGAAGGAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11697789 558 - 158406734 GAGCT----------------------------------------------------------------------------------CACTTACATACTTTAATTTTGGCTATCAT---TAGATCGTATACGT-TACCTAGGACGAT-------CATACAGCATTCTCATTCTCTGTCCTGCCCC--------ACC---TCCCTCACCATGCCCCT-CCCCAACGTTTACTACAGAAG---AAC-GGATGTTT--TCTGTGATGCCTGCTTCTCCTATCACCTCCTAACTTACAGGATGGTGAAAGTCCCCACTCACAGGAGGCC---CTTCAGCCTGTTCATTGCATCTTGAAGTTTGGCATAATTGAGTGTGGACCTGGTTTACCATCATTTGGAA----ATTCT---TACTTACCTCATACATCTGCTCAGAGATGAAGGAGCGGTCTCGGAGGCCCATAAGGAAAGGAAATGGCCTTGTTATTGCACTTGCAATCTCCACCTTGTGTTCCCTGAAGAACCTGAAAATGGGCTCAGGGAAAACCTGCTCCTGCAGGTTCTGACCCTCTACGTTCT---------------GGATCTCTGTGACCATCCTAAGAAACGAAGATACAATGCGGAAATAGACACTGAGTTTCCGAGAGGT-TTGTGGCAGCTa--gaagattttagacatgaagggt i calJac3.chr6 C 0 C 0 s equCab2.chr6 66879192 647 - 84719076 taggtctgggcccaggatccaaaccagcgaaactctgggccgccgaagcagagtgtgtgaaattaaccacttggccacagggccagccccTTATTTACTTTATTTTTAGTTGTTGTTATTATATTGTAT-TATGTACCTAAGATGTTCTGTACCTATGTAGTATTCCCATTTCCAATCCTGCCAC--------ATC---TCCATCACCATGGCCCTCCACCAACATCTACTCCAGAAG---AAG-GAATGTTT--TCTGCGATGCC-ACTTCTCCTGTCAGCCACTAACTTGTAGGA-GGTGAAGGTCCCCACTCACTGGAGGCC---CTTTAGCCTATTTATGGCATCCTGAAGT-TGGCACAATATAGCATGGGGCTGGTT----AGCATGAGGAA----ATTCCCCTCACTTACTTCATACATCTGCTCAGGGATGAAGCCGCGGTCCCGGAGGCCCATAAGGAGAGGAAATGGCTTCGTTATTGCGCTTGCAATCTCCACCTTATTTTCTTTGAATAGCCTGAAAATGAGCTCAGAGAAAAACTGCTCCACAGAGTTCTGGTCCTCTGGATTCT---------------GGTCGCCTGGGAACATCCTGAGAAACAAAGATATGTTATGAAAGTAGACGTTGAGTTTCCAAGAGGC-TTGTGTTGGCTG--GAAGATTTTACACATGAAAGAT i equCab2.chr6 I 215 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 11686 5425 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=5118.000000 s mm10.chr1_GL456221_random 59354 4 + 206961 GGTC s rn5.chr9 29193647 4 - 121549591 AGTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6301716 4 + 10418462 GGTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12097660 1 - 243199373 g--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12035394 4 - 247518478 ggcc i panTro4.chr2B C 0 I 2950 s gorGor3.chr2B 12197718 4 - 131632457 ggcc i gorGor3.chr2B C 0 I 2954 s nomLeu2.GL397366 2826436 4 - 6458163 ggcc i nomLeu2.GL397366 C 0 I 4533 s rheMac3.chr12 12790587 4 - 106825570 GGCC i rheMac3.chr12 C 0 I 11730 s calJac3.chr6 11698347 4 - 158406734 ggtc i calJac3.chr6 C 0 I 11835 s equCab2.chr6 66879839 4 - 84719076 CGTC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 11686 5425 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-501.000000 s mm10.chr1_GL456221_random 59358 6 + 206961 TGCtaa s rn5.chr9 29193651 6 - 121549591 CGCTAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6301720 6 + 10418462 AGTTGA i speTri2.JH393335 C 0 I 2681 s hg19.chr2 12097661 5 - 243199373 -gccaa i hg19.chr2 C 0 C 0 s equCab2.chr6 66879843 2 - 84719076 AG---- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 11686 5425 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e gorGor3.chr2B 12197722 2954 - 131632457 I e panTro4.chr2B 12035398 2950 - 247518478 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3795.000000 s mm10.chr1_GL456221_random 59364 16 + 206961 tataaaattaaaattt s rn5.chr9 29193657 16 - 121549591 CGTAAAATTAAAATTT i rn5.chr9 C 0 C 0 s hg19.chr2 12097666 16 - 243199373 tggagagccaacatgt i hg19.chr2 C 0 I 58 s equCab2.chr6 66879845 16 - 84719076 TGGAGAACCAACATGT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 11686 5425 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e gorGor3.chr2B 12197722 2954 - 131632457 I e panTro4.chr2B 12035398 2950 - 247518478 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=975.000000 s mm10.chr1_GL456221_random 59380 6 + 206961 taaaCA s rn5.chr9 29193673 6 - 121549591 TAAACA i rn5.chr9 C 0 C 0 s equCab2.chr6 66879861 6 - 84719076 AAAATA i equCab2.chr6 C 0 I 2705 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 11686 5425 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e gorGor3.chr2B 12197722 2954 - 131632457 I e panTro4.chr2B 12035398 2950 - 247518478 I e hg19.chr2 12097682 58 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=9134.000000 s mm10.chr1_GL456221_random 59386 181 + 206961 TCTCATTTAGTGATCAAGTTCTGGTGCTTTGAGtttgatttgctcgggacagggttatcatctgtaagtctggcttgcctaaaagttactatgtagacaaggctatcctcacacatagatttcacctgcctctgctgcctgagtgctcagatttaaattatgttccatcatgtccagTACT s rn5.chr9 29193679 175 - 121549591 TCTACTATAATA--TATGTTGTGATGCTTTGGGtttggtttgtttgggactggg-taccaactgtaagtctggcttgcctggaagttactatgtagacaaggttgtcctcatgg--agatttcatttgcttctgtctcctgagaactcag-ttcaaatcatgctccaccatgcccAACACT i rn5.chr9 C 0 I 195 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 11686 5425 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e equCab2.chr6 66879867 2705 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e gorGor3.chr2B 12197722 2954 - 131632457 I e panTro4.chr2B 12035398 2950 - 247518478 I e hg19.chr2 12097682 58 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=25793.000000 s mm10.chr1_GL456221_random 59567 384 + 206961 Gtgattagttttaattgtcaacctgacacaatctataatcatcttggattgtatgagtcttaataaaggattgtctagattagggtaatctctgggtatttctgtccagggttgtccgcattatgctagttgatatggaaagatccagtgcactgtgggtagcaccaatccctaggtaaaaggaaatggcttggtggcattaagtgtagggagcaagttgaacactgacaggcacgcttgtactcattgctctctgctcttgactgtggacatgaccaactgcttctagttcccacctagactttcctgcaatgatggcctgtaacctggacctg-------------ttctttctcccctaagttgctttgtgtcagtgtatgctatcacagcaac s rn5.chr9 29194049 382 - 121549591 gtgattagttttaattgtcaacatgacataatctataaccatcttgaattgtgtcagtcttaataaaggattgtctagattagagtggtctatgggtatgtctgtccagggttgtcctcattctgctggttgatatggaaagatccagtccactgtgggcagcatcaattactaggt---agggcat-cctgggtggca-cgagtgtagggagcaagttgatcactgacaggcacacttgcattcattactctctgctcttgactgtggacatgaccaactgctt----------catagactttcctgcaacgatgacctgtaacctggacctgtgggctaataggttttttcctcccctaaattgctttatatcagggtatgttatcgcagcaac i rn5.chr9 I 195 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 11686 5425 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e equCab2.chr6 66879867 2705 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e gorGor3.chr2B 12197722 2954 - 131632457 I e panTro4.chr2B 12035398 2950 - 247518478 I e hg19.chr2 12097682 58 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=0.000000 s mm10.chr1_GL456221_random 59951 163 + 206961 agaaatgagactGGgctgggcgtggtggcacacacctttaatcccagcactcaggaggtagaggcaggctgatttctgagtttgaggccagcctggtctacaaagtgagttccagaacagccagggctatacagagaaaccctgtctcgaaaaaaccaaaAAT e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 11686 5425 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e equCab2.chr6 66879867 2705 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e gorGor3.chr2B 12197722 2954 - 131632457 I e panTro4.chr2B 12035398 2950 - 247518478 I e hg19.chr2 12097682 58 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29194431 0 - 121549591 C a score=563.000000 s mm10.chr1_GL456221_random 60114 22 + 206961 aaaaaaaaaaagaaagaaagaa s hg19.chr2 12097740 22 - 243199373 aaatcaaggtggaaaagatgaa i hg19.chr2 I 58 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 11686 5425 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e equCab2.chr6 66879867 2705 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e gorGor3.chr2B 12197722 2954 - 131632457 I e panTro4.chr2B 12035398 2950 - 247518478 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29194431 0 - 121549591 C a score=1595.000000 s mm10.chr1_GL456221_random 60136 9 + 206961 agaaaTGAA s rn5.chr9 29194431 9 - 121549591 agaaatgaa i rn5.chr9 C 0 C 0 s hg19.chr2 12097762 9 - 243199373 aacagtgaa i hg19.chr2 C 0 I 10344 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 11686 5425 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e equCab2.chr6 66879867 2705 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e gorGor3.chr2B 12197722 2954 - 131632457 I e panTro4.chr2B 12035398 2950 - 247518478 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=88561.000000 s mm10.chr1_GL456221_random 60145 1412 + 206961 ACTGGAACACAATCTATAGACCTCAGGGTAAATGGAAATGACATTAAAATAAAAAAGCAGAACCTCTTCTTCCAGCTCATTTGTAAAGGCAATGCAGTTGACCCAGGACTGAGACATGTGTGGCTCATGTGTGGTTCATCCATGGTTCCACATGCTTTCTTCTCTCCTCCTGGTTCCCTATCTCTTGCAGTAATGGAGTCTC------------------GCACTTATTAACTACACTGCTG-CTGCAATGCCTGACATCTCAGGTGGCCAGTTCTCTCTGTCCAGAGACAGTGTTTAGGGAGAAGATCCTCTGAGAACAAAAGGCCCAAGAAGCCCAATGACACATAGGAGTGTTTG----TGTAATTGATCCCATTCTGGGTGGCAAATGGAAACCAATTATGATGTATGTTCATATGACAGAAGTGAGAAATCATCTGGGCATGGTCCAATGCCTGTCGTCACAGCATCCTACCTTCATGGCCGACATAGCGACTTCCTCTTTTTCACTTTACCTAGTGTTAGTATTGTTACAATATCTgcatatttagacatcagaggacaactttgaggagttggttctctgttttcactcttgtatgggttctgggcatcaaactcaggtcccagtgcctggtcaggacctttatccactgaggcaacctgttggcccttatctagtgacttcaaggtttgcctgggctatacagtgaaaccttgtctcaaataatgaagaaaTAAATCAATTTCTAAAACAAAAAAGGGGGGAAGGAgagctggtgagaagattccatggataaatgtcctccccttatagtttaatgccctgagttcaatcctgggacctacacagtagaagagaaccaactcctgcaagAGGGGAAGGGAATGAGCAAAAATAGGGTATG--------------TAAGTATGAAGATGCCATGCGGAGACCCATCATTTTCATGCTAACCTAAAT----AATTAACAAGAAAACTAAATCAAATAAATTGGGGCACATGTTTTCCTTTTGTTTATTTTAAATGTTTATAtatttttttaaattttcatacatgaatactgtgtttacatcttttctcctgctcccttttcttttcaatcccctcatgccttcctttctcactttctctcaaaaccatctctaattattgttttatatataaacacacacatatatacata-------------------------------------acacacatgcgcgtgtgc------------------gcacacacacacacatacatacaacctgca-----------------ctcctatgcatgtgtgtttagggctgaccactaagcactggataacctaacagagggttcattcctggagaatactggttgattttctctttgttaacagccattaatag-ctatggctcttcatctaggaatggagtctcgtgagatttctcccatccacatcagcacatcCCCTCCTGCTGCCACTGAAGATGTGTCTTTTTTTT s rn5.chr9 29194440 1480 - 121549591 actggaacaCCATCTATAGACCTCTGGGTAAGTGGAAATGCAA-------GAAAAAGCAGACCCTCTTCATCCATTTCATTTGTAAAGGCAAAGCAGTTGACCCAGGACTGAGAC-------------GTGTGGCTCATCCATAGTTGCACATGCTTTCTCCTCTCCGCCTGGTTCCCCACCTCTTTCAGTGACGGGGCCTCTCTACCACCTCAAAACCAGCACTTATTAGCCATGCTGTTCTCTACAGTGCCTGATA---------------TCTCTCTGCCCAGAGACAGTGTTTAGAGAGAGGATCCTCTGAGAAAAAAAGCCC--AGAAGTCCAATGAGACATGGGAGTGTTTGTTCATGTAATTGACGCCATTCTGGGTGGCAAACGGAAACAAATTATGACATATAGTTCAGTGACAGAAGCGAGAAATCATCTGGGCATGGTCCAATGCCTGTAGTCACAGCATCCTGCCTTCATGGCCAACATAGCAACT---TCTTTCTAATTTTACCTAGTGTTAGTACGGTTATAATATCTgcacatgtagaggtctgaggacaactttgtggatttggttctctcttttcactcttgggtaagttctgggcatcaaactcaggtcctggtgcctagacagaacctttatccactgaggcatcttgttggcccTtacctagtgacttcaaggctcacttgggctatacggcaaaaccttgtctc----aaTGAAGAAAGAAGTCAATTTCTAATACAAAGAAAGGGGGAAGGAAggctggtgggaaggttcagtgggcaaatgtccttccc-tatagtttaatggcctgagttcaatcttgggacccacagtgtaggagagaaccaagtcctgcaagAGGGGGAGGAGATGAGCAAAAATACAGTATGAAGTATGCAGTAAATACGTATGAAGATGCCATGTTGAGGCCCATCATTTTTATGCTAACCTAAATAATCAATTAACAAGAAAACTAAATCAAATAAATCAGGGCACATGTTTGCCTTTCATTTATTTTAAATGTTCATAta-tttttaaaattttcatgcatgaatgctgtatttacatcatttctcctgccccctttttgtctcaatcctctcatgccttcctttcccacttcctttcaaaaccatttttaattattgttacatatatatatacacatatacatataaatacatatatgtatacatacacacatatacacatgcatacatacatccgtgcgtacatacatacatacatacatacatacatacatacatacatacaacctgcagagttcatgtaatgttgctcgcatgcatatgtgtttagggctgcccgccagacactgcataacctaacagagggttcattcctggagaatactggtgcattttctctttcttaacagccatttattgcctacagctcttcatctaggggtggagccttgtgagatttctcccatccacaccagcacatcgcctggtgctgccACTGAAGACACATCCCTTTTTT i rn5.chr9 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 11686 5425 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e equCab2.chr6 66879867 2705 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e gorGor3.chr2B 12197722 2954 - 131632457 I e panTro4.chr2B 12035398 2950 - 247518478 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=6902.000000 s mm10.chr1_GL456221_random 61557 30 + 206961 AAGCACTTAAAATGCCAATACCT---ACATGCT s rn5.chr9 29195920 30 - 121549591 AAGCACTTAAAATGCCAATACCT---GCATGCT i rn5.chr9 C 0 C 0 s panTro4.chr2B 12038348 33 - 247518478 AACCAGTTAAAATACTGATGTCTCAAATGTATA i panTro4.chr2B I 2950 C 0 s gorGor3.chr2B 12200676 33 - 131632457 AACCAGTTACAATACTGATGTCTCGAATGTATA i gorGor3.chr2B I 2954 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 11686 5425 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e equCab2.chr6 66879867 2705 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=29364.000000 s mm10.chr1_GL456221_random 61587 79 + 206961 AAGCAGTTGAGAATGGTGCCtctcagggtatagcctgacgaccc-------ctgctcaagactctttcagatgccaaaaagaacaa- s rn5.chr9 29195950 85 - 121549591 GAATAACTGAGAATGATgactctcgaggtgtagtctgaggaacccc-aacaccgctcaagactctttcagatgccaacgcgaacac- i rn5.chr9 C 0 C 0 s panTro4.chr2B 12038381 85 - 247518478 AATTATCTTAGAAcagtaattctcaaagtggggtttagagaccccctaggattgtgcaagaccctttcaggtgtcaccaagta-aa- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12200709 85 - 131632457 AGTTATCTTAGAAcagtaattctcaaagtggggtttagagaccccctaggattgtgcaagaccctttcaggtgtcaccaagta-aa- i gorGor3.chr2B C 0 C 0 s equCab2.chr6 66882572 86 - 84719076 AATTACTTTAAAAcagtgattctcaaagcgtaggccaaggaccctt-gggattatgcaaaaccctttcaggtggcatcaaagtcaaa i equCab2.chr6 I 2705 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 11686 5425 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1365.000000 s mm10.chr1_GL456221_random 61666 1 + 206961 a s rn5.chr9 29196035 1 - 121549591 a i rn5.chr9 C 0 C 0 s panTro4.chr2B 12038466 1 - 247518478 a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12200794 1 - 131632457 a i gorGor3.chr2B C 0 C 0 s turTru2.JH490333 17111 1 + 53618 a i turTru2.JH490333 I 5425 I 827 s equCab2.chr6 66882658 1 - 84719076 a i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e rheMac3.chr12 12790591 11730 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=147334.000000 s mm10.chr1_GL456221_random 61667 387 + 206961 ctattctcagaacgatcctgaaataccatctgccccttttctctttcctctgcccaaaaatgttgggtgata-ttcacaggtgcc-tgtgggctgtggcatcgcagcagactgaactcagagataaacagggca-tctgt--gactttgacgaagcaggaaagtaaggacatttgtgagaa--ggtaaagcaagattgtatcttcccc---tttaattttattttagaaaatcttgttatttttcattaggatgca-cacttgt----gataatgatgaactctttggtactactttt-----aatggataaatattctaaatgcctgaagctgtaacttataattaatggtaaatctcattaaatttaacac-------caagagatagct-tttggggttctccataattctt s rn5.chr9 29196036 389 - 121549591 ccattctcagaaccatcctgaaataccacttgccctttctccctttcctcctcccaagagtgttgcgtggga-ttcgcagatgcc-catgggctgtggcatcactgcagactgaacgaagaggtaaacaggacagtctgg--gactttgaccaagcaggagagtaaggacatttgcgagaa--ggtaaagcaagattatatctttccc---tttaattttattttagaaaatattgttattttctgttaggttgcatcactcgt----gatggtgatgaatttgtggctgctattttt-----aagggatgaatattctaaatgtctgaagctttaatttataattaatggtaaatctcattaaattgaacac-------caaaagatagct-tttagggttctccataattttt i rn5.chr9 C 0 C 0 s panTro4.chr2B 12038467 396 - 247518478 ctcttcacataa------taacgtattattttccctttatctttctcattctctcatgaatatacaatgaaatttttcagaggctaaatggcctgtgatgtcacaatggattgaatgcagaagcagataggagggtctagctgccttctact------gatatttaaaagatgtataaaaa--tgtaaagcaatgctaatcctctggctaatttatttctattttgaaaagttttattatttttcataaaaacacatcacatat--tcacgggtaataaattcactactattatttctaaatgaataaatgcatattttaagtgttcaaagttttaatttctaat--atcataaatagcaacagatataaccca-ataaacaaaagccaactctttggggttctcgataattttt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12200795 396 - 131632457 ctcttcacataa------taacatattattttccctttatctttctcattctctcatgaatatacaatgaaatttttcagaggctaaatggcctgtgatgtcacaacggattgaatgcagaagcagataggagggtctagctgccttctact------gatatttaaaagacgtataaaaa--tgtaaagcaatgctaatcctctggctaatttatttctattttgaaaagttttattatttttcataaaaacacatcacatat--tcacgggtaataaattcactactattatttctaaatgaataaatacatattttaagtgttcaaagttttaatttctaat--atcgtaaatagcaacagatataaccca-ataaacaaaagccaattctttggggttctcgataattttt i gorGor3.chr2B C 0 C 0 s equCab2.chr6 66882659 405 - 84719076 cagttttcataatgatactaacatgttatttattctttttctctctcatcctctcacaagcatatagtgggattttccaaagaat-tatggcctgtggtatcacaacagatcgaatgcagaggcagataggagaatctggctgtcttctactgaaccagcta-taaaaaggtttgaaaaaaactgtgaaacattgctaatcctcttgctaattta-ttttattttgaaaaacatagttatttctcat-aaaatatgccattgatgttagtaggtaatgagttcattattattattttta----aatgactaagtattttaagttttcaaacttttaatttctaat--gtgataaatatcaatagatataacccacatgaacaaaagctagctctttggggttctcaataatattt i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 17112 827 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=7795.000000 s mm10.chr1_GL456221_random 62054 145 + 206961 ttaaaagAggtgtggttatgcacacctttaatcacagctcgtaggaggcagaggcaggaggcaggaggatctccatgaattcaaggccagcctggtctatatagcaagttccagactagtcaagactatacaACAAACAAACACA s rn5.chr9 29196425 131 - 121549591 aagaaaaaggggtG-----------TGTtaatcatagcatgtctgaggcagagac---aggcaggaggatctccatgaattctaggccagcctggtctatatagtgagttccaggctagtcaggagtacacaataaACAAACACA i rn5.chr9 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 17112 827 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e equCab2.chr6 66883064 0 - 84719076 C e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e gorGor3.chr2B 12201191 0 - 131632457 C e panTro4.chr2B 12038863 0 - 247518478 C e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=33414.000000 s mm10.chr1_GL456221_random 62199 120 + 206961 AAGAATATCAAAGTTATCTGTTACCAAAAAAATCTTGAGAGGGTCTTTTTTTTAAAGA----ACCTAAAATTTAT---ATGTAGTAACatataaaaatatacaataatttttattttaaaCTTAAGG s rn5.chr9 29196556 83 - 121549591 AAGCATATCCAAGTCATCTGATACC-AAAAAATCTTGTCA-------------------------------TAAT---ATG---------ACAAAACTATACAATAATTTTTATCTTAAACTTAAGG i rn5.chr9 C 0 C 0 s panTro4.chr2B 12038863 110 - 247518478 aaaaatataaaaatatcctgaaccc-aaata--cttgagaagcactgTTCTAAAAAGAGAGGATATATACTGCAT---ATA---------ATAAAATTAT--AGTAATTTCAATCTTAAACTTTAGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12201191 110 - 131632457 aaaaatataaaaatatcctgaaccc-aaata--cttgagaagcactgTTCTAAGAAGAGAGGATATATAGTGCAT---ATA---------ATAAAATTAT--AGTAATTTCAATCTTAAACTTTAGA i gorGor3.chr2B C 0 C 0 s equCab2.chr6 66883064 114 - 84719076 gagaatatagagggatcctgaaacc-aaaaaa-tttaagaagcactgTTCTAGAAAGAAAGGATATATACTTCATGTAATG---------Gtaaaattat--aataattttaatctaaaacttcaga i equCab2.chr6 C 0 I 39 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 17112 827 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=8768.000000 s mm10.chr1_GL456221_random 62319 107 + 206961 AGGCTGGCTATGTATATGTGCTTGCTCGTGTGTATGTGCCTGGCATATGCCTGGGCAAGGAGTCcagttgctctccacctta-tgttttgagatggggtctctcactg s rn5.chr9 29196639 106 - 121549591 AGGTTGTCtatgtatgtgtg--tgctcatgtctatgtacctggagtatgtctgtgcaaggagtccagttgttctccaccttatttttttgagacaaggtctctcactg i rn5.chr9 C 0 C 0 s panTro4.chr2B 12038973 55 - 247518478 -----TTCTATTTTAAAgt---tttttttgtt-----------------------------------ttgttt----------tgttttgagacggaatctcgctctg i panTro4.chr2B C 0 I 67 s gorGor3.chr2B 12201301 55 - 131632457 -----TTCTATTTTAAAgt---tttttttgtt-----------------------------------ttgttt----------tgttttgagacggaatctcgctctg i gorGor3.chr2B C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 17112 827 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e equCab2.chr6 66883178 39 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-333.000000 s mm10.chr1_GL456221_random 62426 141 + 206961 aacccggatatcattagttcagccagattagctggccagtcatctccggggatccaactgtctatattaccctaattctggagttaaaaa-cacacaccactacaccctggtttcatgt--------ggaatctgaaatgaac---tccccat- s rn5.chr9 29196745 136 - 121549591 aactccaatatcattaattca-------------gccagtcatctccagggacccaactgtctccacc-ccctaattctgaagttaaaaagcacacaccaccacatccaggtttcatgtgggttctagggatctgaactgagc---tccccat- i rn5.chr9 C 0 C 0 s gorGor3.chr2B 12201356 67 - 131632457 ------------------------------------------tcacccagg--------------------------ctggagtgcagtggtgcg-------atatcCTGGTAAAGTTT------------TTTAAATTGAGTGAGGACAAGTA i gorGor3.chr2B C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6301726 2681 + 10418462 I e turTru2.JH490333 17112 827 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e equCab2.chr6 66883178 39 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e panTro4.chr2B 12039028 67 - 247518478 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=78132.000000 s mm10.chr1_GL456221_random 62567 163 + 206961 AAAATCTGAGTTGGAACTA--AATTATTTCACAGACGGTAAATTCAAATACTGCAGTTTCACATGTGATGCACTGATCCAACTAGAAA---ATGC---AGCAAATTAGTCAG-AAATACAAAAGT-GCCAA-GGTGTCAAAACTAAACTA-CAAATGCCACGAAGTAATAAGCAG s rn5.chr9 29196881 164 - 121549591 AACACCTGAGTTGGAACTA--AATTACTTCACAGATGGTAAATCCAAATACTGCAGCTTCATATTTGACATTCTGACCCAGCTAGAAG---ATGC---GGCCAATTAATCAG-AAATACAAAAGT-ACCAA-GGTGTCAAAACTAAACTACCCAGTGCCACAAGACAGTGAGCAG i rn5.chr9 C 0 I 996 s speTri2.JH393335 6304407 168 + 10418462 AAAATTTGAGTGAGTACTAGTAAAAAATTGAGTGA-AATGAATTTAAATGATATTGTTTCACATTTGATACTATAGACCAACTAGAGA--TATAG---AGAGAATTAACTAGAAAACTCAAGAGTAACCAATAGAGTCAAAATGAGACTA-CAAAGCTTACAAAATAATGAAAAA i speTri2.JH393335 I 2681 C 0 s panTro4.chr2B 12039095 162 - 247518478 AAAAATTGAGTT--AAGTA--ACTTATTTCAAATA---AAAATTCAAATGATATAGTTATAAATTTGATGCTCT----CAGTTAGAGAAATATACATTAAAGAATTAATTAG-AAACCCAAATGTAACAAATAGAGTCAAAATGAGGCTA-CAAACTTTACAAAATAATGAGAAA i panTro4.chr2B I 67 C 0 s gorGor3.chr2B 12201423 162 - 131632457 AAAAATTGAGTT--AAATA--ACTTATTTCAAATA---AAAATTCAAATGATATAGTTATAAATTTGATGCTCT----CGGTTAGAGAAATATACATTAAAGAATTAATTAG-AAACCCAAGTGTAACAAATAGAGTCAAAATGAGGCTA-CAAACTTTACAAAATAATGAGAAA i gorGor3.chr2B C 0 C 0 s equCab2.chr6 66883217 161 - 84719076 AAAAACTGAGTT--AAATG--ATTTATTTCAAAAACACTAAACTCAAATGACATGGTTGCACATTTGATGCTAT----CAATTAGAGaaatatatattaaataattaattaGAAAATCTAAGTGTAAC----AGAGTCAAAATGAGACTG-TAAGGCTCATAAAAGGATAACAG- i equCab2.chr6 I 39 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 17112 827 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1748.000000 s mm10.chr1_GL456221_random 62730 22 + 206961 CAAACATGCTCACACACTGTTT s rn5.chr9 29198041 22 - 121549591 cacacacacacacacacaGTTT i rn5.chr9 I 996 C 0 s speTri2.JH393335 6304575 15 + 10418462 -------CTGCACCTGTTGTTT i speTri2.JH393335 C 0 I 12 s panTro4.chr2B 12039257 16 - 247518478 ------GAAAAACGTGCTCTTT i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 12201585 16 - 131632457 ------GAAAAACGTGCTATTT i gorGor3.chr2B C 0 I 7 s equCab2.chr6 66883378 19 - 84719076 ---TAAATAAAACATACTGTTT i equCab2.chr6 C 0 I 5 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 17112 827 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3225.000000 s mm10.chr1_GL456221_random 62752 2 + 206961 AG s rn5.chr9 29198063 2 - 121549591 AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6304602 2 + 10418462 AA i speTri2.JH393335 I 12 C 0 s panTro4.chr2B 12039280 2 - 247518478 AG i panTro4.chr2B I 7 C 0 s gorGor3.chr2B 12201608 2 - 131632457 AG i gorGor3.chr2B I 7 C 0 s turTru2.JH490333 17939 2 + 53618 AG i turTru2.JH490333 I 827 I 5969 s equCab2.chr6 66883402 2 - 84719076 AG i equCab2.chr6 I 5 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 12790591 11730 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=61213.000000 s mm10.chr1_GL456221_random 62754 135 + 206961 AAAAAA-ACAGAGACAAGATATGAAAGTTTCTCCAAAAATCATTCTCAAGAGAAT-------CCCCAGAATAGA-------TCCCCAGTACTGTAAAAAAGA--AAAACAAAATGAGACAACAAAAAAAATA------GGTAAAGGAATTCAAGAATG s rn5.chr9 29198065 142 - 121549591 AAAAAACAGAGACATAAGATATGAAAGTTTCCCCAAAATCCATTCTCAAGAGGAT-------CCCCAGAATCAA-------TCCCCAGTACTGCAAAAAAGA--AAAACGAAATGAAACAAAAATAATAATAACAATTGATAAAGGAGTTCCTGAGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6304604 151 + 10418462 AACAAA-AGAGACATAAGTTATAAGAAAGACCAAAAAA---ATTCATAGGAAAATATA--TCATTTAAAACAGATTAA-TTTCCATCTTAAAGTATAAATGATCAAAATAGAATCTAACTACAAGAAATACAACAAAGATTAGGGAACATTAAAAATG i speTri2.JH393335 C 0 I 8098 s panTro4.chr2B 12039282 147 - 247518478 AAAATAAAGAGGCataaaatataaaaat----aaaaaatCCATAAGCAACAAGAT-------ATTTAAAACAGATTAAGCTACCGTCTTAAATTATAAATGGTCAAAATAGAATCTAACTACAAGAGACATAACAGAGATAAAATAACATTAAAAATG i panTro4.chr2B C 0 I 6429 s gorGor3.chr2B 12201610 147 - 131632457 AAAATAAAGAGGCataaaatataaaaat----aaaaaatCCATAAGCAACAAGAT-------ATTTAAAACAGATTAAGCTACCATCTTAAATTATAAATGCTCAAAATAGAATCTAACTACAAGAGACATAACAGAGATAAAATAACATTAAAAATG i gorGor3.chr2B C 0 I 6429 s equCab2.chr6 66883404 158 - 84719076 AAAATGAAGAGGCATAATATATAAGAAGTGCTAAAAAATTCACAAGCAAGAAGATATATGTCATTTAAAACAGATTAAATTACCATGTTAAAGTATAAATGGTCAAAATAGAATCTAACTACAAAAGACACAATGAAAATAAAGTGAAATTAAAAATG i equCab2.chr6 C 0 I 10949 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 17941 5969 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=77991.000000 s mm10.chr1_GL456221_random 62889 1442 + 206961 AAAGAAagagagagagagaaagagagagagagggagggagggagggaaggagggagggagggagaaaggaaggaaggaaggaaggaaggaaggaagaatcataaaa-tgttttactaaaaccaaaagggcataaaaagaaaggaaagccaaaaaaaaaaaaagagtaaaatgaaaatatttacaaacatggtaggtattTCTCTGTGTCCATAATGAGTCAAAATGTGGATA--------------------------------ATTTAATAATAGCACAATTATAAAACAGAGTACGTTTAAAAACTGTAACTAATGTAAATAAAAGAgggtctgggagg--atggctcagctgatacaggtcttgccaccaagtctgtggacatgagcttgctcccctaagaacttactacatggtagtaggagagagccaactccccaaagttgtcctctgatctcaaaagacacattgtggcacctgcacacatacaATAAATAAATGAATGTAATTTTTTTAAAA----TGGGGTAAGACAAGCAAAAGTGTGACCCTTTCTCCTACACTAAAAAAGCACTGAAGTCTAAAAATTA--TTAAATCTGAGACACAGCAAAGGCAGTGGCTAATGGGAAACATACAGCTTTGTATGTGTCGGAAGCTAAGAGAGGCATAAATAAACAATCTTATGAGGAATGATTTCATCCCAATGAAGACAAAGATTCAATGAAATTAAAGTAGAAATCCATAGAATTAAAAGAAGTGGGCATTATGCTCACA-----------TCCTTTGGAAAGATCAATACATTATTAAATCTCTACTCAGGCGAGCGAAGGTAAGACAGACACGCGC----TATGAATTCCACAGACAGTGCAAGGGTAGCAAAGATTAATGCAGCCATCCATATGCCTGTCAGATTGATAACCACAACAAAAATGTCTTCAGAGACAGAAACTGCAAACACTCA--------GAGACAGAT-ACCTCCACCTGCTTATATGAAAGGCACTGAGCCAGTGATTAACCACCCTATTTACTCCCAAAAGACACAGCACACTGCTGGTTATCACTAGTGGACTTGACCAAATGTCACAGGAGAAATGGTGCTT----AGGATATCTGCAGGAGCAGAAGTAGCCCTGACTGAGTCCCTGTTGGGGG--------CATCACACACCTTCGTCTCATCTTTtctatttttattttgaattatgtatgcatgagtctgtctcagtgtgcttcctgcatgcaaatacagtgtccatggaaggcagagaaggctgtctgacctggagttggcatgagaggcagttggaagccctaggataggtgctggggacccaacccatgcccactactaggaaaatatgagtgcttaaacctgggccatctctccTATCGTTtgtgtgtgtgtgt-----gtgtgtgtgtgtgtgtgagagagagagagagagagagacagagagagacagagacagagagagacagagacagagacacagacagagagac s rn5.chr9 29198207 1404 - 121549591 A--------------------------------------------------------------------------------------------AAGAATCATAAAAATGTTTTACTAAAACCAAAGGAGCACAAAAAGAAAGGAAAGTCAAAAGAAAAA---GAGTGAAATGAAAATATTTACAAACATGATAGGTGTTTCTCTGTGTCCATTATCAGTGGAAATGTGATTTTCCATTTATTTGGaaatttaattatatattatatttaataataGCACGATAATAAAACAG--TATGTTTGAAAACTGCAACTAGTATAAGTAGAAGAGGCGCTGGggggggatggctcagctgatacaggccctgccaccgagtctgcggacacgagcttgctccc-taagacctc----cgtggttgaaggagagaatcagccagctaaggttgttccctgacctcaacagacacactgtggcacttgtacacgtacaataaataaatt----taatttttaaaaaaCCTATGGGGGAAGACAGGCAAAAGTGCGACTCTTGCTCCTACACTGAAAAAGCACAGAAGTCTAAAACATAAATTAAATCTGAGACACAGCAAAGGCAGTGGCTAGGGGAAAACACATAGCTTTGTATATGTCAGAAGGTAAGAGAGGCATAAATG--CAGTCTTATGAGGAGCAATTTCATCCCAATGAAAACAAAGATTCAGTGGaattaaagtagaaatctataagattaaaagaagtgagtgttctgctcacaccacaaactactcctttggaaagatcaatgcgttattaaatctctagtcagactgacgaaggaaagacagacacacacacactatgaatcccacagacagtgaagggatagtaaagactgatgcagccattcctacacctgtcggattgataaccacaacaaaaatgtcttcaaagacagaaacagcacacactcacactctgagagacagatcacttcaacaggcttataagaaagacattgagccagtaatgaaccaccccactcactcccaaaagacacagcatgctgttggt-atcactagtggccttgaccaaacgtCAC-GGAGAAGTGATGCTTTCTTAAGATGTCTGCAGGACCAGAAGTTGCCCCAAGAGAGTCCCTGTTGGAGGGCAATTAGCTACATACACCTTCGTCTCATCTTTtttgtttttattttgaattatgtatatatgtgtctgtctcggtgtgtttcctgcatgtaaatacagcgcctatggaaggcagaagagggtgtctgatcggagttgggcatcagaggcagttagaagcc-tgggatgggtgctggggac---------gtctactactaaagcagtatgagtgcttaaacctgggccatctctccTCTCATGCGCATGCGGGGGAagagagagagagagagagagagagagagagagagagagagagagagagagagagacagacagacagacacagacacagacagagagacagagagac i rn5.chr9 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e speTri2.JH393335 6304755 8098 + 10418462 I e turTru2.JH490333 17941 5969 + 53618 I e rheMac3.chr12 12790591 11730 - 106825570 I e equCab2.chr6 66883562 10949 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2826440 4533 - 6458163 I e gorGor3.chr2B 12201757 6429 - 131632457 I e panTro4.chr2B 12039429 6429 - 247518478 I e hg19.chr2 12097771 10344 - 243199373 I e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3641.000000 s mm10.chr1_GL456221_random 64331 2 + 206961 ag s rn5.chr9 29199611 2 - 121549591 ag i rn5.chr9 C 0 C 0 s speTri2.JH393335 6312853 2 + 10418462 AA i speTri2.JH393335 I 8098 C 0 s hg19.chr2 12108115 2 - 243199373 AA i hg19.chr2 I 10344 C 0 s panTro4.chr2B 12045858 2 - 247518478 AA i panTro4.chr2B I 6429 C 0 s gorGor3.chr2B 12208186 2 - 131632457 AA i gorGor3.chr2B I 6429 C 0 s nomLeu2.GL397366 2830973 2 - 6458163 AA i nomLeu2.GL397366 I 4533 C 0 s rheMac3.chr12 12802321 2 - 106825570 AA i rheMac3.chr12 I 11730 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 17941 5969 + 53618 I e equCab2.chr6 66883562 10949 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=9813.000000 s mm10.chr1_GL456221_random 64333 4 + 206961 agag s rn5.chr9 29199613 4 - 121549591 agag i rn5.chr9 C 0 C 0 s speTri2.JH393335 6312855 4 + 10418462 AGAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108117 4 - 243199373 AGAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12045860 4 - 247518478 AGAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208188 4 - 131632457 AGAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2830975 4 - 6458163 AGAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802323 4 - 106825570 AGAT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66894511 4 - 84719076 AGAC i equCab2.chr6 I 10949 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 17941 5969 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-155.000000 s mm10.chr1_GL456221_random 64337 1 + 206961 a s rn5.chr9 29199617 1 - 121549591 a i rn5.chr9 C 0 I 16 s speTri2.JH393335 6312859 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108121 1 - 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12045864 1 - 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208192 1 - 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2830979 1 - 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802327 1 - 106825570 G i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 23910 1 + 53618 A i turTru2.JH490333 I 5969 C 0 s equCab2.chr6 66894515 1 - 84719076 A i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 11698351 11835 - 158406734 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=105273.000000 s mm10.chr1_GL456221_random 64338 39 + 206961 ATTTGTATCCATTTCTAACCAGCTCAGTAAC-------CAACAGGA s rn5.chr9 29199634 39 - 121549591 ATTTGCATCTATTTCTAACCAGCTATGTAAC-------CATCAGGA i rn5.chr9 I 16 C 0 s speTri2.JH393335 6312860 46 + 10418462 ATTTTTATCCTTCTCCAGCCAGACGTGTAACAGAGTCTCGTTAAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108122 42 - 243199373 ATTTCCAGGCTTCTCTGACCAGATATGTAAAAAA----TACCAGAA i hg19.chr2 C 0 I 7 s panTro4.chr2B 12045865 42 - 247518478 ATTTCCAGACTTCTCTGACCAGATATGTAAAACA----TACCAGAA i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 12208193 42 - 131632457 ATTTCCAGGCTTCTCTGACCAGATATGTAAAACA----TACCAGAA i gorGor3.chr2B C 0 I 7 s nomLeu2.GL397366 2830980 41 - 6458163 ATTTCCAGGCTTCTCTGACCAGATATGTAAAACA----TACCAGA- i nomLeu2.GL397366 C 0 I 6 s rheMac3.chr12 12802328 42 - 106825570 ATTTCCAGGCTTCTCTGACCAGACATGTAAAACA----TACCAGAA i rheMac3.chr12 C 0 I 5 s calJac3.chr6 11710186 42 - 158406734 ATTTCCAGGCTTCTCTGACCAGATATGTAAAACA----TACCAGAA i calJac3.chr6 I 11835 I 5 s turTru2.JH490333 23911 41 + 53618 ATTTCCCTCCTTCTCTAACCAGATGTGTAATACA----TCCCAGA- i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66894516 41 - 84719076 TTTTTCATCATTCTCTAACCAGACATGTAACACA----TCCCAGA- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=15382.000000 s mm10.chr1_GL456221_random 64377 6 + 206961 AGAGAA s rn5.chr9 29199673 6 - 121549591 ATAGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6312906 6 + 10418462 ACAACA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108171 6 - 243199373 ATAAAA i hg19.chr2 I 7 C 0 s panTro4.chr2B 12045914 6 - 247518478 ATAAAA i panTro4.chr2B I 7 C 0 s gorGor3.chr2B 12208242 6 - 131632457 ATAAAA i gorGor3.chr2B I 7 C 0 s nomLeu2.GL397366 2831027 6 - 6458163 ATAGAA i nomLeu2.GL397366 I 6 C 0 s rheMac3.chr12 12802375 3 - 106825570 ---GAA i rheMac3.chr12 I 5 I 5 s papHam1.scaffold15394 26339 3 + 58077 ---GAA i papHam1.scaffold15394 N 0 I 245 s calJac3.chr6 11710233 6 - 158406734 AAATAA i calJac3.chr6 I 5 I 2 s turTru2.JH490333 23952 6 + 53618 ATAGAA i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66894557 6 - 84719076 AGAGAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=22390.000000 s mm10.chr1_GL456221_random 64383 22 + 206961 AGGGTTAAGAGCATCACCCACT------- s rn5.chr9 29199679 22 - 121549591 GGGGTTAAGAGCAACACCCACT------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6312912 14 + 10418462 ------ACAAGCAACACT--CT------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108177 21 - 243199373 -AAAGCAGAAGCAGCACTCACT------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12045920 21 - 247518478 -AAAGCAGAAGCAGCACTCACT------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208248 21 - 131632457 -AAAGCAGAAGCAGCACTCACT------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831033 21 - 6458163 -AAAGCAGAAGCAGCACTCACT------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802383 21 - 106825570 -AAGGCAAAAGCAGTACTCACT------- i rheMac3.chr12 I 5 C 0 s calJac3.chr6 11710241 21 - 158406734 -ATAGCAGAAGCAGCACTCCCT------- i calJac3.chr6 I 2 C 0 s turTru2.JH490333 23958 17 + 53618 -------AAAAGCACCTTCTCCCT----- i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66894563 22 - 84719076 -------GAAGCAACGCTCATCACCCAGC i equCab2.chr6 C 0 I 3 e pteVam1.scaffold_9232 37669 9783 + 60856 T e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26342 245 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=28067.000000 s mm10.chr1_GL456221_random 64405 13 + 206961 CCCCACCTGCTCA s rn5.chr9 29199701 13 - 121549591 CCCCACCTCCTCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6312926 13 + 10418462 CCCCACCTACTCC i speTri2.JH393335 C 0 I 22 s hg19.chr2 12108198 13 - 243199373 CTCTACCTGCTTG i hg19.chr2 C 0 I 22 s panTro4.chr2B 12045941 13 - 247518478 CTCTACCTGCTTG i panTro4.chr2B C 0 I 22 s gorGor3.chr2B 12208269 13 - 131632457 CTCTACCTGCTTG i gorGor3.chr2B C 0 I 22 s nomLeu2.GL397366 2831054 13 - 6458163 CTCTACCTGCTTG i nomLeu2.GL397366 C 0 I 19 s rheMac3.chr12 12802404 12 - 106825570 CTCCACCTGC-TG i rheMac3.chr12 C 0 I 22 s calJac3.chr6 11710262 13 - 158406734 CTCTACCTGCTGG i calJac3.chr6 C 0 I 22 s turTru2.JH490333 23975 13 + 53618 CCCTGCCTGTTTG i turTru2.JH490333 C 0 I 25 s equCab2.chr6 66894588 12 - 84719076 TTACGT-TGTTCA i equCab2.chr6 I 3 I 15 s pteVam1.scaffold_12135 11559 11 - 44403 CCCCATCTGTT-- i pteVam1.scaffold_12135 n 9783 C 0 e myoLuc2.GL429770 26043231 719 + 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26342 245 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1135.000000 s mm10.chr1_GL456221_random 64418 1 + 206961 A s speTri2.JH393335 6312961 1 + 10418462 A i speTri2.JH393335 I 22 C 0 s hg19.chr2 12108233 1 - 243199373 G i hg19.chr2 I 22 C 0 s panTro4.chr2B 12045976 1 - 247518478 G i panTro4.chr2B I 22 C 0 s gorGor3.chr2B 12208304 1 - 131632457 G i gorGor3.chr2B I 22 C 0 s nomLeu2.GL397366 2831086 1 - 6458163 G i nomLeu2.GL397366 I 19 C 0 s calJac3.chr6 11710297 1 - 158406734 G i calJac3.chr6 I 22 C 0 s turTru2.JH490333 24013 1 + 53618 A i turTru2.JH490333 I 25 C 0 s equCab2.chr6 66894615 1 - 84719076 A i equCab2.chr6 I 15 C 0 s myoLuc2.GL429770 4906389 1 - 30916457 A i myoLuc2.GL429770 n 719 I 108 e pteVam1.scaffold_12135 11570 0 - 44403 C e oviAri1.chr2 244287620 50769 + 263237078 I e rheMac3.chr12 12802416 22 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26342 245 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29199714 0 - 121549591 C a score=224538.000000 s mm10.chr1_GL456221_random 64419 104 + 206961 CTTTCACTTCCTCCCTCTGAGCTAGGAAA----CTATGGGGACCTGA--CCTAAGTAGGACTT--GTGG--GCTCAGGCCAGAGCT-GTCTTCAACCACA--AG--ACTGTGGAGACC--A s rn5.chr9 29199714 103 - 121549591 CTCTCACTTCCTCCAACTGAGAGATGAAA----CT-CCCGGACCTGA--CCTAAGTAGGACAT--GTGG--GCTCAGGCCAGGGCT-GTCCACAACCACT--AA--CCTGGGAAGACT--G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6312962 107 + 10418462 CTTCTGATTCCCCCAATCAAGGGTTTAAAGATCCTGCACGGACTCCA---------AGGGCTC--ATGGCCACCCAGAGCAGAACT-GTCCCCCAACTTTGCAG--GCTAGAAAAAGCTGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108234 114 - 243199373 CTTTCACTTCCTCCTACCAAGTATTCAGAGATCCTGAAGTGATTCTAGGGCTAAGAGCCACATAGATGG--GCTCAGAGCAGAACCGGTCCCCAACTACA-CAG--CCTGGAAAGTGT--G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12045977 114 - 247518478 CTTTCACTTCCTCCTACCAAGTATTCAGAGATCCTGAAGTGATTCTAGGGCTAAGAGCCACATAGATGG--GCTCAGAGCAGAACCGGTCCCCAACTACA-CAG--CCTGGAAAGTGT--G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208305 114 - 131632457 CTTTCACTTCCCCCTACCAAGTATTCAGAGGTCCTGAAGTGATTCTAGGGCTAAGAGCCACATAGATGG--GCTCAGAGCAGAACCGGTCCCCAACTACA-CAG--CCTGGAAAGTGT--G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831087 114 - 6458163 CTTTCACTTCCTCCTACCAAGTATTCAGAGATCCTGAACTGACTCTAGGGTTAAGAGCCACATAGATGG--GCTCAGAGCAGAACCGGTCCCCAACTACA-CAG--CCTGGAAAGTGT--G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802438 114 - 106825570 CTTTCACTTCCTCCTACCAAGTATTCAGAGATCCTGAACTGACTCTAGGGCTAAAAGCCACATAGATGG--GCTCAGAGCAGAGCTGGTCCCCAACTACA-CAG--CCTGGCAGGTGT--G i rheMac3.chr12 I 22 C 0 s calJac3.chr6 11710298 114 - 158406734 CTTTTACTTCCTCCTACCAAGTATGCGGAGATCCTGAACTGATTCTAGAGCTAAGAGCCACATAAAGGG--GCTCAGAGCAGAACTGGTCCCCAGCTACA-CAG--CCTGGAATGTGT--G i calJac3.chr6 C 0 C 0 s turTru2.JH490333 24014 114 + 53618 CTTTCAGTTCCTCCTATTGGGTGTTCAGAGGTCCTGAGTTGACTCTCAGACTCAGGGCCACACAGATGG--GCTCTGACAAAACTGGTCCCCCCACTACC-CAGAAACTAGAAAAAG---- i turTru2.JH490333 C 0 I 8 s equCab2.chr6 66894616 105 - 84719076 CTTTCACTTCCACCTATCAAGTGCTCACGGAC---------ACTCGCTGGCTCAGGGCCACATAGATGG--TCTCTGAGCAGAACTGGCCCCCAACTACC-CAGAATCTTGAAAAAG---- i equCab2.chr6 C 0 I 4 s pteVam1.scaffold_12135 11570 112 - 44403 --TTCACTTCTTCCTGTCAAGTCTTCAGAGGCACTGAACTAACTCTCCAGCCCAGACCCAAAGAGATGG--GTTCTGCGAGAATCAGTTTCCAAACTAAC-CATTAACTGGAAAACA---- i pteVam1.scaffold_12135 C 0 I 6 e myoLuc2.GL429770 4906390 108 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26342 245 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2739.000000 s mm10.chr1_GL456221_random 64523 1 + 206961 G s rn5.chr9 29199817 1 - 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313069 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108348 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046091 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208419 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831201 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802552 1 - 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710412 1 - 158406734 A i calJac3.chr6 C 0 C 0 s turTru2.JH490333 24136 1 + 53618 A i turTru2.JH490333 I 8 C 0 s equCab2.chr6 66894725 1 - 84719076 A i equCab2.chr6 I 4 C 0 s myoLuc2.GL429770 4906498 1 - 30916457 G i myoLuc2.GL429770 I 108 I 101 e pteVam1.scaffold_12135 11682 6 - 44403 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26342 245 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=214647.000000 s mm10.chr1_GL456221_random 64524 68 + 206961 CAA--TTGACAGG------ATCAGGTTTGAACTTACTCT-TAAT-GATCATTCTT------GGACAGAGCTGTCCTTTAGAGTG s rn5.chr9 29199818 68 - 121549591 CAA--CCGACAGG------ATCAGGTTTGAACTTATTCT-AAAT-GATCTTCCTT------GGACAGAGCTGTCCTTTAGAGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313070 79 + 10418462 CAA--CAAATAGGCATTTAATTTGGATTCTAATTTTTCT-AAAA-AGACTTTTTTTGTAGGGGACAGAGTTGTCTGTT-GGGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108349 70 - 243199373 CAA--CAGACAGGC-----GTTTGGATTTTAATTCTTCT-AAAAAGATCCTTTTT------AGACAGAGTTGTCTTTTGGAGTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046092 70 - 247518478 CAA--CAGACAGGC-----ATTTGGATTTTAATTCTTCT-AAAAAGATCTTTTTT------AGATAGAGTTGTCTTTTGGAGTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208420 70 - 131632457 CAA--TAGACAGGC-----ATTTGGATTTTAATTCTTCT-AAAAGGATCTTTTTT------AGACAGAGTTGTCTTTTGGAGTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831202 70 - 6458163 CAA--CAGACAGGC-----ATTTCGACTTTAATTCTTCT-AAAAAGATCTTTTTT------AGACAGAGTTGTCTTTTGGAGTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802553 70 - 106825570 CAA--CAGACAGGC-----ATTTGGATTTTAATTCTTCT-AAAAAGATCTTTTTT------AGACAGAGTTGTCTTTTGGAGTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710413 70 - 158406734 CAA--CAGACAGGT-----ATTTGGATTTTAATTCTTCT-AAAAAGATCTTTTTT------AGACAGAGTTGTCTTTTGGCGTA i calJac3.chr6 C 0 C 0 s turTru2.JH490333 24137 71 + 53618 -----CAGTTGGGAGTTCGATTTGGATGTAAATTTTTCT-GAAAAGACTCTTACC-------TACAGACCTGTCTTTGGAGGTA i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66894726 76 - 84719076 CAA--TAGTCAGACATTCAACTTGAATGTTAATCTTTCTAAAAAAGACCTTTTCT------GGACGGAGCTGTCTTTTGGGGTG i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 11688 76 - 44403 CAAGGTAGTCAGGTGTTTGATTTGGATATTAATTTTTCT-AAAAAGACCTTTTCT------GGACAGAGTTTTC-TTTGGGGTG i pteVam1.scaffold_12135 I 6 C 0 e myoLuc2.GL429770 4906499 101 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26342 245 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4748.000000 s mm10.chr1_GL456221_random 64592 7 + 206961 AGCATTA------------ s rn5.chr9 29199886 7 - 121549591 AGGGTTA------------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313149 7 + 10418462 GGGATAA------------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108419 7 - 243199373 GGGATAA------------ i hg19.chr2 C 0 I 11 s panTro4.chr2B 12046162 7 - 247518478 GGGATAA------------ i panTro4.chr2B C 0 I 11 s gorGor3.chr2B 12208490 7 - 131632457 GGGATAA------------ i gorGor3.chr2B C 0 I 11 s nomLeu2.GL397366 2831272 7 - 6458163 GGGATAA------------ i nomLeu2.GL397366 C 0 I 11 s rheMac3.chr12 12802623 7 - 106825570 GGGATAA------------ i rheMac3.chr12 C 0 I 11 s papHam1.scaffold15394 26587 7 + 58077 GGGATGA------------ i papHam1.scaffold15394 I 245 I 185 s calJac3.chr6 11710483 7 - 158406734 GGGATGA------------ i calJac3.chr6 C 0 I 11 s turTru2.JH490333 24208 19 + 53618 GGGATCAAGGAGGTTATGG i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66894802 18 - 84719076 GGGATAGAGGAGGCT-TGG i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 11764 18 - 44403 GGGATAGAGGAAGTG-TGG i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906499 101 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=187028.000000 s mm10.chr1_GL456221_random 64599 77 + 206961 GAAAG--------AGAAGAGAGGTCAGAAGTCACAATGAACCAGCCACTTTTACA----------GGAGCTCACAGGAAGT--CCACAC-------------AGCA-CCAG s rn5.chr9 29199893 90 - 121549591 GAAAG--------AGATGAGAGGCCAGAAGTCACAGTGAACCAGCCACTCCTACA----------AGAGCTCCCAGGAAGT--CCACACCGGAAGGCCACAGCGCG-CCAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313156 76 + 10418462 GGAAAGCTGAGGCAGATGAAAGTGCAGAGGTCACAAGGAACC---------TTTA----------GGAGGGACCTTGAAGT--TCTAGC-------------AGCC-CCAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108437 86 - 243199373 GGGAG--------AAGAGAGGGTTCAGAGGTCACGGGGAATCATCCAATCCTACA-CAAAGCCTCAGAACAGGCATGATGT--TCAAAC-------------AGCT-CCAG i hg19.chr2 I 11 C 0 s panTro4.chr2B 12046180 86 - 247518478 GGGAG--------AAGAGAGGGTTCAGAGGTCACGGGGAATCATCCAATCCAACA-CAAAGCCTCAGAAGGGGCATGATGT--TCAAAC-------------AGCT-CCAG i panTro4.chr2B I 11 C 0 s gorGor3.chr2B 12208508 86 - 131632457 GGGAG--------AAGAGAGGGTTCAGAGGTCACGGGGAATCATCCAATCCTACA-CAAAGCCTCAGAAGGGGCATGATGT--TCAAAC-------------AGCT-CCAG i gorGor3.chr2B I 11 C 0 s nomLeu2.GL397366 2831290 87 - 6458163 GGGAG--------AAGAGAGGGTTCAGAGGTCACGGGGAATCATCCAATCCTACAGCAAAGCCTCAGAAGGGGCATGATGT--TCAAAC-------------AGCT-CCAG i nomLeu2.GL397366 I 11 C 0 s rheMac3.chr12 12802641 87 - 106825570 GGAAG--------ATGAGAGGGTTCAGAGGTCACGGGGAATTATCCAATCCTACAGCAAAGCCTCAGAAGGGGCATGATGT--TCAAAT-------------GGCT-CCAG i rheMac3.chr12 I 11 C 0 s calJac3.chr6 11710501 87 - 158406734 GGGAG--------AGGAAAGGGTTCAGAGATCATGGGTAATCATCCTATCCTTCAGCAAAGCCTCAGAAGGCGCATGATGT--TCAAAC-------------AGCT-CCAG i calJac3.chr6 I 11 C 0 s turTru2.JH490333 24227 86 + 53618 GGGAA--------ATGAGAGGGCTCAGAGGCCACAAGGAATCATCCAGCCTTGTAGCA-AGCCCCAGAGGGACCAGGGAAT--TCCAGC-------------AGTGCCCA- i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66894820 85 - 84719076 GGAAG---------TGAGAGGTTTCAGAGGGTGTGAGGAATCATCCAACCTTGCAGCACAGCCTCACATGGACCAGGAAGT--GCCAAC-------------AGTG-CCG- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 11782 86 - 44403 GGGAG--------ATGAGAGCGTTCAGAGAGCTTGAGGAATCATTCGAGCCTGCGACGAGGCCTCAGAGGGGCCGGGGTTTTCACCATC-------------A--G-CAG- i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906499 101 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26594 185 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-6710.000000 s mm10.chr1_GL456221_random 64676 2 + 206961 AC- s rn5.chr9 29199983 2 - 121549591 AC- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313232 2 + 10418462 CC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108523 2 - 243199373 TC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046266 2 - 247518478 TC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208594 2 - 131632457 TC- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831377 2 - 6458163 TC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802728 2 - 106825570 TC- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710588 2 - 158406734 TC- i calJac3.chr6 C 0 C 0 s tupBel1.scaffold_131862.1-52911 40656 2 - 52911 CC- i tupBel1.scaffold_131862.1-52911 N 0 I 5 s turTru2.JH490333 24313 2 + 53618 -CC i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66894905 2 - 84719076 -CT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 11868 2 - 44403 -CC i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906499 101 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26594 185 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=12662.000000 s mm10.chr1_GL456221_random 64678 3 + 206961 AAG s rn5.chr9 29199985 3 - 121549591 AAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313234 3 + 10418462 CAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108525 3 - 243199373 CAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046268 3 - 247518478 CAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208596 3 - 131632457 CAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831379 3 - 6458163 CCG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802730 3 - 106825570 CAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710590 3 - 158406734 CAG i calJac3.chr6 C 0 C 0 s turTru2.JH490333 24315 3 + 53618 CAG i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66894907 3 - 84719076 CAG i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 11870 3 - 44403 CAG i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906499 101 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26594 185 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40658 5 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-17225.000000 s mm10.chr1_GL456221_random 64681 3 + 206961 CTC- s rn5.chr9 29199988 3 - 121549591 CTC- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313237 3 + 10418462 CCA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108528 2 - 243199373 CC-- i hg19.chr2 C 0 I 1 s panTro4.chr2B 12046271 2 - 247518478 CC-- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12208599 2 - 131632457 CC-- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2831382 2 - 6458163 CC-- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12802733 2 - 106825570 CC-- i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11710593 2 - 158406734 CC-- i calJac3.chr6 C 0 I 1 s tupBel1.scaffold_131862.1-52911 40663 1 - 52911 -T-- i tupBel1.scaffold_131862.1-52911 I 5 I 74 s turTru2.JH490333 24318 3 + 53618 CT-G i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66894910 3 - 84719076 CT-G i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 11873 3 - 44403 CT-G i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906499 101 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26594 185 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4121.000000 s mm10.chr1_GL456221_random 64684 9 + 206961 TGGAACAGA s rn5.chr9 29199991 9 - 121549591 TGGGACAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313240 1 + 10418462 T-------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108531 8 - 243199373 -TTTGCAGA i hg19.chr2 I 1 C 0 s panTro4.chr2B 12046274 8 - 247518478 -TTTGCAGA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12208602 8 - 131632457 -TTTGCAGA i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2831385 8 - 6458163 -TTTGCAGA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12802736 8 - 106825570 -TTTGCAGA i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11710596 8 - 158406734 -TTCACAGA i calJac3.chr6 I 1 C 0 s turTru2.JH490333 24321 9 + 53618 CATGGCAGT i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66894913 9 - 84719076 CATAGCATT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 11876 9 - 44403 CATGGCAGT i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906499 101 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26594 185 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40664 74 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=67864.000000 s mm10.chr1_GL456221_random 64693 45 + 206961 AGCAAGGAAAT---GAAGTGGAGTGTGGAGTTAGGGCG--ACCATATAAC s rn5.chr9 29200000 44 - 121549591 AGCAAGGAAAT---GAAGTGGGGT---GAGTTGGGGGGTAACCATAGGAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313241 23 + 10418462 ----------------------GT---GACTTTGAGTG--GCTTTTAGTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108539 45 - 243199373 TGTAAGAGAATAGGAAGATGATGT---GAGTCACGGCA--TCCTTGAGTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046282 45 - 247518478 TGTAAGAGAATAGGAAGATGATGT---GAGTCACGGCA--TCCTTGAGTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208610 45 - 131632457 TGTAAGAGAATAGGAAGATGATGT---GAGTCACGGCA--TCCTTGAGTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831393 45 - 6458163 TGTAAGAGAATAGGAAGATGATGT---GAGTCACGGCA--TCCTTGAGTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802744 45 - 106825570 TGTAAGAGAATAGGAAGATGATGT---GAGTCACGGCA--TCCCTGAGTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710604 45 - 158406734 TGTAAGGAAATAGGAAGACCATGT---GAGTCAGAGCG--CCCTTAAGTT i calJac3.chr6 C 0 C 0 s turTru2.JH490333 24330 42 + 53618 TACGAGAAAAG---AAGGTGATGT---GAGTCAGGGTG--TCCTTAAGTT i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66894922 42 - 84719076 TACACAAAAAG---GAGGCGAAGC---GAGTCAGGGTG--ACCTCAAGTT i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4906600 37 - 30916457 TGTGAGAAAAG---GAAAT-ATGT---GAGTTA-TGTG--GCCTTAA--- i myoLuc2.GL429770 I 101 C 0 s pteVam1.scaffold_12135 11885 27 - 44403 TGCAAAGAAAA---GAA------------------GTG--GCCTTCAATT i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26594 185 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40664 74 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=5314.000000 s mm10.chr1_GL456221_random 64738 8 + 206961 TCTCTGAC s rn5.chr9 29200044 8 - 121549591 TCTCTGAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313264 8 + 10418462 CCCCCAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108584 8 - 243199373 TCTCCAAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046327 8 - 247518478 TCTCCAAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208655 8 - 131632457 TCTCCAAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831438 8 - 6458163 TCTCCAAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802789 8 - 106825570 TATCCAAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710649 8 - 158406734 TCTCCAAT i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104248 5 - 111236 TCCCC--- i vicPac1.scaffold_4435 N 0 I 3 s turTru2.JH490333 24372 5 + 53618 TCCAC--- i turTru2.JH490333 C 0 I 10 s equCab2.chr6 66894964 4 - 84719076 -CCAC--- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 11912 4 - 44403 -TCCC--- i pteVam1.scaffold_12135 C 0 I 4 e myoLuc2.GL429770 4906637 0 - 30916457 C e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26594 185 + 58077 I e felCat5.chrC1 212427424 9478 + 221441202 T e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40664 74 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=32089.000000 s mm10.chr1_GL456221_random 64746 13 + 206961 AGCTAGCCTA-CTG s rn5.chr9 29200052 14 - 121549591 AGCTAGCCTACCCG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313272 13 + 10418462 AGCCAACCCA-CTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108592 12 - 243199373 AGCCAATCC--CTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046335 12 - 247518478 AGCCAATCC--CTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208663 12 - 131632457 AGCCAATCC--CTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831446 12 - 6458163 AACCAATCC--CTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802797 12 - 106825570 AGCCAATCC--CTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710657 12 - 158406734 AGCCAATCC--CTG i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104256 13 - 111236 GGCTAATTCA-CTA i vicPac1.scaffold_4435 I 3 C 0 s turTru2.JH490333 24387 13 + 53618 GGCTAATCCA-CTG i turTru2.JH490333 I 10 C 0 s felCat5.chrC1 9051405 13 - 221441202 AGCCAATCCT-CTG i felCat5.chrC1 n 9478 C 0 s equCab2.chr6 66894968 2 - 84719076 ------------AG i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4906637 12 - 30916457 -GCTTTCCCA-CTT i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_12135 11920 13 - 44403 GGCTTATCCA-CTG i pteVam1.scaffold_12135 I 4 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26594 185 + 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40664 74 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=11524.000000 s mm10.chr1_GL456221_random 64759 2 + 206961 CA s rn5.chr9 29200066 2 - 121549591 CG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313285 2 + 10418462 CC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108604 2 - 243199373 CA i hg19.chr2 C 0 I 4 s panTro4.chr2B 12046347 2 - 247518478 CA i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 12208675 2 - 131632457 CA i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 2831458 2 - 6458163 CA i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 12802809 2 - 106825570 CA i rheMac3.chr12 C 0 I 4 s calJac3.chr6 11710669 2 - 158406734 CA i calJac3.chr6 C 0 I 4 s tupBel1.scaffold_131862.1-52911 40738 2 - 52911 TA i tupBel1.scaffold_131862.1-52911 I 74 I 5 s vicPac1.scaffold_4435 104269 2 - 111236 CA i vicPac1.scaffold_4435 C 0 C 0 s turTru2.JH490333 24400 2 + 53618 CA i turTru2.JH490333 C 0 C 0 s felCat5.chrC1 9051418 2 - 221441202 CG i felCat5.chrC1 C 0 C 0 s equCab2.chr6 66894970 2 - 84719076 CA i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4906649 2 - 30916457 TA i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_12135 11933 2 - 44403 TA i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26594 185 + 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-32597.000000 s mm10.chr1_GL456221_random 64761 2 + 206961 GA----- s rn5.chr9 29200068 2 - 121549591 AT----- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313287 2 + 10418462 AT----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108610 2 - 243199373 AA----- i hg19.chr2 I 4 C 0 s panTro4.chr2B 12046353 2 - 247518478 AA----- i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 12208681 2 - 131632457 AA----- i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 2831464 2 - 6458163 AA----- i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 12802815 2 - 106825570 AA----- i rheMac3.chr12 I 4 C 0 s papHam1.scaffold15394 26779 2 + 58077 AA----- i papHam1.scaffold15394 I 185 C 0 s calJac3.chr6 11710675 2 - 158406734 AA----- i calJac3.chr6 I 4 C 0 s tupBel1.scaffold_131862.1-52911 40745 1 - 52911 A------ i tupBel1.scaffold_131862.1-52911 I 5 I 164 s vicPac1.scaffold_4435 104271 6 - 111236 -GTTTTT i vicPac1.scaffold_4435 C 0 I 1 s turTru2.JH490333 24402 6 + 53618 -ATTTTT i turTru2.JH490333 C 0 C 0 s felCat5.chrC1 9051420 6 - 221441202 -ATTTAA i felCat5.chrC1 C 0 C 0 s equCab2.chr6 66894972 6 - 84719076 -ATTTTA i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4906651 6 - 30916457 -ATTTTA i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_12135 11935 6 - 44403 -AGTTTA i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=72344.000000 s mm10.chr1_GL456221_random 64763 14 + 206961 GAA-GGCTGCCTTGC s rn5.chr9 29200070 14 - 121549591 GAA-GCCTGCTTTTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313289 15 + 10418462 CAACATCTGCTTTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108612 14 - 243199373 AAA-ATCTGATTGCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046355 14 - 247518478 AAA-ATCTGATTGCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208683 14 - 131632457 AAA-ATCTGATTGCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831466 14 - 6458163 AAA-ATCTGATTGCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802817 14 - 106825570 AAA-ATCTGATTGCC i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 26781 14 + 58077 AAA-ATCTGATTGCC i papHam1.scaffold15394 C 0 C 0 s calJac3.chr6 11710677 14 - 158406734 AAA-ATCTGATTGCC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104278 14 - 111236 GAA-ATTTGATTTCC i vicPac1.scaffold_4435 I 1 C 0 s turTru2.JH490333 24408 14 + 53618 GAA-ATCTTACTTCC i turTru2.JH490333 C 0 C 0 s felCat5.chrC1 9051426 14 - 221441202 GAA-ATCTGATTTCC i felCat5.chrC1 C 0 I 19 s equCab2.chr6 66894978 13 - 84719076 AAA-CTCTGATTTC- i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4906657 14 - 30916457 AAA-ACCGAATGTGC i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_12135 11941 14 - 44403 AAA-ACCTGATTTGC i pteVam1.scaffold_12135 C 0 C 0 e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=9346.000000 s mm10.chr1_GL456221_random 64777 16 + 206961 -CCAGTTCTTCTTTTCC s rn5.chr9 29200084 16 - 121549591 -CCAGTTCTTCGTGTCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313304 13 + 10418462 -TAGGTTTTATCT---C i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108626 11 - 243199373 -TC-GTTATTTAT---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046369 11 - 247518478 -TC-GTTATTTAT---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208697 11 - 131632457 -TC-GTTATTTAT---- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831480 11 - 6458163 -TC-GTTATTTAT---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802831 11 - 106825570 -TC-GTTATTTAT---- i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 26795 11 + 58077 -TC-GTTATTTAT---- i papHam1.scaffold15394 C 0 C 0 s calJac3.chr6 11710691 11 - 158406734 -TT-GTTATTTAT---- i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104292 11 - 111236 -CC-ATAATTTAT---- i vicPac1.scaffold_4435 C 0 I 4 s turTru2.JH490333 24422 11 + 53618 -TC-ACTGTTTAT---- i turTru2.JH490333 C 0 I 4 s equCab2.chr6 66894991 12 - 84719076 TTC-ATTGTCTAT---- i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4906671 4 - 30916457 -TC-AT----------- i myoLuc2.GL429770 C 0 I 171 s pteVam1.scaffold_12135 11955 11 - 44403 -TC-ACTATGTAT---- i pteVam1.scaffold_12135 C 0 I 5 e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 9051440 19 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=28020.000000 s mm10.chr1_GL456221_random 64793 4 + 206961 TTAT s rn5.chr9 29200100 4 - 121549591 TTAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313317 4 + 10418462 TTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108637 4 - 243199373 TTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046380 4 - 247518478 TTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208708 4 - 131632457 TTGT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831491 4 - 6458163 TTGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802842 4 - 106825570 TTGT i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 26806 4 + 58077 TTGT i papHam1.scaffold15394 C 0 C 0 s calJac3.chr6 11710702 4 - 158406734 TTGT i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104307 4 - 111236 TTGT i vicPac1.scaffold_4435 I 4 C 0 s turTru2.JH490333 24437 4 + 53618 TTGT i turTru2.JH490333 I 4 C 0 s equCab2.chr6 66895003 4 - 84719076 TTAT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 11971 3 - 44403 -TGT i pteVam1.scaffold_12135 I 5 C 0 e myoLuc2.GL429770 4906675 171 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 9051440 19 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-13556.000000 s mm10.chr1_GL456221_random 64797 4 + 206961 GAGA s rn5.chr9 29200104 4 - 121549591 GAGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313321 4 + 10418462 GGTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108641 4 - 243199373 AACT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046384 4 - 247518478 AACC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208712 4 - 131632457 AACC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831495 4 - 6458163 AACC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802846 4 - 106825570 AACC i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 26810 4 + 58077 AACC i papHam1.scaffold15394 C 0 C 0 s calJac3.chr6 11710706 4 - 158406734 AACC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104311 2 - 111236 AA-- i vicPac1.scaffold_4435 C 0 I 2 s turTru2.JH490333 24441 2 + 53618 CA-- i turTru2.JH490333 C 0 I 1 s felCat5.chrC1 9051459 2 - 221441202 AA-- i felCat5.chrC1 I 19 I 130 s equCab2.chr6 66895007 1 - 84719076 -G-- i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_12135 11974 2 - 44403 AA-- i pteVam1.scaffold_12135 C 0 I 2 e myoLuc2.GL429770 4906675 171 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=53382.000000 s mm10.chr1_GL456221_random 64801 36 + 206961 TCACTGTCTCAAATATCTGTGGGCCT-T-GGACCCAGC s rn5.chr9 29200108 34 - 121549591 TCA--GTCTCAAATATCAGTGGGCCT-T-GGTCCCAGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313325 29 + 10418462 TTG--TTCTC------TTGTCGACCTGT-GGAATGGGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108645 29 - 243199373 GAA--TTCTA------TTGTATACCTGT-AGAGTGAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046388 29 - 247518478 TAA--TTCTA------TTGTATACCTGT-AGAGTGAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208716 29 - 131632457 TAA--TTCTA------TTGTATACCTGT-AGAGTGAAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831499 29 - 6458163 TAA--TTCTA------TTGTATACCTGT-AGAGTGAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802850 29 - 106825570 TAA--TTCTA------TTGTATACGTGT-AGAGTGAAG i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 26814 29 + 58077 TAA--TTCTA------TTGTATACGTGT-AGAGTGAAG i papHam1.scaffold15394 C 0 I 178 s calJac3.chr6 11710710 29 - 158406734 TCA--TTTTA------TTGTACAGCTGT-AGAGTGAAG i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104315 29 - 111236 TCA--TGCTG------TTGCGTACCAGT-AGAATGAAG i vicPac1.scaffold_4435 I 2 C 0 s turTru2.JH490333 24444 28 + 53618 CCA--TTCTG------TT-TATATCTAT-AGAATGAGG i turTru2.JH490333 I 1 C 0 s equCab2.chr6 66895009 26 - 84719076 GTA--ATCTC------TTCTATC----TGAGAAGCAGG i equCab2.chr6 I 1 C 0 s pteVam1.scaffold_12135 11978 30 - 44403 TTA--TTCTA------TTGTATACCCGTGGTGGTGAGG i pteVam1.scaffold_12135 I 2 C 0 e myoLuc2.GL429770 4906675 171 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 9051461 130 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=14129.000000 s mm10.chr1_GL456221_random 64837 12 + 206961 CTGGGCGGC-----CCT s rn5.chr9 29200142 12 - 121549591 CTGGGTGGC-----CCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313354 12 + 10418462 TGGGGAGAC-----ATA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108674 14 - 243199373 CTGGGTAGACA---TTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046417 14 - 247518478 CTGGGTAGACA---TTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208745 14 - 131632457 CTGGGTAGACA---TTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831528 14 - 6458163 CTGGGTAGACA---TTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802879 14 - 106825570 CTGGGTAGACA---TTA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710739 17 - 158406734 CTGGGTAGACATTTTTA i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104344 12 - 111236 CTGGGTAGACA---G-- i vicPac1.scaffold_4435 C 0 I 1 s turTru2.JH490333 24472 12 + 53618 CTGGGAAGACA---G-- i turTru2.JH490333 C 0 I 71 s equCab2.chr6 66895035 12 - 84719076 CTGGGTAGACA---G-- i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_12135 12008 12 - 44403 CTCAGTAGACA---G-- i pteVam1.scaffold_12135 C 0 I 1 e myoLuc2.GL429770 4906675 171 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26843 178 + 58077 I e felCat5.chrC1 9051461 130 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=51120.000000 s mm10.chr1_GL456221_random 64849 22 + 206961 AGTAACACATTTAAAGGCAGAT s rn5.chr9 29200154 22 - 121549591 AGTAACACATTTCAACACAGAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313366 21 + 10418462 CGTAACAAATGCAGAGGT-GAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108688 22 - 243199373 AATAACAAGTATGAAAGGGAAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046431 22 - 247518478 AATAACAAGTATGAATGGGAAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208759 22 - 131632457 AATAACAAGTATGAATGGGAAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831542 22 - 6458163 AATAACAAGTATGAATGGGAAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802893 22 - 106825570 AATAACAAGTATGAATGGGAAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710756 22 - 158406734 AGTAACAAGTGTGAATGGGAAC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104357 22 - 111236 AACAATGACTGTAGATGCCAGC i vicPac1.scaffold_4435 I 1 C 0 s equCab2.chr6 66895048 22 - 84719076 AATAACAAATGTACACACCGAC i equCab2.chr6 I 1 C 0 s pteVam1.scaffold_12135 12021 22 - 44403 AAGAACAAAAGTAGATGCCGAC i pteVam1.scaffold_12135 I 1 C 0 e myoLuc2.GL429770 4906675 171 - 30916457 I e oviAri1.chr2 244287620 50769 + 263237078 I e turTru2.JH490333 24484 71 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26843 178 + 58077 I e felCat5.chrC1 9051461 130 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=157344.000000 s mm10.chr1_GL456221_random 64871 51 + 206961 CTTAGCAGAGACAAGGGACA----AGAGAGA---ATGGGACTAACCTGCTGCT-GAG-TT s rn5.chr9 29200176 53 - 121549591 CTTAGCAGAGACAAGAGACA----AGAGAAA-GGATGGGACTTACCTGCTGCT-GAG-TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313387 55 + 10418462 CTTATCACATACCAGGGCAA----GGAGAGGAGGCTGGGACTTACCTGAAACT-GAGACT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108710 58 - 243199373 CCTACCAGAGATGAAGGACAGACGGGAAAGGAGACGATGACCCACCTGAAGTT-GAG-AT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046453 58 - 247518478 CCTACCAGAGATGAAGGACAGACGGGAAAGGAGACGATGACCCACCTGAAGTT-GAG-AT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208781 58 - 131632457 CCTACCAGAGATGAAGGACAGACGGGAAAGGAGACGATGACCCACCTGAAGTT-GAG-AT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831564 58 - 6458163 CCTACCAGAGATGAAGGACAGACGGGAAAGGAGACGATGACCCACCTGAAGTT-GAG-AT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802915 58 - 106825570 CCTACCAGAAATGAAGGACAGACGGGAAAGGAGACGATGACCCACCTGGAGTT-GAG-AT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710778 58 - 158406734 CCTAGCAGAGCTGAAGGACAGACAGGAAAGGAGATGATGACCCACCTGAAGTT-GAG-AT i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104379 55 - 111236 CCTAGGGGACATACAGGACC---CGGACAAGATGCTTGGACTAACCTGCAGTT-GAG-GT i vicPac1.scaffold_4435 C 0 C 0 s oviAri1.chr2 18934442 51 - 263237078 CTTACGAGAGATGCAGGAC-------ACAGGAGGCCAGGACTAACCTGCGGTTAGAG-G- i oviAri1.chr2 n 50769 C 0 s equCab2.chr6 66895070 55 - 84719076 CTTACGAAAAACGAAAGACA---TGAAGAGGAGGCCAGGACTAACCTGCAGTT-GAA-GT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12043 54 - 44403 CTTACCAGACATGAAGGACA---AG-AGAAGAGGCCACAACTGACCTGCGGTT-GAG-AT i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906675 171 - 30916457 I e turTru2.JH490333 24484 71 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26843 178 + 58077 I e felCat5.chrC1 9051461 130 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=5821.000000 s mm10.chr1_GL456221_random 64922 4 + 206961 CATT s rn5.chr9 29200229 4 - 121549591 CATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313442 4 + 10418462 CTGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108768 4 - 243199373 TGCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046511 4 - 247518478 TGCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208839 4 - 131632457 TGCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831622 4 - 6458163 TGCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802973 4 - 106825570 TGCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710836 4 - 158406734 CGCT i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104434 4 - 111236 AGCT i vicPac1.scaffold_4435 C 0 C 0 s turTru2.JH490333 24555 1 + 53618 ---T i turTru2.JH490333 I 71 I 35 s oviAri1.chr2 18934493 1 - 263237078 ---T i oviAri1.chr2 C 0 I 3 s equCab2.chr6 66895125 4 - 84719076 CGCT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12097 4 - 44403 GGCT i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906675 171 - 30916457 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26843 178 + 58077 I e felCat5.chrC1 9051461 130 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4955.000000 s mm10.chr1_GL456221_random 64926 6 + 206961 GTTGCC s rn5.chr9 29200233 6 - 121549591 GTCTCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313446 6 + 10418462 GTCCAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108772 6 - 243199373 GTCTCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046515 6 - 247518478 GTCTCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208843 6 - 131632457 GTCTCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831626 6 - 6458163 GTCTCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802977 6 - 106825570 GTCTCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710840 6 - 158406734 GCCTCC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104438 3 - 111236 GCC--- i vicPac1.scaffold_4435 C 0 I 3 s oviAri1.chr2 18934497 3 - 263237078 GCC--- i oviAri1.chr2 I 3 I 3 s equCab2.chr6 66895129 3 - 84719076 GCC--- i equCab2.chr6 C 0 I 3 s pteVam1.scaffold_12135 12101 3 - 44403 GCC--- i pteVam1.scaffold_12135 C 0 I 3 e myoLuc2.GL429770 4906675 171 - 30916457 I e turTru2.JH490333 24556 35 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26843 178 + 58077 I e felCat5.chrC1 9051461 130 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=12099.000000 s mm10.chr1_GL456221_random 64932 3 + 206961 TCC s rn5.chr9 29200239 3 - 121549591 TCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313452 3 + 10418462 GTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108778 3 - 243199373 ACT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046521 3 - 247518478 ACT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208849 3 - 131632457 ACT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831632 3 - 6458163 ACT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12802983 3 - 106825570 ACT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11710846 3 - 158406734 ACT i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104444 3 - 111236 ACT i vicPac1.scaffold_4435 I 3 C 0 s oviAri1.chr2 18934503 3 - 263237078 ACT i oviAri1.chr2 I 3 C 0 s felCat5.chrC1 9051591 3 - 221441202 ACC i felCat5.chrC1 I 130 I 53 s equCab2.chr6 66895135 3 - 84719076 ACT i equCab2.chr6 I 3 C 0 s pteVam1.scaffold_12135 12107 3 - 44403 ACC i pteVam1.scaffold_12135 I 3 C 0 e myoLuc2.GL429770 4906675 171 - 30916457 I e turTru2.JH490333 24556 35 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26843 178 + 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=46081.000000 s mm10.chr1_GL456221_random 64935 12 + 206961 TGCCATCCCCTA s rn5.chr9 29200242 12 - 121549591 TGCCATCCCCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313455 12 + 10418462 TGCCGTCCCTAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108781 12 - 243199373 TGCCATCTGCCC i hg19.chr2 C 0 I 1 s panTro4.chr2B 12046524 12 - 247518478 TGCCATCTGCCC i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12208852 12 - 131632457 TGCCATCTGCCC i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2831635 12 - 6458163 TGCCATCTGCCC i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12802986 12 - 106825570 TGCCATCTGCCC i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11710849 12 - 158406734 TGCCATCTGCCC i calJac3.chr6 C 0 I 1 s vicPac1.scaffold_4435 104447 9 - 111236 TGTCA---TCTC i vicPac1.scaffold_4435 C 0 C 0 s oviAri1.chr2 18934506 12 - 263237078 TGCCATCTTCTT i oviAri1.chr2 C 0 C 0 s equCab2.chr6 66895138 12 - 84719076 TGCCATCTTCTA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12110 12 - 44403 TGCCATCTTCTG i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906675 171 - 30916457 I e turTru2.JH490333 24556 35 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26843 178 + 58077 I e felCat5.chrC1 9051594 53 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40746 164 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4969.000000 s mm10.chr1_GL456221_random 64947 10 + 206961 -CACAGACT--CC s rn5.chr9 29200254 10 - 121549591 -CGCAGACC--CC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313467 10 + 10418462 -TGCTGGCC--CC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108794 10 - 243199373 -TGCTGGCC--CT i hg19.chr2 I 1 C 0 s panTro4.chr2B 12046537 10 - 247518478 -TGCTGGCC--CT i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12208865 10 - 131632457 -TGCTGGCC--CT i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2831648 10 - 6458163 -TGCTGGCC--CT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12802999 10 - 106825570 -TGCTGGCC--CC i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11710862 10 - 158406734 -TGCTGGCC--CT i calJac3.chr6 I 1 C 0 s tupBel1.scaffold_131862.1-52911 40910 10 - 52911 -TGTTTGCT--CT i tupBel1.scaffold_131862.1-52911 I 164 C 0 s vicPac1.scaffold_4435 104456 8 - 111236 CT-CAGGCC---- i vicPac1.scaffold_4435 C 0 C 0 s oviAri1.chr2 18934518 8 - 263237078 CT-TAGACC---- i oviAri1.chr2 C 0 C 0 s equCab2.chr6 66895150 10 - 84719076 TTCCTGGCCC--- i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_12135 12122 11 - 44403 CTGCTGGCCCA-- i pteVam1.scaffold_12135 C 0 I 3 e myoLuc2.GL429770 4906675 171 - 30916457 I e turTru2.JH490333 24556 35 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26843 178 + 58077 I e felCat5.chrC1 9051594 53 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-17128.000000 s mm10.chr1_GL456221_random 64957 8 + 206961 AAGGGAC-------------------C s rn5.chr9 29200264 26 - 121549591 AAGGGACCCTGAACTTGGCTCAG-GGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313477 25 + 10418462 --TGGGCCGTGCGCTTGGCTTAGCCGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108804 9 - 243199373 GCTGGGCCA------------------ i hg19.chr2 C 0 I 14 s panTro4.chr2B 12046547 9 - 247518478 GCTGGGCCA------------------ i panTro4.chr2B C 0 I 14 s gorGor3.chr2B 12208875 9 - 131632457 GCTGGGCCA------------------ i gorGor3.chr2B C 0 I 14 s nomLeu2.GL397366 2831658 9 - 6458163 GCTGGGCCA------------------ i nomLeu2.GL397366 C 0 I 14 s rheMac3.chr12 12803009 9 - 106825570 GCTGGGCCA------------------ i rheMac3.chr12 C 0 I 39 s calJac3.chr6 11710872 9 - 158406734 GCTGGGCCA------------------ i calJac3.chr6 C 0 I 20 s tupBel1.scaffold_131862.1-52911 40920 9 - 52911 GCTGGACCA------------------ i tupBel1.scaffold_131862.1-52911 C 0 I 14 s vicPac1.scaffold_4435 104464 8 - 111236 ATGGAACT------------------- i vicPac1.scaffold_4435 C 0 C 0 s turTru2.JH490333 24591 8 + 53618 ACGGAGCT------------------- i turTru2.JH490333 I 35 C 0 s oviAri1.chr2 18934526 8 - 263237078 ATGGAGCC------------------- i oviAri1.chr2 C 0 C 0 s equCab2.chr6 66895161 8 - 84719076 GCTGGGCC------------------- i equCab2.chr6 I 1 I 25 s pteVam1.scaffold_12135 12136 8 - 44403 GCTGGCCT------------------- i pteVam1.scaffold_12135 I 3 I 12 e myoLuc2.GL429770 4906675 171 - 30916457 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 26843 178 + 58077 I e felCat5.chrC1 9051594 53 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=398.000000 s mm10.chr1_GL456221_random 64965 1 + 206961 A s rn5.chr9 29200290 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313502 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s vicPac1.scaffold_4435 104472 1 - 111236 G i vicPac1.scaffold_4435 C 0 C 0 s turTru2.JH490333 24599 1 + 53618 G i turTru2.JH490333 C 0 C 0 s oviAri1.chr2 18934534 1 - 263237078 A i oviAri1.chr2 C 0 C 0 e pteVam1.scaffold_12135 12144 12 - 44403 I e myoLuc2.GL429770 4906675 171 - 30916457 I e rheMac3.chr12 12803018 39 - 106825570 I e equCab2.chr6 66895169 25 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2831667 14 - 6458163 I e gorGor3.chr2B 12208884 14 - 131632457 I e panTro4.chr2B 12046556 14 - 247518478 I e hg19.chr2 12108813 14 - 243199373 I e calJac3.chr6 11710881 20 - 158406734 I e papHam1.scaffold15394 26843 178 + 58077 I e felCat5.chrC1 9051594 53 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e tupBel1.scaffold_131862.1-52911 40929 14 - 52911 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=10035.000000 s mm10.chr1_GL456221_random 64966 1 + 206961 G s rn5.chr9 29200291 1 - 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313503 1 + 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108827 1 - 243199373 G i hg19.chr2 I 14 C 0 s panTro4.chr2B 12046570 1 - 247518478 G i panTro4.chr2B I 14 C 0 s gorGor3.chr2B 12208898 1 - 131632457 G i gorGor3.chr2B I 14 C 0 s nomLeu2.GL397366 2831681 1 - 6458163 G i nomLeu2.GL397366 I 14 C 0 s rheMac3.chr12 12803057 1 - 106825570 G i rheMac3.chr12 I 39 C 0 s papHam1.scaffold15394 27021 1 + 58077 G i papHam1.scaffold15394 I 178 C 0 s calJac3.chr6 11710901 1 - 158406734 A i calJac3.chr6 I 20 C 0 s tupBel1.scaffold_131862.1-52911 40943 1 - 52911 G i tupBel1.scaffold_131862.1-52911 I 14 C 0 s vicPac1.scaffold_4435 104473 1 - 111236 G i vicPac1.scaffold_4435 C 0 C 0 s turTru2.JH490333 24600 1 + 53618 G i turTru2.JH490333 C 0 I 135 s oviAri1.chr2 18934535 1 - 263237078 G i oviAri1.chr2 C 0 C 0 s equCab2.chr6 66895194 1 - 84719076 G i equCab2.chr6 I 25 C 0 s pteVam1.scaffold_12135 12156 1 - 44403 G i pteVam1.scaffold_12135 I 12 C 0 e myoLuc2.GL429770 4906675 171 - 30916457 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 9051594 53 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-511.000000 s mm10.chr1_GL456221_random 64967 1 + 206961 A s rn5.chr9 29200292 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313504 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108828 1 - 243199373 A i hg19.chr2 C 0 I 1 s panTro4.chr2B 12046571 1 - 247518478 A i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12208899 1 - 131632457 A i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2831682 1 - 6458163 A i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12803058 1 - 106825570 C i rheMac3.chr12 C 0 I 26 s papHam1.scaffold15394 27022 1 + 58077 C i papHam1.scaffold15394 C 0 I 26 s tupBel1.scaffold_131862.1-52911 40944 1 - 52911 A i tupBel1.scaffold_131862.1-52911 C 0 I 5 s equCab2.chr6 66895195 1 - 84719076 G i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12157 1 - 44403 A i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906675 171 - 30916457 I e oviAri1.chr2 18934536 0 - 263237078 C e turTru2.JH490333 24601 135 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 11710902 0 - 158406734 C e vicPac1.scaffold_4435 104474 0 - 111236 C e felCat5.chrC1 9051594 53 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-7878.000000 s mm10.chr1_GL456221_random 64968 3 + 206961 -CCG s rn5.chr9 29200293 3 - 121549591 -CTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313505 3 + 10418462 -CGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108830 2 - 243199373 -CA- i hg19.chr2 I 1 C 0 s panTro4.chr2B 12046573 2 - 247518478 -CA- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12208901 2 - 131632457 -CA- i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2831684 2 - 6458163 -CA- i nomLeu2.GL397366 I 1 C 0 s tupBel1.scaffold_131862.1-52911 40950 2 - 52911 -CA- i tupBel1.scaffold_131862.1-52911 I 5 N 0 s vicPac1.scaffold_4435 104474 3 - 111236 CCA- i vicPac1.scaffold_4435 C 0 C 0 s oviAri1.chr2 18934536 3 - 263237078 CCC- i oviAri1.chr2 C 0 C 0 s equCab2.chr6 66895196 3 - 84719076 TCA- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12158 3 - 44403 TTA- i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906675 171 - 30916457 I e turTru2.JH490333 24601 135 + 53618 I e rheMac3.chr12 12803059 26 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 11710902 0 - 158406734 C e papHam1.scaffold15394 27023 26 + 58077 I e felCat5.chrC1 9051594 53 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-4930.000000 s mm10.chr1_GL456221_random 64971 2 + 206961 A----------A s rn5.chr9 29200296 2 - 121549591 A----------A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313508 12 + 10418462 GTTAGGTTTCCA i speTri2.JH393335 C 0 C 0 s vicPac1.scaffold_4435 104477 2 - 111236 ----------AA i vicPac1.scaffold_4435 C 0 I 23 s oviAri1.chr2 18934539 2 - 263237078 ----------CA i oviAri1.chr2 C 0 I 23 s equCab2.chr6 66895199 2 - 84719076 ----------GA i equCab2.chr6 C 0 I 6 s pteVam1.scaffold_12135 12161 2 - 44403 ----------GA i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906675 171 - 30916457 I e turTru2.JH490333 24601 135 + 53618 I e rheMac3.chr12 12803059 26 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2831686 0 - 6458163 C e gorGor3.chr2B 12208903 0 - 131632457 C e panTro4.chr2B 12046575 0 - 247518478 C e hg19.chr2 12108832 0 - 243199373 C e calJac3.chr6 11710902 0 - 158406734 C e papHam1.scaffold15394 27023 26 + 58077 I e felCat5.chrC1 9051594 53 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=6600.000000 s mm10.chr1_GL456221_random 64973 1 + 206961 C s rn5.chr9 29200298 1 - 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313520 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108832 1 - 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046575 1 - 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208903 1 - 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831686 1 - 6458163 C i nomLeu2.GL397366 C 0 C 0 s vicPac1.scaffold_4435 104502 1 - 111236 C i vicPac1.scaffold_4435 I 23 C 0 s oviAri1.chr2 18934564 1 - 263237078 C i oviAri1.chr2 I 23 C 0 s equCab2.chr6 66895207 1 - 84719076 C i equCab2.chr6 I 6 C 0 s myoLuc2.GL429770 4906846 1 - 30916457 C i myoLuc2.GL429770 I 171 I 29 s pteVam1.scaffold_12135 12163 1 - 44403 C i pteVam1.scaffold_12135 C 0 C 0 e turTru2.JH490333 24601 135 + 53618 I e rheMac3.chr12 12803059 26 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e calJac3.chr6 11710902 0 - 158406734 C e papHam1.scaffold15394 27023 26 + 58077 I e felCat5.chrC1 9051594 53 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-21950.000000 s mm10.chr1_GL456221_random 64974 5 + 206961 --CCC--CT s rn5.chr9 29200299 7 - 121549591 --CCCCGCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313521 5 + 10418462 --TAC--CT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108833 5 - 243199373 --ACC--CG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046576 5 - 247518478 --ACC--CG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208904 5 - 131632457 --ACC--CG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831687 5 - 6458163 --ACC--CG i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11710902 4 - 158406734 ---CC--CG i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104503 4 - 111236 -TGCC---- i vicPac1.scaffold_4435 C 0 I 1 s oviAri1.chr2 18934565 4 - 263237078 -TGCC---- i oviAri1.chr2 C 0 I 1 s equCab2.chr6 66895208 4 - 84719076 -TGCC---- i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_12135 12164 5 - 44403 TTACT---- i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906847 29 - 30916457 I e turTru2.JH490333 24601 135 + 53618 I e rheMac3.chr12 12803059 26 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27023 26 + 58077 I e felCat5.chrC1 9051594 53 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-452.000000 s mm10.chr1_GL456221_random 64979 6 + 206961 CTGAGT s rn5.chr9 29200306 6 - 121549591 CTGAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313526 6 + 10418462 CTGTGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108838 6 - 243199373 ATTCGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046581 6 - 247518478 ACTCGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208909 6 - 131632457 ATTCGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831692 6 - 6458163 ATTCGA i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11710906 6 - 158406734 ATTCGC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104508 6 - 111236 CTGTCC i vicPac1.scaffold_4435 I 1 I 1 s oviAri1.chr2 18934570 6 - 263237078 CTGTCC i oviAri1.chr2 I 1 I 1 s felCat5.chrC1 9051647 6 - 221441202 TTGAGC i felCat5.chrC1 I 53 I 266 s equCab2.chr6 66895213 6 - 84719076 CTGTGC i equCab2.chr6 I 1 C 0 s pteVam1.scaffold_12135 12169 6 - 44403 CTGCCT i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906847 29 - 30916457 I e turTru2.JH490333 24601 135 + 53618 I e rheMac3.chr12 12803059 26 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27023 26 + 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3102.000000 s mm10.chr1_GL456221_random 64985 2 + 206961 C-T s rn5.chr9 29200312 2 - 121549591 C-T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313532 3 + 10418462 CAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108844 2 - 243199373 T-T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046587 2 - 247518478 T-T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208915 2 - 131632457 T-T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831698 2 - 6458163 T-T i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11710912 2 - 158406734 T-T i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104515 2 - 111236 T-T i vicPac1.scaffold_4435 I 1 C 0 s oviAri1.chr2 18934577 2 - 263237078 T-T i oviAri1.chr2 I 1 C 0 s equCab2.chr6 66895219 2 - 84719076 C-T i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12175 2 - 44403 C-T i pteVam1.scaffold_12135 C 0 I 9 e myoLuc2.GL429770 4906847 29 - 30916457 I e turTru2.JH490333 24601 135 + 53618 I e rheMac3.chr12 12803059 26 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27023 26 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4110.000000 s mm10.chr1_GL456221_random 64987 2 + 206961 CT s rn5.chr9 29200314 2 - 121549591 CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313535 2 + 10418462 CC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108846 2 - 243199373 TT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046589 2 - 247518478 TT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208917 2 - 131632457 TT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831700 2 - 6458163 TT i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11710914 2 - 158406734 TT i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104517 2 - 111236 CT i vicPac1.scaffold_4435 C 0 I 1 s oviAri1.chr2 18934579 2 - 263237078 CC i oviAri1.chr2 C 0 I 1 s equCab2.chr6 66895221 1 - 84719076 -T i equCab2.chr6 C 0 I 3 s myoLuc2.GL429770 4906876 1 - 30916457 -T i myoLuc2.GL429770 I 29 I 17 e pteVam1.scaffold_12135 12177 9 - 44403 I e turTru2.JH490333 24601 135 + 53618 I e rheMac3.chr12 12803059 26 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27023 26 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-11864.000000 s mm10.chr1_GL456221_random 64989 2 + 206961 GG- s rn5.chr9 29200316 2 - 121549591 GG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313537 2 + 10418462 CA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108848 2 - 243199373 CA- i hg19.chr2 C 0 I 17 s panTro4.chr2B 12046591 2 - 247518478 CA- i panTro4.chr2B C 0 I 17 s gorGor3.chr2B 12208919 2 - 131632457 CA- i gorGor3.chr2B C 0 I 17 s nomLeu2.GL397366 2831702 2 - 6458163 CA- i nomLeu2.GL397366 C 0 I 17 s calJac3.chr6 11710916 2 - 158406734 CA- i calJac3.chr6 C 0 I 18 s vicPac1.scaffold_4435 104520 2 - 111236 -GG i vicPac1.scaffold_4435 I 1 C 0 s oviAri1.chr2 18934582 2 - 263237078 -AG i oviAri1.chr2 I 1 C 0 s equCab2.chr6 66895225 2 - 84719076 -AG i equCab2.chr6 I 3 C 0 s pteVam1.scaffold_12135 12186 2 - 44403 -GG i pteVam1.scaffold_12135 I 9 C 0 e myoLuc2.GL429770 4906877 17 - 30916457 I e turTru2.JH490333 24601 135 + 53618 I e rheMac3.chr12 12803059 26 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27023 26 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2492.000000 s mm10.chr1_GL456221_random 64991 1 + 206961 A s rn5.chr9 29200318 1 - 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313539 1 + 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108867 1 - 243199373 G i hg19.chr2 I 17 I 1 s panTro4.chr2B 12046610 1 - 247518478 G i panTro4.chr2B I 17 I 1 s gorGor3.chr2B 12208938 1 - 131632457 G i gorGor3.chr2B I 17 I 1 s nomLeu2.GL397366 2831721 1 - 6458163 G i nomLeu2.GL397366 I 17 I 1 s rheMac3.chr12 12803085 1 - 106825570 A i rheMac3.chr12 I 26 C 0 s papHam1.scaffold15394 27049 1 + 58077 A i papHam1.scaffold15394 I 26 I 85 s calJac3.chr6 11710936 1 - 158406734 G i calJac3.chr6 I 18 I 1 s vicPac1.scaffold_4435 104522 1 - 111236 A i vicPac1.scaffold_4435 C 0 C 0 s oviAri1.chr2 18934584 1 - 263237078 A i oviAri1.chr2 C 0 C 0 s equCab2.chr6 66895227 1 - 84719076 A i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12188 1 - 44403 A i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906877 17 - 30916457 I e turTru2.JH490333 24601 135 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4624.000000 s mm10.chr1_GL456221_random 64992 2 + 206961 AA s rn5.chr9 29200319 2 - 121549591 AA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313540 2 + 10418462 AG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108869 2 - 243199373 AG i hg19.chr2 I 1 C 0 s panTro4.chr2B 12046612 2 - 247518478 AG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12208940 2 - 131632457 AG i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2831723 2 - 6458163 AG i nomLeu2.GL397366 I 1 C 0 s calJac3.chr6 11710938 2 - 158406734 AG i calJac3.chr6 I 1 C 0 s vicPac1.scaffold_4435 104523 1 - 111236 -G i vicPac1.scaffold_4435 C 0 I 14 s oviAri1.chr2 18934585 1 - 263237078 -G i oviAri1.chr2 C 0 I 18 s equCab2.chr6 66895228 1 - 84719076 -A i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12189 1 - 44403 -G i pteVam1.scaffold_12135 C 0 I 1 e myoLuc2.GL429770 4906877 17 - 30916457 I e turTru2.JH490333 24601 135 + 53618 I e rheMac3.chr12 12803086 0 - 106825570 C e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27050 85 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-782.000000 s mm10.chr1_GL456221_random 64994 1 + 206961 G s rn5.chr9 29200321 1 - 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313542 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108871 1 - 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046614 1 - 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208942 1 - 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831725 1 - 6458163 C i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11710940 1 - 158406734 C i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 12190 1 - 44403 I e myoLuc2.GL429770 4906877 17 - 30916457 I e oviAri1.chr2 18934586 18 - 263237078 I e turTru2.JH490333 24601 135 + 53618 I e rheMac3.chr12 12803086 0 - 106825570 C e equCab2.chr6 66895229 0 - 84719076 C e tarSyr1.scaffold_175677 885 851 - 3989 T e vicPac1.scaffold_4435 104524 14 - 111236 I e papHam1.scaffold15394 27050 85 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=12612.000000 s mm10.chr1_GL456221_random 64995 9 + 206961 CCCAGAGAG s rn5.chr9 29200322 9 - 121549591 CCCAGAGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313543 9 + 10418462 TCAAAGGAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108872 9 - 243199373 TCTGAGGTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046615 9 - 247518478 TCTGAGGTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12208943 9 - 131632457 TCTGAGGTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831726 9 - 6458163 TCTGAGGTG i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11710941 9 - 158406734 TCTGAGGTG i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104538 9 - 111236 TCTGCCTTT i vicPac1.scaffold_4435 I 14 I 1 s oviAri1.chr2 18934604 9 - 263237078 CCCATTTAT i oviAri1.chr2 I 18 I 1 s equCab2.chr6 66895229 9 - 84719076 TCTGACGAG i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12191 9 - 44403 TCTGATGAG i pteVam1.scaffold_12135 I 1 C 0 e myoLuc2.GL429770 4906877 17 - 30916457 I e turTru2.JH490333 24601 135 + 53618 I e rheMac3.chr12 12803086 0 - 106825570 C e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27050 85 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-5080.000000 s mm10.chr1_GL456221_random 65004 3 + 206961 AAC- s rn5.chr9 29200331 3 - 121549591 AAC- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313552 3 + 10418462 AAC- i speTri2.JH393335 C 0 I 24 s hg19.chr2 12108881 3 - 243199373 AAG- i hg19.chr2 C 0 I 10 s panTro4.chr2B 12046624 3 - 247518478 AAG- i panTro4.chr2B C 0 I 10 s gorGor3.chr2B 12208952 3 - 131632457 AAG- i gorGor3.chr2B C 0 I 10 s nomLeu2.GL397366 2831735 3 - 6458163 AAG- i nomLeu2.GL397366 C 0 I 10 s rheMac3.chr12 12803086 3 - 106825570 AAG- i rheMac3.chr12 C 0 I 10 s calJac3.chr6 11710950 3 - 158406734 AAA- i calJac3.chr6 C 0 I 10 s vicPac1.scaffold_4435 104548 2 - 111236 -AG- i vicPac1.scaffold_4435 I 1 C 0 s oviAri1.chr2 18934614 2 - 263237078 -AG- i oviAri1.chr2 I 1 C 0 s equCab2.chr6 66895238 3 - 84719076 -AGC i equCab2.chr6 C 0 I 18 s myoLuc2.GL429770 4906894 3 - 30916457 -AAC i myoLuc2.GL429770 I 17 I 190 s pteVam1.scaffold_12135 12200 3 - 44403 -AAC i pteVam1.scaffold_12135 C 0 I 18 e turTru2.JH490333 24601 135 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27050 85 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=167422.000000 s mm10.chr1_GL456221_random 65007 51 + 206961 TCCTTCAGGGGCCTCCAAAGAGGAGAAAAAGGAAAGTGAAATTGCTTAAC--T s rn5.chr9 29200334 51 - 121549591 TCCTTCGGAGCCCTCCAAAGAGGAGAAAAAGGAAAGTGAAATTGTTCAAC--T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313579 53 + 10418462 TCCCTTGGGGTTTGCGTCAAAAGGGGAAGAGAAAAGTGAAATTGCCCAACGGT i speTri2.JH393335 I 24 C 0 s hg19.chr2 12108894 49 - 243199373 CCCCTCGGTG--CTCAGTCAAAGAGGAAAAGAAAAGTGAAATTGCCTAAC--T i hg19.chr2 I 10 C 0 s panTro4.chr2B 12046637 49 - 247518478 CCCCTCGGTG--CTCAGTCAAAGAGGAAAAGAAAAGTGAAATTGCCTAAC--T i panTro4.chr2B I 10 C 0 s gorGor3.chr2B 12208965 49 - 131632457 CCCCTCGGTG--CTCAGTCAAAGAGGAAAAGAAAAGTGAAATTGCCTAAC--T i gorGor3.chr2B I 10 C 0 s nomLeu2.GL397366 2831748 49 - 6458163 CCCCTCGGTG--CTCAGTCGAAGAGGAAAAGAAAAGTGAAATTGCCTAAC--C i nomLeu2.GL397366 I 10 C 0 s rheMac3.chr12 12803099 49 - 106825570 CCCCTCGGGG--CTCAGCCAAAGAGGAAAAGAAAAGTGAAATTGCCTAAC--C i rheMac3.chr12 I 10 C 0 s calJac3.chr6 11710963 49 - 158406734 CCCCTTGTGG--CTGGGCCAAAGAAGAGAAGAAAAGTGAAACCAACTAAC--C i calJac3.chr6 I 10 C 0 s vicPac1.scaffold_4435 104550 51 - 111236 TCCCTCAGATGTGGCATCTAAAGGGTAAACGGAAAGTGAAGTTGTGGAAC--A i vicPac1.scaffold_4435 C 0 I 2 s oviAri1.chr2 18934616 51 - 263237078 CCCCTCGGGTGTGGCACCTAAAGGGTAAAAGAAAAGTGAAACAGCTGAAC--T i oviAri1.chr2 C 0 I 52124 s equCab2.chr6 66895259 50 - 84719076 -TCCTTGAGTGTGGCACCCAAAGGGTAAAAGAAAAATGAAGTTGCCGAAC--A i equCab2.chr6 I 18 I 2 s pteVam1.scaffold_12135 12221 50 - 44403 -GCTTCGGGTATTGCACCCAAAGGGTAAAAGAAAAGTGAAATTGCCGAGC--A i pteVam1.scaffold_12135 I 18 I 2 e myoLuc2.GL429770 4906897 190 - 30916457 I e turTru2.JH490333 24601 135 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27050 85 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-5269.000000 s mm10.chr1_GL456221_random 65058 2 + 206961 A--T s rn5.chr9 29200385 2 - 121549591 A--T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313632 2 + 10418462 G--T i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108943 4 - 243199373 AGCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046686 4 - 247518478 AGCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209014 4 - 131632457 AGCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831797 4 - 6458163 AGCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803148 4 - 106825570 AGCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711012 4 - 158406734 ACCT i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104603 2 - 111236 --GT i vicPac1.scaffold_4435 I 2 C 0 s equCab2.chr6 66895311 2 - 84719076 --GT i equCab2.chr6 I 2 C 0 s pteVam1.scaffold_12135 12273 2 - 44403 --GT i pteVam1.scaffold_12135 I 2 C 0 e myoLuc2.GL429770 4906897 190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24601 135 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27050 85 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=7800.000000 s mm10.chr1_GL456221_random 65060 1 + 206961 G s rn5.chr9 29200387 1 - 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313634 1 + 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108947 1 - 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046690 1 - 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209018 1 - 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831801 1 - 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803152 1 - 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711016 1 - 158406734 G i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104605 1 - 111236 G i vicPac1.scaffold_4435 C 0 C 0 s turTru2.JH490333 24736 1 + 53618 G i turTru2.JH490333 I 135 I 62 s equCab2.chr6 66895313 1 - 84719076 G i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12275 1 - 44403 G i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906897 190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27050 85 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=36127.000000 s mm10.chr1_GL456221_random 65061 15 + 206961 ACAACACTGCACTAA s rn5.chr9 29200388 15 - 121549591 ACATCACTGTACTAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313635 15 + 10418462 GAGTGGCTGCACCAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108948 15 - 243199373 ACGTGGGTGCACCAA i hg19.chr2 C 0 I 3 s panTro4.chr2B 12046691 15 - 247518478 ACGTGGGTGCACCAA i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 12209019 15 - 131632457 ACGTGGGTGCACCAA i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 2831802 15 - 6458163 ACGTGGGTGCACCAA i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 12803153 15 - 106825570 ACGTAGGTGCACCAA i rheMac3.chr12 C 0 I 3 s calJac3.chr6 11711017 13 - 158406734 ACCTGGCTG--CCAG i calJac3.chr6 C 0 I 3 s vicPac1.scaffold_4435 104606 11 - 111236 ACGTGGCTAGA---- i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66895314 15 - 84719076 ACGTAGCTGCACCAG i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12276 15 - 44403 ACGTGAGTACATCGA i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906897 190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24737 62 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27050 85 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-6105.000000 s mm10.chr1_GL456221_random 65076 1 + 206961 -T s rn5.chr9 29200403 1 - 121549591 -C i rn5.chr9 C 0 C 0 s hg19.chr2 12108966 1 - 243199373 -T i hg19.chr2 I 3 C 0 s panTro4.chr2B 12046709 1 - 247518478 -T i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 12209037 1 - 131632457 -T i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 2831820 1 - 6458163 -T i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 12803171 1 - 106825570 -T i rheMac3.chr12 I 3 C 0 s papHam1.scaffold15394 27135 1 + 58077 -T i papHam1.scaffold15394 I 85 I 419 s calJac3.chr6 11711033 1 - 158406734 -T i calJac3.chr6 I 3 C 0 s equCab2.chr6 66895329 1 - 84719076 G- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12291 1 - 44403 C- i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906897 190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6313650 0 + 10418462 C e turTru2.JH490333 24737 62 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e vicPac1.scaffold_4435 104617 0 - 111236 C e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-14012.000000 s mm10.chr1_GL456221_random 65077 13 + 206961 --GCACTGCCCTCCA---------- s rn5.chr9 29200404 13 - 121549591 --GCACTGGCCCCCA---------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313650 11 + 10418462 --GCACCAATACT------------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108967 11 - 243199373 --ACAGTCCTCCC------------ i hg19.chr2 C 0 I 4 s panTro4.chr2B 12046710 11 - 247518478 --ACAGTCCTCCC------------ i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 12209038 11 - 131632457 --ACAGTCCTCCC------------ i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 2831821 11 - 6458163 --ACAGTCCTCCC------------ i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 12803172 11 - 106825570 --ACAGTCCTCCC------------ i rheMac3.chr12 C 0 I 4 s calJac3.chr6 11711034 11 - 158406734 --ACAGTCCTCTC------------ i calJac3.chr6 C 0 I 12 s vicPac1.scaffold_4435 104617 20 - 111236 --GTCCTCCCTCC--GCCC-CCCCA i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66895330 23 - 84719076 AGGCTGGCCTTCC--TTCTGCCCAA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12292 22 - 44403 ACACTATTGTCCC--ACCT-CCCAA i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906897 190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24737 62 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1087.000000 s mm10.chr1_GL456221_random 65090 2 + 206961 CC s calJac3.chr6 11711057 1 - 158406734 -C i calJac3.chr6 I 12 I 1 s vicPac1.scaffold_4435 104637 2 - 111236 CC i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66895353 2 - 84719076 TC i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12314 2 - 44403 CC i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906897 190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6313661 0 + 10418462 C e turTru2.JH490333 24737 62 + 53618 I e rheMac3.chr12 12803183 4 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2831832 4 - 6458163 I e gorGor3.chr2B 12209049 4 - 131632457 I e panTro4.chr2B 12046721 4 - 247518478 I e hg19.chr2 12108978 4 - 243199373 I e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29200417 0 - 121549591 C a score=-22765.000000 s mm10.chr1_GL456221_random 65092 16 + 206961 ------------CCCAGTCTCTGC------------CCCA s rn5.chr9 29200417 15 - 121549591 -------------CTAGGCTCTGC------------CCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313661 15 + 10418462 -------------CTAGCCTGTGC------------CCTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12108982 28 - 243199373 ------------CCCAATCTCCATGACGTCTCTCAGTCAA i hg19.chr2 I 4 C 0 s panTro4.chr2B 12046725 28 - 247518478 ------------CCCAATCTCCATGACGTCTCTCAGTCAA i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 12209053 28 - 131632457 ------------CCCAATCTCCATGACGTCTCTCAGTCAA i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 2831836 28 - 6458163 ------------CCCAATCTCCATGACGTCTCTCAGTCAA i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 12803187 28 - 106825570 ------------CCCAATCTCCATGACGTCCCTCAGTCAA i rheMac3.chr12 I 4 C 0 s calJac3.chr6 11711059 18 - 158406734 ----------------------CTTAGGTCTTGCAGTCAA i calJac3.chr6 I 1 C 0 s vicPac1.scaffold_4435 104639 16 - 111236 CCT-----CGT-CCCAGCCCGG------------------ i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66895355 21 - 84719076 TCTGAGGCTGT-CTCAGCCCCG------------------ i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_12135 12316 22 - 44403 TTCAAGGCGGTCCTCAGCCCCA------------------ i pteVam1.scaffold_12135 C 0 I 1 e myoLuc2.GL429770 4906897 190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24737 62 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=22056.000000 s mm10.chr1_GL456221_random 65108 5 + 206961 GAGGG s rn5.chr9 29200432 5 - 121549591 CAGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313676 5 + 10418462 GAGAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109010 5 - 243199373 GGGAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046753 5 - 247518478 GGGAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209081 5 - 131632457 GGGAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831864 5 - 6458163 GGGAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803215 5 - 106825570 GGGAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711077 5 - 158406734 GGGAG i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104655 4 - 111236 -GAAG i vicPac1.scaffold_4435 C 0 C 0 s turTru2.JH490333 24799 4 + 53618 -GGGG i turTru2.JH490333 I 62 I 83 s equCab2.chr6 66895377 4 - 84719076 -GGAG i equCab2.chr6 I 1 C 0 s pteVam1.scaffold_12135 12339 4 - 44403 -GGAG i pteVam1.scaffold_12135 I 1 C 0 e myoLuc2.GL429770 4906897 190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=90712.000000 s mm10.chr1_GL456221_random 65113 47 + 206961 GAGGAGCAAAGACAGCCCAA---GTCCCCAGAAACCTGGGACACCTGCTG s rn5.chr9 29200437 47 - 121549591 GAGGAGCAAAGACAGCCCAA---GTCCCCAGAAACCTGGGACCCCTGCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313681 22 + 10418462 GAGGA------ACGGGCCAA------CCCAGGAG---------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109015 49 - 243199373 GAGGAGCAGAGCCAGCCCCACGAGGCCACGGAAGACAGGGTCACTTGTT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046758 49 - 247518478 GAGGAGCAGAGCCAGCCCCACGAGGCCACGGAAGACAGGGTCACTTGTT- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209086 49 - 131632457 GAGGAGCAGAGCCAGCCCCACGAGGCCACAGAAGACAGGGTCACTTGTT- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831869 49 - 6458163 GAGGAGCAGAGCCAGCCCCACGAGGCCACGGAAGACAGGGTCACTTGTT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803220 49 - 106825570 GAGGAGCAAAGCCAGCCCCACGAGGCCACAGAAGACGGGGTCACTTTTT- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711082 49 - 158406734 GAGGAGCGGAGCCAGCCCCACGAGGCCAAGGAAGATGGGGTCGTTTGTT- i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104659 43 - 111236 GAGGAGCAGGGCCGGCCCCTGC-ATTCAAGGATAA--GAGCAGACC---- i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66895381 45 - 84719076 GAGGAGCAGGGCCAGTCCCAGGCATCCACAGAAGA--GAGCGGGCTG--- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12343 43 - 44403 GAGGAGCATGGTCAGACCCAGG------CGGAAGATGGGGCCACTTGTT- i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4906897 190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24803 83 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=9390.000000 s mm10.chr1_GL456221_random 65160 2 + 206961 CC s rn5.chr9 29200484 2 - 121549591 CC i rn5.chr9 C 0 C 0 s hg19.chr2 12109064 2 - 243199373 CC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046807 2 - 247518478 CC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209135 2 - 131632457 CC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831918 2 - 6458163 CC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803269 2 - 106825570 CC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711131 2 - 158406734 CC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104702 2 - 111236 CC i vicPac1.scaffold_4435 C 0 I 1 s equCab2.chr6 66895426 1 - 84719076 -C i equCab2.chr6 C 0 I 7 s myoLuc2.GL429770 4907087 1 - 30916457 -C i myoLuc2.GL429770 I 190 I 400 s pteVam1.scaffold_12135 12386 1 - 44403 -C i pteVam1.scaffold_12135 C 0 I 1 e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6313703 0 + 10418462 C e turTru2.JH490333 24803 83 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=42487.000000 s mm10.chr1_GL456221_random 65162 30 + 206961 TTCTAAGGAAAGAAGGTGGAAGGGTC----TGTT s rn5.chr9 29200486 30 - 121549591 CTCCAAGGAAAGAAGGTGGGAGGGTT----TGTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313703 29 + 10418462 TTCCTGAAAGACAGGGTGGGAAAGTC----CA-T i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109066 28 - 243199373 TGCCAAGGAAAGAGGGTGGAAAAGTC----A--T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046809 28 - 247518478 TGCCAAGGAAAGAGGGTGGAAAAGTC----A--T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209137 28 - 131632457 TGCCAAGGAAAGAGGGTGGAAAAGTC----A--T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831920 28 - 6458163 TGCCAAGGAAAGAGGGTGGAAAAGTC----A--T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803271 28 - 106825570 TGCCAAGGAAAGAGGGTTGTAAAGTC----A--T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711133 28 - 158406734 TGCCAAGGAAAGAGGGTGAAAAAGTC----G--T i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104705 26 - 111236 TGT-AGGAAAAAAGGACAG-AGGGCATT------ i vicPac1.scaffold_4435 I 1 C 0 s equCab2.chr6 66895434 26 - 84719076 TGTAAAGGAGGGAGGGCAGAAAAGTC-------- i equCab2.chr6 I 7 C 0 s pteVam1.scaffold_12135 12388 29 - 44403 TGCAAAGGCAGGAGAACAG-AAAGTCTAAT---- i pteVam1.scaffold_12135 I 1 C 0 e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24803 83 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=10682.000000 s mm10.chr1_GL456221_random 65192 3 + 206961 TCA s rn5.chr9 29200516 3 - 121549591 TCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313732 3 + 10418462 TCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109094 3 - 243199373 TCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046837 3 - 247518478 TCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209165 3 - 131632457 TCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831948 3 - 6458163 TCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803299 3 - 106825570 TCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711161 3 - 158406734 TCC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104731 3 - 111236 CCA i vicPac1.scaffold_4435 C 0 C 0 s turTru2.JH490333 24886 2 + 53618 -GA i turTru2.JH490333 I 83 I 227 s equCab2.chr6 66895460 3 - 84719076 CCT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_12135 12417 3 - 44403 TCA i pteVam1.scaffold_12135 C 0 C 0 e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-7889.000000 s mm10.chr1_GL456221_random 65195 4 + 206961 ---GCGA s rn5.chr9 29200519 4 - 121549591 ---GCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313735 4 + 10418462 ---ACTA i speTri2.JH393335 C 0 I 2 s hg19.chr2 12109097 4 - 243199373 ---ACTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046840 4 - 247518478 ---ACTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209168 4 - 131632457 ---ACTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831951 4 - 6458163 ---ACTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803302 4 - 106825570 ---ACTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711164 4 - 158406734 ---ACTT i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104734 4 - 111236 GCGA--- i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66895463 4 - 84719076 TTAA--- i equCab2.chr6 C 0 I 5 s pteVam1.scaffold_12135 12420 4 - 44403 TTAA--- i pteVam1.scaffold_12135 C 0 I 5 e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24888 227 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051653 266 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4421.000000 s mm10.chr1_GL456221_random 65199 2 + 206961 AG s rn5.chr9 29200523 2 - 121549591 AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313741 2 + 10418462 AG i speTri2.JH393335 I 2 C 0 s hg19.chr2 12109101 2 - 243199373 AA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046844 2 - 247518478 AA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209172 2 - 131632457 AA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831955 2 - 6458163 AA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803306 2 - 106825570 AA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711168 2 - 158406734 AA i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104738 2 - 111236 GG i vicPac1.scaffold_4435 C 0 I 24 s felCat5.chrC1 9051919 2 - 221441202 AT i felCat5.chrC1 I 266 I 5552 s equCab2.chr6 66895472 2 - 84719076 AC i equCab2.chr6 I 5 C 0 s pteVam1.scaffold_12135 12429 2 - 44403 AG i pteVam1.scaffold_12135 I 5 C 0 e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24888 227 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=81848.000000 s mm10.chr1_GL456221_random 65201 28 + 206961 G--GCTCAGAGCTGT-CTAAGGCCAGCT----GGC s rn5.chr9 29200525 28 - 121549591 A--GCTCCTAGCTGT-CTGAGGCCAGCT----GGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313743 29 + 10418462 G--GACCACTGTTGTCCTGAGATGAGGT----GGC i speTri2.JH393335 C 0 I 1 s hg19.chr2 12109103 31 - 243199373 GCAGATCAAAGTTGTTTTGAGGTAAGGT----GGC i hg19.chr2 C 0 I 1 s panTro4.chr2B 12046846 31 - 247518478 GCAGATCAAAGTTGTTTTGAGGTAAGGT----GGC i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12209174 31 - 131632457 GCAGATCAAAGTTGTTTTGAGGTAAGGT----GGC i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2831957 31 - 6458163 GCAGATCAAAGTTGTTTTGAGGTAAGGT----GGC i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12803308 31 - 106825570 GCAAGTCGAAGTTGTTTTGAGGTAAGAT----GCC i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11711170 31 - 158406734 GCAGATCAAAGTTGTTTTGAGGTAAGAT----GGC i calJac3.chr6 C 0 I 1 s vicPac1.scaffold_4435 104764 29 - 111236 --AACTCAAACTGGTTCCGAGGTGAAGT----GCC i vicPac1.scaffold_4435 I 24 I 3 s equCab2.chr6 66895474 32 - 84719076 --AGATCACAGCTGTTTTGAGGTAGGGTTTGAGG- i equCab2.chr6 C 0 I 2 s pteVam1.scaffold_12135 12431 29 - 44403 --GAATCAAAGTTGTTTTGAGGTGAGGT----GGC i pteVam1.scaffold_12135 C 0 I 2 e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24888 227 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2826.000000 s mm10.chr1_GL456221_random 65229 2 + 206961 TG s rn5.chr9 29200553 2 - 121549591 TG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313773 2 + 10418462 TG i speTri2.JH393335 I 1 C 0 s hg19.chr2 12109135 2 - 243199373 TC i hg19.chr2 I 1 C 0 s panTro4.chr2B 12046878 2 - 247518478 TC i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12209206 2 - 131632457 TC i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2831989 2 - 6458163 TC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12803340 2 - 106825570 TC i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11711202 2 - 158406734 TC i calJac3.chr6 I 1 C 0 e pteVam1.scaffold_12135 12460 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24888 227 + 53618 I e equCab2.chr6 66895506 2 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e vicPac1.scaffold_4435 104793 3 - 111236 I e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=302956.000000 s mm10.chr1_GL456221_random 65231 142 + 206961 ------GTTAGGAT--AGGAAGGAAGTGGTCCCTTAACCCTAAGCG---GGGGCGGTGCC--TGGAAAGA-CCAGGAAGAGTTAGATTGTCTGCAGTCTC---TCAGAC-TTGGAACTGTCCTGGCACCCTAGTAAGTCAGAACCAGAGAAGCTGGGACC s rn5.chr9 29200555 136 - 121549591 ------GTTAGTAA--AGGAAGGAACT----CCTTTGCCCTTTGC----TGGGTGGTGCC--TGGAAGGA-TGAGGAAGAG-TAGGTCGTCCGCAGTCTC---TCTGGC-CTGTGGCTGTCCCGGCAGCCCCTTGAGTCAGAACCAGAGGAGGTGGCATC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313775 139 + 10418462 ------GTTCACATGGGGGAAGCAAATGCCATGTTTGCCCCTTCCGCTTGCCACGGTGGC--TGGGAAAG-TGAAGCCTTG--AGAATGT------TCTC---TCAGGC-CTGTGCCTGGCCAGTCACCTTGGCCAGCCTGGACTGGAGGAGTCAGACTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109137 147 - 243199373 ------ATGAGG----AGGAAGTAAACTCTGTATTTGTCCCCACCCCTTGCTGAGGTGGC--TGAGAAGG-ACAAGTGAAGACCAGACATTTCAAATCTTCAGTCAGGCTCCAGGGCTGGCCATGCACCTTAGTGAGCCTGGGCTGGATGGCTTAGGCCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12046880 147 - 247518478 ------ATGAGG----AGGAAGTAAACTCTGTATTTGTCCCCACCCCTTGCTGAGGTGGC--TGAGAAGG-ACAAGTGAAGACCAGACATTTCAAATCTTCAGTCAGGCTCCAGGGCTGGCCATGCACCTTAGTGAGCCTGGGCTGGATGGCTTAGGCCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209208 147 - 131632457 ------ATGAGG----AGGAAGTAAACTCTGTATTTGTCCCTACCCCTTGCTGAGGTGGC--TGAGAAGG-ACAAGTGAAGACCAGACATTTAAAATCTTCAGTCAGGCTCCAGGGCTGGCCATGCACCTTAGTGAGCCTGGGCTGGATGGCTTAGGCCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2831991 147 - 6458163 ------ATGAGG----AGGAAGTAAACTCTGTATTTGTCCCTATCCCTTGCTGAGGTGGC--TGAGAAGG-ATAAGTGAAGACCAGACATTTCAAATCTTCAGTCAGGCTCCAGGGCTGGCCATGCACCTTAGTGAGCCTGGGCTGGATGGGTTAGGCCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803342 147 - 106825570 ------ATGAGG----AGGAAGTAAACTCCATATTTGTCCCTACCCCTTGCTGAGGTGGC--TGAGAAGG-ACAAGTGAAGACCAGGCATTTGAAATCTTCAGTCAGGCTCCAGGGCTGGCCATGCACCTTAGTGAGCCTGGGCTGGATGGGTTAGGCCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711204 147 - 158406734 ------ATGAGG----AGGGAGCAAACTCCACGTTTGTCCCTACCCCTTGCTGAAGTGGC--TGAGAAGG-ACAAGTGAAGACCAGGTGTTTCAAATCTTCAGTCAGGCTCCAGGGCTAGCCATACACCTTGGTGAGCCTGGGCTGGATGAGTTAGGCCC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104796 129 - 111236 GTGTTGACGGGG----AGGAAGAAAATTGCATGTTTCCCCCTGCCCCTTGCCAAGGTGGCTGTGAGAAGGAAAAAGGGAAAGCCAGACTTTTGAGATCTTCCCTTAGGCCCATGGGCTGG---------------------------ACAATTTAGACCC i vicPac1.scaffold_4435 I 3 I 4 s equCab2.chr6 66895508 136 - 84719076 GTTTATATGGGA----AGGAA-------TTATATTG-----------CTGTGGGGTGGTT-GTGAGAAAG-TAAAGAGAAAGCCAGACATTTCAGATCTTCTCTCAGGCCCATGGGCTGGCTGGACACAGCAGTGAGCCCGGACTAAACGAGTTAGGCCC i equCab2.chr6 I 2 C 0 s pteVam1.scaffold_12135 12462 153 - 44403 AGTTATATGGAG----AGGAAGTGAACTTTGTATTTGCCCCTTCCCCTTGCTGAGATGGC-GTGAAAAGG-GACAGGGAAAGCCAAAGATTTCTGGTCTTCTCTCAGGCCCAGGGGCTGG-TGGGCACAGTAGTGAGCCTGGACTGGACGAGGAAGGCCC i pteVam1.scaffold_12135 I 2 n 2 e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24888 227 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=25290.000000 s mm10.chr1_GL456221_random 65373 31 + 206961 TGATAATTGAGCAGCAGAGTAGGAAAAGTC---G s rn5.chr9 29200691 34 - 121549591 TGATATTTGAACAGCAGAGTAGGAAAAGCCAGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313914 18 + 10418462 AGTTATTGGAG--GTAGAG--------------A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109284 33 - 243199373 AG-TGTTTGGACATGGGGCCAGGGAGAACTGAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047027 33 - 247518478 AG-TGTTTGGACATGGGGCCAGAGAGAACTGAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209355 33 - 131632457 AG-TGTTCGGACATGGGGCCAGAGAGAACTGAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832138 33 - 6458163 AG-TGTTTGGACATGGGGCCAGAGAGAACTGAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803489 33 - 106825570 AG-TGATTGGACATGGCGCCAGAGAGAACTGAAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711351 33 - 158406734 AG-TGTTTGGAGATGGCCCTAGAGAGAACTGAAA i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104929 25 - 111236 -----TTCAGACACAGAACTGGAGAGAGAA---- i vicPac1.scaffold_4435 I 4 C 0 s equCab2.chr6 66895644 29 - 84719076 AG-TGTTCAGACGCAGAGCTAGAGAGAGCT---- i equCab2.chr6 C 0 I 2 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 24888 227 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-13952.000000 s mm10.chr1_GL456221_random 65404 3 + 206961 --GGT s rn5.chr9 29200725 3 - 121549591 --GGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313932 3 + 10418462 --CTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109317 3 - 243199373 --TAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047060 3 - 247518478 --TAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209388 3 - 131632457 --TAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832171 3 - 6458163 --TAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803522 3 - 106825570 --TAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711384 3 - 158406734 --TAC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104954 3 - 111236 AAT-- i vicPac1.scaffold_4435 C 0 C 0 s turTru2.JH490333 25115 3 + 53618 AAT-- i turTru2.JH490333 I 227 I 28 s equCab2.chr6 66895675 3 - 84719076 AAT-- i equCab2.chr6 I 2 I 2 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=6833.000000 s mm10.chr1_GL456221_random 65407 26 + 206961 GTGGCTTCAT---AAA----------GTTTTTGAATCTT s rn5.chr9 29200728 29 - 121549591 GTGGCTTTGTTTCCGA----------GCTTCTGACTTTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313935 26 + 10418462 GTGGCATTAG---AAA----------GCTCTCAGCCTCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109320 26 - 243199373 CATGCATTAG---AAA----------GTGGGGGAGATGC i hg19.chr2 C 0 I 13 s panTro4.chr2B 12047063 26 - 247518478 CATGCATTAT---AAA----------GTGTGGGAGATGC i panTro4.chr2B C 0 I 13 s gorGor3.chr2B 12209391 26 - 131632457 CATGCATTAT---AAA----------GTGGGGGAGATGC i gorGor3.chr2B C 0 I 13 s nomLeu2.GL397366 2832174 26 - 6458163 CATGCATTAT---AAA----------GTGGGGGAGATGC i nomLeu2.GL397366 C 0 I 13 s rheMac3.chr12 12803525 24 - 106825570 CATGCATTAT---AAA----------GTAGGGGAGAT-- i rheMac3.chr12 C 0 I 8 s calJac3.chr6 11711387 26 - 158406734 CTTGCATTAT---AAA----------GTGAGGGAGATGT i calJac3.chr6 C 0 I 13 s vicPac1.scaffold_4435 104957 13 - 111236 --------------------------ATTCTTCAAATAT i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66895680 36 - 84719076 TTGGCATTAT---AAGGGGAGAAGTTGTTCTTCAAATTT i equCab2.chr6 I 2 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25118 28 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=430.000000 s mm10.chr1_GL456221_random 65433 1 + 206961 C s rn5.chr9 29200757 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313961 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s calJac3.chr6 11711426 1 - 158406734 C i calJac3.chr6 I 13 I 2 s vicPac1.scaffold_4435 104970 1 - 111236 C i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66895716 1 - 84719076 C i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25118 28 + 53618 I e rheMac3.chr12 12803549 8 - 106825570 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832200 13 - 6458163 I e gorGor3.chr2B 12209417 13 - 131632457 I e panTro4.chr2B 12047089 13 - 247518478 I e hg19.chr2 12109346 13 - 243199373 I e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3785.000000 s mm10.chr1_GL456221_random 65434 1 + 206961 T s rn5.chr9 29200758 1 - 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313962 1 + 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109359 1 - 243199373 T i hg19.chr2 I 13 C 0 s panTro4.chr2B 12047102 1 - 247518478 T i panTro4.chr2B I 13 C 0 s gorGor3.chr2B 12209430 1 - 131632457 T i gorGor3.chr2B I 13 C 0 s nomLeu2.GL397366 2832213 1 - 6458163 C i nomLeu2.GL397366 I 13 C 0 s rheMac3.chr12 12803557 1 - 106825570 T i rheMac3.chr12 I 8 C 0 s calJac3.chr6 11711429 1 - 158406734 T i calJac3.chr6 I 2 C 0 s vicPac1.scaffold_4435 104971 1 - 111236 T i vicPac1.scaffold_4435 C 0 I 1 s equCab2.chr6 66895717 1 - 84719076 T i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25118 28 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=6600.000000 s mm10.chr1_GL456221_random 65435 1 + 206961 G s rn5.chr9 29200759 1 - 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313963 1 + 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109360 1 - 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047103 1 - 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209431 1 - 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832214 1 - 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803558 1 - 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711430 1 - 158406734 G i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104973 1 - 111236 G i vicPac1.scaffold_4435 I 1 C 0 s turTru2.JH490333 25146 1 + 53618 G i turTru2.JH490333 I 28 I 13 s equCab2.chr6 66895718 1 - 84719076 G i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-6590.000000 s mm10.chr1_GL456221_random 65436 12 + 206961 AAGG-----TAGCTAGA s rn5.chr9 29200760 9 - 121549591 TA--------AGCTGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313964 17 + 10418462 GAGAGCACCCAGAGGTA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109361 13 - 243199373 AAAG----CAGACAGAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047104 13 - 247518478 AAAG----CAGACAGAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209432 13 - 131632457 AAAG----CAGACAGAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832215 13 - 6458163 AAAG----CTCTCTCAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803559 13 - 106825570 AAAG----CAGACAGAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711431 13 - 158406734 AAAG----CAGACAGAG i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104974 12 - 111236 GAAG----CAGCCAGA- i vicPac1.scaffold_4435 C 0 I 1 s equCab2.chr6 66895720 12 - 84719076 AGAG----CAGCCAGA- i equCab2.chr6 I 1 I 5 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25147 13 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-10336.000000 s mm10.chr1_GL456221_random 65448 3 + 206961 GCA-- s rn5.chr9 29200769 3 - 121549591 GTG-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313981 3 + 10418462 GGA-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109374 3 - 243199373 GTA-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047117 3 - 247518478 GTA-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209445 3 - 131632457 GTA-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832228 2 - 6458163 CT--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803572 3 - 106825570 GTA-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711444 3 - 158406734 GTA-- i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 104987 3 - 111236 --GCC i vicPac1.scaffold_4435 I 1 I 2 s turTru2.JH490333 25160 3 + 53618 --GCC i turTru2.JH490333 I 13 I 270 s equCab2.chr6 66895737 1 - 84719076 --G-- i equCab2.chr6 I 5 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=14739.000000 s mm10.chr1_GL456221_random 65451 9 + 206961 AGAGACCGC s rn5.chr9 29200772 9 - 121549591 AGAGACCTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313984 9 + 10418462 AAAGACTCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109377 9 - 243199373 AAAGACAAC i hg19.chr2 C 0 I 1 s panTro4.chr2B 12047120 9 - 247518478 AAAGACAAC i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12209448 9 - 131632457 AAAGACAAC i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2832230 8 - 6458163 -CCTCCAAC i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12803575 9 - 106825570 AAAGACAAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711447 9 - 158406734 AGAGACAGC i calJac3.chr6 C 0 I 1 s vicPac1.scaffold_4435 104992 9 - 111236 AAAGAACCC i vicPac1.scaffold_4435 I 2 C 0 s equCab2.chr6 66895738 9 - 84719076 AGAGAACTC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25163 270 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27136 419 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1925.000000 s mm10.chr1_GL456221_random 65460 1 + 206961 C s rn5.chr9 29200781 1 - 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313993 1 + 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109387 1 - 243199373 C i hg19.chr2 I 1 C 0 s panTro4.chr2B 12047130 1 - 247518478 C i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12209458 1 - 131632457 C i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2832239 1 - 6458163 C i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12803584 1 - 106825570 T i rheMac3.chr12 C 0 I 1 s papHam1.scaffold15394 27555 1 + 58077 T i papHam1.scaffold15394 I 419 I 50 s calJac3.chr6 11711457 1 - 158406734 C i calJac3.chr6 I 1 C 0 s vicPac1.scaffold_4435 105001 1 - 111236 T i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66895747 1 - 84719076 T i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25163 270 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=87212.000000 s mm10.chr1_GL456221_random 65461 58 + 206961 CCC--CAACCCCGCCCACACACCTCCAACCAACCAAAGGCAAGT-GCAGAGAATCCAGGCA s rn5.chr9 29200782 59 - 121549591 CCCCTCATCCCCACCCACACACTTCC-ACCAACCAAAGGCAAGT-GCAGAGAATCAGGGCG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6313994 41 + 10418462 CCC---------------ACTCCTCC----AACCAAAGGCAGAT-GCAGAGAATTGGAGCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109388 41 - 243199373 -------------TCTCAACTCCTCC----AGCCAAAGGCAAGT-GCTGAGGTT--GGGCA i hg19.chr2 C 0 I 20 s panTro4.chr2B 12047131 41 - 247518478 -------------TCTCAACTCCTCC----AGCCAAAGGCAAGT-GCTGAGGTT--GGGCA i panTro4.chr2B C 0 I 20 s gorGor3.chr2B 12209459 41 - 131632457 -------------TCTCAACTCCTCC----AGCCAAAGGCAAGT-GCTGAGGTT--GGGCA i gorGor3.chr2B C 0 I 20 s nomLeu2.GL397366 2832240 41 - 6458163 -------------TCTCAACTCCTCC----AACCAAAGGCAAGT-GCTGAGGTT--GGGCA i nomLeu2.GL397366 C 0 I 20 s rheMac3.chr12 12803586 38 - 106825570 -------------TCTCAA---CTCC----AACCAAATGCAAGT-GCAGAGGTT--GGGCA i rheMac3.chr12 I 1 I 8 s calJac3.chr6 11711458 41 - 158406734 -------------TCTCAACTCCTCC----AGCCAAAGGCAAGT-GCTGAGGTT--GGGCA i calJac3.chr6 C 0 I 4 s vicPac1.scaffold_4435 105002 41 - 111236 --------------CCCTACTCCTGC----AACCAGAAGGAAATAACTAAATTT--GGGCA i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66895748 40 - 84719076 --------------CCCAAATCCTGC----AACCAGAGGAAAGT-GCCAGGTTT--GGTCA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25163 270 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27556 50 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-35509.000000 s mm10.chr1_GL456221_random 65519 7 + 206961 G-------------------AGC-----TGC s rn5.chr9 29200841 7 - 121549591 G-------------------GAC-----AGC i rn5.chr9 C 0 I 1 s speTri2.JH393335 6314035 26 + 10418462 GAGGCCAAAGCGGAATTCTAAGT-----TGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109449 4 - 243199373 -------------------AAGT-------- i hg19.chr2 I 20 I 4 s panTro4.chr2B 12047192 4 - 247518478 -------------------AAGT-------- i panTro4.chr2B I 20 I 4 s gorGor3.chr2B 12209520 4 - 131632457 -------------------AAGT-------- i gorGor3.chr2B I 20 I 4 s nomLeu2.GL397366 2832301 4 - 6458163 -------------------AAGT-------- i nomLeu2.GL397366 I 20 I 4 s rheMac3.chr12 12803632 6 - 106825570 -------------------AGGTGC------ i rheMac3.chr12 I 8 I 14 s papHam1.scaffold15394 27606 6 + 58077 -------------------AGGTGC------ i papHam1.scaffold15394 I 50 I 5135 s calJac3.chr6 11711503 7 - 158406734 -------------------AAGT--GCA--- i calJac3.chr6 I 4 I 13 s vicPac1.scaffold_4435 105043 7 - 111236 ----------------GAGAAGC-------- i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66895788 7 - 84719076 ----------------GAGAAGC-------- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25163 270 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=328159.000000 s mm10.chr1_GL456221_random 65526 164 + 206961 -----------------------TTGCTAAG-GTGTGACACTGACAG-CGAGGCAAC-----ACAGGG------------CTT-------CAGCAATTTCACCATGGTCTTGAGAAC---AAGAGGCATCTCACAGAATTCGGAAGTGGATCACAGCCGAG--GCTATAGCCAGTCGGGGACAGTATCATTTTTGAAGAATGGGTGC-CTTACATTTAC s rn5.chr9 29200849 159 - 121549591 -----------------------TTGCATAG-GTGTGACCTTGACAG-TGAAGCAAG-----ACAGGG------------CTC-------CAGCAACTTCACCGTGGTCTTGAGAAC---CAGAGGCATCTCGTGGAATTTGGAAGTGGGTCACAGTCAAG--GCTTCAGCCA----GGGACAATA-CAGTTTTAAAGAAGGGGTGC-CTTACATTTAT i rn5.chr9 I 1 C 0 s speTri2.JH393335 6314061 168 + 10418462 -----------------------TTGTATGT-ACGGGCACTTCACAACCGCAGC---------CAGGG------------TGCCTGGGAACATCAGCTTCAGCCATTTCATCAGAACGCGGAGGAGAGCCTCCTGGA---TGGA---GGCTCAGAGCTGAGATGATCTAGACCTTCAAAGACAAGGAGATGCGGGAAGACAGGGCACACATCTGTTTAT i speTri2.JH393335 C 0 I 25 s hg19.chr2 12109457 185 - 243199373 -----------------------TCAAATAT-GTGGGCACTTTACAACAGCagccaggggtgactggg-aaaaaaatgagctt-------caaccatttcactgaaatcttgaggagagtgacagccttctcactggatggggaaagggtttggagctgagattatctagaccttcaaggacaatatgatacaggagga-tagctgt-attacaTTTAT i hg19.chr2 I 4 I 1 s panTro4.chr2B 12047200 185 - 247518478 -----------------------TCAAATAT-GTGGGCACTTTACAACAGCagccaggggtgactggg-aaaaaaataagctt-------caaccatttcactgaaatcttgaggagagtgacagccttctcactggatggggaaagggtttggagctgagattatctagaccttcaaggacaatatgatacaggagga-tagctgt-attacaTTTAT i panTro4.chr2B I 4 I 1 s gorGor3.chr2B 12209528 185 - 131632457 -----------------------TCAAATAT-GTGGGCACTTTACAACAGCagccaggggtgactggg-aaaaaaatgagctt-------caaccatttcactgaaatcttgaggagagtgacagccttctcactggagggggaaagggtttggagctgagattatctagaccttcaaggacaatatgatacaggagga-tagctgt-attacaTTTAT i gorGor3.chr2B I 4 I 1 s nomLeu2.GL397366 2832309 185 - 6458163 -----------------------TCAAATAT-GTGGGCACTTTACAACAGCAGCC-GGGGTGATTGGGAAAAAAAATGAGCTT-------CAACCATttcattgaaatcttgaggagagtgacatccttctcattggatggggaaagggtttggagctgagattatctagaccttcaaggacaatatgatacaggagga-tagctgt-attacaTTTAT i nomLeu2.GL397366 I 4 I 1 s rheMac3.chr12 12803652 186 - 106825570 -----------------------TCAAATACGGTGGGCACTTCACAACTGCagccaggggtgactggg-agaaaactgagctt-------caagcatctcactgaaatcttgaggaaagtgacagctttctcattggatggggaaatggtttggagctgagattatctagaccttcaaggacaatatgatacaggagga-tagctgt-attacaTTTAT i rheMac3.chr12 I 14 I 1 s calJac3.chr6 11711523 185 - 158406734 -----------------------TCAAATAC-ATGGGCACTTTACAACTGCagccaggggtaatggggaaaaaaaatgagctt-------ccagtatttcactgaaatcttgaggaaagtgacagccttctcattggacagggagagga-ttagagctgagattatctagaccttcaatgacaATATGATACTGGAGGA-TAGCTGT-ATGACATTTAT i calJac3.chr6 I 13 I 1 s vicPac1.scaffold_4435 105050 207 - 111236 CTGATGTGCAATTCTAAGTTTTCTTGAATAA-CGTGGCACTTTACAAACGCAACTGGAAGTGCTTAGG-GAAAAACTGAGCTT-------CAAATA-GTCACTGCAACCTCAAAGAAAGTGACAGGCTTCTCAGCGGATGGGGAAAGGGTTTGAAGCTGAGACTGCCTACACCTTACAGAACAATGTGATGCTAGGTAA-CAAGTGT-GTTACATGCAT i vicPac1.scaffold_4435 C 0 I 3 s equCab2.chr6 66895795 204 - 84719076 CTGATGTGCAATTCCAAGCTTTCTTGAATAT-GTGGGCACTTTACAAATGCAACCAGGAGTGATTGGG-GAAAAA-TGAGCTT-------CAACTA-GTTGCTGAAATCTCGAGGAGAGCAACAGGCTTCTC-TTGGATGGGGAAA-GGTCCAAAACTGAGATGACCTAGACCTTACAGGACAATGTGATGCTGGCTAA-CAAGGGC-ATTACATTTAT i equCab2.chr6 C 0 I 2 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25163 270 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-4027.000000 s mm10.chr1_GL456221_random 65690 2 + 206961 TC s rn5.chr9 29201008 2 - 121549591 TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6314254 2 + 10418462 TT i speTri2.JH393335 I 25 C 0 s hg19.chr2 12109643 2 - 243199373 TT i hg19.chr2 I 1 C 0 s panTro4.chr2B 12047386 2 - 247518478 TT i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12209714 2 - 131632457 TT i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2832495 2 - 6458163 TT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12803839 2 - 106825570 TT i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11711709 2 - 158406734 TT i calJac3.chr6 I 1 C 0 s vicPac1.scaffold_4435 105260 1 - 111236 T- i vicPac1.scaffold_4435 I 3 I 1 s turTru2.JH490333 25433 1 + 53618 T- i turTru2.JH490333 I 270 I 74 s equCab2.chr6 66896001 1 - 84719076 T- i equCab2.chr6 I 2 I 2 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=88714.000000 s mm10.chr1_GL456221_random 65692 54 + 206961 TGTACAACTGTT-GCTCTTATCTGGAATGCTCATTCTCATTCTGTAAG---------------TTAGAAA s rn5.chr9 29201010 44 - 121549591 TGCACACCTTTT-GCACTTAGC-------GCCACTCTCCTTCCGTG------------------TGAGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6314256 66 + 10418462 TGTTTATTTGTT-TTTTTTACT---ATACCTGACCCTCATTCTGAAAAGGATCTGAAACAACTCTCAAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109645 64 - 243199373 TGCACACAAttt-ttcatttat-----acccagccctcattctgtaaaggatttgaaacaatttacaaaa i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047388 64 - 247518478 TGCACACAAttt-ttcatttat-----acccagccctcattctgtaaaggatttgaaacaatttacaaaa i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209716 64 - 131632457 TGCACACAATTT-TTCATTTAT-----ACCCAGCCCTCATTCTGTAAAGGATTTGAAACAATTTACAAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832497 43 - 6458163 TGCACACAATT---------------------------ATTCTGTAAAGGATTTGAAACAATTTACAAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803841 64 - 106825570 TACACACAAttt-ttcatttat-----acccagccctcattctgtaaaggatttgaaacaatttacaaaa i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711711 47 - 158406734 TGTACACAATTT-----------------------CTCATTCTGTAAAGGATTTTAAATAATTTACAAAA i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 105262 62 - 111236 --TGCACGAttttttcacttgt-----acctggctctcattctgtaaaggatttgaagtaacttagaaa- i vicPac1.scaffold_4435 I 1 C 0 s equCab2.chr6 66896004 62 - 84719076 --CACATAAttttttcatttat-----acccagccctcattctgtaaaggatttgaggcaacttacaga- i equCab2.chr6 I 2 I 10 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25434 74 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=6006.000000 s mm10.chr1_GL456221_random 65746 1 + 206961 A s rn5.chr9 29201054 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6314322 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109709 1 - 243199373 a i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047452 1 - 247518478 a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209780 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832540 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803905 1 - 106825570 a i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711758 1 - 158406734 A i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 105324 1 - 111236 a i vicPac1.scaffold_4435 C 0 I 10 s turTru2.JH490333 25508 1 + 53618 A i turTru2.JH490333 I 74 I 3678 s equCab2.chr6 66896076 1 - 84719076 a i equCab2.chr6 I 10 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=217636.000000 s mm10.chr1_GL456221_random 65747 106 + 206961 C---------CA--GCCTG------AAGTGGAAAGGTAAAGAAACAGGCATAAAGATGCAAATA----AAACAAAAGCAACCAACAGAAGCCTGGAAATAACAGGCAAAAC--AGAGGCAGAGAC-------------------AAGG- s rn5.chr9 29201055 107 - 121549591 C---------TA--GCTTG-------CGTGAAAAGAT-AAGAAACAGGACTGAGGACGCAAACAAAACAAACAAAAACAACTAACGGAAGACTGGAAAT-GCAGGCAAAAC--TGAGTCAGAGAT-------------------AAGG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6314323 126 + 10418462 C---------AACTACATGGATATAAAGTTGAAAGACAAAGAAATTGGAGCAAA-ATTCAAATG----AAATAAATA-----AGCAAAAGC--AGAAAT-CCAGGTAGAACAATGGGTCTGAGACGGGGGCAAATGGGAGACGGAAGG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109710 111 - 243199373 cacactataTCA--GCATA------AAGTCGAGTGATAAACAAATGGAAGCAAA-GGGCAAATATAAAAAATATA-------ACCACAGGACTAGAAAT-CCAGGCAGAAAAATGGGTCAAAGAC--------------------AGG- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12047453 110 - 247518478 catactataTCA--GCATA------AAGTCG-GTGATAAACAAATGGAAGCAAA-GGGCAAATATAAAAAATAAA-------ACCACAGGACTAGAAAT-CCAGGCAGAAAAATGGGTCAAAGAC--------------------AGG- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12209781 111 - 131632457 CACACTATATCA--GCATA------AAGTCGAGTGATAAACAAATGGAAGCAAA-GGGCAAATATAAAAAACAAA-------ACCACAGGACTAGAAAT-CCAGGCAGAAAAATGGGTCAAAGAC--------------------AGG- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2832541 111 - 6458163 CACACTATATCA--GCATA------AAGTCAAGTGATAAACAAATGGAAGTAAA-GGGCAAATATAAAAAATAAA-------ACCACAGGACTAGAAAT-CCAGGCAGAAAAATGGGTCAAAGAC--------------------AGG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12803906 107 - 106825570 cacactataTTA--GCATA------AAGTCCAGTGAT----AAATGGAAGCAAA-GGGCAAATATAAAAAATAAA-------ACCACAGGACTAGGAAT-CCAGGCAGAAAAATGGGTCAAAGAC--------------------AGG- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11711759 111 - 158406734 CACACTGTATCA--GCATA------AAGTCAAATGATAAACAAATGGGAGCAAA-GAACAAATATAATAAATAAA-------ACCTCAGGACTTGAAAT-CCAGGCAGAACAACGGGTCAAAGAC--------------------AGA- i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 105335 107 - 111236 ---------tca--gcata------aagttgaaagatgaagaaatgggagcaaa-acacagataaaataaataaacaaa---gcaagagaaCTAGAAAT-CCAGGCAGGACAATGGGTCAAAGAC--------------------AGAG i vicPac1.scaffold_4435 I 10 I 1 s equCab2.chr6 66896077 107 - 84719076 ---------tca--gcaca------aaggtgaaacataaagaaatgggagtaat-gtacaaataaatgaaataagcaaa---accagagGGCTGGAAAT-CCAGGCAGGACAATGGGTCAAAGAC--------------------AAAG i equCab2.chr6 C 0 I 2966 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=22011.000000 s mm10.chr1_GL456221_random 65853 18 + 206961 TGGCTAGGGACGAGGGCC------ s rn5.chr9 29201162 18 - 121549591 TGGCCAGGGATGAGGGCC------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 6314449 18 + 10418462 TGCCTGCGGGACGGGGCT------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 12109821 15 - 243199373 GGGCT---GATGAGAGCC------ i hg19.chr2 C 0 I 1837 s panTro4.chr2B 12047563 15 - 247518478 GGGCT---GATGAGAGCC------ i panTro4.chr2B C 0 I 4440 s gorGor3.chr2B 12209892 15 - 131632457 GGGCT---GATGAGAGCC------ i gorGor3.chr2B C 0 I 3415 s nomLeu2.GL397366 2832652 15 - 6458163 GGGCT---GATGAGAGCC------ i nomLeu2.GL397366 C 0 I 4247 s rheMac3.chr12 12804013 15 - 106825570 GGGCT---GATGAGAGCC------ i rheMac3.chr12 C 0 I 3999 s calJac3.chr6 11711870 15 - 158406734 GGGCT---AATGGGAGCC------ i calJac3.chr6 C 0 I 6 s vicPac1.scaffold_4435 105443 18 - 111236 ------TGAATGGGAGCCAGGGTA i vicPac1.scaffold_4435 I 1 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1010.000000 s mm10.chr1_GL456221_random 65871 2 + 206961 TG s rn5.chr9 29201180 2 - 121549591 TG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6314467 2 + 10418462 TG i speTri2.JH393335 C 0 I 2205 s calJac3.chr6 11711891 2 - 158406734 TG i calJac3.chr6 I 6 C 0 s vicPac1.scaffold_4435 105461 2 - 111236 TC i vicPac1.scaffold_4435 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12109836 1837 - 243199373 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=691.000000 s mm10.chr1_GL456221_random 65873 12 + 206961 TCCAGGGCTCCA s rn5.chr9 29201182 12 - 121549591 TGCAGGGCTCCA i rn5.chr9 C 0 C 0 s calJac3.chr6 11711893 12 - 158406734 GGTAGAACCCAG i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 105463 11 - 111236 TGTAGAGTCCA- i vicPac1.scaffold_4435 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12109836 1837 - 243199373 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-1506.000000 s mm10.chr1_GL456221_random 65885 5 + 206961 -GGCT-----C s rn5.chr9 29201194 5 - 121549591 -GGCT-----C i rn5.chr9 C 0 C 0 s hg19.chr2 12111673 7 - 243199373 -ggctag---c i hg19.chr2 I 1837 C 0 s calJac3.chr6 11711905 10 - 158406734 -GGCCAGTGAC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 105474 5 - 111236 GGGTC------ i vicPac1.scaffold_4435 C 0 I 2030 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3812.000000 s mm10.chr1_GL456221_random 65890 16 + 206961 AGACCTCTGCTGAAGA s rn5.chr9 29201199 16 - 121549591 AGACCTCTGCTAAAGA i rn5.chr9 C 0 C 0 s hg19.chr2 12111680 14 - 243199373 ataCC--TGCtaaaga i hg19.chr2 C 0 C 0 s calJac3.chr6 11711915 16 - 158406734 AGAGCAGTGGTGAAGA i calJac3.chr6 C 0 I 3059 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=20781.000000 s mm10.chr1_GL456221_random 65906 227 + 206961 GGTACAAATTACTGACCTGCAGGAACAG------GTCCCAAGAGTACAGGGAT---GCAAACAaagccatacaccaaaaaaaagtacactttatgtcttcatttata--------------tggcatttctgcgccggtcaaacttagctgt-gtaaccgata----atctgtggtt-ctctggggctggaatctgagagggggttttctgccaagaacaaggggattttAGGAGGGCAGAGGACTTGGCCTGTGT s rn5.chr9 29201215 215 - 121549591 GGAACAAATTACTT-CCTGCAGCAACAG------GTCCCAAGAGTACAGGGAT---GCAAATGAAACCACATACCAAAAAAGGTCA---------TCTTCATTTATA---------------GACATCTCCACCCCGGCCAGACTTAGCTGT-GTAACCACCA----ATCCATGGTTCCCCTAGGGCTGGAATCTGGGAAGGGGTTTTCTGCCAAGA--AAGGGGATTTTAGGGGGGCAGAGGACTTGGCTTGTGT i rn5.chr9 C 0 C 0 s hg19.chr2 12111694 253 - 243199373 agaataaattactgacccacaacaacagagatgaatctcaaaagcatgatgatgaggaaaagaaagccatacaccaaaaatg--cattccatgtgccttcattgataaaaaaaaaaaaaaaaaaaactttaatacacacgaaactaatctgtggtgatagaaagcagatcagtggtt-gcctggtgctggccttaaggaggggattgtttgcaaaggtcacagggaactttctagggtaacagaaatggtctgtat i hg19.chr2 C 0 I 293 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4893.000000 s mm10.chr1_GL456221_random 66133 36 + 206961 GATCACTGTGGCATGATTATATTTGGTAAAGTTCAC s rn5.chr9 29201430 36 - 121549591 GATCACTGTGGCATGATAATATGTGGTAAAGTTCAC i rn5.chr9 C 0 C 0 s hg19.chr2 12112240 34 - 243199373 gactggtgtag--taactacatttggtaaaatgtac i hg19.chr2 I 293 I 83 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2008.000000 s mm10.chr1_GL456221_random 66169 30 + 206961 CAAAATCATAACTTTAGGTAAATGCATCTT s rn5.chr9 29201466 30 - 121549591 CAAAATCATCACTTTAAATGAAGGCATCTT i rn5.chr9 C 0 I 7 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112274 83 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=0.000000 s mm10.chr1_GL456221_random 66199 577 + 206961 Ttgaaagacccccgaagggagaccctcacacagacactcaagtcccgggacagccgcgtacccaagaagacactgagaccatacataaaatgtagaaggcaagatttaataaggcagcaacatgaaagcacacagaccagagctctggggtcgaaataaagcagaaacatgaaagcacacagagctctggggtcgaaactcatacaccttagcacagggtagaggagtctcgaccgtcagccaaaatttttcacaggcttatatagtaaaactcaaagggggagaactgggcaggaaaagtacaagtttacatcactagggagttctgccaaaggaatctacgtaactaaggagtcatgtcctatcatttggcaatgtacctggttcattttgaggttgtttcaggaggcctttatctcaaaaatgttcttggaacagttttttcgaactttagggtgaggagttttggggtgaaaagtttaggagtgttccgagaacaacctctagatgggagggggtgggctccgaggtaaaaagttcatgttcttacaagaggccagtaatttttcattcttca e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112274 83 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29201496 7 - 121549591 I a score=1828.000000 s mm10.chr1_GL456221_random 66776 45 + 206961 CTTTAAAACTGTGTT--AAATGTATAAGTCTAATGAGCTCTCACGTG s rn5.chr9 29201503 47 - 121549591 TAATAAAACCGTGCTAAAAATGGGTAATTCTAATAGGCTCTCATTTG i rn5.chr9 I 7 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112274 83 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=6206.000000 s mm10.chr1_GL456221_random 66821 43 + 206961 GTGTGAAATA----CCAGGTGAGGTTTTTACCATCATTACTGTAGTC s rn5.chr9 29201550 46 - 121549591 GTGGGAATTACCAGCCAGGTGAGG-TTTTACCATCATTACCGTGTTC i rn5.chr9 C 0 C 0 s hg19.chr2 12112357 42 - 243199373 ATGTGAATTA----ACAGGTGACG-TTTTCCCATTATTACCATGTTC i hg19.chr2 I 83 I 818 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=12006.000000 s mm10.chr1_GL456221_random 66864 167 + 206961 CTAGTATGTGTGACTCCAAATGAAATCTTTGCCCTTATTCATATCTGTCTGATGTAATAAATTTTCTTGCTTTAGAGGTTTCTCAAGGGTAGGGTAATTTTCTGACACATAAGCATGCTTGTGATTCTTGTGCAGACTcacacacacacacacacacacacacacac s rn5.chr9 29201596 166 - 121549591 TCAGTATGTGCGGCTCCCAATAAAACCTTTGCCCTTATTCACATCTGTCTGATGTAAGAGTTTTTCCTGCTTTAAAGGTTTCTCGAGGGT-GGGTAATTTTCTGGCTCATAAGCATACTTGTGATTCTTGTGCAGacagacatacagacacacacacacacacacac i rn5.chr9 C 0 I 24 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2349.000000 s mm10.chr1_GL456221_random 67031 52 + 206961 aA-GCATTAA--------------------TGCACACTCAGTCCCCATCCCTGAGACACTCTGGGCCAAGCCT s rn5.chr9 29201786 73 - 121549591 acTGTATTAACCAGACTTGCCTTGTTTCCTTCCTCCCTCAGTCCCCATCCCTGAGACACTCTGCGCCAAGCCT i rn5.chr9 I 24 T 97 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=0.000000 s mm10.chr1_GL456221_random 67083 2 + 206961 CT e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29201859 97 - 121549591 T a score=8967.000000 s mm10.chr1_GL456221_random 67085 160 + 206961 acacacacacacacacacacacacacacacacacacacacacaca-------------cacTCAGTCCCCATCCCTGGGACACTCTGGGCCAAGCCTACTGTTCTAACTGTACTTGGCTGGAAATTCTACCGTTGG----TGTCTCCATAGGAAGTACAGAGAAGCTCAGTCATGTG s rn5.chr9 29201762 175 - 121549591 acacacacacacacacacacacacacTGTATTAACCAGACTTGCCTTGTTTCCTTCCTCCCTCAGTCCCCATCCCTGAGACACTCTGCGCCAAGCCTACTGCTCTGACTGTACTTGACTGCAAATTCTACCATTGGTATATGTCCCCATAGGAAGTACAGAGA--CTCTGTCCTGTG i rn5.chr9 T 97 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=0.000000 s mm10.chr1_GL456221_random 67245 69 + 206961 TGGGtgtagtggctattcctggttgtcaacttgacaatatttggaatgaactacaatccggaattagaa e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_175677 885 851 - 3989 T e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29201937 0 - 121549591 C a score=246.000000 s mm10.chr1_GL456221_random 67314 6 + 206961 ggctca s tarSyr1.scaffold_28366 5163 6 - 22953 GGCTTC i tarSyr1.scaffold_28366 n 851 I 11 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29201937 0 - 121549591 C a score=0.000000 s mm10.chr1_GL456221_random 67320 11 + 206961 ccagtgaccct e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_28366 5169 11 - 22953 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29201937 0 - 121549591 C a score=76.000000 s mm10.chr1_GL456221_random 67331 12 + 206961 tatctggaggct s tarSyr1.scaffold_28366 5180 12 - 22953 TATCTTTTTTCT i tarSyr1.scaffold_28366 I 11 I 721 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29201937 0 - 121549591 C a score=0.000000 s mm10.chr1_GL456221_random 67343 393 + 206961 tggagatccttatctggatcttggtttgaagatcttgagccatagtggctatggattccagaagattgaatgtttaaggaacacaactttaatctgggcttcgcctttcatctgggattaaaggtgtggtggaacacacctttaatctgggttacaccttctgctggagacaatataaggacattggaagaagagagtctagctcttgctcttgctccttcgcctgcttgctgcgtgagactgagtaactgctagatccttggactttcattcacagctgcgactgaacaattgttgggaattgggctgcagactgtaagtcatcaataaattcctttactatctagagactgtccataagttctgtgactctagagaaccctgactaataca e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29201937 0 - 121549591 C a score=277.000000 s mm10.chr1_GL456221_random 67736 5 + 206961 GTGGG s rn5.chr9 29201937 5 - 121549591 GAGGG i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e hg19.chr2 12112399 818 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1698.000000 s mm10.chr1_GL456221_random 67741 34 + 206961 CTAGCCTTGGTTCAAA----TCTAAACTCCCAGAGGCC-------------------------- s rn5.chr9 29201942 34 - 121549591 CCAGCCTTGGTTCAAA----TCTAAAGCCCCAGAGGCT-------------------------- i rn5.chr9 C 0 C 0 s hg19.chr2 12113217 64 - 243199373 TTAGCCTTGGTTTCAAAGCTTCTTAAACTTTAGATCCATGTCTCCCATCTTTTATCTGAGGAGT i hg19.chr2 I 818 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12209907 3415 - 131632457 I e panTro4.chr2B 12047578 4440 - 247518478 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=41309.000000 s mm10.chr1_GL456221_random 67775 82 + 206961 TCGTGGGTATCCTGGGGGTGGGGAATTGGGATGTCTTGTGGATCAAATACATTTGGGAAATA-----TTAGACAGGGTTACATAGAA s rn5.chr9 29201976 69 - 121549591 TCATGGATGTCCTGGGGTGGGGG---TGGGGGGCCTCGTGGGTTAAATACACTTGGGAAATA---------------TTACTCAGAA i rn5.chr9 C 0 C 0 s hg19.chr2 12113281 76 - 243199373 TTGTGGATGTCCTGG-----------TAGGGGAACTTGTGGGTCAAATACATTTGAGAATTATTGATTTAATCAAAGTTACATAGAA i hg19.chr2 C 0 I 747 s panTro4.chr2B 12052018 76 - 247518478 TTGTGGATGTCCTGG-----------TAGGGGAACTTGTGGGTCAAATACATTTGAGAATTATTGATTTAATCAAAGTTACATAGAA i panTro4.chr2B I 4440 C 0 s gorGor3.chr2B 12213322 76 - 131632457 TTGTGGATGTTCTGG-----------TAGGGGAACTTGTGGGTCAAATACATTTGAGAATTATTGATTTAATCAAAGTTACATAGAA i gorGor3.chr2B I 3415 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2276.000000 s mm10.chr1_GL456221_random 67857 7 + 206961 CTCTTCT s rn5.chr9 29202045 7 - 121549591 CACTTCT i rn5.chr9 C 0 C 0 s panTro4.chr2B 12052094 7 - 247518478 ttctttt i panTro4.chr2B C 0 I 810 s gorGor3.chr2B 12213398 7 - 131632457 ttctttt i gorGor3.chr2B C 0 I 1313 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e hg19.chr2 12113357 747 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=307.000000 s mm10.chr1_GL456221_random 67864 42 + 206961 CAGTTGAACACACTCAGAGACCCTAGATCAGACTCATTCGAG s rn5.chr9 29202052 23 - 121549591 CAATTGAAGACTT-------------------CTCATTAGAG i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12213405 1313 - 131632457 I e panTro4.chr2B 12052101 810 - 247518478 I e hg19.chr2 12113357 747 - 243199373 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2705.000000 s mm10.chr1_GL456221_random 67906 15 + 206961 AGTCACTTGGTTGCC s rn5.chr9 29202075 15 - 121549591 AGTCACTTGGTTGCC i rn5.chr9 C 0 C 0 s hg19.chr2 12114104 15 - 243199373 AGCCATTTTTCTGCC i hg19.chr2 I 747 I 43 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e nomLeu2.GL397366 2832667 4247 - 6458163 I e gorGor3.chr2B 12213405 1313 - 131632457 I e panTro4.chr2B 12052101 810 - 247518478 I e calJac3.chr6 11711931 3059 - 158406734 I e vicPac1.scaffold_4435 105479 2030 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1844.000000 s mm10.chr1_GL456221_random 67921 5 + 206961 TTTTG s rn5.chr9 29202090 5 - 121549591 TTTTG i rn5.chr9 C 0 C 0 s hg19.chr2 12114162 5 - 243199373 TTCCC i hg19.chr2 I 43 C 0 s nomLeu2.GL397366 2836914 5 - 6458163 TTCTC i nomLeu2.GL397366 I 4247 C 0 s vicPac1.scaffold_4435 107509 5 - 111236 TTTCC i vicPac1.scaffold_4435 I 2030 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12804028 3999 - 106825570 I e equCab2.chr6 66896184 2966 - 84719076 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e gorGor3.chr2B 12213405 1313 - 131632457 I e panTro4.chr2B 12052101 810 - 247518478 I e calJac3.chr6 11711931 3059 - 158406734 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3276.000000 s mm10.chr1_GL456221_random 67926 1 + 206961 T s rn5.chr9 29202095 1 - 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 12114167 1 - 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12052911 1 - 247518478 T i panTro4.chr2B I 810 C 0 s gorGor3.chr2B 12214718 1 - 131632457 T i gorGor3.chr2B I 1313 C 0 s nomLeu2.GL397366 2836919 1 - 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808027 1 - 106825570 T i rheMac3.chr12 I 3999 C 0 s vicPac1.scaffold_4435 107514 1 - 111236 T i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66899150 1 - 84719076 T i equCab2.chr6 I 2966 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6314469 2205 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e calJac3.chr6 11711931 3059 - 158406734 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=132292.000000 s mm10.chr1_GL456221_random 67927 60 + 206961 TTTATTT-CAATTTTCTCACATA-----GTGATCCTGACAAATTCTAGACATTTCAAAGATGCCAG------- s rn5.chr9 29202096 59 - 121549591 TTTACTT-CAATTTTCTCACATA-----CTGATCCTAATGAATTCTAGACATTTCAAA-ATGCTAG------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316674 66 + 10418462 TTTATTTGCAATTTTCTCACATCATCGTCTTATCCTGATAAACTCTAGGCATCTCTGGCACATGTT------- i speTri2.JH393335 I 2205 C 0 s hg19.chr2 12114168 65 - 243199373 TTCATTT-CAATTTCTTCCTGTAATAATCTTATCCTGACAAGTTCTAGGCATTTCTGGCACATTCT------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12052912 65 - 247518478 TTCATTT-CAATTTCTTCATGTAATAATCTTATCCTGACAAGTTCTAGGCATTTCTGGCACATTCT------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12214719 65 - 131632457 TTCATTT-CAATTTCTTCATGTAATAATCTTATCCTGACAAGTTCTAGGCATTTCTGGCACATTCT------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2836920 65 - 6458163 TTCATTT-CAATTTCTTCACGTAATAATCTTATCCTGACAAATTCTAGGCATTTCTGGCACATTCT------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808028 62 - 106825570 TACATTT-CAATTTCTT---GTAATAATCTTATCCTGACAAATTCTAGGCATTTCTGGCACATTCT------- i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 107515 71 - 111236 TTCATTT-CAGTTTTCTTA-GTAATCATTTTATCCTGACAAAGGATAGGCATTTCGGAGTCACTTTACCTCCC i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66899151 72 - 84719076 TTTATTT-CAATTTGCTTAGGTAATAATTTTATCCTGACAAATTAGAGGCATTGCTGAGTCGCCTCACCTCCA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e calJac3.chr6 11711931 3059 - 158406734 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=142000.000000 s mm10.chr1_GL456221_random 67987 85 + 206961 CTCTGGTTGTTGT----TGT-----------------------------------------------------TGTTGTT--AATTTAATAAC------------TTCTAGCAATTTTTTTCAGG---ATAACCTTCAC------CCCATTGCAGTTTGAGAACA s rn5.chr9 29202155 138 - 121549591 CTCTGgttgttgt----tgttttgttattgttgttgttgttgttactgctgctgctgctgctgctgctgctgctgctATT--AATTTAATGGT------------TTCTAGCAAACTTCTTCAGG---GTAACCTTCAC------CCCAATCCAGCTTGAAAACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316740 56 + 10418462 CCTTAGCTGTTGG----TGT-----------------------------------------------------GGT--------TTTGACGGT------------GTCTAGTGAATTCATTCAG--------------------------------TTTAGAACA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12114233 101 - 243199373 CTTTGTTTTTTTG----TGT------------------------------------------------------GTTGTTAGAGTTTGATAACACACTGgataaattccagtgaattcattcagttatgtaaacatcac------cacaatccagtttgagaaca i hg19.chr2 C 0 I 1 s panTro4.chr2B 12052977 97 - 247518478 C----TTTTTTTG----TGT------------------------------------------------------GTTGTTAGAGTTTGATAACACACTGgataaattccagtgaatttattcagttatgtaaacatcac------cacaatccaatttgagaaca i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12214784 97 - 131632457 C----TTTTTTTG----TGT------------------------------------------------------GTTGTTAGAGTTTGATAACACACTGGACAAATTCCAGTGAATTTATTCagttatgtaaacgtcac------cacaatccaatttgagaaca i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2836985 101 - 6458163 CTTTGTTTTTTTG----TGT------------------------------------------------------GTTGTTAGAGTTTGATAACACACTGgataaattccagtgaatttattcagttacgtaaacatcac------cacaatccaatttgagaaca i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12808090 96 - 106825570 CT---TTTTTGTG----TGT------------------------------------------------------GCTGTT--AGTTTGATAACACACTGGATAAATTCcactgaatttattcagttacgtaaacatcac------cacaatccaatttgagaaca i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11714990 87 - 158406734 --CCTTGTTTTTT----TGT------------------------------------------------------GTTGTTGAagtttgataat------------ttccagcaaatttattcagttatgtaaacatcac------cacactctaatttgagaaca i calJac3.chr6 I 3059 I 1 s vicPac1.scaffold_4435 107586 83 - 111236 ------TTCTGTT----TGT------------------------------------------------------TTTTT--Aagtttgacgat------------ttctagtaaatttattcagctgtgtaatcatcaccattaccacaatcaggat----aaca i vicPac1.scaffold_4435 C 0 I 3 s equCab2.chr6 66899223 93 - 84719076 ------CTTTGGTTTcctgt------------------------------------------------------ttttttaaagtttgatgat------------ttctacttaatttattcagttatgtaaccatcaccatcaacacaatccagtttgggaaca i equCab2.chr6 C 0 I 7 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9051921 5552 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=6391.000000 s mm10.chr1_GL456221_random 68072 2 + 206961 CT s rn5.chr9 29202293 2 - 121549591 TT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316796 2 + 10418462 TT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12114335 2 - 243199373 tt i hg19.chr2 I 1 C 0 s panTro4.chr2B 12053075 2 - 247518478 tt i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12214882 2 - 131632457 tt i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2837087 2 - 6458163 tt i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12808187 2 - 106825570 tt i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11715078 2 - 158406734 tt i calJac3.chr6 I 1 C 0 s vicPac1.scaffold_4435 107672 2 - 111236 tt i vicPac1.scaffold_4435 I 3 I 7 s felCat5.chrC1 9057473 2 - 221441202 ct i felCat5.chrC1 I 5552 I 22 s equCab2.chr6 66899323 2 - 84719076 ca i equCab2.chr6 I 7 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=51995.000000 s mm10.chr1_GL456221_random 68074 22 + 206961 TCCT--------AAAGGTTGCAATGAG-----ACC s rn5.chr9 29202295 30 - 121549591 TCATTCCTCCAAAAAGGTTACAATGCG-----GCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316798 35 + 10418462 TCATCACCCCAGAAAGTGCAGAACGAGGGGGAGCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12114337 35 - 243199373 tcatcaacctaaaatgtACAGAATGAGGACAAGTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053077 35 - 247518478 tcatcaacctaaaatgtACAGAATGAGGACAAGTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12214884 35 - 131632457 tcatcaacctaaaaTGTACAGAATGAGGACAAGTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837089 35 - 6458163 tcatcaacctaaaatgtACAGAATGAGGATAAGTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808189 35 - 106825570 tcatcaacctaaaaTGTACAGAATGAGGACAAGTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715080 35 - 158406734 tcatcaccctaaaaTGTACAGAATAAGGGTAAGTC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 107681 22 - 111236 ------ccccaaaaagtATAGGAGAAGT------- i vicPac1.scaffold_4435 I 7 C 0 s equCab2.chr6 66899325 22 - 84719076 ------ccccaaagggtATAAAAGCAGG------- i equCab2.chr6 C 0 I 7 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057475 22 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4664.000000 s mm10.chr1_GL456221_random 68096 1 + 206961 A s rn5.chr9 29202325 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316833 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12114372 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053112 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12214919 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837124 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808224 1 - 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715115 1 - 158406734 A i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 107703 1 - 111236 G i vicPac1.scaffold_4435 C 0 C 0 s felCat5.chrC1 9057497 1 - 221441202 A i felCat5.chrC1 I 22 I 1804 s equCab2.chr6 66899354 1 - 84719076 A i equCab2.chr6 I 7 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-2563.000000 s mm10.chr1_GL456221_random 68097 1 + 206961 -T s rn5.chr9 29202326 1 - 121549591 -C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316834 1 + 10418462 -T i speTri2.JH393335 C 0 C 0 s hg19.chr2 12114373 1 - 243199373 -T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053113 1 - 247518478 -T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12214920 1 - 131632457 -T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837125 1 - 6458163 -C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808225 1 - 106825570 -T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715116 1 - 158406734 -T i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 107704 1 - 111236 A- i vicPac1.scaffold_4435 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907088 400 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e equCab2.chr6 66899355 0 - 84719076 C e tarSyr1.scaffold_28366 5192 721 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1365.000000 s mm10.chr1_GL456221_random 68098 1 + 206961 T s rn5.chr9 29202327 1 - 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316835 1 + 10418462 T i speTri2.JH393335 C 0 I 6 s vicPac1.scaffold_4435 107705 1 - 111236 T i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66899355 1 - 84719076 T i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4907488 1 - 30916457 T i myoLuc2.GL429770 I 400 I 122 e pteVam1.scaffold_12135 12615 2 - 44403 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12808226 0 - 106825570 C e tarSyr1.scaffold_28366 5192 721 - 22953 I e nomLeu2.GL397366 2837126 0 - 6458163 C e gorGor3.chr2B 12214921 0 - 131632457 C e panTro4.chr2B 12053114 0 - 247518478 C e hg19.chr2 12114374 0 - 243199373 C e calJac3.chr6 11715117 0 - 158406734 C e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=42184.000000 s mm10.chr1_GL456221_random 68099 27 + 206961 GGGGGAA--TAGATCCCCAGGTTAGGAAG- s rn5.chr9 29202328 27 - 121549591 AGAGGAA--CAGAACCCCAGGTTGGGAAG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316842 29 + 10418462 GGGGAAATGCAAGTGCGTAGCCAAGGGGA- i speTri2.JH393335 I 6 C 0 s hg19.chr2 12114374 24 - 243199373 GGGAAAA--TAGATGT---GGTTAGGGAA- i hg19.chr2 C 0 I 6 s panTro4.chr2B 12053114 24 - 247518478 GGGAAAA--TAGATGT---GGTTAGGGAA- i panTro4.chr2B C 0 I 6 s gorGor3.chr2B 12214921 24 - 131632457 GGGAAAA--TAGATGT---GGTTAGGGAA- i gorGor3.chr2B C 0 I 6 s nomLeu2.GL397366 2837126 24 - 6458163 GCGAAAA--CAGACGT---GGGTAGGGAA- i nomLeu2.GL397366 C 0 I 6 s rheMac3.chr12 12808226 24 - 106825570 GGGAAAA--TAGATGT---GGGTAGGGAA- i rheMac3.chr12 C 0 I 6 s calJac3.chr6 11715117 24 - 158406734 GGGAAAA--TCACTGC---GGGTAGGGAA- i calJac3.chr6 C 0 I 6 s vicPac1.scaffold_4435 107706 25 - 111236 AGAGAAA--TAGAGGT---GGGTAAGGATG i vicPac1.scaffold_4435 C 0 I 5 s equCab2.chr6 66899356 25 - 84719076 GGGGAAA--TAGAGAT---GGGTAGGGAAG i equCab2.chr6 C 0 I 4 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907489 122 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-409.000000 s mm10.chr1_GL456221_random 68126 1 + 206961 A s rn5.chr9 29202355 1 - 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316871 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s equCab2.chr6 66899385 1 - 84719076 C i equCab2.chr6 I 4 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907489 122 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12808250 6 - 106825570 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e nomLeu2.GL397366 2837150 6 - 6458163 I e gorGor3.chr2B 12214945 6 - 131632457 I e panTro4.chr2B 12053138 6 - 247518478 I e hg19.chr2 12114398 6 - 243199373 I e calJac3.chr6 11715141 6 - 158406734 I e vicPac1.scaffold_4435 107731 5 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=167798.000000 s mm10.chr1_GL456221_random 68127 89 + 206961 GGACAGTGGACACACCCTTCCCATGCTCTCCAGTGTTAATCCTTTG--------CCTCCC--TGCCTCTCACTCCACTCCAGGCAGATCTGGATTCCCA s rn5.chr9 29202356 88 - 121549591 CGACAGTGGACACCCCCTT-CCGTGTTTTCCAATGCTGGTCCTTAG--------CCTCCC--TGCCTGTCACTCCACTCCGGGCAGATCTGGATTCCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316872 81 + 10418462 AGGCGGTGGATGCCCGGTTCCCTGGC---CCAGGTCTGGTCCCCTGGG---CCTCCTCCC-GGGTCTCCCACTTGGGGCCGGG-AGA----------CA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12114404 93 - 243199373 GGACGCTGAGTTCCCAGTTCCTATTGCCGCTGGGGCTGTACCCTTATGCCTCCTCCTCCC-ATACCTCCCTCT-----CTGGGCTGATCCCAACTGGCA i hg19.chr2 I 6 C 0 s panTro4.chr2B 12053144 93 - 247518478 GGACGCTGAGTTCCCAGTTCCTATTGCCGCTGGGGCTGTACCCTTATGTCTCCTCCTCCC-ATACCTCTCTCT-----CTGGGCTGATCCCAACTGGCA i panTro4.chr2B I 6 C 0 s gorGor3.chr2B 12214951 93 - 131632457 GGACGCTGAGTTCCCAGTTCCTATTGCCGCTGGGGCTGTACCCTTATGCCTCCTCCTCCC-ATACCTCTCTCT-----CTGGGCTGATCCCAACTGGCA i gorGor3.chr2B I 6 C 0 s nomLeu2.GL397366 2837156 88 - 6458163 GGACGCTGAGTTCCCAGTTCCCACTGCTGCTGGGGCTGGACCCCTATGCCTCCTCCTCCC-ATA-----CTCT-----CTGTGCTGATCCCAACTGGCA i nomLeu2.GL397366 I 6 C 0 s rheMac3.chr12 12808256 93 - 106825570 GGACGCTGAGTTCCCCGTTCCCACTGCCGCTGGGGCTGGACCCCTATGCCTCCTCCTCCC-ATACGCCTCTCT-----CTGGGCTGATCCCAACTGGCA i rheMac3.chr12 I 6 C 0 s calJac3.chr6 11715147 93 - 158406734 GGACGGTGGGTTCCCAGTTCCCACTGCTGCAGGGGCTGGACCCCAATGCCCCCTCCTCCC-ATACCCCGCTCT-----CTGGGCCGATCCCAACTGGCA i calJac3.chr6 I 6 C 0 s vicPac1.scaffold_4435 107736 94 - 111236 AGACGGTGGATTCCCAGCTCCCGCGGACCCTGGGGCTAGACCCCTGTGCCCCTTCCCCTCTGAACCCACCTCC-----CCAGGCTGATCCGGATGAGCA i vicPac1.scaffold_4435 I 5 C 0 s equCab2.chr6 66899386 93 - 84719076 AGATGGTGGATTCCCAGACTCCCAGGACCCTGGGGCTGGACCCCTATGCCTCCTCCTCTCTGTACACCCCT-C-----CCAGGCTGGTCCTGATTGGCA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907489 122 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-18995.000000 s mm10.chr1_GL456221_random 68216 7 + 206961 GCA-AATG--- s rn5.chr9 29202444 6 - 121549591 GT--AATG--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316953 6 + 10418462 GC--AGCT--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12114497 8 - 243199373 ACACGCCC--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053237 8 - 247518478 ACACGCCC--- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215044 8 - 131632457 ACACGCCC--- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837244 8 - 6458163 ACACGCCC--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808349 8 - 106825570 GCACGCCC--- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715240 8 - 158406734 ACATGCCC--- i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 107830 7 - 111236 ----GCAGCCC i vicPac1.scaffold_4435 C 0 I 7 s equCab2.chr6 66899479 5 - 84719076 ----GTACC-- i equCab2.chr6 C 0 I 33 s myoLuc2.GL429770 4907611 5 - 30916457 ----GAACA-- i myoLuc2.GL429770 I 122 I 161 e pteVam1.scaffold_12135 12615 2 - 44403 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=108064.000000 s mm10.chr1_GL456221_random 68223 70 + 206961 CCCCTGAAACCCATAATGCTAACCACGCTGGGGAACCGCACAAGGC-------AGGGGTGGA-------GGAGTGGAGGGCAGA s rn5.chr9 29202450 84 - 121549591 CCACTGAAACCCAGAATTCTAACCATGCTGGGAAGCCTCACAAGGCAGGAGATAGGGGTGGAGGGGTTGGGGGTGGAGGGCGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6316959 46 + 10418462 CCTCCCCACCCC---------------CTGGGGG--CGTCCGAGCC-------GGAGGTGGG------------GGAGGCTG-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12114505 76 - 243199373 TCCCCCAAACCCCAACTGCCAAGACGTCCTGGGAGCCTCACAAGTGCCCATGAGGAGGTGGA----GAGAGGCTGCAGGC---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053245 76 - 247518478 TCCCCCAAACCCCAACTGCCAAGACGTCCTGGGAGCCTCACAAGTGCCCATGAGGAGGTGGA----GAGAGGCTGCAGGC---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215052 76 - 131632457 TCCCCCAAACCCCAACTGCCAAGACGTCCTGGGAGCCTCACAAGTGCCCATGAGGAGGTGGA----GAGAGGCTGCAGGC---- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837252 76 - 6458163 TCCCCCAAACCCCAACTGCCAAGACGTCCTGGGAGCCTTACAAGTGCCCATGAGGAGGTGGA----GAGAGGCTGCAGGC---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808357 76 - 106825570 GCCCCCAAACCCCAACTGCCGAGACGTCCCGGGAGCCTCACAAGCGCCCATGAGGAGGTGGA----GAGAGGCTGCAGGC---- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715248 76 - 158406734 TCCCCCAAACCCCAACTGCCAAGACACCCTGAGAGCCTCACAAGTGTCCCTGAGAAGGTGGA----GAGAGGCTGCAGGC---- i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 107844 51 - 111236 ACCCCCAAAGCCCT-----------------GGGGCCTCACAAGCGTCC----GAAGGTGGA----GGGAGGCTGC-------- i vicPac1.scaffold_4435 I 7 C 0 s equCab2.chr6 66899517 51 - 84719076 TCCCTGAAACCCCT-----------------GGGATCTCACAAGCGTCC----AGAGGGGGA----GAGAGGCAGC-------- i equCab2.chr6 I 33 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907616 161 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5192 721 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-3165.000000 s mm10.chr1_GL456221_random 68293 2 + 206961 AT s rn5.chr9 29202534 2 - 121549591 AT i rn5.chr9 C 0 C 0 s hg19.chr2 12114581 2 - 243199373 AC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053321 2 - 247518478 AC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215128 2 - 131632457 AC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837328 2 - 6458163 AC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808433 2 - 106825570 AC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715324 2 - 158406734 AC i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_28366 5913 2 - 22953 GC i tarSyr1.scaffold_28366 I 721 I 782 s vicPac1.scaffold_4435 107895 1 - 111236 G- i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66899568 1 - 84719076 A- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907616 161 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317005 0 + 10418462 C e turTru2.JH490333 25509 3678 + 53618 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=6953.000000 s mm10.chr1_GL456221_random 68295 11 + 206961 TGGCATGGCCA- s rn5.chr9 29202536 10 - 121549591 TGGCGTGTCC-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317005 10 + 10418462 CGGCGCGGCC-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12114583 10 - 243199373 CGACCTGCCT-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053323 10 - 247518478 CGACCTGCCT-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215130 10 - 131632457 CGACCTGCCT-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837330 10 - 6458163 CGACCTGCCT-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808435 10 - 106825570 TGACCTGCCT-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715326 10 - 158406734 TGACCTGCCT-- i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 107896 10 - 111236 -GGCGCGGCA-A i vicPac1.scaffold_4435 C 0 I 8 s equCab2.chr6 66899569 10 - 84719076 -AACACTCCA-G i equCab2.chr6 C 0 I 8 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907616 161 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=0.000000 s mm10.chr1_GL456221_random 68306 1 + 206961 G e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907616 161 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317015 0 + 10418462 C e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12808445 0 - 106825570 C e equCab2.chr6 66899579 8 - 84719076 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e nomLeu2.GL397366 2837340 0 - 6458163 C e gorGor3.chr2B 12215140 0 - 131632457 C e panTro4.chr2B 12053333 0 - 247518478 C e hg19.chr2 12114593 0 - 243199373 C e calJac3.chr6 11715336 0 - 158406734 C e vicPac1.scaffold_4435 107906 8 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29202546 0 - 121549591 C a score=136374.000000 s mm10.chr1_GL456221_random 68307 47 + 206961 CTGGCTTCCTGCTCAGTGTGCTGAGATCACTTTCCTTTTTCTTTTCT s rn5.chr9 29202546 44 - 121549591 --GGCTTCCTGTTCTGTGTGCTGAGATCACTTTCG-TTTTCTTTTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317015 45 + 10418462 CCCGCTTCCTGCCTGATGCGCT--CGTCACTTTCACTTTCCTTTCCT i speTri2.JH393335 C 0 I 707 s hg19.chr2 12114593 47 - 243199373 TCAGCTTCCGGCTTGGCAAACTCCGAAAACTTTCACTTTTCTTTTCT i hg19.chr2 C 0 I 1 s panTro4.chr2B 12053333 47 - 247518478 TCAGCTTCCGGCTTGGCAAACTCCGAAAACTTTCACTTTTCTTTTCT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12215140 47 - 131632457 TCAGCTTCCGGCTTGGCAAACTCCGAAAACTTTCACTTTTCTTTTCT i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2837340 47 - 6458163 TCAGCTTCCTGCTTGGCAAACTCCGAAAACTTTCACTTTTCTTTTCT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12808445 47 - 106825570 TCAGCTTCCTGCTTGGCAAACTCCGAAAACTTTCACTTTTCTTTTCT i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11715336 47 - 158406734 TCAGCTTCCTGCTTGGCAAACTCCAAACAGTTTCACTTTTCTTTTCT i calJac3.chr6 C 0 I 1 s vicPac1.scaffold_4435 107914 45 - 111236 TCGGCT--CTGCGCGATCTGCTCCAAGTACTTTCACTTTCCTTTTCT i vicPac1.scaffold_4435 I 8 C 0 s equCab2.chr6 66899587 47 - 84719076 TCAGCTTCCTGCCCAACGTGCTCCAAATAGTTTCACTTTTCTTTTTT i equCab2.chr6 I 8 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907616 161 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=33078.000000 s mm10.chr1_GL456221_random 68354 27 + 206961 TGAAGCCTGACTCCCCGCGGGACTTCC s rn5.chr9 29202590 27 - 121549591 TGAAACTTGACTCCTCTCGGTGCTTCT i rn5.chr9 C 0 C 0 s hg19.chr2 12114641 27 - 243199373 GGAAGCCCGGCCCCTTACTGCGTTTGT i hg19.chr2 I 1 C 0 s panTro4.chr2B 12053381 27 - 247518478 GGAAGCCCGGCCCCTTACTGCGTTTGT i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12215188 27 - 131632457 GGAAGCCTGGCCCCTTACTGCGTTTGT i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2837388 27 - 6458163 GGAAGCCCGGCCCCTTACTGCGTTTGT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12808493 27 - 106825570 TGAAGCCCGGCCCCTTACTGCGTTTGT i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11715384 27 - 158406734 CGAAGACTGGCCCCGTACTGCGTGTAT i calJac3.chr6 I 1 C 0 s vicPac1.scaffold_4435 107959 22 - 111236 CAAAGCCTGGCCTCGCGCTGCC----- i vicPac1.scaffold_4435 C 0 I 4 s equCab2.chr6 66899634 17 - 84719076 CAGA----AGCCTCGC-CCACC----- i equCab2.chr6 C 0 I 12 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907616 161 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2656.000000 s mm10.chr1_GL456221_random 68381 2 + 206961 AA s rn5.chr9 29202617 2 - 121549591 AG i rn5.chr9 C 0 C 0 s hg19.chr2 12114668 2 - 243199373 CA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053408 2 - 247518478 CA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215215 2 - 131632457 CA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837415 2 - 6458163 CA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808520 2 - 106825570 CA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715411 2 - 158406734 CA i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 107985 2 - 111236 GA i vicPac1.scaffold_4435 I 4 C 0 s equCab2.chr6 66899663 1 - 84719076 -A i equCab2.chr6 I 12 C 0 s myoLuc2.GL429770 4907777 1 - 30916457 -A i myoLuc2.GL429770 I 161 I 17 e pteVam1.scaffold_12135 12615 2 - 44403 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-4339.000000 s mm10.chr1_GL456221_random 68383 7 + 206961 ---GGCAGCA s rn5.chr9 29202619 1 - 121549591 ---G------ i rn5.chr9 C 0 C 0 s hg19.chr2 12114670 1 - 243199373 ---A------ i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053410 1 - 247518478 ---A------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215217 1 - 131632457 ---A------ i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837417 1 - 6458163 ---A------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808522 1 - 106825570 ---A------ i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715413 1 - 158406734 ---A------ i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 107987 4 - 111236 GGCA------ i vicPac1.scaffold_4435 C 0 I 7 s equCab2.chr6 66899664 4 - 84719076 AGCA------ i equCab2.chr6 C 0 I 3 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907778 17 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-460.000000 s mm10.chr1_GL456221_random 68390 1 + 206961 -T s vicPac1.scaffold_4435 107998 1 - 111236 G- i vicPac1.scaffold_4435 I 7 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907778 17 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12808523 0 - 106825570 C e equCab2.chr6 66899668 3 - 84719076 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e nomLeu2.GL397366 2837418 0 - 6458163 C e gorGor3.chr2B 12215218 0 - 131632457 C e panTro4.chr2B 12053411 0 - 247518478 C e hg19.chr2 12114671 0 - 243199373 C e calJac3.chr6 11715414 0 - 158406734 C e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29202620 0 - 121549591 C a score=-3816.000000 s mm10.chr1_GL456221_random 68391 10 + 206961 AATTTCGGGT s rn5.chr9 29202620 9 - 121549591 -ACTTCGGGT i rn5.chr9 C 0 C 0 s hg19.chr2 12114671 3 - 243199373 -------AGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053411 3 - 247518478 -------AGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215218 3 - 131632457 -------AGC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837418 3 - 6458163 -------AGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808523 3 - 106825570 -------AGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715414 3 - 158406734 -------AGC i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 107999 9 - 111236 -ACTTCCTGT i vicPac1.scaffold_4435 C 0 I 1 s equCab2.chr6 66899671 9 - 84719076 -ACTTCCGGT i equCab2.chr6 I 3 I 1 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907778 17 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=7255.000000 s mm10.chr1_GL456221_random 68401 3 + 206961 CCA s rn5.chr9 29202629 3 - 121549591 CCA i rn5.chr9 C 0 C 0 s hg19.chr2 12114674 3 - 243199373 ACA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053414 3 - 247518478 ACA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215221 3 - 131632457 ACA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837421 3 - 6458163 ACA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808526 3 - 106825570 ACG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715417 3 - 158406734 ACA i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 108009 3 - 111236 TCA i vicPac1.scaffold_4435 I 1 I 16 s equCab2.chr6 66899681 3 - 84719076 TCA i equCab2.chr6 I 1 I 15 s myoLuc2.GL429770 4907795 3 - 30916457 TCA i myoLuc2.GL429770 I 17 I 4828 e pteVam1.scaffold_12135 12615 2 - 44403 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=190352.000000 s mm10.chr1_GL456221_random 68404 151 + 206961 GACTGGGCTGTCAGGCTTTTCCAGGAAGGAT---CCAGGAACCCCTTAACTAATCCAGGCAGTGA---------------------CCTGGGAGAACTCGGGAGAACCCGTGGCAGCCC----CCAGCATCCAGGTGCGTTCTGCTCTTGGGCTCTGCAACTAGATTCCTGATTCTTGG---------------------------- s rn5.chr9 29202632 150 - 121549591 GACTAGGCTGGCTGGCTTTTCCAGGCAGGAT---CCAGGAACCTCTTAATTAATCCTGG-AGTGA---------------------CCTGGGAGAACCTGGGAGATCCCCGTTGGCAAC----CCGGCATCCAGGTGCGTTCTGCTCTTGGGCTCTGCAGCTAGATTCCAGATTCTTGG---------------------------- i rn5.chr9 C 0 C 0 s hg19.chr2 12114677 147 - 243199373 GACT------TCCTGTTTTGCCTGCTAGCATCTCCCTGTAACTCTCCCAATCTT-GAGG-AGTGATCCCTGTCCCAGCC-------CCTGGAAAGGGGCAGGAACGAC-------AAAC----TCAAAGTCCAGGTGAGTT------TCTGTCTTTGCTGCTTTATTCTTCGCTCTTGG---------------------------- i hg19.chr2 C 0 I 3 s panTro4.chr2B 12053417 147 - 247518478 GACT------TCCTGTTTTGCCTGCTAGCATCTCCCTGTAACTCTCCCAATCTT-GAGG-AGTGATCCCTGTCCCAGCC-------CCCGGAAAGGGGCAGGAACGAC-------AAAC----TCAAAGTCCAGGTGAGTT------TCTGTCTTTGCTGCTTTATTCTTCGCTCTTGG---------------------------- i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 12215224 147 - 131632457 GACT------TCCTGTTTTGCCTGCTAGCATCTCCCTGTAAGTCTCCCAATCTT-GAGG-AGTGATCCCTGTCCCAGCC-------CCTGGAAAGGGGCAGGAACGAC-------AAAC----TCAAAGTCCAGGTGAGTT------TCTGTCTTTGCTGCTTTATTCTTCGCTCTTGG---------------------------- i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 2837424 148 - 6458163 GACT------TCCTGTTTTGCCTGCTGGCATCTCCCTGTAACTCTTCCAATCTTCCAGG-AGTGATCCCTGTCCCAGCC-------CCTGGAAAGGGGCAGGAACGAC-------AAAC----TCGAAGTCCAGGTGAGTT------TCTGTCTTTGCTGCTTTATTCTTCGCTCTTGG---------------------------- i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 12808529 148 - 106825570 GACT------TCCTGTTTTGCCTGCTACCATCTCCCTGTAACTCTCCCAATCTTCGAAG-AGTGATCCCCGGCCCAGCT-------CCTGGAAAGGGGCAGGAACGAC-------AAAC----TCAAAGTCCAGGTGAGTT------TCTGTGTTTGCTGCTTTATTCTTCGCCCTTGG---------------------------- i rheMac3.chr12 C 0 I 107 s calJac3.chr6 11715420 155 - 158406734 GACT------TCCTGTTTTGCCTGCTGGCATCTCCCCGTAAATCTCCCAGTCTTTCAGG-AGTGATCCCTGGCCCAGTCCCTGGAACCTGGAAAAGGGCAGGAACAAC-------AAGC----CCAGCGTCGAGGTGAGTT------TCTGTCTTTGCTGCTTTATTCTTCGCTCTTGG---------------------------- i calJac3.chr6 C 0 I 3 s vicPac1.scaffold_4435 108028 145 - 111236 ------------------TGCCCG------------------TCTCCCAGTTTTCCAGG-A------CCGAG-CCAGCCCCTGGG-CCTGGAAAGCGGCAGGAGAACA-------TGGCAGTCTCGGCGTCCAGGTGGGTT------TTCGTCTCGGCTGCTTGATTTAG---TTTTGGCGACT-GACTTTAATGGTTAATGCCCTG i vicPac1.scaffold_4435 I 16 C 0 s equCab2.chr6 66899699 150 - 84719076 ------------------TGCTAT------------------TCTCTCAGTCTTCCAGG-AGTGATCCCGGGCCCAGCCGCTGGA-CCTGGAAAGGGGCAAGAGCAGC-------TGGC--TAACAGCATCCAGGTGGGTT------TTTGGCTCAGCTGCTTTGTTCA----TTTTGGTAATTGGGCTTTCACAATTAATTTCCTG i equCab2.chr6 I 15 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=12367.000000 s mm10.chr1_GL456221_random 68555 11 + 206961 -GGTCAGCTTTT s rn5.chr9 29202782 11 - 121549591 -GGTCAGCTTTT i rn5.chr9 C 0 C 0 s hg19.chr2 12114827 11 - 243199373 -CTGCAGCTCTT i hg19.chr2 I 3 I 90 s panTro4.chr2B 12053567 11 - 247518478 -CTGCAGCTCTT i panTro4.chr2B I 3 I 90 s gorGor3.chr2B 12215374 11 - 131632457 -CTGCAGCTCTT i gorGor3.chr2B I 3 I 90 s nomLeu2.GL397366 2837575 11 - 6458163 -CTGCAGCTCTT i nomLeu2.GL397366 I 3 I 90 s calJac3.chr6 11715578 11 - 158406734 -CTACAGCTTTT i calJac3.chr6 I 3 C 0 s vicPac1.scaffold_4435 108173 9 - 111236 GCAGCAGCC--- i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66899849 9 - 84719076 GCAGCAGCT--- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12808677 107 - 106825570 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=392.000000 s mm10.chr1_GL456221_random 68566 2 + 206961 GT s rn5.chr9 29202793 2 - 121549591 AT i rn5.chr9 C 0 C 0 s calJac3.chr6 11715589 2 - 158406734 AT i calJac3.chr6 C 0 I 97 s vicPac1.scaffold_4435 108182 2 - 111236 GC i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66899858 2 - 84719076 GC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12808677 107 - 106825570 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e nomLeu2.GL397366 2837586 90 - 6458163 I e gorGor3.chr2B 12215385 90 - 131632457 I e panTro4.chr2B 12053578 90 - 247518478 I e hg19.chr2 12114838 90 - 243199373 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=10688.000000 s mm10.chr1_GL456221_random 68568 56 + 206961 -CTGCTGTACCCTA------GACTCCCCAGGTTCTCTCTTTGCTAAGTAATCTTGTCCAGAGA s rn5.chr9 29202795 56 - 121549591 -CTGCTGTACCCGA------GAGTCCCCAGGCTCTCTCTTTGTTAAGTAATCCTTTCCAGAGA i rn5.chr9 C 0 C 0 s vicPac1.scaffold_4435 108184 61 - 111236 ACGGTGGAACTCAG--GCTGAAACTGTGAGGCTCTCTCTTTGTAAAATAATGTTTTCCAAAGA i vicPac1.scaffold_4435 C 0 I 709 s equCab2.chr6 66899860 61 - 84719076 AGGGCGGAACTCAACTATTTAAA--GTTAGGCGCTCTCTTCACAAAATAGTGCTTTCTAAAGA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12808677 107 - 106825570 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e nomLeu2.GL397366 2837586 90 - 6458163 I e gorGor3.chr2B 12215385 90 - 131632457 I e panTro4.chr2B 12053578 90 - 247518478 I e hg19.chr2 12114838 90 - 243199373 I e calJac3.chr6 11715591 97 - 158406734 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-2592.000000 s mm10.chr1_GL456221_random 68624 39 + 206961 CTCGAGCATGGCTCCGGATCCTGGCTCGGACCCTGGAGT s rn5.chr9 29202851 14 - 121549591 CTC-------------------------GACCCTGGAGT i rn5.chr9 C 0 C 0 s equCab2.chr6 66899921 27 - 84719076 ----------GGTAGAGAGGGTAAGTGGGATCTAATG-- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e rheMac3.chr12 12808677 107 - 106825570 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e nomLeu2.GL397366 2837586 90 - 6458163 I e gorGor3.chr2B 12215385 90 - 131632457 I e panTro4.chr2B 12053578 90 - 247518478 I e hg19.chr2 12114838 90 - 243199373 I e calJac3.chr6 11715591 97 - 158406734 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=34760.000000 s mm10.chr1_GL456221_random 68663 28 + 206961 GGAGGTGGATAAGAGGGAGGAAGGGGAG s rn5.chr9 29202865 20 - 121549591 GGATGTGGATAAGAGGAAGG-------- i rn5.chr9 C 0 C 0 s hg19.chr2 12114928 28 - 243199373 GGAGACTGTTAAAAGGGGGCACATGGAG i hg19.chr2 I 90 C 0 s panTro4.chr2B 12053668 28 - 247518478 GGAGACTGTTAAAAGGGGGCACATGGAG i panTro4.chr2B I 90 C 0 s gorGor3.chr2B 12215475 28 - 131632457 GGAGACTGTTAAAAGGGGGCACATGGAG i gorGor3.chr2B I 90 C 0 s nomLeu2.GL397366 2837676 28 - 6458163 GGAGACTGTTAAAAGGGGGCACATGGAG i nomLeu2.GL397366 I 90 C 0 s rheMac3.chr12 12808784 28 - 106825570 GGAGACTGTTAAAAGGGGGCACATGGAG i rheMac3.chr12 I 107 C 0 s equCab2.chr6 66899948 26 - 84719076 GGAGCTTGTTAAAAAGAAGGACAGAC-- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e calJac3.chr6 11715591 97 - 158406734 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-3496.000000 s mm10.chr1_GL456221_random 68691 31 + 206961 GAAAGGGGAGGGCAGTGAG----GGTTTATACACA s rn5.chr9 29202885 28 - 121549591 --GAGGGGAGGGCAGTGA-----GGTCCATACACC i rn5.chr9 C 0 C 0 s hg19.chr2 12114956 12 - 243199373 -----------------------GGAACACTGACA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053696 12 - 247518478 -----------------------GGAACACTGACA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215503 12 - 131632457 -----------------------GGAACACTGATA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837704 12 - 6458163 -----------------------GGAACACTGATA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808812 12 - 106825570 -----------------------GGAACACTGACA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715688 31 - 158406734 ----GAAAAGGAGGGCCATGGAGGGAAAACAGACA i calJac3.chr6 I 97 C 0 s equCab2.chr6 66899974 26 - 84719076 ----GCAGGGGGGAAGCA-----GACACACAGCTC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_58312 5977 0 + 9524 C e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-234.000000 s mm10.chr1_GL456221_random 68722 2 + 206961 CG s rn5.chr9 29202913 2 - 121549591 CA i rn5.chr9 C 0 C 0 s hg19.chr2 12114968 2 - 243199373 CC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053708 2 - 247518478 CC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215515 2 - 131632457 CC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837716 2 - 6458163 CC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808824 2 - 106825570 CC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715719 2 - 158406734 AC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900000 2 - 84719076 AA i equCab2.chr6 C 0 C 0 s choHof1.scaffold_22666 13705 2 - 17749 CG i choHof1.scaffold_22666 n 0 I 361 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=19340.000000 s mm10.chr1_GL456221_random 68724 11 + 206961 --ACTCTTTTTCT s rn5.chr9 29202915 11 - 121549591 --ACTCTTTTTCT i rn5.chr9 C 0 C 0 s hg19.chr2 12114970 11 - 243199373 --TCTTTTTTTCG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053710 11 - 247518478 --TCTTTTTTTCG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215517 11 - 131632457 --TCTTTTTTTCG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837718 11 - 6458163 --TCTTTTTTTCG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808826 11 - 106825570 --TCTTTTTTTCG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715721 13 - 158406734 AACTCTTTTTTCC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900002 10 - 84719076 --CTCTTTTTTC- i equCab2.chr6 C 0 I 131 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 13707 361 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=136563.000000 s mm10.chr1_GL456221_random 68735 102 + 206961 GAA----ACAGACT---------TTGGGGACAG----------TGTCCAGTGCCTATTCCCGAGGTTGGACCTTGCAAGTGTCCACAGTGGGCGGTGCCGTTATCATCTTCCAACACTTGCCTAA-------------- s rn5.chr9 29202926 106 - 121549591 GAAAGTTAGAGGCT---------TTGGGGACAG----------TGTCCAGTGCATGTTCCCCAGGTTGGACCTTGCATTTGCCCACGGTGGGCAGTGTCGTCATCATCCTCCCACATTTGCCTAA-------------- i rn5.chr9 C 0 C 0 s hg19.chr2 12114981 126 - 243199373 CC-----AGAGTCCAGCCTGTTATTGTGAATGGAGCCGAGATTTGCCCTCTACCCTCACCTAAGCTCTGATCCTTCA-GTGCCCGCAATAGGCGGC-------TCATCTGTTATCCATTGTGTAAATGACTAGAGGTAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053721 128 - 247518478 CCA---TAGAGTCCAGCCTGTTATTGCGAATGGAGCCGAGATTTGCCCTCTACCCTCACCTAAGCTCTGATCCTACA-GTGCCCGCAATAGGCGGC-------TCATCTGTTATCCATTGTGTAAATGACTAGAGGTAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215528 128 - 131632457 CCA---TAGAGTCCAGCCTGTTATTGTGAATGGAGCCGAGATTTGCCCTCTACCCTCACCTAAGCTCTGATCCTACA-CTGCCCGCAATAGGCGGC-------TCATCTGTTATCCAATGTGTAAATGACTAGAGGTAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837729 128 - 6458163 CCA---TAGAGTCCAGCCTGTTATTGTGAATGGAACCGAGATTTGCCCTCTACCCTCACCTAAGCTCTGATCCTACA-CTGCCCGCAATAGGCGGC-------TCATCTGTTACCCATTGTGTAAATGATTAGAGGTAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808837 128 - 106825570 CCA---TAGAGTCCAGCCTGTTACTGTGAATGGAACCGAGATTTGCCCTCTACCCTCACCTAAGTTCTCATCCTACA-CTGCCGGCAATAGGCAGC-------TCATCTGTTATCCGTTGTGTAAATGACTAGAGGTAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715734 122 - 158406734 CCA---TAGGGTCTATCCTGTTACTGTGAATGGAACCGAGATTTGCCCTCTACCCTCCCCTCAGCTCTGATCC------TGCCCACAGT-GGCTGC-------TCATCTGTTATCCATTGTGTAAATGACTAGAGGTCC i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e equCab2.chr6 66900012 131 - 84719076 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 13707 361 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=218056.000000 s mm10.chr1_GL456221_random 68837 122 + 206961 TTATGGAGCTATTGGGAAAG-AGAAAGT---AAGGGGCGCCCTTACTTC-TCTCTAGCGGGGGTATGGA--TGGTTTTTGTATGTTTGCTTTGTTTTGGTTTTAGTC----CATGGTCATTTCACTGAAATAC s rn5.chr9 29203032 123 - 121549591 TTATGAAGCTATTGGGAAAG-AGAAAAT---GAGAAGCCTCCATACTTC-TCTCTAGC-ACGCTATGGATTTTTTTTTTGTATGTTTGTTTTGTTTTGTTTTTAATC----CATGGTCATTTCACTGAAATAC i rn5.chr9 C 0 C 0 s hg19.chr2 12115107 111 - 243199373 TTGGGAAGCTGGTGGAAAAGAAAAAAAT---GAGAGTACATTTAATTTCGTCTCTAGT-GTATCatgaa----ctttttatatattttctcta----------aata----catgattatttccttgaaataa i hg19.chr2 C 0 C 0 s panTro4.chr2B 12053849 111 - 247518478 TTGGGAAGCTGGTGGAAAAGAAAAAAAT---GAGAGTACATTTAATTTCATCTCTAGT-GTATCatgaa----ctttttatatattttctcta----------aaca----catgattatttccttgaaataa i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215656 111 - 131632457 TTGGGAAGCTGGTGGAAAAGAAAAAAAT---GAGAGTACATTTAATTTCGTCTCTAGT-GTATCATGAA----CTTTTTATATATTTTCTCTA----------AACA----CAtgattatttccttgaaataa i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2837857 111 - 6458163 TTGGGAAGCTGGCGGAAAAGAAAAAAAT---GAAAGTACATTTAATTTCCTCTCTAGT-GTATCatgaa----ctttttatatattttctcta----------aaca----catgattatttccttgaaataa i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12808965 114 - 106825570 TTGGGAAGCTGGTGGAAAAG-AAAAAAT---GAGAGTACATTTAATTTCCTCTCTAGT-GTATCGTGAA----CTTTTTATATATTTtctcta----------aacacactcatgattatttccttgaaataa i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11715856 115 - 158406734 TTGGGAAGCTGGTGGAAAAGGAAAACAT---GAGAGTACATTTAATTTCCTCTCCAAT-GTATCatgaa----ctttttatatattttcttta----------aatgcattcatgattatttccttgaaataa i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900143 117 - 84719076 CTGGGGAGCTGGTGGAAAAG-AGAAAATAAGAAGAGAACAGTTAATTTCCTCTCTAGT-ATATCatgaa----ctttttgtaaattttcttta----------agcatgttcatgactatttccttgaaataa i equCab2.chr6 I 131 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6317060 707 + 10418462 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 13707 361 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=193111.000000 s mm10.chr1_GL456221_random 68959 96 + 206961 ATTACTGTGCGTGAA------AATTCAAGGGAAAT-------------------------GTAATTTTTACAGCTGGTGACCCTGATT-CCAAATAAGCCAC--AGAACACTTG-AATGCTTTTCACTTCT- s rn5.chr9 29203155 97 - 121549591 ATTACTGCGCATGAA------GATTCAAGGG-AAT-------------------------TTAATTTTTACTGCTGGCGACCCTGATTACCAAATGAGCCAC--AGAACACTTGAAATGCTTTCCATTTCT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317767 99 + 10418462 ATTTCTGGAGGTGGA------AATTTGAAGG-AAT-------------------------ACACATTTTAGGACATTTGATGCTGGTTGCTAAATGAGCCACTTGgaggatctcagcctgtttccatttcc- i speTri2.JH393335 I 707 C 0 s hg19.chr2 12115218 97 - 243199373 attattagaagtgga------aattcaaagg-agc-------------------------acatgttttaggacatttgacactgattactaaatcagcctt-cagaacatttggacctgttgaccttcc-- i hg19.chr2 C 0 I 5 s panTro4.chr2B 12053960 97 - 247518478 attattagaagtgga------aattcaaagg-agc-------------------------acatgttttaggacatttgacactgattactaaatcagcctt-cagaacatttggacctgttgaccttcc-- i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 12215767 97 - 131632457 attattagaagtgga------aattcaaagg-agc-------------------------acatgttttaggacatttgacactgattactaaatcagcctc-cagaacatttggacctgttgaccttcc-- i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 2837968 97 - 6458163 attattagaagtgga------aattcaaagg-agc-------------------------acatattttagggcatttgacactgatgactaaatcagcccc-cagaacatttggacctgttgaccttcc-- i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 12809079 97 - 106825570 attattagaagtgga------aattcaaagg-agc-------------------------ccatgtttcagggcattggacactgattactgaatcagcctc-cagaacatttggacctgttgaccttcc-- i rheMac3.chr12 C 0 I 5 s calJac3.chr6 11715971 122 - 158406734 attattagaagtggg------aattcaaagg-aattctgtaatttgtttcaaggaaataatcatattttagggcatttgacgctaattactaaatcagcctc-cagaacattcggacctgtttacgttcc-- i calJac3.chr6 C 0 I 1 s equCab2.chr6 66900260 103 - 84719076 attcctagaagtcaagtttgggactcaaggg-aac-------------------------atatattttagagtatttgacactgattactaaattagccta-cagaacg-ttggatctgtttacatttc-c i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 27612 5135 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 13707 361 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=6020.000000 s mm10.chr1_GL456221_random 69055 4 + 206961 ACCC s rn5.chr9 29203252 4 - 121549591 ACCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317866 4 + 10418462 atcc i speTri2.JH393335 C 0 I 2 s hg19.chr2 12115320 4 - 243199373 acag i hg19.chr2 I 5 C 0 s panTro4.chr2B 12054062 4 - 247518478 acag i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 12215869 4 - 131632457 acag i gorGor3.chr2B I 5 C 0 s nomLeu2.GL397366 2838070 4 - 6458163 acag i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 12809181 4 - 106825570 acag i rheMac3.chr12 I 5 C 0 s papHam1.scaffold15394 32747 4 + 58077 acag i papHam1.scaffold15394 I 5135 I 1966 s calJac3.chr6 11716094 4 - 158406734 actc i calJac3.chr6 I 1 I 4 s equCab2.chr6 66900363 4 - 84719076 acca i equCab2.chr6 C 0 I 4 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 13707 361 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2997.000000 s mm10.chr1_GL456221_random 69059 1 + 206961 T s rn5.chr9 29203256 1 - 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317872 1 + 10418462 t i speTri2.JH393335 I 2 C 0 s hg19.chr2 12115324 1 - 243199373 t i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054066 1 - 247518478 t i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215873 1 - 131632457 t i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838074 1 - 6458163 t i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809185 1 - 106825570 t i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716102 1 - 158406734 t i calJac3.chr6 I 4 C 0 s equCab2.chr6 66900371 1 - 84719076 c i equCab2.chr6 I 4 I 4 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 25509 3678 + 53618 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 13707 361 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2329.000000 s mm10.chr1_GL456221_random 69060 1 + 206961 A s rn5.chr9 29203257 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317873 1 + 10418462 g i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115325 1 - 243199373 g i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054067 1 - 247518478 g i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215874 1 - 131632457 g i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838075 1 - 6458163 g i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809186 1 - 106825570 g i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716103 1 - 158406734 g i calJac3.chr6 C 0 C 0 s turTru2.JH490333 29187 1 + 53618 a i turTru2.JH490333 I 3678 I 99 s choHof1.scaffold_22666 14068 1 - 17749 g i choHof1.scaffold_22666 I 361 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e equCab2.chr6 66900372 4 - 84719076 I e tarSyr1.scaffold_28366 5915 782 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3890.000000 s mm10.chr1_GL456221_random 69061 3 + 206961 TCA s rn5.chr9 29203258 3 - 121549591 CTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317874 3 + 10418462 cct i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115326 3 - 243199373 tct i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054068 3 - 247518478 tct i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215875 3 - 131632457 tct i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838076 3 - 6458163 tct i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809187 3 - 106825570 tct i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716104 3 - 158406734 tct i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_28366 6697 3 - 22953 tca i tarSyr1.scaffold_28366 I 782 I 5837 s choHof1.scaffold_22666 14069 3 - 17749 gca i choHof1.scaffold_22666 C 0 I 69 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29188 99 + 53618 I e equCab2.chr6 66900372 4 - 84719076 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=116293.000000 s mm10.chr1_GL456221_random 69064 68 + 206961 TGGACTGTGGCTATTGTTTCGTCTCCTGGTCACTTTGATAGTACTATGCACTGTCAAGT------------CCTT-CGACT s rn5.chr9 29203261 64 - 121549591 GGGAGGGTGGCTGTTGTTTTCTTTCCTGGTCACTTTG-----AATATGCGCTATCAAGG------------CCTTCCCACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317877 62 + 10418462 gggattgttgctgttgttttctgtcttggccaa---gacaggcagatgtgcggtcacat------------tgtc----tt i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115329 70 - 243199373 gagattattactattattttctatcttggccaatttgatagacaaatatgttatcaaattgtcttcattt----------- i hg19.chr2 C 0 I 320 s panTro4.chr2B 12054071 59 - 247518478 gagattattgctattattttctatcttggccaatttgatagacaaatatgttatcaaat---------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215878 59 - 131632457 gagaTTATTGCTATTATTTTCTatcttggccaatttgatagacaaatatgttatcaaat---------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838079 59 - 6458163 gagattattgctattattttctatcttggccaatttgatagacaaatatgttatcaaat---------------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809190 59 - 106825570 gagattattgctattattttctatcttggccaatttgatagacaaatatgttatcaaat---------------------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716107 60 - 158406734 ggaattatggccattattttctaccttggccaatttgatagacaaatatgttatccaac-----------t---------- i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900376 75 - 84719076 gcgattatttctagtattttctatcttggccaacttgataggcaaatatgttatcaaattgtcttcctttgcact------ i equCab2.chr6 I 4 I 18 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29188 99 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14072 69 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-4735.000000 s mm10.chr1_GL456221_random 69132 5 + 206961 TGTCT-- s rn5.chr9 29203325 5 - 121549591 TGTCT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317939 5 + 10418462 tctgt-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115719 5 - 243199373 tttat-- i hg19.chr2 I 320 C 0 s panTro4.chr2B 12054130 1 - 247518478 ----t-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215937 1 - 131632457 ----t-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838138 1 - 6458163 ----t-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809249 1 - 106825570 ----t-- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66900469 5 - 84719076 ttact-- i equCab2.chr6 I 18 C 0 s choHof1.scaffold_22666 14141 5 - 17749 --tttgc i choHof1.scaffold_22666 I 69 I 12 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29188 99 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11716167 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=327.000000 s mm10.chr1_GL456221_random 69137 5 + 206961 GCCTT s rn5.chr9 29203330 5 - 121549591 GACTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317944 5 + 10418462 gcatt i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115724 5 - 243199373 gcttt i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054131 5 - 247518478 gtctt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215938 5 - 131632457 gtctt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838139 5 - 6458163 gtctt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809250 4 - 106825570 gtct- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716167 4 - 158406734 gtct- i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900474 3 - 84719076 gtt-- i equCab2.chr6 C 0 I 4 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29188 99 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14146 12 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-20093.000000 s mm10.chr1_GL456221_random 69142 5 + 206961 T------------TCCC- s rn5.chr9 29203335 5 - 121549591 T------------TCCC- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317949 5 + 10418462 t------------ttct- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115729 5 - 243199373 ctact------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054136 1 - 247518478 c----------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215943 1 - 131632457 c----------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838144 9 - 6458163 c----atttacac----- i nomLeu2.GL397366 C 0 I 153 s turTru2.JH490333 29287 5 + 53618 -------------ttacc i turTru2.JH490333 I 99 C 0 s equCab2.chr6 66900481 4 - 84719076 -------------ttaa- i equCab2.chr6 I 4 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e rheMac3.chr12 12809254 0 - 106825570 C e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11716171 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14146 12 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-3653.000000 s mm10.chr1_GL456221_random 69147 3 + 206961 A--GA s rn5.chr9 29203340 3 - 121549591 A--GC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317954 5 + 10418462 aatga i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115734 2 - 243199373 ---ag i hg19.chr2 C 0 C 0 s turTru2.JH490333 29292 3 + 53618 -atg- i turTru2.JH490333 C 0 I 502 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e rheMac3.chr12 12809254 0 - 106825570 C e equCab2.chr6 66900485 0 - 84719076 C e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2838153 153 - 6458163 I e gorGor3.chr2B 12215944 0 - 131632457 C e panTro4.chr2B 12054137 0 - 247518478 C e calJac3.chr6 11716171 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14146 12 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-7592.000000 s mm10.chr1_GL456221_random 69150 2 + 206961 TT---- s rn5.chr9 29203343 2 - 121549591 TT---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317959 6 + 10418462 ctagca i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115736 3 - 243199373 ct---a i hg19.chr2 C 0 C 0 s rheMac3.chr12 12809254 2 - 106825570 -t---c i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716171 2 - 158406734 -t---c i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900485 2 - 84719076 ----tc i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2838153 153 - 6458163 I e gorGor3.chr2B 12215944 0 - 131632457 C e panTro4.chr2B 12054137 0 - 247518478 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14146 12 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2804.000000 s mm10.chr1_GL456221_random 69152 9 + 206961 ---AATTATGCA s rn5.chr9 29203345 9 - 121549591 ---AATTATGCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317965 9 + 10418462 ---agttaagct i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115739 9 - 243199373 ---gttaacatg i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054137 9 - 247518478 ---atttacact i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215944 9 - 131632457 ---atttacact i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12809256 9 - 106825570 ---atttacgct i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716173 9 - 158406734 ---atttacatg i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900487 9 - 84719076 ---tattatgca i equCab2.chr6 C 0 C 0 s choHof1.scaffold_22666 14158 9 - 17749 gctagtgag--- i choHof1.scaffold_22666 I 12 I 12 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2838153 153 - 6458163 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-3123.000000 s mm10.chr1_GL456221_random 69161 6 + 206961 T--------TCATT s rn5.chr9 29203354 6 - 121549591 T--------TCATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317974 14 + 10418462 tttcacagatcatt i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115748 6 - 243199373 c--------ttatc i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054146 6 - 247518478 t--------ttttt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215953 6 - 131632457 t--------ttttt i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12809265 6 - 106825570 t--------tgttt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716182 6 - 158406734 t--------tggat i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900496 2 - 84719076 t--------t---- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2838153 153 - 6458163 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14167 12 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-13370.000000 s mm10.chr1_GL456221_random 69167 6 + 206961 GTATAT-- s rn5.chr9 29203360 5 - 121549591 GTA-AT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317988 6 + 10418462 gcacat-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115754 2 - 243199373 gt------ i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054152 1 - 247518478 g------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215959 1 - 131632457 g------- i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12809271 1 - 106825570 g------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716188 1 - 158406734 g------- i calJac3.chr6 C 0 C 0 s choHof1.scaffold_22666 14179 6 - 17749 --gcatat i choHof1.scaffold_22666 I 12 I 17 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e equCab2.chr6 66900498 0 - 84719076 C e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2838153 153 - 6458163 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-5423.000000 s mm10.chr1_GL456221_random 69173 9 + 206961 GATGCTCAT s rn5.chr9 29203365 9 - 121549591 GATGCTCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6317994 9 + 10418462 gtggcttat i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115756 4 - 243199373 -----atta i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054153 4 - 247518478 -----gttg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215960 4 - 131632457 -----tttg i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12809272 4 - 106825570 -----tttg i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716189 4 - 158406734 -----attt i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900498 4 - 84719076 -----tgac i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2838153 153 - 6458163 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14185 17 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4095.000000 s mm10.chr1_GL456221_random 69182 1 + 206961 T s rn5.chr9 29203374 1 - 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318003 1 + 10418462 t i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115760 1 - 243199373 t i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054157 1 - 247518478 t i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12215964 1 - 131632457 t i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12809276 1 - 106825570 t i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716193 1 - 158406734 t i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900502 1 - 84719076 t i equCab2.chr6 C 0 C 0 s choHof1.scaffold_22666 14202 1 - 17749 t i choHof1.scaffold_22666 I 17 I 2585 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2838153 153 - 6458163 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3545.000000 s mm10.chr1_GL456221_random 69183 6 + 206961 TTATTG s rn5.chr9 29203375 6 - 121549591 TTATTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318004 6 + 10418462 cttctc i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115761 6 - 243199373 tcattg i hg19.chr2 C 0 I 27 s panTro4.chr2B 12054158 6 - 247518478 ttgttg i panTro4.chr2B C 0 I 143 s gorGor3.chr2B 12215965 6 - 131632457 tttttg i gorGor3.chr2B C 0 I 3 s rheMac3.chr12 12809277 5 - 106825570 t-gttg i rheMac3.chr12 C 0 I 3 s calJac3.chr6 11716194 6 - 158406734 gttttg i calJac3.chr6 C 0 I 10 s equCab2.chr6 66900503 6 - 84719076 taattg i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2838153 153 - 6458163 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-10057.000000 s mm10.chr1_GL456221_random 69189 24 + 206961 AT------TGTTTGGGGC---TTTGTCTTTCCT--- s rn5.chr9 29203381 30 - 121549591 TTTGCTTGTGTTTGGGGC---TTTGTCTTTCCT--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318010 27 + 10418462 tt------agttgcgtgctcatttttttttcca--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115794 24 - 243199373 tc------tgttcatgta---ttttgctttttt--- i hg19.chr2 I 27 I 8 s gorGor3.chr2B 12215974 14 - 131632457 -t------tgttgttg------------ttgtt--- i gorGor3.chr2B I 3 I 9 s rheMac3.chr12 12809285 23 - 106825570 -t------tgttttgaga---cggagtctcgct--- i rheMac3.chr12 I 3 I 88 s calJac3.chr6 11716210 14 - 158406734 tt------tgtttgt-------------ttgtt--- i calJac3.chr6 I 10 I 1 s equCab2.chr6 66900509 27 - 84719076 ct------tgtttatatc---ttttgctttttttct i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2838153 153 - 6458163 I e panTro4.chr2B 12054164 143 - 247518478 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=315.000000 s mm10.chr1_GL456221_random 69213 21 + 206961 -AATGGGTGTT----TGTCTTTCCAT s rn5.chr9 29203411 25 - 121549591 -AATGGATGTTTGTCTGTCTTTTCCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318037 18 + 10418462 -cttagacgtt----tgtatttt--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115826 20 - 243199373 -gttggatgtt----tg-tcttttgc i hg19.chr2 I 8 I 1 s gorGor3.chr2B 12215997 21 - 131632457 -gatggagtct----cgctctgtcac i gorGor3.chr2B I 9 I 88 s calJac3.chr6 11716225 16 - 158406734 ------gtgtt----tgttttgagat i calJac3.chr6 I 1 I 106 s equCab2.chr6 66900536 22 - 84719076 acatagatgtt----tgtcttttgct i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e rheMac3.chr12 12809308 88 - 106825570 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2838153 153 - 6458163 I e panTro4.chr2B 12054164 143 - 247518478 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=20893.000000 s mm10.chr1_GL456221_random 69234 42 + 206961 AATTTATTTGTAAGG-CCCTTAACATAATAAAAACCTGCATGC s rn5.chr9 29203436 42 - 121549591 AATTTATTTGTAAGG-CCCTTAACATAATAAAAACCTGAATGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318055 42 + 10418462 -gcttatttgcaaagtccctttacataATAAAAATCTGAACAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115847 41 - 243199373 tattcgtttgcaaaatctctttacataataaaaatCTGAAC-- i hg19.chr2 I 1 C 0 s equCab2.chr6 66900558 43 - 84719076 cattcatttttaagactcctttacagaataaaaatCTGAACAC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e rheMac3.chr12 12809308 88 - 106825570 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2838153 153 - 6458163 I e gorGor3.chr2B 12216018 88 - 131632457 I e panTro4.chr2B 12054164 143 - 247518478 I e calJac3.chr6 11716241 106 - 158406734 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-3910.000000 s mm10.chr1_GL456221_random 69276 2 + 206961 --AG s rn5.chr9 29203478 2 - 121549591 --AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318097 2 + 10418462 --AG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115888 1 - 243199373 --A- i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 2838306 1 - 6458163 --a- i nomLeu2.GL397366 I 153 C 0 s equCab2.chr6 66900601 2 - 84719076 TC-- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e rheMac3.chr12 12809308 88 - 106825570 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e gorGor3.chr2B 12216018 88 - 131632457 I e panTro4.chr2B 12054164 143 - 247518478 I e calJac3.chr6 11716241 106 - 158406734 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=816.000000 s mm10.chr1_GL456221_random 69278 1 + 206961 G s rn5.chr9 29203480 1 - 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318099 1 + 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115889 1 - 243199373 G i hg19.chr2 C 0 I 1 s nomLeu2.GL397366 2838307 1 - 6458163 g i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809396 1 - 106825570 g i rheMac3.chr12 I 88 C 0 s equCab2.chr6 66900603 1 - 84719076 G i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e gorGor3.chr2B 12216018 88 - 131632457 I e panTro4.chr2B 12054164 143 - 247518478 I e calJac3.chr6 11716241 106 - 158406734 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1883.000000 s mm10.chr1_GL456221_random 69279 1 + 206961 C s rn5.chr9 29203481 1 - 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318100 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115891 1 - 243199373 C i hg19.chr2 I 1 C 0 s panTro4.chr2B 12054307 1 - 247518478 c i panTro4.chr2B I 143 C 0 s nomLeu2.GL397366 2838308 1 - 6458163 c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809397 1 - 106825570 t i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66900604 1 - 84719076 C i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e gorGor3.chr2B 12216018 88 - 131632457 I e calJac3.chr6 11716241 106 - 158406734 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=5969.000000 s mm10.chr1_GL456221_random 69280 5 + 206961 AGC--TG s rn5.chr9 29203482 5 - 121549591 ATC--TG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318101 7 + 10418462 ATCTATG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115892 5 - 243199373 ATA--TA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054308 5 - 247518478 aga--tg i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12216106 5 - 131632457 aac--tg i gorGor3.chr2B I 88 I 23 s nomLeu2.GL397366 2838309 5 - 6458163 agc--tg i nomLeu2.GL397366 C 0 I 23 s rheMac3.chr12 12809398 5 - 106825570 agc--tg i rheMac3.chr12 C 0 I 23 s calJac3.chr6 11716347 5 - 158406734 agc--tg i calJac3.chr6 I 106 C 0 s equCab2.chr6 66900605 5 - 84719076 ATA--TG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-8879.000000 s mm10.chr1_GL456221_random 69285 4 + 206961 AG---------------------AC s rn5.chr9 29203487 4 - 121549591 AG---------------------AC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318108 4 + 10418462 AG---------------------AT i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 12054314 2 - 247518478 -----------------------gc i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12216134 2 - 131632457 -----------------------gc i gorGor3.chr2B I 23 C 0 s nomLeu2.GL397366 2838337 2 - 6458163 -----------------------gc i nomLeu2.GL397366 I 23 C 0 s rheMac3.chr12 12809426 2 - 106825570 -----------------------ta i rheMac3.chr12 I 23 C 0 s calJac3.chr6 11716352 25 - 158406734 ggactacaggcatgtgcccccacac i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900610 4 - 84719076 ---------------------ACAC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e hg19.chr2 12115897 0 - 243199373 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=8495.000000 s mm10.chr1_GL456221_random 69289 14 + 206961 ACAGGATCTTTTTT-- s rn5.chr9 29203491 14 - 121549591 ACAGGATCTttttt-- i rn5.chr9 C 0 I 149 s speTri2.JH393335 6318112 14 + 10418462 GTGGCATCTTTTTt-- i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 12054316 16 - 247518478 acagctaatttttgta i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216136 16 - 131632457 ccagctaatttttgta i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838339 16 - 6458163 ccagctaatttttgta i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809428 16 - 106825570 caaactaatttttgta i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716377 16 - 158406734 ccagctaatttttgta i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e equCab2.chr6 66900614 0 - 84719076 C e tarSyr1.scaffold_28366 6700 5837 - 22953 I e hg19.chr2 12115897 0 - 243199373 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=13467.000000 s mm10.chr1_GL456221_random 69303 17 + 206961 CCCCtcttcaagacaga---- s speTri2.JH393335 6318126 14 + 10418462 c---tttttaagagaga---- i speTri2.JH393335 C 0 I 121 s panTro4.chr2B 12054332 17 - 247518478 ----tttttagtagagacagg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216152 17 - 131632457 ----tttttagtagagacagg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838355 16 - 6458163 ----ttttcagtagagaca-g i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809444 17 - 106825570 ----tttttagtagagacagg i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716393 17 - 158406734 ----tttttagtagagacagg i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e equCab2.chr6 66900614 0 - 84719076 C e tarSyr1.scaffold_28366 6700 5837 - 22953 I e hg19.chr2 12115897 0 - 243199373 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29203505 149 - 121549591 I a score=66794.000000 s mm10.chr1_GL456221_random 69320 78 + 206961 attt--ctgtgtagccctgagtgtcctggaactatatatatcaggatggtctccaactgcctttgcctcca-----gtgctggca s panTro4.chr2B 12054349 80 - 247518478 gtttcaccatgttggccaggctggtctcgaactcctgacctaagctga---tccgcccacctcaacctccc--aaagtgctggga i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216169 80 - 131632457 gtttcaccatgttggccaggctggtctcgaactcctgacctcagctga---tccgcccacctcaacctccc--aaagtgctggga i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838371 80 - 6458163 gtttcaccatgtcagccaggctggtctcaaactcctgacctcaggtga---tccacctgcctcgacctccc--aaagtgctggga i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809461 80 - 106825570 gtttcaccatgttggccaggctggtctagaactcctgacctcaggtga---tcctcccacctcgacctccc--aaaatgctggga i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716410 82 - 158406734 atttcaccatgttggcctggctggtctcaaactcctgacctcaggtta---tccgcccgccttggcctcccaaaaagtgctggga i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6318140 121 + 10418462 I e turTru2.JH490333 29295 502 + 53618 I e equCab2.chr6 66900614 0 - 84719076 C e tarSyr1.scaffold_28366 6700 5837 - 22953 I e hg19.chr2 12115897 0 - 243199373 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29203505 149 - 121549591 I a score=9227.000000 s mm10.chr1_GL456221_random 69398 7 + 206961 ttaaagg s panTro4.chr2B 12054429 7 - 247518478 ttacagg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216249 7 - 131632457 ttacagg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2838451 7 - 6458163 ttacagg i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809541 7 - 106825570 ttacagg i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716492 7 - 158406734 ttacagg i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900614 7 - 84719076 TTAATGT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6318140 121 + 10418462 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e hg19.chr2 12115897 0 - 243199373 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29203505 149 - 121549591 I a score=14745.000000 s mm10.chr1_GL456221_random 69405 21 + 206961 cttgcaccatttcctcaggct s speTri2.JH393335 6318261 21 + 10418462 cttgagccacatccccagccc i speTri2.JH393335 I 121 C 0 s panTro4.chr2B 12054436 21 - 247518478 catgagccaccatgcctggcc i panTro4.chr2B C 0 I 11 s gorGor3.chr2B 12216256 21 - 131632457 cataagccaccatgcctggcc i gorGor3.chr2B C 0 I 11 s nomLeu2.GL397366 2838458 21 - 6458163 catgagccaccatgcctggcc i nomLeu2.GL397366 C 0 I 181 s rheMac3.chr12 12809548 21 - 106825570 catgagctaccatgcctagcc i rheMac3.chr12 C 0 I 180 s calJac3.chr6 11716499 21 - 158406734 catgactcactgtgtccagcc i calJac3.chr6 C 0 I 180 s equCab2.chr6 66900621 9 - 84719076 CACACACCA------------ i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e hg19.chr2 12115897 0 - 243199373 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29203505 149 - 121549591 I a score=1564.000000 s mm10.chr1_GL456221_random 69426 1 + 206961 T s rn5.chr9 29203654 1 - 121549591 T i rn5.chr9 I 149 C 0 s speTri2.JH393335 6318282 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115897 1 - 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054468 1 - 247518478 t i panTro4.chr2B I 11 I 169 s gorGor3.chr2B 12216288 1 - 131632457 t i gorGor3.chr2B I 11 I 169 s nomLeu2.GL397366 2838660 1 - 6458163 T i nomLeu2.GL397366 I 181 C 0 s rheMac3.chr12 12809749 1 - 106825570 T i rheMac3.chr12 I 180 C 0 s calJac3.chr6 11716700 1 - 158406734 T i calJac3.chr6 I 180 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e equCab2.chr6 66900630 0 - 84719076 C e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=630434.000000 s mm10.chr1_GL456221_random 69427 292 + 206961 GAGATACCATATCTTGCACAGTGAG-AAACAAAATAT-CAGAGACAGACACACTCTACTGTA-GATTGGTGTCCTTGGCACAGGTACTTAACCTCTGTAGATCTGACTTCCATCTTCGGAAACTGTGGCAGGCGGCAAATGTCAAAGTT-GCCACAGCAGCTTAGGTCTGAGTGCTGCT---------GCCATCCTAAGCAGAACC-------------------CAGAGCACATGTTCTTGCTGCCTCCCCTCCCCTC------------------------------------CCCCACAAGTAGCCT---CAACAGCTTTCCCTCCCACCTGT-----C----CCCAGTCTGCCAGGATTCCCTCAGGA s rn5.chr9 29203655 287 - 121549591 GAGGTACAGTATCTTGCACAGGGAA-AAACAAAGTAT-CAGAGACAGACACACTCTACTGTA-GATTGGTGTCCTAGGGCTAGGTACTTAACCTCTGTTGGTCTGACTTC-------AGAAACTGCGGCAGGTGACAAATGACAAAGCT-GTCACAGTG---TAGGCCTGAGTGCTGCTCTATAACAAGTCATCCTAAGTGGCGCC-------------------CAGAGCACATGTTCATGCTGCCCCCCC--------------------------------------------ACCATGCATATCCT---CAACAGCTTTCTCACCCACCTGT-----CTGTCCCCTGTCTGCCTGAATTTCCTCAGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318283 294 + 10418462 GAGATGTGGCATCTTTCATAGTGAGCAAACAGGAAATAAAGAGTCAGATAAAGCCTGCTTTGCCCctggatgccttgggctggttacttaacctgcctcattctcatctt-------tcaggatgaggaaggaggaGTTTGGTGAGGTC-------------CTATTTGGAATGCTGTTGTATGATGAAGGGTCCTAAGTGAAGCC-------------------CGTGGTTGGTGTGGGGGTGGCCTCCCTCTGGCTCC-CAT-TGA---------------------------CTCTGCACTCACCCT---TA----CACTCTCTCCTCCCTGTGCACACCGTTCTCTATCTTTTAGGATTTCTTCA--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12115898 348 - 243199373 gagatgtagtatcttgcatagaaag-aaacagggctt-tagagtcagacaagctctgctttgccactgaataccttgggtgagttactaaacctctctgtgcctccctttcatcTTTGGGACTCATGACAGATGAAGAATGAGGAAGCT-CTAGACTTC---CTGTTCTGAGCGCTGCTGTATAATGAATTGTTCTAAAAGGAGCCTCCAAGACCCCTTCCTCTTCTTAGTATATGTTTACTCTGCCTTTCTCTGACTTTGCAC-TGATCTTTGCACTATC--------TCCTTCCCCTGTGCATATTGTGGATAGTAGATTTCTCTCCTATCTGT-----T----CTCTATCTTCCAAGACTTCTTTACCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054638 348 - 247518478 gagatgtagtatcttgcatagaaag-aaacagggctt-tagagtcagacaagctctgctttgccactgaataccttgggtgagttactaaacctctctgtgcctccctttcatcTTTGGGACTCATGACAGATGAAGAATGAGGAAGCT-CTAGACTTC---CTGTTCTGAGCGCTGCTGTATAATGAATTGTTCTAAAAGGAGCCTCCAAGACCCCTTCCTCTTCTTAGTATATGTTTACTCTGACTTTCTCTGACTTTGCAC-TGATCTTTGCACTATC--------TCCTTCCCCTGTGCATATTGTGGATAGTAGATTTCTCtcctatctgt-----t----ctctatcttccaagacttcttcacca i panTro4.chr2B I 169 C 0 s gorGor3.chr2B 12216458 348 - 131632457 gagatgtagtatcttgcatagaaag-aaacagggctt-tagagtcagacaagctctgctttgccactgaataccttgggtgagttactaaacctctctgtgcctccctttcatcTTTGGGACTcgtgacagatgaagaatgaggaagct-ctggacttc---ctgttccgagcgctgctgtagaatgaattgttctaaaaggagcctccaagaccccttcctcttcttagtatatgtttactctgactttCTCTGACTTTGCAC-TGATCTTTGCACTATC--------TCCTTCCCCTGTGCATATTGTGGATAGTAGATTTCTCtcctatctgt-----t----ctctatcttccaagacttcttcacca i gorGor3.chr2B I 169 C 0 s nomLeu2.GL397366 2838661 349 - 6458163 gagatgtagtatcttgcatagaaag-aaacaggactt-tagagtcagacaagctctgctttgccactgaataccttgggtgagttactaaacctctctgtgcctccctttcatcTTTGGGACTCATGACAGATGAAGAATGAGGAAGCT-CCAGACTTC---CTGTTCTGAGCGCTGCTGTATAATGAATTGTTCTAAAAGGAGCCCCCAAGACCGTTTCCTCTTCTTAATATATGTTTATTCTGACTTTCTCTGACTTTGCACTTGATCTTTGCACCATC--------TCCTTCCCCTATGCATATTGTGGATAGTAGATTTCTCtcctatctgt-----t----ctctctcttccaagacttcttcacca i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12809750 348 - 106825570 gagatatagtgtcttgcatagatag-aaacaggattt-tagagtcagacaagctctgctttgccactgaataccttgtgtgacttactaaacctctctgtgcctccctttcatcTTTGGGACTCATGACAGACGAAGAATGAGGAAGCT-CCAGACTTC---CTGTGCTGAGCGCTGCTGTATAATGAATTGTTCTAAAAGGAGCCCCCCAGACCCCTTCCTCTTCTTAGTATATGTTTATTCTGACTTTCTCTGACTTTGCAC-TGATCTTTGCACTATC--------TCCTTCCCCTAGGCATATTGTGGATAGTAGATTTCTCtcctatctgt-----t----ctctatcttccaagacttcttcccga i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11716701 347 - 158406734 gagatgtagtatcttgtatagagag-aaacaggatat-tagagtcagacaagctctactttgccactgaataccttgggtgagttacttgatctctctgtgcccccctttcatcTTTGGGACTCATGACAGATAAAGAATGAGGAAGCT-TCAGACTTC---CTGTTCTGAGCACTGCTATGTAATGAACTGTCCTAAAAGAAGCC-CCAAGACCCCTTCCTCTTCTTAGCATATATTCATTCTGACTTTCTCTGACTCTGCAC-TGATCTTTGCACTATC--------TCCTTCCCCTAGCTATATTGTGGATAGTAGATTTCTCTCCTATCTGT-----T----CTCTGTCTTCCAAAACTTCTTCCCCA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66900630 334 - 84719076 --------------------GTGAG-AAATGGAGCTT-T--AGTCAGACaagctctgctttgccactgaatacctggggctagttacttaacctctctgtacctcactttcatcCTTCGGAATGGTAACAGATGAAGAGTGAGGAACCTGGCGAATGTT---CTGCACCGAATTCTGTTGTATAATTAATCATCCTAAATGTAACC-CCAGGGCCCCTTCCTCTTCTTATCATGTGTTCACTCTCGCTTTCTCTGGCTCTGTGC-TGATCTTTGCAATGTCTTTCTCGGTCCTTACCCTGTCCATATCATGGATGCTCTATTTCTCTCCCATCTGT-----C----CTCTATCTTCCAGGATTTCTTCACGA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29295 502 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-5704.000000 s mm10.chr1_GL456221_random 69719 4 + 206961 CTG--G s rn5.chr9 29203942 4 - 121549591 CTG--A i rn5.chr9 C 0 C 0 s hg19.chr2 12116246 6 - 243199373 CCACAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12054986 6 - 247518478 ccacag i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216806 6 - 131632457 ccacag i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839010 6 - 6458163 tcacag i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810098 6 - 106825570 ccacag i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717048 6 - 158406734 CCACTG i calJac3.chr6 C 0 C 0 s turTru2.JH490333 29797 2 + 53618 --at-- i turTru2.JH490333 I 502 I 78 s equCab2.chr6 66900964 4 - 84719076 CTAT-- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6318577 0 + 10418462 C e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=75924.000000 s mm10.chr1_GL456221_random 69723 60 + 206961 --ATGATCCTTGACACATCTCCCTGCTCTACAGTCCTACTGTGAAGTTGGCTTCTTTTTGTT- s rn5.chr9 29203946 60 - 121549591 --ACGGTCCATGACACACCTCCCCGTTCCACAGTTCCCCTGTGAAATTGTCTTCTTTTTGTT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318577 52 + 10418462 ----------TGAAGCCCGCATCTGTTCTCCTTTACCACTGCTGTTGTGGattattattatt- i speTri2.JH393335 C 0 I 116 s hg19.chr2 12116252 48 - 243199373 --ACTCTCAATGGCATCTTTTCTTGTTTTCCTATGCGATTGCGGA------------TTATT- i hg19.chr2 C 0 I 1 s panTro4.chr2B 12054992 48 - 247518478 --actctcaatggcatcttttcttgttttcctatgcgattgcgga------------ttatt- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12216812 48 - 131632457 --actctcaatggcatcttttcttgttttcctatgctattgcgga------------ttatt- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2839016 48 - 6458163 --actctcaatggcatcttttcttgttttccaatgctattgcgga------------ttatt- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12810104 48 - 106825570 --attctcagtggcatcttttcttgttttccagggctattgcaga------------ttatt- i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11717054 48 - 158406734 --ACTCTCAATAGCATCTTTTCTGGTTTTCCAGTGCTATTGCAGA------------TTATT- i calJac3.chr6 C 0 I 1 s equCab2.chr6 66900968 51 - 84719076 AGACTCCCTATGGCATCTTTTCTTGTTTTCCAAGACTGTTGTGGA------------TTAGTC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29799 78 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=34278.000000 s mm10.chr1_GL456221_random 69783 19 + 206961 -TTCTCCTCA---ACATTTTTTT s rn5.chr9 29204006 17 - 121549591 -TTCTCCTCA---AG--TTTTTC i rn5.chr9 C 0 C 0 s hg19.chr2 12116301 19 - 243199373 -TTTTCATGA---GTATTTTTTT i hg19.chr2 I 1 C 0 s panTro4.chr2B 12055041 19 - 247518478 -ttttcatga---gtattttttt i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12216861 19 - 131632457 -ttttcatga---gtattttttt i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2839065 19 - 6458163 -ttttcatga---gtattttttt i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12810153 19 - 106825570 -ttttcatga---gtactttttt i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11717103 19 - 158406734 -TTTTCATGA---TTTTTTTTTT i calJac3.chr6 I 1 C 0 s equCab2.chr6 66901019 23 - 84719076 TTTTTTACAACATGTATTTTTTT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6318629 116 + 10418462 I e turTru2.JH490333 29799 78 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1722.000000 s mm10.chr1_GL456221_random 69802 1 + 206961 T s rn5.chr9 29204023 1 - 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 12116320 1 - 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055060 1 - 247518478 c i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216880 1 - 131632457 c i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839084 1 - 6458163 c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810172 1 - 106825570 c i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717122 1 - 158406734 T i calJac3.chr6 C 0 C 0 s turTru2.JH490333 29877 1 + 53618 c i turTru2.JH490333 I 78 I 363 s equCab2.chr6 66901042 1 - 84719076 C i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6318629 116 + 10418462 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=176022.000000 s mm10.chr1_GL456221_random 69803 92 + 206961 TGCTAAGTT-GAAGAGATTGGGAA---AGAAGAAAAAAGGGACGGACAAGTCTACTCAATGTGATGCTGGGATTAAATTCCTGGAAATACTCTTTG s rn5.chr9 29204024 85 - 121549591 TGCTAAGTT-TAAGGGACTAGGAA---AGAAGAAAG-------GGACCAGACTGCTTAATTTGATGCTGAAATTAAATTCCTGGAAATATATATTA i rn5.chr9 C 0 C 0 s hg19.chr2 12116321 87 - 243199373 TGCCAAGTT-AAAAAAATTGGGGAATGAGGAGAAAG-------AGACTAGGGTGCTTAATCTGCCACTGGGATTAAATCCCTGTAAACAGTTGTT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055061 87 - 247518478 tgccaagtt-aaaaaaattggggaatgaggagaaag-------aaactagggtgcttaatctgccaCTGGGATTAAATCCCTGGAAACAGTTGTT- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216881 87 - 131632457 tgccaagtt-aaaaaaattggggaatgaggagaaag-------agactagggtgcttaatctgccaCTGGGATTAAATCCCTGGAAACAGTTGTT- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839085 87 - 6458163 tgccaagtt-aaaaaaattggggaatgaggagaaag-------aaactaggatgcttaatctgccatcggcattaaatccccggaaacAGTTGTT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810173 87 - 106825570 tgccaagtt-aaaaacattggggaatgaggagaaag-------agactatggtgcttaatccgccaCTGGGATTAAATCCCTGGAAACAGTTGTT- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717123 88 - 158406734 TGCCAAGTTAAAAAAAAATTGGGAATGAGGAGAAAG-------AGACTAGGGTGCTTCATCTGCTACTGGAATTAAATCCCTGGAAACAGTTGTT- i calJac3.chr6 C 0 C 0 s equCab2.chr6 66901043 87 - 84719076 TGTCAAACT-TAAAGGATTTGGGAATGATGAGAGAG-------AGACAGGGGTTTTCAATCGGCCGCTGGGATGAAACCCCTAGAAATCCTCATT- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6318629 116 + 10418462 I e turTru2.JH490333 29878 363 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-8069.000000 s mm10.chr1_GL456221_random 69895 16 + 206961 GAAATACTCTTTAATA------- s rn5.chr9 29204109 3 - 121549591 CAG-------------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318745 5 + 10418462 -----------ggatt------- i speTri2.JH393335 I 116 C 0 s hg19.chr2 12116408 8 - 243199373 --------AATTACGA------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055148 8 - 247518478 --------AATTACGA------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216968 8 - 131632457 --------AATTACAA------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839172 8 - 6458163 --------AATTACAA------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810260 8 - 106825570 --------AATTACAA------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717211 8 - 158406734 --------AATTACAA------- i calJac3.chr6 C 0 C 0 s equCab2.chr6 66901130 15 - 84719076 --------AATTACAGTGCAATT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29878 363 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1564.000000 s mm10.chr1_GL456221_random 69911 1 + 206961 T s speTri2.JH393335 6318750 1 + 10418462 a i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116416 1 - 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055156 1 - 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216976 1 - 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839180 1 - 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810268 1 - 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717219 1 - 158406734 T i calJac3.chr6 C 0 C 0 s equCab2.chr6 66901145 1 - 84719076 T i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29878 363 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29204112 0 - 121549591 C a score=26083.000000 s mm10.chr1_GL456221_random 69912 20 + 206961 TTTATATTCTGTTTTAAAAA---- s rn5.chr9 29204112 19 - 121549591 -TAATATTCTGTTTAAAAAG---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318751 15 + 10418462 ttctttttttgtCtt--------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116417 20 - 243199373 TTACTTTTCTGTTCAACACA---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055157 20 - 247518478 TTACTTTTCTGTTCAACACA---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216977 20 - 131632457 TTACTTTTCTGTTCAACACA---- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839181 20 - 6458163 TTAGTTTTCTGTTCAACACA---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810269 20 - 106825570 TTAGTTTTCTGTTCAACACA---- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717220 19 - 158406734 TTAA-TTTCTGTTCAACACA---- i calJac3.chr6 C 0 C 0 s equCab2.chr6 66901146 17 - 84719076 -------TCTCTTTGATACAAAAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29878 363 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9057498 1804 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3390.000000 s mm10.chr1_GL456221_random 69932 2 + 206961 GA s rn5.chr9 29204131 2 - 121549591 GA i rn5.chr9 C 0 C 0 s hg19.chr2 12116437 2 - 243199373 AA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055177 2 - 247518478 AA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216997 2 - 131632457 AA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839201 2 - 6458163 AA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810289 2 - 106825570 AA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717239 2 - 158406734 AA i calJac3.chr6 C 0 C 0 s felCat5.chrC1 9059302 2 - 221441202 GT i felCat5.chrC1 I 1804 I 132 s equCab2.chr6 66901163 2 - 84719076 GA i equCab2.chr6 C 0 I 5 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6318766 0 + 10418462 C e turTru2.JH490333 29878 363 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=60140.000000 s mm10.chr1_GL456221_random 69934 232 + 206961 GGAAAGGGGGACCCTTGC-----CTTCTTTGTGTTTAAGATTAG-CAAACAAATAAACAAATAAACAGAACTGTGTTGCTAGCTgggatgcagctcaggga--tagggcacttgcctaagatgcacaggtcctggactccatccccact--actgccaaTCAACAAAAGCGCCCCCTCTGTGATCAAAAGGTTTACTAGGGC-CTGCCTTCTTACAACAGTT---------TGCCACCTGGAAGTTTTCT----GT s rn5.chr9 29204133 241 - 121549591 GGAAAGGGGGCCCTTGTCTTCTTCTTCTTTGTGTTTAAGACAAAACAAACACAGAAACAAACAAGCAGGACTTTACTCTTAGCTgggatgtagctcagcaa--tagggcacttgcctatgatgcacaggtcctgggctccatccccCCCCCACTGCCAATCCCTC---CCAACCCCTCCGTGATTGCAAGATTTACTAGGGC-TTGCCTTCTTACAACAGTT---------TGTCACCAGGAAGTTCTCTTCCTGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318766 181 + 10418462 -----------tttttttttttttttttttttGCCAAATTTCAA-TGGGAGTAGAAGCATTGAA-------TGTGCCACTGTCACAAATGAAGCTGGAGAAAGTAGTG-------CCATGTTG-------CCTTGTCT-------------TTTAAAAATCTCCA-------------GGTGACTG-GGTCTTTGTTAGTAC-CTCCCTATTGTCAA--------------GGTCATCTGCAGATTTTCTGCCTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116439 131 - 243199373 ATGAAGTTGG------------------------------------AAAAGTGGAA-----------------------------------------------T-----------CCATGTTT-----GTTCT-GTTT-------------GTTAAAAACTGTCA------------AGTTGATTGAATGTTTTGTTAGTGCTTTTCCTTTTCTTGACAATTTGTCAAGAATGTCATTTGTAAACTTTCTTCCCAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055179 131 - 247518478 ATGAAGTTGG------------------------------------AAAAGTGGAA-----------------------------------------------T-----------CCATGTTT-----GTTCT-GTTT-------------GTTAAAAACTCTCA------------AGTTGATTGAATGTTTTGTTAGTGCTTTTCCTTTTCTTGACAATTTGTCAAGAATGTCATTTGTAAACTTTCTTCCCAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12216999 131 - 131632457 ATGAAGTTGG------------------------------------AAAAGTGGAA-----------------------------------------------T-----------CCATGTTT-----GTTCT-GTTT-------------GTTAAAAACTCTCA------------AGTTGATTGAATGTTTTGTTAGTGCTTTTCCTTTTCTTGACAATTTGTCAAGAATGTCATTTGTAAACTTTCTTCCCAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839203 131 - 6458163 ATGAAGTTGG------------------------------------AAAAGTGGAA-----------------------------------------------T-----------CCATGTTT-----GTTCT-GTTT-------------GTTAAAAACTCTCA------------AGTTGATTGAATGTTTTGTTAGCGCTTTTCCTTTTCTTGACAATTTGTCAAGAATGTCATTTGCAAACTTTCTTCCCAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810291 131 - 106825570 ATGAAGTTGG------------------------------------AAAAATGGAA-----------------------------------------------T-----------CCACGTTT-----GTTCT-GTTT-------------GTTAAAAATCCTCA------------AGTTGATTGAATGTTTTGTGAGTGCTTTTCCTTTTCTTGACAATTTGTCAAGAATGTCATTTATAAATTTTCTTCCCAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717241 131 - 158406734 ATGAAGTTGG-----------------------------------AAAAAATGGAA-----------------------------------------------T-----------CCATGTTT-----GTTTT-GTTT-------------TTTAAAAAATCTCA------------AGTCCATTGACTGTTTTGTTAGTGA-CTTCCTTTTCTTGACAACTTGTCAAGAATGTCATTTGTAAATTTTCTGCCCAT i calJac3.chr6 C 0 C 0 s equCab2.chr6 66901170 120 - 84719076 GAAAAATGGGGTCCCTGTTTGTTTTATTTGTT--------------AAAAAATCAC-----------------------------------------------T-----------AGGTGATT-----GAATT-TTTT-------------GTTAGCACTTTCTT---------------TTTTTG-GCAATTTGCCAAGAATGT-----------------------------CATCTGTAAATTTCCTACCTAT i equCab2.chr6 I 5 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29878 363 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059304 132 - 221441202 I e choHof1.scaffold_22666 14203 2585 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3402.000000 s mm10.chr1_GL456221_random 70166 2 + 206961 -TA s rn5.chr9 29204374 2 - 121549591 -TA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318947 2 + 10418462 -TA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116570 2 - 243199373 -TA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055310 2 - 247518478 -TA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217130 2 - 131632457 -TA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839334 2 - 6458163 -TA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810422 2 - 106825570 -TG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717372 2 - 158406734 -TA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66901290 2 - 84719076 -TA i equCab2.chr6 C 0 C 0 s choHof1.scaffold_22666 16788 2 - 17749 ct- i choHof1.scaffold_22666 I 2585 I 250 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29878 363 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059304 132 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-4438.000000 s mm10.chr1_GL456221_random 70168 11 + 206961 TACTCTCGCTG s rn5.chr9 29204376 10 - 121549591 TAA-CTGACTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318949 7 + 10418462 CAATTTG---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116572 9 - 243199373 TAACCTA--TT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055312 9 - 247518478 TAACCTA--TT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217132 9 - 131632457 TAACCTA--TT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839336 9 - 6458163 TAACCTA--CT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810424 9 - 106825570 GAACTTA--TT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717374 9 - 158406734 TAACCTA--AT i calJac3.chr6 C 0 C 0 s equCab2.chr6 66901292 7 - 84719076 CAATATT---- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29878 363 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059304 132 - 221441202 I e choHof1.scaffold_22666 16790 250 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=5171.000000 s mm10.chr1_GL456221_random 70179 2 + 206961 GT s rn5.chr9 29204386 2 - 121549591 GT i rn5.chr9 C 0 C 0 s hg19.chr2 12116581 2 - 243199373 GA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055321 2 - 247518478 GA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217141 2 - 131632457 GA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839345 2 - 6458163 GA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810433 2 - 106825570 GA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717383 2 - 158406734 GA i calJac3.chr6 C 0 C 0 s felCat5.chrC1 9059436 2 - 221441202 GA i felCat5.chrC1 I 132 I 5932 s equCab2.chr6 66901299 2 - 84719076 GA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6318956 0 + 10418462 C e turTru2.JH490333 29878 363 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e choHof1.scaffold_22666 16790 250 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=162460.000000 s mm10.chr1_GL456221_random 70181 97 + 206961 TATTTTCTCATGATCCGGAAGCAGTCGATTTT------------TAGAAACATTCCATAAGAAGACCCAGGTCCATC--CTGAAGAATGAAATGGGGTCA--TAAAACCAAGC s rn5.chr9 29204388 97 - 121549591 TATTTTCTCATGGTCTGGAAGCAGTCGATTTT------------TATAAACAGCCCATAAGAAGACACAGGTCTGAC--CCAAAGAATGAAATGGGGTCA--TAAAACCAAGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6318956 104 + 10418462 TATTTTC-CATGATTCATAAACAGTCAGTTTT--GTACTTGTCACGTAGGCACGGCACAAGG-----CAGGTGTGTCTGTTGTAAGACGCAA-GTGGTCAGGTGAAATAAACC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116583 101 - 243199373 TATCTCCTCACAGTCCATAAATGGCCAATCTTTAATACATGCTGCATGGGCATGGGAAAAGG---CGCATGT-------CTGAGACATGAAATGGTTGCA--GTGAACAAGTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055323 101 - 247518478 TATCTCCTCACAGTCCATAAATGGCCAATCTTTAATACATGCTGCATGGGCATGGGAAAAGG---CACATGT-------CTGAGACATGAAATGGTTGCA--GTGAACTAGTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217143 101 - 131632457 TATCTCCTCACAGTCCATAAATGGCCAATCTTTAATACATGCTGCATGGGCATGGGAAAAGG---AACATGT-------CTGAGACATGAAATGGTTACA--GTGAACAAGTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839347 101 - 6458163 TATCTCCTCATGGTCCATAAATGGCCAATCTTTAATACATGCTGCATGGGCATGGGAAAAGG---CACATGT-------CTGAGATATGAAATGGTTGCA--CTGAACAAGTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810435 101 - 106825570 TATCTCCTCATGGTCCATAAATGGCCAATCTTTAATAAATGCTGCATGGTCATGGGAAAAGG---CACACGT-------CTGAGACATGAAATGGTGGCA--CTGAACATGTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717385 99 - 158406734 TATCTTCTCAT-GTCCATAAATGGCCAATCTTTAATAAACGTTGCATGGGCTTGGG-AAAGG---CATATGT-------CTGAGATGCGAAATGTTTGCA--TTGAACAAGTC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66901301 105 - 84719076 TATTTTCTCATGGCCTATCAATGGTCAATTTTT-ATGAATGTTGCATGGGCATGAGAAAAAG---CACATGTCTCTT--CTGAAATATAAAATTGATACA--TAAAATAAATC i equCab2.chr6 C 0 I 6 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 29878 363 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 16790 250 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=11903.000000 s mm10.chr1_GL456221_random 70278 5 + 206961 GCTGA s rn5.chr9 29204485 5 - 121549591 GGTGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319060 5 + 10418462 ACTGA i speTri2.JH393335 C 0 I 7 s hg19.chr2 12116684 5 - 243199373 AGTTA i hg19.chr2 C 0 I 5 s panTro4.chr2B 12055424 5 - 247518478 AGTTA i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 12217244 5 - 131632457 AGTTA i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 2839448 5 - 6458163 AGTTA i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 12810536 5 - 106825570 AGTTA i rheMac3.chr12 C 0 I 5 s calJac3.chr6 11717484 5 - 158406734 AGTTA i calJac3.chr6 C 0 I 5 s turTru2.JH490333 30241 5 + 53618 agtca i turTru2.JH490333 I 363 I 181 s equCab2.chr6 66901412 4 - 84719076 -GTCA i equCab2.chr6 I 6 I 1 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 16790 250 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=140975.000000 s mm10.chr1_GL456221_random 70283 66 + 206961 CTT--TGACCAATCCTATTTTTCATATCCTTCCTGATTTTATTCA-TGTGTTGTCTGCT--TGCGTCAAAG s rn5.chr9 29204490 64 - 121549591 CTT--TGACCAATCCTAATTTTCATGTCCTTCCTGATTCTATT---TGTGTTATCTGCT--TACCTCAAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319072 64 + 10418462 CTTGCTGATCAGTC-----TTTCACATCCTTCATGGTTTTATTTATTTTTTCATCTGCT--TATGTCAAAA i speTri2.JH393335 I 7 C 0 s hg19.chr2 12116694 66 - 243199373 CTT--TTACTAAGTATGCCTTTCTCAGCCCTCATGCTTTTATTTA-TGCTTGGCCCATT--TGTGTTGAAG i hg19.chr2 I 5 C 0 s panTro4.chr2B 12055434 66 - 247518478 CTT--TTACTAAGTATGCCTTTCTCAGCCCTCATGCTTTTATTTA-TGCTTGGCCCATT--TGTGTTGAAG i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 12217254 66 - 131632457 CTT--TGACTAAGTATGCCTTTCTCAGCCCTCATGCTTTTATTTA-TGCTTGGCCCATT--TGTGTTGAAG i gorGor3.chr2B I 5 C 0 s nomLeu2.GL397366 2839458 66 - 6458163 CTT--TTACTAAGTTTGCCTTTCTCAGCCCTCATGGTTTTATTTA-TGCTTGGCCCATT--TGTGTTGAAG i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 12810546 66 - 106825570 CTT--TTACTAAGTATGCCTTTCTCAGCCCTCATGCTTTTATTTA-TGCTTGGCCCATT--TGTGTTGAAG i rheMac3.chr12 I 5 C 0 s calJac3.chr6 11717494 64 - 158406734 CTT--TTACTAAGTATGC--TTCTCAGCCCTCATGCTTTTATTTA-TGCTTGGCCCATT--CGTGTTGAAG i calJac3.chr6 I 5 C 0 s equCab2.chr6 66901417 67 - 84719076 -CT--TTGCCAATCATGTCTTTCACATTCTTGCTGTCTTTATTTA-TGTTTGGCCTATTTATGTGTCGAAG i equCab2.chr6 I 1 I 483 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30246 181 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 16790 250 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=596.000000 s mm10.chr1_GL456221_random 70349 2 + 206961 TG s rn5.chr9 29204554 2 - 121549591 TG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319136 2 + 10418462 CG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116760 1 - 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055500 1 - 247518478 -A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217320 1 - 131632457 -A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839524 1 - 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810612 1 - 106825570 -A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717558 1 - 158406734 -A i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30246 181 + 53618 I e equCab2.chr6 66901484 483 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 16790 250 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=67807.000000 s mm10.chr1_GL456221_random 70351 32 + 206961 TTATGAGTGATTTT----------TCAGTG-------TC--TAAATATTAC s rn5.chr9 29204556 32 - 121549591 CTGTGAGTGATTCT----------TCAGTG-------TC--TAAATATTAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319138 34 + 10418462 TTGGGAGCTGCTTA----------TTAGAA-------TTCGTAAATACTAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116761 34 - 243199373 TTGGGAGTGGTTCG----------TTAAAG-------TTTCCAAATATTAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055501 34 - 247518478 TTGGGAGTGGTTCG----------TTAAAG-------TTTCCAAATATTAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217321 34 - 131632457 TTGGGAGTGGTTCG----------TTAAAG-------TTTCCAAATATTAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839525 34 - 6458163 TTGGGAGTGGTTTG----------TTAAAG-------TTTCTAAATATTAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810613 34 - 106825570 TTGGGAGTGGTTTA----------TTAAAG-------TTTCTAAATATTAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717559 51 - 158406734 TTGGGAGTGGTTTAAATGATATTCATAGAGGAAACACTCTATAAATATCAC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66901967 34 - 84719076 TTGTAGGTGGCTTA----------TTAAAA-------TTACTAAGTATTAT i equCab2.chr6 I 483 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30246 181 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 16790 250 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=30356.000000 s mm10.chr1_GL456221_random 70383 11 + 206961 CAGCTTTCTAG s rn5.chr9 29204588 11 - 121549591 CAGGTTTCTAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319172 11 + 10418462 CAGGTTTCCAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116795 11 - 243199373 CAGGTTTCCAG i hg19.chr2 C 0 I 7 s panTro4.chr2B 12055535 11 - 247518478 CAGGTTTCCAG i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 12217355 11 - 131632457 CAGGTTTCCAG i gorGor3.chr2B C 0 I 7 s nomLeu2.GL397366 2839559 11 - 6458163 CGGGTTTCCAG i nomLeu2.GL397366 C 0 I 7 s rheMac3.chr12 12810647 11 - 106825570 CAGGTTTCCAG i rheMac3.chr12 C 0 I 7 s equCab2.chr6 66902001 11 - 84719076 CAGGTTTCCAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_12135 12615 2 - 44403 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30246 181 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11717610 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 16790 250 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=8595.000000 s mm10.chr1_GL456221_random 70394 2 + 206961 CT s rn5.chr9 29204599 2 - 121549591 CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319183 2 + 10418462 CT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116813 2 - 243199373 CT i hg19.chr2 I 7 C 0 s panTro4.chr2B 12055553 2 - 247518478 CT i panTro4.chr2B I 7 C 0 s gorGor3.chr2B 12217373 2 - 131632457 CT i gorGor3.chr2B I 7 C 0 s nomLeu2.GL397366 2839577 2 - 6458163 CT i nomLeu2.GL397366 I 7 C 0 s rheMac3.chr12 12810665 2 - 106825570 CT i rheMac3.chr12 I 7 C 0 s equCab2.chr6 66902012 2 - 84719076 CT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_24822 2049 2 - 7207 CT i pteVam1.scaffold_24822 n 2 n 2 e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30246 181 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11717610 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 16790 250 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-65.000000 s mm10.chr1_GL456221_random 70396 3 + 206961 ---CTG s rn5.chr9 29204601 3 - 121549591 ---CCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319185 3 + 10418462 ---ACC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116815 3 - 243199373 ---ACC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055555 3 - 247518478 ---ACC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217375 3 - 131632457 ---ACC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839579 3 - 6458163 ---ACC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810667 3 - 106825570 ---ACC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66902014 6 - 84719076 TTTTAC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30246 181 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11717610 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 16790 250 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1303.000000 s mm10.chr1_GL456221_random 70399 6 + 206961 -CATGT-T s rn5.chr9 29204604 6 - 121549591 -CATGT-C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319188 7 + 10418462 -CATTTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116818 7 - 243199373 -CATTTTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055558 7 - 247518478 -CATTTTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217378 7 - 131632457 -CATTTTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839582 7 - 6458163 -CATTTTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810670 7 - 106825570 -CATTTTA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66902020 7 - 84719076 -CGTTTTT i equCab2.chr6 C 0 C 0 s choHof1.scaffold_22666 17040 2 - 17749 CC------ i choHof1.scaffold_22666 I 250 I 26 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30246 181 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11717610 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=60875.000000 s mm10.chr1_GL456221_random 70405 26 + 206961 GGGTGGTCTCTTTCTCATGAGCATTG s rn5.chr9 29204610 26 - 121549591 AGGTGGTCCCTTTCCCGTAAGCATTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319195 26 + 10418462 AAGTGGTCCCTGTTCCCTGAGCTTGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116825 26 - 243199373 GGGTGGTCCCTGTTGCATGAGCATTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055565 26 - 247518478 GGGTGGTCCCTGTTGCATGAGCATTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217385 26 - 131632457 GGGTGGTCCCTGTTGCATGAGCATTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839589 26 - 6458163 GGGTGGTCCCTGTTGCATGAGCATTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810677 26 - 106825570 GGGTGGTCCCTGTTGCATGAGCATTG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66902027 26 - 84719076 AGGTTGTCCCTTTTTCACTAGCTATG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30246 181 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11717610 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17042 26 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=5413.000000 s mm10.chr1_GL456221_random 70431 8 + 206961 GTATGAGA s rn5.chr9 29204636 8 - 121549591 GCACTAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319221 8 + 10418462 CTGGTTGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116851 8 - 243199373 CTAGTTAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055591 8 - 247518478 CTAGTTAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217411 8 - 131632457 CTAGTTAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839615 8 - 6458163 CTAGTTAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810703 8 - 106825570 CTAGTTAA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66902053 8 - 84719076 CTAGTTTC i equCab2.chr6 C 0 C 0 s choHof1.scaffold_22666 17068 5 - 17749 TTAGC--- i choHof1.scaffold_22666 I 26 I 370 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30246 181 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11717610 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2526.000000 s mm10.chr1_GL456221_random 70439 24 + 206961 TCGTGCTCTGCTACACTGCAG-GTG-------- s rn5.chr9 29204644 24 - 121549591 T-GTGCTCAGCCACACTGCAAAGTG-------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319229 15 + 10418462 C-G-GCTCAG----GCTGGAG------------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116859 15 - 243199373 T-G-GCTTCA----GCCGTAG------------ i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055599 15 - 247518478 T-G-GCTTCA----GCTGCAG------------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217419 15 - 131632457 T-G-GCTTCA----GCTGCAG------------ i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839623 15 - 6458163 T-G-GCTTCA----GCTGCAG------------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810711 15 - 106825570 T-G-GCTTCA----GCTACAG------------ i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66902061 23 - 84719076 T-G-CCTTAA----CCTGCAG----TCCAGGCA i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30246 181 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11717610 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17073 370 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-1217.000000 s mm10.chr1_GL456221_random 70463 8 + 206961 ATCGGTTC s rn5.chr9 29204668 8 - 121549591 ATCTGTTC i rn5.chr9 C 0 C 0 s turTru2.JH490333 30427 3 + 53618 GTC----- i turTru2.JH490333 I 181 I 41 s equCab2.chr6 66902085 7 - 84719076 GCTTGTT- i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6319244 0 + 10418462 C e rheMac3.chr12 12810726 0 - 106825570 C e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2839638 0 - 6458163 C e gorGor3.chr2B 12217434 0 - 131632457 C e panTro4.chr2B 12055614 0 - 247518478 C e hg19.chr2 12116874 0 - 243199373 C e calJac3.chr6 11717610 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17073 370 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=30374.000000 s mm10.chr1_GL456221_random 70471 42 + 206961 TAAGCCAGCTCATATATATTCAAC-TCTCTCTATACATACACT------ s rn5.chr9 29204676 41 - 121549591 TAACCCAGGTCATCTATTCTCAAC-TCTCTCTATATAGACTC------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319244 32 + 10418462 ---CCCAGGCCATCCAGTTTAACC-CAGCTCCGTGT------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116874 32 - 243199373 ---CCCAGGTCATCTTGTTTAACC-CAGATcagtgt------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055614 32 - 247518478 ---CCCAGGTCATCTTGTTTAATC-CAGATcagtgt------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217434 32 - 131632457 ---CCCAGGTCATCTTGTTTAACC-CAGATcagtgt------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839638 32 - 6458163 ---CCCAGGTCATCTTGTTTAATC-CAGATCAGTGT------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810726 32 - 106825570 ---CCCAGGTCATCTTGTTTAACC-CAGATcaatgt------------- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66902092 38 - 84719076 TACCTCAGTTCA----ATATAGCCGCAGACCACAGC-------ACTTAC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30430 41 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11717610 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17073 370 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=11686.000000 s mm10.chr1_GL456221_random 70513 9 + 206961 CTGGCTGTG s rn5.chr9 29204717 7 - 121549591 --AACTGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319276 7 + 10418462 --GGCTGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116906 7 - 243199373 --ggccata i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055646 7 - 247518478 --ggccata i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217466 7 - 131632457 --ggccata i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839670 7 - 6458163 --GGCCATA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810758 7 - 106825570 --ggccatg i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 30471 3 + 53618 ------ata i turTru2.JH490333 I 41 I 643 s equCab2.chr6 66902130 7 - 84719076 --GGCTATA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11717610 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17073 370 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=215987.000000 s mm10.chr1_GL456221_random 70522 195 + 206961 GCCAAGCACTTTCTCA--ACTGTAAACCAGCATctagaatgtcaaga-ttcaattagtactcag-----ccccctccagattgtataatctagcaagaggatcgcttacctcacccctgtctgcattagagctcaccacagt-taggtagttgtgatgacagtgaccaccttgcaatgc-tttgtgaa-ctccagtaagttactac s rn5.chr9 29204724 192 - 121549591 GCCAAGCACTTTCTCA--ATAGTAAACCAGCAACTAGAAAGTCAAG--TTCAATTGGTACTCAG-----CCCCCTCCACATTACATGATCCAGCATGAgggtcacttacctcacctctgtctgcattggagttctcca--gt-taggtagttgtgatgacagtggccatcttgcaacgc-ttcgtgaa-ctccaataagttactac i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319283 184 + 10418462 AGTACAGACCTAC-AA--CTCAGAAGCctgcagccagcaagctggga-tt------gttctcagttcttcccctgccaagctgcacaacccagggcgagg---------ttcatgagtttctgtgtcattgtgctcaacagc-taagtggatggaatcagagc-atcagcttgcagggg-tttgtgaagatccaagaagctactgc i speTri2.JH393335 C 0 C 0 s hg19.chr2 12116913 183 - 243199373 g---aacacatagttagcactgtaagcctggaatcaggat--------tt------gctcccagctcttccactctctagttgtgcaaccctggggcaag-----ttattaaacatttctgtgtctcagt-tcctcaacagtataaacaggtgcagtcataggaaccacctcgcaagggttttatgaaaatcagataagttactgc i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055653 183 - 247518478 g---aacacatagttagcactgtaagcctggaatcaggat--------tt------gctcccagctcttccactctctagttgtgcaaccctggggcaag-----ttattaaacctttctatgtctcagt-tcctcaacagtataaacaggtgcagtcataggaaccacctcgcaagggttttatgaaaatcagataagttactgc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217473 183 - 131632457 g---aacacatagttagcactgtaagcctggaatcaggat--------tt------gctcccagctcttccactctctagttgtgcaaccctggggcaag-----ttattaaacctttctatgtctcagt-tcctcaatagtataaacaggtgcagtcataggaaccacctcgcaagggttttatgaaaatcagataagttactgc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839677 184 - 6458163 G---AACACATAGTTAggactctaagcctagaatcaggat--------tt------gctcccagctcttccactctcgggttgtgcaaccctggggcaaa-----ttattaaacctttctatgtctcagtgtccacaacagtataaacaggtgtagtcataggaaccatttcacaagggttttatgaagatcagataagttactgc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810765 184 - 106825570 g---aacacatagttaggactctaagcctggaatcgggat--------tt------gctcccagctctttcactctcgagttgtgcaaccctggggcaag-----ttattaaacctttctatgtctcagtgtcctcaacagtgtaaacaggtgcagccataggagccatctcacaagggttttatgaagatcagataagttactgc i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66902137 178 - 84719076 --ACCAGGCTTACACAG-ACTGTAAGCCTGGAACCACAAAGTAAGAATTT------GTTCCC--ctctaccacttccaagttgtgcaac----------------ttattaaacctgtctaagtctcagtgtccttgacaacatacatgcatgcaatcatagt-accatcttgcaagggttttgtgaagatcaaataagttactgc i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11717610 0 - 158406734 C e vicPac1.scaffold_4435 108245 709 - 111236 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17073 370 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=109187.000000 s mm10.chr1_GL456221_random 70717 55 + 206961 ctatgaaatccttggaacaaaa--gctggacataggacatactcagtgaaGAAGAGA s rn5.chr9 29204916 55 - 121549591 ctatgatatccttggaacaaag--actgcacataggacatactcagtgaatAAGAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319467 45 + 10418462 gtatgaaacccttagaacaga---gtggtgcgcaggaaacacCTGGT---------C i speTri2.JH393335 C 0 C 0 s hg19.chr2 12117096 56 - 243199373 atatgaaacccttagaacaaag-tctggcacacaggaaacactccataaatattagc i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055836 56 - 247518478 atatgaaacccttagaacaaag-tctggcacacaggaaacactctataaatattagc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217656 56 - 131632457 atatgaaacccttagaacaaag-tctggcacacaggaaacactctataaatattagc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839861 56 - 6458163 atatgaaacccttagaagaaag-tctggcacacaggaaacactctatacatattagc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12810949 56 - 106825570 atatgaaacccttagaacaaag-tctggcacacaggaaacactctataaatattagc i rheMac3.chr12 C 0 C 0 s vicPac1.scaffold_4435 108954 57 - 111236 Ctgtgaaacccttggaacaaagacttggcagacagacagcccctaggaaatagtagc i vicPac1.scaffold_4435 I 709 C 0 s equCab2.chr6 66902315 56 - 84719076 atgt-aagcccatagaaaaaacatctggcacacaggaagcaatcaataaatatcagc i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11717610 0 - 158406734 C e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17073 370 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=134587.000000 s mm10.chr1_GL456221_random 70772 63 + 206961 TGTTTTAAAAACCCACTTTATGTT--TTAAAATCCCTTTCAGGATGGTTATATGATATTGTCTGT s rn5.chr9 29204971 62 - 121549591 TGTTTCCAAA-CCCACTTTAACTT--TTAAAATCCCTTTCAGGATGGTGGTGTGCTGTTGTCTGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319512 62 + 10418462 TGTGGTGA---TCCACCTCAAGTTCACGGGAGGCCCCTTGGGGATCTGGGCATCGTCGAGCCAGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12117152 64 - 243199373 tacttttAATACCTTCCTTATGTTTACCTGCAGCGCCTT-GGGATTCTGTCATTATATTTTCAGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055892 64 - 247518478 tacttttAATACCTTCCTTATGTTTACCTGCAGCACCTT-GGgattctgtcattatattttcagt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217712 64 - 131632457 tacttttAATACCTTCCTTATGTTTACCTGCAGCACCTT-GGGATTCTGTCATTATATTTTCAGT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839917 64 - 6458163 tacttttAATATCTTCCTTATGTTTACCTGCAGCGCCTT-GGgattctgtcattacattttcagt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12811005 64 - 106825570 tacttttAATATCTTCCTTATGTTTACCTGCAGCGCCTT-GGGATTCTGTCATTATATTTTCAGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717610 64 - 158406734 TACTTTTAATATCTGCCTTATGTTTACCTGCAGCCCCTT-GGGATTCTGTCATTATATTTTCAGT i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 109011 65 - 111236 tctattTAATAACTGCCTTAGGTTCACCAATAGCCCCTTTGGGATTTCAGCGTCATACTGTCAGT i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66902371 65 - 84719076 tcttttTAATATCTGCCTTATGTTTACCAGCAGCCCCCTTGGGATTTTTGCATCATAGTTTCGGT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17073 370 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-3642.000000 s mm10.chr1_GL456221_random 70835 1 + 206961 -A s rn5.chr9 29205033 1 - 121549591 -C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319574 1 + 10418462 -G i speTri2.JH393335 C 0 C 0 s hg19.chr2 12117216 1 - 243199373 -C i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055956 1 - 247518478 -c i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217776 1 - 131632457 -C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839981 1 - 6458163 -c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12811069 1 - 106825570 -C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717674 1 - 158406734 -C i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 109076 1 - 111236 -C i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66902436 1 - 84719076 -C i equCab2.chr6 C 0 C 0 s choHof1.scaffold_22666 17443 1 - 17749 A- i choHof1.scaffold_22666 I 370 I 144 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=253039.000000 s mm10.chr1_GL456221_random 70836 83 + 206961 CTTCTCAGCCACTGTGGTTGCTGGGCACTGCCTT-TATCTCCTCTACCAATGGATCTTTTAGCAAGACTTTGCTCTGTAGACAG s rn5.chr9 29205034 81 - 121549591 CCTCTCGGCT--TCTGGTTGCTGGGCACCACCTT-TATTTCCTCTACCAATGGGTCTTTTAGCAAGATTTTGTTCTGTAGACTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319575 83 + 10418462 CCTCTCAGCCTTTATTGTTGCTGGGCCCTGCCTTCTCCTCCCTATGTCTTTGAGTCTCTTAAGCAGACATTGCT-TGTGAACTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12117217 83 - 243199373 ACTCTCAGCCTCCATTGTTGCTGGGAATTGTCCT-TGTTTCCTATACCCATGAGCCTTTTAGGCAGACATTGCTTTGCAGGCTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12055957 83 - 247518478 actctcagcctccattgttgctgggaattgtcat-tgtttcctatacccatgagccttttaggcagacattgctttgcaggcta i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217777 83 - 131632457 ACTCTCAGCCTCCATTGTTGCTGGGAATTGTCAT-TGTTTCCTATACCCATGAGCCTTTTAGGCAGACATTGCTTTGCAGGCTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2839982 83 - 6458163 actctcagcctccattgttgctgggaattgtcat-tgtttcctatacccatgagccttttaggcagacattgctttgcaggcta i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12811070 82 - 106825570 ACTCTCAGCCTCCATTGTTGCTGGGAATTGTCAT-TGTTTCCTATACCCATGAGCCTTTTAGGCAGACATTGCTTTGCAGGTA- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11717675 83 - 158406734 ACTCTCAGCCTCCATCATTGCTAGGAATTGTCAT-TGTTTCCAATACCCATGAGGCTTTTAAGCTGACATTGCCTCGCAGGCTA i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 109077 83 - 111236 AATTTTAGCCTCTATTGTTGCTGGGTGCCGTCAC-TACTTCCTATACCCGCGAGTCTCTTCAGCAGGCATAGCTTTGCAGATGC i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66902437 82 - 84719076 TCTTTCAGCCTCCATTGTTGCT-GGTGTTGTCAT-TGCTTCCTATATCCATGAGTCTTTGAGGCAGACATTGCTTTGCAGACTG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 32751 1966 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17444 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=137316.000000 s mm10.chr1_GL456221_random 70919 35 + 206961 -CTAAGGGATGCT-TGAAGACTAGGGTGTCTACCTTT s rn5.chr9 29205115 35 - 121549591 -CTAAGGGATGCC-TGAAGACTAGAATGTCTACCTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319658 35 + 10418462 -CTAAGGGATGCCTTGGGGACCTGGATGTCTGTC-TT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12117300 35 - 243199373 -CTAA-GGATGCCTTTGGGACCAGAATGCTTACCTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12056040 35 - 247518478 -ctaa-ggatgcctttgggaccagaaTGCTTACCTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12217860 35 - 131632457 -CTAA-GGATGCCTTTGGGACCAGAATGCTTACCTTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2840065 35 - 6458163 -ctaa-ggatgcctttcggacaagaaTGCCTACCTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12811152 35 - 106825570 -CTAA-GGATGCCTTTGGGACCAGAATGCCTACCTTT i rheMac3.chr12 C 0 I 371 s papHam1.scaffold15394 34717 35 + 58077 -CTAA-GGATGCCTTTGGGACCAGAATGCCTACCTTT i papHam1.scaffold15394 I 1966 C 0 s calJac3.chr6 11717758 35 - 158406734 -CTAA-GGATGCCTTTGGGACCAGAATGCCTACCTTT i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 109160 36 - 111236 CCAAA-GGATGCCTTTGGGACCAGAATGCCTGTCTAC i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66902519 36 - 84719076 CTCAG-GGATGCCTCTGGGACAAGAATGCTTGTCTGT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17444 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=9508.000000 s mm10.chr1_GL456221_random 70954 8 + 206961 GAGAATCC s rn5.chr9 29205150 8 - 121549591 GAGAACCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319693 8 + 10418462 GTGTGCCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12117335 6 - 243199373 --AGATCT i hg19.chr2 C 0 I 4 s panTro4.chr2B 12056075 6 - 247518478 --AGATCT i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 12217895 6 - 131632457 --AAATCT i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 2840100 6 - 6458163 --AGATCT i nomLeu2.GL397366 C 0 I 131 s papHam1.scaffold15394 34752 6 + 58077 --AGATCT i papHam1.scaffold15394 C 0 I 4 s calJac3.chr6 11717793 6 - 158406734 --AGACCT i calJac3.chr6 C 0 I 4 s vicPac1.scaffold_4435 109196 8 - 111236 AGACGCCT i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66902555 8 - 84719076 GGATGCCC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e rheMac3.chr12 12811187 371 - 106825570 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17444 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=31078.000000 s mm10.chr1_GL456221_random 70962 11 + 206961 ATTTTATGCAG s rn5.chr9 29205158 11 - 121549591 ATTTTATGCAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319701 11 + 10418462 CTTTCATGCAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12117345 11 - 243199373 ATTTAATGCAG i hg19.chr2 I 4 C 0 s panTro4.chr2B 12056085 11 - 247518478 ATTTAATGCAG i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 12217905 11 - 131632457 ATTTAATGCAG i gorGor3.chr2B I 4 I 223 s nomLeu2.GL397366 2840237 11 - 6458163 atttttagtag i nomLeu2.GL397366 I 131 I 2 s papHam1.scaffold15394 34762 11 + 58077 ATTTAATGCAG i papHam1.scaffold15394 I 4 C 0 s calJac3.chr6 11717803 11 - 158406734 ATTTTATGCAG i calJac3.chr6 I 4 C 0 s vicPac1.scaffold_4435 109204 11 - 111236 ATGCAATGCAG i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66902563 11 - 84719076 AGTGAACACAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e rheMac3.chr12 12811187 371 - 106825570 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17444 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=12410.000000 s mm10.chr1_GL456221_random 70973 4 + 206961 AGAG s rn5.chr9 29205169 4 - 121549591 AGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319712 4 + 10418462 AGAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12117356 4 - 243199373 AGAG i hg19.chr2 C 0 I 1 s panTro4.chr2B 12056096 4 - 247518478 AGAG i panTro4.chr2B C 0 I 234 s gorGor3.chr2B 12218139 4 - 131632457 agag i gorGor3.chr2B I 223 I 4 s nomLeu2.GL397366 2840250 4 - 6458163 acag i nomLeu2.GL397366 I 2 C 0 s papHam1.scaffold15394 34773 4 + 58077 AGAG i papHam1.scaffold15394 C 0 C 0 s calJac3.chr6 11717814 4 - 158406734 AGAG i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 109215 4 - 111236 AGAC i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66902574 4 - 84719076 CGCG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e rheMac3.chr12 12811187 371 - 106825570 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17444 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-591.000000 s mm10.chr1_GL456221_random 70977 1 + 206961 C s rn5.chr9 29205173 1 - 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319716 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s papHam1.scaffold15394 34777 1 + 58077 A i papHam1.scaffold15394 C 0 C 0 s calJac3.chr6 11717818 1 - 158406734 A i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 109219 1 - 111236 T i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66902578 1 - 84719076 C i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e rheMac3.chr12 12811187 371 - 106825570 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2840254 0 - 6458163 C e gorGor3.chr2B 12218143 4 - 131632457 I e panTro4.chr2B 12056100 234 - 247518478 I e hg19.chr2 12117360 1 - 243199373 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17444 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-1144.000000 s mm10.chr1_GL456221_random 70978 3 + 206961 CAT-- s rn5.chr9 29205174 3 - 121549591 CAC-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319717 3 + 10418462 AGC-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12117361 3 - 243199373 AGC-- i hg19.chr2 I 1 C 0 s panTro4.chr2B 12056334 3 - 247518478 agt-- i panTro4.chr2B I 234 C 0 s gorGor3.chr2B 12218147 3 - 131632457 ggt-- i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 2840254 3 - 6458163 ggt-- i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold15394 34778 3 + 58077 AGC-- i papHam1.scaffold15394 C 0 C 0 s calJac3.chr6 11717819 3 - 158406734 AGC-- i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 109220 3 - 111236 GGC-- i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66902579 3 - 84719076 AGC-- i equCab2.chr6 C 0 C 0 s choHof1.scaffold_22666 17588 3 - 17749 --CAT i choHof1.scaffold_22666 I 144 n 144 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e rheMac3.chr12 12811187 371 - 106825570 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e felCat5.chrC1 9059438 5932 - 221441202 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-35242.000000 s mm10.chr1_GL456221_random 70981 29 + 206961 TCC-CC-ATGTTCCTGAGAAC-------------------------------------------------------------------------------------TGTTGCCT--GT-- s rn5.chr9 29205177 32 - 121549591 TCC-CCCATGCTCCTGATACC-------------------------------------------------------------------------------------TTCTGCCTCTGT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319720 30 + 10418462 TCC-CC-GCACGCCTGGGAGG-------------------------------------------------------------------------------------TTTTCCCCC-GT-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12117364 28 - 243199373 TTC-CC-ACATTCCTCAAGGT--------------------------------------------------------------------------------------TTTGCTTCT---- i hg19.chr2 C 0 I 313 s panTro4.chr2B 12056337 27 - 247518478 ttcacc-atgttggtcagga----------------------------------------------------------------------------------------tggtctct---- i panTro4.chr2B C 0 I 83 s gorGor3.chr2B 12218150 115 - 131632457 ttcacc-atgttggccaggatagtctcaatctcttgacctcaggtgatccacccacctcggcctcccaaagtgccgggattacaggcatgagccaccgcacccagccTTTGCTTCT---- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2840257 47 - 6458163 ttcacc-atgttggccaggatggtctccatctcttgacctcaggtggt------------------------------------------------------------------------ i nomLeu2.GL397366 C 0 I 64 s papHam1.scaffold15394 34781 29 + 58077 TCC-CC-GCATTCCTCAAGGT-------------------------------------------------------------------------------------CTTTGCTTCT---- i papHam1.scaffold15394 C 0 I 3579 s calJac3.chr6 11717822 29 - 158406734 TCC-CC-ACACTCCTCAAGGT-------------------------------------------------------------------------------------CTTTGCTTGT---- i calJac3.chr6 C 0 I 316 s vicPac1.scaffold_4435 109223 31 - 111236 TCC-CC-CAACTCCTCAAAAT-------------------------------------------------------------------------------------CTTTGCTTCT--GT i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66902582 31 - 84719076 TCC-CC-AAGCTCCTCAGAGT-------------------------------------------------------------------------------------CTTTGCTTCC--TT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e rheMac3.chr12 12811187 371 - 106825570 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=550877.000000 s mm10.chr1_GL456221_random 71010 144 + 206961 CTTCTCAGCCTGCCTCTTTTTATAAGATGTTCACTCTGACCAAAGCCTTAGAAAAGGCTCTTCTCCAGCATTTCATATACATGAAGGTGAACATCGCCTATGCCATCAACAAGCCATTCCCCTTCTTCGAAGCGCTCCAGGACA s rn5.chr9 29205209 144 - 121549591 TTTCTCAGCCTGCCTCTTTTTATAGGATGTTCACCCTGACCAAGGCCTTGGAAAAGGCTCTTCTTCAGCATTTCATATACACGAAGCTGGACATCGCCTATGCCATCAACAAGCCGTTCCCCTTCTTTGAAGCACTCCGAGACA i rn5.chr9 C 0 I 2 s speTri2.JH393335 6319750 139 + 10418462 TTTCTCATTCTGCCTCTCTCCATAGGGTGATCACTGTGA-----GCCATGGAAAAGGCTCTTCTTCAGCATTTCATATGCCGGAAACTGGAGATTTCCTATGCCATACAAAAGCCATTTCCCTTCTTTGAAGGCCTCCGAGACA i speTri2.JH393335 C 0 I 2 s hg19.chr2 12117705 144 - 243199373 TTTTTTATCATGCCTCTTTCCATAGGATGTTCACCATGACAAGAGCCATGGAAGAGGCTCTTTTTCAGCACTTCATGCACCAGAAGCTGGGGATCGCCTATGCCATACACAAGCCATTTCCCTTCTTTGAAGGCCTCCTAGACA i hg19.chr2 I 313 I 2 s panTro4.chr2B 12056447 144 - 247518478 TTTTTTATCATGCCTCTTTCCATAGGATGTTCACCATGACAAGAGCCATGGAACAGGCTCTTTTTCAGCACTTCATGCACCAGAAGCTGGGGATCGCCTATGCCATACACAAGCCATTTCCCTTCTTTGAAGGCCTCCTAGACA i panTro4.chr2B I 83 I 2 s gorGor3.chr2B 12218266 144 - 131632457 TTTTTTATCATGCCTCTTTCCATAGGATGTTCACCATGACAAGAGCCATGGAAGAGGCTCTTTTTCAGCACTTCATGCACCAGAAGCTGGGGATCGCCTATGCCATACACAAGCCATTTCCCTTCTTTGAAGGCCTCCTAGACA i gorGor3.chr2B I 1 I 2 s nomLeu2.GL397366 2840368 144 - 6458163 TTTTGTATCACGCCTCTTTCCATAGGATGTTCACCATGACAAGAGCCATGGAAGAGGCTCTTTTTCAGCACTTCATGCACCAGAAGCTGGGGATCGCCTATGCCATACACAAGCCATTTCCCTTCTTTGAAAGCCTCCTAGACA i nomLeu2.GL397366 I 64 I 2 s rheMac3.chr12 12811558 144 - 106825570 TTTTTTATCATGCCTCTTTCCATAGGATGTTCACCATGACAAGAGCCATGGAAGAGGCTCTTTTTCAGCACTTCATGCACCAGAAGCTGGGGATCGCCTATGCCATACACAAGCCATTTCCCTTCTTTGAAGGACTCCTAGACA i rheMac3.chr12 I 371 I 2 s calJac3.chr6 11718167 144 - 158406734 TTTTTTATCATGCCTTTTTCCATAGGATGTTCACCATGACAAGAGCCATGGAAGAGGCTCTTTTTCAGCACTTCATGTACCAGAAGCTGAGGATCGCCTATGCCATACACAAGCCATTTCCCTTCTTTGAAGGCCTCCTAGACA i calJac3.chr6 I 316 I 2 s vicPac1.scaffold_4435 109254 143 - 111236 CTTCTTTTCGTGCCCCT-TCCACAGAAGATTCACCATGACCAGGGCCTTAGAAGAGGCTCTTCTCCAACACTCCATATGTCAGAAACCGGAGATCGCTTATGCCATAAACAAGCCCTTTCCCTTCCTCGAAGGCCTCCGAGACA i vicPac1.scaffold_4435 C 0 I 1471 s equCab2.chr6 66902613 143 - 84719076 TTTCTTCTCACGCCTCT-TCCATAGGATGTTCACCATGACCAGGGCCTTAGAAGAGGCTCTCCTCCAGCACTTCATATGTCAGAAGCTGCAGATTTCTTATGCCATAGATAAGGCATTTCCCTTCTTCGAAGGCCTCCGAGACA i equCab2.chr6 C 0 I 2 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=123729.000000 s mm10.chr1_GL456221_random 71154 41 + 206961 TCTTTCATCACTGAGAGAATGTACAAGGTGAGG-CTGTGGAC s rn5.chr9 29205355 42 - 121549591 TCCTTCATCACTGAGCGAATGTACAAGGTGAGGCCTGTGGGC i rn5.chr9 I 2 C 0 s speTri2.JH393335 6319891 42 + 10418462 TCCTTCATCACTGAGAAAATGTACAAGGTGAGTGGTGTGGAC i speTri2.JH393335 I 2 C 0 s hg19.chr2 12117851 42 - 243199373 TCCATCATCACTAAGAGAATGTACATGGTGAGTCATGTTGAA i hg19.chr2 I 2 C 0 s panTro4.chr2B 12056593 42 - 247518478 TCCATCATCACTAAGAGAATGTACCTGGTGAGTCACGTTGAA i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 12218412 42 - 131632457 TCCATCATCACTAAGAGAATGTACATGGTGAGTCATGTTGAA i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 2840514 42 - 6458163 TCCATCATCACTAACAGAATGTACATGGTGAGTCATGTTGAA i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 12811704 42 - 106825570 TCCATCATCACTAAGACAATGTACATGGTGAGTCATGTTGAA i rheMac3.chr12 I 2 C 0 s calJac3.chr6 11718313 42 - 158406734 TCCTTCATCACTCAGAGAATGTACATGGTGAGTCCTGTTGGA i calJac3.chr6 I 2 C 0 s equCab2.chr6 66902758 42 - 84719076 TCCTTCATCACCGAGAGAATGTACAGGGTGAGTCATGCTGAT i equCab2.chr6 I 2 I 2 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 30474 643 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=5500.000000 s mm10.chr1_GL456221_random 71195 1 + 206961 C s rn5.chr9 29205397 1 - 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319933 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 12117893 1 - 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 12056635 1 - 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12218454 1 - 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2840556 1 - 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12811746 1 - 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11718355 1 - 158406734 C i calJac3.chr6 C 0 C 0 s turTru2.JH490333 31117 1 + 53618 C i turTru2.JH490333 I 643 I 172 s equCab2.chr6 66902802 1 - 84719076 C i equCab2.chr6 I 2 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=341145.000000 s mm10.chr1_GL456221_random 71196 148 + 206961 CTCCACAAAGCTGTCTAGTCCTCATTAAGTATGTTTCAGTATTGAGATCTCTGACCACAACCCATCAGTGTTTCTAGAACATGGAAGGCCCAAC-------TTGACCATGATCATTATTGCAGGAAGGGA----GGTTGG----GAGAAAGGGTGTCTT-------GAGG s rn5.chr9 29205398 148 - 121549591 CTCCACAAAGCAGCCCAGTCCTCATTACATGTGTTCCAGTATTGAGATCTCTGACCACAACCCACCAGGGCTCCTAGAACATGGAAGGCCCAA--------TTGACCATGATCATTATTGCAGAAAGAGA---TGGTTGG----GAGAAAGGGTGTCTT-------GGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6319934 147 + 10418462 TTCCCCTTGGCAGCCCAGCCCCCACCGAGTGTACCCTGTAAC--AGATCTCACACCACCAACCACCAGGGCCTCTGGGGTGTGGGAGGCCCAGCAAACACGTCGTACCTGATC------GCAGGATGCGC----GGTTGG----AAGACAGGGTGTCCT-------GGGG i speTri2.JH393335 C 0 I 934 s hg19.chr2 12117894 151 - 243199373 CCTTCCATGGCAGCCCAGCCCCCACCAA-TATGCCTGATTATTAAAGTCTCAAACCACAAACCACCAGGGCTTCCAGAGTTTGGAAGGCCCAGC-------CCAGGCATGTTCATTATCACAGAAGGTGGGGGTAGTTAG----GAGAGAGGGTGTCAT-------AGGG i hg19.chr2 C 0 I 1 s panTro4.chr2B 12056636 151 - 247518478 CCTTCCATGGCAGCCCAGCCCCCACCAA-TATGCCTGATTATTAAAGTCTCAAACCACAAACCACCAGGGCTTCCAGAGTTTGGAAGGCCCAGC-------CCAGGCATGTTCATTATCACAGAAGGTGGGGGTGGTTAG----GAGAGAGGGTGTCAT-------AGGG i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12218455 151 - 131632457 CCTTCCATGGCAGCCCAGCCCCCACCAA-TATGCCTGATTAGTAAAGTCTCAAACCACAAACCACCAGGGCTTCCAGAGTTTGGAAGGCCCAGC-------CCAGGCATGTTCATTATCACAGAAGGTGGGGGTGGTTAG----GAGAGAGGGTGTCAT-------AGGG i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2840557 152 - 6458163 CCTTCCATGGCAACTCAGCCCCCACTAAGTATGCCTGATTAGTAAGGTCTCGAACCACAAACCACCACGGCTTCCAGAGTTTGGAAGGCCCAGC-------CCAGGCATGTTCATCATCACAGAAGGTGGGGATGGTTAG----GAGAGAGGGTGTCAT-------AGGG i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12811747 152 - 106825570 CCTTCCATGGCAGCCCAGCCCCCACCAAATATGCCTGATTATTAAGATCTCAAACCACAAACCACCAGGGCTTCCAGAGTTTGGAAGGCCCAGC-------CCGGGTGTGTTCATTATCACAGAAGGTGGGGGCGGTTAG----GAGAGAGGGTGTCAT-------AGGG i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11718356 156 - 158406734 CCTTCCATGGGAGCCCAGCCCCCACCAAGTACACCCAATTATTGAGGTCTCAAACCACAAACCACCGGGGCCTCTAGAGTTTGGAAGGCCTAGC-------CTGGCCATGTTCATTATCTCAGAAGGTGGGGGTGATTAGGAGAGAGAGAGGGTGTCTT-------AGGG i calJac3.chr6 C 0 I 1 s equCab2.chr6 66902803 148 - 84719076 TTTGCCACGGCGGCCTAGCTCCCATCAAGAATGCCCAGTTATGGAAGTCT-----CACAAACC-CCAGGGCTTTTAGAGTTTGGAAGGCCCAGC-------CCAAA-ATGTTTATTATCAGAGAAAGAGG--ATGGCT------caaaccaggtggcttaatccaaagag i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 31118 172 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=18560.000000 s mm10.chr1_GL456221_random 71344 10 + 206961 CTGTATT-------AGT s rn5.chr9 29205546 10 - 121549591 CTGTGTT-------AGG i rn5.chr9 C 0 C 0 s hg19.chr2 12118046 10 - 243199373 CTATGTT-------GGT i hg19.chr2 I 1 I 1 s panTro4.chr2B 12056788 10 - 247518478 CTATGTT-------GGT i panTro4.chr2B I 1 I 1322 s gorGor3.chr2B 12218607 10 - 131632457 CTATATT-------GGT i gorGor3.chr2B I 1 I 1 s nomLeu2.GL397366 2840710 10 - 6458163 CTATATT-------GGT i nomLeu2.GL397366 I 1 I 1 s rheMac3.chr12 12811900 10 - 106825570 Ctgtatt-------ggt i rheMac3.chr12 I 1 I 1 s calJac3.chr6 11718513 10 - 158406734 Ctatatt-------ggt i calJac3.chr6 I 1 I 1 s equCab2.chr6 66902951 17 - 84719076 atgtattctctcacagt i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31118 172 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=7185.000000 s mm10.chr1_GL456221_random 71354 10 + 206961 GATAGGGTAT---------------- s rn5.chr9 29205556 10 - 121549591 GACAGGGTAT---------------- i rn5.chr9 C 0 C 0 s hg19.chr2 12118057 10 - 243199373 TCTAGGGTGT---------------- i hg19.chr2 I 1 I 1 s gorGor3.chr2B 12218618 10 - 131632457 TCTAGGGTGT---------------- i gorGor3.chr2B I 1 I 1 s nomLeu2.GL397366 2840721 10 - 6458163 TCTAGGGTGT---------------- i nomLeu2.GL397366 I 1 I 1 s rheMac3.chr12 12811911 10 - 106825570 tctagggtgt---------------- i rheMac3.chr12 I 1 I 1 s calJac3.chr6 11718524 10 - 158406734 tctagtgtgt---------------- i calJac3.chr6 I 1 I 1 s equCab2.chr6 66902968 26 - 84719076 tctgggggccaaaagtccaaaatcaa i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31118 172 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-2772.000000 s mm10.chr1_GL456221_random 71364 2 + 206961 -AT s rn5.chr9 29205566 2 - 121549591 -AT i rn5.chr9 C 0 C 0 s hg19.chr2 12118068 2 - 243199373 -AT i hg19.chr2 I 1 C 0 s gorGor3.chr2B 12218629 2 - 131632457 -AT i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2840732 2 - 6458163 -AT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12811922 2 - 106825570 -at i rheMac3.chr12 I 1 I 9 s calJac3.chr6 11718535 2 - 158406734 -at i calJac3.chr6 I 1 C 0 s turTru2.JH490333 31290 1 + 53618 -g- i turTru2.JH490333 I 172 I 514 s equCab2.chr6 66902994 2 - 84719076 ag- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-21665.000000 s mm10.chr1_GL456221_random 71366 14 + 206961 -------------TGTAGGT-----------------------------------------------------GCTGTAA- s rn5.chr9 29205568 14 - 121549591 -------------TGTAGGT-----------------------------------------------------GCTAGAG- i rn5.chr9 C 0 C 0 s hg19.chr2 12118070 14 - 243199373 -------------Aaggact-----------------------------------------------------gctgtaa- i hg19.chr2 C 0 I 1327 s gorGor3.chr2B 12218631 14 - 131632457 -------------Aaggact-----------------------------------------------------gctgtaa- i gorGor3.chr2B C 0 I 106 s nomLeu2.GL397366 2840734 14 - 6458163 -------------Aaggact-----------------------------------------------------gctgtaa- i nomLeu2.GL397366 C 0 I 106 s rheMac3.chr12 12811933 55 - 106825570 -------------aatgactac-----aaactaggt-------agcttaaaacaacagaaatatattctctcagttgtgg- i rheMac3.chr12 I 9 I 50 s calJac3.chr6 11718537 60 - 158406734 -------------aaaaactgctgtgacaaccaggtggctgaaaa-------caacagaaatacattctctcagttgtgg- i calJac3.chr6 C 0 I 50 s equCab2.chr6 66902996 28 - 84719076 tgttggtaaggttgattact-----------------------------------------------------tctagaaa i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31291 514 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=61321.000000 s mm10.chr1_GL456221_random 71380 74 + 206961 GTTCAAAGATGGATCTGTTTCTTGCCTCTGT-TTAGCTTCTGGTGG---CTGGAAGCTCTTGGAGTTCTTAGATTAAT- s rn5.chr9 29205582 77 - 121549591 GTTCagagatggatatgtttcttgcctctgt-ttagcttctggtggctcctgaaagctcctggagttcttagactaat- i rn5.chr9 C 0 C 0 s gorGor3.chr2B 12218751 69 - 131632457 gccctgaggagaatccgatacctgcctatctcctagcttctggtggctgttggaaatccttagtgtgat---------- i gorGor3.chr2B I 106 I 379 s nomLeu2.GL397366 2840854 78 - 6458163 gccctgaggagaatccgatccctgcctatctcctagcttctggtggctgttggaaatccttggtgttccttgccttgt- i nomLeu2.GL397366 I 106 C 0 s rheMac3.chr12 12812038 78 - 106825570 gccctaaggagaatccgatccctgcctatctcctagcttctggtggctgctggaaatccttggtgttccttgccttgt- i rheMac3.chr12 I 50 C 0 s calJac3.chr6 11718647 77 - 158406734 gtcttgaggagaatttgatccct-cctatcccctagcttctggtggctgctgaaaatccctggtgttccttgccttat- i calJac3.chr6 I 50 C 0 s equCab2.chr6 66903024 78 - 84719076 ctctgagggagaatcaattccctgacttttccctacctcctactgg-tgctggcaatccttggtatccttggcttatag i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31291 514 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=536.000000 s mm10.chr1_GL456221_random 71454 4 + 206961 AGTC s rn5.chr9 29205659 4 - 121549591 agtc i rn5.chr9 C 0 I 1774 s nomLeu2.GL397366 2840932 4 - 6458163 agac i nomLeu2.GL397366 C 0 I 364 s rheMac3.chr12 12812116 2 - 106825570 ag-- i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11718724 4 - 158406734 agac i calJac3.chr6 C 0 I 4 s equCab2.chr6 66903102 4 - 84719076 aaac i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31291 514 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e gorGor3.chr2B 12218820 379 - 131632457 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1088.000000 s mm10.chr1_GL456221_random 71458 16 + 206961 TGCACTGCACTCACTG s rheMac3.chr12 12812119 10 - 106825570 caca------tcactc i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11718732 10 - 158406734 tgca------tcactg i calJac3.chr6 I 4 C 0 s equCab2.chr6 66903106 16 - 84719076 atcacttcagtcactg i equCab2.chr6 C 0 I 1131 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31291 514 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2840936 364 - 6458163 I e gorGor3.chr2B 12218820 379 - 131632457 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=9749.000000 s mm10.chr1_GL456221_random 71474 180 + 206961 ca--ctgaccccaactccctgactcagctccactg------cactgcactcaactgagtgac---tgaactcagag---acctga------atgactctgtctcctgagtgctag-gattaaa-------agcaagtactgccaagcc------tggacctaagcttttctttacaag-------caactttctctgtcccaagctgg----ccttcaactcaga s rheMac3.chr12 12812129 221 - 106825570 taatctgttttcatctctacatcacctctcttttgagtcttcaacctaatcttctgag-gacacttggatttagggtcaccctaatcaaagatgattttatctcaa-atcaaagatgaaaatatctcaaaaattacaactgcaaagacactttttccaagtaagttcgcattcacaggttctggATGGCTATATCTTGGCTGAGAGGGGCACCATTCAATTCA-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11718742 223 - 158406734 taatctgtgtccatctctacatcacctctcttttgagtcttctacctaatctcctgag-gacacttggatttagggtcaccctgaatgaagatgattttgtctcaagatccttga-gacaaaatccggttaattacaactgcaaagacactttttccagataagttcacattcacaggttctagatccatatatcttggccgaggcgggcaccattcaactcaca i calJac3.chr6 C 0 I 154 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31291 514 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2840936 364 - 6458163 I e gorGor3.chr2B 12218820 379 - 131632457 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=-1710.000000 s mm10.chr1_GL456221_random 71654 125 + 206961 gatctgctttcctctgattcctgggattagaggtgtgtctgtatt---ccagccagatcac-acagacct------------------------------agaaggtctttggatatga----------------------tgatcacttgccaaagcagccctgttgctgga-----------ttaaaatt s rheMac3.chr12 12812350 189 - 106825570 ---CTACAGGCATCTCACTACAGGCATTAGTGAATTAGTTGAATTAGGCAATTCAACTCACTACAGGCATCATTCCAATTTATAACAGCTTATATTGCTCACAGTGCATTCTGATGTGAGACAGGCAGGCACTGGAAGATATGCTATGTGGACAAAGTGGACCTATTTTTATACAATTTTGGTTTTTAAAAG i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31291 514 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2840936 364 - 6458163 I e gorGor3.chr2B 12218820 379 - 131632457 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e calJac3.chr6 11718965 154 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=196.000000 s mm10.chr1_GL456221_random 71779 8 + 206961 cctctaca s nomLeu2.GL397366 2841300 8 - 6458163 CCTAGACT i nomLeu2.GL397366 I 364 I 1 s rheMac3.chr12 12812539 8 - 106825570 CATTTATT i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31291 514 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e gorGor3.chr2B 12218820 379 - 131632457 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e calJac3.chr6 11718965 154 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=-990.000000 s mm10.chr1_GL456221_random 71787 1 + 206961 -------------A s gorGor3.chr2B 12219199 1 - 131632457 -------------A i gorGor3.chr2B I 379 C 0 s nomLeu2.GL397366 2841309 1 - 6458163 -------------A i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12812547 14 - 106825570 GAGCCCTAGACTCG i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31291 514 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e calJac3.chr6 11718965 154 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=187.000000 s mm10.chr1_GL456221_random 71788 1 + 206961 A s gorGor3.chr2B 12219200 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841310 1 - 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12812561 1 - 106825570 G i rheMac3.chr12 C 0 C 0 s turTru2.JH490333 31805 1 + 53618 A i turTru2.JH490333 I 514 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e calJac3.chr6 11718965 154 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=27897.000000 s mm10.chr1_GL456221_random 71789 40 + 206961 -GAAAATTGCAG-----------CAGCCTTTTCCAAGTCTGACACA-----GCTCCA s gorGor3.chr2B 12219201 45 - 131632457 -GGAAGtgccaa-----------taatcttcccttagtcttagtctggttggcccca i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841311 45 - 6458163 -GGAAGTGCCAA-----------CAATCTTCCCCTAGTCTTAGTCTGGTTGGCCCCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12812562 44 - 106825570 -GGAAGTGCCAG-----------CAAtcttccc-tagtctcagtctggttggcccca i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719119 44 - 158406734 -GAAAGTGCCAG-----------CCATCTTCCCTTAGTCTTAGCCT-GCTGGACCCA i calJac3.chr6 I 154 C 0 s turTru2.JH490333 31806 57 + 53618 GAAAAGTGCTAGCACTGGtagaacaatcttcccccagtcttggcctgtttggatcca i turTru2.JH490333 C 0 I 15 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=5855.000000 s mm10.chr1_GL456221_random 71829 11 + 206961 GCTCCTTCATC s gorGor3.chr2B 12219246 11 - 131632457 actccctcttc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841356 11 - 6458163 ACGCCGTCTTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12812606 11 - 106825570 acttcctcttc i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719163 11 - 158406734 TCTCCCTCTTC i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31863 15 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=1365.000000 s mm10.chr1_GL456221_random 71840 1 + 206961 A s gorGor3.chr2B 12219257 1 - 131632457 a i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841367 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12812617 1 - 106825570 a i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719174 1 - 158406734 A i calJac3.chr6 C 0 C 0 s turTru2.JH490333 31878 1 + 53618 a i turTru2.JH490333 I 15 I 58 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=29608.000000 s mm10.chr1_GL456221_random 71841 30 + 206961 GTCCACAG---------------------------------CCCACTCA-CTCACTGAGACTCA s gorGor3.chr2B 12219258 64 - 131632457 gatcacagcccagagagcactcctcagagacatctccttggccaactcatctcatgaagacccc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841368 64 - 6458163 GATCACAGTCCAGAGAGCACTCCTCAGAGACATCTCCTTGGCCCACTCATCTCATTAAGACCCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12812618 64 - 106825570 gatcacagcccagagatcgcccctcagagatatctccttggcccactcatctcattaagacctc i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719175 64 - 158406734 GATCACAGATGAGATAGTACTCCTCAGAGACGTCTCCTTGACCCACTCATCTCATTAAGACCCC i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31879 58 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=398.000000 s mm10.chr1_GL456221_random 71871 1 + 206961 C s gorGor3.chr2B 12219322 1 - 131632457 t i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841432 1 - 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12812682 1 - 106825570 t i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719239 1 - 158406734 T i calJac3.chr6 C 0 C 0 s turTru2.JH490333 31937 1 + 53618 c i turTru2.JH490333 I 58 I 32 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=15602.000000 s mm10.chr1_GL456221_random 71872 25 + 206961 --GTTTTCC--TTCCA--ACAA-CCGTGCTTT- s gorGor3.chr2B 12219323 33 - 131632457 tagttattcagttccatagcaatctatgctttc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841433 33 - 6458163 TAGTTATTCAGTTCCATAGCAATCTATGCTTTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12812683 33 - 106825570 tagttattcagttccatagcaatctatgatttc i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719240 33 - 158406734 TAGTTACTCAGTTCCATCACAATCTATGCTTTC i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31938 32 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=1500.000000 s mm10.chr1_GL456221_random 71897 1 + 206961 C s gorGor3.chr2B 12219356 1 - 131632457 c i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841466 1 - 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12812716 1 - 106825570 c i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719273 1 - 158406734 C i calJac3.chr6 C 0 C 0 s turTru2.JH490333 31970 1 + 53618 c i turTru2.JH490333 I 32 I 206 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=32163.000000 s mm10.chr1_GL456221_random 71898 68 + 206961 CTTTATGAGACTGTTCTCAGTTGCAACTGGCTATTTACTGACTGTCTTTTCAGGGA-TGGATGCCCTCC s gorGor3.chr2B 12219357 59 - 131632457 ctccgtaacactactctcaattgtaaatgggtatttatt---tgtgttt------a-ttaatgctcatc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841467 59 - 6458163 CTCCATAACACTACTCTCAACTTTAAATGGGTACTTATT---TGTGTTT------A-TTAATGCTCATC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12812717 55 - 106825570 ctccataacactactctcaattgtaaatggg----tatt---tgtgttt------a-ttaatgcccatc i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719274 60 - 158406734 CTCCATAACACTACTCTCAATTGTAAATGGGTATttatt---tatgttt------atttaatgcccatc i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31971 206 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH566347 1745429 56161 + 1805508 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=11511.000000 s mm10.chr1_GL456221_random 71966 11 + 206961 TCCTCCACTGG s gorGor3.chr2B 12219416 11 - 131632457 ttctccacttg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841526 11 - 6458163 TTCTCCACCTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12812772 11 - 106825570 ttctccacctg i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719334 11 - 158406734 ttctccacctg i calJac3.chr6 C 0 C 0 s dasNov3.JH570308 472417 11 - 2504864 TCTCCCACCTG i dasNov3.JH570308 n 56161 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31971 206 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=474.000000 s mm10.chr1_GL456221_random 71977 1 + 206961 G s gorGor3.chr2B 12219427 1 - 131632457 a i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841537 1 - 6458163 A i nomLeu2.GL397366 C 0 I 54 s rheMac3.chr12 12812783 1 - 106825570 a i rheMac3.chr12 C 0 I 54 s calJac3.chr6 11719345 1 - 158406734 a i calJac3.chr6 C 0 I 54 s dasNov3.JH570308 472428 1 - 2504864 G i dasNov3.JH570308 C 0 C 0 s taeGut1.chr26_random 386150 1 - 1627540 G i taeGut1.chr26_random N 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31971 206 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=3569.000000 s mm10.chr1_GL456221_random 71978 130 + 206961 GCAGGACTCCACCTGGGCAGTACTCCCA--CCTGGGCAGT---------------ACTCCCACCTGGGCAGGGCCCCACCTGTGCAGGGTCCCACCTGGACAGCAACACCGCCTGAACAGGGCTCCACCTGGGGAGGGTATCACCTG s gorGor3.chr2B 12219428 55 - 131632457 -cagtgcctaccctg------acccccaaatataggca-----------------actccatgttggtc----------ttattcagtg---------------------------------------------------------- i gorGor3.chr2B C 0 C 0 s dasNov3.JH570308 472429 143 - 2504864 GCAGGCTCCCACCTGAGGAG-GCTCCCA--CCTGGATAGGTTCCCACCTGAGGAAGCGCCCACCTGGGCAGGTCCCCACCTGGGCAGGCTCCCACCTAGGCAG-GTCCCCACCTGGATAAGTTCCCACCTGAGGAGGCTCCCACCTG i dasNov3.JH570308 C 0 n 0 s taeGut1.chr26_random 386151 127 - 1627540 GCAGTGTCTCACCTGGGCAG-TGTCTCA--CCTAGGCAG----------------TGTCTCACCTAGGCAGTGTCTCACCTAGGCAGTGTCTCACCTAGGCTG-TGACTCACCTGGGCAGTGGCTCACCTGGGCAGTGACTCACCGG i taeGut1.chr26_random C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31971 206 + 53618 I e rheMac3.chr12 12812784 54 - 106825570 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841538 54 - 6458163 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e calJac3.chr6 11719346 54 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=-427.000000 s mm10.chr1_GL456221_random 72108 17 + 206961 TCCCATCACCAGATCCA--- s taeGut1.chr26_random 386278 12 - 1627540 --------GCAGGTCCTCGG i taeGut1.chr26_random C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31971 206 + 53618 I e rheMac3.chr12 12812784 54 - 106825570 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841538 54 - 6458163 I e gorGor3.chr2B 12219483 0 - 131632457 C e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e calJac3.chr6 11719346 54 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=28125.000000 s mm10.chr1_GL456221_random 72125 54 + 206961 TCTGGGCACCCAAGGACTAGCTAACCAGGAATAGCAGACACTGGAAGAAT-TTTG s gorGor3.chr2B 12219483 54 - 131632457 -ctgtgtacccaaagactcgctgaccgagcctagtagatgttcaataattatttg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841592 55 - 6458163 gctgtgtacccaaagactcactgaccaagcctagcagatattcaataagtatttg i nomLeu2.GL397366 I 54 C 0 s rheMac3.chr12 12812838 55 - 106825570 gctgtgtacccaaagacttgctgactgagcctagtagatgttcaataagtatttg i rheMac3.chr12 I 54 C 0 s calJac3.chr6 11719400 55 - 158406734 gctgtgtatctaaagacttgctggctgagcatagtaggtattcagtgaacatttg i calJac3.chr6 I 54 C 0 s taeGut1.chr26_random 386290 50 - 1627540 CGTGGGCACC---GCCCTCACTG-CCGGGCACAACTTCCCTCTGGAGAGC-TTTG i taeGut1.chr26_random C 0 N 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31971 206 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=14352.000000 s mm10.chr1_GL456221_random 72179 21 + 206961 CAGCCAGTTCTCTCTTTCAAT s gorGor3.chr2B 12219537 21 - 131632457 CGATCAGTTCTCTCTTGCCAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2841647 21 - 6458163 CAATCAGTTCCATCTTGCCAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12812893 21 - 106825570 CAATCAGTTCTCTCTTGCCAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719455 21 - 158406734 CAATCAATTCTCTTTTGCCAT i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 31971 206 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=398.000000 s mm10.chr1_GL456221_random 72200 1 + 206961 G s gorGor3.chr2B 12219558 1 - 131632457 A i gorGor3.chr2B C 0 I 435 s nomLeu2.GL397366 2841668 1 - 6458163 A i nomLeu2.GL397366 C 0 I 436 s rheMac3.chr12 12812914 1 - 106825570 A i rheMac3.chr12 C 0 I 264 s calJac3.chr6 11719476 1 - 158406734 A i calJac3.chr6 C 0 C 0 s turTru2.JH490333 32177 1 + 53618 G i turTru2.JH490333 I 206 I 440 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 72201 3 + 206961 ACT e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e rheMac3.chr12 12812915 264 - 106825570 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e panTro4.chr2B 12056798 1322 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e calJac3.chr6 11719477 0 - 158406734 C e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=373.000000 s mm10.chr1_GL456221_random 72204 4 + 206961 TCTA s panTro4.chr2B 12058120 4 - 247518478 TCTA i panTro4.chr2B I 1322 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e rheMac3.chr12 12812915 264 - 106825570 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e hg19.chr2 12118084 1327 - 243199373 I e calJac3.chr6 11719477 0 - 158406734 C e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29205663 1774 - 121549591 I a score=4070.000000 s mm10.chr1_GL456221_random 72208 45 + 206961 TCCTAAAG-ATTTAACTCTATATTTTATACTAAAATTCCTCTTAAA s rn5.chr9 29207437 43 - 121549591 TCCTGAAG-ATTTAACT--ACATTTTATACTAAATTTCCTCTTAAA i rn5.chr9 I 1774 C 0 s panTro4.chr2B 12058124 46 - 247518478 CCTTAGAGAATGTGACTATATATTTTATGTTGAATTTCTTCTTAAA i panTro4.chr2B C 0 I 5 s calJac3.chr6 11719477 26 - 158406734 --------------------TTTCTCCTTTTGTCCATCCTCTCAGC i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e rheMac3.chr12 12812915 264 - 106825570 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=1297.000000 s mm10.chr1_GL456221_random 72253 36 + 206961 TT-AAAAAAGAAGATTTCTTAAATTTGGGGGTTTTGt s rn5.chr9 29207480 37 - 121549591 TTAAAAAAAGAATATTTCTTAAATTTGGCAgttttgt i rn5.chr9 C 0 I 156 s calJac3.chr6 11719503 18 - 158406734 ------AAGGAAAATTCTCTGGGT------------- i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e rheMac3.chr12 12812915 264 - 106825570 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e panTro4.chr2B 12058170 5 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=124.000000 s mm10.chr1_GL456221_random 72289 61 + 206961 tctgttctgtttgagacaagatttctctgtgcagccctggctgtcctggaactcactttgt s calJac3.chr6 11719521 29 - 158406734 -------------------GACTTCTCTGTGG-------------CTGGAATCCATTCAGG i calJac3.chr6 C 0 I 364 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e rheMac3.chr12 12812915 264 - 106825570 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e panTro4.chr2B 12058170 5 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29207517 156 - 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 72350 51 + 206961 agatcaggatgccctcaactagaaaacattagcaatctgactgcctgtctc e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e rheMac3.chr12 12812915 264 - 106825570 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e panTro4.chr2B 12058170 5 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e calJac3.chr6 11719550 364 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29207517 156 - 121549591 I a score=627.000000 s mm10.chr1_GL456221_random 72401 41 + 206961 ctgaatgttggaat-----taaaggcgtgtgtcaccaagcctgact s rheMac3.chr12 12813179 46 - 106825570 CTGAAAGTTGGATTCAGAATATAGACTTACTTTAAGAAAGCTAAAT i rheMac3.chr12 I 264 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e panTro4.chr2B 12058170 5 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e calJac3.chr6 11719550 364 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29207517 156 - 121549591 I a score=-312.000000 s mm10.chr1_GL456221_random 72442 4 + 206961 --TTTA s rn5.chr9 29207673 4 - 121549591 --TTTA i rn5.chr9 I 156 C 0 s rheMac3.chr12 12813225 4 - 106825570 TATT-- i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e panTro4.chr2B 12058170 5 - 247518478 I e hg19.chr2 12118084 1327 - 243199373 I e calJac3.chr6 11719550 364 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=225.000000 s mm10.chr1_GL456221_random 72446 12 + 206961 --TATATTTTTTAA s rn5.chr9 29207677 12 - 121549591 --TATTATTTTAAA i rn5.chr9 C 0 C 0 s hg19.chr2 12119411 12 - 243199373 TATATATTTTAT-- i hg19.chr2 I 1327 C 0 s rheMac3.chr12 12813229 10 - 106825570 --TATTTTTGTT-- i rheMac3.chr12 C 0 I 119 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e panTro4.chr2B 12058170 5 - 247518478 I e calJac3.chr6 11719550 364 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=994.000000 s mm10.chr1_GL456221_random 72458 24 + 206961 GTACTG-----TATTTATTTGGGAGCGAG s rn5.chr9 29207689 29 - 121549591 GTACTACAATTTATTTATTtgggtgtgag i rn5.chr9 C 0 C 0 s hg19.chr2 12119423 22 - 243199373 --GTTG-----AATTTCTTCTTAAAAGAG i hg19.chr2 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e rheMac3.chr12 12813239 119 - 106825570 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e panTro4.chr2B 12058170 5 - 247518478 I e calJac3.chr6 11719550 364 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=7065.000000 s mm10.chr1_GL456221_random 72482 148 + 206961 gtgcgcatgtgccatggtgtgcaggtggaggctgaatgacaccctgtagaatctgtgctctccttccaccctccagatcaca----gggatcagactca---gatcaagcttgacggccaatgcctgcacccacttagccatcctcagcagcccc s rn5.chr9 29207718 153 - 121549591 gcacacatctgctgtggtgtgcaagtgaag-ttgaagggcagcttgtagaatctgttctctccttccacc-tatggatcctacctagggttcaaacccgtgtcatcagacttgagggccaacacttttacccactcagccatcctcagcagcccc i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e rheMac3.chr12 12813239 119 - 106825570 I e equCab2.chr6 66903122 1131 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e panTro4.chr2B 12058170 5 - 247518478 I e hg19.chr2 12119445 0 - 243199373 C e calJac3.chr6 11719550 364 - 158406734 I e vicPac1.scaffold_4435 109397 1471 - 111236 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=207.000000 s mm10.chr1_GL456221_random 72630 1 + 206961 C s hg19.chr2 12119445 1 - 243199373 T i hg19.chr2 C 0 C 0 s vicPac1.scaffold_4435 110868 1 - 111236 C i vicPac1.scaffold_4435 I 1471 C 0 s equCab2.chr6 66904253 1 - 84719076 C i equCab2.chr6 I 1131 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6320081 934 + 10418462 I e turTru2.JH490333 32178 440 + 53618 I e rheMac3.chr12 12813239 119 - 106825570 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2841669 436 - 6458163 I e gorGor3.chr2B 12219559 435 - 131632457 I e panTro4.chr2B 12058170 5 - 247518478 I e calJac3.chr6 11719550 364 - 158406734 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29207871 0 - 121549591 C a score=142111.000000 s mm10.chr1_GL456221_random 72631 36 + 206961 AAAGTAGCTTTCTTACAATATAGAAAACCACAGATA s rn5.chr9 29207871 36 - 121549591 AAAGTAGCTTTCTTATGATACAGAAAACCACAAATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321015 36 + 10418462 AAACTTGCTTTCCTGTCACTTAGAAAACCACAAACG i speTri2.JH393335 I 934 C 0 s ochPri2.scaffold_3455 159034 36 - 305382 AAACTAGCTTTCTTACAATGGACAGAGCCCCACGTG i ochPri2.scaffold_3455 N 0 C 0 s hg19.chr2 12119446 36 - 243199373 AAGGTAGCTTTCTTAAAACTTAGAAAACCATAAATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058175 36 - 247518478 AAGGTAGCTTTCTTAAAACTTAGAAAACCATAAATG i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 12219994 36 - 131632457 AAGGTAGCTTTCTTAAAACTTAGAAAACCATAAATG i gorGor3.chr2B I 435 C 0 s nomLeu2.GL397366 2842105 36 - 6458163 AAGGTAGCTTTCTTAAAACTTAGAAAACCATAAATG i nomLeu2.GL397366 I 436 C 0 s rheMac3.chr12 12813358 36 - 106825570 AAGGTAGCTTTCTTAAAACTTAGAAAATCATAAATG i rheMac3.chr12 I 119 C 0 s calJac3.chr6 11719914 36 - 158406734 AAAGTAGCTTTCTTAAAACTGGGAAGATCACAAATG i calJac3.chr6 I 364 C 0 s vicPac1.scaffold_4435 110869 36 - 111236 AAAATCGCTTTCTTGCAGTTTAGAAAACCAGGAATG i vicPac1.scaffold_4435 C 0 I 1 s equCab2.chr6 66904254 36 - 84719076 AAAACAGCCTTCTTAGAACTTAGAAAACCAAAAATG i equCab2.chr6 C 0 I 3 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32178 440 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-7201.000000 s mm10.chr1_GL456221_random 72667 3 + 206961 GAG s rn5.chr9 29207907 3 - 121549591 TAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321051 3 + 10418462 TAT i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_3455 159070 3 - 305382 TGT i ochPri2.scaffold_3455 C 0 C 0 s hg19.chr2 12119482 3 - 243199373 TAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058211 3 - 247518478 TAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220030 3 - 131632457 TAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842141 3 - 6458163 TAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813394 3 - 106825570 TAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719950 3 - 158406734 TAT i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 110906 1 - 111236 -A- i vicPac1.scaffold_4435 I 1 I 4 s turTru2.JH490333 32618 1 + 53618 -G- i turTru2.JH490333 I 440 I 2623 s equCab2.chr6 66904293 2 - 84719076 AA- i equCab2.chr6 I 3 I 1 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=64525.000000 s mm10.chr1_GL456221_random 72670 30 + 206961 A--------GCTCTCCGCTCG-GTGACTACTCATTCAAA s rn5.chr9 29207910 30 - 121549591 A--------GCTCTCAGCTCA-ATGAGTAATCATTCAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321054 33 + 10418462 AATG-----ACTCTCCGTTCA-GTTCTGAATCCTCCATA i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_3455 159073 39 - 305382 GAGGGATTTGCTCTCCGTCTGCTTTGGTAAGCGTGGGCT i ochPri2.scaffold_3455 C 0 C 0 s hg19.chr2 12119485 31 - 243199373 A--------ACTTCCCATTCAATTTTATAGTCATTTATA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058214 31 - 247518478 A--------ACTTCCCATTCAATTTTATAGTCATTTATA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220033 31 - 131632457 A--------ACTTCCCATTCAATTTTATAGTCATTTATA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842144 31 - 6458163 A--------ACTTCCCATTCAATTTTATAGTCATTTATA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813397 31 - 106825570 A--------ACTTCCCATTCGATTTTATAGTCATTTATA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719953 31 - 158406734 A--------ACTTCCCATTCAATTTTATAATCATTGATA i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 110911 31 - 111236 A--------AACCTCCATTCCATTTTGTAGTCATTTATA i vicPac1.scaffold_4435 I 4 C 0 s equCab2.chr6 66904296 31 - 84719076 A--------AACCTCCATTCCATTTTATAATCATTTCTA i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=836098.000000 s mm10.chr1_GL456221_random 72700 198 + 206961 CTAACTCTCTGCTCCACTCTTTGAAGGAATCTCTGGAAGCCTGTCAAAATCTGGTCCCTCTGTCCAAAGTGGTGCACAATATTCTCACCAGTCTGGAGCAGACTTTCCACCCGTCAGTGCTGCTGACGTTGTTCAGCAAGGTCAACCTCCGGGAATACCCCAGCCTGGTGGCAATTTTCAGAAGCTTCAGAAACGGTA s rn5.chr9 29207940 198 - 121549591 CTAACCCTCTGATCCACTCTTTGAAGGAATCTCTGGAAGCCTGTCAAAATCTGGTCCCTCTATCCAAAGTGGTGCACAATATTCTCACCAGTCTGGAGCAGACTTTCGACCCATCGATGCTGCTGATATTGTTCAGCAAAGTCAACCTACGGGAATACCCCAGTCTGGGGGCAATTTGTAGAAGCTTCAGAAATGGTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321087 198 + 10418462 CTCATCCTTCCCTCCATGTTTTAAAGGAATCGCTGGAGGCCTGTACAAATTTGGTCCCTGTGTCCAGAGTGGTGTACAACACTCTCACCCAACTGGAGAAGACATTTAACCTTTCACTTCTGCTGACATTGTTCAGCCAAATTAACCTGCGTGAATACCCTAATCTGACGGAGATTTTCGGGAGCTTCAGAAGTGGTA i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_3455 159112 197 - 305382 GTCATTCTTTGCTCCATTC-TGAAAGGACTCGGTGGAGGCCTGTCGTCATTTGGTTCCTGTAAGCAGAGTGGTGTACGACGTCCTTACCGGGCTGGAGCAGACATTCACCCCAGCATTGCTGGGCACCTTGTTCAGCCACATCAACCTGCGTGAATACCCCAGGCTGGCAGCAGTTCTCAGGAGCTTCAGGAGAGGTG i ochPri2.scaffold_3455 C 0 C 0 s hg19.chr2 12119516 196 - 243199373 A-AAACCTTCACTCCATTT-TTATAGGAATCTCTGGAAGCCTGTAGAAATTTGATCCCTGTATCCAGAGTGGTGCACAACATTCTCACCCAACTGGAGAGGACTTTTAACCTGTCTCTTCTGGTGACATTGTTCAGTCAAATTAACCTGCGTGAATATCCCAATCTGGTGACGATTTACAGAAGCTTCAAACGTGGTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058245 192 - 247518478 A-AAACCTTCAC----TTT-TTACAGGAATCTCTGGAAGCCTGTAGAAATTTGATCCCTGTATCCAGAGTGGTGCACAACATTCTCACCCAACTGGAGAGGACTTTTAACCTGTCTCTTCTGGTGACATTGTTCAGTCAAATTAACCTGCGTGAATATCCCAATCTGGTGACGATTTACAGAAGCTTCAAACGTGGTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220064 196 - 131632457 A-AAACCTTCACTCCATTT-TTAAAGGAATCTCTGGAAGCCTGTAGAAATTTGATCCCTGTATCCAGAGTGGTGCACAACATTCTCACCCAACTGGAGAGGACTTTTAACCTGTCTCTTCTGGTGACATTGTTCAGTCAAATTAACCTGCGTGAATATCCCAATCTGGTGATGATTTACAGAAGCTTCAAACGTGGTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842175 196 - 6458163 A-AAACCTTCACTCCATTT-TTAAAGGAATCTCTGGAAGCCTGTAGAAATTTGGTCCCTGTATCCAGAGTCGTGCACAACATTCTCACGCAACTGGAGAGGACTTTTAACCTGTCTCTTCTGGTGACATTGTTCAGTCAAATTAACCTGCGTGAATATCCCAATCTGGTGACGATTTACAGAAGCTTCAAACGTGGTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813428 196 - 106825570 A-AAACCTTCACTCCATTT-TTTAAGGAATCTCTGGAAGCCTGTAGAAATTTGGTCCCTGTATCCAGAGTGGTGCACAACATTCTCACCCAACTGGAGAGGACTTTTAACCTGTCTCTTCTGGTGACATTGTTCAGTCAAATTAACCTGCATGAATATCCCAATCTGGTGACGATTTACAGAAGCTTCAAACGTGGTA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11719984 197 - 158406734 ATAAACCTTCACTCCATTT-TTTAAGGAATCTCTGGAAGCCTGTAGAAATTTGGTCCCCGTATCCAAAGTGGTGCACAACGTTCTCACCCAACTGGAGAGGACTTTTAACCTGTCTCTTCTGGTGACATTGTTCAGTCCAATTAACCTGCATGAATATCCCAATCTGGTGACGATTTACAGAAGCTTCAAACGTGGTA i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 110942 196 - 111236 ATAATCTTTCATTTCATTG-ATTAAGGAATCTCTGGAAGCCTGTGGAAATCTGGTCCCTGTATCCAGAGTAGTGTACAACATTCTAACCAAACTGCAGACCACCTTTAATCTGTCATTTCTGGAGCTGCTGTTCAGCCAAATTAACCTGCGTGAATACCCCAACCTGATGATGACACTTAAGAGCTTTGGAATTCCA- i vicPac1.scaffold_4435 C 0 C 0 s equCab2.chr6 66904327 197 - 84719076 ATAATCCTTCATTCCATTT-TTTAAGGAATCTCTGGAAGCCCATAGCAATCAGGTTCCTGTATCCAGACTGGTGTACAACATTCTCACCAAATTGGAGAAGACGTTTAATCTGTCACTTCTGGAGATGTTGTTCAGCCGAATTAACCTGTGTGAATACCCCAAACTGAAGACAATTCTTGAGAGCTTCAAAAATGGTA i equCab2.chr6 C 0 I 164 s sorAra1.scaffold_212210 420 194 + 5005 ---CTGCCTCCTTGCCCCT-CGCCAGGAGTCCCTGCGGGCCTGCCGGATGCACGTGCCCGTGTCCCAGGTGGTGTACGACATCCTCACCGCGCTGGAGAAGACCTTCagcctgctgctgctgcagaaccTCTTCAGCCCCGTGAACCTGCACGAGTACCCCCGCCTGCGGAGCAGCCTGCAGAGCTTCGTCAACCGTA i sorAra1.scaffold_212210 N 0 N 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-505.000000 s mm10.chr1_GL456221_random 72898 1 + 206961 -A s rn5.chr9 29208138 1 - 121549591 -A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321285 1 + 10418462 -A i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_3455 159309 1 - 305382 -A i ochPri2.scaffold_3455 C 0 N 0 s hg19.chr2 12119712 1 - 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058437 1 - 247518478 -A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220260 1 - 131632457 -A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842371 1 - 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813624 1 - 106825570 -A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720181 1 - 158406734 -A i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 111138 1 - 111236 C- i vicPac1.scaffold_4435 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=32662.000000 s mm10.chr1_GL456221_random 72899 21 + 206961 TGTGGTTTCTCCGATCTTTGT------------ s rn5.chr9 29208139 21 - 121549591 TGTGGTTTCTCCAATCCTTTC------------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321286 12 + 10418462 TGTG---------ATACTTTT------------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 12119713 21 - 243199373 TGAGATTTCTCAAGTGCTTTT------------ i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058438 21 - 247518478 TGAGATTTCTCAAGTGCTTTT------------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220261 21 - 131632457 TGAGATTTCTCAAGTGCTTTT------------ i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842372 21 - 6458163 TGAGATTTCTCAACTGCTTTT------------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813625 21 - 106825570 TGAGATTTCTCAAGTCCTTTT------------ i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720182 21 - 158406734 TGAGATTTCTCAAGTGCTTTT------------ i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 111139 32 - 111236 -CAGACTTTTTGAAATCTTTGGGGATATAGAAG i vicPac1.scaffold_4435 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4907798 4828 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=357.000000 s mm10.chr1_GL456221_random 72920 1 + 206961 C s rn5.chr9 29208160 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321298 1 + 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 12119734 1 - 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058459 1 - 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220282 1 - 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842393 1 - 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813646 1 - 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720203 1 - 158406734 T i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 111171 1 - 111236 C i vicPac1.scaffold_4435 C 0 C 0 s myoLuc2.GL429770 4912626 1 - 30916457 C i myoLuc2.GL429770 I 4828 I 368 e pteVam1.scaffold_24822 2051 2 - 7207 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=148805.000000 s mm10.chr1_GL456221_random 72921 63 + 206961 ACATGTGCAGTGGTGCTACAGTAAAAGCCTGGGTTTGTTTCCAG---TGTGGATTGTGCATTCCAA s rn5.chr9 29208161 63 - 121549591 ACATGCACAGTGTTGCCACAGTAAAAGCCTGGGTTTGTTGCCAG---TGTGGAACATACACTCCAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321299 49 + 10418462 GCACTTGAGGGGTTGCTATGCTGAAATTTCAGGTTTGTTTC-----------------CATGTCAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12119735 66 - 243199373 GCATTTAAAAAGTTGCTATGGTAAAAGTCTGGGTTTACTTCTAGCCCTGTGGAATATGCACGTTAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058460 66 - 247518478 GCATTTAAAAAGTTGCTATGGTAAAAGTCTGGGTTTACTTCTAGCCCTGTGGAATATGCACGTTAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220283 66 - 131632457 GCATTTAAAAAGTTGCTGTGGTAAAAGTCTGGGTTTACTTCTAGCCCTGTGGAATATGCACGTTAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842394 66 - 6458163 GTATTTAAAAAGTTGCTATGGTAAAAGTCTGGGTTTACTTCTAGCCCTGTGGAATATGCATGTTAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813647 66 - 106825570 GCATTTAAAAAGTTGCTATGGTAAAAGTCGGGGTTTACTTCTAGCCCTGTGGAATATGCATATTAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720204 66 - 158406734 GCATTTAAAAAGTTGCTATGGTAAAAGTCTGGGTCTACTTCTAGCCCTGTGGAATATCCACATTAA i calJac3.chr6 C 0 C 0 s vicPac1.scaffold_4435 111172 64 - 111236 --ACGAGAGAAGTTGATATGCTAGAAGTTTGGGTTGGTTTTATGCCTTCGGGAATATGCACTTTAA i vicPac1.scaffold_4435 C 0 N 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4912627 368 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=160974.000000 s mm10.chr1_GL456221_random 72984 123 + 206961 TGCCT-GCTTTCCCTGTGTAAAGGCATAGAC-CA---------------------CGCTTGCTCACAAAAGCTGCT-----GGAAGCATCATCC-TGGCTGACTCTGAC------------------CTCAGCTTCCACGATTCGAATTTCTATAGGACAC--AGGTGTTTT s rn5.chr9 29208224 123 - 121549591 TGCCT-GCTTTCCCTGTGTAAAGGCGTAGGT-CA---------------------CACTCGCTCACAAAAGCTGCT-----GGAGGGGTAGACC-TGACTGACGCTGAC------------------CTCAGTTTCCCCAAGGTGAATTTCTGTAGGACAC--AGATGTTTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321348 166 + 10418462 CCCCG-GCTTCCTTTTGGCGTGGCTGGAGGG-CAGCCCTTCTTGCCTCTGTCCCCAACTCTCTAAGATGAATTTCTAGAGGAGAGGGACCATTC-TGCCTAACCTTTCCTGTGCATTTGGAGGATTGCCCAGTATCCTGGAC---AATCTCTAAGGAATGCTAAAGTGATGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12119801 124 - 243199373 TCCCCCGCCTTCTCTCTGGGGTGGAATGGAC-CA---------------------TATTCTCTCATTGGTACAGCT-----GCAGGAGCAGCCCCTTGCTAAAGCTGAT------------------CCCAAC-TCTCTAAGATGAACTTCTAGAGGACAT--AAACATTTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058526 124 - 247518478 TCCCCCGCTTTCTCTCTGGGGAGGAATGGAC-CA---------------------TATTCTCTCATTGGTACAGCT-----GCAGGAGCAGCCCCTTGCTAAAGCTGAT------------------CCCAAC-TCTCTAAGATGAACTTCTAGAGGACAT--AAACATTTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220349 124 - 131632457 TCCCCCGCTTTCTCTCTGGGGAGGAATGGAC-CA---------------------TATTCTCTCATTGGTACAGCT-----GCAGGAGCAGCCCCTTGCTAAAGCTGAT------------------CCCAAC-TCTCTAAGATGAACTTCTAGAGGACAT--AAACATTTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842460 124 - 6458163 TCCCCCGCTTTCTCTCTGGGGAGGAATGGAC-CA---------------------TATTCTCTCATTGGTACAGCT-----GCAGGAGCAGCCCTTTGCTAAAGCTGAT------------------CCCAAC-TCTCTAAAATGAATTTCTAGAGGACAT--AAACATTTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813713 122 - 106825570 TCCCCCACTTTCTCTCTGGGGAGGAATGGAT-CA---------------------TATTCTCTCATTGGTACAGCT-----TCAGGAGCAGCCCCTTGCTAAAGCTGAT------------------TCCAGC-TCTCTAAAATGAATTTCTAGAGGACAT--AAACATT-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720270 122 - 158406734 TCTCTGGCTTTCTCTTTAGGAAAGAATGGACTCA---------------------TTTTCTTTCATTGG---GGCT-----GCAGGGGCAGCCCCTTGCTAAAGCTGAC------------------CCCAGC-TCTCTAAGATGAATTTCCAGAGGGCAT--AAACATTTT i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4912627 368 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=412.000000 s mm10.chr1_GL456221_random 73107 5 + 206961 TAATA s rn5.chr9 29208347 5 - 121549591 TGATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321514 5 + 10418462 AAATG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12119925 5 - 243199373 TTATG i hg19.chr2 C 0 I 27 s panTro4.chr2B 12058650 5 - 247518478 TTACG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220473 4 - 131632457 TTAC- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842584 5 - 6458163 TTACG i nomLeu2.GL397366 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4912627 368 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e rheMac3.chr12 12813835 0 - 106825570 C e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e calJac3.chr6 11720392 0 - 158406734 C e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-15900.000000 s mm10.chr1_GL456221_random 73112 30 + 206961 CAGCTATTCAGTAA-AC-------CAGG----------TGTA--------------------AGttgt s rn5.chr9 29208352 44 - 121549591 CAGCTATTCAATGA-ATTTTAGTGCAGG----------AATAGCtg-------------ttcatttgg i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321519 49 + 10418462 CAA--AGCCAGAGAGAC-------CAGG----------TCCAACAGAATGATAAGGAGAGTCAGATGG i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 12058655 16 - 247518478 ----TGTTCTATGA-AT-------TTGG---------------------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220477 17 - 131632457 ---GTGATCTATGA-AT-------TTGG---------------------------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842589 26 - 6458163 ----TGTTCTATGA-AT-------TTGGAAAAAATCAT------------------------------ i nomLeu2.GL397366 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4912627 368 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e rheMac3.chr12 12813835 0 - 106825570 C e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e hg19.chr2 12119930 27 - 243199373 I e calJac3.chr6 11720392 0 - 158406734 C e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-32079.000000 s mm10.chr1_GL456221_random 73142 69 + 206961 -----------------------gacagag-----------------------------tctcacgttg-tagtacagaat--ggcctaaaatgta-atccttctgcctcagtcttctttccaag s rn5.chr9 29208396 68 - 121549591 -----------------------aacagag-----------------------------tc-caaaatg-tagcccagggt--ggcctaaaatata-atcattctacctcagccttttttccaag i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321568 101 + 10418462 -----------------------AA-AGAGAAAGGGATAGGGATGGAAAATAAGAAGTCTCTCTCTTTGTTAGTGCGGTATCCCACCTACtttacatgactctctcatgcaatctttttttaaaa i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 12058671 12 - 247518478 -----------------------AA-AAAA-----------------------------TCATAC------------------------------------------------------------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220494 13 - 131632457 ----------------------AAA-AAAA-----------------------------TCATAC------------------------------------------------------------ i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12813835 35 - 106825570 TCTTACGTGTGCTATGAATTTGGAA-AAAA-----------------------------TCATAG------------------------------------------------------------ i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4912627 368 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2842615 0 - 6458163 C e hg19.chr2 12119930 27 - 243199373 I e calJac3.chr6 11720392 0 - 158406734 C e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-8861.000000 s mm10.chr1_GL456221_random 73211 42 + 206961 tgctggtgttaca---gaagtgggccatcacacA-------CACTCGTCT-TG s rn5.chr9 29208464 42 - 121549591 tactggtgtaaca---aaagtgagccattacacA-------CACCCATCT-TG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321669 53 + 10418462 tacttattttttagttgtagttggacacaacacctttatttcacttgtttatt i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 12813870 13 - 106825570 ----------------AATTTGGCACACT------------------------ i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720392 30 - 158406734 TGTGGGTTCTATG---AATTTGGAAAAAAACAT-------------------- i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4912627 368 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e nomLeu2.GL397366 2842615 0 - 6458163 C e gorGor3.chr2B 12220507 0 - 131632457 C e panTro4.chr2B 12058683 0 - 247518478 C e hg19.chr2 12119930 27 - 243199373 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=35697.000000 s mm10.chr1_GL456221_random 73253 134 + 206961 AAAATATGAAGTATGGGACCATCTCCAGGG---AGCACGT---AGGGCAAC---------------------------------TGAAATGTCGGGA--------------------------CTTGCTATGAAAGAAAGAAAGATGGGGGGT--------GGGGAAGAGAGAGAGAgagaaggaggag-------------------------------------gaggaggaggagaggaag s rn5.chr9 29208506 66 - 121549591 AAAATAAGAACTATTGGAGCATCTACAGGG---AACACAT---AAGGCAGC---------------------------------AGAAATGTCAGAA--------------------------CCCAATAT----------------------------------------------------------------------------------------------------------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321722 244 + 10418462 tctgtatgtggccgaggatcgaacccagggtctcgcacgtgcgaggccagcgctctaccgctgagccacgctcccagcccctcgtgtaatctttaaaaccctgtgaggtccttattagctgctcttgacacacaaggaaacaaagctcagagTCCACTTTCTGTTTAGAAACAGAGCCAGAAGCGTGGGTTTCCTGATACAGGGCTCAAGATCATAACCACTACTTGAACAAGGCGGCAGGAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12119957 82 - 243199373 ACAATTTGGCATACTGGAAAATCTATAGGG---AATGCAT---AAGGTGAC---------------------------------AGAAATGCAAAGT-------------------------------TACAAA--------------------------------------------------------------------------------------------GATCAGGTCTGGTGGAAG i hg19.chr2 I 27 C 0 s panTro4.chr2B 12058683 80 - 247518478 --AATTTGGCATACTGGACAATCTATAGGG---AAGGCAT---AAGGTGAC---------------------------------AGAAATGCAAAGT-------------------------------TAGAGA--------------------------------------------------------------------------------------------GATCAGGTCTGGTGGAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220507 80 - 131632457 --AATTTGGCATACTGGAAAATCTATAGGG---AATGCAT---AAGGTGAC---------------------------------AGAAATGCAAAGT-------------------------------TACAGA--------------------------------------------------------------------------------------------GATCAGGTCTGGTGGAAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842615 82 - 6458163 AGAATTTGGCATACTGGACAATCTATAGGG---AATGCAT---AAGGTGAT---------------------------------AGAAATGCAAAGT-------------------------------TACAGA--------------------------------------------------------------------------------------------GATCAGGTCTGGTGGAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813883 67 - 106825570 ---------------GGACAATCTATAGGG---AATGCAT---AAAATGAC---------------------------------AGAAATGCAAAGT-------------------------------TACAGA--------------------------------------------------------------------------------------------GATCACGTCTAGTGGAAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720422 82 - 158406734 AAAATTTGGCATACTGGACAATCTATAGGG---AATGAAT---AAGGTTAC---------------------------------AGAAATGCAAAGT-------------------------------TACAGA--------------------------------------------------------------------------------------------GAATAGGTCTGGTGGAAG i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4912627 368 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=11702.000000 s mm10.chr1_GL456221_random 73387 12 + 206961 a------agaaggagaag s speTri2.JH393335 6321966 18 + 10418462 GCATATTGTAAGGCTGAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120039 12 - 243199373 G------ACAAGGAGAGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058763 12 - 247518478 G------ACAAGGAGAGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220587 12 - 131632457 G------ACAAGGAGAGC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842697 12 - 6458163 G------AAAAGGAGAGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813950 12 - 106825570 G------ACAAGGAGAGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720504 12 - 158406734 G------ACAAGGTCAAC i calJac3.chr6 C 0 C 0 s myoLuc2.GL429770 4912995 12 - 30916457 G------ATAATAATAAG i myoLuc2.GL429770 I 368 I 7 e pteVam1.scaffold_24822 2051 2 - 7207 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29208572 0 - 121549591 C a score=11649.000000 s mm10.chr1_GL456221_random 73399 7 + 206961 aggagaa s speTri2.JH393335 6321984 7 + 10418462 AGAGGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120051 7 - 243199373 CAGGGAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058775 7 - 247518478 CAGGGAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220599 7 - 131632457 CAGGGAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842709 7 - 6458163 CAGGGAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813962 7 - 106825570 CAGGGAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720516 7 - 158406734 CAGGGAG i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913007 7 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T e rn5.chr9 29208572 0 - 121549591 C a score=-3470.000000 s mm10.chr1_GL456221_random 73406 23 + 206961 ggag-gtg---gaggagAGGTGAAATG s rn5.chr9 29208572 16 - 121549591 -----------GGGGGGAGGGGGCGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6321991 26 + 10418462 GAAG-GTACCTGGAGAGGGAGGGAAGG i speTri2.JH393335 C 0 I 38 s hg19.chr2 12120058 22 - 243199373 GAAGAAAAAATGAATGTGGACG----- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058782 21 - 247518478 GAAG-AAAAATGAATATGGACG----- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220606 21 - 131632457 GAAG-AAAAATGAATATGGACG----- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842716 21 - 6458163 GAAG-AAAAAAGAATAAGGATG----- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813969 21 - 106825570 GAAG-AAAAATGAGTAAGGATG----- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720523 21 - 158406734 GAAG-AAAAATGAATAAGGATG----- i calJac3.chr6 C 0 C 0 s myoLuc2.GL429770 4913014 11 - 30916457 --------TTTGTTGGTGG-------- i myoLuc2.GL429770 I 7 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=6252.000000 s mm10.chr1_GL456221_random 73429 11 + 206961 GAT-ACAATGTC s rn5.chr9 29208588 11 - 121549591 AAT-TCAATATC i rn5.chr9 C 0 C 0 s hg19.chr2 12120080 12 - 243199373 Gataataataag i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058803 12 - 247518478 Gataataataag i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220627 12 - 131632457 Gataataataag i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842737 12 - 6458163 GATAATAGTAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12813990 12 - 106825570 GATAATACTAAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720544 12 - 158406734 GATAATAAGAAG i calJac3.chr6 C 0 C 0 s myoLuc2.GL429770 4913025 7 - 30916457 --TATTGTT--- i myoLuc2.GL429770 C 0 I 103 e pteVam1.scaffold_24822 2051 2 - 7207 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6322017 38 + 10418462 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=94718.000000 s mm10.chr1_GL456221_random 73440 65 + 206961 TATCTCTTT-GTGAC--TGTGGGTGTCCCAGACATTTTATATGATCATTTCACATGACCTTAAAAC----CA s rn5.chr9 29208599 67 - 121549591 TATCTCTTT-GTGACAGTGTGAGGGCCCCACACATTTTGTATGATCATTTCACATGACCTTAAAAC----CA i rn5.chr9 C 0 C 0 s hg19.chr2 12120092 63 - 243199373 tatcttttt-ttgg---tgc-cttatcgcaaacactttatttgattatctcacatcatctttaaaa----ca i hg19.chr2 C 0 I 1 s panTro4.chr2B 12058815 67 - 247518478 tatcttttt-ttgg---tgc-cttatcgcaaacactttatttgattatctcttatcatctttaaaacaacca i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12220639 63 - 131632457 tatcttttt-ttgg---tgc-cttatcgcaaacactttatttgattatctcatatcatctttaaaa----ca i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2842749 63 - 6458163 TATCTTTTT-TTGG---Tgc-attgtctcaaacactttatttgattatctcatgtcatctttaaaa----ca i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12814002 63 - 106825570 TATCTTTTT-ATGG---Tgc-attatcgcaaacactttgtttgattatctcatgtcatctttaaaa----ca i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11720556 64 - 158406734 TATCTTTTTCTTTT---TGC-GTTATCGCaaatactttatttgattatctcatgtcatttttaaag----ca i calJac3.chr6 C 0 I 1 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913032 103 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6322017 38 + 10418462 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 6700 5837 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=3280.000000 s mm10.chr1_GL456221_random 73505 2 + 206961 CC s rn5.chr9 29208666 2 - 121549591 CC i rn5.chr9 C 0 C 0 s hg19.chr2 12120156 1 - 243199373 -c i hg19.chr2 I 1 C 0 s panTro4.chr2B 12058883 1 - 247518478 -c i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12220703 1 - 131632457 -c i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2842813 1 - 6458163 -c i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12814066 1 - 106825570 -c i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11720621 1 - 158406734 -c i calJac3.chr6 I 1 C 0 s tarSyr1.scaffold_28366 12537 1 - 22953 -c i tarSyr1.scaffold_28366 I 5837 I 363 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913032 103 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6322017 38 + 10418462 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=14198.000000 s mm10.chr1_GL456221_random 73507 24 + 206961 TGTGACAAACCACCTGTGACATCA s rn5.chr9 29208668 10 - 121549591 TGTGACA--------------TCA i rn5.chr9 C 0 C 0 s hg19.chr2 12120157 12 - 243199373 ------------cctttgaagtca i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058884 12 - 247518478 ------------cctttgaagtca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220704 12 - 131632457 ------------cctttgaagtca i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842814 12 - 6458163 ------------cctttgaagtca i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814067 12 - 106825570 ------------cctttgaagtca i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720622 12 - 158406734 ------------cctgtgaagtca i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913032 103 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6322017 38 + 10418462 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=22454.000000 s mm10.chr1_GL456221_random 73531 16 + 206961 TTGTAAGTTGCTCCTG s rn5.chr9 29208678 16 - 121549591 TTGTTAGCTGCATTTA i rn5.chr9 C 0 C 0 s hg19.chr2 12120169 16 - 243199373 tttttaaccccatttg i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058896 16 - 247518478 tttttaaccccatttg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220716 16 - 131632457 tttttaaccccatttg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842826 16 - 6458163 tttttatccccatttg i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814079 16 - 106825570 tttttatccccatttg i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720634 16 - 158406734 tttttgtctccatttt i calJac3.chr6 C 0 C 0 s myoLuc2.GL429770 4913135 9 - 30916457 -------tcctaTCTA i myoLuc2.GL429770 I 103 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6322017 38 + 10418462 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=11770.000000 s mm10.chr1_GL456221_random 73547 7 + 206961 ACAGAGA s rn5.chr9 29208694 7 - 121549591 ACAAAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6322055 7 + 10418462 ACTGGGA i speTri2.JH393335 I 38 C 0 s hg19.chr2 12120185 7 - 243199373 actgaca i hg19.chr2 C 0 C 0 s panTro4.chr2B 12058912 7 - 247518478 actgaca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220732 7 - 131632457 actgaca i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842842 7 - 6458163 actgaca i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814095 7 - 106825570 actgaca i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720650 7 - 158406734 accaata i calJac3.chr6 C 0 C 0 s myoLuc2.GL429770 4913144 7 - 30916457 ATAAAGC i myoLuc2.GL429770 C 0 I 43 e pteVam1.scaffold_24822 2051 2 - 7207 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=56428.000000 s mm10.chr1_GL456221_random 73554 37 + 206961 AGGAAGGGGAAGTTCAGAGGTAACTCCAC---AGTCACTt s rn5.chr9 29208701 32 - 121549591 -----GGGGAAGTTCAGAGGTAACTCCAC---GATCACTt i rn5.chr9 C 0 C 0 s speTri2.JH393335 6322062 34 + 10418462 GAGGGAGAGCTGTGTGGGGGGCAcctccc----atcac-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120192 40 - 243199373 gagaaattaaagcccagaggtaatcttcccaaaattactt i hg19.chr2 C 0 I 220 s panTro4.chr2B 12058919 40 - 247518478 gagaaattaaagcccagaggtaatcttcccaaaattactt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12220739 40 - 131632457 gagaaattaaagcccagaggtaatcttcccaaaattactt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2842849 40 - 6458163 gagaaattaaagcccagaggtaattttcccaaaattaatt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814102 40 - 106825570 gagaaattaaagcccagaggtaattttcccacaattactt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720657 40 - 158406734 gagaaattaaagcccagaggtaattttctcaaggttaatt i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913151 43 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4512.000000 s mm10.chr1_GL456221_random 73591 3 + 206961 gtc s rn5.chr9 29208733 3 - 121549591 gtc i rn5.chr9 C 0 C 0 s panTro4.chr2B 12058959 3 - 247518478 gtt i panTro4.chr2B C 0 I 217 s gorGor3.chr2B 12220779 3 - 131632457 gtt i gorGor3.chr2B C 0 I 217 s nomLeu2.GL397366 2842889 3 - 6458163 gtc i nomLeu2.GL397366 C 0 I 217 s rheMac3.chr12 12814142 3 - 106825570 gtt i rheMac3.chr12 C 0 I 17 s calJac3.chr6 11720697 3 - 158406734 gtc i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913151 43 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6322096 0 + 10418462 C e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e hg19.chr2 12120232 220 - 243199373 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=273.000000 s mm10.chr1_GL456221_random 73594 1 + 206961 a s rn5.chr9 29208736 1 - 121549591 a i rn5.chr9 C 0 C 0 s rheMac3.chr12 12814162 1 - 106825570 a i rheMac3.chr12 I 17 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913151 43 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6322096 0 + 10418462 C e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e nomLeu2.GL397366 2842892 217 - 6458163 I e gorGor3.chr2B 12220782 217 - 131632457 I e panTro4.chr2B 12058962 217 - 247518478 I e hg19.chr2 12120232 220 - 243199373 I e calJac3.chr6 11720700 0 - 158406734 C e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=471.000000 s mm10.chr1_GL456221_random 73595 2 + 206961 ga s rn5.chr9 29208737 2 - 121549591 ga i rn5.chr9 C 0 C 0 s rheMac3.chr12 12814163 2 - 106825570 ga i rheMac3.chr12 C 0 C 0 s myoLuc2.GL429770 4913194 2 - 30916457 CA i myoLuc2.GL429770 I 43 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6322096 0 + 10418462 C e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e nomLeu2.GL397366 2842892 217 - 6458163 I e gorGor3.chr2B 12220782 217 - 131632457 I e panTro4.chr2B 12058962 217 - 247518478 I e hg19.chr2 12120232 220 - 243199373 I e calJac3.chr6 11720700 0 - 158406734 C e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=322.000000 s mm10.chr1_GL456221_random 73597 3 + 206961 ttt s rn5.chr9 29208739 3 - 121549591 ttt i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 306 3 - 13480 ttt i dipOrd1.scaffold_37788 N 0 C 0 s rheMac3.chr12 12814165 3 - 106825570 gtc i rheMac3.chr12 C 0 C 0 s myoLuc2.GL429770 4913196 3 - 30916457 CCC i myoLuc2.GL429770 C 0 I 215 e pteVam1.scaffold_24822 2051 2 - 7207 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6322096 0 + 10418462 C e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e nomLeu2.GL397366 2842892 217 - 6458163 I e gorGor3.chr2B 12220782 217 - 131632457 I e panTro4.chr2B 12058962 217 - 247518478 I e hg19.chr2 12120232 220 - 243199373 I e calJac3.chr6 11720700 0 - 158406734 C e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-5666.000000 s mm10.chr1_GL456221_random 73600 10 + 206961 ctat--ctgtca---- s rn5.chr9 29208742 12 - 121549591 ttatttctgtca---- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 309 12 - 13480 ccatcactatag---- i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322096 4 + 10418462 --------ggta---- i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 12814168 12 - 106825570 ctacttgggtct---- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720700 12 - 158406734 ----tgttgtctgtta i calJac3.chr6 C 0 I 209 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913199 215 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e nomLeu2.GL397366 2842892 217 - 6458163 I e gorGor3.chr2B 12220782 217 - 131632457 I e panTro4.chr2B 12058962 217 - 247518478 I e hg19.chr2 12120232 220 - 243199373 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=9858.000000 s mm10.chr1_GL456221_random 73610 173 + 206961 caaaatgcctatgataatgaatttacaatgagaagaagttA------------------GGGGGCTCTGACCTGTGATACAGtttgagcctgtagcaagat---tgtatcaccgcagga-tgtgtgacaaaataaaattgttcaccgtgtgttctgaaaatggagaaaggagagacttggaccccacaatctcct s rn5.chr9 29208754 176 - 121549591 caaaatgcctatgataatctacttacagtgagaaaaagtCA------------------GGGGACTCTGACCTGTCATACACTTTGAGCCTTTAGCAATATAG-TGTATCATAGCAGGAATGTATAAACAAGTAAAATTGTTCACTGTGTGTTCTAAAAATGGAGAAAGGAGAGGATTGGATCCCACAATCCCCT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 321 190 - 13480 caaaaggcccgagatggttcacttataaagagaaaaggttctttttggctcatagctttgtagagtccagtctatgat-cagtt---gtctgttgttgcttta-ggcctcaagacaggagtgtgtagtaaagtaaacctgctcattaggtggccagaaggtagagaaagGAGAGATCAGGGCCCCGCAGTCCCCT i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322100 171 + 10418462 aaaaatacctgagggaattaagttataaagagagaaggtcg-attttgctcaccgttttggagggtccaacccatgat-caagt---ccctgtggctttgggactgtggcaaggcagga-------------caAAGCCACTCACCTCCAGGCCAGAAAGGGAAAAGAGGAGAGACcagagtcaca------ccc i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 12814180 115 - 106825570 cccaatacc--------------------------agggcc------------------caagattttaaccactAGTCCAGACAGGGACAGCTGGAAGGCA--GATTGTAAAGCTAGA----GAAGGGAAGAAAAGTAGCT-----------------ACAGAGAAAGGGAGG----GAACCGCA--------- i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913199 215 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e nomLeu2.GL397366 2842892 217 - 6458163 I e gorGor3.chr2B 12220782 217 - 131632457 I e panTro4.chr2B 12058962 217 - 247518478 I e hg19.chr2 12120232 220 - 243199373 I e calJac3.chr6 11720712 209 - 158406734 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=2645.000000 s mm10.chr1_GL456221_random 73783 5 + 206961 ctaga s rn5.chr9 29208930 5 - 121549591 CTAGA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 511 5 - 13480 TCAGA i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322271 5 + 10418462 ccagt i speTri2.JH393335 C 0 C 0 s myoLuc2.GL429770 4913414 5 - 30916457 ccaga i myoLuc2.GL429770 I 215 I 11 e pteVam1.scaffold_24822 2051 2 - 7207 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e rheMac3.chr12 12814295 0 - 106825570 C e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e nomLeu2.GL397366 2842892 217 - 6458163 I e gorGor3.chr2B 12220782 217 - 131632457 I e panTro4.chr2B 12058962 217 - 247518478 I e hg19.chr2 12120232 220 - 243199373 I e calJac3.chr6 11720712 209 - 158406734 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=35.000000 s mm10.chr1_GL456221_random 73788 9 + 206961 ggtgctccc s rn5.chr9 29208935 9 - 121549591 GATGTCCCC i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 516 9 - 13480 GACACGTCC i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322276 8 + 10418462 gacttccc- i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 12814295 9 - 106825570 GATGTAGCT i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913419 11 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e nomLeu2.GL397366 2842892 217 - 6458163 I e gorGor3.chr2B 12220782 217 - 131632457 I e panTro4.chr2B 12058962 217 - 247518478 I e hg19.chr2 12120232 220 - 243199373 I e calJac3.chr6 11720712 209 - 158406734 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-21170.000000 s mm10.chr1_GL456221_random 73797 84 + 206961 aatgacctaacacctcctcttggccccagcacttcacatcagcccatctccctgtagt-gtcacc--tgggaacctaagctt-----tGAGG- s rn5.chr9 29208944 84 - 121549591 AATAACCTAACACCTCCTCTCAGCCCCAGCTCTTCGAGTCATCCCGTCTCCCTGTAGT-GTCACC--TGAGACCCTAAGTTT-----TGAGG- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 525 69 - 13480 TA------ACCACCTCCTACCA--------TCTTTCTATGATACTGT---CCTGTGGA-ACTAGCTTTTAGCACATAGACTT-----TTGGG- i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322284 62 + 10418462 ----actcggccccacctcctaagcacagcgctggggaccaaatc-------------------c--tccacacctgggctt-----tggag- i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 12814304 21 - 106825570 G------------------------------------------------------------------CAGAAAGAGAGGGTC-----TGAGA- i rheMac3.chr12 C 0 C 0 s myoLuc2.GL429770 4913430 79 - 30916457 -------tatctcctaataccagggcctggaattttaatcactcc-----actaAAGTGGGTAGC--TGGGAGGCAGAGTGTGACACTGGAGG i myoLuc2.GL429770 I 11 I 2443 e pteVam1.scaffold_24822 2051 2 - 7207 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e nomLeu2.GL397366 2842892 217 - 6458163 I e gorGor3.chr2B 12220782 217 - 131632457 I e panTro4.chr2B 12058962 217 - 247518478 I e hg19.chr2 12120232 220 - 243199373 I e calJac3.chr6 11720712 209 - 158406734 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=4229.000000 s mm10.chr1_GL456221_random 73881 24 + 206961 AGACATTCGGCATCTAGACTACAG s rn5.chr9 29209028 24 - 121549591 GGACATTTGGCATCTAGACTGCAG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 594 24 - 13480 TAACATTGAGCATCCAAGTTGTCC i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322346 24 + 10418462 agacctttaacaaccaaaccatag i speTri2.JH393335 C 0 I 1 s rheMac3.chr12 12814325 24 - 106825570 AAGAATGGAGCATGAAGTACATGG i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e nomLeu2.GL397366 2842892 217 - 6458163 I e gorGor3.chr2B 12220782 217 - 131632457 I e panTro4.chr2B 12058962 217 - 247518478 I e hg19.chr2 12120232 220 - 243199373 I e calJac3.chr6 11720712 209 - 158406734 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=755.000000 s mm10.chr1_GL456221_random 73905 1 + 206961 A s rn5.chr9 29209052 1 - 121549591 A i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 618 1 - 13480 A i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322371 1 + 10418462 a i speTri2.JH393335 I 1 C 0 s rheMac3.chr12 12814349 1 - 106825570 A i rheMac3.chr12 C 0 I 12 s calJac3.chr6 11720921 1 - 158406734 G i calJac3.chr6 I 209 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e nomLeu2.GL397366 2842892 217 - 6458163 I e gorGor3.chr2B 12220782 217 - 131632457 I e panTro4.chr2B 12058962 217 - 247518478 I e hg19.chr2 12120232 220 - 243199373 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=93392.000000 s mm10.chr1_GL456221_random 73906 62 + 206961 ACTGGATAGATAAAGAAACACAAAGAGGGGCAGCCACGGGGCT--GAGGGTTGGACTGAGAATG-- s rn5.chr9 29209053 60 - 121549591 ACTGGGTAAATAAAGGAACACAAGG--GGTCAGCCACAGGTCT--GGGGGTTGGAGTGAGAGTA-- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 619 31 - 13480 ACTGGATAAATAAAGGTAAAGAAAG------------------------GTTGGA----------- i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322372 57 + 10418462 ACTGGGTAAACAGAGGGGAAAGAAA-----AAGGAGCAGGGAC--GAAAAAAGAAGCAAGAACG-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120452 66 - 243199373 ACTGGATAAATAAAGGAGTAGGAAAAAGAACAGTGGCAGAGTTGGGAAGAAATCAGCCAGGGAAAG i hg19.chr2 I 220 C 0 s panTro4.chr2B 12059179 66 - 247518478 ACTGGATAAATAAAGGAGTAGGAAAAAGAACAGTGGCAGAGTTGGGAAGAAATCAGCCAGGGAAAG i panTro4.chr2B I 217 C 0 s gorGor3.chr2B 12220999 66 - 131632457 ACTGGATAAATAAAGGAGTAGGAAAAAGAACAGTGGCAGAGTTGGGAAGAAATCAGCCAGGGAAAG i gorGor3.chr2B I 217 C 0 s nomLeu2.GL397366 2843109 66 - 6458163 ACTGGATAAATAAAGGAGTAGGAAAAAGAACAGTGGCAGAGCTTGGAAGAAAGCAGCCAGGGAAAG i nomLeu2.GL397366 I 217 C 0 s rheMac3.chr12 12814362 66 - 106825570 ATTGGATAAATAAAGGAGCAGGAAAAAGAACCGTGGCAGAGCTGGGAAGAAAGCAGCCAGGGAAAG i rheMac3.chr12 I 12 C 0 s calJac3.chr6 11720922 62 - 158406734 ACTGGATAAATAAAGGAGTAGGAAAAAGAACAGTGGCAGAGTTGGGAAGAAAGCAGCCAGGG---- i calJac3.chr6 C 0 I 1 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e papHam1.scaffold15394 34810 3579 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=5005.000000 s mm10.chr1_GL456221_random 73968 1 + 206961 A s rn5.chr9 29209113 1 - 121549591 A i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 650 1 - 13480 A i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322429 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120518 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059245 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221065 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843175 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814428 1 - 106825570 A i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 38389 1 + 58077 A i papHam1.scaffold15394 I 3579 I 1954 s calJac3.chr6 11720985 1 - 158406734 A i calJac3.chr6 I 1 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=38351.000000 s mm10.chr1_GL456221_random 73969 28 + 206961 GAGGAC---CAGGCAATAAAACCACTTGGGA s rn5.chr9 29209114 28 - 121549591 GAGAAC---CAGGCAATAAAGCCACTTGAGA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 651 31 - 13480 GAAAGCTCTCTTACCCCAAAATGAGCAGGGA i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322430 28 + 10418462 GAGGGC---CAGGTAGTAAAAGCACTGTCCG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120519 24 - 243199373 ---GAG----AGGCAGTAAAGTCATTTTAGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059246 24 - 247518478 ---GAG----AGGCAGTAAAGTCATTTTAGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221066 24 - 131632457 ---GAG----AGGCAGTAAAGTCATTTTAGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843176 25 - 6458163 ---GAG---CAGGCAGTAAAGTCATTTTAGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814429 25 - 106825570 ---GAG---CAGGCAGTAAAGTCATTTTAGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11720986 28 - 158406734 AAAGAG---CAGGCAGTGAAGTCATTTTAGG i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12538 363 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=17081.000000 s mm10.chr1_GL456221_random 73997 11 + 206961 TTGGA----GAACAT s rn5.chr9 29209142 11 - 121549591 TTGGA----GAATAC i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 682 3 - 13480 CGG------------ i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322458 12 + 10418462 CTGGAG---GAAAAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120543 15 - 243199373 TTGGAAGTAAAACAC i hg19.chr2 C 0 I 3 s panTro4.chr2B 12059270 15 - 247518478 TTGGAAGTAAAACAC i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 12221090 15 - 131632457 TTGGAAGTAAAACAC i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 2843201 15 - 6458163 TTGGAAGATAAACAC i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 12814454 15 - 106825570 TTGGAAGTAAAACAC i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11721014 15 - 158406734 TTGGAAGAAAAACAG i calJac3.chr6 C 0 I 3 s tarSyr1.scaffold_28366 12901 15 - 22953 TTGTAGGAAAAACAC i tarSyr1.scaffold_28366 I 363 I 2613 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=86858.000000 s mm10.chr1_GL456221_random 74008 61 + 206961 GAACCCAGCAGACAGTGAA-----------------------AGAAGAGACACCA----GGCACACTGCACTGTGACATTGGT-------------------------------------GACAT s rn5.chr9 29209153 85 - 121549591 ACACCCAACAGAGAGTCAGT----TTACCGGAGAATAGT--GAGAAGAGACCCCA----GTCACACTGCACTGTGACATTGGCCTTG------------------------------CTCACTAT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 685 47 - 13480 ---------ACACTGTCAGT----------------------GGAGGAGTCACCACTGTGGACCACTCCTCTG-----------------------------------------------CTCCC i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322470 107 + 10418462 GTTTTGGCCAAAGTGTGTGG----TTCTGGCAAG--------GGAAGGACCTCCA---GGTCACACTCGATAGTGACATCGCCTTCGGTGGAGTCCCTGCTGTGGACAA---CTCCTCTGCTCCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120561 111 - 243199373 -----GGCCAAATCACATGTTCACTTACCTCAGAACAACAAGCAAAGGACCACCA---GCTCACATTG------GATATTTTCATTAGTGGAATCACCATTGTTGACAGTTCCTCCTTTGCTCTC i hg19.chr2 I 3 C 0 s panTro4.chr2B 12059288 111 - 247518478 -----GGCCAAATCACATGTTCACTTACCTCAGAACAACAAGCAAAGGACCACCA---GCTCACATTG------GATATTTTCATTAGTGGAATCACCATTGTTGACAGTTCCTCCTTTGCTCTC i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 12221108 111 - 131632457 -----GGCCAAATCACATGTTCACTTACCTCAGAACAACAAGCAAAGGACCACCA---GCTCACATTA------GATATTTTCATTAGTGGAATCACCATTGTTGACAGTTCCTCCTTTGCTCTC i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 2843219 117 - 6458163 -----GGCCAAATCATATGTTCACTTACCTCAGAACAACAAGCAAAGGACCACCA---GCTCACGTTGGATTGTGATATTTTCATTAGTGGAATCACCACTGTTGACAGTTCCTCCTTTGCTCTC i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 12814470 117 - 106825570 -----GGCCAAATCATATGTTCACTTACCTCAGAACAACAAGCAAAGGACCACCA---GCTCACATTGGATTGTGATATTTTCATTAGTGGAATCACCATTGTTGACAGTTCCTCCTTTGCTCTC i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11721032 116 - 158406734 -----GGACAAAGCATATGTTCACTTGCCTCAGAACAACAAGGGAAGGGCCACTA---GC-CACATTGGATTGTGATGTTTTCTTTAGTGGAATCGCCATTGTTGACAATTCCTCCTTTGCTCTC i calJac3.chr6 I 3 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e equCab2.chr6 66904524 164 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=181815.000000 s mm10.chr1_GL456221_random 74069 70 + 206961 TGATGTGTCACTATCAAAAGGATCGTCCCCAGG-GGAGAGA-GGATTCTTTAAGATACGTGAGCAGCTGAGG s rn5.chr9 29209238 70 - 121549591 TGACATGTCACTGTCAAAAGGCTCCTCTCTGGG-GGAAGGA-GGATTCCTTAAGCTGAGAGAGCAGCTGAGG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 732 59 - 13480 TGACACTTCGTCATCACTAGGCTTCTCAATAAA-GGAAGAATGGATTCCTAA------------AGCTAAGG i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322577 68 + 10418462 TGACACTTCAC-AGCAAGGGAGTCCTCCCTAAA--GACACA-GGATGCCTTGAGCTAAGGGGGCGGCAAAGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120672 71 - 243199373 TGACACTTCACCATCAAAAGGCTTCCCCCTGAAGGGAGAGA-TGATTTCTTGAGCTACATGGACAGTGAAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059399 71 - 247518478 TGACACTTCACCATCAAAAGGCTTCCCCCTAAAGGGAGAGA-TGATTTCTTGAGCTAAATGGACAGTGAAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221219 71 - 131632457 TGACACTTCACCATCAAATGGCTTCCCCCTAAAGGGAGAGA-TGATTTCTTGAGCTAAATGGACAGTGAAAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843336 71 - 6458163 TGACACTTCACCATCAAAAGGCTTCCCCCTAAAAGAAGAGA-TGATTTCTTGAGCTAAACGGACAGTGAAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814587 71 - 106825570 TGACACTTCACCATCAAAAGGCTTCCACCTAAAGGGGGAGA-TGATTTCTTGAGCTAAAGGGACAGTGAAAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721148 70 - 158406734 TGACACTTCACCACTAAAGGG-TTCCCCCCAAAGGGGCAAA-TGATTTCTTGAGCTAAAGGGACAGTGAAAG i calJac3.chr6 C 0 C 0 s equCab2.chr6 66904688 71 - 84719076 TGACACTTTACCATCAAGAGGCTCCTCCCAAAAGGAAGAAA-TGATTCCTTGAGCTAAAGGGGCAGCCAAAG i equCab2.chr6 I 164 I 21 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 32619 2623 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=9636.000000 s mm10.chr1_GL456221_random 74139 2 + 206961 GA s rn5.chr9 29209308 2 - 121549591 GA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 791 2 - 13480 GG i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322645 2 + 10418462 GA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120743 2 - 243199373 GG i hg19.chr2 C 0 I 1 s panTro4.chr2B 12059470 2 - 247518478 GG i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12221290 2 - 131632457 GG i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2843407 2 - 6458163 GG i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12814658 2 - 106825570 GG i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11721218 2 - 158406734 GG i calJac3.chr6 C 0 I 1 s turTru2.JH490333 35242 2 + 53618 GG i turTru2.JH490333 I 2623 C 0 s equCab2.chr6 66904780 2 - 84719076 GG i equCab2.chr6 I 21 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 107905 557 + 176633 T a score=-594.000000 s mm10.chr1_GL456221_random 74141 11 + 206961 --CACTTT---TACCT s rn5.chr9 29209310 11 - 121549591 --CATCTT---CACCT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 793 11 - 13480 --AAAGTT---CCCCT i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322647 7 + 10418462 --GAGT-------CCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120746 11 - 243199373 --CAAGTC---CACCT i hg19.chr2 I 1 C 0 s panTro4.chr2B 12059473 11 - 247518478 --CAAGTC---CACCT i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12221293 11 - 131632457 --CAAGTC---CACCT i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2843410 11 - 6458163 --CAAGTC---CACCT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12814661 11 - 106825570 --CAAGTC---CACCT i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11721221 14 - 158406734 --CAAGTCACGTACAG i calJac3.chr6 I 1 C 0 s micMur1.scaffold_3075 110726 10 - 176633 ---AAGCC---CACCT i micMur1.scaffold_3075 n 557 I 2377 s turTru2.JH490333 35244 11 + 53618 CACAGCTG---CAC-- i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66904782 11 - 84719076 CACAGCTG---CAT-- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I a score=-8191.000000 s mm10.chr1_GL456221_random 74152 10 + 206961 CTAGGCCTA-G s rn5.chr9 29209321 10 - 121549591 TTAAGCCTT-G i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 804 11 - 13480 CCGGGCAGACG i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322654 11 + 10418462 CCAGGCAGGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120757 11 - 243199373 CCAGGTAGGGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059484 11 - 247518478 CCAGGTAGGGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221304 11 - 131632457 CCAGGTAGGGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843421 11 - 6458163 CCAGGTAGGGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814672 10 - 106825570 CCAGGTAGGG- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721235 7 - 158406734 GCAGGGG---- i calJac3.chr6 C 0 C 0 s turTru2.JH490333 35255 10 + 53618 GTGGGCCTGA- i turTru2.JH490333 C 0 I 175 s equCab2.chr6 66904793 10 - 84719076 GTGGGCCCAT- i equCab2.chr6 C 0 I 8 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=203322.000000 s mm10.chr1_GL456221_random 74162 103 + 206961 CAGCAG-------------------GGCC---------------------AGTGGACCACAGACTAAG-GATACGCTAAGTTCATCTGAGC-----------------------------------CCTGCCAGGGCT----CAAG-CATTGCTCTGGCTGTGCAGTTCTGTGGTTTTGTTCTG s rn5.chr9 29209331 97 - 121549591 CAGCAG-------------------GGCC---------------------AGGAGAAAGGGACTTAGG-GATGCCCTAAGTTCATCTGAGC-----------------------------------------AGGACT----TAAG-CGTCTCCGTGGCTGTGCAGTTCCGTGGTTTTGTTCTG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 815 163 - 13480 CAGCAGTACTTGAATCCAATCTCCTGGCC------------ACATGGA--ATTAGGGCAGGGCTTCGGTGATATGTGAAACTTGTCTGAGAACCAAAAAGCCCCTGATGCAGCTGTGTTG--CTGGCCTGGCTGGGCT----TCAG-CATCTTCCTGGACCTGTGGCTGTGTGATTTTATTCTG i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322665 106 + 10418462 CAGCTG-------------------TGCC-----------------------------------TGGGCCCTCCCCCTGGCCCCTCTGAGAGCCCGAGAGCCA-----------------------CGTGCCTGGGCTGGGATCCA-CGTCCTCCTGCATCTGCTCCTCTCTGATTTTGTTCTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120768 174 - 243199373 CAGCTA-CAGAGGGCCCACTGTCCTGGCAGCATCTGGG-CAATACTAG--GAGAGGCATGGCCTTAAAGGCTATGGTAAGAACATCTGAGAACCATGGGGACCCACACACTGATGTGCCC--CTGACCTGGCTGAGCT----TCAGTCATCTTCCGGGATCTTCAACCTGATGATTTTGTTCTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059495 174 - 247518478 CAGCTA-CAGAGGGCCCACTGTCCTGGCAGCATCTGGG-CAATACTAG--GAGAGGCATGGCCTTAAAGGCTATGGTAAGAACATCTGAGAACCATGGGGACCCACACACTGATGTGCCC--CTGACCTGGCTGAGCT----TCAGTCATCTTCCAGGATCTTCAACTTGATGATTTTGTTCTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221315 174 - 131632457 CAGCTA-CAGAGGGCCCACCGTCCTGGCAGCATCTGGG-CAATACTAG--GAGAGGCATGGCCTTAAAGGCTATGGTAAGAACATCTGAGAACCATGGGGACCCACACACTGATGTGCCC--CTGACCTGGCTGAGCT----TCAGTCATCTTCCAGGATCTTCAACTTGATGATTTTGTTCTG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843432 174 - 6458163 CAGCTA-CAGAGGACCCACTGTCCTGGCAGCATCCGGG-CAACATTAG--GAGAGGCATGGCCTTAAAGGCTATGCTAAGAACATCTGAGAGCCATGGGGACCCACACACTGATGTGCCC--CTGACCTGGCTGAGCT----TCAGTCATCTTCCAGGATCTTCAACTTGACGATTTTGTTCTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814682 161 - 106825570 --------------CCCACTGTCCTGGCAGCATACAGA-GAACATTAG--GAGAGGCATGGCTTTAAAGGCTGTGCTAAGAACACCTGAAAGCCATGGAGACCCACACACTGATGTGCCC--CTAACCTGGCTGAGCT----TCAGTCATCTTCCAGGATCTTCAACTTGATGATTCTGTTCTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721242 176 - 158406734 CAGCTA-CAGAGGGCCCACTGTCCTGGCAGGATCCTGG-CAACATTAGGAGAGAGGCACGGCCTTAAAGGCAATGTGAAGAACATCTGAGAGGCACGGGGACCCACGCACGGATGTGCCC--CTGACCTGGCTGAGCT----TTGGGTATCTTCCACAATCTTCAACTTGATGGTTTTCTTCTG i calJac3.chr6 C 0 C 0 s equCab2.chr6 66904811 149 - 84719076 ---------------------------CAGCATTTGGGACAGTGCTGG--GAGAAATGTGTTCTCAAAGGCAGAGCTAAGCAAGTCTGAGAGCCAGAGGAACC-ACACTCTGATGTACCCTTCTGGCCTGGCTGAGCT----CAAG-CATCTTTCCAGATCTGCAACTCTGTGATTTTGTTCTG i equCab2.chr6 I 8 I 32 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 35265 175 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=2523.000000 s mm10.chr1_GL456221_random 74265 2 + 206961 AG s rn5.chr9 29209428 2 - 121549591 AG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 978 2 - 13480 GG i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322771 2 + 10418462 GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120942 2 - 243199373 AA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059669 2 - 247518478 GA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221489 2 - 131632457 GA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843606 2 - 6458163 AA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814843 2 - 106825570 GA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721418 2 - 158406734 GA i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 35265 175 + 53618 I e equCab2.chr6 66904960 32 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=-2448.000000 s mm10.chr1_GL456221_random 74267 1 + 206961 -C s rn5.chr9 29209430 1 - 121549591 -C i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 980 1 - 13480 -T i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322773 1 + 10418462 -T i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120944 1 - 243199373 -T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059671 1 - 247518478 -T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221491 1 - 131632457 -T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843608 1 - 6458163 -T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814845 1 - 106825570 -T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721420 1 - 158406734 -T i calJac3.chr6 C 0 C 0 s turTru2.JH490333 35440 1 + 53618 A- i turTru2.JH490333 I 175 I 20 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e equCab2.chr6 66904960 32 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=14696.000000 s mm10.chr1_GL456221_random 74268 6 + 206961 CTTTGT s rn5.chr9 29209431 6 - 121549591 CTTTGT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 981 6 - 13480 CCAATT i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322774 6 + 10418462 CCCTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120945 6 - 243199373 CCCTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059672 6 - 247518478 CCCTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221492 6 - 131632457 CCCTTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843609 6 - 6458163 CCCTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814846 6 - 106825570 CCCTTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721421 6 - 158406734 CCCTTT i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 35441 20 + 53618 I e equCab2.chr6 66904960 32 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=-2962.000000 s mm10.chr1_GL456221_random 74274 10 + 206961 TG-CTA---------TCTAT----- s rn5.chr9 29209437 10 - 121549591 TG-GTA---------TCCAT----- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 987 10 - 13480 CT-AAA---------TACAT----- i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322780 11 + 10418462 TGAAAA---------TGGAT----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120951 19 - 243199373 CC-AAAATTTGAAGTTACTT----- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059678 19 - 247518478 CC-AAAATTTGAAGTTACTT----- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221498 19 - 131632457 CC-AAAATTTGAAGTTACTT----- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843615 19 - 6458163 CC-AAAATTTGAAGTTACTT----- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814852 19 - 106825570 CC-AAAATTTGAAGTTCCTT----- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721427 19 - 158406734 TC-AAAATTTGAAGTTACTT----- i calJac3.chr6 C 0 C 0 s turTru2.JH490333 35461 10 + 53618 ---------------TACTTTCCTC i turTru2.JH490333 I 20 I 6658 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e equCab2.chr6 66904960 32 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=5139.000000 s mm10.chr1_GL456221_random 74284 5 + 206961 GAAGG s rn5.chr9 29209447 5 - 121549591 GTCAT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 997 5 - 13480 TTCCC i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6322791 5 + 10418462 TCCTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120970 5 - 243199373 TCCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059697 5 - 247518478 TCCTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221517 5 - 131632457 TCCTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843634 5 - 6458163 TCCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814871 5 - 106825570 TCCTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721446 5 - 158406734 TCCTT i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66904960 32 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=394323.000000 s mm10.chr1_GL456221_random 74289 134 + 206961 TTCCTGTTCAGGGGTCAAGGTATCTTTACTTCTGAAATAAATGGCGAGGAACAATCTTAATAGAAACCAACCACAATCTATTCAAGGGGACAGTGT-------GTGGAAAGCCAAGGGCCTGA--TGTTG-GGATGAGAGGGAA s rn5.chr9 29209452 134 - 121549591 TTCCTGTTCATGGGTCAAGGTATCATCACTTCCGAAATAAGTGACAAAGAACAGTCTTACTAGAAACCAGCCCCAATCTATTCAAGGGAGCAGTGT-------GTGGAAAGCCAAGGGCCTGG--TGTTG-GGAGGAGGAAGAA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 1002 137 - 13480 TTTCTGTTCACCGCT-GAGACAGTTTTACTTCTGTTATAAATGACAGAGAAGAACC---GACAAAGCCGAGCAGACACCATGCAGAGGAACCACCTATCAGCAATGGAAGGCACAGAGGCTGA--GGCAG-CACAGAGAGCAAA i dipOrd1.scaffold_37788 C 0 I 433 s speTri2.JH393335 6322796 134 + 10418462 TTTCTGTCCACTGGTTGAGATCCTTTGGCTTCTGAAATAAATAATGGAGAAGATTGT--AACAAAACCCATCCCAAGCCGTTCAGAGGAACAGCGT-------GGGGGATGCCGAGGGCCTGGGCTGGTG-GGGTCAGGAGGGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12120975 136 - 243199373 TTTCCATTCACTGGTTGAGACCA-TTTACTTCTGAAATAAATGATGGAGAAGAATCTTAAGAGAAACCCAGCACTAGCCATGCAAGGGAATAGCAT-------GCAGAAAGCCAAGGGTCTGGGGTATTGTGGATGGGAGAGAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12059702 136 - 247518478 TTTCCATTCACTGGTTGAGACCA-TTTACTTCTGAAATAAATGATGGAGAAGAATCTTAAGAGAAACCCAGCACTAGCCATGCAAGGGAATAGCAT-------GCGGAAAGCCAAGGGTCTGGGGTATTGTGGATGGGAGAGAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221522 136 - 131632457 TTTCCATTCACTGGTTGAGACCA-TTTACTTCTGAAATAAATGATGGAGAAGAATCTTAAGAGAAACCTAGCACTAGCCATGCAAGGGAATAGCAT-------GCGGAAAGCCAAGGGTCTGGGGTATTGTGGATGGGAGAGAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843639 137 - 6458163 TTTCCATTCACTGGTTGAGACCATTTTACTTCTGAAATAAATGATGGAGAAGAATCTTAAGAGAAACCCAGCACTAGCCATGCAAGGGAATAGCAT-------GCGGAAAGCCAAGGGTCTGGGGTATTGTGGATGGGAGAGAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12814876 137 - 106825570 TTTCCATTCACTGGTTGAGACCATTTTACTTCTGAAATAAATTATGGAGAAGAATCTTAAGAGAAACCCAGCACTAGCCGTGCAAGGGAATAGCAT-------GTGGAAAGCCAAGGGTCTGGGGTGTTGTGGATGGGAGAGAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721451 137 - 158406734 TCTCCATTCACTGGTTGAGATCATTTGACTTCTGAAATAAATGATGGAGAAGAATCATAAGAGAAACCCAGCACTAGCCATGCAAGGGAATAGCAT-------GTGGAAAGCCAAGGGTCTGGGGTATCGTGGATGGGAGAGAA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66904992 136 - 84719076 TTTCTGTTCACTGATTGAGACCATTTTACTTCTGAAATAAATGATGGAGAAGTATCATAAGAGAAGCCCAGCACTGGCCATGCAGGGGAACAGCAT-------ACAGAAAGCCAAAGGCCTGGGG-ATTGGGGATGGGAGGAAA i equCab2.chr6 I 32 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=156839.000000 s mm10.chr1_GL456221_random 74423 75 + 206961 GATCCTAGGGTGCTCAGATG-GAGGCAGCCGGATCATAGGGTGCAG-------------------TGAAACTTCAGAAGTGAGCAGAAACCAGAA s rn5.chr9 29209586 72 - 121549591 GATCCTAGGGCGGTCAGATA-GATGTGGCCAGATCATAGGATGCAA-------------------TGGAACCTCAGAAGTGAATAGAAACCA--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6322930 59 + 10418462 ---------------AAATGTGGTGTGGCCACGTGGTCAGGTGC---------------------CGAATCTGCAGAAATGAGCAGAAACCAGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12121111 76 - 243199373 ---------------AGCTG-GGTGTGACCAGATCACAGGGTACAA---TAGAAGGCACAGAAGCTGACTCTGCAGAAATGAGCAGAAACCAGAA i hg19.chr2 C 0 I 204 s panTro4.chr2B 12059838 76 - 247518478 ---------------AGCTG-GGTGTGACCAGATCACAGGGTACAA---TAGAAGGCACAGAGGCTGACTCTGCAGAAATGAGCAGAAACCAGAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221658 76 - 131632457 ---------------AGCTG-GGTGTGACCAGATCACAGGGTACAA---TAGAAGGCACAGAAGCTGACTCTGCAGAAATGAGCCGAAACCAGAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843776 76 - 6458163 ---------------ACCTG-GGTGTGACCAGATCACAGGGTACAA---CAGAAGGCACAGAAGCTGACTCTGCAGAAGTGAGCAGAAACCAGAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12815013 76 - 106825570 ---------------AGCTG-GGTGTGACCAGATCACAGGGTACAA---TAGAAGCCGCAGAAGCTGACTCTGCAGAAATGAACAGAAACCAGAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721588 76 - 158406734 ---------------AGCTG-AGTGTGGCCAGACCACACGGTATAA---TAGAAGGCACAGAAGCTGACTCTGCAGAAATGAGCAGAAACCAGAA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66905128 76 - 84719076 ----------------GTTT-GGTGTGGCCTGATCATAAGGTGCAAGGCTTGGAGGCATGGAGTCTGA--CTGCAGAGATGAACAGAAACCAGAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 1139 433 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=55422.000000 s mm10.chr1_GL456221_random 74498 29 + 206961 GACTAAggtcccaatagaacctggtgagg s rn5.chr9 29209658 26 - 121549591 ---TAAGGTCCCAATGGAACCTGGTAAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6322989 29 + 10418462 TATAAATATTTTGATCCACCTTGCTAAGG i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 12059914 29 - 247518478 TATAAATGTCCTAATACACCCTGCTAAGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221734 29 - 131632457 TATAAATGTCCTAATACACCCTGCTAAGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2843852 29 - 6458163 TATAAATATCCTAATACACCCTGCTAAGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12815089 28 - 106825570 TATAGATGTCCTAATACA-CCTGCTGAGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721664 29 - 158406734 TATGAATGTCCTAATATATCCTGCTAAGG i calJac3.chr6 C 0 C 0 s equCab2.chr6 66905204 29 - 84719076 TGTTAATGTCCTAATACAGCATGCTAAGG i equCab2.chr6 C 0 I 208 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 1139 433 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e hg19.chr2 12121187 204 - 243199373 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=5096.000000 s mm10.chr1_GL456221_random 74527 2 + 206961 aa s rn5.chr9 29209684 2 - 121549591 AA i rn5.chr9 C 0 I 462 s speTri2.JH393335 6323018 2 + 10418462 AA i speTri2.JH393335 C 0 I 416 s panTro4.chr2B 12059943 2 - 247518478 AA i panTro4.chr2B C 0 I 156 s gorGor3.chr2B 12221763 2 - 131632457 AA i gorGor3.chr2B C 0 I 156 s nomLeu2.GL397366 2843881 2 - 6458163 AA i nomLeu2.GL397366 C 0 I 155 s rheMac3.chr12 12815117 2 - 106825570 AA i rheMac3.chr12 C 0 I 156 s calJac3.chr6 11721693 2 - 158406734 AA i calJac3.chr6 C 0 I 151 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 1139 433 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66905233 208 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e hg19.chr2 12121187 204 - 243199373 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 74529 500 + 206961 gccgggcgtggtggcgcacccttttaatcccagcactcgggaggcagaggcagggggatttctgagtttgaggccggcctggtctacaaagtgaCAagcaaaacatcatcagaagtcgttttgttgctgcattcatttagactaactgtagtaggttttactctagagcccgtggtctatctagtcatgtgctgttgaccacattaccagtgttgcgtgtgggtcccatttcataaaacagtcctcacatccaatcaaaaggtgattggtcactcccataacacttgtgccagcattgcatcagcaagtacatcgagtaagcaggtcactgttgtagctcgcagcattcctagctgggtgacattgatgataactcctcctctggtagtgtccatagaaccttccaacactatgaacactggtcagtagggatgaagcttctagctgagcaacagctgggttgcttcatgtctgtttctccctcagcaatagggtcttac e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 1139 433 - 13480 I e speTri2.JH393335 6323020 416 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12815119 156 - 106825570 I e equCab2.chr6 66905233 208 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2843883 155 - 6458163 I e gorGor3.chr2B 12221765 156 - 131632457 I e panTro4.chr2B 12059945 156 - 247518478 I e hg19.chr2 12121187 204 - 243199373 I e calJac3.chr6 11721695 151 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29209686 462 - 121549591 I a score=10846.000000 s mm10.chr1_GL456221_random 75029 230 + 206961 cagcaggttgtggagggtcatcgatattgttgccctgtaatgtttaggggataggaggaacctctgggattcctttagccaataactccaaaaagatggactgttttccattcctggtacttggtagcatatggtaacttatcagggcattgtctccctcattatatggtaactccatttaaataacatttatatatgtatatattttagggaccttctacagtagtagg s rn5.chr9 29210148 189 - 121549591 CACTACgttgtggagggtagtcaatagcattggcctgtaatgtttagggg-taggaggaacctctgg--------------------------------accattttacatttctg--------tatcctatggtatcttattagggcattatctccctcactgtatgatagctccctttaaattccatttatatacgtatatattttagggaccttctacagtagtaga i rn5.chr9 I 462 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 1139 433 - 13480 I e speTri2.JH393335 6323020 416 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12815119 156 - 106825570 I e equCab2.chr6 66905233 208 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2843883 155 - 6458163 I e gorGor3.chr2B 12221765 156 - 131632457 I e panTro4.chr2B 12059945 156 - 247518478 I e hg19.chr2 12121187 204 - 243199373 I e calJac3.chr6 11721695 151 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=273.000000 s mm10.chr1_GL456221_random 75259 1 + 206961 t s rn5.chr9 29210337 1 - 121549591 t i rn5.chr9 C 0 C 0 s rheMac3.chr12 12815275 1 - 106825570 T i rheMac3.chr12 I 156 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 1139 433 - 13480 I e speTri2.JH393335 6323020 416 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66905233 208 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2843883 155 - 6458163 I e gorGor3.chr2B 12221765 156 - 131632457 I e panTro4.chr2B 12059945 156 - 247518478 I e hg19.chr2 12121187 204 - 243199373 I e calJac3.chr6 11721695 151 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=910.000000 s mm10.chr1_GL456221_random 75260 1 + 206961 t s rn5.chr9 29210338 1 - 121549591 t i rn5.chr9 C 0 C 0 s panTro4.chr2B 12060101 1 - 247518478 T i panTro4.chr2B I 156 C 0 s gorGor3.chr2B 12221921 1 - 131632457 T i gorGor3.chr2B I 156 C 0 s nomLeu2.GL397366 2844038 1 - 6458163 T i nomLeu2.GL397366 I 155 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 1139 433 - 13480 I e speTri2.JH393335 6323020 416 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12815276 0 - 106825570 C e equCab2.chr6 66905233 208 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e hg19.chr2 12121187 204 - 243199373 I e calJac3.chr6 11721695 151 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=25642.000000 s mm10.chr1_GL456221_random 75261 18 + 206961 tctatgtgGTCAACCCAT s rn5.chr9 29210339 18 - 121549591 tctatgtggTCAACACAT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 1572 17 - 13480 TTTATGT-GTTAAAACAT i dipOrd1.scaffold_37788 I 433 C 0 s panTro4.chr2B 12060102 17 - 247518478 TTTATGT-GTGAAACCAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221922 17 - 131632457 TTTATGT-GTGAAACCAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844039 17 - 6458163 TTTATGT-GTGAAACCAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12815276 16 - 106825570 -TTCTGT-GTGAAACCAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721846 17 - 158406734 TTTATGT-GTGAAATCGT i calJac3.chr6 I 151 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6323020 416 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66905233 208 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e hg19.chr2 12121187 204 - 243199373 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=44379.000000 s mm10.chr1_GL456221_random 75279 24 + 206961 TTTGGGTGATGGACTGGGGACTAA----------- s rn5.chr9 29210357 24 - 121549591 TTTTGGTGTTGGATTGGGGACTAA----------- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 1589 32 - 13480 T---GGTAATTGATCTGAGACTAAATGCAGTTATG i dipOrd1.scaffold_37788 C 0 C 0 s hg19.chr2 12121391 35 - 243199373 TTTTGGTATTAGATCAGGGCTTAGATGCACTTATT i hg19.chr2 I 204 C 0 s panTro4.chr2B 12060119 34 - 247518478 -TTTGGTATCAGATCAGGGCTTAGATGCACTTATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221939 34 - 131632457 -TTTGGTATCAGATCAGGGCTTAGATGCACTTATT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844056 34 - 6458163 -TTTGGTATTAGACCAGGGCTTAGATGCAGTTATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12815292 34 - 106825570 -TTTGGTATTAGATCGGGGCTTAGATGCAGTTATT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721863 25 - 158406734 -TTTGGTATTAGATCAGGGCTTAGAT--------- i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6323020 416 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66905233 208 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=239046.000000 s mm10.chr1_GL456221_random 75303 117 + 206961 ATAGCACTGAGTGCCTGAA-TAAATCAAAGTCAG---AAGAGGCCACAAATGGATGCGTGTGGTGATGAGCCTGTTCTGTGCACCCGGGGAA--ACCAGTAACTCTCCCTCTG-GTCCCGTGCG s rn5.chr9 29210381 117 - 121549591 GTAGCACTGAGTGCCCAAA-TAAATAAAAGTCAC---AAGAGGCCACAGGTGAACACTTGTGGTGATGAACCCGTTCTGTGCACCTGGGAAA--ATCAGTAATTCTGCCTCCG-GTCCTGTGGG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 1621 114 - 13480 ATAGCACTGCATGCCAGAT-TGAATCAATGAAACAGAAAGGGGCCACATATAGACAGCTACAGTAATGGTTCTG---TGTGCGCTAGGGGAG-----GATGGCTGGGCGCCCT-GTCCTGTTAG i dipOrd1.scaffold_37788 C 0 C 0 s hg19.chr2 12121426 124 - 243199373 GTAGCACTCAATGCCCAAACCAGATAAATAAAATATTAAGGGGCCACAAATGGATAATGATGACAATGAATCAGTTCTCTGCACCTGGGGGACAATGAATAGCTCCATGCCCCCATCCTATTGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060153 124 - 247518478 GTAGCACTCAATGCCCAAACCAGATAAATAAAATAGAAAGGGGCCACAAATGGATAATGATGACAATGAATCAGTTCTCTGCACCTGGGGGACGATGAATAACTCCATGCCCCCATCCTATTGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12221973 124 - 131632457 ATAGCACTCAATGCCCAAACCAGATAAATAAAATATTAAGGGGCCACAAATGGATAATGATGACAATGAATCAGTTCTCTGCACCTGGGGGACAATGAATAACTCCATGCCCCCATCCTATTGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844090 124 - 6458163 GAAACACTCAATGCCCAAACCGGATAAATAAAATAGAAAGGGGCCACACATGGATAACGATGACAATGAATCAGTTCTCTGTACTTGGGGGACAATTAATAACTCCATGCCCCCATCCTATTAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12815326 124 - 106825570 GTGGCACTCAATGCCCAAACCAGATAAATAAAATAGAAATGGGCCACAAATGGATAATGATGACAATGAGTTAGTTCTCTGCACCTGGGGGACAATGAATAACTCCATGGCCCCATCCTATTGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721888 105 - 158406734 ------CGCAATGCCCAAACT--ATAAATAAAATACAAAGGGGCTGCATGTGGATAATGATGACGGTGAATCAGTTCTATGCCCCTGGGAGACAATGAATAACTCCATGTCTC----------- i calJac3.chr6 C 0 C 0 s equCab2.chr6 66905441 123 - 84719076 ATAGCACTGGATGCCCAAATCAAATACATAAAATAGAAGGAGGCCACAAATGGACAATGATGATGATGAATTGGATCTATGCACCCGGGGGACAATAAATAACTCTATGCCCT-GGCCTATTGG i equCab2.chr6 I 208 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6323020 416 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=7377.000000 s mm10.chr1_GL456221_random 75420 3 + 206961 GAA s rn5.chr9 29210498 3 - 121549591 GAA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 1735 3 - 13480 AAG i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6323436 3 + 10418462 gaa i speTri2.JH393335 I 416 C 0 s hg19.chr2 12121550 3 - 243199373 AAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060277 3 - 247518478 AAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222097 3 - 131632457 AAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844214 3 - 6458163 AAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12815450 3 - 106825570 AAG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66905564 3 - 84719076 AAG i equCab2.chr6 C 0 I 2 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e calJac3.chr6 11721993 0 - 158406734 C e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=-777.000000 s mm10.chr1_GL456221_random 75423 2 + 206961 AG s rn5.chr9 29210501 2 - 121549591 AG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 1738 2 - 13480 TC i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6323439 2 + 10418462 aa i speTri2.JH393335 C 0 C 0 s hg19.chr2 12121553 2 - 243199373 GC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060280 2 - 247518478 GC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222100 2 - 131632457 GC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844217 2 - 6458163 GC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12815453 2 - 106825570 GC i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66905567 2 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e calJac3.chr6 11721993 0 - 158406734 C e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=405064.000000 s mm10.chr1_GL456221_random 75425 160 + 206961 ATG--AACTAGGC-----AATCCTGTCTGCCAGATAACTTCTGAGTCTTCGGGGTCCTGAGTCTTTGTGTTC-CTTTGCTAATTCCAGTTGGT---------------TATACCTACGAAGAGAAAAACAGATCCCCACTGACCCTGCTTGAAGACCTGGCCAACCCAGCAGAAGGGTGCTCC s rn5.chr9 29210503 157 - 121549591 ATA--CAGGAGGC-----AGTCCTATCTGCCAGATAACTTCTGAATCTCCGGGGTCCTGA---CATGTGCTC-CTTTGCTAATTCCAGTTGGC---------------AATGCCTATGAAGGGAGAAACAGACCCGCACCAACCCTACTTGGAGCCTCAACCAACCCAGCAGAAGGGTGCTCC i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 1740 141 - 13480 ATG--CATTAACCCCTAGGATCC--CCTTCCTGGACAGTCCTGAGTCTCGAGGGTGCTGA-----TGTGTTCTCTTCCCCAACCCCAGTTGTT---------------GCGTCCTATGAGCACTGGAGCAGAACCACACCAA------------------GTGGCTCAGTAGAAGAGAGCTCC i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6323441 131 + 10418462 aag--aaaga--------aaTCCCATTCCTTAGATACTTT-----------GGGTCCTGA---TGTGTTCTC-CTTCATCAATCCCAGTGGGT---------------GCTTCCTATGGACAGAGGAGCAGAACCACAGTCCTGCCACTCAAAGC---------CCCAGCAGAAAGGTAC--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12121555 156 - 243199373 ATG--TATTAAGA-----AATCCCCTTCCCCAAGTAA-TTCTGAGTCTCCAGGGTACTGA---TGTGTGTCC-CTTCACCAATCCCAGTTGGT---------------GCTTCCTATGAATGGCAGAGCAGAGACACACCAATCCTACTTGAAGCCCCAACTGGCCTAGCAGAAGGAAGCTCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060282 156 - 247518478 ATG--TATTAAGA-----AATCCCCTTCCCCAAGTAA-TTCTGAGTCTCCAGGGTACTGA---TGTGTGTCC-CTTCACCAATCCCAGTTGGT---------------GCTTCCTATGAACGGCAGAGCAGAGACACACCAATCCTACTTGAAGTCCCAACTGGCCTAGCAGAAGGAAGCTCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222102 156 - 131632457 ATG--TATTAAGA-----AATCTCCTTCCCCAAGTAA-TTCTGAGTCTCCAGGGTACTGA---TGTGCGTCC-CTTCACCAATCCCAGTTGGT---------------GCTTCCTATGAACGGCAGAGCAGAGACACACCAATCCTACTTGAAGCCCCAACTGGCCTAGCAGAAGGAAGCTCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844219 156 - 6458163 ATG--TATTAAGA-----AATCCCCTTCCCCAAGTAA-TTCTGAGTCTCCAGGGTACTGA---TGTGTGTCC-CTTCACCAATCCCAGTTGGT---------------GCTTCCTATGAATGGCAGAGCAGAGACACACCAATCCTACTTGAAGCCCCAGCTGGCTTAGCAGAAGGAAGCTCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12815455 156 - 106825570 ATG--AATTAAGA-----AATCCCCTTCCCCAAGTAA-TTCTGAGTCTCCAGGGTACTGA---TGTGTGTCC-CTTCACCAATCCCAGTTGGC---------------GCTTCCTATGAACAGCAGAGCAGAGACACACCAGTCCTACTTGAAGCCCCAACTGGCCTAGCAGAAGGAAGCTCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11721993 159 - 158406734 ------------------AATCCCCTTCCCCAAGTAA-TTCTGAATCTACAGGATACTGA---TGTATGTCC-C-TCACCAATCCCAGTTGGTGAACAGCAGAGCAGAGCTTCCTGTGAACAGCAGAGCAGAGGCACACCAATCCTACTTGAAGCCCCAACTGACCTAGCAGGAGGAAGCTCC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66905569 163 - 84719076 ATGCTTAGTAAAGACGCCAAACCCCTTCCCCAAATAA-TTCTGAGTCTCCAGGGTGTTGA---TGTGTGCTC-CTTTGCCAATCCCAGTTGTC---------------ACTTCCTATGGAGGAGGGAGCAGAACCACGCCCATCCTCCTGGAAGTCCCAGCCAACCCAGCAGAAAGGAGCTCC i equCab2.chr6 I 2 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=15376.000000 s mm10.chr1_GL456221_random 75585 8 + 206961 CTTCAGAC s rn5.chr9 29210660 8 - 121549591 TTTCAGAC i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 1881 8 - 13480 CTGCAGAC i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6323572 2 + 10418462 ------AC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12121711 8 - 243199373 CTCCATAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060438 8 - 247518478 CTCCATAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222258 8 - 131632457 CTCCATAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844375 8 - 6458163 CTCCATAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12815611 8 - 106825570 CTCCGTAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11722152 8 - 158406734 CTGCCTAC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66905732 8 - 84719076 CACAAGGC i equCab2.chr6 C 0 C 0 s echTel1.scaffold_187355 3083 8 + 8640 CACCAAAG i echTel1.scaffold_187355 N 0 N 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=563856.000000 s mm10.chr1_GL456221_random 75593 184 + 206961 ACTGCTGCCACCA-CCCGACCCCAGATATCGCTGCCAAGTCATCTGTCCTCAGCACCGAGAGTCTGTGACCCCAGAGCAACCACACAGCCAATCATTGAGATCCTGGATGAGCAGCCCAGTCCTTCTCCCCGGGGCTGTGCCTCTCCCTGGCTGCATTCAGGAAGGAAAAACCACTCCAGGCAAG s rn5.chr9 29210668 184 - 121549591 TCTGCTGCCACAGCCCCGATCCCAGGCATTGCCACCAAGTCATCTGTCCTCTGGACTGAGAATCCGTGACCCCGGAACAACCTCACTGCAAATCACTGAGATCCTGGATGAGCAGCCCAGCCCTTCCCACC-CAGCTGCTCCTCTCCCTGGCTACATTCGGGAAGGAAAAACCACTCCAGGCAAG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 1889 181 - 13480 CCCGCAGCTCCCG---GGGCCCCATCCACCCACCCTGAGCTCTCTGCTGTGTACGCCTGGAGTCACTGAGCTCCAAGCAGCCTCGGAGCAAATCAACAAGATCCTACATGAACGGCCCAGCCCTTCCAACC-CTGCCCTGCCTCTCCCTGGACTCATCCAGGAAGGACAAAACAGTCCAGGTAAG i dipOrd1.scaffold_37788 C 0 I 5181 s speTri2.JH393335 6323574 184 + 10418462 GCTGCTGCCGCTGATCCCGCCTCACCCTCCCTCACTGAGTCATCTGTCCTGTGCGCCCAGAGTCAGTGAGCCCAGAGCAGCCTTGCAGCAAATCCACGTGACCCTGGATGAACTGCCCAGCACCTCTGAGC-CTGCCACGCCTCCCCCTGACCTAATCCAGGAAGGAAGAAGCACTCCAGGTGAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12121719 184 - 243199373 CCCACTGGCGCTGCCCCCACCACAACCCCCTCAACCAAGCTGTTCACCCTGTGCGCCAAGAGTCAGTGAGCCTGGAACATCCTCCCAGCAAAGCGATGAGATCCTGAGTGAGTCGCCCAGCCCATCTGACC-CTGTCCTGCCTCTCCCTGCACTCATCCAGGAAGGAAGAAGCACTTCAGGTGAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060446 184 - 247518478 CCCACTGGCGCTGCCCCCACCACAACCCCCTCAACCAAGCTGTTCACCCTGTGCGCCAAGAGTCAGTGAGCCTGGAACATCCTCGCAGCAAAGCGATGAGATCCTGAGTGAGTCGCCCAGCCCATCTGACC-CTGTCCTGCCTCTCCCTGCACTCATCCAGGAAGGAAGAAGCACTTCAGGTGAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222266 184 - 131632457 CCCACTGGCGCTGCCCCCACCACAACCCCCTCAACCAAGCTGTTCACCCTGTGCGCCAAGAGTCAGTGAGCCTGGAACATCCTCGCAGCAAAGTGATGAGATCCTGAGTGAGTCGCCCAGCCCATCTGACC-CTGTCCTGCCTCTCCCTGGACTCATCCAGGAGGGAAGAAGCACTTCAGGTGAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844383 184 - 6458163 CCCACTGGCGCTGCCCCCACCACAACCCCCTCAACCAAGCTGTTCACCCTGTGCGCCAAGAGTCAGTGAGCCTGGAACATCCTCGCAGCAAAGTGATGAGATCCTGAGTGAGTCGCCCAGCCCATCTGACC-CTGTCCTGCCTCTCCCTGGACTCAACCAGGAAGGAAGAAGCACTTCAGGTGAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12815619 184 - 106825570 CCCACTGGCGCTGCCCCCACCACAACCGCCTCAACCAAGCTCTTCACCCTGTGCGCCAAGAGTCAGTGAGCCTGGAACATCCTCGCAGCAAAGCGATGAGATCCTGAGTGAGTCGCCCAGCCCATCTGACC-CTGTCCTGCCTCTCTCTGGACTCATCCAGGAAGGAAGAAGCACTCCAGGTGAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11722160 184 - 158406734 CCTGCTGCCGCTGCCCCCACCACAAACCCCTCAACCAAGCTGTTCATCCTGTGCACCAAGAGTCAGAGAGCCTGGAACATCCTCACAGCAAAGTGATGAGATCCTGAGTGAATCACCCAGCCCATCTGACC-GTACCCTGCCTCTTCCTGGACTCATCCAGGAAGGAAGGAACTCTCCAGGTGAG i calJac3.chr6 C 0 C 0 s equCab2.chr6 66905740 184 - 84719076 CCTGCTGCCGCTGCCCCCAACTCAACACCCTCCACCGAAAGGCCCACCCTGTGCGCCCAGAGTCAGTGAGCCTGGAGCATCCACACAACACAGTGTTGAGATTCCGGATGAGCCACCCAGCCCTTCTGGCC-CTGCTGTGGCTCGCCCAAAAGTCGCCCAAGAAGAAAGGATCACTCCAGGTAAG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=429458.000000 s mm10.chr1_GL456221_random 75777 205 + 206961 CCACAGATCCAGCCTGTCTGT---------------CCTACCTAGA-----GGCT-TGTTGTCCATTAGAACCCCAGATTGCCGTCTT--TTGTTGACCTGTTCCTTTCTCTGCATCCACCCATACACA-----ACCCTCTCTAAGAAAATCACAAGCGCTGCC-AGTGACCAGGGAGG--CCCAGATGCTAGAGCATCTTCTTCCTATTCCTG-GACACTCCTG-CTTCT----GCCC-------TTG s rn5.chr9 29210852 230 - 121549591 AAACAGAGCCCTCCTGTCTGTCCAACAGCCTGTAACCCTACCTAGGATGCTGGCT-TCCTGTCAATTAGAACCCCAAATTGCTGTCTT--TTGTTGATCTGTTCCTTTCTATGCAGCCACCTTCATACA-----ACCCTTTCTAAGAAAATCGCAAGTGCTGCC-AGTGGCCCGGGAGG--CCCGGATCCCAGAGCATCTTCTTCCTAAGCCTG-GACGCTCCGG-CTTCT----GCCCTT--CCTTTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6323758 235 + 10418462 AAGCAGACCCTGCCCAGCACCCTTGTATCC------CCAGCCTAGC--CCACACA-TGCCGTGGGGCTAGATCCCAGGGTCCTGCCCTTATAGACCATCTGGTCCTTTCCATGCACCCCTCTGCCCACA--CAGACCTTTCCAAAAAGGATCCCAAGCTCCGCC-AGGGGGCACGATGGGCCCTGGAGCCCAGGACACCTGCTTCCCGTTCCTG-GACATCCCAA-CTTTCCAAAGCCCCTGGGCCTTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12121903 227 - 243199373 AAACAGATCCCATCCAACACCTGTATATCC------TCAGCCTAAGGTGCCTGTG-CCATGTTGCCGCCAATCCCAGCATCTTGACTT--TTATTGTCCTAGTTCTTCTCTTGCACCCATCTACCCAAACACAACCCTTTTCAAGAGGGATTATGAGCACTGCC-GGGGGGTGGGTAAGA-CCTAGAGTCCAGAACACCTGCTTCCCACTCCCGGGACATTCCAACCCTCT----GCCC-------TTG i hg19.chr2 C 0 I 7 s panTro4.chr2B 12060630 227 - 247518478 AAACAGATCCCATCCAACACCTGTATATCC------TCAGCCTAAGGTGCCTGTG-CCATGTTGCCTCCAATCCCAGCATCTTGACTT--TTATTGTCCTAGTTCTTCTCTTGCACCCACCTACCCAAACACAACCCTTTTCAAGAGAGATTACGAGCACTGCC-GGGGGGTGGGTAAGA-CCTAGAGTCCAGAACACCTGCTTCCCACTCCCGGGACATTCCAACCCTCT----GCCC-------TTG i panTro4.chr2B C 0 I 134 s gorGor3.chr2B 12222450 227 - 131632457 AAACAGATCCCATCCAACACCTGTATATCC------TCAGCCTAAGGTGCCTGTG-CCATGTTGCCTCCAATCCCAGCGTCTTGACTT--TTATTGTCCTAGTTCTTCTCTTGCACCCACCTACCCAAACACAACCCTTTTCAAGAGGGATTATGAGCACTGCC-GGGGGGTGGGTAAGA-CCTAGAGTCCAGAACACCTGCTTCCCACTCCCGGGACATTCCAACCCTCT----GCCC-------TTG i gorGor3.chr2B C 0 I 132 s nomLeu2.GL397366 2844567 228 - 6458163 AAACAGATCCCATCCAACACCCATATAGCC------TCAGCCTAAGGTGCCTGTG-CCATGTTGCCTCCAATCCCAGCAGCTTGACTT--TTATTGTCCTAGTTCTTCTCTTGCACCCACCTACCCATACACAACCCTTTTCAAGAGGGATTATGAGCACTGCCAGGAGGGTGGGTAAGA-CCTAGAGTCTAGAACACCTGCTTCTGACTCCTGGATCATTCCAACCCTCT----GTCC-------TTG i nomLeu2.GL397366 C 0 I 131 s rheMac3.chr12 12815803 227 - 106825570 AAGCAGATCCCATCCAACACCCGTATATCC------TCAGCCTAAGGTGCCTGTG-CCATGTTGCCTCCAATCCCAGCGTCTTGACTT--GTATTGTCCTAGTTCTTCTCTTGCACCCACCTACCCATACACAACCCTTTTCAAGAGGGACTATGAGCACTGCC-GGGGAGTGGGTAAGA-CCTAGAGTCTAGAAAACCTGCTTCCCACACCTGCGACATTCCAACCTACT----GCCC-------TTG i rheMac3.chr12 C 0 I 131 s calJac3.chr6 11722344 228 - 158406734 AAACAGATCCCATCCAACACCTGTATATCC------CCAGCATAGGGCACCTGTG-CCATGTTGCCTCCAATCCCAGCATCTTGTCTT--TTATTGTCCTAGTTCTTCCCCTACACCCACCTGCCCATACACAGCCCTTTTTGAGGGGAATTATGAGCACTGCCAGGAGGCTGGGTAAGA-CCTAGAGTCTAGAACTCCTGCTTCCCACTCCTGGGACAGCCCAACCCTCT----GCAC-------TTG i calJac3.chr6 C 0 I 7 s equCab2.chr6 66905924 225 - 84719076 AAACAGACCGTGTCCAACACCTGTGCATCT------CCCACCTAGAGTGCCTGGGACCATGT---CTAGAACGACAGGGTCCCATCTTT-TTGTTGATCTGGTCCTTCCCATGCACCCACCTGC-CATTCACAGCCCTGTCCAAGATGGATTACAGGCACTGCC-AGGGGCCTGGGTAGG-CCTAGAGCCCAGAACATCTGCTTCCCACCCCTGGAACAGCCGTACTCTCT----GCCC-------TTG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=443.000000 s mm10.chr1_GL456221_random 75982 1 + 206961 G s rn5.chr9 29211082 1 - 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6323993 1 + 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122137 1 - 243199373 A i hg19.chr2 I 7 C 0 s calJac3.chr6 11722579 1 - 158406734 A i calJac3.chr6 I 7 C 0 s equCab2.chr6 66906149 1 - 84719076 G i equCab2.chr6 C 0 I 18 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816030 131 - 106825570 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2844795 131 - 6458163 I e gorGor3.chr2B 12222677 132 - 131632457 I e panTro4.chr2B 12060857 134 - 247518478 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=5897.000000 s mm10.chr1_GL456221_random 75983 18 + 206961 TACTTCACCTTTCCTGAG s rn5.chr9 29211083 18 - 121549591 TGCTTCACCTTTCCTGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6323994 18 + 10418462 TGCTCCATCTATCCTGGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122138 11 - 243199373 TGCTCTATCTG------- i hg19.chr2 C 0 C 0 s calJac3.chr6 11722580 18 - 158406734 TGCTCTGTCTCCCCCGGG i calJac3.chr6 C 0 I 105 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816030 131 - 106825570 I e equCab2.chr6 66906150 18 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2844795 131 - 6458163 I e gorGor3.chr2B 12222677 132 - 131632457 I e panTro4.chr2B 12060857 134 - 247518478 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=1471.000000 s mm10.chr1_GL456221_random 76001 10 + 206961 CCTTTAGGCc s rn5.chr9 29211101 10 - 121549591 CCTTCAGACc i rn5.chr9 C 0 C 0 s speTri2.JH393335 6324012 10 + 10418462 CATTTTGGTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122149 9 - 243199373 -CCCCAGGCA i hg19.chr2 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816030 131 - 106825570 I e equCab2.chr6 66906150 18 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2844795 131 - 6458163 I e gorGor3.chr2B 12222677 132 - 131632457 I e panTro4.chr2B 12060857 134 - 247518478 I e calJac3.chr6 11722598 105 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=273.000000 s mm10.chr1_GL456221_random 76011 1 + 206961 a s rn5.chr9 29211111 1 - 121549591 a i rn5.chr9 C 0 C 0 s speTri2.JH393335 6324022 1 + 10418462 A i speTri2.JH393335 C 0 I 2 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816030 131 - 106825570 I e equCab2.chr6 66906150 18 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2844795 131 - 6458163 I e gorGor3.chr2B 12222677 132 - 131632457 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122158 0 - 243199373 C e calJac3.chr6 11722598 105 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=12762.000000 s mm10.chr1_GL456221_random 76012 191 + 206961 gtggttcccaacctacctaatgctactgtgctttaatgcagttccttatattgtggtgaccctcaaccataacgttattttcgttgctgcttcataactgtaattttgctgctgttatgtatcacaatgtaaata-gtttgggagatagaggtttgccaaaggaatcgagacccacaggttgagaaccactg s rn5.chr9 29211112 192 - 121549591 gtggttctcaaccgtcctaatgctactacagtctaatgcagttccttctgttgtggtgatccccaaccatcatgttatttttgcttctgcttcataactgtaattttgctgctgctgtgcatcgcaacgtaaatattttttggagaaagaggtttgcggaagaagtcgaaacccacaggttgagaactgctg i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324023 2 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816030 131 - 106825570 I e equCab2.chr6 66906150 18 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2844795 131 - 6458163 I e gorGor3.chr2B 12222677 132 - 131632457 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122158 0 - 243199373 C e calJac3.chr6 11722598 105 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=6615.000000 s mm10.chr1_GL456221_random 76203 70 + 206961 CTTTGGGC---CATTTTACTCTTC---------TCCCTACAACCCGTGGT--TTTTCCCTCCTCCTTCAGCTGCCAGTAACGAt s rn5.chr9 29211304 66 - 121549591 CTTCAGGC---CATTCC-CCCTCT---------TCCCTGCAACCTGTGGG--TTTTC---CCTCCTTCAGCTGCCAGTAACAAT i rn5.chr9 C 0 M 1183 s hg19.chr2 12122158 84 - 243199373 CTTTTAACATTCACTCTTCTCCCTGACATCCAGTCCCTGCAATCTGTAATAATTTCCTTTCCTCCTTCAGTGACCAATGACAAG i hg19.chr2 C 0 I 7 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324023 2 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816030 131 - 106825570 I e equCab2.chr6 66906150 18 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2844795 131 - 6458163 I e gorGor3.chr2B 12222677 132 - 131632457 I e panTro4.chr2B 12060857 134 - 247518478 I e calJac3.chr6 11722598 105 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 76273 530 + 206961 ttttttattagatattttctttatttacatttcaaatgttatcccctttcctagtttcccctccgaaaatccctctcccccctccccctgctccccaacccacccactcttgcttcctggtcctggcattaccctatactggggcatagaaccttcacaggaccaagggcctctcctcccattgatgaccactaggcaatcctctgctacatatgcagctagagccatgaatcccgccatgtgtactctttgattggtggtttaatcccagggatctctggggctactggttaatttatgttgttgttcctcctatggggctgcaaaccccttcagctccttagatactttctctagcttctccattggggaccctgtgctccgtctaatagatgactgtgtacatccacctctgtattagtcaggcactggcagagcctctcaggagacagctatatcaggctccttcagcaagctcttgttggcatctgcaatagtgtctaggtttggtggttgtttatgggatagat e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324023 2 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816030 131 - 106825570 I e equCab2.chr6 66906150 18 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2844795 131 - 6458163 I e gorGor3.chr2B 12222677 132 - 131632457 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122242 7 - 243199373 I e calJac3.chr6 11722598 105 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=391.000000 s mm10.chr1_GL456221_random 76803 12 + 206961 ccccaggtat----gg s equCab2.chr6 66906168 16 - 84719076 CCCCAGGCATTCTTAG i equCab2.chr6 I 18 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324023 2 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816030 131 - 106825570 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2844795 131 - 6458163 I e gorGor3.chr2B 12222677 132 - 131632457 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122242 7 - 243199373 I e calJac3.chr6 11722598 105 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=2260.000000 s mm10.chr1_GL456221_random 76815 66 + 206961 ----cagtctctgctctga-actttgtctctgtaactccttccctg---ggtattttgttcccccttc-----------------taagaa- s speTri2.JH393335 6324025 77 + 10418462 ----CAGTGTCCTCCCTGACACCTAGTCCCTGTAAC-------CTA---TGATTTTTATTCCTTCTTCAGCGGCCAGTGACGACTTAACAC- i speTri2.JH393335 I 2 C 0 s equCab2.chr6 66906184 68 - 84719076 TATTCACTCCTCTCCCTGGTGCCCTGTCCCTGTAAC-------CTGTAATGATTTTTATTCCTCTCTT-----------------CAATGAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816030 131 - 106825570 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2844795 131 - 6458163 I e gorGor3.chr2B 12222677 132 - 131632457 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122242 7 - 243199373 I e calJac3.chr6 11722598 105 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=-1355.000000 s mm10.chr1_GL456221_random 76881 11 + 206961 -----------------CTGATATGGTC- s speTri2.JH393335 6324102 11 + 10418462 -----------------CTGAAATAACC- i speTri2.JH393335 C 0 I 1 s hg19.chr2 12122249 11 - 243199373 -----------------CCAAAATGAAT- i hg19.chr2 I 7 I 2 s equCab2.chr6 66906252 29 - 84719076 CAATGACAATCTAACATCCCACATAAATG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816030 131 - 106825570 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2844795 131 - 6458163 I e gorGor3.chr2B 12222677 132 - 131632457 I e panTro4.chr2B 12060857 134 - 247518478 I e calJac3.chr6 11722598 105 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=1365.000000 s mm10.chr1_GL456221_random 76892 1 + 206961 A s speTri2.JH393335 6324114 1 + 10418462 A i speTri2.JH393335 I 1 C 0 s nomLeu2.GL397366 2844926 1 - 6458163 A i nomLeu2.GL397366 I 131 C 0 s rheMac3.chr12 12816161 1 - 106825570 A i rheMac3.chr12 I 131 C 0 s calJac3.chr6 11722703 1 - 158406734 A i calJac3.chr6 I 105 C 0 s equCab2.chr6 66906281 1 - 84719076 A i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e gorGor3.chr2B 12222677 132 - 131632457 I e panTro4.chr2B 12060857 134 - 247518478 I e hg19.chr2 12122260 2 - 243199373 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=894.000000 s mm10.chr1_GL456221_random 76893 2 + 206961 -GA s speTri2.JH393335 6324115 2 + 10418462 -GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122262 2 - 243199373 -GG i hg19.chr2 I 2 C 0 s gorGor3.chr2B 12222809 2 - 131632457 -GG i gorGor3.chr2B I 132 C 0 s nomLeu2.GL397366 2844927 2 - 6458163 -GG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12816162 2 - 106825570 -GG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11722704 2 - 158406734 -GG i calJac3.chr6 C 0 C 0 s equCab2.chr6 66906282 2 - 84719076 TG- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e panTro4.chr2B 12060857 134 - 247518478 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9059438 5932 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=398828.000000 s mm10.chr1_GL456221_random 76895 126 + 206961 AAGAAGACCTGCAAAGGATGCCCAGCCCTTCTGCTGGCCCTGTGCAAAGTAACACTGACT-------------------------GGGCTGTGGAGG-----GAGACTATGCACATGCCAAATGAGAGGC-TGTGGTTGCAACCTCAGGAGAAAAAA s speTri2.JH393335 6324117 151 + 10418462 AAGAAGACTCCCAAGAGATGCCCAGCACTCCTCCTGGCGCTGGGCAAGGTAACATTGACCGGGGCTGACTTGGCTTAGCTCCAGGGGGCTGTGAAGG-----GAGAGCGGGCACCTGTCAACTGAGAGGC-CATGGTAGGAACCTTGGACAAAAGAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122264 151 - 243199373 AAGAAGACTCAGAAGAGATGCCCAGCCTCCTCACTAGCACTGTGCAAGGTAACACTGACTGGGGCTGATACCGCTTAGCTCAAGGTGACTGTGAAGG-----GAGAACATGCGTCTGCCAACCAAGAGGC-TATGGTGGGAACCCTGGGAAAAAGAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060991 151 - 247518478 AAGAAGACTCAGAAGAGATGCCCAGCCTCCTCACTAGCACTGTGCAAGGTAACACCGACTGGGGCTGATACCGCTTAGCTCAAGGTGACTGTGAAGG-----GAGAATATGCATCTGCCAACCAAGAGGC-TATGGTGGGAACCCTGGGAAAAAGAA i panTro4.chr2B I 134 C 0 s gorGor3.chr2B 12222811 151 - 131632457 AAGAAGACTCAGAAGAGATGCCCAGCCTCCTCACTAGCACTGTGCAAGGTAACACTGACTGGGGCTGATACCGCTTAGCTCAAGGTGACTGTGAAGG-----GAGAACATGCGTCTGCCAACCAAGAGGC-TATGGTGGGAACCCTGGGAAAAAGAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2844929 151 - 6458163 AAGAAGACTCAGAAGAGATGCCGAGCCTCCTCACTAGCACTGTGCAAGGTAACACCGACTGGGGCTGATACAGCTTAGCTCAAGGTGCCCGTGAAGG-----CAGAACATGCATCTGCCAACCAAGAGGC-TGTGGTGGGAACCCTGGGAGAAAGAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12816164 151 - 106825570 AAGAAGACTCAGAAGAGATGCCCAGCCTCCTCGCTAGCACTGTGCCAGGTAATACCGACTGGGGCTGATACAGCTTAGCTCAGGGTGGCTGTGAAGG-----GAGAACATGCATCTGCCAACCAATAGAC-TATGGTGGGAACCATGGGAAAAGGAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11722706 156 - 158406734 AAGAAGACTCAAAAGAGATGCCCAGCCTCCTCGCTAGCACTGTGCAAGGTAACACTGACTGGGGCTGATACAGCTTAGCTCAAGGTGGATGTGAAGGGAGAAGAGAACACATATCTGCCAACCAAGAGGC-TACGGTGGGAACCCTGGGAAAAAGAA i calJac3.chr6 C 0 C 0 s felCat5.chrC1 9065370 152 - 221441202 AAGAAGACTCACAAGGGGGACCTGGCACTCCGCCTGCCTCTGTGCAAGGTAATGTTGCTTGGGACTGACTTAGTTCAATTCGAGATGGGTATGAGGG-----GCAACCATGCACCTGTCGACCCAGGGGCTTGTGGCAGGAGCCCAGGGAAAAAGAA i felCat5.chrC1 I 5932 T 207 s equCab2.chr6 66906284 152 - 84719076 AAGAAGAATCACACAAGATGCCTGGCACTCCCCCTGCCACTGTGCAAGGTGATGTTGCTTGGGGCTGACTTAGATTAGCTCGAGGTGGTCATGAAGG-----GAAAACACACACCCACAAACCTAGAGGCTTGTGGTAGGAACCCTGGGAGAAAGAA i equCab2.chr6 C 0 I 17 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=21754.000000 s mm10.chr1_GL456221_random 77021 20 + 206961 AGGGGAGAAAAGCAGAGAGG- s speTri2.JH393335 6324268 20 + 10418462 CTGGGGATGACAAGGGGCAG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122415 20 - 243199373 CTGAGCAATACAAAGGAAAA- i hg19.chr2 C 0 I 13 s panTro4.chr2B 12061142 20 - 247518478 CTGGGCAATACAAAGGAAAA- i panTro4.chr2B C 0 I 13 s gorGor3.chr2B 12222962 20 - 131632457 CTGGGCAATACAAAGGAAAA- i gorGor3.chr2B C 0 I 13 s nomLeu2.GL397366 2845080 20 - 6458163 CTGGGCGATACAAAGGAAAA- i nomLeu2.GL397366 C 0 I 13 s rheMac3.chr12 12816315 20 - 106825570 CTGGGCGTGACAAAGGAAAA- i rheMac3.chr12 C 0 I 13 s calJac3.chr6 11722862 20 - 158406734 CTGGGCGTGACAAAGACAAA- i calJac3.chr6 C 0 I 532 s equCab2.chr6 66906453 21 - 84719076 AAAAGAAAGAAACAGAAGAGG i equCab2.chr6 I 17 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=45255.000000 s mm10.chr1_GL456221_random 77041 37 + 206961 -GCTGTCCTTAGAC-TCA------CAGAGCAAACCAAAAGTCAAA s speTri2.JH393335 6324288 41 + 10418462 -GTGGTTCACCAACGTCAG---TGCAAAGCCAAACAACAATCAAA i speTri2.JH393335 C 0 I 100 s hg19.chr2 12122448 43 - 243199373 -CCAATTCACCAAC-GCAGCAATGCAAAACAAACCAACAACCAAA i hg19.chr2 I 13 C 0 s panTro4.chr2B 12061175 43 - 247518478 -CCAATTCACTGAC-ACAGCAATGCAAAACAAACCAACAACCAAA i panTro4.chr2B I 13 C 0 s gorGor3.chr2B 12222995 43 - 131632457 -CCAATTCACCAAC-GCAGCAATGCAAAACAAACCAACAACCAAA i gorGor3.chr2B I 13 C 0 s nomLeu2.GL397366 2845113 43 - 6458163 -CCAATTCACCGAC-GCAGCAATGCAAAACAAACCAACAACCAAA i nomLeu2.GL397366 I 13 I 25 s rheMac3.chr12 12816348 43 - 106825570 -CCAATTCACCAAT-GCAGTAATGCAAAACAAACCAACAACCAAA i rheMac3.chr12 I 13 C 0 s equCab2.chr6 66906474 37 - 84719076 ACTGATGCACTGAC-TGGGCACAG-------GACCGCTTGTCAAG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e calJac3.chr6 11722882 532 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=-31.000000 s mm10.chr1_GL456221_random 77078 1 + 206961 A s equCab2.chr6 66906511 1 - 84719076 G i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324329 100 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816391 0 - 106825570 C e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2845156 25 - 6458163 I e gorGor3.chr2B 12223038 0 - 131632457 C e panTro4.chr2B 12061218 0 - 247518478 C e hg19.chr2 12122491 0 - 243199373 C e calJac3.chr6 11722882 532 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=1365.000000 s mm10.chr1_GL456221_random 77079 1 + 206961 A s hg19.chr2 12122491 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061218 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223038 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12816391 1 - 106825570 A i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66906512 1 - 84719076 A i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324329 100 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2845156 25 - 6458163 I e calJac3.chr6 11722882 532 - 158406734 I e papHam1.scaffold15394 38390 1954 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=12732.000000 s mm10.chr1_GL456221_random 77080 13 + 206961 ---------TACTGGTGTGGGT s hg19.chr2 12122492 13 - 243199373 ---------CACCATTCTGAAT i hg19.chr2 C 0 I 31 s panTro4.chr2B 12061219 13 - 247518478 ---------CACCATTCTGAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223039 13 - 131632457 ---------CACCATTCTGAAT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12816392 13 - 106825570 ---------CACCATTCTGAAT i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 40344 13 + 58077 ---------CACCATTCTGAAT i papHam1.scaffold15394 I 1954 C 0 s equCab2.chr6 66906513 22 - 84719076 TACCACCACAGCCAGTCTGATG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324329 100 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2845156 25 - 6458163 I e calJac3.chr6 11722882 532 - 158406734 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=742.000000 s mm10.chr1_GL456221_random 77093 9 + 206961 CTGGGGTGT s equCab2.chr6 66906535 9 - 84719076 CTGGGATGT i equCab2.chr6 C 0 I 114 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324329 100 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816405 0 - 106825570 C e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2845156 25 - 6458163 I e gorGor3.chr2B 12223052 0 - 131632457 C e panTro4.chr2B 12061232 0 - 247518478 C e hg19.chr2 12122505 31 - 243199373 I e calJac3.chr6 11722882 532 - 158406734 I e papHam1.scaffold15394 40357 0 + 58077 C e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=-2112.000000 s mm10.chr1_GL456221_random 77102 62 + 206961 AGCGCAGTGGAAGATCACTTCCTTGGTAGATGCaaggctcctctctctatgtctctgtctct s panTro4.chr2B 12061232 31 - 247518478 -------TGACAAGTAACCTGCGTAACA------------CTCACACTAG------------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223052 31 - 131632457 -------TGACAAGTGACCTGCGTAACA------------CTCACACTAG------------ i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12816405 13 - 106825570 -------TGACAAGTAACCT------------------------------------------ i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 40357 13 + 58077 -------TGACAAGTAACCT------------------------------------------ i papHam1.scaffold15394 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324329 100 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66906544 114 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2845156 25 - 6458163 I e hg19.chr2 12122505 31 - 243199373 I e calJac3.chr6 11722882 532 - 158406734 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=-116.000000 s mm10.chr1_GL456221_random 77164 53 + 206961 ctgcatctctctctctctctctctctctctctctctctctctctctctctctc s nomLeu2.GL397366 2845181 17 - 6458163 CTGCATAACACTCACAC------------------------------------ i nomLeu2.GL397366 I 25 C 0 s rheMac3.chr12 12816418 15 - 106825570 --GTGTAACACTCACAC------------------------------------ i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 40370 15 + 58077 --GTGTAACACTCACAC------------------------------------ i papHam1.scaffold15394 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324329 100 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66906544 114 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e gorGor3.chr2B 12223083 0 - 131632457 C e panTro4.chr2B 12061263 0 - 247518478 C e hg19.chr2 12122505 31 - 243199373 I e calJac3.chr6 11722882 532 - 158406734 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=-3032.000000 s mm10.chr1_GL456221_random 77217 11 + 206961 ctGTTCTTAG--T s nomLeu2.GL397366 2845198 3 - 6458163 -------TAG--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12816433 3 - 106825570 -------TAG--- i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 40385 3 + 58077 -------TAG--- i papHam1.scaffold15394 C 0 C 0 s calJac3.chr6 11723414 11 - 158406734 CCATTC-TGAAT- i calJac3.chr6 I 532 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324329 100 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66906544 114 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e gorGor3.chr2B 12223083 0 - 131632457 C e panTro4.chr2B 12061263 0 - 247518478 C e hg19.chr2 12122505 31 - 243199373 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=99549.000000 s mm10.chr1_GL456221_random 77228 71 + 206961 ----------------TGACACA---------------TAGCTTATTACAAACTTATAGTTGATGATTTTTCCCTAGCTCCAGAAGCCTTTGAGTCTCAACC s hg19.chr2 12122536 57 - 243199373 ----------------TGACCCT---------------TAGCTGATTCCTCACCCCCACCTGATTAT--------------GGGGGCCTTAGAGTTTCAACA i hg19.chr2 I 31 C 0 s panTro4.chr2B 12061263 57 - 247518478 ----------------TGACCCT---------------TAGCTGATTCCTCACCCCCACCTGATTAT--------------GGGGGCCTTAGAGTTTCAACA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223083 57 - 131632457 ----------------TGACCCT---------------TAGCTGATTCCTCACCCACACCTGATTAT--------------GGGGGCCTTAGAGTTTCAACA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845201 57 - 6458163 ----------------TGACCCT---------------TAGCTGATTCCTCAGCCCCACCTGATTAT--------------GGGGGCCTTTGAGTTTCAACA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12816436 57 - 106825570 ----------------TGACCCT---------------TAGCTGATTCCTCACCCCCACCTGATTAT--------------CGGGGCCTTTGAGTTTCAACA i rheMac3.chr12 C 0 C 0 s papHam1.scaffold15394 40388 57 + 58077 ----------------TGACCCT---------------TAGCTGATTCCTCACCCCCACCTGATTAT--------------CGGGGCCTTTGAGTTTCAACA i papHam1.scaffold15394 C 0 I 165 s calJac3.chr6 11723425 88 - 158406734 TGACAAGTAACCTATGTAACACTCATGCTAGTGACCCTTAGCGGATTCCTCACGCCCACCTGATTAT--------------GGGAACCTTTGAGTTTCAACC i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324329 100 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66906544 114 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=0.000000 s mm10.chr1_GL456221_random 77299 95 + 206961 TTATTCAttcttttctatttcatagtatgtcaagagtagaacccaaggcctactgcctgccagataagcactccaccactgatctacacccctag e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324329 100 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816493 0 - 106825570 C e equCab2.chr6 66906544 114 - 84719076 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2845258 0 - 6458163 C e gorGor3.chr2B 12223140 0 - 131632457 C e panTro4.chr2B 12061320 0 - 247518478 C e hg19.chr2 12122593 0 - 243199373 C e calJac3.chr6 11723513 0 - 158406734 C e papHam1.scaffold15394 40445 165 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=169.000000 s mm10.chr1_GL456221_random 77394 3 + 206961 ccc s equCab2.chr6 66906658 3 - 84719076 CTC i equCab2.chr6 I 114 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324329 100 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816493 0 - 106825570 C e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2845258 0 - 6458163 C e gorGor3.chr2B 12223140 0 - 131632457 C e panTro4.chr2B 12061320 0 - 247518478 C e hg19.chr2 12122593 0 - 243199373 C e calJac3.chr6 11723513 0 - 158406734 C e papHam1.scaffold15394 40445 165 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=82026.000000 s mm10.chr1_GL456221_random 77397 34 + 206961 cTTTGTTTATTTTTAGATGACTCAGATTCTAAGA s speTri2.JH393335 6324429 34 + 10418462 CCTTATCCATTCTTCTTTGGATTGGATTATAAGA i speTri2.JH393335 I 100 C 0 s hg19.chr2 12122593 32 - 243199373 --TTCTTCATTTTTATATGGTTTGGATTCTAAGA i hg19.chr2 C 0 I 1 s panTro4.chr2B 12061320 32 - 247518478 --TTCTTCATTTTTATATGGTTTGGATTCTAAGA i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12223140 32 - 131632457 --TTCTTCATTTTTATATGGTTTGGATTCTAAGA i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2845258 32 - 6458163 --TTCTTCATTTTTGTATGGTTTGGATTCTAAGA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12816493 32 - 106825570 --TTCTTCATTTTTATGTGGTTTGGATTCTAAGA i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11723513 32 - 158406734 --TTCTTCATTTTTATATGGTTTGGATTCTTAGA i calJac3.chr6 C 0 I 1 s equCab2.chr6 66906661 34 - 84719076 CCATATTCATTTTTATATGGTTTGGATTCTAAGA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 40445 165 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=-114.000000 s mm10.chr1_GL456221_random 77431 1 + 206961 C s speTri2.JH393335 6324463 1 + 10418462 A i speTri2.JH393335 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816525 1 - 106825570 I e equCab2.chr6 66906695 0 - 84719076 C e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2845290 1 - 6458163 I e gorGor3.chr2B 12223172 1 - 131632457 I e panTro4.chr2B 12061352 1 - 247518478 I e hg19.chr2 12122625 1 - 243199373 I e calJac3.chr6 11723545 1 - 158406734 I e papHam1.scaffold15394 40445 165 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=256966.000000 s mm10.chr1_GL456221_random 77432 136 + 206961 -CTATATATGCTATTAA---CATTATTAGAAAATATTGTGAAAACTTT--ATGTCTGTTGGACTTA--ATTGAGCTTCCAGACTTGTGCCACTTGACTTCCCTAAAGCATCATTATAAAAATAAAGTTTAGTTATGTTAACTA-----------T s speTri2.JH393335 6324464 134 + 10418462 -CAAT----GCTATGGAAATTATTATTAGAAAATATCATAAAA----------TAAGTTGGACCCA--AGTTAGCTTCTCAACTTTTGTCACTTGTTTTCCCCAAGCCATTTTTATAATGGAA----TTGGCTACATTAAATATTACCGTGGTCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122626 133 - 243199373 -CAAT----GTTATCAA---AATTACTAGAAAAGATGATAAAATGTTTAAAGGTCTGCTAGACCTAATATTTAGCTTCTCAAATTGTATCACTTGTCCTCCCCAAACCATCATCATAATGGAG---TTTGATTACATTAAACG-----------T i hg19.chr2 I 1 I 1 s panTro4.chr2B 12061353 133 - 247518478 -CAAT----GTTATCAA---AATTACTAGAAAAGATGATAAAGTGTTTAAAGGTCTGCTAGACCTAATATTTAGCTTCTCAAATTGTATCACTTGTCCTCCCCAAACCATCATCATAATGGAG---TTTGATTACACTAAATG-----------T i panTro4.chr2B I 1 I 1 s gorGor3.chr2B 12223173 132 - 131632457 -CAAT----GTTATCAA---AATTACTAGAAAAGATGATAAAATGTTTAAAGGTCTGCTAGACCTAATATTTAGCTTCTCAAA-TGTATCACTTGTCCTCCCCAAACCATCATCATAATGGAG---TTTGATTACATTAAATG-----------T i gorGor3.chr2B I 1 I 1 s nomLeu2.GL397366 2845291 133 - 6458163 -CAAT----GTTATCAA---AATTACTAGAAAAGATGGCAAAATGTTTAAAGGTCTGCTAGACCTGATATTTAGCTTCTAAAATGGTATCACTTGTCCTCCCCAAACCGTCATCATAATGGAG---TTTGATTACATTAAATA-----------T i nomLeu2.GL397366 I 1 I 1 s rheMac3.chr12 12816526 131 - 106825570 -CAAT----G--ATCAA---AATTACTAGAAAAGATGATAAAATGTCTACAGGTCTGCTAGACCTGATATGTAGCTTCTAAAATTGTATCACTTGCCCTCCCCAAACCATTGTCATAATGGAG---TTTAATTACATTAAATA-----------T i rheMac3.chr12 I 1 I 1 s calJac3.chr6 11723546 133 - 158406734 -CAAT----ATTACCAA---AATTACTAGAAAAGATGATAAAATAGTTAAATGTCTGCTCGACCTGATATTTAGCTTCTAAAATTGTCCTACTTGTCCTCCCCAAACCATTGTCGTAATGGAA---TTTGGTTACATTAAATA-----------T i calJac3.chr6 I 1 I 1 s equCab2.chr6 66906695 131 - 84719076 ATAAT----GTTATTGA---AATTATTAGAAAAGATGAT-AAATATTTAAAGGTCTGCTGGACCTG--ATTTAGCTTCTAAAACTGTGTCCCTTAGCTCCCCCAAACCATCATTATAAAAGAC---TATGATTACATTAAATA-----------T i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 40445 165 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=2997.000000 s mm10.chr1_GL456221_random 77568 1 + 206961 A s speTri2.JH393335 6324598 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122760 1 - 243199373 A i hg19.chr2 I 1 C 0 s panTro4.chr2B 12061487 1 - 247518478 A i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12223306 1 - 131632457 A i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2845425 1 - 6458163 A i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12816658 1 - 106825570 A i rheMac3.chr12 I 1 C 0 s papHam1.scaffold15394 40610 1 + 58077 A i papHam1.scaffold15394 I 165 I 17 s calJac3.chr6 11723680 1 - 158406734 A i calJac3.chr6 I 1 C 0 s equCab2.chr6 66906826 1 - 84719076 G i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=21223.000000 s mm10.chr1_GL456221_random 77569 16 + 206961 -GCAGGATGTATTACTG s speTri2.JH393335 6324599 15 + 10418462 -GTACTAT-TATTAATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122761 16 - 243199373 -GAATGGTATGATATTG i hg19.chr2 C 0 I 1 s panTro4.chr2B 12061488 16 - 247518478 -GAATGGTATGATATTG i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12223307 16 - 131632457 -GAATGGTATGATATTG i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2845426 16 - 6458163 -GAATGGTATCATATTG i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12816659 16 - 106825570 -GAATGGTATGATATTG i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11723681 16 - 158406734 -GAATGGTATGTTATTG i calJac3.chr6 C 0 I 1 s equCab2.chr6 66906827 17 - 84719076 ACAGTGGAAGATTATTG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 40611 17 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=2395.000000 s mm10.chr1_GL456221_random 77585 1 + 206961 A s speTri2.JH393335 6324614 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122778 1 - 243199373 G i hg19.chr2 I 1 C 0 s panTro4.chr2B 12061505 1 - 247518478 G i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12223324 1 - 131632457 G i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2845443 1 - 6458163 G i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12816676 1 - 106825570 G i rheMac3.chr12 I 1 C 0 s papHam1.scaffold15394 40628 1 + 58077 G i papHam1.scaffold15394 I 17 I 59 s calJac3.chr6 11723698 1 - 158406734 G i calJac3.chr6 I 1 C 0 s equCab2.chr6 66906844 1 - 84719076 G i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=33894.000000 s mm10.chr1_GL456221_random 77586 19 + 206961 CATTGCTG--AAGACTGACAT s speTri2.JH393335 6324615 21 + 10418462 TGTTATTGTCAAAAATGATAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122779 18 - 243199373 ---CATTGTCAAAAATGATAC i hg19.chr2 C 0 I 11 s panTro4.chr2B 12061506 18 - 247518478 ---CATTGTCAAAAATGATAC i panTro4.chr2B C 0 I 11 s gorGor3.chr2B 12223325 18 - 131632457 ---CATTGCCAAAAATGATAT i gorGor3.chr2B C 0 I 11 s nomLeu2.GL397366 2845444 18 - 6458163 ---CATTGTCAAAAATGCTAT i nomLeu2.GL397366 C 0 I 11 s rheMac3.chr12 12816677 18 - 106825570 ---CATTGTCAAAAATGATAT i rheMac3.chr12 C 0 I 11 s calJac3.chr6 11723699 18 - 158406734 ---CATTGTCAAAACTGAGAT i calJac3.chr6 C 0 I 277 s equCab2.chr6 66906845 19 - 84719076 --GTGCTGTCAAAAATGGTAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 40629 59 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=12216.000000 s mm10.chr1_GL456221_random 77605 27 + 206961 TGC-GTTCCAGAG----TTGGGAATAAAAGAG------ s speTri2.JH393335 6324636 32 + 10418462 TGTGGGTTCTGAGCTCTCTGGTACCAGTATAA------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122808 21 - 243199373 -----------AGCTCTCCAGTACTGAGAAGA------ i hg19.chr2 I 11 I 10 s panTro4.chr2B 12061535 21 - 247518478 -----------AGCTCTCCAGTACTGAGAAGA------ i panTro4.chr2B I 11 I 10 s gorGor3.chr2B 12223354 21 - 131632457 -----------AGCTCTCCAGTACTGAGAAGA------ i gorGor3.chr2B I 11 I 10 s nomLeu2.GL397366 2845473 21 - 6458163 -----------AGCTCTCCAGTACTGAGAAGA------ i nomLeu2.GL397366 I 11 I 10 s rheMac3.chr12 12816706 21 - 106825570 -----------AGCTCTCCAGTACTGAGAAGA------ i rheMac3.chr12 I 11 I 9 s calJac3.chr6 11723994 15 - 158406734 -----------A------CAGGATGGGGACAT------ i calJac3.chr6 I 277 I 5 s equCab2.chr6 66906864 38 - 84719076 CATGGATTCTGAGCTCTTCAATACTGAGACTAAAGGGC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 40629 59 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=-3837.000000 s mm10.chr1_GL456221_random 77632 3 + 206961 --TAT s speTri2.JH393335 6324668 3 + 10418462 --TAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122839 1 - 243199373 --T-- i hg19.chr2 I 10 I 1 s panTro4.chr2B 12061566 1 - 247518478 --T-- i panTro4.chr2B I 10 I 1 s gorGor3.chr2B 12223385 1 - 131632457 --T-- i gorGor3.chr2B I 10 I 1 s nomLeu2.GL397366 2845504 1 - 6458163 --T-- i nomLeu2.GL397366 I 10 I 1 s rheMac3.chr12 12816736 1 - 106825570 --T-- i rheMac3.chr12 I 9 I 2 s papHam1.scaffold15394 40688 1 + 58077 --T-- i papHam1.scaffold15394 I 59 I 1844 s calJac3.chr6 11724014 1 - 158406734 --T-- i calJac3.chr6 I 5 I 2 s equCab2.chr6 66906902 3 - 84719076 CCT-- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=34020.000000 s mm10.chr1_GL456221_random 77635 30 + 206961 --GGACTC----AGTAACTTTTCCTCCACTCCTCTG s speTri2.JH393335 6324671 28 + 10418462 --GGGGTC------CTATTTGATCCAAATCTGTTTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122841 30 - 243199373 ----GATC--CAAATAATATTGCATCCACTCCTCTA i hg19.chr2 I 1 C 0 s panTro4.chr2B 12061568 30 - 247518478 ----GATC--CAAATAATATTGCATCCACTCCTCTA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12223387 30 - 131632457 ----GATC--CAAATAATATTGCATCCACTCCTCTA i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2845506 30 - 6458163 ----GATC--CAAATAATATTTCATCCACTCCTCTA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12816739 30 - 106825570 ----GATC--CAAATAATATTTCATCTACTCCTCTA i rheMac3.chr12 I 2 C 0 s calJac3.chr6 11724017 30 - 158406734 ------TCATCAAATAATGTTTCATCCACTCCTCTA i calJac3.chr6 I 2 C 0 s equCab2.chr6 66906905 31 - 84719076 ATTTGGTC--CAA---ATGTTTCCTCCACTCCTCTA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4913509 2443 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=9121.000000 s mm10.chr1_GL456221_random 77665 4 + 206961 ATAT s speTri2.JH393335 6324699 4 + 10418462 CTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122871 4 - 243199373 ATAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061598 4 - 247518478 ACAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223417 4 - 131632457 ATAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845536 4 - 6458163 ATAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12816769 4 - 106825570 ATAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11724047 4 - 158406734 ATGC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66906936 4 - 84719076 ATAC i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4915952 4 - 30916457 atat i myoLuc2.GL429770 I 2443 I 733 e pteVam1.scaffold_24822 2051 2 - 7207 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=114139.000000 s mm10.chr1_GL456221_random 77669 51 + 206961 TTGCTATTCAAATAACTTTAAC---ATAATCAGAAATCTAATGTCAATAGGAGA s speTri2.JH393335 6324703 54 + 10418462 GCACTATCCTGATAAAGTTGACATAATAATCAGGAAGCTCACAACAATGGGTGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122875 50 - 243199373 CTACCATCCAAA-AAGGTTAAC---ATAATCAGGAAGCTAACAGCAATGGAAGA i hg19.chr2 C 0 I 35 s panTro4.chr2B 12061602 50 - 247518478 CTACCATCCAAA-AAGGTTAAC---ATAATCAGGAAGCTAACAGTAATGGAAGA i panTro4.chr2B C 0 I 35 s gorGor3.chr2B 12223421 50 - 131632457 CTACCATCCAAA-AAGGTTAAC---ATAATCAGGAAGCTAACAGCAATGGAAGA i gorGor3.chr2B C 0 I 35 s nomLeu2.GL397366 2845540 50 - 6458163 CTACCATCCAAA-AAGCTTAGT---ATAATCAGGAAGCTAACAGCAATGGAAGA i nomLeu2.GL397366 C 0 T 794 s rheMac3.chr12 12816773 50 - 106825570 CTACCATCCAAA-AAGGTTAAC---ATAATCAGGAAGCTAACAGCAATGGAAGA i rheMac3.chr12 C 0 I 38 s calJac3.chr6 11724051 50 - 158406734 GTACCGTCCAAA-AAGGTTAAC---GTAATCAGGAAGCTAACAGCAAGGGAAGA i calJac3.chr6 C 0 I 30 s equCab2.chr6 66906940 51 - 84719076 ATACCATCCAAATAAGATTAAC---ATAATCATGAAGCCAATAACAATGGAAGA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=3708.000000 s mm10.chr1_GL456221_random 77720 21 + 206961 TTTCATTATCTACATTTTCAA s speTri2.JH393335 6324757 21 + 10418462 TTCCATCTCCAAGATTTTCAA i speTri2.JH393335 C 0 C 0 s equCab2.chr6 66906991 21 - 84719076 TTCCATCTTCCAGATTTTCAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816823 38 - 106825570 I e tarSyr1.scaffold_28366 12916 2613 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e gorGor3.chr2B 12223471 35 - 131632457 I e panTro4.chr2B 12061652 35 - 247518478 I e hg19.chr2 12122925 35 - 243199373 I e calJac3.chr6 11724101 30 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=1022.000000 s mm10.chr1_GL456221_random 77741 7 + 206961 GTGAAga s tarSyr1.scaffold_28366 15529 7 - 22953 AAGAAAA i tarSyr1.scaffold_28366 I 2613 I 2583 s equCab2.chr6 66907012 7 - 84719076 AAGAAAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324778 0 + 10418462 C e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816823 38 - 106825570 I e nomLeu2.GL397366 2845590 794 - 6458163 T e gorGor3.chr2B 12223471 35 - 131632457 I e panTro4.chr2B 12061652 35 - 247518478 I e hg19.chr2 12122925 35 - 243199373 I e calJac3.chr6 11724101 30 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=75.000000 s mm10.chr1_GL456221_random 77748 7 + 206961 ggaggag s equCab2.chr6 66907019 7 - 84719076 AAATAAG i equCab2.chr6 C 0 I 53 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324778 0 + 10418462 C e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816823 38 - 106825570 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e gorGor3.chr2B 12223471 35 - 131632457 I e panTro4.chr2B 12061652 35 - 247518478 I e hg19.chr2 12122925 35 - 243199373 I e calJac3.chr6 11724101 30 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=0.000000 s mm10.chr1_GL456221_random 77755 1680 + 206961 gtggaggaggaggacaagaagaagaagaaggagaaggagaaggagaagaaggagaaggaggtgaaggagaagaaggagaagaaggagaagaaggaggaggaggaggaggaggtggaggaggaggtgaaggagaagaaggagaagaaggagaagaaggagatgaaggaggaggaggaggagaagaaggaggaggaggaggaggagaaggaggaggagaaggaggagaagaagaaggaggagaaggaggagaagaaggaggagaagaagaaggagaagaagaaggagaagaagaaggagaagaggaaggagaagaagaaggagaagaaggaggagaagaaggaggagaagaaggaggagaagaaggaggagaagaaggaggagaagaagaaggagaagaagaaggagaaaaaggagaagaagaaggagaagaagaaggagaagaaggagaagaagaaggagaagaagaaggagaagaaagagaagaaggaggaggagaaggagaaggagaaggagaagaagaaggagaaggagaagaagaaggagaagaagaaggaggaagagaaggaggaggagaagaaggagaaggagaagaaggagaagaaggagaaggaggaggagatggagaaggaggaggaggaggagaagaaggagaaggagaagaaggagaagaaggagaaggaggaggaggaggaggagaaggaggagaaggaggagaagaaggaggagaagaaggaggagaagaaggaggagaagaagaaggagaagaagaaggagaagaagaaggagaagaaggaggagaaggagaagaaggagaaggagaagaaggagaaggagaagaagaaggataagaaggagaaggagaagaagaaggaggaggaggagaagaaggagaagaaggagaagaaggagaagaaggagaaggaggaggagaaggagaaggaggaggagaaggtaaaggagaagaaggagaagaaggagaaggaggacgaggaggaggagaaggagaaggaggagaagaaggaggagaagaaggaggaggaggaggagaagaagaaggagaagaagaaggagaggaagaaggagaagatgaaggagaagaagatggagaagaagaaggagaagaagaaggggaagaaagagaagaaggaggagaagaaagaggagaagaaggaggagaagaaggagaagaaggagaagaagaaggagaagaagaaggagaaaaagaagaagaaggagaaggagaagaaggagaagaaggaggagaaggagaaggagaagaagaagaagaaggaggaggagaaggaggaggagaagaaggagaaggagaagaaggagaagatggagaaggaggaggagaaggagaaggaggaggaggaggaggaggagaaggaggagaagaaggaggagaagaaggagaagaaggagaagaaggagaagaaggagaaggagaagaaggagaaggtggaggagaaggagaaggaggaggaggaggaggagaagaaggaggagaagaagaaggaggagaaggaggagaaggaggagaagaaggaggaggagaaggaggaggagaagaaggagaagaaggagaaaaaggaggagaagaaggagaagaaggaggagaaggaggagaagaaggagaaggagaaggagaaggagaaggagaaggagaaggagaaggag e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6324778 0 + 10418462 C e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816823 38 - 106825570 I e equCab2.chr6 66907026 53 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e gorGor3.chr2B 12223471 35 - 131632457 I e panTro4.chr2B 12061652 35 - 247518478 I e hg19.chr2 12122925 35 - 243199373 I e calJac3.chr6 11724101 30 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=721.000000 s mm10.chr1_GL456221_random 79435 14 + 206961 aagaagaGATCTTG s speTri2.JH393335 6324778 14 + 10418462 AAGAAAAAATACTG i speTri2.JH393335 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816823 38 - 106825570 I e equCab2.chr6 66907026 53 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e gorGor3.chr2B 12223471 35 - 131632457 I e panTro4.chr2B 12061652 35 - 247518478 I e hg19.chr2 12122925 35 - 243199373 I e calJac3.chr6 11724101 30 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=805.000000 s mm10.chr1_GL456221_random 79449 8 + 206961 TTATTAAA s speTri2.JH393335 6324792 8 + 10418462 TTATTACA i speTri2.JH393335 C 0 C 0 s calJac3.chr6 11724131 8 - 158406734 TTATTTTC i calJac3.chr6 I 30 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816823 38 - 106825570 I e equCab2.chr6 66907026 53 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e gorGor3.chr2B 12223471 35 - 131632457 I e panTro4.chr2B 12061652 35 - 247518478 I e hg19.chr2 12122925 35 - 243199373 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=693.000000 s mm10.chr1_GL456221_random 79457 8 + 206961 CTATT------CTG s speTri2.JH393335 6324800 14 + 10418462 CTAATAAGCATCTG i speTri2.JH393335 C 0 I 24 s rheMac3.chr12 12816861 8 - 106825570 CCACT------CCA i rheMac3.chr12 I 38 C 0 s calJac3.chr6 11724139 8 - 158406734 CCACT------CTG i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907026 53 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e gorGor3.chr2B 12223471 35 - 131632457 I e panTro4.chr2B 12061652 35 - 247518478 I e hg19.chr2 12122925 35 - 243199373 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=1097.000000 s mm10.chr1_GL456221_random 79465 2 + 206961 TC s speTri2.JH393335 6324838 2 + 10418462 TC i speTri2.JH393335 I 24 C 0 s hg19.chr2 12122960 2 - 243199373 TT i hg19.chr2 I 35 C 0 s panTro4.chr2B 12061687 2 - 247518478 TT i panTro4.chr2B I 35 C 0 s gorGor3.chr2B 12223506 2 - 131632457 TT i gorGor3.chr2B I 35 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816869 0 - 106825570 C e equCab2.chr6 66907026 53 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e calJac3.chr6 11724147 0 - 158406734 C e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=198847.000000 s mm10.chr1_GL456221_random 79467 135 + 206961 CCTTCTCTATCCTACCTTTTCCTGG----------------TCACCTGCCTTCCTTACTGGTTAGAATCA-----CTGTTCTCTTTAGCACTCTGGCCCCTACTTGCTCAACCTGAAAGCCTCAATTC--TTTTTCTTCCCTCTTCTCAGTGTCCTCC------- s speTri2.JH393335 6324840 152 + 10418462 CTCACTCTGTCCCACCCTTGCCTGGGCATTGGTGCTT--GGTCACCCATTATTTTTACTAGCTGGAATCAATTA-CTTTCCACCTCCTCACTCTGGTCCCCACTTTCTGGTCCTGGAATCTAGAATTT--TTTAT-TTCCCTCTGGTCAGTGTCCTCC------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12122962 151 - 243199373 CCCACTCTATGCCATCCTTTCCCAGGCCTTGGTTGCT--GTTACCCCGTCATTTTTACTTGTTGGAATAGAGCATTCTCTTTTCTCCTCATTCTGGTCCCTGCTTGCTGTTCCTGAGATCTAAAACTT--TTT---CTTCCTCCATTCAGTGGCCAGT------- i hg19.chr2 C 0 I 7 s panTro4.chr2B 12061689 151 - 247518478 CCCACTCTATGCCATCCTTTCCCAGGCCTTGGTTGCT--GTTACCCCATCATTTTTACTTGTTGGAATAGAGCATTCTCTTTTCTCCTCATTCTGGTCCCTGCTTGCTGTTCCTGAGATCTAAAACTT--TTT---CTTCCTCCATTCAGTGGCCAGT------- i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 12223508 151 - 131632457 CCCACTCTATGCCATCCTTTCCCAGGCCTTGGTTGCT--GTTACCCCGTCATTTTTACTTGTTGGAATAGAGCATTCTCTTTCCTCCTCATTCTGGTCCCTGCTTGCTGTTCCTGAGATCTAAAACTT--TTT---CTTCCTCCATTCAGTGGCCAGT------- i gorGor3.chr2B C 0 I 7 s rheMac3.chr12 12816869 144 - 106825570 ---------TCCCATCCTTCCCCAGGCCTTGGTTGCTCAGTTACCCTGTCATTTTTACTTGTTGGAATAGAGCATTCTCTTTCCTCCTCATTCTGGTCCCTGCTTGCTGTTCCTGAGATCTGAAACTT--TTT---CTTCCTCCGTTCAGTGGCCAGT------- i rheMac3.chr12 C 0 I 7 s calJac3.chr6 11724147 144 - 158406734 ---------TCCCACCCCTGCCCAGGCCGTGGTTGCTCAGTCACTCCATTGTTTTTACTTGTTGGAATAGAGCATTCTCTTCCCCCCTCACTCTGGTCCCTGCTTGTTGTTCCTGAGATCTGCAACTT--TTT---CTTCCTCCTTTCAGTGGCCAGT------- i calJac3.chr6 C 0 I 7 s equCab2.chr6 66907079 161 - 84719076 CCCACTCTCTCCCACCCTTGCC-AGGCCTTGGTGTTCAGTTGGCCCCATCATTTTTACTGGCTGGAATAGATTGTTCTCATTCCTTCTACCTCTGGTCCCTCCTTGCTGGTCCTGGGATCTGACATTTCCTTT---CTTCCTCTGCTCAGCATCCAGTGACAACC i equCab2.chr6 I 53 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I e rn5.chr9 29211370 1183 - 121549591 M a score=8455.000000 s mm10.chr1_GL456221_random 79602 9 + 206961 AGAGATCAC- s rn5.chr9 29212569 9 - 121549591 AGAGATCAC- i rn5.chr9 M 1183 C 0 s speTri2.JH393335 6324992 9 + 10418462 AGTGACAAC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12123120 7 - 243199373 --TGATCCC- i hg19.chr2 I 7 I 1 s panTro4.chr2B 12061847 7 - 247518478 --TGATCCC- i panTro4.chr2B I 7 I 1 s gorGor3.chr2B 12223666 7 - 131632457 --TGATCCC- i gorGor3.chr2B I 7 I 1 s rheMac3.chr12 12817020 7 - 106825570 --TGATCTC- i rheMac3.chr12 I 7 I 1 s calJac3.chr6 11724298 7 - 158406734 --TGATCCC- i calJac3.chr6 I 7 I 1 s equCab2.chr6 66907240 8 - 84719076 --TGAACCCC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 110736 2377 - 176633 I a score=4500.000000 s mm10.chr1_GL456221_random 79611 1 + 206961 C s rn5.chr9 29212578 1 - 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325001 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 12123128 1 - 243199373 C i hg19.chr2 I 1 C 0 s panTro4.chr2B 12061855 1 - 247518478 C i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12223674 1 - 131632457 C i gorGor3.chr2B I 1 C 0 s rheMac3.chr12 12817028 1 - 106825570 C i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11724306 1 - 158406734 C i calJac3.chr6 I 1 C 0 s micMur1.scaffold_3075 113113 1 - 176633 C i micMur1.scaffold_3075 I 2377 I 166 s equCab2.chr6 66907248 1 - 84719076 C i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I a score=122194.000000 s mm10.chr1_GL456221_random 79612 67 + 206961 AG--------AGAAAAGATAAGGAAGACTCTCGAGAGATGCCCCACAGTCCCTCAGGACCCGAGTCAGGTAATCT s rn5.chr9 29212579 67 - 121549591 AG--------AGAAAAGATAAGGAAGACTCTCAAGAGATGCCCCACCATCCCTCAGGACCCGAAGCAGGTGACTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325002 60 + 10418462 AGACCCTCAAACAAAAGATAAGGAAGA---------------CCATACCCCCTCAGGTGCTATTCCAGGTTCTTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12123129 67 - 243199373 --------AAATAAGAGATAAAGAAGACCCTCAAGAGATGCCCCACTCTCCCTTGGGCTCTATGCCAGGTAATCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061856 67 - 247518478 --------AAATAAGAGATAAAGAAGACCCTCAAGAGATGCCCCACTCTCCCTTGGGCTCTATGCCAGGTAATCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223675 67 - 131632457 --------AAATAAGAGATAAAGAAGACCCTCAAGAGATGCCCCACTCTCCCTTGGGCTCTATGCCAGGTAATCT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12817029 67 - 106825570 --------AAATAAAAGATAAAGAAGACCCCCAAGAGACGCCCCACTCTCCGTTGGGCTCTATGCCAGGTAATCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11724307 67 - 158406734 --------AAATAAAAGATAACGAAGGCCTTCAAGAGATGCCCCGCTCCCCCTCAGGCCCTATGCCAGGTAATCT i calJac3.chr6 C 0 T 1809 s equCab2.chr6 66907249 66 - 84719076 --------AAATAAAAGTCAAAGAAGACACTCAAGAAATGCCCTGTGCTCCCTCAGGCCCAGTGCAAGGTAAAC- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113114 166 - 176633 I a score=6460.000000 s mm10.chr1_GL456221_random 79679 7 + 206961 GCCTTTG s rn5.chr9 29212646 7 - 121549591 GCCTTTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325062 7 + 10418462 TCATTTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12123196 7 - 243199373 TGGTTTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12061923 7 - 247518478 TGGTTTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223742 7 - 131632457 TGGTTTG i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12817096 7 - 106825570 TGGTTTA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11722565 7 - 158406734 GCACTTG i calJac3.chr6 T 1809 I 1 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907315 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845590 794 - 6458163 T e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113114 166 - 176633 I a score=4806.000000 s mm10.chr1_GL456221_random 79686 3 + 206961 GCC s rn5.chr9 29212653 3 - 121549591 ACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325069 3 + 10418462 GAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12123203 3 - 243199373 GTC i hg19.chr2 C 0 T 1072 s panTro4.chr2B 12061930 3 - 247518478 GTC i panTro4.chr2B C 0 T 1072 s gorGor3.chr2B 12223749 3 - 131632457 GTC i gorGor3.chr2B C 0 T 1071 s nomLeu2.GL397366 2844796 3 - 6458163 GCC i nomLeu2.GL397366 T 794 C 0 s rheMac3.chr12 12817103 3 - 106825570 GTC i rheMac3.chr12 C 0 T 1072 s calJac3.chr6 11722573 3 - 158406734 GCC i calJac3.chr6 I 1 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907315 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113114 166 - 176633 I a score=3864.000000 s mm10.chr1_GL456221_random 79689 2 + 206961 TT s rn5.chr9 29212656 2 - 121549591 TT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325072 2 + 10418462 CT i speTri2.JH393335 C 0 I 19 s hg19.chr2 12122134 2 - 243199373 TT i hg19.chr2 T 1072 C 0 s panTro4.chr2B 12060861 2 - 247518478 TT i panTro4.chr2B T 1072 C 0 s gorGor3.chr2B 12222681 2 - 131632457 TT i gorGor3.chr2B T 1071 C 0 s nomLeu2.GL397366 2844799 2 - 6458163 TA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12816034 2 - 106825570 TT i rheMac3.chr12 T 1072 C 0 s calJac3.chr6 11722576 2 - 158406734 TT i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907315 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113114 166 - 176633 I a score=77791.000000 s mm10.chr1_GL456221_random 79691 60 + 206961 AGTGACCT-CCTTTTCTGGGCGAGTATACCATCCACTTTCCTCTCTGACAGGCAGTTCAGT s rn5.chr9 29212658 58 - 121549591 AGCGTCCT-CCTTTT--GGGCATGTACACCATCCACTCTCCTCCCTGACAGCCAGTTTGGT i rn5.chr9 C 0 C 0 s hg19.chr2 12122136 61 - 243199373 GATGCTCTATCTGCCCCAGGCACTTTTAACATTCACTCTTCTCCCTGACATCCAGTCCCTG i hg19.chr2 C 0 I 1009 s panTro4.chr2B 12060863 61 - 247518478 GATGCTCTATCTGCCCCAGGCACTTTTAACATTCACTCTTCTCCCTGACATCCGGTCCCTG i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12222683 61 - 131632457 GATGCTCTATCTGCCCCAGGCACTTTTAACATTCACTCTTCTCCCTGACATCCAGTCCCTG i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2844801 61 - 6458163 GATGCTCTATCTGCTTCAGGCACTTTTAACATTCACTCTCCTCCCTGACATCCATTCTCTG i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 12816036 61 - 106825570 GATGCTCTATCTGTTCCAGGCACTTTTAACATTCACCCTCCTCCCTGACATCCAGTCGCTG i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11722578 61 - 158406734 AATGCTCTGTCTCCCCCGGGAACTTCTAATATTCACTCTCCTCCCTCACGTCCAGTCCCTG i calJac3.chr6 C 0 I 11 s equCab2.chr6 66907315 35 - 84719076 -GTGATTT-----------GGATGAGTTAAGTTCGCCTTAGTTTTTG-------------- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113114 166 - 176633 I a score=3311.000000 s mm10.chr1_GL456221_random 79751 5 + 206961 AACCC s rn5.chr9 29212716 5 - 121549591 AACCC i rn5.chr9 C 0 C 0 s hg19.chr2 12123206 5 - 243199373 AACCT i hg19.chr2 I 1009 I 2 s panTro4.chr2B 12060925 5 - 247518478 AATCT i panTro4.chr2B I 1 I 3 s gorGor3.chr2B 12222745 5 - 131632457 AATCT i gorGor3.chr2B I 1 I 3 s nomLeu2.GL397366 2844864 5 - 6458163 AAGCG i nomLeu2.GL397366 I 2 I 881 s rheMac3.chr12 12816098 5 - 106825570 AATCT i rheMac3.chr12 I 1 I 3 s calJac3.chr6 11722650 3 - 158406734 AAT-- i calJac3.chr6 I 11 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907350 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113114 166 - 176633 I a score=-6.000000 s mm10.chr1_GL456221_random 79756 3 + 206961 AAC s rn5.chr9 29212721 3 - 121549591 ACC i rn5.chr9 C 0 C 0 s hg19.chr2 12123213 3 - 243199373 AAG i hg19.chr2 I 2 C 0 s panTro4.chr2B 12060933 3 - 247518478 ATA i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 12222753 3 - 131632457 ATA i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 2845750 3 - 6458163 AAC i nomLeu2.GL397366 I 881 C 0 s rheMac3.chr12 12816106 3 - 106825570 ATA i rheMac3.chr12 I 3 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907350 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e calJac3.chr6 11722653 0 - 158406734 C e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065522 207 - 221441202 T e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113114 166 - 176633 I a score=-612.000000 s mm10.chr1_GL456221_random 79759 3 + 206961 TCT- s rn5.chr9 29212724 3 - 121549591 CTT- i rn5.chr9 C 0 C 0 s hg19.chr2 12123216 3 - 243199373 CTT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060936 3 - 247518478 ATT- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222756 3 - 131632457 ATT- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845753 3 - 6458163 TTT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12816109 3 - 106825570 ATT- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11722653 1 - 158406734 --T- i calJac3.chr6 C 0 C 0 s felCat5.chrC1 9065315 3 - 221441202 -TTA i felCat5.chrC1 T 207 I 1246 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907350 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113114 166 - 176633 I a score=34849.000000 s mm10.chr1_GL456221_random 79762 29 + 206961 TTCCTTCCTCCTTCAGTCGTCAAAGACAA s rn5.chr9 29212727 29 - 121549591 TTCCTTCTTCCTCCAGTTGTCAAAGACAT i rn5.chr9 C 0 C 0 s hg19.chr2 12123219 22 - 243199373 GCCTTTGTTTCTGTGTTTACTA------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12060939 29 - 247518478 TCCTTTCCCCCTTCAGTGACCAATGACAA i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12222759 29 - 131632457 TCCTTTCCTCCTTCAGTGACCGATGACAA i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2845756 29 - 6458163 TTCTTCCTCCATTCAGTGGCCAGTGACAA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12816112 29 - 106825570 TCCTTTCCTCCTTCAGTGACCAATGATGA i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11722654 29 - 158406734 TCCTTTCCTCCTTCAGTGACCAGTGACAA i calJac3.chr6 C 0 I 1 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907350 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113114 166 - 176633 I a score=300.000000 s mm10.chr1_GL456221_random 79791 1 + 206961 C s rn5.chr9 29212756 1 - 121549591 C i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 113280 1 - 176633 C i micMur1.scaffold_3075 I 166 I 639 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816141 1 - 106825570 I e equCab2.chr6 66907350 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845785 1 - 6458163 I e gorGor3.chr2B 12222788 1 - 131632457 I e panTro4.chr2B 12060968 1 - 247518478 I e hg19.chr2 12123241 0 - 243199373 C e calJac3.chr6 11722683 1 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I a score=5312.000000 s mm10.chr1_GL456221_random 79792 4 + 206961 TTAA s rn5.chr9 29212757 4 - 121549591 TTAA i rn5.chr9 C 0 C 0 s panTro4.chr2B 12060969 4 - 247518478 TTAA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12222789 4 - 131632457 TTAA i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2845786 4 - 6458163 CTGA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12816142 4 - 106825570 TTGA i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11722684 4 - 158406734 TTAA i calJac3.chr6 I 1 C 0 s equCab2.chr6 66907350 3 - 84719076 -TGT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_24822 2051 2 - 7207 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12123241 0 - 243199373 C e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=7766.000000 s mm10.chr1_GL456221_random 79796 6 + 206961 CATCCA s rn5.chr9 29212761 6 - 121549591 CATCCA i rn5.chr9 C 0 C 0 s panTro4.chr2B 12060973 6 - 247518478 CATCCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12222793 6 - 131632457 CATCCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845790 6 - 6458163 TCCCCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12816146 6 - 106825570 CATCCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11722688 6 - 158406734 CACCCA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66907353 6 - 84719076 CTTCCA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_15734 2960 5 - 27100 CTCCC- i pteVam1.scaffold_15734 n 2 I 733 e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12123241 0 - 243199373 C e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=39113.000000 s mm10.chr1_GL456221_random 79802 87 + 206961 AGACTAACAAGCAAGATGACTCAGGA-----GCATGGCCTCTGGGTTCCCCTGG--------CACCATGCATGGTGATGCTAGTTAAGGCTGACTTAGCT s rn5.chr9 29212767 87 - 121549591 AGACTAACAATCGAGATGACTCAGGA-----GCACAGCCTCCGGGTTCTCCTGG--------CACCATGCATGGTAATGCTGGTTAAGGCTGACCTAACT i rn5.chr9 C 0 C 0 s hg19.chr2 12123241 44 - 243199373 ----------AGAGGAAAAGCCA--------TTCGGATCTTC-----TAGAGAG-------------------------------GGGGCT--CTCCTCC i hg19.chr2 C 0 I 5 s panTro4.chr2B 12060979 87 - 247518478 AAATGAATGCAGAAGAAGACTCAGAAGAGATGCCCAGCCTCC-----TCACTAG--------CACTGTGCAAGGTAACACCGACTGGGGCTGATACCGCT i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 12222799 87 - 131632457 AAATGAATGCGGAAGAAGACTCAGAAGAGATGCCCAGCCTCC-----TCACTAG--------CACTGTGCAAGGTAACACTGACTGGGGCTGATACCGCT i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 2845796 73 - 6458163 AACTAAA---AGATAAAGACCCTCAAGAGATGCCCCACTCTC-----CCTTGGG--------CTCTATGCCAGCTAATCTTGGTTTGGT----------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12816152 87 - 106825570 AAATGAATGAGGAAGAAGACTCAGAAGAGATGCCCAGCCTCC-----TCGCTAG--------CACTGTGCCAGGTAATACCGACTGGGGCTGATACAGCT i rheMac3.chr12 C 0 I 867 s calJac3.chr6 11722694 87 - 158406734 AAATGAATGAGGAAGAAGACTCAAAAGAGATGCCCAGCCTCC-----TCGCTAG--------CACTGTGCAAGGTAACACTGACTGGGGCTGATACAGCT i calJac3.chr6 C 0 I 5 s equCab2.chr6 66907359 68 - 84719076 ----------------------AGAGCAGAAGCCATGCTGAC-----CTTCTAGGAACAGTGCTCTCTGCTCTCTATTGCCATCTTTG-----CCCAGCT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=1314.000000 s mm10.chr1_GL456221_random 79889 1 + 206961 C s rn5.chr9 29212854 1 - 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 12123290 1 - 243199373 C i hg19.chr2 I 5 C 0 s panTro4.chr2B 12061071 1 - 247518478 C i panTro4.chr2B I 5 I 861 s gorGor3.chr2B 12222891 1 - 131632457 C i gorGor3.chr2B I 5 I 860 s calJac3.chr6 11722786 1 - 158406734 C i calJac3.chr6 I 5 I 1775 s equCab2.chr6 66907427 1 - 84719076 T i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816239 867 - 106825570 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2845869 0 - 6458163 C e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=1660.000000 s mm10.chr1_GL456221_random 79890 5 + 206961 TTAGC s rn5.chr9 29212855 5 - 121549591 TTAGC i rn5.chr9 C 0 C 0 s hg19.chr2 12123291 5 - 243199373 TCAGC i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 2845869 1 - 6458163 ----C i nomLeu2.GL397366 C 0 C 0 s equCab2.chr6 66907428 5 - 84719076 CTGGC i equCab2.chr6 C 0 I 4 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12816239 867 - 106825570 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e gorGor3.chr2B 12222892 860 - 131632457 I e panTro4.chr2B 12061072 861 - 247518478 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=-2620.000000 s mm10.chr1_GL456221_random 79895 7 + 206961 AACCT--TG-- s rn5.chr9 29212860 7 - 121549591 AGTCT--TC-- i rn5.chr9 C 0 C 0 s hg19.chr2 12123296 7 - 243199373 AATCTTG---- i hg19.chr2 C 0 I 63 s panTro4.chr2B 12061933 5 - 247518478 AACCT------ i panTro4.chr2B I 861 C 0 s gorGor3.chr2B 12223752 5 - 131632457 AACCT------ i gorGor3.chr2B I 860 C 0 s nomLeu2.GL397366 2845870 5 - 6458163 AACCT------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817106 5 - 106825570 AACCT------ i rheMac3.chr12 I 867 C 0 s equCab2.chr6 66907437 7 - 84719076 CACCT----AG i equCab2.chr6 I 4 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=11156.000000 s mm10.chr1_GL456221_random 79902 41 + 206961 CTTGGGATAGCTTAAGCTCATCTCCACTTTCCTAACAAACA s rn5.chr9 29212867 41 - 121549591 ATTGGGACAGCTTATGCTCACCTCCACTTTCCTACCAAAAA i rn5.chr9 C 0 C 0 s panTro4.chr2B 12061938 34 - 247518478 -----AAAAGCTTGCCTTTGTTTCTG--TGTTTACTAAGAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223757 34 - 131632457 -----AAAAGCTTGCCTTTGTTTCTG--TGTTTACTAAGAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845875 34 - 6458163 -----AAAAGCTTACCTTTGTTTCTG--TGTCTACTGAGAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817111 34 - 106825570 -----GAAAGCTTGCCTTTGTTTCTG--TGTCTACCTAGAG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66907444 22 - 84719076 TCCACGAGAGCTTAGACAAGCA------------------- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325074 19 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12123303 63 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=8079.000000 s mm10.chr1_GL456221_random 79943 4 + 206961 GAAA s rn5.chr9 29212908 4 - 121549591 GAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325093 3 + 10418462 -GAA i speTri2.JH393335 I 19 C 0 s panTro4.chr2B 12061972 4 - 247518478 GAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223791 4 - 131632457 GAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845909 4 - 6458163 GAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817145 4 - 106825570 GAAA i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66907466 4 - 84719076 GGAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4915956 733 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12123303 63 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=1253.000000 s mm10.chr1_GL456221_random 79947 6 + 206961 AG-AATT s rn5.chr9 29212912 7 - 121549591 AGCCATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325096 7 + 10418462 AGCCATT i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 12061976 7 - 247518478 AGCCATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223795 7 - 131632457 AGCCATT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845913 7 - 6458163 AGCCATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817149 7 - 106825570 GGCCATT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66907470 1 - 84719076 ----A-- i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4916689 1 - 30916457 ----a-- i myoLuc2.GL429770 I 733 I 7190 e pteVam1.scaffold_15734 2965 733 - 27100 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12123303 63 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=25763.000000 s mm10.chr1_GL456221_random 79953 28 + 206961 TGAGTCCTCTTGCTATGAGGCTCTC---------GCT s rn5.chr9 29212919 29 - 121549591 GGAGTCCTCTTGGTATGAGGCTGTCT--------ATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325103 37 + 10418462 TGCATCTTCTTGGAATGGGGCTGTCCTTCTCTGAGCC i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 12061983 33 - 247518478 CGGATCTTCTAGAGAGGCGGCTCTCCTCCT----GCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223802 33 - 131632457 CGGCTCTTCTAGAGAGGGGGCTCTCCTCCT----GCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845920 33 - 6458163 TGGATCTTCTAGGGAGGGGGCTCTCCTCCT----GCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817156 33 - 106825570 CAGATCTTCTAGGGAGGGGGCTCTCCTCCC----GCC i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907471 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12123303 63 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9065318 1246 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=-3160.000000 s mm10.chr1_GL456221_random 79981 1 + 206961 -C s rn5.chr9 29212948 1 - 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325140 1 + 10418462 -G i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 12062016 1 - 247518478 -T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12223835 1 - 131632457 -T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2845953 1 - 6458163 -T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817189 1 - 106825570 -T i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 9066564 1 - 221441202 A- i felCat5.chrC1 I 1246 I 3372 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907471 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12123303 63 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=19053.000000 s mm10.chr1_GL456221_random 79982 38 + 206961 CC--------ATCTCAGCCTAGCTTCCTGCCCCTCACCCAA-GCTTG s rn5.chr9 29212949 38 - 121549591 CT--------ATCTCAGCTGAGCTTCCCGCTCCTCACCCAA-GCTTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325141 38 + 10418462 CC--------ATCTTGGCCCCA-TTCCAGCTGCTCACCCAGTGCTTA i speTri2.JH393335 C 0 I 29 s panTro4.chr2B 12062017 41 - 247518478 CT---CAGCAATCTTGGCCCAGCTTCCAG---TTCACCCAGCACTTG i panTro4.chr2B C 0 I 35 s gorGor3.chr2B 12223836 41 - 131632457 CT---CAGCAATCTTGGCCCAGCTTCCAG---TTCACCCAGCACTTG i gorGor3.chr2B C 0 I 35 s nomLeu2.GL397366 2845954 44 - 6458163 CTCAACAGCAATCTTGGCCCAGCTTCCAG---TTCACCCAGCACTTG i nomLeu2.GL397366 C 0 I 17 s rheMac3.chr12 12817190 38 - 106825570 CT------CAATCTTGGCCCAGCTTCCAG---TTCACTCAGCACTGG i rheMac3.chr12 C 0 I 35 s equCab2.chr6 66907471 15 - 84719076 ----CCTGAATTCTTGAGT---------------------------- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12123303 63 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=257998.000000 s mm10.chr1_GL456221_random 80020 196 + 206961 GGAGGT-----------------AGAGTTAT--GGAGAGGGC-AAGGAAGCAGGACTGGAA-AGATAGACTT--ATGGATCCACCAATCATAAAGTCA-CAAAGTCCCCTCACACCTGCTAGACTTAGACTCTAAATCATTA---CAGTGTCAACAAACAGAGGTGACTCC----TCAGCCACAAGAGACTGTAGTGAG--CTTCAAGAGAGA----AGAGGAC-AAG-GCAGGC- s rn5.chr9 29212987 192 - 121549591 GGATGT-----------------AGAGTTGT--GGGGAAGGC-AAAGAGGCAGGACGGGAA-AGGCAGACTT--CTGGATCCACCAA--------TCA-GAAAGTCCCCTCACACCTGCTAGACTTAGACTCTAAATGATTGA-TTGGTGTCAACAAGCAGA--CGATTCCAAATAGAGCCACAAGAGACCGTAGTGGG--CTCCAGGAGAGC----AGAGGAC-AAG-GTAGGG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325208 192 + 10418462 GGAGGC-----------------AGAGTCACA-GGGGAGGGC-CTGGAGGCAGGTCTGGAAGAGGTAGG------------CACCAGTCATGGAGGTC-AGAAGCCCCAGTATACCTGCTAAACTTGGACTCCAAGT-ACTAC-ATGGCATCTGCAAAGGGAGAGCATTCC----TCTGCCACAAGGGATTGTAGTGGGAACCGCAGGGGAGA----AGGCCAC-AAGAACAGGC- i speTri2.JH393335 I 29 I 14 s hg19.chr2 12123366 205 - 243199373 GGATAC-----------------AGAGTCCCTGGGGGAGGGCAAAGGAGGCAAGTCTGGAAAAGGTAGACTTGGATAGGGCCACGGATGATGATGGAC-AGAGCCCCACCAGTGCCTG-TAGGTTTGGACTCCAAAT-GCCAC-AAAGCGCCTGAAAGGGAA--ACATTCA----CCTGCCACAAAGGGTTGTGGCAGGAACCCCAGGGGAAAGCA-AGGGAACTGAG-TCAGG-- i hg19.chr2 I 63 C 0 s panTro4.chr2B 12062093 205 - 247518478 GGATAC-----------------AGAGTCCCTGGGGGAGGGCAAAGGAGGCAAGTCTGGAAAAGGTAGACTTGGATAGGGCCACGGATGATGATGGAC-AGAGCCCCACCAGTGCCTG-TAGG-TTGGACTCCAAAT-GTCAC-AAAGCGCTTGAAAGGGAA--ACATTCA----CCTGCCACAAAGGGTTGTGGCAGGAACCCCAGGGGAAAGCACAGGGAACTGAG-TCAGG-- i panTro4.chr2B I 35 C 0 s gorGor3.chr2B 12223912 206 - 131632457 GGATAC-----------------AGAGTCCCTGGGGGAGGGCAAAGGAGGCAAGTCTGGAAAAGGTAGATTTGGATAGGGCCACGGATGATGATGGAC-AGAGCCCCACCAGTGCCTG-TAGGTTTGGACTCCAAAT-GCCAC-AAAGCACCTGAAAGGGAA--ACATTCA----CCTGCCACAAAGGGTTGTGGCAGGAACCCCAGGGGAAAGCACAGGGAACTGAG-TCAGG-- i gorGor3.chr2B I 35 C 0 s nomLeu2.GL397366 2846015 222 - 6458163 GGAGACCTGACCTCTGAATGGATAGAGTCCCC-GGGGAGGGCAAAAGAGGCAAGTCTGGAAAAGGTAGACTTGGATAGGGCCACGGATGATGATGGAC-AGAGCCCCACCAGTATCTG-TAGGTTTGGACTCCAAAT-GCCAC-AAAGCACCTGAAAGGGAA--ACATTCA----CCTGCCACAAAGGGTTGTGGCAGGAACCCCAGGGAAAAGCACAGGGAACTGAG-TCAGG-- i nomLeu2.GL397366 I 17 C 0 s rheMac3.chr12 12817263 206 - 106825570 GGATAC-----------------AGAGTCCCTGGGGGAGGGCAAAGGAGGCAAGTCTGGAAAAGGTAGACTTGGATAGGGCCACAGATGATGATGGAC-AGAGCCCCACCAGTACCTG-TAGGCTTGGACTCCAAAT-ACCAC-AAAGTGCCTGAAAGGGAA--ACATTCA----CCTGCCACAAGGGGTTGTGGCAGGAACCCCAGGGGAAAGCACAGGGAACTGAG-TCAGG-- i rheMac3.chr12 I 35 C 0 s equCab2.chr6 66907486 197 - 84719076 GGAGAC-----------------AGAGTCACA-AGGAAGGGTAAGGGAGATGAGTCCGGGAAAAGTAGACTGAGAGGGAAGCACCGATGATAAGGGATGGGAGCCCCACTAGTATCCACTGGATTTGGACTCCAAAC-ACAACTACAGGGTCTGCGAAGGGAGAACATTCA----TCTGCCA------------GGAGGATGTCGAGGAAAGGACG-AGGGATC-GAG-TCAGG-G i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=63492.000000 s mm10.chr1_GL456221_random 80216 41 + 206961 CTGGACTGTGTGACCTTGCAGCTGTGATGAAGTCACAGCAA s rn5.chr9 29213179 41 - 121549591 CTGGACTGTGTGACCTTGCAGCTGTGATGAGCTCACAGCAA i rn5.chr9 C 0 C 0 s hg19.chr2 12123571 41 - 243199373 CTGGACTGTTTGACAGAGCCACTCTTCTGAGGCCACTTCAA i hg19.chr2 C 0 I 1 s panTro4.chr2B 12062298 41 - 247518478 CTGGACTGTTTGACAGAGCCACTCTTCTGAGGCCACTTCAA i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12224118 41 - 131632457 CTGGACTGTTTGACAGAGCCACTCTTCTGAGGCCACTTCAA i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2846237 41 - 6458163 CTGGACTGTTTGACAGAGCCACTCTTCTGAGGCCACGTCAA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12817469 40 - 106825570 CTGGACTGTTTGCCGGAGCCACTCTTCTGA-GCCTCTTCAA i rheMac3.chr12 C 0 I 1 s equCab2.chr6 66907683 40 - 84719076 CAGGACTGTTTGACTCAGCCATTCT-CTGAGGCCACTTCAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325400 14 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=254909.000000 s mm10.chr1_GL456221_random 80257 157 + 206961 -TAGGTGATGCTCAA----ACAGCCCCAATAAAATGCAAGACAGGCAAACAGAAGCCCCGTCTGTCCCCAGTGGTGGG-TAATGTAGCTGATGTGGCTGGTTCTCCTTCCTTGACTTCA----CCCTGACTATGGGAA---TTGTCCTTCAGTGCTAGTCAGTTATACAT s rn5.chr9 29213220 152 - 121549591 -TGGCTGACGCTCAAACTGACAGCCTCAACAAAATGCATGACAGG--------AATCCCGTTTGTCCCCAGCGGTGGG-TGATGTCGCTGATGTGGCTGGCTCTCCTTCCTTGACTTCA-----GCTGAGTGAGGGAA---CTGTCTTTCAGTACTAGTCAATTCTACAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325414 158 + 10418462 -TAGGGAATGCTCAAA---ACTGCCCTGCTGAGATGCAGAGCAAGCAGAA---AAACACGGGTAGCCTGAATGGTGAG-TGGAAGGGC-AATGCAGATGGA---CCCGCCTTGCCCTCACTCACGCTGACTGTGGGGAACTCCCACCCTCAACCCTAGTCATTTTTGTAT i speTri2.JH393335 I 14 C 0 s hg19.chr2 12123613 161 - 243199373 -AAAGTAGTGCTCAAA---ACGGCTCTGTCAAAATGCAAAGCAAATGAACAAAAACACTGTGTGGCCCTAATAGTGAATTGCTGCAGCAGACATGGATGGTCCTCCTTCCAAGCCCCCA-----CCTGACTGTGGGGAATTTTCACTTTCAACCCTGGTCATTTCTATAT i hg19.chr2 I 1 I 7 s panTro4.chr2B 12062340 161 - 247518478 -AAAGTAGTGCTCAAA---ACGGCTCTGTCAAAATGCAAAGCAAATGAACAAAAACACTGTGTGGCCCTAATAGTGAATTGGTGCAGCAGACATGGATGGTCCTCCTTCCAAGCCCCCA-----CCTGACTGTGGGGAATTTTCACTTTCAACCCTGGTCATTTCTATAT i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12224160 161 - 131632457 -AAAGTAGTGCTCAAA---ACTGCTCTGTCAAAATGCGAAGCAAATGAACAAAAACACTGTGTGGCCCTAATAGTGAATTGGTGCAGCAGACATGGATGGTCCTCCTTCCAAGCCCCCA-----CCTGACTGTGGGGAATTTTCACTTTCAACCCTGGTCATTTCTATAT i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2846279 161 - 6458163 -AAAGTAGTGCTCAAA---ACTGCTTTGTCAAAATGCAAAGCAAATGAACAAAAACACTGTGCGGCCCTAATAGTGAATTGGTGCAGCAGACATGGATGGTCCTCCTTCCAAGCCCCAA-----CCTGACAGTGGGGAATTTTCACTTTCAACCCTGGTCATTTCTATAT i nomLeu2.GL397366 I 1 I 12 s rheMac3.chr12 12817510 157 - 106825570 -AAAGCAGTGCTCAAA---ACTGCTCTGTC--AATGCAAAGAAAATGAATAAAAACACTGTGTGGCCCTAATAGTGA--TGGTGCAGCAGACACGGATGGTCCTCCTTCCAAGCCCCAA-----CCTAATGGTGGGGAATCTTCACTTTCAACCCTGGTCATTTCTATGT i rheMac3.chr12 I 1 C 0 s equCab2.chr6 66907723 153 - 84719076 TAAGATAAAGCTCAAA---ACTGCTCCATCAAAATGCAAAGCAAA----CAAAAACATGGTGTGGCCCTCGCACTGAATTGTTGCCCCCGACATGGATGGTCCTCCTTCCCAGCCCCCA----CCCTGACTGTGGGGA------AATTTCATCTCTCGTCATTTCTAAGT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=-533.000000 s mm10.chr1_GL456221_random 80414 7 + 206961 TGTACAG s rn5.chr9 29213372 7 - 121549591 AGTACAG i rn5.chr9 C 0 C 0 s rheMac3.chr12 12817667 3 - 106825570 CGT---- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66907876 7 - 84719076 TGTTTGG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325572 0 + 10418462 C e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846440 12 - 6458163 I e gorGor3.chr2B 12224321 0 - 131632457 C e panTro4.chr2B 12062501 0 - 247518478 C e hg19.chr2 12123774 7 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=273.000000 s mm10.chr1_GL456221_random 80421 1 + 206961 A s rn5.chr9 29213379 1 - 121549591 A i rn5.chr9 C 0 C 0 s equCab2.chr6 66907883 1 - 84719076 A i equCab2.chr6 C 0 I 276 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325572 0 + 10418462 C e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817670 0 - 106825570 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846440 12 - 6458163 I e gorGor3.chr2B 12224321 0 - 131632457 C e panTro4.chr2B 12062501 0 - 247518478 C e hg19.chr2 12123774 7 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=981.000000 s mm10.chr1_GL456221_random 80422 19 + 206961 AAACTAA-AATATATGATAT s rn5.chr9 29213380 20 - 121549591 GTACTAAGAATATATGATAT i rn5.chr9 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325572 0 + 10418462 C e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817670 0 - 106825570 C e equCab2.chr6 66907884 276 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846440 12 - 6458163 I e gorGor3.chr2B 12224321 0 - 131632457 C e panTro4.chr2B 12062501 0 - 247518478 C e hg19.chr2 12123774 7 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=-2174.000000 s mm10.chr1_GL456221_random 80441 55 + 206961 TAAAGTGATATGAAagccaggcgtggtggcacgcacctttaatcccagcacttgg s speTri2.JH393335 6325572 7 + 10418462 ------------------------------------------------CATTTGG i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 12062501 7 - 247518478 ------------------------------------------------CATTTGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224321 7 - 131632457 ------------------------------------------------CATTTGG i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12817670 4 - 106825570 ---------------------------------------------------TTGG i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907884 276 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846440 12 - 6458163 I e hg19.chr2 12123774 7 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I e rn5.chr9 29213400 0 - 121549591 C a score=105.000000 s mm10.chr1_GL456221_random 80496 25 + 206961 gaggcagaagcaggcagatttctga s speTri2.JH393335 6325579 8 + 10418462 -----------------ATTTTTGA i speTri2.JH393335 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817674 0 - 106825570 C e equCab2.chr6 66907884 276 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846440 12 - 6458163 I e gorGor3.chr2B 12224328 0 - 131632457 C e panTro4.chr2B 12062508 0 - 247518478 C e hg19.chr2 12123774 7 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I e rn5.chr9 29213400 0 - 121549591 C a score=0.000000 s mm10.chr1_GL456221_random 80521 82 + 206961 gttcgaggctagcctggtctacaaaatgagttccaggacagccagagctacacagagaaaccctgtcttgaaaaaccaaaaA e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325587 0 + 10418462 C e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817674 0 - 106825570 C e equCab2.chr6 66907884 276 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846440 12 - 6458163 I e gorGor3.chr2B 12224328 0 - 131632457 C e panTro4.chr2B 12062508 0 - 247518478 C e hg19.chr2 12123774 7 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I e rn5.chr9 29213400 0 - 121549591 C a score=4378.000000 s mm10.chr1_GL456221_random 80603 24 + 206961 AATTTaaaaatt-----aaaaaaaaaaca s hg19.chr2 12123781 12 - 243199373 AGTTTAAGAGTT----------------- i hg19.chr2 I 7 C 0 s panTro4.chr2B 12062508 12 - 247518478 AGTTTAAGAGTT----------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224328 12 - 131632457 AGTTTAAGAGTT----------------- i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 12817674 17 - 106825570 AGTTTAAGAGTTGATAT------------ i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325587 0 + 10418462 C e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66907884 276 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846440 12 - 6458163 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I e rn5.chr9 29213400 0 - 121549591 C a score=273.000000 s mm10.chr1_GL456221_random 80627 3 + 206961 aaa s nomLeu2.GL397366 2846452 3 - 6458163 AAA i nomLeu2.GL397366 I 12 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325587 0 + 10418462 C e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817691 0 - 106825570 C e equCab2.chr6 66907884 276 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e gorGor3.chr2B 12224340 0 - 131632457 C e panTro4.chr2B 12062520 0 - 247518478 C e hg19.chr2 12123793 0 - 243199373 C e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I e rn5.chr9 29213400 0 - 121549591 C a score=340.000000 s mm10.chr1_GL456221_random 80630 3 + 206961 aaa s speTri2.JH393335 6325587 3 + 10418462 AAG i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2846455 3 - 6458163 GAG i nomLeu2.GL397366 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817691 0 - 106825570 C e equCab2.chr6 66907884 276 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e gorGor3.chr2B 12224340 0 - 131632457 C e panTro4.chr2B 12062520 0 - 247518478 C e hg19.chr2 12123793 0 - 243199373 C e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I e rn5.chr9 29213400 0 - 121549591 C a score=8000.000000 s mm10.chr1_GL456221_random 80633 10 + 206961 taaaaaataa s speTri2.JH393335 6325590 10 + 10418462 CAGATATTAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12123793 8 - 243199373 --GATATTAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062520 8 - 247518478 --GATATTAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224340 8 - 131632457 --GATATTAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846458 10 - 6458163 TTGATATTAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817691 3 - 106825570 -------TAC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66908160 10 - 84719076 TAGATATTAT i equCab2.chr6 I 276 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I e rn5.chr9 29213400 0 - 121549591 C a score=169356.000000 s mm10.chr1_GL456221_random 80643 99 + 206961 taaaatgatatgaaaagaaaggaaTGACTTCAAAAGTCTGTAGACAGTTTACAATATACCTCAGTTACCTAACCCTAAAGAAGCCAGAATTTAAGACAA----------- s rn5.chr9 29213400 98 - 121549591 TAAAATGATAGGAAAAGAAAGAAATGACCACAAAAG-CCGTAGACAGTTTACAATGTGACCCAGTTACCTGACCCTAAAGAAGTCAGAATTTAAGACAA----------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325600 94 + 10418462 TAAAGCAATGTGAAAAGTAGTAAATTGTCTCAAAAG---TTCAACAGTTGCTTATCCA-CACAGTCACCGGCTGCT-ATGTAGGCAGAATTGGAGACAG----------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12123801 99 - 243199373 GAATATAACTTGAAAGGTAATAAATTATTCCAAAGATCTAATGACTGCTTGCCACCTGCCTCAGTCACCTATTCCTAAGCAGGCCAGCATTTGAGACCA----------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062528 99 - 247518478 GAATATAATTTGAAAGGTAATAAATTATTCCAAAGGTCTAATGACTGCTTGCCACCTGCCTCAGTCACCTATTCCTAAGCAGGCCAGCATTTGAGACCA----------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224348 99 - 131632457 GAATATAATTTGAAAGGTAATAAATTATTCCAAAGGTCTAATGACTGCTTGCCACCTGCCTCAGTCACCTATTCCTAAGCAGGCCAGCATTTGAGACCA----------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846468 99 - 6458163 TAATACAATTTGAAAGGTAATAAATTATTCCAAAGGTCTAATGACTGCTTGCCACCTGCCTCAGTCACCTATTCCTAAGCAGGCCAGCATTTGAGACCA----------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817694 99 - 106825570 TAATATAATTTGAAAGGTAATAAATTATTCCAAAGGTCTAATGACCGTTTGCTACCTGCCTCAGTCACCTATTCCTACGCAGGCCAGCATTTGAGACCA----------- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66908170 110 - 84719076 TTAAATAATTTGAAATGCGACAAATGATTTAAAAGGTGTAATGACTGCTTGCTACCTGTCTCAGGGACCTGTTCCTAAGCAGGCCAGAATTTGAAACAGATCTCACAGCA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 2965 733 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=4829.000000 s mm10.chr1_GL456221_random 80742 3 + 206961 CTT s rn5.chr9 29213498 3 - 121549591 TTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325694 3 + 10418462 ATC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12123900 3 - 243199373 ATC i hg19.chr2 C 0 I 11 s panTro4.chr2B 12062627 3 - 247518478 ATC i panTro4.chr2B C 0 I 11 s gorGor3.chr2B 12224447 3 - 131632457 ATC i gorGor3.chr2B C 0 I 11 s nomLeu2.GL397366 2846567 3 - 6458163 ATC i nomLeu2.GL397366 C 0 I 11 s rheMac3.chr12 12817793 3 - 106825570 ATC i rheMac3.chr12 C 0 I 11 s equCab2.chr6 66908280 2 - 84719076 -TT i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_15734 3698 2 - 27100 -TT i pteVam1.scaffold_15734 I 733 C 0 e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=273.000000 s mm10.chr1_GL456221_random 80745 1 + 206961 T s rn5.chr9 29213501 1 - 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325697 1 + 10418462 T i speTri2.JH393335 C 0 C 0 e pteVam1.scaffold_15734 3700 0 - 27100 C e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817796 11 - 106825570 I e equCab2.chr6 66908282 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846570 11 - 6458163 I e gorGor3.chr2B 12224450 11 - 131632457 I e panTro4.chr2B 12062630 11 - 247518478 I e hg19.chr2 12123903 11 - 243199373 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_22666 17591 144 - 17749 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113281 639 - 176633 I a score=-23183.000000 s mm10.chr1_GL456221_random 80746 2 + 206961 T--------------C s rn5.chr9 29213502 16 - 121549591 CATAATATTGCATAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325698 16 + 10418462 CCTAGGATTGTGTAGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12123914 3 - 243199373 -------------TGT i hg19.chr2 I 11 C 0 s panTro4.chr2B 12062641 3 - 247518478 -------------TAT i panTro4.chr2B I 11 C 0 s gorGor3.chr2B 12224461 3 - 131632457 -------------TGT i gorGor3.chr2B I 11 C 0 s nomLeu2.GL397366 2846581 3 - 6458163 -------------TGT i nomLeu2.GL397366 I 11 C 0 s rheMac3.chr12 12817807 3 - 106825570 -------------TGT i rheMac3.chr12 I 11 C 0 s micMur1.scaffold_3075 113920 3 - 176633 -------------TGC i micMur1.scaffold_3075 I 639 C 0 s equCab2.chr6 66908282 2 - 84719076 --------------GT i equCab2.chr6 C 0 I 2 s pteVam1.scaffold_15734 3700 2 - 27100 --------------GT i pteVam1.scaffold_15734 C 0 I 11116 s choHof1.scaffold_211216 2953 2 - 3719 ------------TT-- i choHof1.scaffold_211216 n 144 C 0 e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I a score=10742.000000 s mm10.chr1_GL456221_random 80748 5 + 206961 AAAC-A s rn5.chr9 29213518 5 - 121549591 CAAC-A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325714 5 + 10418462 AAAG-A i speTri2.JH393335 C 0 I 7 s hg19.chr2 12123917 5 - 243199373 AAAG-A i hg19.chr2 C 0 I 7 s panTro4.chr2B 12062644 5 - 247518478 AAAG-A i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 12224464 5 - 131632457 AAAG-A i gorGor3.chr2B C 0 I 7 s nomLeu2.GL397366 2846584 6 - 6458163 AAAGAA i nomLeu2.GL397366 C 0 I 7 s rheMac3.chr12 12817810 5 - 106825570 AAAG-A i rheMac3.chr12 C 0 I 7 s micMur1.scaffold_3075 113923 5 - 176633 AGAT-A i micMur1.scaffold_3075 C 0 I 7 s equCab2.chr6 66908286 5 - 84719076 AAAC-A i equCab2.chr6 I 2 I 7 s choHof1.scaffold_211216 2955 5 - 3719 AAAC-A i choHof1.scaffold_211216 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e calJac3.chr6 11722787 1775 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I a score=3971.000000 s mm10.chr1_GL456221_random 80753 1 + 206961 G s rn5.chr9 29213523 1 - 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325726 1 + 10418462 G i speTri2.JH393335 I 7 C 0 s hg19.chr2 12123929 1 - 243199373 G i hg19.chr2 I 7 C 0 s panTro4.chr2B 12062656 1 - 247518478 G i panTro4.chr2B I 7 C 0 s gorGor3.chr2B 12224476 1 - 131632457 G i gorGor3.chr2B I 7 C 0 s nomLeu2.GL397366 2846597 1 - 6458163 G i nomLeu2.GL397366 I 7 C 0 s rheMac3.chr12 12817822 1 - 106825570 G i rheMac3.chr12 I 7 C 0 s calJac3.chr6 11724562 1 - 158406734 G i calJac3.chr6 I 1775 C 0 s micMur1.scaffold_3075 113935 1 - 176633 A i micMur1.scaffold_3075 I 7 I 5781 s equCab2.chr6 66908298 1 - 84719076 G i equCab2.chr6 I 7 C 0 s choHof1.scaffold_211216 2960 1 - 3719 A i choHof1.scaffold_211216 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I a score=2818.000000 s mm10.chr1_GL456221_random 80754 1 + 206961 A s rn5.chr9 29213524 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325727 1 + 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 12123930 1 - 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062657 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12224477 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2846598 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817823 1 - 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11724563 1 - 158406734 A i calJac3.chr6 C 0 C 0 s equCab2.chr6 66908299 1 - 84719076 A i equCab2.chr6 C 0 C 0 s choHof1.scaffold_211216 2961 1 - 3719 G i choHof1.scaffold_211216 C 0 I 187 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=245200.000000 s mm10.chr1_GL456221_random 80755 108 + 206961 CAGTTTTAAG-GAGATGGACCTTTGTATCTGTTATGGTATCAAGCCC---CTGTTTTTCTTATTGCATCAAA-GCAAGACAAAT----TTTGTGATGTATCTGCTGTTAGCAGGTGC s rn5.chr9 29213525 111 - 121549591 CAGCCTTAAG-GAGATGGACCTTTTTACCTATTGTGGTATCAAGCCCCCTCTGTTTTTCTTATTGCATCAAA-GCAAGCCAAAT----TTCATAATGAATTTGCTGTTAGCAGATGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325728 91 + 10418462 CGTCCCTACGTGGGATGGACCTT--TATTTATTCTATT-TCAAGTCC-----------------TCAGCAAA-ACCAGCAGAACGCGGTTCAT-----ATTTGCTGTGAGTAGGTGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12123931 108 - 243199373 CAGCTTCATGTGAGATGAGCCTT--TATTTGTTATGGCTTCAAGTTC--TCTGTCTTTCTTTGTGCAGCAAAAACTAGCAGAGC----TTTAT-ATGTCTTTGCTGTTAACAGGTGC i hg19.chr2 C 0 I 429 s panTro4.chr2B 12062658 108 - 247518478 CAGCTTCATGTGAGATGAGCCTT--TATTTGTTATGGCTTCAAGTTC--TCTGTCTTTCTTTGTGCAGCAAAAACTAGCAGAGC----TTTAT-ATATCTTTGCTGTTAACAGGTGC i panTro4.chr2B C 0 I 8 s gorGor3.chr2B 12224478 108 - 131632457 CAGCTTCATGTGAGATGAGCCTT--TATTTGTTATGGCTTCAAGTTC--TCTGTCTTTCTTTGTGCAGCAAAAACTAGCAGAGC----TTTAT-ATGTCTTTGCTGTTAACAGGTGC i gorGor3.chr2B C 0 I 265 s nomLeu2.GL397366 2846599 106 - 6458163 CAGCTTCATGTGAGATGAGCCTT--TATTTGTTATGGCTTCAAGT----TCTGTCTTTCTTTGTGCAGCAAAAACTAGCAGAGC----TTTAT-ATATCTTTGCTGTTAACAGGTGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817824 108 - 106825570 CAGCTTTATGTGAGATGGGCCTT--TATTTGTAATGGCTTCAAATCC--TCTGTCTTTCTTTGTGCAGCAAAAGCTAGCAGAGC----TTTAT-ATATCTTTGCTGTTAACAGGTGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11724564 108 - 158406734 CAGCTTCATGTGAGATGGGCTTT--TAGTTGTTACGGCTCCAAGCCC--GCTGTCTTTCCTTGTGCGGCAAAGACTAGCAGAGC----TTTAT-ATATCTTTGCTGTTAACCGATGC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66908300 108 - 84719076 CAGCCTTTTGTGAGATG-GCCTT--TATTTGTTATGGCTTCAAGTCC-TTCTGACTTTCTTAGTGCAGCAAAAACTAGCCGAAC----TTTGT-CTACCTTTGCTGTTAACACTTGC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 2962 187 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=-15975.000000 s mm10.chr1_GL456221_random 80863 6 + 206961 ATAGGT------------------ s rn5.chr9 29213636 6 - 121549591 ATAGGT------------------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325819 1 + 10418462 -----T------------------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 12124468 6 - 243199373 ACAGGT------------------ i hg19.chr2 I 429 C 0 s panTro4.chr2B 12062774 24 - 247518478 ACAGGCTAGCTCCTGCTTTCTTCA i panTro4.chr2B I 8 C 0 s nomLeu2.GL397366 2846705 1 - 6458163 -----------------------G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817932 5 - 106825570 -TAGGA------------------ i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11724672 1 - 158406734 -----------------------T i calJac3.chr6 C 0 C 0 s equCab2.chr6 66908408 1 - 84719076 -----------------------T i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e gorGor3.chr2B 12224586 265 - 131632457 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 2962 187 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=10609.000000 s mm10.chr1_GL456221_random 80869 4 + 206961 AACA s rn5.chr9 29213642 4 - 121549591 AACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325820 4 + 10418462 AGCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12124474 4 - 243199373 AACA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12062798 4 - 247518478 AACA i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 2846706 4 - 6458163 AGCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12817937 4 - 106825570 AGCA i rheMac3.chr12 C 0 I 312 s calJac3.chr6 11724673 4 - 158406734 AGCA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66908409 4 - 84719076 AGCA i equCab2.chr6 C 0 C 0 s choHof1.scaffold_211216 3149 4 - 3719 TCCA i choHof1.scaffold_211216 I 187 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e gorGor3.chr2B 12224586 265 - 131632457 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=2323.000000 s mm10.chr1_GL456221_random 80873 3 + 206961 ATA s rn5.chr9 29213646 3 - 121549591 ATA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325824 3 + 10418462 GTA i speTri2.JH393335 C 0 I 96 s hg19.chr2 12124478 1 - 243199373 --A i hg19.chr2 C 0 I 2 s panTro4.chr2B 12062802 1 - 247518478 --A i panTro4.chr2B C 0 I 31 s nomLeu2.GL397366 2846710 1 - 6458163 --A i nomLeu2.GL397366 C 0 I 2 s calJac3.chr6 11724677 1 - 158406734 --A i calJac3.chr6 C 0 I 2 s equCab2.chr6 66908413 1 - 84719076 --A i equCab2.chr6 C 0 I 2 s choHof1.scaffold_211216 3153 3 - 3719 GCA i choHof1.scaffold_211216 C 0 I 12 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817941 312 - 106825570 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e gorGor3.chr2B 12224586 265 - 131632457 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=2976.000000 s mm10.chr1_GL456221_random 80876 2 + 206961 AC s rn5.chr9 29213649 2 - 121549591 AC i rn5.chr9 C 0 C 0 s hg19.chr2 12124481 2 - 243199373 AC i hg19.chr2 I 2 I 18 s panTro4.chr2B 12062834 2 - 247518478 GC i panTro4.chr2B I 31 I 22 s nomLeu2.GL397366 2846713 2 - 6458163 AC i nomLeu2.GL397366 I 2 C 0 s calJac3.chr6 11724680 2 - 158406734 AC i calJac3.chr6 I 2 C 0 s equCab2.chr6 66908416 2 - 84719076 AC i equCab2.chr6 I 2 C 0 s choHof1.scaffold_211216 3168 2 - 3719 GT i choHof1.scaffold_211216 I 12 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325827 96 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817941 312 - 106825570 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e gorGor3.chr2B 12224586 265 - 131632457 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=-555.000000 s mm10.chr1_GL456221_random 80878 2 + 206961 -AA s rn5.chr9 29213651 2 - 121549591 -AA i rn5.chr9 C 0 C 0 s panTro4.chr2B 12062858 2 - 247518478 -AA i panTro4.chr2B I 22 C 0 s nomLeu2.GL397366 2846715 2 - 6458163 -AG i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11724682 2 - 158406734 -AG i calJac3.chr6 C 0 C 0 s equCab2.chr6 66908418 2 - 84719076 -AG i equCab2.chr6 C 0 C 0 s choHof1.scaffold_211216 3170 2 - 3719 GA- i choHof1.scaffold_211216 C 0 n 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325827 96 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817941 312 - 106825570 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e gorGor3.chr2B 12224586 265 - 131632457 I e hg19.chr2 12124483 18 - 243199373 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=1607.000000 s mm10.chr1_GL456221_random 80880 5 + 206961 GATGG s rn5.chr9 29213653 5 - 121549591 AGCGG i rn5.chr9 C 0 C 0 s panTro4.chr2B 12062860 5 - 247518478 AATAA i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 2846717 5 - 6458163 GCTAG i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11724684 5 - 158406734 GCTGG i calJac3.chr6 C 0 I 4068 s equCab2.chr6 66908420 5 - 84719076 GCTAG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325827 96 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817941 312 - 106825570 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e gorGor3.chr2B 12224586 265 - 131632457 I e hg19.chr2 12124483 18 - 243199373 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=205.000000 s mm10.chr1_GL456221_random 80885 1 + 206961 T s rn5.chr9 29213658 1 - 121549591 T i rn5.chr9 C 0 C 0 s panTro4.chr2B 12062865 1 - 247518478 C i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 2846722 1 - 6458163 C i nomLeu2.GL397366 C 0 I 384 s equCab2.chr6 66908425 1 - 84719076 C i equCab2.chr6 C 0 I 340 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325827 96 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817941 312 - 106825570 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e gorGor3.chr2B 12224586 265 - 131632457 I e hg19.chr2 12124483 18 - 243199373 I e calJac3.chr6 11724689 4068 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=2300.000000 s mm10.chr1_GL456221_random 80886 28 + 206961 CAgagctggagaggtggctcagtgtcta s rn5.chr9 29213659 28 - 121549591 GAgggctagagaggtggtccagtgccta i rn5.chr9 C 0 C 0 s panTro4.chr2B 12062866 28 - 247518478 CACAGATAGAGCAGTTAAAGAATATCCA i panTro4.chr2B C 0 I 36 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325827 96 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817941 312 - 106825570 I e equCab2.chr6 66908426 340 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846723 384 - 6458163 I e gorGor3.chr2B 12224586 265 - 131632457 I e hg19.chr2 12124483 18 - 243199373 I e calJac3.chr6 11724689 4068 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=3856.000000 s mm10.chr1_GL456221_random 80914 25 + 206961 agagcagtgactg--ttcttccatagg s rn5.chr9 29213687 25 - 121549591 agagcactgactg--ctcttccagagg i rn5.chr9 C 0 C 0 s speTri2.JH393335 6325923 25 + 10418462 AGAGCAGTGAGTG--AATATCCATATG i speTri2.JH393335 I 96 I 131 s panTro4.chr2B 12062930 27 - 247518478 ATAGCAAAGACAGTCCCCTTCATTATG i panTro4.chr2B I 36 I 3 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817941 312 - 106825570 I e equCab2.chr6 66908426 340 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846723 384 - 6458163 I e gorGor3.chr2B 12224586 265 - 131632457 I e hg19.chr2 12124483 18 - 243199373 I e calJac3.chr6 11724689 4068 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=1928.000000 s mm10.chr1_GL456221_random 80939 43 + 206961 atctgagttcaattcctaccacctatatggtagctcgcaacca------------------------------ s rn5.chr9 29213712 43 - 121549591 atctgaattcaactcctaccacctttatagtcgctcacaacca------------------------------ i rn5.chr9 C 0 C 0 s panTro4.chr2B 12062960 67 - 247518478 ATCAGATTTCAATATC-ACCACCTT-----CCGCTCTCAGCTTCATTCCTTGAGCAGGGGCTGCTGGGAGCAG i panTro4.chr2B I 3 I 4 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325948 131 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817941 312 - 106825570 I e equCab2.chr6 66908426 340 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846723 384 - 6458163 I e gorGor3.chr2B 12224586 265 - 131632457 I e hg19.chr2 12124483 18 - 243199373 I e calJac3.chr6 11724689 4068 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=5620.000000 s mm10.chr1_GL456221_random 80982 27 + 206961 tctgtaactctaatcacaaggtatctg s rn5.chr9 29213755 27 - 121549591 tctgtaactccaagcccaaggtatctg i rn5.chr9 C 0 C 0 s panTro4.chr2B 12063031 25 - 247518478 TATGTGACTACAGT--CATGATACCCA i panTro4.chr2B I 4 I 31 s gorGor3.chr2B 12224851 25 - 131632457 TATGTGACTATAGT--CATGATACCCA i gorGor3.chr2B I 265 I 31 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325948 131 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12817941 312 - 106825570 I e equCab2.chr6 66908426 340 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846723 384 - 6458163 I e hg19.chr2 12124483 18 - 243199373 I e calJac3.chr6 11724689 4068 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=20244.000000 s mm10.chr1_GL456221_random 81009 32 + 206961 ataccctcttc-------------------------------------------------tagcctttgcag-gagccaagc s rn5.chr9 29213782 32 - 121549591 acaccctcttc-------------------------------------------------tggcctttgcag-gagccaggc i rn5.chr9 C 0 C 0 s panTro4.chr2B 12063087 82 - 247518478 GCACCTTCTTCACTCACTTCTCTTCCATCCATAAGATAATCTCTCTAAAAGGATCAGACTGAGCCTCTGCTGTGGGGCAGTT i panTro4.chr2B I 31 C 0 s gorGor3.chr2B 12224907 82 - 131632457 GCACCTTCTTCACTCACTTCTCTTCCATCCATAAGATAATCTCTCTAAAAGGGTCAGACTGAGCCTCTGCTGTGGGGCAGTT i gorGor3.chr2B I 31 C 0 s rheMac3.chr12 12818253 82 - 106825570 GTACCCTCTTCACTCACTTCTCTTCCATCCATAAGATAATCTCTCTAAAAGGATCAGACTGAGCCTCTGCTGTGGGGCAGTT i rheMac3.chr12 I 312 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325948 131 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66908426 340 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846723 384 - 6458163 I e hg19.chr2 12124483 18 - 243199373 I e calJac3.chr6 11724689 4068 - 158406734 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=3021.000000 s mm10.chr1_GL456221_random 81041 4 + 206961 atgc s rn5.chr9 29213814 4 - 121549591 atac i rn5.chr9 C 0 C 0 s panTro4.chr2B 12063169 4 - 247518478 GTGC i panTro4.chr2B C 0 I 10 s gorGor3.chr2B 12224989 4 - 131632457 GTGC i gorGor3.chr2B C 0 I 10 s rheMac3.chr12 12818335 4 - 106825570 GTGC i rheMac3.chr12 C 0 I 10 s calJac3.chr6 11728757 4 - 158406734 ATCC i calJac3.chr6 I 4068 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325948 131 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66908426 340 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846723 384 - 6458163 I e hg19.chr2 12124483 18 - 243199373 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=-829.000000 s mm10.chr1_GL456221_random 81045 1 + 206961 -a s rn5.chr9 29213818 1 - 121549591 -a i rn5.chr9 C 0 C 0 s calJac3.chr6 11728761 1 - 158406734 C- i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325948 131 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12818339 10 - 106825570 I e equCab2.chr6 66908426 340 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2846723 384 - 6458163 I e gorGor3.chr2B 12224993 10 - 131632457 I e panTro4.chr2B 12063173 10 - 247518478 I e hg19.chr2 12124483 18 - 243199373 I e papHam1.scaffold15394 40689 1844 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=9842.000000 s mm10.chr1_GL456221_random 81046 4 + 206961 tgtg s rn5.chr9 29213819 4 - 121549591 cgtg i rn5.chr9 C 0 C 0 s panTro4.chr2B 12063183 4 - 247518478 TGTG i panTro4.chr2B I 10 C 0 s gorGor3.chr2B 12225003 4 - 131632457 TGTG i gorGor3.chr2B I 10 C 0 s nomLeu2.GL397366 2847107 4 - 6458163 TGTG i nomLeu2.GL397366 I 384 C 0 s rheMac3.chr12 12818349 4 - 106825570 TGTG i rheMac3.chr12 I 10 C 0 s papHam1.scaffold15394 42533 4 + 58077 TGTG i papHam1.scaffold15394 I 1844 I 2323 s calJac3.chr6 11728762 4 - 158406734 TGTG i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325948 131 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66908426 340 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12124483 18 - 243199373 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=20989.000000 s mm10.chr1_GL456221_random 81050 33 + 206961 atgcacagacacacatgcaggcataa-cac-----------acac s rn5.chr9 29213823 44 - 121549591 gtacacagacacacatgcaggcataa-cacccatagacataaaac i rn5.chr9 C 0 C 0 s panTro4.chr2B 12063187 28 - 247518478 ----ATGGTCGCACAGGTAACAATAACCAC-----------AA-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225007 28 - 131632457 ----ATGGTCGCACAGGTAACAATAACCAC-----------AA-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847111 28 - 6458163 ----ATGGTCGCACAGGTAACAATAACCAC-----------AA-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12818353 28 - 106825570 ----ATGGTCACGTAGGTAATAATAACCAC-----------AA-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11728766 28 - 158406734 ----ATGGTCACCCAGGTAACAATAACCAC-----------AA-- i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6325948 131 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66908426 340 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12124483 18 - 243199373 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=-742.000000 s mm10.chr1_GL456221_random 81083 2 + 206961 ---tt s rn5.chr9 29213867 2 - 121549591 ---tt i rn5.chr9 C 0 C 0 s speTri2.JH393335 6326079 2 + 10418462 ---TC i speTri2.JH393335 I 131 C 0 s panTro4.chr2B 12063215 5 - 247518478 GTTGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225035 5 - 131632457 GTTGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847139 5 - 6458163 GTTGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12818381 5 - 106825570 GCTAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11728794 5 - 158406734 GTTGG i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66908426 340 - 84719076 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12124483 18 - 243199373 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=-2918.000000 s mm10.chr1_GL456221_random 81085 17 + 206961 ---------taaaaatgataacaaGG s rn5.chr9 29213869 17 - 121549591 ---------taaaaCTTAAACTAAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6326081 17 + 10418462 ---------TGTAAGTGGGTCCGAGT i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 12063220 8 - 247518478 ---------TAAAAATC--------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225040 8 - 131632457 ---------TAAAAATC--------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847144 8 - 6458163 ---------TAAAAATC--------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12818386 8 - 106825570 ---------TAAAAATC--------- i rheMac3.chr12 C 0 I 6 s calJac3.chr6 11728799 8 - 158406734 ---------CAAAAATC--------- i calJac3.chr6 C 0 C 0 s equCab2.chr6 66908766 16 - 84719076 TCACGATGACACAAGT---------- i equCab2.chr6 I 340 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12124483 18 - 243199373 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=1382481.000000 s mm10.chr1_GL456221_random 81102 641 + 206961 GGGTCAGAT-CTAGGTGGAACCCTACGGGCTGGCAGACCCCTG-----------CCTTCTCTCCCTGCTATCCAATTTCTCCAGCTGACTTTCCTCTGCATTTTCTCTTCGGTCCATGTTCACCTCTGATGTGAATTCCGTTTCTTTTGCTAGTGGTAAAAGATGACTCTCCAGCAGCAAATGACCTGGCAATGGCCCAGGAAGTACCCTGCACACCTGCAAACAAGAAAGGTACAGACATCCTTTCCC------ATGTGA------------------CGCTTCCTGTTCTTCTAGCTGTAGCACATCCT------AGCATCCATGATGTGAGCATCCATTGTGTGTCTGCAATCACATGG------CGTCTCCTCATTTTCTTCTCACTCCGCCTTCCTCAAAGGCTTTGC-AAAAATTAT-AGGTAACAAGAAGGCACTTAGACATATTGAACCAAGCATTGCTCAAATTCA------CTGAACT-CC-------------CATCCACAACTGCTTGGTGTGACTGGTACACTAGCCTCC---CCCAGAAGGAAAATGC-----------------TTCCTGGTAAATCATAGGCAGGCAACATCCATTATCTGTCACTTAAACCTCATGGTGGCAAGCAGGTTGGATGTCCACC--TGACTACCTAT---TCCCACCTCGCCTTTGGCGCTCTCCCATCTTCTACTCTGAGATGTCACCAGTCAATTAAAAT s rn5.chr9 29213886 607 - 121549591 GGGTCAGGT-CAAGGTGGAGCCCTATGGGCTGGCAGATCCCTG------------CTTCCCTCCCTGCTCTTCGAGTTCTCCAACTGGCTTTCCTCTGCACTTTCTCTTCAGTCCATTCTGACTTCTGGTGTGAATTCTGTTTCTTTTGCCAGTGGTTCAAGATAATTCTCCAGCACCAAATGACCCGGAAGTGCCCCAGGAAGCTCCCTGCACACCTGCAAACAAGAAAGGTACAGCCATCCTTTCCT------GTGCCA------------------TGCTCCCTG---TTCTAGCTGCGGCGCATCCC------AGCATCC------------------CTGTTTCTGCAATGACACAG------CATTTCCTCGTTTTCTTCTCACTCTGCCTTCCTCAAAGGCCTTGT-GAAAAGTAT-AGGCGACAAGAAGGCACTTAGACATATTGACCCAAGCATTGCTCAAATTCA------CTGAACT-CC-------------TATCCACAATTGCTTAGTGTGACTGGTACACTCTCCTCCCCGCCCCGGAGGACACCGC-----------------TTCCTGGTAAGTCATATGCAGGTGTCATC--------GTCACTTAAACCTCACAGTAGCAAGCAGGTTGGATGTCCACC--TGGCTGCCTAC---TCCCATCTCGCCT-------TCTCCCATCGTCTACTCTGAGGTGTCATCGTTCAATTAAAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6326098 627 + 10418462 TGGCACAGT-CAAGGAAGAACCCTCCGGCCT-GCAGGTTCCGAG---------GCCTGCAGGGCATGCCCTC-----TCTCCCTTCGACTCCCCTGGGCACTTTCTCTTCCGCCTCTTCTGAGCTCTGAGAGGAATTTTGTGTCTTTTGTCAGTGGTGACAGAGAATTCTCCAGAGTCAAATGACCCAGAGGAGCCCCACGAGGCACCTAGCACACCTCCAAAGAAGAAAGGTAAGGATTTCCTTCCTCTT-TAGATGTCAAGAGAGTGAATTTGGAGTTGCTCTCTGTGGTTCTGAT-----CACATCTTGTCAAAAGCAACCACTATGTGTCC-------CTGGTCCTG--ATGGCCGAG--------------------------ACTCCACCTTCCTCAAAGGCCTTTCTAGAAACTGT-GACAAACCAGAAGGCATTTAGACACGTGGAAATAAGCAACTGTCAGAATCGCCTGTTCCGAAGC-CCTCCG--AGGCCTGTATCCACAGTTTCTTAGCATGTTAGTCACACCAATTTCT-TGAGCTGAAGGTTGCTTC------------------TCCTGA------ACAGCCAGCCATTCTCTGCCATCCGTCACCCACACCT----GTGG-------------TCCACACC--TCGCCACCCTC-GACCCTATCCAGTCTCTTG---CTCCCCATCCTCTCCTTTGAGGCTCAGCCATTCAATTAAAAC i speTri2.JH393335 C 0 I 16 s hg19.chr2 12124501 708 - 243199373 AAGACAGAG-CCAGG--GAATTCTTAGGGCAAGCAGATTCCCGGCCCTGGGCTGCATGTACTTTCTACTTTTCTAGTTCTTGCATTGACTTCCCTCAGCACTTTCTCTTCACTGGAT-CTGAGCTCTGAAATGACTTATATTTCTTTTGTCAGAGATAAGAGATAATTCTCCAGAACCAAATGACCCAGAAGAGCCCCAGGAGGTGTCCAGCACACCTTCAGACAAGAAAGGTAAGAAAAGCCTTTCTTCTGTAGAGGTCAGAAGGGTGAATTCAGAGTTGCTTTCTGTTTTTCTGAC-----TGTATCTTGTCAAGAGCA-CCACTATGTGACC-------ACAGTCCTG--ATGCCACACACAGTTCGTTTCTGCAGTTTCCATTTGCTGCATCTTCCAAAAAGGCCTTTATGAAAATTATCAGGAAACCAGAAGGCATTTGGGGGTATTGAAAtatgcca---ttggaattgcctgttctgaaaa-aatcaa--tctcctatattcacaacttcttagagtgttaattgcacttccctct-ttaactgaaagttggttccccagagaggaacccacttcctcttaagacatggctaggcattctctgccatccatcactcacacctcatggtgagagacaggttagatgtctgtcctttgctgcctactggccccatccagccccttcc--tccctgatcctctcctttgagtcttaaccattcaattaaaat i hg19.chr2 I 18 C 0 s panTro4.chr2B 12063228 708 - 247518478 AAGACAGAG-CCAGG--GAATTCTTAGGGCAAGCAGATTCCCAGCCCTGGGCTGCATGTACTTTCTACTTTTCTAGTTCTTGCATTGACTTCCCTCAGCACTTTCTCTTCACTGGAT-CTGAGCTCTGAAATGACTTATATTTCTTTTGTCAGAGATAAGAGATAATTCTCCAGAACCAAATGACCCAGAAGAGCTCCAGGAGGTGTCCAGCACACCTTCAGACAAGAAAGGTAAGAAAAGCCTTTCTTCTGTAGAGGTCAGAAGGGTGAATTCAGAGTTGCTTTCTGTTTTTCTGAC-----TGTATCTTGGCAAGAGCA-CCACTATGTGACC-------ACAGTCCTG--ATGCCACACACAGTTCGTTTCTGCAGTTTCCATTCACTGCATCTTCCAAAAAGGCCTTTATGAAAATTATCAGGAAACCAGAAGGCATTTGGGGGTATTGAAAtatgcca---ttggaattgcctgttctgaaaa-aatcaa--tctgctatattcacaacttcttagagtgttaattgcacttccctct-ttaactgaaagttggttccccagagaggaacccacttcctcttaagacatggctaggcattctctgccatccatcactcacacctcatggtgagagacaggttagatgtccgtcctttgctgcctactgaccccatccagccccttcc--tccctgatcctctcctttgagtcttaaccattcaattaaaat i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225048 699 - 131632457 AAGACAGAG-CCAGG--GAATTCTTAGGGCAAGCAGATTCCCAGCCCTGGGCTGCATGTACTTTCTACTTTTCTAGTTCTTGCATTGACTTCCCTCAGTACTTTCTCTTCACTGGAT-CTGAGCTCTGAAATGACTTATATTTCTTTTGTCAGAGATAAGAGATAATTCTCCAGAACCAAATGACCCAGAAGAGCACCAGGAGGTGTCCAGCACACCTTCAGACAAGAAAGGTAAGAAAAGCCTTTCTTCTGTAAAGGTCAGAAGGGTGAATTCAGAGTTGCTTTCTGTTTTTCTGAC-----TGTATCTTGTCAAGAGCA-CCACTATGTGACC-------ACAGTCCTG--ATGCCACACACAGTTCGTTTCTGCAGTTTCCATTCACTGCATCTTCCAAAAAGGCCTTTATGAAAATTATCAGGAAACCAGAAGGCATTTGGGGGTATTGAAAtatgcca---ttggaattgcctgttctgaaaa-aatcag--tctcctatattcacaacttcttagggtgttaattgcacttccctct-ttaactgaaagttggttccccagagaggaacccacttc---------aatggctaggcattctctgccatccatcactcacacctcatggtgagagacaggttagatgtccgtcctttgctgcctactgaccccatccagccccttcc--tccctgatcctctcctttgagtcttaaccattcaattaaaat i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847152 672 - 6458163 AAGACAGAG-CCAGG--GAATTCTTAGGGCGAGCAGATTCCCAGCCCTGAGCTGCATGTACTTTCTACTTTTCTAGTTCTTCCATTGACTTCCCTCAGCACTTTCTCTTCACTGGAT-CTGAGCTCTGAAATAACTTATATTTCTTTTGTCAGAGATAAGAGATAATTCTCCAGAACCAAATGATGCAGAAGAGCCCCAGGAGGTGTCCAGCACACCTCCAAACAAGAAAGGTAAGAAAAGCCTTTCTTCTGTAGAGGTCAGAAGGGTGAATTCAGAGTTGCTTTCTGTTTTTCTGAC-----TGTATCTTGTCAAGAGCA-CTACTATGTGACC-------ACGGTCCTG--ATGCCACACACAGTTTGTTTCTGCAGTTTCCGTTCACTGCATCTTCCAAAAAGGCCTTTATGAAAATTATCAGGAAACCAGAAGGCATTTGGGG------------------------ATTGCCTGTTCTGAAAA-AATCAA--TCTCCTATATTCACAACTTCTTAGAGTGTTAATTGCACTTCCCTCT-TTAACTGAAAGTTGGTTCCCCAGAGAGGAACCCACTTCCTCTTAAGACATGGCTAGGCATTCTCTGCCG---------------TCATGGTGAGAGGCCCCTTAGATGTCCACCCTTTGCTGCCTACTGACCCCATCCAGCCCCTTCC--TCCTCGATCCTCTCCTTTGAGGCTTAACCATTCAATTAAAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12818400 695 - 106825570 ------CAG-CCAGG--GAATTCTTAGGGCTATCAGCTTCCCAGCCCTGGGCTGCATGTACTTTCTACTTTTCTAGTTCTTCCATTGACTTCCCTCAGCACTTTCTCTTCACTGGAT-CTGAGCTCTGAAGTGACTTATATTTCTTTTGTCAGAGATAAGAGATGATTCTCCAGAACCAAATGACCCAGAAAAGCCCCAGGAGGTGTCCAGCACACCTTCAAACAAGAAAGGTAAGGAAAGCATTTCTCCTGTAGAGGTCAGAAGGGTGAATTCTGAGTTGCTTTCTGTTTTT----C-----TGTGTCTTGTCAAGAGCA-CCACTATGTGACC-------ACAGTCCTG--ATGCCACACGCAGTTTGTTTCTGCTATTTCCATTCACTGCATCTTCCAGAAAGGTCTTTATGAAAATTATCAGGAAACCAGAAGGCATTTGGGGATATTGAAATATGCCA---TTGGAATTGCCTTTTCTGAAAATAATCAA--TCTCCTATATTCACAACTTCT----GTGTTAATTGCACTTCCGTCT-TTAACTGAAAGTTGGTTCCCCAGAGAGGAACCCACTTCCTCTTAAGACATGGCTGGGCATTCTCTGCCATCCATCACTCACACCTCATGGTGAGAGGCAAGTTAGATGTCCATCCTTTGCTGCCTACTGACCCCATCCAGCCCCTGCC--TCCCTGATCCTCTCCTTTGAGGCTTAACCATTCAATTAAAAT i rheMac3.chr12 I 6 C 0 s calJac3.chr6 11728807 706 - 158406734 AAGACAGAACCCGGG--GAACCCCTAGGGCTAGCAGATCCCCAGGCCCGGGCTGCATGCACTTTCTACCTTTCTAGTTCTTCCATTGATTTCCCTCAGCACTTTCTCTTCACCTAAT-TTGAGCTCTGAAGTGACTTATATTTC-TTTGTCAGAGATAAGAGATGATTCTCTAGAACCAAATGACTCAGAAGAGCCCCAGGAGGTATCCAGCACACCTTCAAAGAAGAAAGGTAAGGAATGCCTTTCTCCTGTAGATATCGGAAGGGTGAATT-AGAGTTGCTTTCTGTTTATCTGAC-----TGTATCTTGTCAAGAGCA-CCGCTATGTGACC-------ACAGTCCTG--ATGCCAAGCACAGTTTGTTTCTGCAGTTTTCTTTCACTGCATCTTCCATAAAGGCCTTTATGAAAATTATCGGACAACCAGAAGGCA-TCGTGGATATTGAAAtatgcca---ttggaattgcctgtcctgaaaaaaattag--tct-ctatatccacaacttcttagagtgttaattgcaccttcctct-ttaactggaagttggttccccagagaggacccgacttcctcttaagacatggagggacattctctgtcatccatcactcacacctcatggtgggaggcaggttagatgtccatcctttgctgcctccagaccccatctagccccttcc--tcccgcatcctctcctttgaggcttaaccattcagttaaaat i calJac3.chr6 C 0 C 0 s equCab2.chr6 66908782 705 - 84719076 TGGTCAAAT-CAAGG--CAACCCTGCAAGCTGGCAGGTTCCCAGCCCTG-TCTACACACACTCATCACCCTCCTGGGTCTCCCATTGATCTCCCTTGGCACTTTCTCTTCAGCCCTTTCTGAGCTCTGAAATGAATTCTATTTCTTCTGTCAGTGATACGAGATGATTCTCCTGAACCAAATGATGCAGAAGAGCCCCAGGAGGCATCCAGCACACCTCCCACAAAGAAAGGTAATGATTGCCTTTGTCCTGGAGATGTCTGGAGGGTGAATTTGGAGCTGCATTCTGTTCTTCCGAT-----TATATCTTGTCATATGTACCCATTATGTGATT-------ATTGTCAAG--ACGCC-CGTACAGTTTGTTTCTGCAATGCCGATTCATTGCATCTTCCTCTAAGGCCTTCATGAAAATTATAGGGAAGTGGGAAGGCATTTAGGACCATTGAAAtatgcactcattggaactgcctgttcagaaat-catcaaagtctcctatagccacaacttcttggagggttagttgctcctccctct-ttaactgaaagttgtttc-ccagagaggactctgcttcctcttaagacaaggctgcatattctctgctatcagtc------tcctcatggtagaaggtaggttggatgtccaccccttgttacccactgcccccagccagccgcttgc--tccctgatcctctcctttgaggcttaaccattcaagtgaaa- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=3773.000000 s mm10.chr1_GL456221_random 81743 2 + 206961 GT s rn5.chr9 29214493 2 - 121549591 CT i rn5.chr9 C 0 C 0 s hg19.chr2 12125209 2 - 243199373 gt i hg19.chr2 C 0 I 15 s panTro4.chr2B 12063936 2 - 247518478 gt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225747 2 - 131632457 gt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847824 2 - 6458163 GT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12819095 2 - 106825570 GT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11729513 2 - 158406734 gt i calJac3.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6326725 16 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66909487 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=7372.000000 s mm10.chr1_GL456221_random 81745 31 + 206961 GTCATTggtctggcaaatggctcactagctc s rn5.chr9 29214495 24 - 121549591 GTTATTGTCC-------tggctcgctggcta i rn5.chr9 C 0 C 0 s panTro4.chr2B 12063938 10 - 247518478 ---------------------tcactcactc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225749 10 - 131632457 ---------------------tcactcactc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847826 10 - 6458163 ---------------------TCACTCACTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12819097 10 - 106825570 ---------------------TTGCTCACTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11729515 10 - 158406734 ---------------------tcactcactc i calJac3.chr6 C 0 C 0 s equCab2.chr6 66909487 9 - 84719076 ----------------------cactcactc i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6326725 16 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e hg19.chr2 12125211 15 - 243199373 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=4413.000000 s mm10.chr1_GL456221_random 81776 17 + 206961 gaggtccttgccaccaa s rn5.chr9 29214519 17 - 121549591 gaggtccctgccaccaa i rn5.chr9 C 0 C 0 s panTro4.chr2B 12063948 8 - 247518478 ---------atcatcaa i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 2847836 8 - 6458163 ---------ATCATCAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12819107 8 - 106825570 ---------ATCATCAA i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6326725 16 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66909496 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e gorGor3.chr2B 12225759 0 - 131632457 C e hg19.chr2 12125211 15 - 243199373 I e calJac3.chr6 11729525 0 - 158406734 C e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=537.000000 s mm10.chr1_GL456221_random 81793 62 + 206961 gcctggtgacctgaatttgatccctgaaacccatatggtggaagaacagacccaactc--acaa s rn5.chr9 29214536 64 - 121549591 gcctggtgatctgaatttgatccctgaaatccatatggcagaagaacagaaacgactcctacaa i rn5.chr9 C 0 C 0 s gorGor3.chr2B 12225759 8 - 131632457 --------------------accctcaa------------------------------------ i gorGor3.chr2B C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6326725 16 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12819115 0 - 106825570 C e equCab2.chr6 66909496 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2847844 0 - 6458163 C e panTro4.chr2B 12063956 0 - 247518478 C e hg19.chr2 12125211 15 - 243199373 I e calJac3.chr6 11729525 0 - 158406734 C e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=999.000000 s mm10.chr1_GL456221_random 81855 55 + 206961 gttgtttcttggcctctccatgtgtaccatggaacatatgcccaACCTCCACATA s rn5.chr9 29214600 55 - 121549591 aatgactcttgacctctgcatgtgaaccaaagaacatgtgtacaacctccacata i rn5.chr9 C 0 C 0 s equCab2.chr6 66909496 9 - 84719076 ------------cctcttcat---------------------------------- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6326725 16 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12819115 0 - 106825570 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2847844 0 - 6458163 C e gorGor3.chr2B 12225767 0 - 131632457 C e panTro4.chr2B 12063956 0 - 247518478 C e hg19.chr2 12125211 15 - 243199373 I e calJac3.chr6 11729525 0 - 158406734 C e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=-6902.000000 s mm10.chr1_GL456221_random 81910 62 + 206961 C--------------------TGATAAATGTCATAATTATGATAATGATAATAATGATAAAAACACTGTGACCTTTCTGATA s rn5.chr9 29214655 82 - 121549591 cccaAAATATCatgttgatgttgatgatgactatgatgacgatgatggcgatgatgatAAAAACACTGTGATCTATCTGATA i rn5.chr9 C 0 C 0 s calJac3.chr6 11729525 20 - 158406734 --------------------ctcatcaatatca------------------------------------------tccaata i calJac3.chr6 C 0 C 0 s equCab2.chr6 66909505 2 - 84719076 -------------------------------ca------------------------------------------------- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6326725 16 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12819115 0 - 106825570 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2847844 0 - 6458163 C e gorGor3.chr2B 12225767 0 - 131632457 C e panTro4.chr2B 12063956 0 - 247518478 C e hg19.chr2 12125211 15 - 243199373 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=1500.000000 s mm10.chr1_GL456221_random 81972 1 + 206961 C s rn5.chr9 29214737 1 - 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6326741 1 + 10418462 C i speTri2.JH393335 I 16 C 0 s hg19.chr2 12125226 1 - 243199373 c i hg19.chr2 I 15 I 2 s calJac3.chr6 11729545 1 - 158406734 c i calJac3.chr6 C 0 C 0 s equCab2.chr6 66909507 1 - 84719076 c i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12819115 0 - 106825570 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e nomLeu2.GL397366 2847844 0 - 6458163 C e gorGor3.chr2B 12225767 0 - 131632457 C e panTro4.chr2B 12063956 0 - 247518478 C e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=284705.000000 s mm10.chr1_GL456221_random 81973 138 + 206961 TGTCATCCATTGGTTTCCCCATTGCTTCCTGGAAGCCTTCCAAGTCT--------GT-TTTCTCCCACCTCAGTTCTTTCCATGGTCCTGGATGTTTTCAAGTGCTG---GGATAGCAGGCAA----ACGATCCAATACTCCAGCTGCTCAAGT s rn5.chr9 29214738 140 - 121549591 TGCCATCCATTGGCTTCCCCATTGCTTCCTAGAAGCCTTCCAAGTCT--------GT-TTTCTCCCGCCTCAGATCTTGCCATGATCCTGGATACCTTCAAGGCATC-ATGGGTAGCAGGCAA----GCCATCCACTACTCCAGCCACTTACGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6326742 139 + 10418462 TCTCATCTGTTGGCTT-CCCGTCCCTCCTTAGTTGGC--CTGAGGCT--------GCATTTCTGTCACCTCAGGTCCCACCTTAGTCCTGGATGCCTGCAGGACCCATGAAGACAGCAGAGGG----GCCGTCCAGTACTCTGGCCTCTCAGCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12125229 138 - 243199373 tatcatccaataatttccccaataatcctt--------tcaaaagct--------gcttttctgtcatttcaagtcccagcatcatcctagatgccttcagggtacacacggataacagacaactctgttatccaatactctggcccctcaaat i hg19.chr2 I 2 C 0 s panTro4.chr2B 12063956 138 - 247518478 tatcatccaataatttccccaataatcctt--------tcaaaggct--------gtttttctgtcatttcaagtcccagcatcatcctagatgccttcagggtacacaaggataacagacaactctgttatctaatactctggcccctcaaat i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225767 138 - 131632457 tatcatccaataatttccccaataatcctt--------tcaaaggct--------gtttttctgtcatttcaagtcccagcatcatcctagatgccttcagggtacacatggataacagacaactctgttatctaatactctggcccctcaaat i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2847844 138 - 6458163 TATCATCCAATAATTTCCCCAATAATCCTT--------TCAAAGGCT--------GTTTTTCTGTCATTTCAAGTCCCAGCATCATCCTAGATGCCTTCAGGGTACACATGGATAACAGACAACTCTGTTATCCCATACTCTGGCCCCTCAAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12819115 138 - 106825570 TATCATCCAATAATTTCCCCAATAATCCTT--------TCAAAGGCT--------GTTTTTCTGTCATTTCAAGTCACAGCATCATCCTAGATGCCTTCAGGGTACACATGGATAACAGACAACTCTGTTATCCAATACTCTGGCCCCTCAAAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11729546 128 - 158406734 ----------taatttccccaataatcctt--------tcaaaggct--------gtttttctgtcatttcaaatcccagcatcttcctagatgccttcagggtacacatggataacaggcaactctgttatcaaatactctggtctctcaaat i calJac3.chr6 C 0 C 0 s equCab2.chr6 66909508 142 - 84719076 tattatctgtcg--ttcccctccatgccccagcagac-ctgaaggctcacttagagttgttctgtcacttcaagtcctgccatcttcctggacaccttcgaggtatacgtgggtaacaggc-------ccatccaataccctgacctctcaa-- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=4500.000000 s mm10.chr1_GL456221_random 82111 1 + 206961 C s rn5.chr9 29214878 1 - 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6326881 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_18102 3576 1 - 49318 C i ochPri2.scaffold_18102 N 0 I 65 s hg19.chr2 12125367 1 - 243199373 c i hg19.chr2 C 0 I 1 s panTro4.chr2B 12064094 1 - 247518478 c i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12225905 1 - 131632457 c i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2847982 1 - 6458163 C i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12819253 1 - 106825570 C i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11729674 1 - 158406734 c i calJac3.chr6 C 0 I 1 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66909650 0 - 84719076 C e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=163290.000000 s mm10.chr1_GL456221_random 82112 72 + 206961 TTTATCTCCTCCCGTCTGGTTCTTGTTTTCCCTTCACAAATTCTTGGTTTCTCTTGCCCAGAAGTCATCCTT s rn5.chr9 29214879 72 - 121549591 TTTATCTCCTCACGTCTGGTTATTTTTTTCCCTTCTCAAATTCTTCATTTCTCATGTCCAAAAGCCATCCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6326882 69 + 10418462 GTCATCTGCTCATTTCCAGTGACTTTTT--CCTCTACAAATTCTTGGCTGCCTGTGCCCAG-AGCAATCCAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12125369 70 - 243199373 ttcatcttctcattttccatgacttttt--cctccaccaattcttggcctcccatacccaaaggcaagctat i hg19.chr2 I 1 C 0 s panTro4.chr2B 12064096 70 - 247518478 ttcatcttctcattttccatgacttttt--cctccaccaatccttggcctcccatacccaaaggcaagctat i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12225907 70 - 131632457 ttcatcttctcattttccatgacttttt--cctccaccaatccttggcctcccatacccaaaggcaagctat i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2847984 70 - 6458163 TTCCTCTTTTCATTTTCCATGACTTTTT--CCTCCACCAATTCTTGGCTTCCCATACCCAAAGGCAAGCTAT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12819255 70 - 106825570 TTCATCTTCTCATTTTCCATGACTTTTT--CCTCCACCAATTCTTGGCCTCCCATATCCAAAGGCAACCTAT i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11729676 70 - 158406734 ttcatcttctcattttccatgacttttt--cctctaccaatttttggccaaccataccaaaaggcagtctat i calJac3.chr6 I 1 C 0 s equCab2.chr6 66909650 63 - 84719076 ------atctcatttccagtgactcctt--cctccacccattcttggcctct-gtgcccaaatgcaatccac i equCab2.chr6 C 0 C 0 e ochPri2.scaffold_18102 3577 65 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=5005.000000 s mm10.chr1_GL456221_random 82184 1 + 206961 A s rn5.chr9 29214951 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6326951 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_18102 3642 1 - 49318 A i ochPri2.scaffold_18102 I 65 I 3509 s hg19.chr2 12125439 1 - 243199373 a i hg19.chr2 C 0 C 0 s panTro4.chr2B 12064166 1 - 247518478 a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225977 1 - 131632457 a i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2848054 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12819325 1 - 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11729746 1 - 158406734 a i calJac3.chr6 C 0 C 0 s equCab2.chr6 66909713 1 - 84719076 a i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=231436.000000 s mm10.chr1_GL456221_random 82185 94 + 206961 GGCTCTACCATTATCTGTTCCCTAGCTTAATTTCCCAAGAACTGATTCAAAGAATTC-TCATTTTAACACTTGTCCTTGAAGCTTGCTCCTTCTA s rn5.chr9 29214952 91 - 121549591 --CCCTACCAATATCTG-ACCCTAGCTTAATTTCCCAATAACTGATTCAAAGAATTC-TCATTTTAATACCTGTCCTTGAAGCTTGTTCCTTCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6326952 85 + 10418462 GGCCTTACCATCACCCAGAC---AGCCTGATTTCCCAGTAATT------AAACATTC-CTCTTCTGATACCTGTTCTTCAAGTTTTCTACAACTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12125440 92 - 243199373 gaccctatcgtcattca-aacctggctcgatttcccaacagttaattt-cagaattc-cttttttgatacctgtccttgagcttttctcctttta i hg19.chr2 C 0 C 0 s panTro4.chr2B 12064167 92 - 247518478 gaccctatcgtcattca-aacctggctcgatttcccaacagttaattt-cagaattc-cttttttgatacctgtccttgagcttttctccttcta i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12225978 92 - 131632457 gaccctatcgtcattca-aacctggctcgatttcccaacagttaattt-cagaattc-cttttttgatacctgtccttgagcttttctccttcta i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2848055 92 - 6458163 GACCCTATCATCATTCA-AACCTGGCTTGATTTCCCAACAGTTAATTT-CAGAATTC-CTTTTTTGATACCTATCCTTGAGCTTTTCTTCTTCTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12819326 92 - 106825570 GACCCTATCATCATTCA-CATCTGGCTCAATTTCCCAACAGTTAATTT-CAGAATTC-CTTTTTTGATACCTATCCTTGAGCTTTTCTCCTTCTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11729747 92 - 158406734 gaccctgtcatcaTTCA-AACCTGGCTCGGTTTCCCAACAGTTAATTT-CAGAATTC-CTTTTTTGATACCTATCCTTGAGCTTTTTTCCTTCTA i calJac3.chr6 C 0 I 946 s equCab2.chr6 66909714 93 - 84719076 ggccctttcttcattca-accctggctcaactccccaataattaattt-aacaattcatttttttcacacctgtccttgaagcttgcttcttctG i equCab2.chr6 C 0 I 8 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=32575.000000 s mm10.chr1_GL456221_random 82279 28 + 206961 G----------TTCAAAACTCTGATATCTTCTTC--CTTC s rn5.chr9 29215043 27 - 121549591 G----------TTC-AACCTCTGATTTCTCCTTC--CTTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6327037 25 + 10418462 TCC--------TTC-AACTTCCGATCTC----TC--CTTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12125532 31 - 243199373 --tagctatcattc-aacctctgatcac----tc--tttc i hg19.chr2 C 0 C 0 s panTro4.chr2B 12064259 27 - 247518478 --tagct----ttc-aacctctgatcac----tc--tttc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12226070 31 - 131632457 --tagctatcattc-aacctctgatcac----tc--tttc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2848147 31 - 6458163 --TAGCTATCATTC-AACCTCCGATCAC----TC--TTTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12819418 33 - 106825570 --TAGCTATCATTC-AACCTCTGATCAC----TCTTTTTC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66909815 23 - 84719076 ----------GTTC-AACTTCTGATATC----TC--CTCC i equCab2.chr6 I 8 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e tarSyr1.scaffold_28366 15536 2583 - 22953 I e calJac3.chr6 11729839 946 - 158406734 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=14817.000000 s mm10.chr1_GL456221_random 82307 4 + 206961 CCAG s rn5.chr9 29215070 4 - 121549591 CCAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6327062 4 + 10418462 TCAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12125563 4 - 243199373 ccag i hg19.chr2 C 0 C 0 s panTro4.chr2B 12064286 4 - 247518478 ccag i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12226101 4 - 131632457 ccag i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2848178 4 - 6458163 CCAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12819451 4 - 106825570 CCAG i rheMac3.chr12 C 0 I 999 s tarSyr1.scaffold_28366 18119 4 - 22953 TCAG i tarSyr1.scaffold_28366 I 2583 C 0 s equCab2.chr6 66909838 4 - 84719076 TCAG i equCab2.chr6 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e calJac3.chr6 11729839 946 - 158406734 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=2552.000000 s mm10.chr1_GL456221_random 82311 1 + 206961 C s rn5.chr9 29215074 1 - 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6327066 1 + 10418462 C i speTri2.JH393335 C 0 I 780 s hg19.chr2 12125567 1 - 243199373 c i hg19.chr2 C 0 I 958 s panTro4.chr2B 12064290 1 - 247518478 c i panTro4.chr2B C 0 I 970 s gorGor3.chr2B 12226105 1 - 131632457 c i gorGor3.chr2B C 0 I 970 s nomLeu2.GL397366 2848182 1 - 6458163 C i nomLeu2.GL397366 C 0 I 952 s tarSyr1.scaffold_28366 18123 1 - 22953 C i tarSyr1.scaffold_28366 C 0 I 1 s equCab2.chr6 66909842 1 - 84719076 C i equCab2.chr6 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12819455 999 - 106825570 I e calJac3.chr6 11729839 946 - 158406734 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=1904.000000 s mm10.chr1_GL456221_random 82312 14 + 206961 -TGATCATTTAAAAA s rn5.chr9 29215075 14 - 121549591 -TGATCCTTTAAAAA i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_28366 18125 13 - 22953 -CAATCCTAAAAAA- i tarSyr1.scaffold_28366 I 1 n 1 s equCab2.chr6 66909843 14 - 84719076 CCAATCttaaaaaa- i equCab2.chr6 C 0 I 6016 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6327067 780 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12819455 999 - 106825570 I e nomLeu2.GL397366 2848183 952 - 6458163 I e gorGor3.chr2B 12226106 970 - 131632457 I e panTro4.chr2B 12064291 970 - 247518478 I e hg19.chr2 12125568 958 - 243199373 I e calJac3.chr6 11729839 946 - 158406734 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=2948.000000 s mm10.chr1_GL456221_random 82326 70 + 206961 GGTTA-GGGTTGAGATCAGAGAGATAACTCAGAGTTAAAACATACACATAT------------------------ACACGCGTGCAAGTGCACAA s rn5.chr9 29215089 95 - 121549591 GGTTAGGGGTTGAGGTTGGAGAGATGGCTTAGGGTTAAGacacacacatatgcgcacacacacacacacacacacacaAGTGTACACGTGTACAC i rn5.chr9 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6327067 780 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12819455 999 - 106825570 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2848183 952 - 6458163 I e gorGor3.chr2B 12226106 970 - 131632457 I e panTro4.chr2B 12064291 970 - 247518478 I e hg19.chr2 12125568 958 - 243199373 I e calJac3.chr6 11729839 946 - 158406734 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=476.000000 s mm10.chr1_GL456221_random 82396 2 + 206961 TT s rn5.chr9 29215184 2 - 121549591 AC i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 2849135 2 - 6458163 TT i nomLeu2.GL397366 I 952 C 0 s rheMac3.chr12 12820454 2 - 106825570 TT i rheMac3.chr12 I 999 C 0 s calJac3.chr6 11730785 2 - 158406734 TT i calJac3.chr6 I 946 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6327067 780 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e gorGor3.chr2B 12226106 970 - 131632457 I e panTro4.chr2B 12064291 970 - 247518478 I e hg19.chr2 12125568 958 - 243199373 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=10070.000000 s mm10.chr1_GL456221_random 82398 15 + 206961 AACAGTCAAAAACAT s rn5.chr9 29215186 15 - 121549591 AATAAGCaaaaatat i rn5.chr9 C 0 C 0 s panTro4.chr2B 12065261 14 - 247518478 -AACACCAAAAGTAA i panTro4.chr2B I 970 I 1 s nomLeu2.GL397366 2849137 15 - 6458163 GAAGGCCAAAAGTAA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12820456 15 - 106825570 GAAGGCCAAAAGTAA i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11730787 15 - 158406734 GAAGGCCAAAAGTAA i calJac3.chr6 C 0 I 1 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6327067 780 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e gorGor3.chr2B 12226106 970 - 131632457 I e hg19.chr2 12125568 958 - 243199373 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=26087.000000 s mm10.chr1_GL456221_random 82413 20 + 206961 AGTTGAATTCTTTAAATAAA- s rn5.chr9 29215201 20 - 121549591 aatttaattttttaaataaa- i rn5.chr9 C 0 C 0 s hg19.chr2 12126526 21 - 243199373 AGCTGAATATCATTGACATAC i hg19.chr2 I 958 C 0 s panTro4.chr2B 12065276 21 - 247518478 AGCTGAATATCATTGACATAC i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12227076 21 - 131632457 AGCTGAATATCATTGACATAC i gorGor3.chr2B I 970 C 0 s nomLeu2.GL397366 2849153 21 - 6458163 AGCTGAATATCACTGACATAC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12820472 21 - 106825570 AGCTGAATATCACTGACATAT i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11730803 21 - 158406734 AGCTGAATATCACTGACATAT i calJac3.chr6 I 1 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6327067 780 + 10418462 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=273097.000000 s mm10.chr1_GL456221_random 82433 158 + 206961 AAGA--CTGACAGCTCTATGTG----ACTATAAAAGACTTTGTTTTGTTTTCTTCTTAGCAAGAAGAAAAAAATGTCCGAACTGGTCAAATTCCAAAAGAGGACGGCAGAAAAAAAAGCCCCGTCAAGATGAGATGATGGGTAAG------------GGGATGCTGGAGGAGACTC s rn5.chr9 29215221 170 - 121549591 aaaaGTTTGAAAGCTTTACATG----ACTATAAAAGAC--TGTTCTCTTTTCTTCTTAGCAAGAAAAAGAAAAAGTTGCATCTGGTCAAATTCCAAAAGAAGACGGCAGAAAAAAAAGCCCCCTCAACATAAGATGATGGGTAAGAAGATGCTGAAAGGGATGCTGGAGGGGGCTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6327847 146 + 10418462 AAGG--CCGGCAGATCTGTATGTGTAACCATAAAAGATTCTTTATCTTTTCTTTTTTAGGAAGAAAAATAAGAAGAAATATCTGGTCAACTCCAAAAAAGAGACGTCAGAAAAAAAGCTGCCC------------GAGAGGTAAC------------AGAATG--AGAGGAGGC-- i speTri2.JH393335 I 780 C 0 s hg19.chr2 12126547 147 - 243199373 AAGA--TTGGGAGATCAATGTTTGTAACTATAAAA-----CATTATCCTTTCTTTTTAGGAAAGAAAAGAAAAAGATGTATCTGGTCAACTCCAAAAAGGAGACATAAGAAAAAAAGCCTCCC------------AGGAggtaagatg---------agagtacaagaggaagct- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12065297 147 - 247518478 AAGA--TTGGAAGATCAATGTTTGTAACTATAAAA-----CATTATCCTTTCTTTTTAGGAAAGAAAAGAAAAAGATGTATCTGGTCAACTCCAAAAAGGAGACATAAGAAAAAAAGCCTCCC------------Aagaggtaagatg---------agagtacaagaggaagct- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12227097 147 - 131632457 AAGA--TTGGGAGATCAATGTTTGTAACTATAAAA-----CATTATCCTTTCTTTTTAGGAAAGAAAAGAAAAAGATGTATCTGGTCAACTCCAAAAAGGAGACATAAGAAAAAAAGCCTCCC------------Aagaggtaagatg---------agagtacaagaggaagct- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2849174 147 - 6458163 AAGA--TTGGGAGGTCAATGTTTGTAATTATAAAA-----CAGTATCCTTTCTTTTTAGGAAAGAAAAGAAAAAGATGTATCTGGTCAACTCCAAAAAAGAGACCTAAGAAAAAAAGCCTCCC------------Aagaggtaagatg---------agagtacaagaggaagct- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12820493 147 - 106825570 AAGA--TTGGGAGATCAATGTTTGTAACTATAAAA-----CATTATCCTTTCTTTTTAGGAAAGAAAAGAAAAAGATGTGTCTGGTCAACTCCAAAAAGGAAACATAAGAAAAAAAGCCTCCC------------AAGAGGTAAGACG---------AGAGTACAAGAGAAAGCT- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11730824 141 - 158406734 AAGA--TTGGCAGATCAATAT------CTATAAAA-----TATTATCCTTTCTTTTTAGGGAAGAAAAGTAAAAGATGTATCTGGTCAACTCCAAAAAAGAGACAGAAGAAAAAAAACCTCCC------------Aagaggtaagatg---------agagtaaaagaagaagct- i calJac3.chr6 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9066565 3372 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=38.000000 s mm10.chr1_GL456221_random 82591 1 + 206961 C s rn5.chr9 29215391 1 - 121549591 T i rn5.chr9 C 0 C 0 s felCat5.chrC1 9069937 1 - 221441202 c i felCat5.chrC1 I 3372 I 2003 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6327993 0 + 10418462 C e turTru2.JH490333 35471 6658 + 53618 I e rheMac3.chr12 12820640 0 - 106825570 C e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2849321 0 - 6458163 C e gorGor3.chr2B 12227244 0 - 131632457 C e panTro4.chr2B 12065444 0 - 247518478 C e hg19.chr2 12126694 0 - 243199373 C e calJac3.chr6 11730965 0 - 158406734 C e papHam1.scaffold15394 42537 2323 + 58077 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=35716.000000 s mm10.chr1_GL456221_random 82592 33 + 206961 AGCA------AGGGGTACAGGAGGAGGCTTCAGCAAAGG---------------------- s rn5.chr9 29215392 38 - 121549591 GGCAGGGCTGGGGGATGCTGGAGGGGGCTCTGGC-AGGG---------------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6327993 25 + 10418462 ------------GGGACCCGCGGGGAGCTCT-TC-AGGC---------------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12126694 39 - 243199373 ------------ggaggctggaaacagctcatgc-agggcttgtaggtcaag--------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12065444 39 - 247518478 ------------ggaggctggaaacagcttatgc-ggggcttgtaggtcaag--------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12227244 39 - 131632457 ------------ggaggctggaaacagctcatgc-agggcttgtaggtcaag--------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2849321 39 - 6458163 ------------ggaggctggaaacagctcatgc-agggcttataggtcaag--------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12820640 39 - 106825570 ------------GGAGGCTggaaacagctcatgc-agggcttataggtcaag--------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11730965 48 - 158406734 ------------ggaggctggagacagctcatgc-agggcttaaaggtcaagctgcgcagg i calJac3.chr6 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 42537 2323 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=-1667.000000 s mm10.chr1_GL456221_random 82625 12 + 206961 CTGTAGAT--------CTGA s rn5.chr9 29215430 12 - 121549591 CTGTGGAT--------CTGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6328018 20 + 10418462 CTGTAGTTGGGAAAGGGGGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12126733 9 - 243199373 ctgtggag--------g--- i hg19.chr2 C 0 I 2 s panTro4.chr2B 12065483 9 - 247518478 ctgtggag--------g--- i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 12227283 9 - 131632457 ctgtggag--------g--- i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 2849360 9 - 6458163 ctgtggag--------g--- i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 12820679 9 - 106825570 ctgtggag--------g--- i rheMac3.chr12 C 0 I 2 s papHam1.scaffold15394 44860 9 + 58077 ctgtggag--------g--- i papHam1.scaffold15394 I 2323 I 5473 s calJac3.chr6 11731013 2 - 158406734 --gc---------------- i calJac3.chr6 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=99844.000000 s mm10.chr1_GL456221_random 82637 65 + 206961 TGGAGTTCGTTCTGAACTCACTGGATAGGCAGG-----CACACAGGAGTTCTGGTCAGCACAG-----CGAACTG s rn5.chr9 29215442 61 - 121549591 TGCCACTTGTTCTGAACTTACTGGAT----AGG-----CACACAGGAGTTCTAGGCAGCGCAG-----TGATCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6328038 75 + 10418462 TGAATCGTATTCCAAAAGCAGTCGGGGGGGGggggtgtcattgaagagctctcagcagtcaagggacctgacctg i speTri2.JH393335 C 0 C 0 s hg19.chr2 12126744 61 - 243199373 tgaattttattctaaatgcaatggga----agc-----cattgaagagatttagtcagtgaag-----tgacaca i hg19.chr2 I 2 C 0 s panTro4.chr2B 12065494 61 - 247518478 tgaattttattctaaatgcaatggga----agc-----cattgaagagatttagtcagtgaag-----tgacaca i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 12227294 61 - 131632457 tgaattttattctaaatgcaatggga----agc-----cattgcagagatttagtcagtgaag-----tgacaca i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 2849371 61 - 6458163 ttaattttattctaaatgcaatggga----agc-----cattgaagagatttagtcagtgaat-----tgacaca i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 12820690 61 - 106825570 tgaattttattctaaatgcaatggga----agc-----cattgaagagatttagtcagtgaag-----tgacaca i rheMac3.chr12 I 2 C 0 s calJac3.chr6 11731015 61 - 158406734 tgaattttattctagatgcaatggga----agc-----cactgaagagatttaatcggtggag-----tgacaga i calJac3.chr6 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 35471 6658 + 53618 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=-10025.000000 s mm10.chr1_GL456221_random 82702 6 + 206961 GCTTTA- s rn5.chr9 29215503 6 - 121549591 GCTTTA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6328113 6 + 10418462 atttta- i speTri2.JH393335 C 0 C 0 s hg19.chr2 12126805 4 - 243199373 atgt--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12065555 4 - 247518478 acgt--- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12227355 4 - 131632457 acgt--- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2849432 4 - 6458163 atgc--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12820751 4 - 106825570 atcc--- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11731076 4 - 158406734 atct--- i calJac3.chr6 C 0 C 0 s turTru2.JH490333 42129 5 + 53618 atcc--a i turTru2.JH490333 I 6658 I 3275 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=65579.000000 s mm10.chr1_GL456221_random 82708 47 + 206961 AATTTCAGCAGACCTGTTTTGCCACTGAGTAAATGGTGAACTGGAAC s rn5.chr9 29215509 31 - 121549591 AATTTCACCAGACTTGTTTCAC----------------AACTGGAGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6328119 47 + 10418462 aagttcacaagagcgagttcgctgctgtgtacaaagtggactggaga i speTri2.JH393335 C 0 C 0 s hg19.chr2 12126809 39 - 243199373 aagctca--------attttgctacggtgtaaagaatgagttggagc i hg19.chr2 C 0 I 4416 s panTro4.chr2B 12065559 39 - 247518478 aagctca--------attttgctacggtgcaaagaatgagttggagc i panTro4.chr2B C 0 I 5932 s gorGor3.chr2B 12227359 39 - 131632457 aagctca--------attttgctacagtgtaaagaatgagttggagc i gorGor3.chr2B C 0 I 4880 s nomLeu2.GL397366 2849436 39 - 6458163 aagctca--------attttgctatgatgtaaagaatgagttggagc i nomLeu2.GL397366 C 0 I 4846 s rheMac3.chr12 12820755 39 - 106825570 aagctca--------attttgctacagtgtaaagaatgagttggagc i rheMac3.chr12 C 0 I 5291 s calJac3.chr6 11731080 39 - 158406734 aagctca--------attttgctactgtataaagagtgagttggagc i calJac3.chr6 C 0 I 571 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 42134 3275 + 53618 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=662.000000 s mm10.chr1_GL456221_random 82755 26 + 206961 ATGTTGGAA----TCCTGTTCTG-----AGGTTAC s rn5.chr9 29215540 31 - 121549591 AGACTGGAA----TCCTGTCCTGATGGCAGGTTAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6328166 35 + 10418462 tgagcaagagGCTTTCAGTGCAGGTGACAGATCAC i speTri2.JH393335 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12820794 5291 - 106825570 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2849475 4846 - 6458163 I e gorGor3.chr2B 12227398 4880 - 131632457 I e panTro4.chr2B 12065598 5932 - 247518478 I e hg19.chr2 12126848 4416 - 243199373 I e calJac3.chr6 11731119 571 - 158406734 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=13455.000000 s mm10.chr1_GL456221_random 82781 100 + 206961 ACAGCCCA-AGGTGAAGGGTGCAGAGTGTCAGGTTTCCTCTTTATTTATACACACTAGGATGG---CAACCATC-------CTTC--CTAACTAAAGGGAGAGTAAATAAACT s rn5.chr9 29215571 96 - 121549591 ACAGTCCA-AGGTGAAGGGTAGAGAGTATCAGGTTTCCTC----TTTACATACTTTAGGAGGG---CAACCAAC-------CTTC--CCAACTAAAGGGAGAGTAAGTAAACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6328201 99 + 10418462 ATC-CCCC-AGTCAAAGAATGGAAGGGGGTGGGTTTTAG-----TTTATGTACATGATGATGGGGACCACCATC-------CTTTTACCGACTAAAGGGAGAATTAGAAAATT i speTri2.JH393335 C 0 I 366 s calJac3.chr6 11731690 104 - 158406734 ACAACTCATATATAAGGGATGGAGAAGGATGGACTTTCTG----TTTAGATACATGACAGGGA---CAGCCATCGTCCTCTCCTC--CTGAAAGAAAGGAAAAGAAAAAAGCT i calJac3.chr6 I 571 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12820794 5291 - 106825570 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2849475 4846 - 6458163 I e gorGor3.chr2B 12227398 4880 - 131632457 I e panTro4.chr2B 12065598 5932 - 247518478 I e hg19.chr2 12126848 4416 - 243199373 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=5574.000000 s mm10.chr1_GL456221_random 82881 40 + 206961 TTGCTACTTTGAGATAAGGTGCAGAAGAGCCTGGGTCCTA s rn5.chr9 29215667 40 - 121549591 ATGCTACTTTCAGAAAAAGGGCAAATGAACCTGGGTCCTC i rn5.chr9 C 0 C 0 s calJac3.chr6 11731794 40 - 158406734 TTGCTGTTTTGAGATAAAGTGGAAaaagatctggattcca i calJac3.chr6 C 0 I 4401 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6328300 366 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12820794 5291 - 106825570 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2849475 4846 - 6458163 I e gorGor3.chr2B 12227398 4880 - 131632457 I e panTro4.chr2B 12065598 5932 - 247518478 I e hg19.chr2 12126848 4416 - 243199373 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=2326.000000 s mm10.chr1_GL456221_random 82921 36 + 206961 GCCCTGAGAGGCAGTTCAGAGGAAAAGCCCCCAGAA s rn5.chr9 29215707 35 - 121549591 GCCCTGAGAGGTAATTCACAGGAAAAG-CCCCAGAG i rn5.chr9 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6328300 366 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12820794 5291 - 106825570 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2849475 4846 - 6458163 I e gorGor3.chr2B 12227398 4880 - 131632457 I e panTro4.chr2B 12065598 5932 - 247518478 I e hg19.chr2 12126848 4416 - 243199373 I e calJac3.chr6 11731834 4401 - 158406734 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=18475.000000 s mm10.chr1_GL456221_random 82957 436 + 206961 AAGCTTCAGAAAGGTGTTCTCATGCCAGTGGA-TGCAGCTGTCCTTGGGGAGGCAGCTTCCAAAGTC-CCGAGAGGAAAAAGTGCTGTGTCCTCCC-CTCCTCAGTGAAGGCCACTCATCCATCCACCAGTCCTGTCCACTGCAGAGCCTCTGGGCCTCTGCCACCC---------CTCGCCCA--AAAGCTGTCTTC-ACGACAGGCATAGGGCTGTCCCTGCGAT----------------GCTTT-------AGAGGTGCCCAGTGGCCTTCGGGTGTTGCCTGT-CTGAACATGGGT---------------------GCTACAT----GGAAGTCCCTTCCTCACTGCCTGAAGAATCCCAGGCCTGTGCCTCATGGTTTACG-AGTCTTAGAAACAGGAATCAGAATCTGCCCTGATCCCGAATCCCTCCATATTTATTTATTTGGTTAAATCTTTgtttgtttgtttggttt-ggttttggtttggtttggtt-------------tt s rn5.chr9 29215742 460 - 121549591 AAGCTGTTGAGAGGAGCTCTCCTGCCAGTGCAGTGTGGCTGTCCTGTGGGAGGCAGCTTCCACAGTC-CCAACAGGAAAAAGTGCCCTGTCCTCCCTCTCCTCAGCGAAGGCCACT----ACTCCACCAGTCCTGCCCACTGCAGAACCTCAGGGCCTCCGCAGCCTCTCTGGTGGCTCGCCCA--GAAGCTGCCTTCAATGGCAGGCATAGGGCTGTCCCTTCGTT----------------ACTTCACCCACAAAAGGTGCCTGGTGGCCTTTGGATGTTGCCTGT-CTGCACATGGGTA--------------------GCTACATGGAAGGAAGGCCCTTCCTCACCCCCTGAAGTATCCCAG------GCCTCGTGGTTCATG-AGTCTTAGAAACCAGTCAGAAATCACCCCCCCATCCCCAATCGTTCCA----TATTTATTTGGCTAATTTTTTGTtttgggtttgggtttgggtttgggtttggttttgtttttcaagacagggtt i rn5.chr9 C 0 C 0 s hg19.chr2 12131264 418 - 243199373 AACCTGCAGAGAAACGTTCTTGTTCAACAGGACAGCGGTCATCCTGTGGGA-TCAGCTTCTAAAGTCAACAGCCGGTGAAAAT----TGTGTTCTTTTTCCACAATGAAGCAAACTCACCTCTGCACC--CTCTGG-CATTGCACCTCCTCTGGGTCTCAGCCTCACCTTCCATCTCTCCCTCATGGTAGCCGCCTTC-TTGGCAGG----GTCCTTCCCTCTcagtttttttaataccttgcactttgcccactgaaggcacctagaaacttttggaaatctcttgtaccacacacaggccgtgggggaacctggagaggtgctttat------aagacacctcctctccaccTAGACGAGACTGTGTGGCCACCTCGTGGTGCAGGCCGACACAAACGAAAATCAGGAAATAAGC-----TCTAGGATTTCCCCA-------------------------------------------GCTTT------------------------------ i hg19.chr2 I 4416 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6328300 366 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12820794 5291 - 106825570 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2849475 4846 - 6458163 I e gorGor3.chr2B 12227398 4880 - 131632457 I e panTro4.chr2B 12065598 5932 - 247518478 I e calJac3.chr6 11731834 4401 - 158406734 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=7561.000000 s mm10.chr1_GL456221_random 83393 129 + 206961 tctttgtgtgcccttgaatgtcctggaactagctctgtaaaccaggctggcatcaagaaatcaaaactcacggatacctgcctgcctctgcctct------caagtgccaggattaaatgtgtgcaccagcactg s rn5.chr9 29216202 135 - 121549591 tctttgtgttgcccgggctgtcctggaacttgctctgtaaaccaggctgacctcaagaaatcaaagctcacagagatttgcctgtctctgcctctgcctcccactcgctgggattaaagggatgcaccagctcta i rn5.chr9 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6328300 366 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12820794 5291 - 106825570 I e equCab2.chr6 66909857 6016 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2849475 4846 - 6458163 I e gorGor3.chr2B 12227398 4880 - 131632457 I e panTro4.chr2B 12065598 5932 - 247518478 I e hg19.chr2 12131682 0 - 243199373 C e calJac3.chr6 11731834 4401 - 158406734 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=4200.000000 s mm10.chr1_GL456221_random 83522 2 + 206961 cc s rn5.chr9 29216337 2 - 121549591 cc i rn5.chr9 C 0 C 0 s panTro4.chr2B 12071530 2 - 247518478 CC i panTro4.chr2B I 5932 C 0 s gorGor3.chr2B 12232278 2 - 131632457 CC i gorGor3.chr2B I 4880 C 0 s nomLeu2.GL397366 2854321 2 - 6458163 CC i nomLeu2.GL397366 I 4846 C 0 s calJac3.chr6 11736235 2 - 158406734 CC i calJac3.chr6 I 4401 C 0 s equCab2.chr6 66915873 2 - 84719076 CC i equCab2.chr6 I 6016 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_37788 2070 5181 - 13480 I e speTri2.JH393335 6328300 366 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12820794 5291 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e hg19.chr2 12131682 0 - 243199373 C e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=3176.000000 s mm10.chr1_GL456221_random 83524 5 + 206961 cagct-- s rn5.chr9 29216339 5 - 121549591 aggct-- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 7251 5 - 13480 CATTT-- i dipOrd1.scaffold_37788 I 5181 C 0 s panTro4.chr2B 12071532 5 - 247518478 CAGCT-- i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 12232280 5 - 131632457 CAGCT-- i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 2854323 5 - 6458163 CAGCT-- i nomLeu2.GL397366 C 0 I 2 s calJac3.chr6 11736237 5 - 158406734 CAGAT-- i calJac3.chr6 C 0 I 2 s equCab2.chr6 66915875 7 - 84719076 CAGATTT i equCab2.chr6 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328300 366 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12820794 5291 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e hg19.chr2 12131682 0 - 243199373 C e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=41906.000000 s mm10.chr1_GL456221_random 83529 25 + 206961 ACCTGGTTAATTCTTATAAGAGCTC s rn5.chr9 29216344 25 - 121549591 acctggttacttcttatgagagctc i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 7256 25 - 13480 ATCTGGTTAATTTCAACCGATGGTA i dipOrd1.scaffold_37788 C 0 C 0 s hg19.chr2 12131682 25 - 243199373 ATCTAGTTGATTGCAACAGGTCATA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12071539 25 - 247518478 ATCTAGTTGATTGCAACAGGTCATA i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 12232287 25 - 131632457 ATCTAGTTGATTGCAACAGGTCATA i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 2854330 25 - 6458163 ATCTAGTTGATTGCAACAAGTCATA i nomLeu2.GL397366 I 2 C 0 s calJac3.chr6 11736244 25 - 158406734 ATCTAGTTGACTACAACAGGTCATA i calJac3.chr6 I 2 C 0 s equCab2.chr6 66915882 25 - 84719076 ATCTGGTTGCTTCCAACAGGTTGTA i equCab2.chr6 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328300 366 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12820794 5291 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=53241.000000 s mm10.chr1_GL456221_random 83554 25 + 206961 CCTGGGGTGGGAACTTATGGTGA-TG s rn5.chr9 29216369 26 - 121549591 cctggggCGGGAGAATGTGATGACTT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 7281 25 - 13480 CCTGAAGGAAGAAGAAATGATCA-TT i dipOrd1.scaffold_37788 C 0 C 0 s hg19.chr2 12131707 25 - 243199373 CCAGGAGTGAAAGCAGATGGTAA-TT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12071564 25 - 247518478 CCAGGAGTGAAAGCAGATGGTAA-TT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12232312 25 - 131632457 CCAGGAGTGAAAGCAGATGGTAA-TT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2854355 25 - 6458163 CCAGGAGTGAAAGCAGATGGTAA-TT i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11736269 25 - 158406734 CCAGGAGTGAGAGCAGATGGTAA-TC i calJac3.chr6 C 0 C 0 s tupBel1.scaffold_26703.1-1629 8 25 - 1629 CCTGGAGTGAGAATAGATGGTGA-TT i tupBel1.scaffold_26703.1-1629 N 0 C 0 s equCab2.chr6 66915907 25 - 84719076 CAGAGGGTGAGGTCAGATGGTGA-GT i equCab2.chr6 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328300 366 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12820794 5291 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e choHof1.scaffold_211216 3172 0 - 3719 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=62186.000000 s mm10.chr1_GL456221_random 83579 25 + 206961 TGGGGGGAGAAAGCATGGTGC---ACAT s rn5.chr9 29216395 25 - 121549591 TGGGGGGAGAAAGTGAGGTGC---ACAT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 7306 28 - 13480 TCTGAGGAGAAAGAAATGTGCATAACAC i dipOrd1.scaffold_37788 C 0 C 0 s hg19.chr2 12131732 25 - 243199373 TGGGGAGGCAAAGAAAGGTAC---ACAT i hg19.chr2 C 0 I 31 s panTro4.chr2B 12071589 25 - 247518478 TGGGGAGGCAAAGAAAGGTAC---ACAT i panTro4.chr2B C 0 I 31 s gorGor3.chr2B 12232337 25 - 131632457 TGGGGAGGCAAAGAAAGGTAC---ACAT i gorGor3.chr2B C 0 I 31 s nomLeu2.GL397366 2854380 25 - 6458163 TGGGGAGGCAAAGAAAGGTAC---ACAT i nomLeu2.GL397366 C 0 I 31 s calJac3.chr6 11736294 25 - 158406734 TGGGGAGACAAAGAAAGGTAC---ACAT i calJac3.chr6 C 0 I 31 s tupBel1.scaffold_26703.1-1629 33 25 - 1629 TAGGGGAAGAAAGAATGGCAC---ATAC i tupBel1.scaffold_26703.1-1629 C 0 I 1 s equCab2.chr6 66915932 25 - 84719076 TTGAAGGAAAACGAAAGGTGC---CCAC i equCab2.chr6 C 0 I 1 s choHof1.scaffold_154545 4848 21 + 5121 -TGGGGGATAA---AAGCTGC---ACAC i choHof1.scaffold_154545 n 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328300 366 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12820794 5291 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=69778.000000 s mm10.chr1_GL456221_random 83604 35 + 206961 ------AAGAG--------------------AAAACAGC-----AA--------------------------AAGT-------------GAGGTACATTCAC---CTG--- s rn5.chr9 29216420 35 - 121549591 ------AGGAG--------------------AAAACAGT-----AA--------------------------AAGT-------------GAGGTACAGCGAT---CTG--- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 7334 68 - 13480 ------AAGGGGGAGAAAAAGTAATTACAGAGAAACCAT-----AA--------------------------GAGCACAGTGAGATACAGGGGTACAGAGAT---CTG--- i dipOrd1.scaffold_37788 C 0 C 0 s hg19.chr2 12131788 35 - 243199373 ------AGGAG---------------------------------AA--------------------------AAGT-----GAGGTACAGGGGTACAGAGAT---CTG--- i hg19.chr2 I 31 C 0 s panTro4.chr2B 12071645 35 - 247518478 ------AGGAG---------------------------------AA--------------------------AAGT-----GAGGTACAGGGGTACAGAGAT---CTG--- i panTro4.chr2B I 31 C 0 s gorGor3.chr2B 12232393 35 - 131632457 ------AGGAG---------------------------------AA--------------------------AAGT-----GAGGTACAGGGGTACAGAGAT---CTG--- i gorGor3.chr2B I 31 C 0 s nomLeu2.GL397366 2854436 34 - 6458163 ------AGGAG---------------------------------AA--------------------------AAGT-----GAGGTACA-GGGTACAGAGAT---CTG--- i nomLeu2.GL397366 I 31 C 0 s rheMac3.chr12 12826085 35 - 106825570 ------AGGAG---------------------------------AA--------------------------AAGT-----GAAGTACAGGAGTACAGAGAT---CTG--- i rheMac3.chr12 I 5291 C 0 s calJac3.chr6 11736350 35 - 158406734 ------AGGAG---------------------------------AA--------------------------AAGT-----GAGGTACCGGGGTACAGAGAT---CTG--- i calJac3.chr6 I 31 C 0 s tupBel1.scaffold_26703.1-1629 59 63 - 1629 ------AGGAA---------------------------------AAAGATAATTACAGAGAAATAGTGGGGGAAGT-----GAGGTACA-GGGTACCGAGATCTCCTG--- i tupBel1.scaffold_26703.1-1629 I 1 C 0 s equCab2.chr6 66915958 65 - 84719076 ------AGAAG---AAACATGTAATCAGAGAGAAACAGCAGGAGAA--------------------------AAGC-----AGGGCACAGGGGTACAGAGAT---CTC--- i equCab2.chr6 I 1 C 0 s choHof1.scaffold_154545 4869 67 + 5121 AAGAAAAGGAA----------AAATCATAGAGAAATAGCAGGAGAA--------------------------AAGT-----GAGATACAGGGGTACAGAGAT---CTCCTG i choHof1.scaffold_154545 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328300 366 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=47237.000000 s mm10.chr1_GL456221_random 83639 39 + 206961 GAAGGGGGG---CTGGG-ATGGGGAGCCTATGAAGAAAGGA-----------------AG s rn5.chr9 29216455 38 - 121549591 GAAGGGAGG----TAGA-ATGCGAAGTCTGTGAAGAAAGGA-----------------AA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 7402 43 - 13480 GGAGGGAAGAGGCTAGACATGAGAAGTTACTAATGAAAGGA-----------------GG i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6328666 38 + 10418462 GGAGAAGGG----CAGG-AAGGCAGGTCACTAGGGAGGGGA-----------------AG i speTri2.JH393335 I 366 C 0 s hg19.chr2 12131823 33 - 243199373 AAAGAGTGG------GA-GTTAGGGGCAT---GAGAAGGGA-----------------AG i hg19.chr2 C 0 I 19 s panTro4.chr2B 12071680 33 - 247518478 AAAGGGTGG------GA-GTTAGGGGCAT---GAGAAGGGA-----------------AG i panTro4.chr2B C 0 I 19 s gorGor3.chr2B 12232428 33 - 131632457 AAAGGGTGG------GA-GTTAGGGGCAT---GAGAAGGGA-----------------AG i gorGor3.chr2B C 0 I 19 s nomLeu2.GL397366 2854470 33 - 6458163 AAAGGGTGG------GA-GTTAGGGCCAT---GAGAAGGGA-----------------AG i nomLeu2.GL397366 C 0 I 19 s rheMac3.chr12 12826120 33 - 106825570 AAAGGGTTG------GA-GTTGGGAGCAT---GAGAAAGGA-----------------AG i rheMac3.chr12 C 0 I 6 s calJac3.chr6 11736385 33 - 158406734 AAAGGGTGG------GA-GTTAGAGGGAG---GAGAAGGGA-----------------AG i calJac3.chr6 C 0 I 19 s tupBel1.scaffold_26703.1-1629 122 50 - 1629 AAAAGGTGG------GG-GCTAGAGGCAT---GAAGGGAGATCACTGATGGCCACCGGAG i tupBel1.scaffold_26703.1-1629 C 0 C 0 s equCab2.chr6 66916023 33 - 84719076 AAAGTGTGG------AG-ACCGGGACCAG---GAGAAGGGA-----------------GG i equCab2.chr6 C 0 I 21 s choHof1.scaffold_154545 4936 30 + 5121 AAAGGGTGG------GG-GCTGGGGACAC---GGGGGTAG-------------------- i choHof1.scaffold_154545 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=-5608.000000 s mm10.chr1_GL456221_random 83678 2 + 206961 -GA s rn5.chr9 29216493 2 - 121549591 -GA i rn5.chr9 C 0 I 64 s dipOrd1.scaffold_37788 7445 2 - 13480 -GA i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6328704 2 + 10418462 -GG i speTri2.JH393335 C 0 I 3 s hg19.chr2 12131875 2 - 243199373 -GA i hg19.chr2 I 19 I 1 s panTro4.chr2B 12071732 2 - 247518478 -GA i panTro4.chr2B I 19 I 1 s gorGor3.chr2B 12232480 2 - 131632457 -GA i gorGor3.chr2B I 19 I 1 s nomLeu2.GL397366 2854522 2 - 6458163 -GA i nomLeu2.GL397366 I 19 I 1 s calJac3.chr6 11736437 2 - 158406734 -GA i calJac3.chr6 I 19 I 1 s tupBel1.scaffold_26703.1-1629 172 1 - 1629 --G i tupBel1.scaffold_26703.1-1629 C 0 I 1 s equCab2.chr6 66916077 1 - 84719076 -G- i equCab2.chr6 I 21 C 0 s choHof1.scaffold_154545 4966 2 + 5121 AG- i choHof1.scaffold_154545 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12826153 6 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 44869 5473 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I a score=-12952.000000 s mm10.chr1_GL456221_random 83680 3 + 206961 GTG- s dipOrd1.scaffold_37788 7447 3 - 13480 GAG- i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6328709 3 + 10418462 GCT- i speTri2.JH393335 I 3 C 0 s hg19.chr2 12131878 2 - 243199373 GC-- i hg19.chr2 I 1 I 1 s panTro4.chr2B 12071735 2 - 247518478 GC-- i panTro4.chr2B I 1 I 1 s gorGor3.chr2B 12232483 2 - 131632457 GC-- i gorGor3.chr2B I 1 I 1 s nomLeu2.GL397366 2854525 2 - 6458163 GC-- i nomLeu2.GL397366 I 1 I 1 s rheMac3.chr12 12826159 2 - 106825570 AT-- i rheMac3.chr12 I 6 I 17 s papHam1.scaffold15394 50342 2 + 58077 AT-- i papHam1.scaffold15394 I 5473 I 60 s calJac3.chr6 11736440 2 - 158406734 GT-- i calJac3.chr6 I 1 C 0 s tupBel1.scaffold_26703.1-1629 174 2 - 1629 GC-- i tupBel1.scaffold_26703.1-1629 I 1 I 1 s equCab2.chr6 66916078 2 - 84719076 GT-- i equCab2.chr6 C 0 I 1 s choHof1.scaffold_154545 4968 3 + 5121 GT-T i choHof1.scaffold_154545 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9069938 2003 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I e rn5.chr9 29216495 64 - 121549591 I a score=9817.000000 s mm10.chr1_GL456221_random 83683 6 + 206961 TT---CCAG s dipOrd1.scaffold_37788 7450 9 - 13480 ATTTACTGG i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6328712 6 + 10418462 CT---CTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12131881 6 - 243199373 ---CACTGA i hg19.chr2 I 1 C 0 s panTro4.chr2B 12071738 6 - 247518478 ---CACTGA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12232486 6 - 131632457 ---CACTGA i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2854528 6 - 6458163 ---CACTGA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12826178 6 - 106825570 ---CACTGA i rheMac3.chr12 I 17 C 0 s calJac3.chr6 11736442 6 - 158406734 ---TACTGA i calJac3.chr6 C 0 C 0 s tupBel1.scaffold_26703.1-1629 177 6 - 1629 ---CACTGG i tupBel1.scaffold_26703.1-1629 I 1 C 0 s equCab2.chr6 66916081 6 - 84719076 ---CACTGG i equCab2.chr6 I 1 C 0 s choHof1.scaffold_154545 4971 6 + 5121 ---CACCAA i choHof1.scaffold_154545 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 50344 60 + 58077 I e felCat5.chrC1 9069938 2003 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I e rn5.chr9 29216495 64 - 121549591 I a score=4875.000000 s mm10.chr1_GL456221_random 83689 2 + 206961 GA s dipOrd1.scaffold_37788 7459 2 - 13480 GA i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6328718 2 + 10418462 GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12131887 2 - 243199373 AG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12071744 2 - 247518478 AG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12232492 2 - 131632457 AG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2854534 2 - 6458163 AG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826184 2 - 106825570 AG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11736448 2 - 158406734 AG i calJac3.chr6 C 0 C 0 s tupBel1.scaffold_26703.1-1629 183 2 - 1629 GG i tupBel1.scaffold_26703.1-1629 C 0 C 0 s felCat5.chrC1 9071941 2 - 221441202 TG i felCat5.chrC1 I 2003 I 3965 s equCab2.chr6 66916087 1 - 84719076 -G i equCab2.chr6 C 0 I 1 s choHof1.scaffold_154545 4977 2 + 5121 AG i choHof1.scaffold_154545 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 50344 60 + 58077 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I e rn5.chr9 29216495 64 - 121549591 I a score=67578.000000 s mm10.chr1_GL456221_random 83691 25 + 206961 ACCTCCATTTCAACCACACATGAGT---- s dipOrd1.scaffold_37788 7461 25 - 13480 ACCCCAATTTGAAGGATTCATAAAT---- i dipOrd1.scaffold_37788 C 0 I 8 s speTri2.JH393335 6328720 15 + 10418462 ACCCCAAT----------CACAAAT---- i speTri2.JH393335 C 0 I 8 s hg19.chr2 12131889 25 - 243199373 ACCCCAATTTAAACTATTAACAAGT---- i hg19.chr2 C 0 I 1 s panTro4.chr2B 12071746 25 - 247518478 ACCCCAATTTAAACTATTAACAAGT---- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 12232494 25 - 131632457 ACCCCAATTTAAACTATTAACAAGT---- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 2854536 25 - 6458163 ACCCCAGTTTAAATTATTAACAAGT---- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 12826186 25 - 106825570 ACCCCAATTTAAACTACTAACAAGT---- i rheMac3.chr12 C 0 I 1 s calJac3.chr6 11736450 25 - 158406734 ACCCCAATTTAAACTATTCACAAGT---- i calJac3.chr6 C 0 I 1 s tupBel1.scaffold_26703.1-1629 185 24 - 1629 ACCCTGATTC-AACTATTCACAACC---- i tupBel1.scaffold_26703.1-1629 C 0 I 8 s equCab2.chr6 66916089 25 - 84719076 ACCCCAGTCAAAGCTATTTATGAAT---- i equCab2.chr6 I 1 I 8 s choHof1.scaffold_154545 4979 29 + 5121 ACCCCAGTTGAAACCATTCGCTGATCACT i choHof1.scaffold_154545 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 50344 60 + 58077 I e felCat5.chrC1 9071943 3965 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 113936 5781 - 176633 I e rn5.chr9 29216495 64 - 121549591 I a score=2100.000000 s mm10.chr1_GL456221_random 83716 1 + 206961 G s dipOrd1.scaffold_37788 7494 1 - 13480 G i dipOrd1.scaffold_37788 I 8 C 0 s speTri2.JH393335 6328743 1 + 10418462 G i speTri2.JH393335 I 8 C 0 s micMur1.scaffold_3075 119717 1 - 176633 G i micMur1.scaffold_3075 I 5781 I 602 s tupBel1.scaffold_26703.1-1629 217 1 - 1629 G i tupBel1.scaffold_26703.1-1629 I 8 C 0 s equCab2.chr6 66916122 1 - 84719076 G i equCab2.chr6 I 8 C 0 s choHof1.scaffold_154545 5008 1 + 5121 G i choHof1.scaffold_154545 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12826211 1 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2854561 1 - 6458163 I e gorGor3.chr2B 12232519 1 - 131632457 I e panTro4.chr2B 12071771 1 - 247518478 I e hg19.chr2 12131914 1 - 243199373 I e calJac3.chr6 11736475 1 - 158406734 I e papHam1.scaffold15394 50344 60 + 58077 I e felCat5.chrC1 9071943 3965 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e rn5.chr9 29216495 64 - 121549591 I a score=-3625.000000 s mm10.chr1_GL456221_random 83717 1 + 206961 -G s dipOrd1.scaffold_37788 7495 1 - 13480 -G i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6328744 1 + 10418462 -G i speTri2.JH393335 C 0 C 0 s hg19.chr2 12131915 1 - 243199373 -A i hg19.chr2 I 1 I 8 s panTro4.chr2B 12071772 1 - 247518478 -A i panTro4.chr2B I 1 I 8 s gorGor3.chr2B 12232520 1 - 131632457 -A i gorGor3.chr2B I 1 I 8 s nomLeu2.GL397366 2854562 1 - 6458163 -A i nomLeu2.GL397366 I 1 I 8 s rheMac3.chr12 12826212 1 - 106825570 -A i rheMac3.chr12 I 1 I 8 s calJac3.chr6 11736476 1 - 158406734 -A i calJac3.chr6 I 1 C 0 s tupBel1.scaffold_26703.1-1629 218 1 - 1629 -G i tupBel1.scaffold_26703.1-1629 C 0 C 0 s equCab2.chr6 66916123 1 - 84719076 -G i equCab2.chr6 C 0 C 0 s choHof1.scaffold_154545 5009 1 + 5121 T- i choHof1.scaffold_154545 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 50344 60 + 58077 I e felCat5.chrC1 9071943 3965 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I e rn5.chr9 29216495 64 - 121549591 I a score=10734.000000 s mm10.chr1_GL456221_random 83718 2 + 206961 TC s dipOrd1.scaffold_37788 7496 2 - 13480 TC i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6328745 2 + 10418462 TC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12131924 2 - 243199373 TC i hg19.chr2 I 8 C 0 s panTro4.chr2B 12071781 2 - 247518478 TC i panTro4.chr2B I 8 C 0 s gorGor3.chr2B 12232529 2 - 131632457 TC i gorGor3.chr2B I 8 C 0 s nomLeu2.GL397366 2854571 2 - 6458163 TC i nomLeu2.GL397366 I 8 C 0 s rheMac3.chr12 12826221 2 - 106825570 TC i rheMac3.chr12 I 8 C 0 s papHam1.scaffold15394 50404 2 + 58077 TC i papHam1.scaffold15394 I 60 I 321 s calJac3.chr6 11736477 2 - 158406734 TC i calJac3.chr6 C 0 I 2 s tupBel1.scaffold_26703.1-1629 219 2 - 1629 TC i tupBel1.scaffold_26703.1-1629 C 0 C 0 s equCab2.chr6 66916124 2 - 84719076 CC i equCab2.chr6 C 0 C 0 s choHof1.scaffold_154545 5010 2 + 5121 TG i choHof1.scaffold_154545 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I e rn5.chr9 29216495 64 - 121549591 I a score=-2883.000000 s mm10.chr1_GL456221_random 83720 4 + 206961 TCAG--- s dipOrd1.scaffold_37788 7498 1 - 13480 T------ i dipOrd1.scaffold_37788 C 0 C 0 s calJac3.chr6 11736481 3 - 158406734 -TTG--- i calJac3.chr6 I 2 I 3 s choHof1.scaffold_154545 5012 4 + 5121 ---GGCA i choHof1.scaffold_154545 C 0 C 0 e ochPri2.scaffold_18102 3643 3509 - 49318 I e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328747 0 + 10418462 C e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12826223 0 - 106825570 C e equCab2.chr6 66916126 0 - 84719076 C e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2854573 0 - 6458163 C e gorGor3.chr2B 12232531 0 - 131632457 C e panTro4.chr2B 12071783 0 - 247518478 C e hg19.chr2 12131926 0 - 243199373 C e papHam1.scaffold15394 50406 321 + 58077 I e felCat5.chrC1 9071943 3965 - 221441202 I e tupBel1.scaffold_26703.1-1629 221 0 - 1629 C e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I e rn5.chr9 29216495 64 - 121549591 I a score=464590.000000 s mm10.chr1_GL456221_random 83724 103 + 206961 CAGGAGTGGCCTCACCTGGACATGGAGTTCAAGAGAAGCTCAAGGAGGTGAGCAGGAGGACTTTGTGGAAAGATGACTCATCTACGAACGTGAAGGAGGTGAC s rn5.chr9 29216559 103 - 121549591 CAGGAGTGGCCTCACCTGGACCTGGAGTTCAGGAGAAGCTCAAGGTGGTGGGGCAGAGGACTCTGAATCAGGATGACTCAACTAGGAACGTGAAGGTAGTGAC i rn5.chr9 I 64 C 0 s dipOrd1.scaffold_37788 7499 102 - 13480 -AGAAGCAGTGTCACCTGAGCAAGGAACCCAAGAGGAGCTCCAAGGGGCAAACCAGGGCACCCAAATGAGAGATGACTTAACCCAGGACTTGGATGTGCTGGA i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6328747 103 + 10418462 CAGAGGCTGCCTCACCTGGGCACAGAGATGAAAAGAAGCTCCCAAAGCTGGATCAGGAGACTCGGAGGAAGGATCACTCAACCTGCAGCCCCAGGGTGGTGAC i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_18102 7152 94 - 49318 CAGGGGTTGTCTCATCTGGGCATGAAATGCAAAAGAAGCT---------GGAGCAGGTGACTAGAAGGAAAGATGATCCAATCCGAAACTCAAGGGTGATGAC i ochPri2.scaffold_18102 I 3509 C 0 s hg19.chr2 12131926 103 - 243199373 CAGGGACAGCCTCATCTAGACACGGAATCCAAAAGAAGCTCAAAAGGGTGGATCAGGTTCCTCAAAAGAAAGATGACTCAACTTGTAACTCCACGGTAGAGAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12071783 103 - 247518478 CAGGGACAGCCTCATCTAGACACGGAATCCAAAAGAAGCTCAAAAGGGTGGATCAGGTTCCTCAAAAGAAAGATGACTCAACTTGTAACTCCACGGTAGAGAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12232531 103 - 131632457 CAGGGACAGCCTCATCTAGACACGGAATCCAAAAGAAGCTCAAAAGTGTGGATCAGGTTCCTCAAAAGAAAGATGACTCAACTTGTAACTCCACGGTAGAGAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2854573 103 - 6458163 CAGGGACAGCCTCACCTAGACATGGAATCCAAAAGAAGCTCAAAAGGGTGGATCAGGTTCCTCAAAAGAAAGATGACTCAACTTGGAACTCCATGGTAGTGAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826223 103 - 106825570 CAGATGCAGCCTCACCTAGACATGGAATCCAAAAGAAGCTCAAAGTAGTGGATCAGGTTCCTCAAAAGAAAGATGACTCAACTTGGAACACCACGGTAGTGAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11736487 103 - 158406734 CAGGGACAGCCTCACCTAGACATGGAATCAAAAAGAAGCTCAAAGTGGTGGATCGGGTTCCTCAAAAGAAAGATGACTCAACTTGGAAGTCCACAGTAATGAC i calJac3.chr6 I 3 C 0 s tupBel1.scaffold_26703.1-1629 221 103 - 1629 CAGGGGCAGCCTCACCTGAGCAAGGAACTCAAGAGAGACTCCAAGTGATGCATCAGGTGACTAGAAAAAAGAACAGCTCGACCTGGAAGTCAGAGGTGATGAC i tupBel1.scaffold_26703.1-1629 C 0 C 0 s equCab2.chr6 66916126 103 - 84719076 CAGGGACAGTCTCACCTGGGGATGAAATCCAAGAGAAGCTCCAAGTGGTGGATCAGGCAACTCAAAAGAAGGACGACTCAACCAGGAACTCAAAGGTCACGAC i equCab2.chr6 C 0 C 0 s choHof1.scaffold_154545 5016 103 + 5121 CAGGAGCAGCCTCACCTGCACCTGGAATCCAAAAGAAGCTCCAAGAATTGGATCAGGTGACTCAAATGAGGGTCAACTCAACCTGTAACTTGAAGGTCATGAC i choHof1.scaffold_154545 C 0 n 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 50406 321 + 58077 I e felCat5.chrC1 9071943 3965 - 221441202 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=263186.000000 s mm10.chr1_GL456221_random 83827 66 + 206961 CAAGACACTGAGAGCAAGGATGAGGTGTGCCCAGACATCCAATTCACAAGGTAAGGCTGAGGGTGG s rn5.chr9 29216662 66 - 121549591 CAGGACTCTGAGGGAAAGGACTCGCTGTGCCCAGACATCCAGTTCTCAAGGTAAGGCAGAGGGTGG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 7601 65 - 13480 AAGGGTCCACGAGGCAAAGACTGAATGTGCCCCGACACCCACCCCAGAAGGTAAGGCT-ACAGTAG i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6328850 66 + 10418462 AAGGGCCCAGAAGGCTAGGATCACACGTGCCCGGGCATCCAGACAGGACCGTAAGTCTGGGGAAGG i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_18102 7246 65 - 49318 AAAGAACAAGAAGGCAAAAATGAACTGTACCCAAGTGTCCAGACTGGAGGGTAAG-CTGTGGATGG i ochPri2.scaffold_18102 C 0 N 0 s hg19.chr2 12132029 66 - 243199373 AAGGGCCCAAAAGGCGAGAACTGAATGTGCCCGAAAGTCGAGATCAGAGGGTAAGGCTGATGATGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12071886 66 - 247518478 AAGGGCCCAAAAGGCGAGAACTGAATGTGCCCGAAAGTCCAGATCAGAGGGTAAGGCTGATGATGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12232634 66 - 131632457 AAGGGCCCAAAAGGCGAGAACTGAATGTGCCCGAAAGTCCAGATCAGAGGGTAAGGCTGATGATGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2854676 66 - 6458163 AAGGGCCCAAAAGGCGAGAACTGAATGCGCCCGAACGTCCAGATCAGAGGGTAAGGCTGATGATGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826326 66 - 106825570 AAGGGTCCAAAAGGCAAGAGCTGAATGTGCCCGAAACTCCAGATCAGAGGGTAAGACTGATGATGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11736590 66 - 158406734 AAGGGCCCAGAAGGCGAGAACTCAGCATGCCCCAAAGTCTAGATCAGAAGGTAAGGCTGATGATGG i calJac3.chr6 C 0 C 0 s tupBel1.scaffold_26703.1-1629 324 66 - 1629 GAGAGCCCAAAAGGCAAGGGCCAGATGTGCCCAAACGTCCAGATCAGAGGGTAAGGCTGATGGTGG i tupBel1.scaffold_26703.1-1629 C 0 C 0 s equCab2.chr6 66916229 66 - 84719076 AAGGGTCCAAAAAGCCAGGACTGGATGTGCCCAAACATCTGGACCAGAGGGTGAGGCTGGTGATGG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 50406 321 + 58077 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=157251.000000 s mm10.chr1_GL456221_random 83893 63 + 206961 CAC--CTGCCATTGGAAAGGCTCAGCCTGGGCAAATCTCTC--AGAGCTGGTGCAGGGGTCGGGGGA s rn5.chr9 29216728 62 - 121549591 CAC--CTGCCATTGGAAAGGCTCAGCACAGGAGGGTCTCTT--GGAGCTGGCATGGGGGGGGGGGG- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 7666 59 - 13480 AAT--CTGCCATTCAGATGGCTCTGTAGTGAAAGGTCTTTT------CTGAAACAGGAGGTGTTAGA i dipOrd1.scaffold_37788 C 0 C 0 s speTri2.JH393335 6328916 57 + 10418462 AATGGCTGTCCTGGAGCAGGTGCAGGGAGGGAAGG----------AGGGGGAGGGCAGGTCAGGGGA i speTri2.JH393335 C 0 I 2434 s hg19.chr2 12132095 65 - 243199373 AAT--CTGCCATTTGAATGGCTCAGTGTGGGAGGGTCTCTCCTGAAGCAGGTACAGAGTTAAGTAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12071952 65 - 247518478 AAT--CTGCCATTTGAATGGCTCAGTGTGGGAGGGTCTCTCCGGAAGCAGGTACAGAGTTAAGCAGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12232700 65 - 131632457 AAT--CTGCCATTTGAATGGCTCAGTGTGGGAGGGTCTCTCCTGAAGCAGGTACAGAGTTAAGTAGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2854742 65 - 6458163 AAT--CTGCCATTTGAATGGCTCAATGTGGGAGGGTTTCTCCTGAAGCAGGTACAGGGTTAAGTAGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826392 65 - 106825570 AAT--CTGCCATTTGAATGGCTTGGTGTGGAAGGGTCTGTCCTGAAGCAGGTACAGGGTTAAGTAGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11736656 64 - 158406734 AAT--CTGCCATTTGAATGGCTCAATGTGGGAGGGTCTCTCCTGGAGCA-GTACAGGGTTAAGTAGA i calJac3.chr6 C 0 C 0 s tupBel1.scaffold_26703.1-1629 390 64 - 1629 CAC--TTGCCATTCGAATGGCTCCATGTGGGAGGGTTTCTCC-GGAGCGGGTGCAGAGTCGGCAAGA i tupBel1.scaffold_26703.1-1629 C 0 C 0 s equCab2.chr6 66916295 64 - 84719076 AGT--CTTCTATTTGAAT-TCTCACTGTGGGAGGGTCTGTCATGGAGCAGGCACTGGGTTAGGTGGA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 50406 321 + 58077 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=9713.000000 s mm10.chr1_GL456221_random 83956 4 + 206961 TACA s rn5.chr9 29216790 2 - 121549591 --CA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 7725 4 - 13480 TATA i dipOrd1.scaffold_37788 C 0 N 0 s hg19.chr2 12132160 4 - 243199373 TATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12072017 4 - 247518478 TATG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12232765 4 - 131632457 TATG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2854807 4 - 6458163 TATG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826457 4 - 106825570 TATG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11736720 4 - 158406734 TATG i calJac3.chr6 C 0 C 0 s tupBel1.scaffold_26703.1-1629 454 4 - 1629 TATG i tupBel1.scaffold_26703.1-1629 C 0 C 0 s equCab2.chr6 66916359 4 - 84719076 CTTG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 50406 321 + 58077 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=121291.000000 s mm10.chr1_GL456221_random 83960 65 + 206961 TGACCTCCGTGTTAGCAGAG---AGATTTTCAGAGA---------GAAC----AGGCGAGGGGCAAAGAGAGGCAACGAA-----T s rn5.chr9 29216792 79 - 121549591 TGACCTCAGTGTTAGCAAAG---AGACATTAAGAGAATGAGGGTCGGGG----AGAAGAGGGGCAAAGAGAAGCAATATCCACTTC i rn5.chr9 C 0 C 0 s hg19.chr2 12132164 77 - 243199373 TAAAGTCAATAGTAAAAGGA---AAAAGTACAGAGAATGAGGAT-GGGGTATAACAAGAGGAACAAAGAGAGCAAGCATC-----T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12072021 78 - 247518478 TAAAGTCAATAGTAAAAGGA---AAAAGTACAGAGAATGAGGATGGGGGTATAACAAGAGGGACAAAGAGAGCAAGCATC-----T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12232769 77 - 131632457 TAAAGTCAATAGTAAAAGGA---AAAAGTACAGAGAATGAGGAT-GGGGTATAACAAGAGGGACAAAGAGAGCAAGCATC-----T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2854811 77 - 6458163 TAAAGTCAATAGTAAAAGGA---AAAAGTACAGAGAATGAGGAT-GGGGTATAACAAGAGGGACAAAGAGAGCAAGCATC-----T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826461 68 - 106825570 TAAAGTCAATAGAAAGAGGA---AAAAGTACAGAGAATGAGGAT-AGGATATGACAAGAGAGACAAAGAAAG-------------- i rheMac3.chr12 C 0 I 15 s calJac3.chr6 11736724 77 - 158406734 TAAAGTCAATAGTAAAAGGA---AAAAGTACAGAGAATGAGGAT-GGAATATGACAAAAGGGACAAAGAGAGCAAGCATC-----T i calJac3.chr6 C 0 C 0 s tupBel1.scaffold_26703.1-1629 458 72 - 1629 T----CCagcaggagaaggg---ggaggtg-agagaaagaggag-gaggtgagacaggagggacaaagagaaggCTCTAT-----T i tupBel1.scaffold_26703.1-1629 C 0 C 0 s equCab2.chr6 66916363 78 - 84719076 TAAAGTTAATACTAGGAGGAGGGAGAAGTGCAGAGAAAAACAGT-GAGGTTTAACAAGAGGGACAGAGGGAAAAAGGAT------- i equCab2.chr6 C 0 I 7 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4916690 7190 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 50406 321 + 58077 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=1302.000000 s mm10.chr1_GL456221_random 84025 1 + 206961 G s rn5.chr9 29216871 1 - 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 12132241 1 - 243199373 G i hg19.chr2 C 0 I 4 s panTro4.chr2B 12072099 1 - 247518478 G i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 12232846 1 - 131632457 G i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 2854888 1 - 6458163 G i nomLeu2.GL397366 C 0 I 4 s calJac3.chr6 11736801 1 - 158406734 A i calJac3.chr6 C 0 I 5 s tupBel1.scaffold_26703.1-1629 530 1 - 1629 G i tupBel1.scaffold_26703.1-1629 C 0 I 2 s equCab2.chr6 66916448 1 - 84719076 A i equCab2.chr6 I 7 C 0 s myoLuc2.GL429770 4923880 1 - 30916457 A i myoLuc2.GL429770 I 7190 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12826529 15 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e papHam1.scaffold15394 50406 321 + 58077 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=-7593.000000 s mm10.chr1_GL456221_random 84026 2 + 206961 GC- s rn5.chr9 29216872 2 - 121549591 GA- i rn5.chr9 C 0 C 0 s hg19.chr2 12132246 2 - 243199373 AT- i hg19.chr2 I 4 I 1 s panTro4.chr2B 12072104 2 - 247518478 AT- i panTro4.chr2B I 4 I 1 s gorGor3.chr2B 12232851 2 - 131632457 AT- i gorGor3.chr2B I 4 I 1 s nomLeu2.GL397366 2854893 2 - 6458163 AT- i nomLeu2.GL397366 I 4 I 1 s rheMac3.chr12 12826544 1 - 106825570 -T- i rheMac3.chr12 I 15 I 1 s papHam1.scaffold15394 50727 1 + 58077 -T- i papHam1.scaffold15394 I 321 N 0 s calJac3.chr6 11736807 1 - 158406734 -T- i calJac3.chr6 I 5 I 1 s tupBel1.scaffold_26703.1-1629 533 2 - 1629 GC- i tupBel1.scaffold_26703.1-1629 I 2 C 0 s equCab2.chr6 66916449 2 - 84719076 -TC i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4923881 2 - 30916457 -TC i myoLuc2.GL429770 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=4979.000000 s mm10.chr1_GL456221_random 84028 2 + 206961 CA s rn5.chr9 29216874 2 - 121549591 GG i rn5.chr9 C 0 C 0 s hg19.chr2 12132249 2 - 243199373 TG i hg19.chr2 I 1 C 0 s panTro4.chr2B 12072107 2 - 247518478 TG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12232854 2 - 131632457 TG i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2854896 2 - 6458163 TG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12826546 2 - 106825570 TG i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11736809 2 - 158406734 TG i calJac3.chr6 I 1 C 0 s tupBel1.scaffold_26703.1-1629 535 2 - 1629 TA i tupBel1.scaffold_26703.1-1629 C 0 C 0 s equCab2.chr6 66916451 2 - 84719076 TG i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4923883 2 - 30916457 TG i myoLuc2.GL429770 C 0 I 94 e pteVam1.scaffold_15734 3702 11116 - 27100 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=62457.000000 s mm10.chr1_GL456221_random 84030 29 + 206961 AGGAGTTTTTGATAAAGAAACAG------CCACAG------- s rn5.chr9 29216876 29 - 121549591 AGGAGTTTTCGGTAAAGAAACAG------CCACAG------- i rn5.chr9 C 0 C 0 s hg19.chr2 12132251 34 - 243199373 AAAAG-TTTTGTGGAAGAAACAGACGTGTTCACAG------- i hg19.chr2 C 0 I 3 s panTro4.chr2B 12072109 34 - 247518478 AAAAG-TTTTGTGGAAGAAACAGACATGTTCACAG------- i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 12232856 34 - 131632457 AAAAG-TTTTGTGGAAGAAACAGACATGTTCACAG------- i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 2854898 34 - 6458163 AAAAG-TTTTGTGGAAGAAACAGACATGTTCACAG------- i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 12826548 35 - 106825570 AAAAGTTTTTGTGGAAGAAACAGACATGTTCACAG------- i rheMac3.chr12 C 0 I 3 s calJac3.chr6 11736811 28 - 158406734 AAAAGTTTTTGTGGAAGAAACAGACATG-------------- i calJac3.chr6 C 0 I 3 s tupBel1.scaffold_26703.1-1629 537 35 - 1629 AGGAGTTTTGGTTGAAGAAACAAATGTGTCCACAG------- i tupBel1.scaffold_26703.1-1629 C 0 I 14 s equCab2.chr6 66916453 41 - 84719076 AGGTGTTTTTGT-GCAGAAGCAGCTGTGTTCTCAGGGTCCAG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923885 94 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=-2167.000000 s mm10.chr1_GL456221_random 84059 3 + 206961 -GT-C s rn5.chr9 29216905 3 - 121549591 -GT-C i rn5.chr9 C 0 C 0 s equCab2.chr6 66916494 3 - 84719076 C-TG- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923885 94 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12826583 3 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2854932 3 - 6458163 I e gorGor3.chr2B 12232890 3 - 131632457 I e panTro4.chr2B 12072143 3 - 247518478 I e hg19.chr2 12132285 3 - 243199373 I e calJac3.chr6 11736839 3 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e tupBel1.scaffold_26703.1-1629 572 14 - 1629 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=62890.000000 s mm10.chr1_GL456221_random 84062 31 + 206961 ATCT---CAGTTGAGACCTAAGGCAGAGGGTGTC s rn5.chr9 29216908 31 - 121549591 ACCC---CAGCTGAGACCTAAGGCAGAGCATGTC i rn5.chr9 C 0 C 0 s hg19.chr2 12132288 27 - 243199373 -------CAGCTGTGGCCTGGGGcagcagctctc i hg19.chr2 I 3 C 0 s panTro4.chr2B 12072146 27 - 247518478 -------CAGCTGTGGCCTGGGGcagcagctctc i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 12232893 27 - 131632457 -------CGGCTGTGGCCTGGGGcagcagctctc i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 2854935 27 - 6458163 -------CAGCTGTGGCCTGGGGcagcagctctc i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 12826586 27 - 106825570 -------CAGCTGTGGCCTGGGGcagcagctgtc i rheMac3.chr12 I 3 C 0 s calJac3.chr6 11736842 34 - 158406734 ACGGGGACAGCTATGGCCTGGGGcagcagctctc i calJac3.chr6 I 3 C 0 s tupBel1.scaffold_26703.1-1629 586 25 - 1629 ---------TTCTTGGGTTAAGGCAGCAGCTCTC i tupBel1.scaffold_26703.1-1629 I 14 C 0 s equCab2.chr6 66916497 30 - 84719076 ACCT---CAGCTGTGACCT-GGGcagcagctctt i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923885 94 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=5494.000000 s mm10.chr1_GL456221_random 84093 5 + 206961 AACGC s rn5.chr9 29216939 5 - 121549591 AACCC i rn5.chr9 C 0 C 0 s hg19.chr2 12132315 5 - 243199373 aaatt i hg19.chr2 C 0 C 0 s panTro4.chr2B 12072173 5 - 247518478 aaatt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12232920 5 - 131632457 aaatt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2854962 5 - 6458163 aaatt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826613 5 - 106825570 aaatt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11736876 5 - 158406734 aaatt i calJac3.chr6 C 0 C 0 s tupBel1.scaffold_26703.1-1629 611 2 - 1629 AA--- i tupBel1.scaffold_26703.1-1629 C 0 C 0 s equCab2.chr6 66916527 5 - 84719076 aaatt i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 4923979 5 - 30916457 aagga i myoLuc2.GL429770 I 94 I 795 e pteVam1.scaffold_15734 3702 11116 - 27100 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=127433.000000 s mm10.chr1_GL456221_random 84098 77 + 206961 TTTAGAT-----------ttaacaatcttaaagattactaagaa-----cttcccaaggt--ctacatctgtgttgtttatgtctacctgtttct s rn5.chr9 29216944 77 - 121549591 TTTAGAT-----------TTTGCAACCTTAAAGATTACTAAGAA-----CTTCCCAAGGT--CCACGTCTGTGTTGTTTATGTCTACATATTTCT i rn5.chr9 C 0 C 0 s hg19.chr2 12132320 88 - 243199373 ttttggtctcaggactcctttatgctctcaaaaattattgagga-----ccctaaggagc--ttctgtttatgttgtttatgtctatctacatgt i hg19.chr2 C 0 C 0 s panTro4.chr2B 12072178 88 - 247518478 ttttggtctcaggactcctttatgctctcaaaaattattgagga-----ccctaaggagc--ttctgtttatgttgtttatgtctatctacatgt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12232925 88 - 131632457 ttttggtctcaggactcctttatgctctcaaaaattattgagga-----ccttaaggagc--ttctgtttatgttgtttatgtctatctacatgt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2854967 88 - 6458163 ttttggtctcaggactcctttatgctctcaaaaattattgagga-----ccctaaagagc--ttctgtttatgttgtttatgtctatctacatgt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826618 88 - 106825570 ttttggtctcaggactcctttatgctctcaaaaattattgagga-----ccctaaagagc--ttctgttcatgttgtttatatctatctacgtgt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11736881 85 - 158406734 cttcagtctcaggactcctttatgctcttaaaaattattgagga-----ccctaaagagcatttttggttgttttttttttttttttttt----- i calJac3.chr6 C 0 I 1423 s tupBel1.scaffold_26703.1-1629 613 67 - 1629 ---------------------ACACTCTTAAGAATTActgagtcatattccatagtgtgt--atctg-ccatattttttcaatccattcat---- i tupBel1.scaffold_26703.1-1629 C 0 C 0 s equCab2.chr6 66916532 60 - 84719076 -ttcggtctcaggactccttcacactcttaaaaatta----------------------------------tgttgtttatatgtggccatatat i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=11045.000000 s mm10.chr1_GL456221_random 84175 8 + 206961 ccattatt s rn5.chr9 29217021 8 - 121549591 CCTTTATT i rn5.chr9 C 0 C 0 s hg19.chr2 12132408 8 - 243199373 acctgatt i hg19.chr2 C 0 C 0 s panTro4.chr2B 12072266 8 - 247518478 acttgatt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12233013 8 - 131632457 acctgatt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2855055 8 - 6458163 acctgatt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826706 8 - 106825570 accttatt i rheMac3.chr12 C 0 C 0 s tupBel1.scaffold_26703.1-1629 680 6 - 1629 --ctgttc i tupBel1.scaffold_26703.1-1629 C 0 N 0 s equCab2.chr6 66916592 8 - 84719076 accttctt i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=21016.000000 s mm10.chr1_GL456221_random 84183 14 + 206961 catagtttaaaaaa s rn5.chr9 29217029 14 - 121549591 CACAATTAAAAACA i rn5.chr9 C 0 C 0 s hg19.chr2 12132416 13 - 243199373 -agaaattaaaact i hg19.chr2 C 0 C 0 s panTro4.chr2B 12072274 13 - 247518478 -agaaattaaaact i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12233021 13 - 131632457 -agaaattaaaact i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2855063 13 - 6458163 -agaaattaaaact i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826714 13 - 106825570 -agaaattaaaact i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66916600 13 - 84719076 -agagattaaaact i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH570308 472572 0 - 2504864 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=-1265.000000 s mm10.chr1_GL456221_random 84197 26 + 206961 --aacataattaaaaa----aatctttgt--tta-- s rn5.chr9 29217043 21 - 121549591 --ATAA-----AAAAA----AAGCTTTGT--TTA-- i rn5.chr9 C 0 C 0 s hg19.chr2 12132429 26 - 243199373 --aataattttaaaat----attaattca--tgt-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 12072287 28 - 247518478 --aataattttaaaat----attaattcatgtaa-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12233034 32 - 131632457 --aataattttacaatattaattcatgtaaaagt-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2855076 26 - 6458163 --aataattttaaaat----attaattca--ttt-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826727 26 - 106825570 --aataattttaaaat----attaattaa--tgt-- i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66916613 23 - 84719076 --aattgtttaaaaat----atttgtcta------- i equCab2.chr6 C 0 I 6603 s dasNov3.JH566347 60057 32 - 1805508 tggagagttttaatat--ttgttaattcc--tttca i dasNov3.JH566347 n 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=54279.000000 s mm10.chr1_GL456221_random 84223 40 + 206961 aagtgaaataat--------------ttggtc----aagga--agtatgtgagagaaaat--- s rn5.chr9 29217064 44 - 121549591 AAGTGAAACAAT--------------TTGGTCACATAACCA--ACCGTGTAGGAGAAAAT--- i rn5.chr9 C 0 C 0 s hg19.chr2 12132455 60 - 243199373 aaaagtaacaataataaaccaattgcctgttaacataaatagcattattttatgaaaagt--- i hg19.chr2 C 0 I 5 s panTro4.chr2B 12072315 58 - 247518478 a--agtaacaataataaaccaattgcctattaacataaacagcattattttatgaaaagt--- i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 12233066 54 - 131632457 aacaataataaa------ccaattgcctgttaacataaatagcattattttatgaaaagt--- i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 2855102 60 - 6458163 aaaagtaacaataataaaccaattgcctgttaacataagtaacattattttatgaaaagt--- i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 12826753 60 - 106825570 aaaagtaacaataataaaccaattgcctgttaacataaataatgttattttatgaaaaat--- i rheMac3.chr12 C 0 I 5 s equCab2.chr6 66923239 52 - 84719076 aagagtaacact---aaatcaatcac---ttaacataaaaa--cattttttatgaaaaat--- i equCab2.chr6 I 6603 I 3 s dasNov3.JH566347 60089 61 - 1805508 --aagtaacaacaataaaccaattacttgctaacatagataacatatatttatgaaaaataaa i dasNov3.JH566347 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e micMur1.scaffold_3075 119718 602 - 176633 I a score=12285.000000 s mm10.chr1_GL456221_random 84263 3 + 206961 tat s rn5.chr9 29217108 3 - 121549591 TAT i rn5.chr9 C 0 C 0 s hg19.chr2 12132520 3 - 243199373 tat i hg19.chr2 I 5 I 1 s panTro4.chr2B 12072378 3 - 247518478 tat i panTro4.chr2B I 5 I 1 s gorGor3.chr2B 12233125 3 - 131632457 tat i gorGor3.chr2B I 5 I 1 s nomLeu2.GL397366 2855167 3 - 6458163 tat i nomLeu2.GL397366 I 5 I 1 s rheMac3.chr12 12826818 3 - 106825570 tat i rheMac3.chr12 I 5 I 1 s micMur1.scaffold_3075 120320 3 - 176633 tat i micMur1.scaffold_3075 I 602 I 1616 s equCab2.chr6 66923294 3 - 84719076 tat i equCab2.chr6 I 3 I 3 s dasNov3.JH566347 60150 3 - 1805508 tat i dasNov3.JH566347 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I a score=148506.000000 s mm10.chr1_GL456221_random 84266 94 + 206961 -ttctgaagc--aaaaacaaacttag----aagacgggtgtcc---atgcaagctcctgcagttctcagtgat----gtcgggcttcgtgagaa-acaggtagatgctt s rn5.chr9 29217111 94 - 121549591 -TTCTGAAGC--AAAAACAAAATTAG----AAGACAGGTGTCA---GTCCGTGTTCCCACAGCTCTCAGTGAT----GCTGGGCTTCATGAGAA-ACAGGTAGATTCTT i rn5.chr9 C 0 I 128 s hg19.chr2 12132524 101 - 243199373 -ttctaaaac----aaaaaaaattagtgaaaagagtgacatca---ttttatgtttgtgcaaatctctttgattgtgagtgagctttataaaaagacagctggattcct i hg19.chr2 I 1 C 0 s panTro4.chr2B 12072382 102 - 247518478 -ttctaaaac---aaaaaaaaattagtgaaaagagtgacatca---ttttatgtttgtgcaaatctctttgattgtgagtgagctttataaaaagacagctggattcct i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 12233129 103 - 131632457 -ttctaaaac--aaaaaaaaaattagtgaaaagagtgacatca---ttttatgtttgtgcaaatctctttgattgtgagtgagctttataaaaagacagctggattcct i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 2855171 102 - 6458163 -ttctaaaac---aaaaaaaaattagtgaaaagagtgacatca---ttttatatttgtgcaaatctctttgattgtgagtgagctttataaaaagacagctggattcct i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12826822 103 - 106825570 -ttctaaaac--aaaaaaaaaattagtgaaaagagtgacatca---ttttatgtttgtgcaaatatctttgatcgtgagtgagctttataaaaagacagctggatccct i rheMac3.chr12 I 1 C 0 s equCab2.chr6 66923300 96 - 84719076 -ttccaaatt----taaaataattagtgagaagagtggcatca---ttttacatttttgcacatctctttaat----gtctagcttaatcaaag-acagctgggtgctT i equCab2.chr6 I 3 T 5777 s dasNov3.JH566347 60153 96 - 1805508 tttccaaaaccaaaaatacatattagtgagaagaatggcactgtgttttcattcctatccagatccctttcat----gtctggcttaataaaag---------agtctt i dasNov3.JH566347 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=22389.000000 s mm10.chr1_GL456221_random 84360 13 + 206961 agagctgcgtctg s rn5.chr9 29217333 13 - 121549591 ACAGTTGCTTCTG i rn5.chr9 I 128 C 0 s hg19.chr2 12132625 13 - 243199373 acaactgtttctg i hg19.chr2 C 0 C 0 s panTro4.chr2B 12072484 13 - 247518478 ataactgtttctg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12233232 13 - 131632457 ataactgtttctg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2855273 13 - 6458163 ataactgtttctg i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12826925 13 - 106825570 ataactgtttctg i rheMac3.chr12 C 0 C 0 s dasNov3.JH566347 60249 13 - 1805508 cgatctgcttctg i dasNov3.JH566347 C 0 I 74979 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e equCab2.chr6 66923396 5777 - 84719076 T e tarSyr1.scaffold_28366 18138 1 - 22953 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=81750.000000 s mm10.chr1_GL456221_random 84373 81 + 206961 aactcacgcacctgactg-tggctgtggctgagga-tggggagaggatctcgctgcacatggaACTCCAGTCCTTTGCAAGGG s rn5.chr9 29217346 79 - 121549591 AACTCATGCACCTGATGGATTGCTGTGGCTGAAGA----GGAGAAGGTCTAGCCTTACATGGAACTCCAGTCCTCTGTGAGGG i rn5.chr9 C 0 C 0 s hg19.chr2 12132638 78 - 243199373 cattcagttg--tgatatgttgctttgattgaaggatagaaagaaaatctggccttacacagatatctag---tttaaaaggg i hg19.chr2 C 0 C 0 s panTro4.chr2B 12072497 78 - 247518478 cattcagttg--tgatatgttgctttgactggaggatagaaagaaaatctggccttacacagatatctag---tttaaaaggg i panTro4.chr2B C 0 I 857 s gorGor3.chr2B 12233245 78 - 131632457 cattcagttg--tgatatgttgctttgattgaaggatagaaagaaaatctggccttacacagatatctag---tttaaaaggg i gorGor3.chr2B C 0 I 847 s nomLeu2.GL397366 2855286 78 - 6458163 cattcagttg--tgatatgttgcttttattgaaggatagaaagaaaatctggcctcacacagatttctag---tttaaaaggg i nomLeu2.GL397366 C 0 I 848 s rheMac3.chr12 12826938 78 - 106825570 cattcatttg--taatatgttgccttgattgaaggatagaaagaaaatctggcctcacacagatatctag---tttaaaaggg i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e equCab2.chr6 66923396 5777 - 84719076 T e tarSyr1.scaffold_28366 18138 1 - 22953 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=5822.000000 s mm10.chr1_GL456221_random 84454 65 + 206961 CACTGCATGCTCTTAACCAGCCCCATCATC-TGTCAGCTAGACTCTGAATCCTTATCTCTGGTACT s rn5.chr9 29217425 60 - 121549591 CACCCCGTGCTCTTA-----CCCCATCACC-TGTCAGCTACACTCTGAATCCATGTCTCTGCCACT i rn5.chr9 C 0 C 0 s hg19.chr2 12132716 53 - 243199373 -------tgaggtaa-----tttaacagtcttttgagatat-ctgtggatattcacctttaatact i hg19.chr2 C 0 C 0 s rheMac3.chr12 12827016 52 - 106825570 -------tgaagtaa-----tttaatagtc-tttgagatat-ctgtggatattcatctttaatact i rheMac3.chr12 C 0 I 15084 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e equCab2.chr6 66923396 5777 - 84719076 T e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2855364 848 - 6458163 I e gorGor3.chr2B 12233323 847 - 131632457 I e panTro4.chr2B 12072575 857 - 247518478 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=67.000000 s mm10.chr1_GL456221_random 84519 2 + 206961 GT s rn5.chr9 29217485 2 - 121549591 GT i rn5.chr9 C 0 C 0 s hg19.chr2 12132769 2 - 243199373 ac i hg19.chr2 C 0 I 108 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12827068 15084 - 106825570 I e equCab2.chr6 66923396 5777 - 84719076 T e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2855364 848 - 6458163 I e gorGor3.chr2B 12233323 847 - 131632457 I e panTro4.chr2B 12072575 857 - 247518478 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=7706.000000 s mm10.chr1_GL456221_random 84521 112 + 206961 TGTTCTCTGCTAAAATAAACTGTTACGCCagctgcgtgtg-----atagcctgtgccgataatcccagcacttaggaggtaaaggcgggtagatctctttgtgtccaaTCTCTTTGA s rn5.chr9 29217487 117 - 121549591 TGCTCTCTGTTAAAATAAAATGTCACACCagctgagcgtgatagcatagcccgtgcctataatcctagcacttaggaagcaggggcaggtggatctctttgtatccaatctctttga i rn5.chr9 C 0 I 124 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12827068 15084 - 106825570 I e equCab2.chr6 66923396 5777 - 84719076 T e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2855364 848 - 6458163 I e gorGor3.chr2B 12233323 847 - 131632457 I e panTro4.chr2B 12072575 857 - 247518478 I e hg19.chr2 12132771 108 - 243199373 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 84633 111 + 206961 tctttctttctttctttctttctttctttctttctttctttctttctttctttcttttttttttttttGGGTTtttttttaatacagtggtttggtttgtttgtttgtttg e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12827068 15084 - 106825570 I e equCab2.chr6 66923396 5777 - 84719076 T e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2855364 848 - 6458163 I e gorGor3.chr2B 12233323 847 - 131632457 I e panTro4.chr2B 12072575 857 - 247518478 I e hg19.chr2 12132771 108 - 243199373 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I e rn5.chr9 29217604 124 - 121549591 I a score=7767.000000 s mm10.chr1_GL456221_random 84744 145 + 206961 tttgtttgtttgtttgtt-atgtacccctagctggcttcaaactcactatgtaaatcagcctggctccaaattcagaaatataagatacacttgcctctgcctaccaagtactcagattcaacgtgtgaccctccacatctggctC s rn5.chr9 29217728 125 - 121549591 tttgtttgtttgtttgtttatgtagtcctagctgacttcaaactcactgtggagatcagcctggcttcaaactcagaga-----gatacacttacccctgcctaccaagtactcaaattaaac----------------ctgcctc i rn5.chr9 I 124 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12827068 15084 - 106825570 I e equCab2.chr6 66923396 5777 - 84719076 T e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2855364 848 - 6458163 I e gorGor3.chr2B 12233323 847 - 131632457 I e panTro4.chr2B 12072575 857 - 247518478 I e hg19.chr2 12132771 108 - 243199373 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=18483.000000 s mm10.chr1_GL456221_random 84889 173 + 206961 TCCATCTTGGACAGGTCTTCTACTCATATAAGACTTTATAATGTCTCAGACATTTGGAAAGTG------TTGAACTATATTGTGAGCTAGCAACACAGGCACATACATA---TTCTTGGGACAACTATGTAATTTGGAGACGTGACAGAAGTGTTCTTTCTATACTGAACTTTCCACTTTCC s rn5.chr9 29217853 173 - 121549591 cccatcTCAGATGGACCTGCTACTCAAATAAGATTTTATAAGGCCTCAGACGTTTGGAAAGCG------TTGAACTTTATAGTGAACTGGCAACATAGGCCCATACACAGTCTTCTTCGGCCAACTGTGGACTCTGGAGACGTGACAGAAGTATTTTATGTTTA---ACTTTCCCATTTTCC i rn5.chr9 C 0 C 0 s hg19.chr2 12132879 176 - 243199373 tgcattttgaatggaccttctactaatgcaagattttataatagtacagctgtttggaaaatatacatttggaattatacagTGagcttgtatctcaatcacacaagtg-ttttcttgaggccactgtggtacttcaggatgcaatagaagtgctttatatgtg-----ctcttcagttttt i hg19.chr2 I 108 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12827068 15084 - 106825570 I e equCab2.chr6 66923396 5777 - 84719076 T e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2855364 848 - 6458163 I e gorGor3.chr2B 12233323 847 - 131632457 I e panTro4.chr2B 12072575 857 - 247518478 I e calJac3.chr6 11736966 1423 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=4485.000000 s mm10.chr1_GL456221_random 85062 3 + 206961 CAC s rn5.chr9 29218026 3 - 121549591 CAC i rn5.chr9 C 0 C 0 s hg19.chr2 12133055 3 - 243199373 cac i hg19.chr2 C 0 I 512 s gorGor3.chr2B 12234170 3 - 131632457 CAT i gorGor3.chr2B I 847 C 0 s nomLeu2.GL397366 2856212 3 - 6458163 CAT i nomLeu2.GL397366 I 848 C 0 s calJac3.chr6 11738389 3 - 158406734 CAT i calJac3.chr6 I 1423 C 0 s equCab2.chr6 66917619 3 - 84719076 CAT i equCab2.chr6 T 5777 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e panTro4.chr2B 12072575 857 - 247518478 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=4756.000000 s mm10.chr1_GL456221_random 85065 6 + 206961 CCTCGG s rn5.chr9 29218029 6 - 121549591 CCTGGG i rn5.chr9 C 0 C 0 s gorGor3.chr2B 12234173 6 - 131632457 TCTTAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2856215 6 - 6458163 TCTTAG i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11738392 6 - 158406734 TCTTAG i calJac3.chr6 C 0 C 0 s equCab2.chr6 66917622 6 - 84719076 TCTCAG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e panTro4.chr2B 12072575 857 - 247518478 I e hg19.chr2 12133058 512 - 243199373 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=-2814.000000 s mm10.chr1_GL456221_random 85071 13 + 206961 GA-AGGAGG--------------------CAACT s rn5.chr9 29218035 14 - 121549591 AAGAGGAGG--------------------CAGCC i rn5.chr9 C 0 C 0 s hg19.chr2 12133570 13 - 243199373 ----GGAGGGT-----------------AAGACC i hg19.chr2 I 512 C 0 s panTro4.chr2B 12073432 13 - 247518478 ----GGAGGGT-----------------AAGACC i panTro4.chr2B I 857 C 0 s gorGor3.chr2B 12234179 12 - 131632457 -----GAGGGT-----------------AAGACC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2856221 12 - 6458163 -----GAGGGT-----------------AAGACC i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11738398 11 - 158406734 -----GAGGGC------------------AGACC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66917628 29 - 84719076 -----GAGGGCATCATGGAGGCTCAGGCATGACC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 42134 3275 + 53618 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=549697.000000 s mm10.chr1_GL456221_random 85084 338 + 206961 TGGAGTCTGCAATCCTCAGCTCTTAAGTATGTGAGGCCCTTCAAGGG---TTGGGAGACCCCTCACGAAGTGTCCACGGACAAAGAACAGTGTTTCTTTCTTC--------------TTCTTTCTTTTAGAGATCAGCAAAGAGGCATCAAAAACAAGTGGTATAAAGAGGCC------------CAGCACAGCACGAAGAACCACACAAGGTAAGGATGGGGCACTGTGGGTCTC-AAGATGCAGCCAGCGGGGACCCACAGTCAGAGCAGCCAGGCTGCTCTAAGCCAGACTTCC----------------------ACTGCCCTAAAGAGCCCTTTGGATATTTCTTTTCTCA--CCACAAC----CTTCTCATG----ATAGCTTAAGACTACTTA s rn5.chr9 29218049 343 - 121549591 TAGAGTCTGCAGTGCTCGGCTCTGAAGTATGAGAGGCCCTGTGAGG----TTGGGAGACTTCTCATGGAGCGTCCACAGGCAAGGAATAACATTTCTTCCTT------------------TTTCTTCTAGAGATCAGCAAGGAAGCATCAAAACCAAGGGCTAGAAAGAGGCCTCAGAAGAGGCCCCACACAGCAGGAAGAACCATACACGGTAAGGATAGGG-AGCCTGGGTCTC-AGGATGCAGCCAGCAGGCGCCCACACTAACAGCAGCA----CTCTCTAAGCCAGGCTTTC----------------------ACTGCCC-AAGGAGCCCTCTGGGTGTCTGTTTTCCCA--CCACAAC----CTTCCCATGCATGATAGCTTAAGACTACTTA i rn5.chr9 C 0 C 0 s hg19.chr2 12133583 366 - 243199373 TGGAGCCTCCAAGACTCAACTTCAGAGTGTGCAAGGGCCTTCCTGGGTCTCTGGGAGATTCTCCATGGTGTTTCC-----CAAGGGGCA--TTTACTAAGATC--------------TTTCATTTTCCAGAGATCATTGATGGCACTTCAGAAATGAATGAAGGAAAGAGGTCCCAGAAGACGCCTAGTACACCACGAAGGGTCACACAAGGTAAAACTTGGAGATTGCTGGTCTC-AGAGTACAGTCACCAGGAATCTAAATTCAGAGCTGTC---TTACACTGAGGcaatatttcttaacttttttttttcattattactgtgctagagagcccttctggatttttttttcttaatcaagacc----cttcccatg----atatt-tactactacaaa i hg19.chr2 C 0 C 0 s panTro4.chr2B 12073445 364 - 247518478 TGGAGCCTCCAAGACTCAACTTCAGAGTGTGCAAGGGCCTTCCTGGGTCTCTGGGAGATTCTCCATGGAGTTTCC-----CAAGGGGCA--TTTACTAAGATC--------------TTTCATTTTCCAGAGATCATTGATGGCACTTCGGAAATGAATGAAGGAAAGAGGTCCCAGAAGACGCCTAGTACACCACGAAGGGTCACACAAGGTAAAACTTGGAGATTGCTGGTCTC-AGAGTACAGTCACCAGGAATCTAAATTCAGAGCTGTT---TTACACTGAGGcaatatttcttaac-tttttttttcattattactgtgctagagagcccttctgga-ttttttttcttaatcaagacc----cttcccatg----atatt-tactactacaaa i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12234191 364 - 131632457 TGGAGCCTCCAAGACTCAGCTTCAGAGTGTGCAAGGGCCTTCCTGGGTCTCTGGGAGATTCTCCATGGAGCTTCC-----CAAGGGGCA--TTTACTAAGATC--------------TTTCATTTTCCAGAGATCACTGATGGCACTTCAGAAATGAATGAAGGAAAGAGGTCCCAGAAGACGCCTAGTACACCACGAAGGGTCACACAAGGTAAAACTTGGAGATTGCTGGTCTC-AGAGTACAGTCACCAGGAATCTAAATTCAGAGCTGTT---TTACACTGAGGcaatatttcttaac-tttttttttcattattactgtgctagagagcccttctgga-ttttttttcttaatcaagacc----cttcccatg----atatt-cactactacaaa i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2856233 360 - 6458163 TGGGGCCTCCAGGACTCAACTTCAGAGTGCGCAAGGGCCTTCCTGGGTCTCTGGGAGATTCTCCGTGGAGCTTCC-----CAAGGAGCA--TTTACTAAGATC--------------TTTCATTTTCCAGAGATCATTGATGGCACTTCAGAAATGAATGAAGGAAAGAGGTCCCAGAAGACGCCTAGCACACCACGAAGGGTCACACAAGGTAAAACTTGGAGATCGCTGGTCTCAAGAGTACAGTCACCAGGAATCTAAATTCAGAGCTGTT---TTACACTAAGGcaatatttctt----tctttttttcattatcactgtgctagagagcccttctggatttttttttcttaatcaagacc----cttcccatg----atatt----tactacaaa i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11738409 334 - 158406734 TGGACCCTCCAGGCCCCAGCTTTAGAGTGTGCAAGGGCCTTCCTGGGTCTCTGGGAGATTCCCCATGAAGCTTCC-----CAAGGAGTA--TTTACTAAGAT---------------TTTCTTTTTCTAGAGATCAGTGATGGCACTTCAAAATTGAATGAAGGAAAGAGATACCAAGAGACGCCTAGCACACCATCAAGGGTCAAGCAAGGTAAAACTTGGAGATCGCTAATTTC-AGAGTGCAGTCACC----------------------------------AGTTaatatttcttaacttttttttttaattatcactgtgctagagagtccttctaga-tattttttcttaatcaagacc----cttcccgtg----gtattttaataccacaaa i calJac3.chr6 C 0 C 0 s turTru2.JH490333 45409 370 + 53618 TGGAACCTCCAGCCTTCAGCTCCAGAGTGTGCAAGGTCCTTCCTGGGTCTCTGGGAGATTCCGCGTGGA-CTTTC-----TAGAGGGCA--TTTACTGAGATATAAGATGAATGTTGTTTCTTTTTTCAGAGGTCAGTGATGACACTTCAGAGATGGATGAAAGAAAGAGACCCCAGGAGCTACCCAGCACACCACCAAGACTCACCCACGGTAAAGGTGAGGGATTGCAAGTCTC-TCAGTATGGTCATCAGGAGCCCAAACTTAGAGCTGTT---TTACTCTGAGTcagagtttctcagc--cattttttcattatcact----------gcccatttaga-ttttttttc-taatcatgaaccctaccccccagg----atatttcaatactacaag i turTru2.JH490333 I 3275 I 5 s equCab2.chr6 66917657 379 - 84719076 TGGAGCCTCCAGCCTTTGGCTCCAGAGTGTGCAACGGCCTTCTGAGATCTCTGGGAGATTCCCCATGGAGCTTTC-----CAGAAGGCA--TTTTCTGAGATTTAAGAGGAATGCTGTTTCTTTTTTCAGAGGTCAGTGATGACGCTTCAGAAGTGAATGAAGGAAGGAGACCCCAGGAGCCACCTAGCACACCACCAGGAATCATGCACGGTACAGATAAGGGATTGCAAGTCTC-AGAGTGTGGTCATCAGGAGCCCAAATTCAGAGCTGTT---TTACTCTAAACcagagtttcttaac--ctttttttcattatcacttccttaaggagtccacttcag-gattttttc-caatcacaaaccc--ctccatatg----atattttaatatctcaaa i equCab2.chr6 C 0 I 7 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4923984 795 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=6449.000000 s mm10.chr1_GL456221_random 85422 3 + 206961 TAT s rn5.chr9 29218392 3 - 121549591 CTG i rn5.chr9 C 0 C 0 s hg19.chr2 12133949 3 - 243199373 tat i hg19.chr2 C 0 C 0 s panTro4.chr2B 12073809 3 - 247518478 tat i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12234555 3 - 131632457 tat i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2856593 3 - 6458163 tgt i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11738743 3 - 158406734 tat i calJac3.chr6 C 0 C 0 s turTru2.JH490333 45784 3 + 53618 tat i turTru2.JH490333 I 5 C 0 s equCab2.chr6 66918043 3 - 84719076 tat i equCab2.chr6 I 7 C 0 s myoLuc2.GL429770 4924779 3 - 30916457 tat i myoLuc2.GL429770 I 795 I 7 e pteVam1.scaffold_15734 3702 11116 - 27100 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=2239.000000 s mm10.chr1_GL456221_random 85425 9 + 206961 ATAGACA-TG s rn5.chr9 29218395 9 - 121549591 ATAGACA-GG i rn5.chr9 C 0 C 0 s hg19.chr2 12133952 10 - 243199373 atgtccattt i hg19.chr2 C 0 C 0 s panTro4.chr2B 12073812 10 - 247518478 atgtccattt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12234558 10 - 131632457 atgtccattt i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2856596 10 - 6458163 atgtccattt i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11738746 10 - 158406734 acgtccattt i calJac3.chr6 C 0 C 0 s turTru2.JH490333 45787 9 + 53618 atatccatt- i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66918046 7 - 84719076 --atcaatt- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4924782 7 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=4598.000000 s mm10.chr1_GL456221_random 85434 3 + 206961 CAT s rn5.chr9 29218404 3 - 121549591 CAT i rn5.chr9 C 0 C 0 s hg19.chr2 12133962 3 - 243199373 tat i hg19.chr2 C 0 C 0 s panTro4.chr2B 12073822 3 - 247518478 tat i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12234568 3 - 131632457 tat i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2856606 3 - 6458163 tat i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11738756 3 - 158406734 tgt i calJac3.chr6 C 0 C 0 s turTru2.JH490333 45796 3 + 53618 tct i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66918053 1 - 84719076 --t i equCab2.chr6 C 0 I 2 s myoLuc2.GL429770 4924789 1 - 30916457 --t i myoLuc2.GL429770 I 7 I 60 e pteVam1.scaffold_15734 3702 11116 - 27100 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=40157.000000 s mm10.chr1_GL456221_random 85437 48 + 206961 GGACTGGAC-----TATGTGTGTG-------GTGTTGT-TCATCTT---TTCCCCCTCCTATAA s rn5.chr9 29218407 41 - 121549591 GGACTG--------TGTGTGTGTG-------GTGTT-----ATCTT---TTTCCCCTCCTGAAA i rn5.chr9 C 0 C 0 s hg19.chr2 12133965 61 - 243199373 gtaatgtgtccatatgtatgtatgtatatctgcactatataagatt---tttctcagcactcaa i hg19.chr2 C 0 C 0 s panTro4.chr2B 12073825 61 - 247518478 gtaatgtgtccatatgtatgtatgtatatctgcactatataagatt---tttctcagcactcaa i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12234571 61 - 131632457 gtaatgtgtccatatgtatgtatgtatatctgcactatataagatt---tttctcagcactcaa i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2856609 61 - 6458163 gtaatgtgtccatatgtatgtatgtatatctgtgctttataagatt---tttctcagcactcaa i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11738759 61 - 158406734 gtaatatatacgtgtgtatgtgtgtatatctgcactttatgagatt---tttctcggcactcaa i calJac3.chr6 C 0 C 0 s turTru2.JH490333 45799 56 + 53618 gtactggatatatttatttgtgc-----tttatacataaaaagagt---ttttttcacccccaa i turTru2.JH490333 C 0 C 0 s equCab2.chr6 66918056 58 - 84719076 ggactgcatatatttacttgtgc-----tttatacataagaagaataagatttttttccccca- i equCab2.chr6 I 2 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4924790 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=12578.000000 s mm10.chr1_GL456221_random 85485 13 + 206961 -AAATATAATGTTT s rn5.chr9 29218448 13 - 121549591 -GGGGGAAATGTTT i rn5.chr9 C 0 C 0 s hg19.chr2 12134026 13 - 243199373 -gaatgagtttttc i hg19.chr2 C 0 C 0 s panTro4.chr2B 12073886 13 - 247518478 -gaatgagtttttc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12234632 13 - 131632457 -gaatgagtttttg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2856670 13 - 6458163 -gaatgagtttttc i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 11738820 13 - 158406734 -gaacgagtttttg i calJac3.chr6 C 0 C 0 s turTru2.JH490333 45855 12 + 53618 -gaaccaattttG- i turTru2.JH490333 C 0 I 1 s equCab2.chr6 66918114 13 - 84719076 ggagccaattttt- i equCab2.chr6 C 0 I 1 s myoLuc2.GL429770 4924850 12 - 30916457 -gaatcaattttt- i myoLuc2.GL429770 I 60 n 60 e pteVam1.scaffold_15734 3702 11116 - 27100 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=166267.000000 s mm10.chr1_GL456221_random 85498 105 + 206961 GACC--ACTGAGGAC--------CACTGCTGAGAATCTGTGT-TCGAGAATATTGCTCACCCTACACTGAAAATC------------------------TCCAGCTTA-----TGAATCAGGGTTGTTTCTAGAAATCCAGGCTC s rn5.chr9 29218461 113 - 121549591 GCCCCCACTGAGGACAGCATCACTGCTGCTGAGAATCTGC---TTGAGAATATTGCTTGCCCTACACTGAAAATC------------------------TCCAGCTTG-----TGAGTCAGGGTTGTTTCTAGAAATCCAGTCTC i rn5.chr9 C 0 C 0 s hg19.chr2 12134039 138 - 243199373 cact--actggcagcaatatcaccattactgagaatgAGTGTCCTAAGTATATTCATGGTACTATACTGAAAGTACAGCTTGTCGAAAGTGCAGCTTGATCCAACCCA-----TGGATCAAGCTTTTTCCTAGAATTCCAATCTC i hg19.chr2 C 0 I 17336 s panTro4.chr2B 12073899 138 - 247518478 cact--actggcagcaatatcaccgttactgagaatgAGTGTCCTAAGTATATTCATGGTACTATACTGAAAGTACAGCTTGTCCAAAGTGCAGCTTGATCCAACCCA-----TGGATCAAGCTTTTTCCTAGAATTCCAATCTC i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 12234645 138 - 131632457 cact--actggcagcaatatcaccgttactgagaatgAGTGTCCTAAGTATATTCATGGTACTATACTGAAAGTACAGCTTGTCCGAAGTGCAGCTTGATCCAACCCA-----TGGATCAAGCTTTTTCCTAGAATTCCAATCTC i gorGor3.chr2B C 0 I 5 s nomLeu2.GL397366 2856683 143 - 6458163 cact--attggcaacagtatcaccattattgagaatgAGTGTCCTAAGAATATTCATGGTACTGTACTGAAAGTACAGCTTGTCCAAAGTACAGCTTGATCCAACCCATGGGTTGGATCAAGCTTTTTCCTAGAATTCCAATCTC i nomLeu2.GL397366 C 0 I 5 s calJac3.chr6 11738833 128 - 158406734 cact--gttggtggcagtatcaccgctactgagaatgAGTATCCTAAGTATATTCGTGGCGCTGTACTGAAAGTACAGATTGTCCAAAG----------TCCAACCTA-----CAGATCAAGCTTTTTCCTAGAATTTCAATCTC i calJac3.chr6 C 0 I 5 s turTru2.JH490333 45868 97 + 53618 ------------GGCAAC-TTACCACTGCCAAGTATTCATGCTCTAAGTATATTCATGGTACTTTATTG-CAGTG------------------------CCAAGCC----------ATCCAGGTTTTTCCTAAGATCCCAATCTC i turTru2.JH490333 I 1 C 0 s equCab2.chr6 66918128 103 - 84719076 ------------ggcaacatcaccactgctgagagtTCCTGCTCTATGTGTATTCATGGTGCTCTATTGAAAGTG------------------------CCCAGCC-A-----TGGATCAAGTTTTTTCCTAAGGCTCAAAATTC i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 120323 1616 - 176633 I a score=-5509.000000 s mm10.chr1_GL456221_random 85603 2 + 206961 TT- s rn5.chr9 29218574 2 - 121549591 GG- i rn5.chr9 C 0 C 0 s panTro4.chr2B 12074042 2 - 247518478 TT- i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 12234788 2 - 131632457 TT- i gorGor3.chr2B I 5 C 0 s nomLeu2.GL397366 2856831 2 - 6458163 TT- i nomLeu2.GL397366 I 5 C 0 s calJac3.chr6 11738966 2 - 158406734 TT- i calJac3.chr6 I 5 C 0 s micMur1.scaffold_3075 121939 2 - 176633 TT- i micMur1.scaffold_3075 I 1616 C 0 s turTru2.JH490333 45965 2 + 53618 -CA i turTru2.JH490333 C 0 I 5 s equCab2.chr6 66918231 2 - 84719076 -CA i equCab2.chr6 C 0 I 5 e pteVam1.scaffold_15734 3702 11116 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e hg19.chr2 12134177 17336 - 243199373 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=18065.000000 s mm10.chr1_GL456221_random 85605 10 + 206961 CCCagatggc s rn5.chr9 29218576 10 - 121549591 GGCagacagc i rn5.chr9 C 0 C 0 s panTro4.chr2B 12074044 10 - 247518478 CTCACGTGGC i panTro4.chr2B C 0 I 52153 s gorGor3.chr2B 12234790 10 - 131632457 CTCACGTGGC i gorGor3.chr2B C 0 I 60998 s nomLeu2.GL397366 2856833 10 - 6458163 CTCATGTGGC i nomLeu2.GL397366 C 0 I 61399 s calJac3.chr6 11738968 10 - 158406734 CTCATGTGGC i calJac3.chr6 C 0 I 52080 s micMur1.scaffold_3075 121941 10 - 176633 CTCATGTGAC i micMur1.scaffold_3075 C 0 C 0 s turTru2.JH490333 45972 10 + 53618 CCCACATGAC i turTru2.JH490333 I 5 n 5 s equCab2.chr6 66918238 10 - 84719076 CTCACATGAC i equCab2.chr6 I 5 I 10951 s pteVam1.scaffold_15734 14818 10 - 27100 GAAATATGGT i pteVam1.scaffold_15734 I 11116 C 0 e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e rheMac3.chr12 12827068 15084 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e hg19.chr2 12134177 17336 - 243199373 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=-1802.000000 s mm10.chr1_GL456221_random 85615 5 + 206961 -tcaaa s rn5.chr9 29218586 5 - 121549591 -tcaga i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 121951 1 - 176633 -----C i micMur1.scaffold_3075 C 0 C 0 s pteVam1.scaffold_15734 14828 5 - 27100 TTCAA- i pteVam1.scaffold_15734 C 0 n 0 e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12827068 15084 - 106825570 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12134177 17336 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=800.000000 s mm10.chr1_GL456221_random 85620 16 + 206961 gtttaaggagcactgg s rn5.chr9 29218591 15 - 121549591 agttaag-agtactgg i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 121952 16 - 176633 TTTCTGGGAAAACTGG i micMur1.scaffold_3075 C 0 I 8237 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12827068 15084 - 106825570 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12134177 17336 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=22378.000000 s mm10.chr1_GL456221_random 85636 442 + 206961 ctgctcttccagaggacccaggttttgattcccagcatccacatggtggctcaaaatgatcttttaactccacctcaaggagatccaatgacttcttctagcctccgtgagcaccaggcatgatcgtggtatacagctatacatgcaagcaaaacaaaacacccatatacaGACATAAC--TATGCATAGGCAACCCGCACTGTTACGAAAGGACTCATGGGACAAAGGGTGCGTATGTAGGTCAGAGGATGAGTATTGTGAAGAGCAGAGGATGAGTTTAGTGGAATTCAGGCTCCTAGAATGAGATTCAGTGTGCCAGGCTTACATAGCAAGCCCCATTACTCCAGGAGCCAACTCTTGATCCCACCACACATCTGTGGCGCACAAAAACTACTGCTTGATTTGAGAAATG-----------AGCTCTGGAATCTTTTGTTTCTCCCCCACAG s rn5.chr9 29218606 439 - 121549591 ctgctttttcaga---------------ctcccagcatccacatggtggctagaaactgtccta-aattccagctctaggggatacaatgacttcttctggcatccaggagcactaggcatgattgtggtacacagctaaacatgcaagcaaaacaaaacacccacatacagacataacactacacataaGCAACCTGCACCGTTATGAAAGGACTTGTGGGCCAAAGGGTGCATGCGGCGGTTAGAGAATGAGTTTTGCAGAGTTTGGTCTCTCCTTGCACCTTTATTTGAGCTCCTGGAATCCGATTAAAATTGCCAGATTTACATAGCAAGCCCCATTACTATCAGCGCTAACTCTTGGTCCCACCACGCATCTCTGGCCCACAAAAGCTACTGCTTACCTTAAGAAACAAGCACCTACGTAGCTCTGAGGTcttctatttttcccccacaa i rn5.chr9 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12827068 15084 - 106825570 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12134177 17336 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 121968 8237 - 176633 I a score=8504.000000 s mm10.chr1_GL456221_random 86078 28 + 206961 TCTCTGTCCTCCCTTTACCCCTCCCTCT- s rn5.chr9 29219045 27 - 121549591 tctctctcctcccctt-cctctccctct- i rn5.chr9 C 0 I 603 s hg19.chr2 12151513 28 - 243199373 TCTCTGTCCTCTCCCT-CCCACTCCTCTT i hg19.chr2 I 17336 C 0 s rheMac3.chr12 12842152 28 - 106825570 TCTCTGTCCTCTCCCT-CCCATTCCTCTT i rheMac3.chr12 I 15084 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 121968 8237 - 176633 I a score=1146.000000 s mm10.chr1_GL456221_random 86106 4 + 206961 CTTG s hg19.chr2 12151541 4 - 243199373 CTTG i hg19.chr2 C 0 C 0 s rheMac3.chr12 12842180 4 - 106825570 CTTG i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 121968 8237 - 176633 I e rn5.chr9 29219072 603 - 121549591 I a score=1063.000000 s mm10.chr1_GL456221_random 86110 4 + 206961 TATT s rn5.chr9 29219675 4 - 121549591 TATA i rn5.chr9 I 603 C 0 s hg19.chr2 12151545 4 - 243199373 CATT i hg19.chr2 C 0 I 1907 s rheMac3.chr12 12842184 4 - 106825570 CATT i rheMac3.chr12 C 0 I 1938 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 121968 8237 - 176633 I a score=1042.000000 s mm10.chr1_GL456221_random 86114 17 + 206961 CTTCAAAAACTAACAAA s rn5.chr9 29219679 17 - 121549591 CTTAAACAACTAACGAA i rn5.chr9 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12842188 1938 - 106825570 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12151549 1907 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 121968 8237 - 176633 I a score=273.000000 s mm10.chr1_GL456221_random 86131 1 + 206961 T s rn5.chr9 29219696 1 - 121549591 T i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 130205 1 - 176633 t i micMur1.scaffold_3075 I 8237 I 10 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12842188 1938 - 106825570 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12151549 1907 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=-53.000000 s mm10.chr1_GL456221_random 86132 10 + 206961 CAGGACAGTG----- s rn5.chr9 29219697 15 - 121549591 CAGAACAAGGAGGAT i rn5.chr9 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12842188 1938 - 106825570 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12151549 1907 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130206 10 - 176633 I a score=792.000000 s mm10.chr1_GL456221_random 86142 6 + 206961 GCCAGG s rn5.chr9 29219712 6 - 121549591 GCCAGA i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 130216 5 - 176633 -gcaga i micMur1.scaffold_3075 I 10 I 739 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12842188 1938 - 106825570 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12151549 1907 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=564.000000 s mm10.chr1_GL456221_random 86148 6 + 206961 ACACTA s rn5.chr9 29219718 6 - 121549591 ACACTA i rn5.chr9 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12842188 1938 - 106825570 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12151549 1907 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9071943 3965 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=654.000000 s mm10.chr1_GL456221_random 86154 11 + 206961 TGAATGCCCAT s rn5.chr9 29219724 11 - 121549591 TGAATGTCCGT i rn5.chr9 C 0 C 0 s felCat5.chrC1 9075908 11 - 221441202 TGACTCCTAAA i felCat5.chrC1 I 3965 I 563 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12842188 1938 - 106825570 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12151549 1907 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=6990.000000 s mm10.chr1_GL456221_random 86165 46 + 206961 ACCAGGGCCTATGCTTCCCTCTGCTGGACGGTCCTTGTACTGCGCA s rn5.chr9 29219735 46 - 121549591 ACCAAGGACTATGCTGCCCTCTGCTGGAATGTTCTTGAACTGCGCT i rn5.chr9 C 0 C 0 s hg19.chr2 12153456 46 - 243199373 ACCAAACCCTTTTCTGCCTTCTGCTGGAAGATTGTTGTACTAAGCA i hg19.chr2 I 1907 I 140 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12842188 1938 - 106825570 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9075919 563 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=979.000000 s mm10.chr1_GL456221_random 86211 22 + 206961 TTGCGTGTATTGTTTCTCTGGG s rn5.chr9 29219781 22 - 121549591 TACGGCGGATTGTTTCTCCGGG i rn5.chr9 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12842188 1938 - 106825570 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12153502 140 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9075919 563 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=2811.000000 s mm10.chr1_GL456221_random 86233 40 + 206961 ACCTTATGCAGAGG-CTTGATTGGACAGGGTAAATCCAT-----------GC s rn5.chr9 29219803 51 - 121549591 ACCTTATGCAGAGG-CTTGCTCGGATGAGATAAGTTGGTATATTAACAAAGC i rn5.chr9 C 0 C 0 s rheMac3.chr12 12844126 39 - 106825570 actttatgcagaggtcctgAT--GAACATAtaaatgtgt-----------ac i rheMac3.chr12 I 1938 I 23 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12153502 140 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9075919 563 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=6969.000000 s mm10.chr1_GL456221_random 86273 36 + 206961 CCTTGCCCATCATGCTGTCATTTGATTGTCATGAT-------------------------G s rn5.chr9 29219854 36 - 121549591 GCTTGCCCATCGTATTGCCATCTGATCGTCATGAT-------------------------C i rn5.chr9 C 0 C 0 s hg19.chr2 12153642 61 - 243199373 ctttgatctacattttgccatttaattaccataataagtgagtgttatcagcccattttac i hg19.chr2 I 140 C 0 s rheMac3.chr12 12844188 61 - 106825570 ctgtgatccacattttgccatttaattcccataataagtaagtgttatcagcccgttttac i rheMac3.chr12 I 23 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66918248 10951 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9075919 563 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=40051.000000 s mm10.chr1_GL456221_random 86309 87 + 206961 GAACTCAAG-AAAAAGGTAAAAGACTCAGAGGAGCTAAAATCCACTTAGGTGCTTC----TGAATGCTTTTTTTTCCTTTACAATGAAAAAG s rn5.chr9 29219890 86 - 121549591 GGACTCAAGTAAAAAGGTAAAAGATTCAAAGGAGCTAAGATCCACGTAGGTGCTTC----TGAATGCTTTTTGT--CTTTACAATGAAAAAG i rn5.chr9 C 0 C 0 s hg19.chr2 12153703 89 - 243199373 agatTCAAT-TAAAGGGCAAAAGACTTGAATGAGCTAAAATCAACCTATGTGTTCCAATTTCAAGCCCTTTTTC--CTTTACACTAAAAATG i hg19.chr2 C 0 C 0 s rheMac3.chr12 12844249 89 - 106825570 agatTCAAT-TAAAGGGTAAAAGACTTGAATGAGCTAAAATCAACCTGTGTGTTCCAATTTCCAGCCCTTTTTC--CTTTACACGAAAAATG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66929199 89 - 84719076 GGATTCAGT-TAGAGCGTAAAAGACTTGCATGAGCTAAAATCAAACCAGGTGTTCTAATACCAAGTCCTTTGTT--CTTTACACTAAAAACA i equCab2.chr6 I 10951 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9075919 563 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=1885.000000 s mm10.chr1_GL456221_random 86396 4 + 206961 CGAA s rn5.chr9 29219976 4 - 121549591 CGAA i rn5.chr9 C 0 C 0 s hg19.chr2 12153792 4 - 243199373 TAAA i hg19.chr2 C 0 C 0 s rheMac3.chr12 12844338 4 - 106825570 TATA i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 9076482 3 - 221441202 -AAA i felCat5.chrC1 I 563 I 76 s equCab2.chr6 66929288 3 - 84719076 -AAA i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=11876.000000 s mm10.chr1_GL456221_random 86400 55 + 206961 TATTCCCAGATGCCTCTTTAGTCTTTTTTTATGAAACACTTA-AGGAAGCAGGAGc s rn5.chr9 29219980 55 - 121549591 AAATCCCAGATGCCTCTTTAGTCCTTTTTTATGAAACACTTG-AGGAAGCAGGAAC i rn5.chr9 C 0 C 0 s hg19.chr2 12153796 46 - 243199373 TGAACCTAGAAAGCAC---------CTACTCTCAAACACTGG-TGGAGGCAGGAGC i hg19.chr2 C 0 I 130 s rheMac3.chr12 12844342 46 - 106825570 TGAACCCAAATTCCAC---------CTCGTCTCAAACACTGA-TGGAGGCAGGAGC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66929292 43 - 84719076 CACCCCCTGGTC-------------TTTTTAGAAAACACTAGTAGGAGGCAAGAGT i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9076485 76 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=6300.000000 s mm10.chr1_GL456221_random 86455 21 + 206961 ccagatccatgctgactgttg s rn5.chr9 29220035 21 - 121549591 CCAGGCTTATGCTGACTGTTG i rn5.chr9 C 0 I 486 s rheMac3.chr12 12844388 21 - 106825570 CCTGGCAAACGTTGACAGTTG i rheMac3.chr12 C 0 I 1 s equCab2.chr6 66929335 21 - 84719076 CCAAGTGAATGTTGACAGTTG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12153842 130 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9076485 76 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=-1335.000000 s mm10.chr1_GL456221_random 86476 8 + 206961 -tcctc--cta s rn5.chr9 29220542 8 - 121549591 -tcctc--cta i rn5.chr9 I 486 C 0 s rheMac3.chr12 12844410 10 - 106825570 -CCCTCAGCAT i rheMac3.chr12 I 1 C 0 s equCab2.chr6 66929356 8 - 84719076 TTCATCAG--- i equCab2.chr6 C 0 I 3 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12153842 130 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9076485 76 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=1000.000000 s mm10.chr1_GL456221_random 86484 1 + 206961 c s rn5.chr9 29220550 1 - 121549591 c i rn5.chr9 C 0 C 0 s rheMac3.chr12 12844420 1 - 106825570 C i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 9076561 1 - 221441202 C i felCat5.chrC1 I 76 I 17 s equCab2.chr6 66929367 1 - 84719076 C i equCab2.chr6 I 3 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12153842 130 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=5545.000000 s mm10.chr1_GL456221_random 86485 16 + 206961 agcttcccctgacttc s rn5.chr9 29220551 16 - 121549591 agcttcccctgacttc i rn5.chr9 C 0 C 0 s rheMac3.chr12 12844421 16 - 106825570 AGTTTCTTCTCCCTTC i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66929368 16 - 84719076 AGCCTCTTCTGCCTCC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12153842 130 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9076562 17 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=67.000000 s mm10.chr1_GL456221_random 86501 1 + 206961 c s rn5.chr9 29220567 1 - 121549591 c i rn5.chr9 C 0 C 0 s felCat5.chrC1 9076579 1 - 221441202 T i felCat5.chrC1 I 17 I 150 s equCab2.chr6 66929384 1 - 84719076 T i equCab2.chr6 C 0 I 87 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12844437 0 - 106825570 C e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12153842 130 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=6700.000000 s mm10.chr1_GL456221_random 86502 128 + 206961 agcacatgcccctcccatattcatatctcactgaatccagttgattctgggtgtggagccatctgctggagcacgggcaacctaggaggtaccacacACCCCATCAGCTGGCAAGTTCCTCCTGCAGA s rn5.chr9 29220568 128 - 121549591 ggcacatccccctcccatgttcatctctcactgaatccaattaattctgggtatggagccatccgctggagcatgggcaacctaggaggcgccacacACCCCATCAACTGGCACCTTCCTCCTGTTGA i rn5.chr9 C 0 C 0 s rheMac3.chr12 12844437 98 - 106825570 ------TGCCCTATCCGTA---ACTTCTCATTAAACACCGAGTATC-----TGTGCTGCTGTCGCTTGTATGATGTGGAGTCTCGTGG------CATTTCtgatgatgtggaaagagt---------- i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66929385 87 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12153842 130 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9076580 150 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=4992.000000 s mm10.chr1_GL456221_random 86630 47 + 206961 GAC--------------GATACAGAGATAGCTCTGATCTGTCTGCATCCCAGGGCCAGCTC s rn5.chr9 29220696 50 - 121549591 GACATTTTGGAT-----GACAGAGAAAGAACTC------GTCTGCATCCTGGGCCAGTTCC i rn5.chr9 C 0 C 0 s hg19.chr2 12153972 60 - 243199373 gatgatgtggaaagagcgctagatactggg-tctggcatgtgtaaattccagtgccagctc i hg19.chr2 I 130 C 0 s rheMac3.chr12 12844535 43 - 106825570 -----------------gctagatactggg-tctggcctgtctcaattccagtgccagctc i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66929472 60 - 84719076 gacgctatgggaagagcacttgactagaag-tccagcacgtctggatttcaatgccagctc i equCab2.chr6 I 87 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9076580 150 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=845.000000 s mm10.chr1_GL456221_random 86677 1 + 206961 C s rn5.chr9 29220746 1 - 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 12154032 1 - 243199373 c i hg19.chr2 C 0 C 0 s rheMac3.chr12 12844578 1 - 106825570 c i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 9076730 1 - 221441202 c i felCat5.chrC1 I 150 I 137 s equCab2.chr6 66929532 1 - 84719076 c i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=28180.000000 s mm10.chr1_GL456221_random 86678 108 + 206961 CTGTCACTGTCA-GGGTTCCTCA---------CTCTCCCCATGTCTGAG-CCACTCACCCCATCTATTAAGT--GG--ATGATGCTTGCCTTCTTTTTGTTG-------------GAATGAATGATGCAATTC--TTG s rn5.chr9 29220747 108 - 121549591 CACACACTGTCA-CTGTTCCTCA---------CTGTCCCCACGTCTGAG-CCACTCACCCCATGTATTACAT--GG--ATGATCCTTGCCTTCTTTTTGCCG-------------GAATGAATGATGCAGTTC--TTG i rn5.chr9 C 0 C 0 s hg19.chr2 12154033 135 - 243199373 acctca-tgtaatatggtgaccaccggcaattctctctccacatctgaccccaagtccctcatctataaaatgagg--acagtcattgccttctctttcttacacattgttatgcggatagatgacacagtgcatctg i hg19.chr2 C 0 C 0 s rheMac3.chr12 12844579 135 - 106825570 acctca-tgtaatgtggtgaccactggcaattctctctccacatctgagcccaagtccctcatctataaaatgggg--acagtcgttgccttctcattcttacacattgttgtgaggatagacgacacagtgcatctg i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66929533 134 - 84719076 acctta-tacagtgtggtgaccactaggaattccgtctccagatccaagtctgagtcctccgtctataaatacgggtcatcatcattgccttccctttcttacaggttgttgtgaaaataaa-ggtacagtgc--gtg i equCab2.chr6 C 0 I 2 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9076731 137 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=1574.000000 s mm10.chr1_GL456221_random 86786 11 + 206961 -ATGGTCTTGAT s rn5.chr9 29220855 11 - 121549591 -ATGTTCTTAAT i rn5.chr9 C 0 C 0 s hg19.chr2 12154168 11 - 243199373 -CTGCTCTTACT i hg19.chr2 C 0 C 0 s rheMac3.chr12 12844714 11 - 106825570 -CTGCTCTTACT i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 9076868 11 - 221441202 GTGGCCTTTAC- i felCat5.chrC1 I 137 I 12 s equCab2.chr6 66929669 10 - 84719076 -CTGCTTTTCC- i equCab2.chr6 I 2 I 1 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=869.000000 s mm10.chr1_GL456221_random 86797 8 + 206961 CTGTCTGG s rn5.chr9 29220866 8 - 121549591 CTGTCTAG i rn5.chr9 C 0 C 0 s hg19.chr2 12154179 8 - 243199373 GTTTCCTT i hg19.chr2 C 0 C 0 s rheMac3.chr12 12844725 8 - 106825570 ATTTCCTT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66929680 8 - 84719076 ATTCCTTG i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9076879 12 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=1541.000000 s mm10.chr1_GL456221_random 86805 4 + 206961 GACG s rn5.chr9 29220874 4 - 121549591 GACA i rn5.chr9 C 0 C 0 s hg19.chr2 12154187 4 - 243199373 GACT i hg19.chr2 C 0 C 0 s rheMac3.chr12 12844733 4 - 106825570 GACT i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 9076891 4 - 221441202 GATG i felCat5.chrC1 I 12 C 0 s equCab2.chr6 66929688 4 - 84719076 GCTT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130221 739 - 176633 I a score=-423.000000 s mm10.chr1_GL456221_random 86809 1 + 206961 A s rn5.chr9 29220878 1 - 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 12154191 1 - 243199373 A i hg19.chr2 C 0 I 9 s rheMac3.chr12 12844737 1 - 106825570 A i rheMac3.chr12 C 0 I 31 s micMur1.scaffold_3075 130960 1 - 176633 G i micMur1.scaffold_3075 I 739 n 739 s felCat5.chrC1 9076895 1 - 221441202 G i felCat5.chrC1 C 0 I 132 s equCab2.chr6 66929692 1 - 84719076 G i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=1187.000000 s mm10.chr1_GL456221_random 86810 2 + 206961 CC s rn5.chr9 29220879 2 - 121549591 CT i rn5.chr9 C 0 C 0 s hg19.chr2 12154201 2 - 243199373 CT i hg19.chr2 I 9 C 0 s rheMac3.chr12 12844769 2 - 106825570 cc i rheMac3.chr12 I 31 C 0 s equCab2.chr6 66929693 2 - 84719076 CT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6328973 2434 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9076896 132 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=41410.000000 s mm10.chr1_GL456221_random 86812 122 + 206961 ------CCAGCCACCCTACTTCAGCCCTT-----------------CCCCCTCACCCA---GGCCCTTGGTCCACGGGTCA-TCCCTGGACATGCCACCTTCTCAGGTGTAGCCATCACCTTAGCATTTCCCCCTGTGTTCTGGAAGCA s rn5.chr9 29220881 124 - 121549591 ------CCAGCCACCCCACTTCCACCCTC-----------------CCCCTTGGTCCATGGGTCATAAAGTGCACAGGTCA-TCCCTGG-TGTTTCACCTTCTTGGGTGTAACCATCACCTTAGCATGTCTCCCTGTGTTTTGGAAGCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6331407 118 + 10418462 ------CCAGTCGCCCATCTCCCGCTCCT------------CCCAGCCCCCTCACGCCTG-GTCACACAGCTCCC--GTCC-TTCCCAGGCCTCTCATCTTTCCATGCATAATTTTCACCTCGG-GTTTTTCTCTGAGATT-------- i speTri2.JH393335 I 2434 C 0 s hg19.chr2 12154203 143 - 243199373 ------CCCACCGCCCCATCTCCACCCCCAATCATCCCCTCCCCAGACCCCTCATGTATACATCATAGAGCTCCCAAATCACTCCCCAGGCCTGTGGTCTTTCCATGCATAATTTCCACCTTGTGCTCCTTCCTCATGTTCTGTAGGAA i hg19.chr2 C 0 I 1 s rheMac3.chr12 12844771 143 - 106825570 ------cccaccactccatctccaccccccgccatccccttcccacaccccTCGTGTATACATCATAGAGCTCCCAAATCATTCCCCAGGACTGTGGTCTTTCCATGCATAATTTCCACCTTGTGCTTCTTCTCCACATTCTGTAGGAA i rheMac3.chr12 C 0 I 1 s equCab2.chr6 66929695 130 - 84719076 TTTCCTCCGGCCACACCATCTCCCCACAG-----------------ACCCTTCTTGTACAGATCATGGAGCTCCCAGATCTTCCCCCAGGCC--ACGTCTTTCCAGGCACAGTTTTCACCTTGGGCCTTTTCCCTGTGTCCTGTGAGAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9076896 132 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=1911.000000 s mm10.chr1_GL456221_random 86934 1 + 206961 T s rn5.chr9 29221005 1 - 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6331525 1 + 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 12154347 1 - 243199373 T i hg19.chr2 I 1 C 0 s rheMac3.chr12 12844915 1 - 106825570 T i rheMac3.chr12 I 1 C 0 s felCat5.chrC1 9077028 1 - 221441202 T i felCat5.chrC1 I 132 I 71 s equCab2.chr6 66929825 1 - 84719076 T i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=30056.000000 s mm10.chr1_GL456221_random 86935 71 + 206961 -CCACAAGCTGCTCTT-TGGATTGCTAATTAGG---TTTTTTCCATCCCATCTCTCCCCTTCCTTATCAGGCTTCC------------ s rn5.chr9 29221006 74 - 121549591 -CCATGAGCTGGTCTT-TGGGTGACTAATTAGGGGTTTTTTTCCATTCCATTTCTCCCCTTCCTTATCAGCCTTCC------------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 6331526 68 + 10418462 -CCAGGAATTAGTCTT-CGGCTTGCCAATTAGG---GTTTTTCCATCCTG---CTGCCCGGCCTCTCTGGGCTTTC------------ i speTri2.JH393335 C 0 I 7 s hg19.chr2 12154348 72 - 243199373 -CCTGGAGTTGGTCTTCTGGATTATGAATTCGT---TTTTTACCATGCCGCTATTCCTCATCTCGATTAGGCTTTT------------ i hg19.chr2 C 0 C 0 s rheMac3.chr12 12844916 72 - 106825570 -CCCGGAGTTGATCTTCTGGATTATGAATTCGT---TTTTTACCATGCCGCTATTTCTCGTCTGGATTCAGCTTTT------------ i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66929826 85 - 84719076 TCCTGGTGTTGGTCTTCCCCATCACTAATTGGG---TTTTTTCCATTCTGCTCTTCCTTGTCTCTGTTAGATATTTCTTTTCATTTCC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077029 71 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=1174.000000 s mm10.chr1_GL456221_random 87006 2 + 206961 TC s rn5.chr9 29221080 2 - 121549591 TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6331601 2 + 10418462 TT i speTri2.JH393335 I 7 C 0 s hg19.chr2 12154420 2 - 243199373 CT i hg19.chr2 C 0 C 0 s rheMac3.chr12 12844988 2 - 106825570 CT i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 9077100 2 - 221441202 TT i felCat5.chrC1 I 71 I 83 s equCab2.chr6 66929911 2 - 84719076 TC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=23941.000000 s mm10.chr1_GL456221_random 87008 80 + 206961 CATAGATGCTCCTTCACATCAGGAAATTGTT--------------------TTTTATCTTTAATTGCTTACTT------ACAGGCTCCCGGTTGTTTGCTCAC----GCT s rn5.chr9 29221082 79 - 121549591 CATAGAAGCT-TTTCACATCAGGAAATTGTT--------------------TTTTATCTTTAATTGCTTCCTT------GCATGCTCCCGGTTGTTTGCTCAC----GCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6331603 82 + 10418462 CCTACCTGCT-CTTC----------TTTGTTTCCACCCTC----------CTTTGCTCTTGAATTGCTTCCCC-------CAGGCTCCCAGCTGTGTGCTCACACTTGCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12154422 99 - 243199373 TCTTAGTTTT-CTCCAC--------CTTGCTTTTCCTTTCCCTGAG--CTCTCTGTTCTCTAATTGCTTGCTTTTCACAGCAGGCTCCTCATTGTTTGCTCATGCTTCCT i hg19.chr2 C 0 C 0 s rheMac3.chr12 12844990 99 - 106825570 TCTTAATTTT-CTCCAC--------CTTGCTTTTCCTTTCCCTGAG--CTCTCTCTTCTCTAATTGCTTGCTTTTCACAGCAGGTTCCTCGTTGTTTGCTCACGCTTCCT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66929913 84 - 84719076 --------------CAC--------CAGGCTTTCCATTTCCACGAACTCTCTTTGTTCTTTAATTGCTCACTTTTCATAGCAGGCTCCTTGTTGTTTGCTGACACT---- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077102 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=4175.000000 s mm10.chr1_GL456221_random 87088 4 + 206961 AATG s rn5.chr9 29221161 4 - 121549591 AATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6331685 4 + 10418462 AATG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12154521 4 - 243199373 AATG i hg19.chr2 C 0 C 0 s rheMac3.chr12 12845089 4 - 106825570 AATG i rheMac3.chr12 C 0 C 0 s felCat5.chrC1 9077185 4 - 221441202 TACG i felCat5.chrC1 I 83 n 83 s equCab2.chr6 66929997 4 - 84719076 TATA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=294.000000 s mm10.chr1_GL456221_random 87092 1 + 206961 A s rn5.chr9 29221165 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6331689 1 + 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 12154525 1 - 243199373 G i hg19.chr2 C 0 C 0 s rheMac3.chr12 12845093 1 - 106825570 G i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66930001 1 - 84719076 A i equCab2.chr6 C 0 I 30704 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=4139.000000 s mm10.chr1_GL456221_random 87093 7 + 206961 GGGCCTA s rn5.chr9 29221166 7 - 121549591 GGGCCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6331690 7 + 10418462 TGATCCA i speTri2.JH393335 C 0 I 37531 s hg19.chr2 12154526 7 - 243199373 GGACCTA i hg19.chr2 C 0 C 0 s rheMac3.chr12 12845094 7 - 106825570 GGACCTA i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=5250.000000 s mm10.chr1_GL456221_random 87100 18 + 206961 ----CACCAGCTGTTGCAGCT-C s rn5.chr9 29221173 19 - 121549591 ----AACCAGCTGCCGCAGCTCC i rn5.chr9 C 0 C 0 s hg19.chr2 12154533 21 - 243199373 AACTCACC-GCTGCTGCAGCT-C i hg19.chr2 C 0 I 34222 s rheMac3.chr12 12845101 21 - 106825570 AATCCACC-GCTGCTGCAGCT-C i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=91.000000 s mm10.chr1_GL456221_random 87118 12 + 206961 -CTTAGACTaggg s rn5.chr9 29221192 12 - 121549591 -CTTAGAATAAGG i rn5.chr9 C 0 C 0 s rheMac3.chr12 12845122 12 - 106825570 ACTTTACAAAGG- i rheMac3.chr12 C 0 I 38445 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12154554 34222 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=191.000000 s mm10.chr1_GL456221_random 87130 2 + 206961 ct s rn5.chr9 29221204 2 - 121549591 CT i rn5.chr9 C 0 I 9714 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12154554 34222 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 87132 2368 + 206961 tgattagccctggccctctagctctgttgcccgaagccattgtagtttctctcgtgggccatttccacctagtgactgcagcttgccttggcaaacttcctggatttctgatttccattgtaatataggcttcacctttacagcttcatgcacagcagactcggatatcccatgaagagaatatggccTGGTGTTAATGTGTAAAGGAATGTGTTAGGGGTTTCtttttttttttaataatttttattaggtattttcctcatttacatttccaatgctatcccaaaagtcccccataccctccccccccacacaaacactcccctacccacccactcccaatttttggccctggcattcccctgcatataaagtttgcaagtccaatgggccgctctttccattgatggccgactaggccatcttttgatacatatgcagatagagtcaagtgctcctgggtactggtttgttcataatgttgttAGGGGTTTCTTTTGTCATGGTTGTTGTTGTTTTCAGATTGTGTCTTGCCTTCTGGAGGGTTAGAGGTAGGTTTTGGGTTTTGGtttgtttggaatttttaagacagggtgtctttatgtggccttagctgtcctggaacttgctctgtagaccaggctggcctcgaactcagagacccacctgtgctgggattaaaggtgttcacctcactgccgggctGAGAGACTTCTTTTACAAGAAGCTTTAGATTCTGTTTGCAGATGTAAGATGACTCTGTGCCTGGCTGGAAGTATGAACAGCACCATCTGCTTAACCCTGACTACACAACACAGATGATAAATTACTTACTCCTGGGTATAGAGAAGGTCCTCTCTATAAACTTGTTAGAGTGAACTGGGACTGTATGTAGATTCCTATAAGCAAATTAAAATCATATCAGAAAAACCAAACAAAAGATACCAGTCTGAGAAAGCACGTGGCTCCCTCATCTATGCCCTTTAAAGAGAACACCTGGCACTGTGATGGTGATGGTCCCCACCAACCTATCATCTGACCACTCCGTAGGTGCATCGAGGGTCTAATGGGTGAAGAATTCCTGAAGTCCCAATGCCTTCGATTCAGCCTGGTCCCCACTTTGCCACACGTTACTCAAGTTGCCATCTACCATCCTCTTATTGATCCATCTTGCGCTGCCATCCAGTGCAATTGCTCATCCATTCATCTGGACCCAGTCTTGCCTTTTAGACTCTGCAGTGGAACTCAACTCTACAGCTCAACCATGACCCTGCAGTCAAATCCAACCATGACTTCAGTGCTTGTCCAGAGGGCTCAGGGTCCTTTGTTATCTCACCCTACAGACTCCTATGACTTCCCAGCTGTCTCCCAACTCTGGCTTGTCAAGTGTTTGCCACCTTAACTCTTGGTAGCTAGCCTGTAATATATAGATATAGGGATAGAGGTAGATAGAGATATGTTACATATGACTTATGTTGTTAGTAAGTTATAAACTTATGTTTAATGTATCAGCTAAGAGTTAGTAATTATGTTGGAATGGCCTGTTTGCCTTGGCCAGGGTCATTAAGGAAAGCAGAGCTATCTGACAGATGACTACCAGTGAAACCACTGCTTGTGGATTTGTTATTATTCAATAAAATGTTTTAGAAAGACATAAATACGTTTACCTCTGTTTGTGACACAGCACGCTCACGACaccctgctacgcattgcttggctccagtggcctcctggaaccgtgttgcaagctttcatgactccctcactctggcattttgaaccttgcaacatcagtaccatgcagatggtacccagctgctgtcagctcaagatgcggcctgtcccccttgaacaactaccacagcctttctgtgacttcataactgaactaaaaagacacttacttagttaagcagccatttttcaacagggctcccttgaggctctgtcattgttagacgcgctctcattgcaaatgaatttacactgctatcttctggagctttccatgagtgggttcttgccctcaaagcacctttcctgttgttcttgtgcaaagtcggaggttatctctttaatgttgctaatcttttaacaattgcatgtactttacctacacctgctctgtccccaacgttaacaagcgtcggggccctttgctcatcaaacttcatattagtgtcacaacttcaaccagtttatagtccttctctccaaattacacattttgcctgtcttctcaccttccctcactgtaaatctgggtaaatacagtaggcagtaaccattctatagcccaggtgatacactgccttaaaattttcctcactaaacaaattattttatttttatattttaaatattttaa e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12154554 34222 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29221206 9714 - 121549591 I a score=35279.000000 s mm10.chr1_GL456221_random 89500 534 + 206961 atttaaattaaatgtaaatattttaacatt-cagtctcactcaaatttttagaatgcaggc------------agactctatgccaactgtaacataattgaccactaccccagttcctgttagagtctttctgaaacttcatgaacctggttgacagtctcaaccttaaatctcccactagatcagcccattgaactttagggctgctctagcctacaaggccaactctttctatttttcccacagagctcttcctaatgtctataaaccacctgtcaag--taatgacatcagggac-tcacttcctagtgtctggtttctgtggtgacacacctgacaagaagcaatgtaaaggac-acacatttgctttgcctcttggtttgagggtacactgcatcatggcagggtgggcatggcccaggggcagctcatcacTGTAA----------------ATACTTGTTTACATCTCGGTGGATCAGGAATTAATATTAAACTACAAAATGTAAGGTCCTGTGACCTGAAGTT-------------AAAGCTGCACCTGTGTTAAGGATTCTATAATGGtg s rn5.chr9 29230920 580 - 121549591 ATTAAAATTCAATTTAAATATtttaaaatttcagcctcgctcaaatttttagaatacaggctgtgtggtagccagactctatgccaactgtaacattaatgacctctactccagttcctgtaagaatctttttgaaacttcacagacttggttgacagtctcaacctgtaatatcccaccagaacagccaattgaactctagggctgctctagcctacagagccaactctttccatttctcccacagaccccttccaaatgtctataaaccgcctggtcaggttaatgacatcaggaacctcacttcctagtgtcagttttctgtggtggcaggcctgacaagaagcaatgtaaagaaggacaattttgctttgcctcttggtttgagggtacagtgcatcatggcagggtaggcatggcataatggcagcttatcactgtagtggcagaagcatgaagatacttgtttacatctcgaTGGACCAAGAAATATCATTAAACTACAAATTGTAAGGTTGTATGACCTGAAGTTCCTAGGGAAgaaaagagctgcacctgtattaaagattctataatggtg i rn5.chr9 I 9714 I 521 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12154554 34222 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=19263.000000 s mm10.chr1_GL456221_random 90034 314 + 206961 actgactggtagaatcttcatgggaatgaagagctggaatgtttcaagtctagggaaaacttatcttagactattttatgctctcttcagagccacgcatcacctacctctgtggttgacctagtagcccgtgactataagattaaaacccttttagaatatactaatagtcccctagcttccaccaacccaaagggtaagattatcat----------------cagatagaggggtccccccactttgctatagccacctatccagcattcccaccaatgtattagaaaattgccttaatttatgattttattttcttaccatagaaa s rn5.chr9 29232021 308 - 121549591 actgactgggagaattctcatggtaatggggagctgtaatgttccaagtctagggaa-----acattagactactttatgccttcttcagagccatgcatcatcc-------------acctaatagcccatgactataagg-taaagtccttttggaata---taacagtcccctaacctctaccaacccagagggtaagactgtcatcagatatcatctgaggcagatagaggggttcccccactttgctgtaactgcctatccaacattcccaccaatgtattagaaaattgccttaatttgtgattttattttattaccataaaaa i rn5.chr9 I 521 I 200 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12154554 34222 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=26578.000000 s mm10.chr1_GL456221_random 90348 375 + 206961 tcatgaaactgttgccacattggtacatggcttttggggtaacctaagtctgtgctcccaggttgttcaatcatattgtgctccagagtaaactatctgatattcctcttgagatgaaacgtgtgatttttgcAACCAGCATccttctcccagtgactatttccctcagtcagatccacatctcaggggttacacaataccccaccaactggcatccatgtattccagtacatgagcctgcagggaatactAAatctcttgtctatggggaataatgcttcagtggagagtttgctgagatttctttaatgttctgcttctgactcttttggatctatgtccagaagtgaaattgctaaatcattttggcagttc s rn5.chr9 29232529 373 - 121549591 tcttgaaactgttgccacattggtacatggtttttggggtaacttaagtctgtgcacccaggttgttcagccgtattatattacagactaaactatctgatattctcctggagatgaaagttttgttttttgcaatctacaCccttctcccagtgactactt-cctcagttagatccacatctcaagggttacacaattccccaccagctggcattcaaatattgcagtacatgagcctggacggaacactAAatctcttgtttactgggaatagtccttcagtagaagatatgcagggatttctttaatgttctgcctctgactcttttggatctatgtccagaagtgagattgctaaatca-tttggcagttc i rn5.chr9 I 200 I 6610 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12154554 34222 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 90723 444 + 206961 taAGatttatttattatttatttatttatttatttatttattcatttgtttaGacactgtagctgccttcagacactccagacgagggcatcagatttttgttacagatggctgtgagctaccatgtggttgctgggatttgaactcgggacctttggaagagtagtcggtgctcttacccagcaagccatctcaccagcccGAAAAACTAACTAGAGTACCACAATGATTCCACTGGGGCACGATAAtttttgtttttgtttttgttttggttttggttttggttttggttttggttttggttttttcgagacagggtttctctgtgtagccctggctgtcctggaactcactctgtagaccaggctggccttgaactcagaaatcctcctgcctctgcctcccaagtgctgggattaaaggcatgtgccaccatgcccggct e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12154554 34222 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29232902 6610 - 121549591 I a score=6166.000000 s mm10.chr1_GL456221_random 91167 236 + 206961 CAagtttttaaaggaaactccatgcttctttctatattc-tcac-ccattttacaatgctactaacagtggaccaatgctccattttctctaaaactttgccaaca--tgttgtcttctatttggttggttggtttcggtagtagtcaacctgatgggtataatgtgata------tAT--------------TTGTGTCTAGTCACTCTCCAATAACACAAAGTCTTTTGGTCGTTTTCACCTCTAAAGAACAATCTCA s hg19.chr2 12188776 252 - 243199373 ttgattttttgaggaaccttcatactgttttctatagtggtcatactattttacaactgcaccggcaatccacaagtgttccaatttctccatatactcagcagcacttgttattttctgt------gttttgttttaatggtggctgtcataatggatgtgaggagataactcattatggttttgaattgcatttTGCCTAGTTATTCTA-AATAATA-AAAGTCCTTTGGTCATTATCAGCTCCAAAGAACAATCTCA i hg19.chr2 I 34222 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29232902 6610 - 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 91403 483 + 206961 GGGGGTGGCACATGGTCCCCTGAGCTACATTGTCTAGCTCTGGACTCACTCTTCGGTCCAGAGGAGTCTTGTGGGAAACCAAGAGAATCCTACTTCCTCGTGGAAACCTTCAAGAACCCCAAAACTTGGAACCCTGCCCAACCAATCCCATTCCAGTAAGAGTTGCCCACTATCCCAATTGATCCATCTGGGACAGCCTACAGAGATGAGTTGTgcgcagctatccttctacaacaaaccctggatatcctaatgaaactgaagcacaagaagaggattttaaattcaatctaatgaagctaataaaagcctttaaagaagacatgaataaattccttaaggaaatacatgaaaatacattcaagcaagctaaagcattaaaagaggaagcaaataaacataaagaaatacaagaaaatatagtcaaacaggtgaaggatatgaataaaactgtCTCATAGAATGAGTTTGGCATtgagttca e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12189028 0 - 243199373 C e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29232902 6610 - 121549591 I a score=34671.000000 s mm10.chr1_GL456221_random 91886 600 + 206961 atatattctcaactatgcaaaatataaggatacaatatgaattacatgaagggggcttcatggacctaaaaaaaagaggctgctgcagtgtgagccaccttgtcagaaagatattaaggaaggaaataacaagatttagagagtggtgatttcatggcaagatcccac-cagctaagtttattgtttggactt------caggcagattcctgaattcaaggttagcctgggacagagctagttgaagcccaggagtggtggggatcccacccagctagcttattgtctttacttatag---caagcagatatctgaattcatttgccatgttttgt-----------------------------------------tttattttgttttttaagaatttgctgttcttttattagaatcaagttgctacagtcataaaatgctgactcgtgggataaccaaaaagaa-cctcaagaaaatgactgaattgatatgcaaatgaaagactgggctttgatctgcaagagctaagcaacctggatgagctgtctggagagaaaacagagttcttttagaattttt------ttctagcagctacccagagagaactgcttggagagcaaatacaggtcttttacaatctttttcctgca s rn5.chr9 29239512 640 - 121549591 atactttctcaactatgcaaagtataagggtgcaatatgaattatatga--ggggcttcatgggcctaaaaaacagaggcagctacagtatgagccatcttgtcagaaagatattaaggaaggaaataaagagatttagagagtggtgattgca---gaagatcccactcagctcaatttattgtttgtgcttacaaaggcagcagattcctgagttcaaggtcagcctga-atagagctagttgaggcccaggcatggtggagatcccacccagttatcttattgtctgtgcttatagaaccaggcagatctctgaattcatttgccatgtttaaaaaaaaataatatatatacacacacacacatatatatatatatatatatatatatatatatatttgctgtccttttctaagaatcaagtggctaaggtcataaaatgttgattcgtgggataaacaaaaggaaacctcaagtaaatagctgaattgatatgtaaataaaagactcagctttgatctacaagagctaagtaatctggatgagctg-----------accagagttcttttagagtttttgtttttttctggcagctacccaaagagaattgcttggagaggaaatatagctcttttagaa-cttttcctagca i rn5.chr9 I 6610 I 54 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12189028 0 - 243199373 C e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 92486 29 + 206961 agagagcaaaagagagctgtctgaggcag e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12189028 0 - 243199373 C e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29240152 54 - 121549591 I a score=124853.000000 s mm10.chr1_GL456221_random 92515 2017 + 206961 aggaaactgtctcatgcagaaag--ctgtcttgagcagaaagctatcttgagcatactacagatccaagagctatctacagagagctgtctagggagccatcttgagcagattacaaggcta---atcagctagtacccatgatttgacttttagtcatttttttggttggtggtgaacactctccttcctcagaaccctctccaagctgaggttgatccttagcagaactcaagaagttagataccaataatccaaataacccaattaaa-aaatgaggtacagagctaaatagagagttttcaacaaaagaatcttgaatggctgaaaaacacctaaagaaatgttcaacatccttagtcatcagggaaatgcaaatcaaaacaactctgagattccaccttacacctatcagaatggctaagatcaaaaactcaaagaacaacacatgctgacaaggttgtggagcaagagaaa-tactcctacactgctggg-ggaggacaaacttgtacaaccactctggaagtcaacttggcagttgctcagaaaattgggaatagttctacctcaagacccagctataccacacctgagcatgtacccagaagatgtgccaccatcccacaaggacatttgctcaactatgctca--gcagttttattcataataaacagaaactggaaacaacccagat-tccctcaactaaagaatggagacagaaaatgtggctcatttacacg-tggactactactcacccattaaaaa-caagaatatcaagaatttctcacacaaatggatagaactttaaaatatcatcctaagtgaggtaacccagacacaaaaggacatgcataatatgtactcacttataagtggatgttagacatagagtacaggataaccatgccatctataaccaacagacccaaagaagtcaaa-taacaaggagggtccaaggaaggatggttgaatctttctcagaaggggaaacaaaatagttattggacattaatggaaggagggaactggttggaaaaggggatgggaaggggagagggctggtaggtggagatcatacatgaggagagcaggggagagagaagg-agatcagaaatgggagtggccaatctttagaacatgccagagacctgggatagggggcaaccccagagggtctaatggatgcaactctagttgagaattctagcagtgagggatatggatcctgaagtggtcacttcctatagccaggcaggactcccactggagagataaggatagccacccacccaaaagccttcgactcaaaatgtgtcctgcctacaaaatatgcagggacaaagatggagcagagactgcaggaatgtccaacaataactggcccaacatgagacccatcccatgagcaagaaccagtccctcacactattaatgatactttgttatgcttgcagacaggaagctagtataactgtcctctgagaggcttcacacagccaacaatggaaaaagatgtagagactcatacccaaacatgagatggagctcagggaggcttatggaagatttaagagaaggattgagggatccaaagaatacagggactccacaggaagacaaacagagtcaactaacctgtaccttcagggactcccagagactgaaccaccaaccaaagagcaagcacaggctggactttggcccctgcacatatgtagtagatgaacagcttgatcttcatacaggtcccccaaaa-ctggaacaaaggctgtccttgagtctgttgcctgcctgcctgtggatcccgtgcccctaaatgaatgccttgtctggcctcagtgggagaggatccacctagtcactcagtgccttgatatg-----gggggggggatgttacacc-----------ttcctcttttcaaaagataaggaaaaggtagaatgaatagggggagggaggacttgtgtgatggggtcctgggaggacagaaagtgc-gatattagtttgtaaaatgaataaatttaaaaaaaAGAAG s rn5.chr9 29240206 1999 - 121549591 aagcagctgtcttgggcagagagaacaatctcaagcagagagctatctcaagcagactacagagccaagagctgtctacagagggctgtctagataaccatcttgagtggactacaaggctatctatcagcttgtatcgatgatttgacttttagtcattcttttggt-gctgctgaggacct--ctttctcagaaacctttccaagctgagtctggtccttggcagaactcaagaagttagacactaacaatccaaataacccaattaaagaaacggggtgcagagttacacagagaattctcaacaaaacaat-------ggctgaaag-catctaaagaaaagttcaacatccttactcatcagggaactgcaaatcaaaacaactctgaaattccatctcacacccatcagaatggctaatatcaaaaactcaaaggacaacacatgttggtaaggttgtggagcaaaggaaaatactcctccactgctgggtggagtgcaaacttgtacaaccactctggaagtcaacttggcagttactcagaaaattgggaa--------------gacccagctatgccacacctgaacttttacccaaaagatgcacaaccatc--acagggacacctgctcagctatgttcacaacagctttgttcatagtagccagaaactggaaacaacctaggtgcccctcaactgaagaatggataccaaaaatgtggttcgtttacacaatggaatactactcagccattaaaaaacaaggacatcatgaatttcacaggcaaatggatagaactagaa--------------tgaggtaacccagacccaaaaaaacatgcataatctgtactcacttataagtggatattagccatagagtacaggataaccatgt----tgtagtcgacagccccaaagaagccaaaataacaaggacagcacaaggaaggatgattgaatctttctcagaatgggaaacaaaatagatattggaggtcactagaaggagggaactgactggaaaagggtatgggaaggggaaaggggaggtaggggaggatcatatgtagggagagcaagggagaaagaagggagatcagcggtagaagtaggcaatttttaggacatgccagagacctgggatagggggaagccctagagagtctgatgagggtgactctagctgagactcctagcagcatggaatatggatcctgaagtggacactttcaaaagccaaacaggactcccagtggagggataaagacagcaactgtccacaaaaccttcgacccaaaatgtgccccgcctacaggatgtgcaaggacacagatggagcagagactgagggagtggccaccaatgactggcccaacgtgagacccatcccatgggcaagcactaatccttgatactattaatgatactctgttatgcttacaggcaagaagctagcataactgtgctctgagagactccacacagcaaccaatggaaagagatgtagagacccacatccaaacattggatagagcttgaggaatcttatggaagaactaagagaaggactgagggccccaaaggagatagaaactctgcaggaagaccaccagagtcaactgacctggactgttgggggctcccacggactgaaccatcaaccaaagagtgagcacaggctgaacttaggcccctgcacatatgtagtagatgaaaagcatgatcttcatagagatcccccaaaaactggagcaaaggctgtccttaagcctgttgcctggttgcctgtggacccagtgcccctaaacagatgccttgtctggactcagtgggagagaatgcacctagtcccccagtgactcgatatgtgtgggggagaggggacttatacccagaggaggtcttcctctcctcaaaaga---ggagaagatagaatgggatggggta---aggacttatgtgatggggtcctgagaagagaggaagagttgatactggtttgtaaagtcaataaactaaactaaaAAAAA i rn5.chr9 I 54 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12074054 52153 - 247518478 I e hg19.chr2 12189028 0 - 243199373 C e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=461.000000 s mm10.chr1_GL456221_random 94532 13 + 206961 AAGAAGAATCTCA s rn5.chr9 29242205 10 - 121549591 AAACAA---CTCT i rn5.chr9 C 0 C 0 s panTro4.chr2B 12126207 13 - 247518478 AAGAACAATCTCA i panTro4.chr2B I 52153 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e hg19.chr2 12189028 0 - 243199373 C e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=17112.000000 s mm10.chr1_GL456221_random 94545 61 + 206961 GTTTAGTAAATATGAGAGATAGGATAATAT-CCCACACTCCCCAAAA---TATGTCCTTTTTATA s rn5.chr9 29242215 59 - 121549591 GTTTAGTAAACATGAGATTCAGGA--ATAT-CCTACACTCCCCAAAA---TATATCCTTTTTCTA i rn5.chr9 C 0 C 0 s hg19.chr2 12189028 65 - 243199373 TTTTAGTAAATATAATAGGCAGAATAACATCCCCCCACTCCCACAAAGCTTATGGCTGTGTTATA i hg19.chr2 C 0 I 75 s panTro4.chr2B 12126220 64 - 247518478 TTTTAGTAAATATAATAGGCAGAATAACAT-CCCCCACTCCCACAAAGCTTATGGCTGTGTTATA i panTro4.chr2B C 0 I 485 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=37300.000000 s mm10.chr1_GL456221_random 94606 611 + 206961 ACAGTCAG-AACTTAGGATTTATGACTTTCTTTTGATTTCTTACTACAAAAAAA---GTCTTGAACTAGTAGGTGTTTGTTTGTTGGCTTGCTTGCTTTGGTAGTGCTTGAAGTCAAATCTAGGGCCCTAAGCATGCAAGGCAAGTCTATCTGTG-----TTCTCAGCTCATGAGCATGTTACATGGCTATGTCAGCTATGTTAGGATAATTACATTATTAAGATTGCAGATGGTATTAAGCTTGCTAGCAGGTTTATTTCTCGTTATATTAGGTTGGTTTCATCATAGCATCTTGATACCTATCCTAGCTTGTTGGGATAATATTTTT-TCACATTGTGTAATGGTGTGTCTCTGTGTTTTCAATTGTTAATTCTGTA-GGGCAAAGGACTAAATGCTGGGAGGA-ATTGGTTTTGTCATTTCTATGGCCCATCACCAGCCTTATGTTTGTAAATACTTGTCCTTCCACACCTGCTCAGATAGCTGAAGCTCAGACAGCTCTCTATACCTAGAGGCAATCTAGAAATGTACCAGAGA--TTGTCTTGATGctgattagtcccaataaagatctgacagccaatagtcagagaagaaaatggagggcagaacttgcaggcagaga s rn5.chr9 29242274 612 - 121549591 ATCATCAGGAACTTATGATTTATGACTTTCTTTTGTTTTCTTACTACAAAAAAAAAAGTCCTGAACTATTAAGGTTCTGTTTGTT----TGCTTGTTTTTGTAGTGCTTGAAGTTAAATCTATGGCCCTATGCATGCAAGGCAAGTCTATCAGTGACCTGTTCTCATCCCATGAGTATGTTA-ATGGGTATGTCGGTTATATTAGAATTACAACATTATTAAGATTGCAGGTGATATTAAGCTTGCTGGCAGGTTTCTTTTTCATTAT-------TAGTTTTATTATAGCATCTTAATAC-TCTCCTGGCTTGTTAGGATAATGTTTTCCTCACATTGTATAAAGGTGTGACTCTGTATTTTCCATTGTTAATTCTGTATGGGCAGAGGATTAAATGTTGGCAGGATATTTGTATTGTCATTTCTATGGCCGAACACCAGCCTTCTATGTGTAAATACTTGTCCTTCCACATCTTCTCAGATACTCAAAGTTCAGACAGCCATCTATGCCTAGAGGCAATCTAGAATTGCACCAGAGAttttctctcgaggctgattggttgtaataaagacccaacagtcaatagatggagaagaaaatggagggcacaacttgcaggCAGAGA i rn5.chr9 C 0 I 2238 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e hg19.chr2 12189093 75 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 95217 462 + 206961 atgatttaaggggagattcaagcagaggtgggagattcaagaaggacatggagggagcagagaaaggtatagagctagccatatggtgggtcactggctagttaggttaagtttagagtagccaggagactgtccaagtcaaaggcctgagctttcaactattatagaagcctccttgtcattatttATGCCGCCTAGCAAGTCCCCAtatactggccatttttacgtcaactttacacaagctcgaatcttcagagaggagaaaacctcatttgagaaaatgcctccataagatcaggctgcaggtaagtctgtagggtattttcttaattagtcattgaaactgaaaagcccagcccattgtaggtggtgccatccctggtctggtggttttgggttctacgagaaaacagactgagcaaagccaagaggagcaagccagaaagcagcacccctccatgc e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e hg19.chr2 12189093 75 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29242886 2238 - 121549591 I a score=14469.000000 s mm10.chr1_GL456221_random 95679 195 + 206961 cacctcccctgtatcctcatagcctttcttttccactacctctggtgggtggagggctagaagagggagttaaagtatttaagaacccattttaaaagtaaggttttgaaaaaaattctaagctacaCATTTGTGTGTTGGGTAGGAAAATTGGTGCTTACTCATTCTTTCTTACAGAACTCAGTCAGAGTTCAC s rn5.chr9 29245124 193 - 121549591 cacttcccctgtatcctcataacctttcttttccactgccgccagtgggtggagggctagaagggag-gttaaagcatttcagagcccatattaaaagtaaggttctgaaaaaaat-ctaagctacaCACTTGTGTGTTGGGTAGGAAAATTGGTGATTACTCAATCTCTCTTGTAGAACTCAATCAGAGTTCAC i rn5.chr9 I 2238 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e hg19.chr2 12189093 75 - 243199373 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=21.000000 s mm10.chr1_GL456221_random 95874 8 + 206961 -CTCTCTGG s rn5.chr9 29245317 8 - 121549591 -CTCTTTGG i rn5.chr9 C 0 T 1013 s hg19.chr2 12189168 8 - 243199373 CCCACCTG- i hg19.chr2 I 75 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=6681.000000 s mm10.chr1_GL456221_random 95882 55 + 206961 TGAGTCCTCCAGGGTTGGAA-----------------------GATGAGAAAAGACTGTCCGTAGCAAAGGCCAGTGT s rn5.chr9 29244312 55 - 121549591 TGAGTCCTCTAGGGTTAGGA-----------------------GGTAGGACGAGACTGTCTGTAACAAAGGCCAGTGT i rn5.chr9 T 1013 C 0 s hg19.chr2 12189176 78 - 243199373 TGACTCCTTCAGTGTTGGAACAGAGCTTGGAAGAACATGAAACGGGCAGGAAAGGCCATCCTTAACAAAGGCAGATGT i hg19.chr2 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=11564.000000 s mm10.chr1_GL456221_random 95937 318 + 206961 TTg-----tggagacttacggtttttcaggaaagtcagttatatcacaggatgttttcctgaaacagacatgggtgaaaggatgttttgctaaagcaagcacgtgaatggatgtttgatgaaggactctttactaaacgacacccatgtattggctcatctgacagtgtgttactgagctctgtttgttgtgactccattgacagaaatgcaccaaaaaacttc---tgcttcttgtcacttcctcaaactcaggctgatgggcatagtgatgtcatctgatacagactcacatggagttttgctaaaacagactcacatggtgag s rn5.chr9 29244367 244 - 121549591 TTGTGACCTGGAGATGTATGGTTTCTTAGGAAAGACAGTTA-----------------------------------------------------------AAAAgaatggatgtttgatgaaggattctttact-aacaacacccatgtactggctcacccgaca----------------------ttgtgacttcataaacagaaatgcacccaaaaatttctggtggttcttgctgcttcctcggatttgtgctgattggaagagtaatgtcagctgatacaaactcatgtggagttttgctaagacagactcatgtggtgag i rn5.chr9 C 0 I 239 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e hg19.chr2 12189254 0 - 243199373 C e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 96255 21 + 206961 tctcatctgtgtgaggacttg e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e hg19.chr2 12189254 0 - 243199373 C e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29244611 239 - 121549591 I a score=10103.000000 s mm10.chr1_GL456221_random 96276 148 + 206961 tgtttgctatcctgacaccactgagctggactgctagtatattcgtgaagtgttttcaagtggatggagcagcctctgctgattcctgtgaactgaactgctgagttcctgacaacgcagatgggatttgctccaaagaactatttct s rn5.chr9 29244850 146 - 121549591 tgtttgctaccccaacatcactgaactgaactgctggtatattcgtgaagtgttttcaaatggattgagctgctgctgctga--cctatgaactgaactgctgatttcctgacgttgcaaatgagatttattccaaagaacaatttct i rn5.chr9 I 239 I 119 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e hg19.chr2 12189254 0 - 243199373 C e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=8597.000000 s mm10.chr1_GL456221_random 96424 132 + 206961 aaacaggtccaactcccctgtattctcataacctttcttttccactacctctggtgggtggagggctagaagggggagttaaagtatttaagaacccattttaaaaataaggttttgaaaaaataaagtctG s rn5.chr9 29245115 127 - 121549591 aaacaggttcacttcccctgtatcctcataacctttcttttccactgccgccagtgggtggagggctagaagggag-gttaaagcatttcagagcccatattaaaagtaaggttctgaaaaaa----atcta i rn5.chr9 I 119 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e hg19.chr2 12189254 0 - 243199373 C e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=25344.000000 s mm10.chr1_GL456221_random 96556 270 + 206961 AGCTACACGTTTGTGTGT--TGGGTAGGA-AAATT---GGTGCTTACTGATTCTTTCTTACAGAA------------CTCAATCAGAGTTCACCTCTCTGG-----------ATGCTTGCCTCTGG-TAGATGGTTCTTACTCCACCTCAACCCTCTCCTTCAGCAGCGCCCTCTATAGTATCCTCCAAC--CTTTTATCAGAGAGCTCCTCACTTGGAGGCAGGAAGCCTTATGGCTCAGTCTTTTCCAATGTCCTCAAGGCCAGACCCG--TCATCACATGGTCCTCTTATCCCTTACGAAT s rn5.chr9 29245242 262 - 121549591 agctacaCACTTGTGTGT--TGGGTAGGA-AAATT---GGTGATTACTCAATCTCTCTTGTAGAA------------CTCAATCAGAGTTCACCTCTTTGG-----------ATCCTTGTCTCTGG-CAGATGTTTCT----CCGTCTCCAGCCTCTCCTTCAACTGTACCC-CTATAGTATCCTCCAAC--CTTTTATCTGAGACCCCCTTACTTTGAAGCAGGAAGCCTTATGACACAGTCTTTTCCAATGTCCTCAAGGCCAGAT-----TTATCACCTGGTCCTCCTATTCCTTAAGAAT i rn5.chr9 C 0 I 125 s hg19.chr2 12189254 286 - 243199373 AATATGACATTTGCATCTTCTGCGTAGGGCAGATTCCCAGCGGTGATTCTTTCTTTTCTATACCACACTGTGGGATCCTAGGTCTAAGTTATCCCCTTTGGACTCTTGGGAAATCCTTGTCTTTAGCCAGGTGCTTCTCACTCTATTTTCATCCTCTGCTAC-----------CAATAGTAACCTCCAGCCTCTTTCGGCTGAGGCCCCTTTCCTTTG--GCATGAAGCCCTTTGGACAGGTCGTTTCCAATAACC-CAAAGCCAGACCCTACTTGTAA----GTCCTCTTGGCTCACAAGAAC i hg19.chr2 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=1188.000000 s mm10.chr1_GL456221_random 96826 15 + 206961 ACTCTGGTG----------------------GTACAg s rn5.chr9 29245629 15 - 121549591 ACTCTGGTg----------------------gtgcag i rn5.chr9 I 125 C 0 s hg19.chr2 12189540 37 - 243199373 ACTCTGACATCCTCTCCCCACCTCCACCAATGTGCAG i hg19.chr2 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=12590.000000 s mm10.chr1_GL456221_random 96841 194 + 206961 gagagatacctcagtgattaagagcactggctattcttacagagaacccaggttcaattcccagcatctacagtacaac-------catatataactgcagtcctatgggatccaatgtcctctcctggtctcctgggttactgcacacacatgatgcatata--tgcatgcagcaaaa--tcacacactaaataataaaaataa s rn5.chr9 29245644 205 - 121549591 gagagatacctcagtggttaagagcactggctattcttacagagggcccaagttcaatctacagaatccacagtacaacttacaaccatctgtaactccagtccaaagggatctaacgccctctcctggtcccctgggttactgcacacacaagatacacatacatgcatgcaggcaaaacccacacacaaaacaacaaaaataa i rn5.chr9 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e hg19.chr2 12189577 0 - 243199373 C e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=112.000000 s mm10.chr1_GL456221_random 97035 12 + 206961 TTTTTAAAATAA s rn5.chr9 29245849 12 - 121549591 TTTTTTTAATAA i rn5.chr9 C 0 I 51 s hg19.chr2 12189577 4 - 243199373 -TTTT------- i hg19.chr2 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12845134 38445 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2856843 61399 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12126284 485 - 247518478 I e calJac3.chr6 11738978 52080 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=469704.000000 s mm10.chr1_GL456221_random 97047 437 + 206961 TTTCTCTCCACCAGTGTAAGTACATGTCATTACTTAGCTACCCAGCAGACATTCCCAGCCATA--ATCTTTGACCTTCTCAGAGG-AAAAGA--ATAA---TTCAGGTTTCTAACTGTGGTTTGAATT----TCTGAA-----------------------------------------ACATCTA------AATGGCCAGAATTCACTCAGTATTCTCTTACAAGGA----TAAAAATGTCAACTTTTTCCCTCTTG---CTTTTAAAGAGTTT--CCAAGTTTGGTCTGACTTCAGCCAGTGTCTGCTCCCAAG------CTAAACAGAGTCAGCAA--AGTCCCACACAATAGTGACATGGCTGCAGTTAGGGTAAATGGAACATGCATATGAGGTCTGGAATTTTTAGGTAAGTTGCATTTTCTTTCTTGAGTGACTTAATTTCTTAGGGATATTTGC-AGTC--CAACTTCTCTGACTATTTGTCC-AACTTCCCACGCTTTCTGTCTCATT s rn5.chr9 29245912 437 - 121549591 TTTCTCTCCCCCAGTGTAAGTTTATGCCATTGCTTGGCTGCCAGGCTGGCATTCCCAACCATA--GT---TGATCTTCTCAGAGG-AAAAGA--ATAA---TGCAAGTTTCTAAGTGTGGTTTGATTT----TCTGAA-----------------------------------------ACTTCTA------AATGGCCTGAGTTCATTCAATATTTTCTCACAAGGA----TAAAAATGTCGACTTTTTCCCCCCTGTCACTTTTAGAGAGCTT--CCAAGTTTGGTCTGACTTTAGTCAGCGTCTGCTCACACG------CTAAACAGAGGTCAACA--CTTCCCATGCAGTGGTGATGTGGCTACAACTGGGGTTAACAGACTGAGCATACAAGGT-TGGAATTTTTAGATAAATCGCATTTTTTTCCTTCAGTGACTTAATTTCTTGGGGCTATTTGCAAAGC--CAACTTCTCTGAATATTTGCCC-AACCTCCTACCCTTTCTGTCTCATT i rn5.chr9 I 51 C 0 s hg19.chr2 12189581 458 - 243199373 ---CTCTCCAC---TGCATATATATGTGTTTGTATGGCCATCAGGCAGGTAGTTCCAGAAACA--GACTTTGACCTTCTCAGAGG-AGAAAA--AAAAAGCTTAAAATCCATAAGCATGGCTGATTTTACAGTCTTGA-----------------------------------------ACTTCTTCTAAACAATGGCCTGAATTCATTCAACATTTTCTTATGATGAGTATTATGAACTACTACTTTTCTATTCTTG---CTTTTA-AGATTTTGCCCAAGTTTATTCTTAAAGTAGTCAATATGTGTTTATATAGCATATCTACGTAGAAGCCAGAATTAGTTTCATGCAGAAATAATGTGTTTGCAGTTATAGTAAATAAAATATTCATAAGAACTTAGAAATTTTGAGATAATTCACATTTTATCCTTAAAGCAATTTA--TTCTTAGAGCTTTATGA-AAGCTATATCTTCTCTGAACATTTGCCCAAACCTCCCACACTATCTGACTTTAA i hg19.chr2 C 0 I 7 s panTro4.chr2B 12126769 460 - 247518478 TTTCTCTCCAC---TGCATATATATGTGTTTGTATGGCCATCAGGCAGGTAGTTCCAGAAACA--GACTTTGACCTTCTCAGAGG-AGAAAA--AAAAAGCTTAAAATCCATAAGCATGGCTGATTTTACAGTCTTGA-----------------------------------------ACTTCTTCTAAACAATGGCCTGAATTCATTCAACATTTTCTTATGATGAGTGTTATGAACTACTACTTTTCTATTCTTG---CTTTTA-AGATTTTGCCCAAGTTTATTCTTAAATTAGTCAATATGTGTTTATATGGCATATCTACATAGAAGCCAGAAATAGTTTCATGCAGAAATAATGTGTTTGCAGTTATGGTAAATAAAATATTCATAAG-ACTTAGAAATTTTGAGATAATTCACATTTTATCCTTAAAGCAATTTA--TTCTTAGAGCTTTACGA-AAGCTATATCTTCTCTGAACATTTGCCCAAACCTCCCACACTATCTGACTTTAA i panTro4.chr2B I 485 I 7 s nomLeu2.GL397366 2918242 462 - 6458163 TTTCTCTCCAC---TGCATATATATGTCTTTGTATGGCCATCAGGCAGGTAGTTCCAGAAACA--GACTTTGACATTCTCAGAGGAAAAAAA--AAAAAGCTGAAAATCTGTAAGCATGGCTGATTTTACAGTCTTGA-----------------------------------------ACTTCTTCTAAACAATGGCCTGAATTCATTCTACATTTTCTTATGATGAGTGTTATGAACTACTACTTTTCTATTCTGG---CTTTTA-AGATTTTGCCCAAGTTTATTCTTAAATTAGTCAATATGTGTTTATATAGCATATCTACATAGAAGCCAGAAATAGTTTCATGCAGAAATAATGTGTTTGCAGTTATGGTAAATAAAATATTCATAAGAACTTGGAAATTTTGAGATAATTCACATTTTATCCTTAAAGCAATTTA--TTCTTAGAGCTTTATGA-AAGCTATATCTTCTCTGAACATTTGCCCAAACCTCCTACACTATCTGACTTTAA i nomLeu2.GL397366 I 61399 I 7 s rheMac3.chr12 12883579 498 - 106825570 tttctctccac---tgcATGTGTATGTCTTTGTATGGCCATCAGGCAGGTAGTTCCAGAAACA--GACTTTGAC---CTCAGAGG-aaaaaaatatatatattaaaatCCTTCGGCATGGCTGATTTTACAGTCTTGACTTCTTCTAAACAATGAAGCACGGCTGATGTTACAGTCTTGACTTCTTCTAAACAATGGGCTGAATTCATTCAACATTTTCTTATGATGAGTATTATGA---ACTACTTTTCTATTCTTG---CATTTA-AGATTTTGCCCAAGTTTATTCTCAAATTAGTCAATATGTGTTTATATAGCATATCTACATAGAAGCCAGAAATCGTTTCATGCAGAAATAATGTGGTTGTAGTTATGGTAAATAAAATATTCATAAGAACTTGGAAATTTTGAGATAATTCACATTTTATCCTTCAAGCAATTTA--TTCTTAGAACTTTATGA-AAGCTATATCTTCGCTGAACATTTGCCCAAACCTCCCACACTATCTGACTTTAA i rheMac3.chr12 I 38445 I 7 s calJac3.chr6 11791058 456 - 158406734 TTTCTCTCCAC---TGCATATCCGTGTCTT----TGGCCATCAGGCAGGTACTTCCACAAACATGGACTTTGACTTTCTCGGAGG--AATAT--AAAAAGCTTAAAATCCTTAAGCATGGCTGATTTTGCCGTCTTGT-----------------------------------------ACTT-GACTAAACAATGGCCTGAATCCATTCAACATTTTCTTAGGATGAGTGTTATGAACTACTACTTTTCTATGCTTG---CTTTTA-AGATTTTTGCC-TGTTTATTCTTAAATTAGTCCATATGTATTTATATAGCATATCTCCATAGAAGCCAGAAATAGTTTCATGCAGAAGTAATGTGGTTGCAGTTACGGTAAATAAAATATTCATAAGAACCTGGAAATTTTGAGATAATTCACATTTTATCCTTAAAGCAATTTA--TTCTTAGAGCTTTATGA-AAGCTATATCTTCTCTGAACATTTGCCCAAACCTCCCACCATTTCTGACttttt i calJac3.chr6 I 52080 I 6860 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e gorGor3.chr2B 12234800 60998 - 131632457 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=109476.000000 s mm10.chr1_GL456221_random 97484 136 + 206961 AACAGCACATCAT------GTGGGAAGGGTAGGTTT-------TATGGGGAACCCGGTTAGTTACAAGTGACTTTAATCACCACTTCCTCCC-TCTCCTT-CCTCTGTATCTTATCCA-AGCTTAAATTT----GGAGTATGAAGGATT-TCACACc s rn5.chr9 29246349 145 - 121549591 AACACCACATCAT------GTGGGAAGGGCAAAGGTACAGGGAACTCGGGAACTTGGTTAATTGCAAGTGACTTTAACCACCGCTTCCTCCCTTCTCCTTACTTCTGCATCTTACCCA-AACTTAAATTT----GGAGTGTAAAGGATt-ccctctc i rn5.chr9 C 0 C 0 s hg19.chr2 12190046 149 - 243199373 ATCATTGCACCAT-TCAATATGAGCAACGAACATTT-------TACAAGAACTCTCAACAATTGCAAGTAACTTTACCTACCACTTCCTCTCTTCCCTTCCCTTTTGTATCTTGCCCAGAGTTTAAGGTTCCCAGGGGTGCACAGGATTTTCACATC i hg19.chr2 I 7 I 868 s panTro4.chr2B 12127236 149 - 247518478 ATCATTGCACCAT-TCAATATGAGCAACGAACATTT-------TACAAGAACTCTCAACAATTGCAAGTAACTTTACCTACCACTTCCTCTCTTCCCTTCCCTTTTGTATCTTGCCCAAAGTTTAAGGTTCCCAGGGGTGCAAAGGATTTTCACATC i panTro4.chr2B I 7 I 858 s nomLeu2.GL397366 2918711 148 - 6458163 ATCATTGCACCAT-TCAATATGAGCAAAGAACATTT-------TACAAGAACTCTCAACAATTGCAAGTAACTTTACCTACCACTTCCTCTCTTCCCTTCCCTTTTGTATCTTGCCCA-AGTTTAAGGTTCCCAGGGGTGCAAAGGATTTTCACATC i nomLeu2.GL397366 I 7 I 849 s rheMac3.chr12 12884084 149 - 106825570 ATCATTGCACCATCTCAATATGAGCAAAGAACATTT-------TATAAGAACTCTCAACAATTGCAACTAACTCTACCTACCACTTCCTCTCTTCCCTTCCCTTTTGTATCTTGCCCA-AGCTTAAGGTTCCCAGGGGCACAAAGGATTGTCACATC i rheMac3.chr12 I 7 I 838 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e gorGor3.chr2B 12234800 60998 - 131632457 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=1390.000000 s mm10.chr1_GL456221_random 97620 33 + 206961 tctccctatccttcccccctccccctctccctc s rn5.chr9 29246494 30 - 121549591 tctctct---ctctctctctctctctctctctc i rn5.chr9 C 0 I 2194 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 97653 511 + 206961 cctcctttctcttttccccttctctgccttcctgtttgcatggcaatttccttggcctccttccttggggccaatgaacttgccaaggtaaacctgcccttttcaactcttaattcggtttgaattggcttattccatttatggagaaaacctattttttgaaactgtaaacaagccccaattaaatgttttcttttgtaagagttgccagggtcatagtgtctcctcatagcaatatagtactgactaatacaTTCACATACATGtacgtatgtatatgtccatgtatacatatatgaatgtatatgttcaaatacatttaaatacagtttgctgagtctttattgtttgtgtgtatatggtttcaagactgacctatttgTTTGTTTGTTTATTTTATTTTTTATTGAtttagcttttcaagacaggatttttctgtgtaaaaagccctggctgttctagaactcactttgtagaccaggttgacccagagatatacaggttgtctctg e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29246524 2194 - 121549591 I a score=9925.000000 s mm10.chr1_GL456221_random 98164 142 + 206961 tattataataatgctgatttctgaactggcagagatccagttacaggtgggactttgaaattgttaagcatctcctgtctcagtgttttgtaaatactccctctctcaccttctgattgtgttattaaaaagttgaccgaca s rn5.chr9 29248718 141 - 121549591 tattatataaatgctaatt-ctgaaccagcagagatccaattacaggtgggactttgaaattgttaagcatcacctgtcataacattttgtaaacactccctctctcaccttctgattgtattattaaaaaactgatggcca i rn5.chr9 I 2194 I 181 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 98306 195 + 206961 agagctggagaggtggaccagtgtttaagagcactgactactcttccagaagtcctgaattcaattcccagcaaccacatggtgactcccaactacctgtaatgggatctgatgccctcttctggtgtgtctgaagacagtgacagtgtactcatatacataaaataaataattctttttaaaaaaagaaaaagg e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29248859 181 - 121549591 I a score=4989.000000 s mm10.chr1_GL456221_random 98501 84 + 206961 aaaaaaagctagtggcctatagcaaaggcagaaagtagaaggaagaacttctcggaagagataagaactctgggagagagacaA s rn5.chr9 29249040 80 - 121549591 aaagtaaggtaatggcctatagcaaaggcaggaaggagaaagaggaactcctggaaagag----gaactctgggagagagtcag i rn5.chr9 I 181 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 98585 11220 + 206961 ctggccaccttcctggtgagagcacaggggtccgcccggcccgagaggtttctgcctcaggctccggcgggagccaccttggttccgggactccgcagagggcaggctgcatgggtgagggtgtggaatacagaggtcagcagtttctgggtcaggcgagagccacagagcttctgaggcggcgccatcttaagctccagacaaccggccaccttcctggccaaagcaacacagcttctgggaaagatcctgttttgggccttcatcttcggccaggaggaggtccaaacaccagataactgtgcactgaaagaggagagcttgcctgcagagactgctctgaccactgaaactttccctgaaagaggagagcttgcctgcagagactgctctgaccactgaaactcagatgagagagctagtctcccacgtctgctgctagagggtaacaaaatcaccagaggaacaatccctaaacaaagacaactataacaactaactccagaaattgccagatggcgaaaggtaaacataagaatcctactaacagaaaccaggaccactcaccatcatcagaacccagaacgcccacttcgcccagtccagggcaccctaacacacctgaaaaggtagacctggatttaagagcatatctcatgatgatggtagaggacataaagaaggaatttaataactcacttaaagaaatacaggagaacactgctaaagatttacaagtccttaaagaaaaacaggaaaacacaaccaaacaggtagaagcccttatagaaaaacaggaaaacacatccaaacaggtgatggaaatgaacaaaaccataatagaactaaaaagggaagtagacacaataaagaaaacccaaagtgaggcaacactgaagatagaaaccctaggaaagaaatctggaaccatagatgccagcatcagcaacagaatacaagagatggaagagagaatctcaggtgcagaagattccatagagaacatcggcacaacaatcaaagaaaatggaaaatgcaaaaagatcctaactcaaaacatacaggaaatccaggacacaatgagaagaccaaacctacggataataggagtggatgagaatgaagatttttcaactcaaaggaccagcaaacatcttcaacaaaattattgaagaaaacttcccaaatctaaagaaagagatgcccataaacatacaagaagcctacagaactccaaatagactggaacagaaaagaaattcctcctgacacataataatcagaacatcaaatgcactaaataaagatagaatactaaaagcagtaagggaaaatggtcaagtaacatataaatgcaagcctatcagaattacaccagatttttcaccagagactatgaaagccagaagagcctggacagatgttatacagacactaagagaacacaaattccagactaggctactatacccagccaaactctcaattaccatagatggagaaaccaaagtattccacgacaaaactaaattcacccattatctctcctcgaatccagcccttcaaagcataataacagaaaaaaaaaaaaaaaaacaatacaaggacaggaaccaagccctagaaaaaacaagaagataatccctcaacaaaagtaaaagttgacagccacatgaacaaaatgccaacttcaacaacaaaaataacaggaagcaacaattacttttccttaatatctcttaatatcaatggtctcacctccccaataaaaagacatagactaacaaactggctacacaaacaagacccaacattttgctgcttacaggaaactcatctcagagaaaaagatagacactacctcagaataaaaggctggaaaacaattttccaagcaaatggtatgaagaaacaagctggagtagccatcttaatatctgataagattgacttccaacccaaagtcatcaaaaaagacaaggaggggcacttcatactcatcaaaggtaaaattctccaagaggaactctcaattctgaatatctatgctccaaatacaagggcagccacattcattaaagaaactttagtaaagctcaaagcacacattgcacctcacacaataatagtgagagacttcaacacaccactttcaccaatggacagatcatggaaacagaaactaaacagggacacagtgaaactaacagaagtgatgaaacaaatggacttaacagaaatctacagaacattttatcctaaaacaaaaggatataccttcttctcagcacctcatggtaccttctctaaaattgaccacataattggtcacaaaacaagcctcaacatacacaaaaatattgaaattgtcccatgcatcctatcagatcaccatggactaaggctgatcttcaataacaaaataaataatagaaagccaacattcacatggaaactgaacaacactcttctcaatgataccttggtcaaggaaggaataaagaaagaaattaaggatttttggagtttaatgaaaatgaagccacaacattcccaaacttatgggacacaatgaaagcattcctaagaggaaaactcatagctctgagtgcctccaaaaagaaaatagagagagcacacattagcagcttgacagcacacctaaaaggttgagaagaaaaggaagcaaattctcccaagaggagtagaaggcaggaaataatcaaactcaggggtgaaatcaaccaagtggaaggaaacaagaactattcaaagaatcaaccaatcaaggagctgtttctttgagaaaatcaacaagatagataaacccttagccagactcactagagggcacagggaaagcatcctaattaacaaaatcagaaatgaaaagggagacataacaacagatcctgaagaaatccaaaacaccatcagatccttctacaaaaggctatactcaacaaaactggaaaacctgcatgagatggacaagtttctagacagatgccaggtaccaaagctaaatcaagatcgggttaatgatctcaacagtcctatatcccctagagaaatagaagcagtcattaatagtctcccagccaaaaaaagcccaggaccagacgggtttagtgcagagttctatcagaccttcaaagaagacccaattccagttcttcacaaactattccacaaaatagaaacggaaggtactctacccaactcattctatgaagccacaattactctgatacctaaaccacaaaaagacccaacaaagatagagaacttcagaccaatttcccttatgaatatcaatgcaaaaatcctcaataaagttcttgctagccgaatccaagaacacatcaaaacaatcatccatcctgaccaagtagttttcatcccagggatgcagggatggttcaatatacggaaatccatcaatgtaatccagtatataaacaaactcaaagacaaaaaccacatgatcgtctcattagatgctgagaaagcatttgacaaaatccaacatccattcatgataaaagtcttggaaagatcaggaattcaaggcccatacctaaacatgataaaagcaatctacagcaaaccaatagccaacatcaaagtaaatggtgagaagctggaagcaatcccactaaaatcagggacaagacaaggctgtccactctcgccctacctattcaacattgtacttgaagtcctagccagagcaattagacaacaaaaggagatcaaggggatacaaattgaaaaggaaaaagtcaaattatcactttttgtagatgatatgatagtatatataagtgaccctaaaaattccaccagagaactcctaagcctgataaacagcttcaataaagtagctggatataaaattaactcaaacaagtcaatggcctttctgtacacaaaggataaacaggctgagaaagaaattagggaaacaatacccttctcaatagtcacaaataatataaaataccttagcgttactctaactaaggaagtgaaaaatctgtatgataaaaacttcaagtctctaaagaaagaaattaaagaggatctcagaagatagaaagatctcccatgctcatggattggcaggatcaacattgtaaaaatggccatcttgccaaaagcaatctacagatttaatgcaatccccatcaaaattccaactcaattcttcaacgaattagaaagggcaatcggcagattcatctggaataacaaaaaatcgaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatcaccatgctggacctaaaactgtactacagagcaattgtgattaaaactgcatggtaatggtatagtgacagacaagtagaccaatggaacagaattgaagacccagagatgaatccacacacctatggtcacttgatctttgacaagggagctaaaaccatccagtggaaaaaagacagcattttcaacaaatggtgctggcacaactggcggttatcatgtagaagaatgcgaattgatccatttctatctccttgtactaaggtcaaatctaagtggattaaggaactccacataaaaccagagacactgaaacttatagaggagaaagtagggaaaagcctcgaagatatgggtacaggggaaaaattcctgaatagaacagcaatggcttgtgctgtaagatcaagaattgataaatgggacctcataaaattgcaaagcttctgcaaagcaaaagacaccgtcaataagacaaaaaggccaccaaaagattgggaaaggatctttacctatcccaaatcggataggggactaatatccaatatatataaagaactcaagaaggtggactccagaaaatcaaataaccccattaaaaaatggggctcagcgcaggccccaatccaatcgcgcggaacctgagactaaggtacatagggaagcagactgcccgggcctgacccgg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ggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcagatgctggcgtggatgtggagaaagaggtacactcctccattgttggtgggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctcagaaaattggacatagtactaccggaggatccagcaatacctctcctcggcatttatccagaagatgccccatctcgtaagaaggacacgtgctccactatgttcatagcagccttgtttataatagccagaagctggaaagaacccagatgcccctcaacagaggaatggatacagaaaatgtggtacatttacataatggaatactactcagctattaaaaaaatgaatttatgaaatacctaggcaaatggatggacctggagggtatcatcccgagtgaagtaacccaatcacaaaggaacttgcacaatatgtactcactgataagtggatattagcccagaaacttaggataccgaagatataagatacaacttgccaaacgcatgaaattcaagaagaacaaagaccaaagtgtggacactttaccctttcttagaaatgggaacaaaacacccatagaaggagttacagagacaaaatttggagctgtgatgaaaggatggaccatctagtgattgccatatgcagggatccatcccataatcagcttccaaatgctgacaccattgcacacactagcaagattttgctgaaaagacccagatatagctctctcttgtgagactatcccggggcctagcaaacacagaagtggatgatcacagtcagctattcgatggagctacacggcccccaatggaggagctagagaaattacccaaggagctaaagggaactgcaaccctataggtggaacaacaatatgaactaaccagtacccgggagctcttgtctttagctgcatatgtatcaaaagatggcctagttggccatcactgcaaagagaggcccattggacttgcaaactttatatgccccagtacaggggaacaccagggccaaaaagggggagtgggtgggtaggggattgggggggtgggtatgggggacctttgggatagcattgaaaatgtaaacgaggaaaatatctaatttaaaaaaaatgaccacaaaaaaaaaAgaactctgggagaga e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29249120 0 - 121549591 C a score=32804.000000 s mm10.chr1_GL456221_random 109805 631 + 206961 atcagggaggactcactagggagacac--aagaagaagcaggctgagactaagaaagaggggtaactaacaaactatgtggcagaacttagaatagaataaa--------taagttatgagccacctgggaacaagcctagctataaggcctaggcattcataataaatataagtctccatgtcattatttgggagttgatggttgcaaagaaaatccataaacaatttttaattatgtttaAAATAATTATAAgtgtgtgtaaatggatatgtgcacttgtgaatgtatggtgtccaggggatggcattgggtcctctagagctgcctaatgtgaatgttgggagttgaacccttggttcctctgcaagagtgatttgtatgtactcttaaactgctgagccatttctccagcccTGAAGGATTCTTTATTCTCTAGGTGTTTACTATATCAATGCAAAGAGCCTGGCTTT-GTGGTGCAAGAGTTTGCAGAAAGACGCCTCTTTCCAGTCTGTGGTTCTCT----------------AAAGTCTACGGGACTCTGAGTTAAAtactgctgagtactgctaaggactgctgagtactgctaagcactgctgagtactgctaagcattgctgagtactgctaagcactgctaagtGCT s rn5.chr9 29249120 591 - 121549591 atatgggaggatttaccagggagacacggaggaagaagcaggctgagactaagaaggagtggtaattaataagctatgtggcagacctcagaatcgaataaactggttaataagttaggaaccatttgggaacaggcctagctgtaaagcctaggcactcatagtaaatacacgtctccatgtcattatttgggagctgatggtcgcaaagaaaatccAGAAACAATTTTTAATTATGTTTA-------TATAAGTGTGTGTAAGTGGATATGGGTGCCTGTGAATATA---------GGCCCATGTATTGGGTCCTCTAGAGCTGCCTGATACgaa--------------cccatggctcctgtggaagtgca----gtgtgtacttctaaactgccgagcctttcctccagcccTAAAGGATTCTT----------------ACTGTGTCGGTGCAAAAGACCTGACTTTTGTTGTGCAGGAGTTTATAGAAAAGCACCTCTTTCCAGGTGATGGTTCTCTTTCATCATGAGTGCCTGAAGTCTACCAGGCACTGCATTAAAtactgctgagtactgctgagatctgctgagtactgctgagtactgctgagtgctgctgagtactgctgagtactgct----------------- i rn5.chr9 C 0 C 0 e pteVam1.scaffold_15734 14833 0 - 27100 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=442.000000 s mm10.chr1_GL456221_random 110436 6 + 206961 ACTAAG s pteVam1.scaffold_409 23450 6 - 380355 actgag i pteVam1.scaffold_409 n 0 I 117 e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29249711 0 - 121549591 C a score=3258.000000 s mm10.chr1_GL456221_random 110442 46 + 206961 CACCTGCTGCCTTAGGCAAAGGAAATAAGACCTAGAGCCTGCCCTT s rn5.chr9 29249711 38 - 121549591 --------gCCTTAGGCAAAGGAAATAAGATCTAGAGCCTGCCCTT i rn5.chr9 C 0 C 0 e pteVam1.scaffold_409 23456 117 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e equCab2.chr6 66930002 30704 - 84719076 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=8281.000000 s mm10.chr1_GL456221_random 110488 55 + 206961 AAAGACGTGATGAAGCTTTG-TTTCTTAGGATTGGGGTTGCAGGAAGAGGCAAACT- s rn5.chr9 29249749 55 - 121549591 GAAGAAATGGTGAAGCTTTG-ATTCTTAGGGTTGGGGTTGCAGGAAGAGGCAAACC- i rn5.chr9 C 0 C 0 s equCab2.chr6 66960706 57 - 84719076 AAAGAGAAGGTGGTGCTCTGAATTCTCAGAGTTGGGGTTGGAGGAAGAGGGAAGGCT i equCab2.chr6 I 30704 C 0 e pteVam1.scaffold_409 23456 117 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=546.000000 s mm10.chr1_GL456221_random 110543 1 + 206961 T s rn5.chr9 29249804 1 - 121549591 T i rn5.chr9 C 0 C 0 s equCab2.chr6 66960763 1 - 84719076 T i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_409 23573 1 - 380355 T i pteVam1.scaffold_409 I 117 I 3449 e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=6243.000000 s mm10.chr1_GL456221_random 110544 98 + 206961 AGTGTAAATACCTAGAGAAGAGACAAGCAACTGAGGACTGGGGCTGTAGTTCAGAATACCTGCTTAGCATGTACAAGTGCTCTATCTCTCAGTCTGA---G s rn5.chr9 29249805 101 - 121549591 AGTCTAAACACTTAGAGAAGAGACAAGCAACTGAGGACTGGGGGTGTAGTTCAGAATACCAGCTTAGCATGTACAAGTGCTCTGTCTCTCAAACTGAGAGG i rn5.chr9 C 0 C 0 s equCab2.chr6 66960764 38 - 84719076 AGACTCAACACCTAGAGAGGAGGCAAG-----AAGGACTTGAG---------------------------------------------------------- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12884233 838 - 106825570 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e nomLeu2.GL397366 2918859 849 - 6458163 I e gorGor3.chr2B 12234800 60998 - 131632457 I e panTro4.chr2B 12127385 858 - 247518478 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=3603.000000 s mm10.chr1_GL456221_random 110642 9 + 206961 --AGAAGATGG s rn5.chr9 29249906 9 - 121549591 --AGAAGATGG i rn5.chr9 C 0 C 0 s panTro4.chr2B 12128243 9 - 247518478 --AGAACACCT i panTro4.chr2B I 858 C 0 s gorGor3.chr2B 12295798 9 - 131632457 --AGAACACCT i gorGor3.chr2B I 60998 C 0 s nomLeu2.GL397366 2919708 9 - 6458163 --AGAACACCT i nomLeu2.GL397366 I 849 C 0 s rheMac3.chr12 12885071 9 - 106825570 --AGAACACCT i rheMac3.chr12 I 838 C 0 s equCab2.chr6 66960802 9 - 84719076 CCAAAATGG-- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e hg19.chr2 12190195 868 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=1911.000000 s mm10.chr1_GL456221_random 110651 1 + 206961 A s rn5.chr9 29249915 1 - 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 12191063 1 - 243199373 A i hg19.chr2 I 868 C 0 s panTro4.chr2B 12128252 1 - 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12295807 1 - 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2919717 1 - 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12885080 1 - 106825570 A i rheMac3.chr12 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66960811 0 - 84719076 C e tarSyr1.scaffold_28366 18138 1 - 22953 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_154545 5119 0 + 5121 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=132688.000000 s mm10.chr1_GL456221_random 110652 108 + 206961 -GGAGGAAGGAGGGGAACTTGGAACCATTGAAGAGTGTAGG-------------CAGGACACAGACACTCTAGCATCTGATAGGAAGG---------ATGGTCCAAGGACCATAGAATATGGTCAGAGTGA s rn5.chr9 29249916 108 - 121549591 -GGAGGGAAGAGGAGAACTTGAAACCACTGGAGAGTGTAGG-------------CAGGACACAGAAGCTCTAGAATCTGATGGTAAGG---------ATGGCCCAAGGACATTAGAATGTGGACAAAGTGA i rn5.chr9 C 0 C 0 s hg19.chr2 12191064 96 - 243199373 -GAGAGAAGCAAGAAAACTTGAAGTC-----AAAATGTAGT-------------AGAAAC-------CACTAGAGCCTGAAAACAAGG---------AAGGCCTGAGGACAGGAGAATGTAATCAAAACAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12128253 96 - 247518478 -GAGTGAAGCAAGAAAACTTGAAGTC-----AAAATGTAGT-------------AGAAAC-------CACTAGAGCCTGAAAACAAGG---------AAGGCCTGAGGACAGGAGAATGTAATCAAAACAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12295808 96 - 131632457 -GAGAGAAGCAAGAAAACTTGAAGTC-----AAAATGTAGT-------------AGAAAC-------CACTAGAGCCTGAAAACAAGG---------AAGGCCTGAGGACAGGAGAATGTAATCAAAACAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2919718 92 - 6458163 -GAGAGAAGCAAGAAAACTTGAAGTC-----AAAATGTAGT-------------AAAAAC-------CACTAGAGCCTGAAAAC-------------AAGGCCTGAGGACAGGAGAATGTAATCAAAACAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12885081 96 - 106825570 -GAGAGAAGCAAGAAAACTTGAAATC-----AAAATGTAGT-------------AGAAAC-------CACTAGAGCCTGAAAACAAGG---------AAGGCCTGAGGACAGGATAATGTAATCAAAACAG i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66960811 86 - 84719076 ---------------AGTCTAGACAC-----GATATG------------------GAAGC-------CACTAGAATCTGAAAACAAGGGGATGAGGTGGGGCCTAAGGATGGGACAGTGTATTCAAAGCAA i equCab2.chr6 C 0 C 0 s choHof1.scaffold_1541 11579 107 - 48313 GGAGAAAGGCAAGAAGAACTGGAGCC-----GAAATGGAGTCTGGACATGATAGAGAAGC-------AACTAGAATACAAAAAT--GG---------GAGGCCTGAGCATGGGAGGG-GTAGCCAAAGCAA i choHof1.scaffold_1541 n 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_28366 18138 1 - 22953 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=6318.000000 s mm10.chr1_GL456221_random 110760 2 + 206961 TG s rn5.chr9 29250024 2 - 121549591 TG i rn5.chr9 C 0 I 138 s hg19.chr2 12191160 2 - 243199373 TG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12128349 2 - 247518478 TG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12295904 2 - 131632457 TG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2919810 2 - 6458163 TG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12885177 2 - 106825570 TG i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_9369 14603 2 - 35067 TA i tarSyr1.scaffold_9369 n 1 C 0 s equCab2.chr6 66960897 2 - 84719076 TG i equCab2.chr6 C 0 C 0 s choHof1.scaffold_1541 11686 2 - 48313 CG i choHof1.scaffold_1541 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=221499.000000 s mm10.chr1_GL456221_random 110762 106 + 206961 GACAAGAA--AGAG--GATCTC-CTCCAT-ATCCCAGTGTCCAGACCC-AAAGCAAAGTGGAGAGTCAAGATCTGGCTTTCTCAAGTAATTG-GTTTGGCTCTTAAAAATGAAA s rn5.chr9 29250164 78 - 121549591 gaaaagaa--aGAG--GACTTC-CTCCAT-AGTCTGGTGTCCAGACCC-AAAGTAAAGTGATCA---------------------------G-GTTTTGCTCTT-CAAATGAAA i rn5.chr9 I 138 C 0 s hg19.chr2 12191162 105 - 243199373 --GGTGAA--AAAG--GCTTTC-TTCCATGATCCAGGTGTCCACACCC-AAAGCACAGTGGAGAATCGAGGCCTGAATCTCCCACGCAATTG-GCCCAACTCTCAACAGTGAGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12128351 105 - 247518478 --GGTGAA--AAAG--GCTTTC-TTCCATGATCCAGGTGTCTACACCC-AAAGCACAGTGGAGAATCGAGGCCTGAATCTCCCACGCAATTG-GCCCAACTCTCAACAGTGAGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12295906 105 - 131632457 --GGTGAA--AAAG--GCTTTC-TTCCATGATCCAGGTGTCCACACCC-AAAGCACAGTGGAGAATTGAGGCCTGAATCTCCCATGCAATTG-GCCCAACTCTCAACAGTGAGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2919812 105 - 6458163 --GGTGAA--AAAG--GCTTTC-TTCCATGATCCAGGCGTCCACACCC-AAAGCACAGTGGAGAATCGAGGCCTGAATCTCCCACGCAATTG-GCCCAACTCTCAACAGTGAGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12885179 105 - 106825570 --GGTGAA--AAAG--GCTTTC-TTCCATGATCCAGGTGTCCGCACCC-AAAACACAGTGGAGAATTGAGGCCTGAATTTCCCGCGCAATTG-GCCCAACTCTCAACAGTGAGG i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_9369 14605 110 - 35067 --GTCAAAACAAAT--GCTTTCTTTCCACTATCTGGGTGTCCACACCCAAAAGCAAAGTGGAGAATTGAGGCCTGAGTTTCCCAATCAATTGTTTCCAGCTCTCAACAGTGAGG i tarSyr1.scaffold_9369 C 0 C 0 s equCab2.chr6 66960899 107 - 84719076 --GGTGAA--AAAGAAGCTTTT-TTCCACAAGCCAAGTGTCCACACCC-GAAGCAAAGTAGAGAACTGAGGTCTGAATTTCCCAGGCAATTG-GCCCAGCTCTTAACGGTGATG i equCab2.chr6 C 0 C 0 s choHof1.scaffold_1541 11688 83 - 48313 -GTGGAAA--AAAG--GCTCTT-TTCCACAAACTGGGTGTCCACACCC-AGAGCAAAGTGGAG-----------------------CAATTG-CTCCTGCTCTCAGAAGTGATG i choHof1.scaffold_1541 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=10429.000000 s mm10.chr1_GL456221_random 110868 4 + 206961 AAGT s rn5.chr9 29250242 4 - 121549591 AGGT i rn5.chr9 C 0 C 0 s panTro4.chr2B 12128456 4 - 247518478 AAAT i panTro4.chr2B C 0 I 4309 s gorGor3.chr2B 12296011 4 - 131632457 AAAT i gorGor3.chr2B C 0 I 4301 s nomLeu2.GL397366 2919917 4 - 6458163 AAAT i nomLeu2.GL397366 C 0 I 4298 s rheMac3.chr12 12885284 4 - 106825570 AAAT i rheMac3.chr12 C 0 I 4315 s tarSyr1.scaffold_9369 14715 4 - 35067 AAAT i tarSyr1.scaffold_9369 C 0 n 0 s equCab2.chr6 66961006 4 - 84719076 AAAT i equCab2.chr6 C 0 I 2305 s choHof1.scaffold_1541 11771 4 - 48313 AAAT i choHof1.scaffold_1541 C 0 n 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e hg19.chr2 12191267 0 - 243199373 C e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=12921.000000 s mm10.chr1_GL456221_random 110872 177 + 206961 Tgagctggcaagatagctcagcaagtatagtatttgccttaaaagcctgatgaccacgtaaagaaagctacataaa--aggaagaccgaaccaagtcctaaaagttgtcctctggtctacacacacacacacacacacacacacacacacacacacacacacacacatacacacacaca s rn5.chr9 29250246 179 - 121549591 TgagctggcaaggtagctcagcaggtaaagtattcgccatgaaagcctaatgacctCATAAAGAAACCCAACTAAAAGAGGAAGACAGAACCACATCCTAAAAGTTATCCTCTGGCCTacacacacacacacacacacacacacacacacacacacacacacacacacacacacaAATA i rn5.chr9 C 0 I 1 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12885288 4315 - 106825570 I e equCab2.chr6 66961010 2305 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2919921 4298 - 6458163 I e gorGor3.chr2B 12296015 4301 - 131632457 I e panTro4.chr2B 12128460 4309 - 247518478 I e hg19.chr2 12191267 0 - 243199373 C e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=0.000000 s mm10.chr1_GL456221_random 111049 322 + 206961 caAATAATTTTCTTttttggtttgttttggtttggttttggttttgtgttttggGGTTTTTGGGGttttgtttttttatttttctctttatagccctggctggcctcgaactcagaaatctgcctgcctctgcctcctgagtgctgggattaaaggcgtgcaccaccatgcctggctaaacttcttaAATCTTACTTGATCACAgagtacactgtagctatcttcagacacactagaagagggcttcagaccccattacagatggttgtgaggcatgatgtggttgctgggatttgaactcagaacctttggaagagcagtc e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12885288 4315 - 106825570 I e equCab2.chr6 66961010 2305 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2919921 4298 - 6458163 I e gorGor3.chr2B 12296015 4301 - 131632457 I e panTro4.chr2B 12128460 4309 - 247518478 I e hg19.chr2 12191267 0 - 243199373 C e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29250425 1 - 121549591 I a score=51729.000000 s mm10.chr1_GL456221_random 111371 918 + 206961 TTCTtgaagtggaaacttctggtttctttggaaagtcagttgtgtcagatggtgttttgctggggcacacacatgaatgagcattttcttgaagtggacacaggtggaaggatgttttgctaaagcaagcatgtgaaaggatgcaggatgaatgatgttaagaaggacccaacagacaatagatgatgctggttggtattggtacgccttaccattgtttattggtcattgtttgtagggactccatagagatagacacatcaaag--------gtggtgtgcctgatgctttttgccacttctgcagactcgagccaattggcagaatgatggcagttgataca--------------------------gacgcacgtgctgaggcaagacacgtggtgaggtaagacccatggaga-cacgtgatgtttggagggagtatagataggactcaacagactgtgaggggggcttg-----cttgcatagctagctctgcaaagaaggcttcttggtcaccagtcttcagtgatcattgtttctttgagagaggcaaggcaaagaacttctgctgatgtccctggtagtcctggttcctcctgctgattcatgctgattcatctaagacctggatgtctctgctaggtcattccac---tgctgattcatgtttgctatcccaacactaccgattgatag----ttcgtgaagtgtttgcaaatggatcaagctgcaactgatgattcctgtaaat-gaactgctgatctcctgataacacaaatgggatttgctccaaagaacagtttctaaacaggtccactgcccccatatcctaacaactcttcttttctcctacctctggtgggtggtgg---gatagaaggaaggttaaagcatttaagaacccatattaaaagtaagatttgaaaaatctaaaactataAATTCTTTTTAATTTTTTAAGAT s rn5.chr9 29250426 885 - 121549591 TTATtgaagtggaaacttctgatttctttgcaaagtcagttgtgtcagatggtgttttgctggggcaaacacgtgaaggagtgttttcctgaagcagacacaggtgaaaggt---------------------------------------ataatgttaagaagaacccaacagacaatagatgaagctggatggtattggtacaccttgccattgtttattgatcactgtcca----gactccatagagaaaaacacaccagaaaacttctagtggtgtgctagaagcttcttgctacttctgtggactccagccaactggcagagtgatgtcagctgatacatactcatgtggatttttgctaagacagacgcacatgctgaggtaagatacatggtgaggcaagacccgtggagggcacataatgtttggagggagcataaataggactcaacagacagtgacgggggcttggcttgcttgcacagccagctttgcaa----cacttcttggtcttgagtcttcactgttcttagtttcattgaaagaggcacagcaaagaacttctcctggtgtctctggtagtcctggttcctccttctgacttgtgccaattcatctgaggactggctgtctctgctaggttatgccaccagtgctgggtcatgtttgttttcctgacactaccgactggtaggtagttcatgaagtgtttgcgaatggatcaagccgccgctgctgattcctgtgaattgaactgctgatttcctgacaacgtaaatgagatttgctccaaagaacaatttctaaacaagtccactgccctcgtatcccaataaccgttcttttccactatctctgatgggtggtggtgggctagaagggaggttaaa----ttaagaacccatattaaaagta---------------------------------tgatttTTTAAGAT i rn5.chr9 I 1 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12885288 4315 - 106825570 I e equCab2.chr6 66961010 2305 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2919921 4298 - 6458163 I e gorGor3.chr2B 12296015 4301 - 131632457 I e panTro4.chr2B 12128460 4309 - 247518478 I e hg19.chr2 12191267 0 - 243199373 C e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=21940.000000 s mm10.chr1_GL456221_random 112289 215 + 206961 AAGTGATTACTCTGTGCCAAAAAAATATGCAAAAAAAAAGTTATGAGAATTGCAAGATTTAAAGCCTCCCAGGCTCGTGTAAGTcttctctcaacccca-gtttttctcatttgtaaatcaagaacaat----------tacaaaattgttgtgaggatatgatgtagtgt-----aaatggcttgcatagtgTGGGGAATG----------TAATGCCTGCCATTGCTGATATCATTATA s rn5.chr9 29251311 220 - 121549591 AAGTGGTTATTCTGTACCAAAAAAATAC----AAAGAAAGTTATGAGAATTGTAAGATTTAGAGCCTCCTAAGCtcatgtaagtcttttctcaacccca-ctttttcccatttgtaaatcaagagcaat----------tgtaaaattgttgtgaggatttgttgtagtgt-----aaatggctt-cagagtgtggggaatgcaatgcccaataGTGCCTACCATCTCTGATATAATTATA i rn5.chr9 C 0 I 128 s hg19.chr2 12191267 213 - 243199373 AAATGATCACCTTGGGCC-AAGTAGTGTACAAGACAAATGTTAAAGGG-----AAGGCCCCGA-CCTCCTAGGTTTATGTAAGGCCATTGtaagcctcagctttttctcattttaaaatcagaaataatcatacctatatataaaattgttgtgaggatgtgacatattgtttataaaatagctcgcatcatgttagggttg-------------------ccgttgttg--ctcaataaa i hg19.chr2 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12885288 4315 - 106825570 I e equCab2.chr6 66961010 2305 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2919921 4298 - 6458163 I e gorGor3.chr2B 12296015 4301 - 131632457 I e panTro4.chr2B 12128460 4309 - 247518478 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=-575.000000 s mm10.chr1_GL456221_random 112504 37 + 206961 T-TAATCATATATCCTCGCTGAATCATTATTATACAGT s hg19.chr2 12191480 35 - 243199373 tgctatctgttgttTTTGCTG--CTGTTGTTGC-CTGT i hg19.chr2 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12885288 4315 - 106825570 I e equCab2.chr6 66961010 2305 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2919921 4298 - 6458163 I e gorGor3.chr2B 12296015 4301 - 131632457 I e panTro4.chr2B 12128460 4309 - 247518478 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I e rn5.chr9 29251531 128 - 121549591 I a score=44822.000000 s mm10.chr1_GL456221_random 112541 390 + 206961 AAATAAAACTATGTGTAGTAAGAGTGG--CCCATGGGTTGGCTCCt----tccaac-ccatgt----------gtgaggtaacttcccacactgccaaataagtaacactaagaactacatttcccagatgcctttgctttta-gggtctcattggacagttaggttccaccaattacaggcttctttatgacacacagaagatggaaggaggcagaagacattg---tgttgctgtttctcctaacaaacaaagttgtcaagatgtGAGTGTCCAATGCCTATAGCTACT-------CAGC--CCACGCAACCTCCACAGTCCATGGTTGCTG----GGTCTGTCTTTCACACCAATCAA----------TGGGGTCCCTGACTTCTGTTTCCTCTAGCCTTTCCAGTGACTTCATAGCCACGTGATTCCTGT s rn5.chr9 29251659 401 - 121549591 aaagaaaactaTGTGTAATAAGAGGGG--CCCTtgggttgctcattcagttctcac-tcattt----cccctagtaaggcaactttccacagtgccaaatcagtaacactaagaactacatttcccagactcctttgcttttaagggtcccagtaggcagttaggttccaccaattacaggcgaatatgtaacatacagacgttggaaggaggtagaagacatca---tgttgctgtttctcctgGCCGACAAAGTTGACAAGATGTGAGCGTCCAGTGCCTACAGCTACT-------TGGC--CCATGTGACCTCCACAGTCCATGGCTGCTG----GGTCTGTCCTTGATGCCAATCAG----------CAGGATCCCTGACTTCCGTTTCCTCTAGCCTATCCAGTGACTTCATAACCACGTGATTCCTGT i rn5.chr9 I 128 C 0 s hg19.chr2 12191515 423 - 243199373 AGGTAAAATTAAATGCAGTAAAggcagatcctatggattggctcat----tcaatcttcattttaccctccttttgtggtaacttccagcattgccaaatctatgaaactcagaactacatttccaagacttctttactttta-gagttctggatgccacttaggttctaccagttagaagcaatgatgtaagatttggaagatggaagggagtggaggccgtctccctctcactatttcttctggcaagcaaattcacaaaggcatgagtgtcaaggggcaggaggagctgtggtggtggcagctgcttaacctc--cagatcatgctggttgcagtggtttactcttgacatcaatcaggcatggggtttggggtccc-aatttca--ctccttcag-ctttctagggactttgtcagcatctgattcctgt i hg19.chr2 C 0 I 3640 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12885288 4315 - 106825570 I e equCab2.chr6 66961010 2305 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2919921 4298 - 6458163 I e gorGor3.chr2B 12296015 4301 - 131632457 I e panTro4.chr2B 12128460 4309 - 247518478 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=877.000000 s mm10.chr1_GL456221_random 112931 16 + 206961 TCTTTGTGCTATGGCT s rn5.chr9 29252060 16 - 121549591 ACTTTGTGCTTTGTCT i rn5.chr9 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12885288 4315 - 106825570 I e equCab2.chr6 66961010 2305 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2919921 4298 - 6458163 I e gorGor3.chr2B 12296015 4301 - 131632457 I e panTro4.chr2B 12128460 4309 - 247518478 I e hg19.chr2 12191938 3640 - 243199373 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=1694.000000 s mm10.chr1_GL456221_random 112947 1 + 206961 A s rn5.chr9 29252076 1 - 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 12195578 1 - 243199373 A i hg19.chr2 I 3640 C 0 s panTro4.chr2B 12132769 1 - 247518478 A i panTro4.chr2B I 4309 C 0 s gorGor3.chr2B 12300316 1 - 131632457 A i gorGor3.chr2B I 4301 C 0 s nomLeu2.GL397366 2924219 1 - 6458163 A i nomLeu2.GL397366 I 4298 C 0 s rheMac3.chr12 12889603 1 - 106825570 A i rheMac3.chr12 I 4315 C 0 s equCab2.chr6 66963315 1 - 84719076 A i equCab2.chr6 I 2305 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6331697 37531 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=27682.000000 s mm10.chr1_GL456221_random 112948 17 + 206961 CAGTAGATCAGGCCATC s rn5.chr9 29252077 13 - 121549591 CAGTAAGGCAGAC---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369228 17 + 10418462 CAGTGGGGCAGGCTGTG i speTri2.JH393335 I 37531 C 0 s hg19.chr2 12195579 17 - 243199373 CGGTAGAGCACACTGCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12132770 17 - 247518478 CAGTAGAGCACACTGCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12300317 17 - 131632457 CCGTAGAGCACACTGCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2924220 17 - 6458163 CAGTAGTGCACACTGCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889604 17 - 106825570 CAGTAGAGCACACTACT i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66963316 17 - 84719076 CAGTAAAGCATGCTGCC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e calJac3.chr6 11791514 6860 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=177618.000000 s mm10.chr1_GL456221_random 112965 72 + 206961 AGAAATGCTCATCTGGGTTTAGAGTTAAAAGCACT-AGCTCGTCTTAGTGAGGT----------------ACAGCAGAGAA-----------GTCTGCAG s rn5.chr9 29252090 64 - 121549591 --------TCATCTGGGTTTAGAGTTAAAGGCACT-AACTGATCTTACTGAGGC----------------ACAACAGAGAA-----------GTCTGCAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369245 100 + 10418462 AGAGATGTTGATCTCAGTTTAAAATTAAAGACACGAAGATGATTTCACAGGGGCCAGTTCAGTGTACGTGGCAGCAAAACATCATTTTGGTTGACTCAGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195596 86 - 243199373 AAAAACACTGGCCTGGGTTTAAAGTTAAAGACATTAAAAGGATTTCACTGAAGCCAATTCAGTGTAC---ACAGTAGTCAA-----------GTTTGTAA i hg19.chr2 C 0 I 30 s panTro4.chr2B 12132787 86 - 247518478 AAAAACACTGGCCTGGGTTTAAAGTTAAAGACATTAAAAGGATTTCACTGAAGCCAATTCAGTGTAC---ACAGTAGTCAA-----------GTTTGTAA i panTro4.chr2B C 0 I 30 s gorGor3.chr2B 12300334 86 - 131632457 AAAAACACTGGCCAGGGTCTGAAGTTAAAGACATTAAAAGGATTTCACTGAAGCCAATTCAGTGTAC---ACAGTAGTCAA-----------GTTTGTAA i gorGor3.chr2B C 0 I 30 s nomLeu2.GL397366 2924237 86 - 6458163 AAAAACACTGGCCTGGGTTTAAAGTTAAAGACATTAAAAGGATTTCACTGAGGTCAATTCAGCGTAC---ACAGTAGTCTA-----------GTTTGTAA i nomLeu2.GL397366 C 0 I 30 s rheMac3.chr12 12889621 86 - 106825570 AAAAACACTGGCCTGGGTTTAAAGTTAAAGGCATTAAAAGGATTTCACTGAGGCCAATTCAGTGTAC---ACAGTAGTCAA-----------GTTTGTAA i rheMac3.chr12 C 0 I 30 s calJac3.chr6 11798374 86 - 158406734 aaaaaCACTGGCCTGGGTTTCAAATTAAAGATATTAAAAAGATTTCACTGAGGCCAATACTGTGTAC---ATAGTAGTCAA-----------GTTTGTAA i calJac3.chr6 I 6860 I 30 s equCab2.chr6 66963333 85 - 84719076 AAAAATGCTGATCCGGGCTTAGGTACAAAGGCA-TAAAATGATTTCACTGAGGCCAGTCCAGCATAC---GCAACAGCCAA-----------GTTTGTAA i equCab2.chr6 C 0 I 30 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_3075 130961 739 - 176633 I a score=2818.000000 s mm10.chr1_GL456221_random 113037 1 + 206961 T s rn5.chr9 29252154 1 - 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369345 1 + 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195712 1 - 243199373 T i hg19.chr2 I 30 C 0 s panTro4.chr2B 12132903 1 - 247518478 T i panTro4.chr2B I 30 C 0 s gorGor3.chr2B 12300450 1 - 131632457 T i gorGor3.chr2B I 30 C 0 s nomLeu2.GL397366 2924353 1 - 6458163 T i nomLeu2.GL397366 I 30 C 0 s rheMac3.chr12 12889737 1 - 106825570 T i rheMac3.chr12 I 30 C 0 s calJac3.chr6 11798490 1 - 158406734 T i calJac3.chr6 I 30 C 0 s micMur1.scaffold_153902 629 1 + 953 T i micMur1.scaffold_153902 n 739 C 0 s equCab2.chr6 66963448 1 - 84719076 C i equCab2.chr6 I 30 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=6030.000000 s mm10.chr1_GL456221_random 113038 2 + 206961 GC s rn5.chr9 29252155 2 - 121549591 AC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369346 2 + 10418462 TC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195713 2 - 243199373 TC i hg19.chr2 C 0 C 0 s panTro4.chr2B 12132904 2 - 247518478 GC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12300451 2 - 131632457 GC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2924354 2 - 6458163 GC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889738 2 - 106825570 GC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798491 2 - 158406734 GC i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 630 2 + 953 GC i micMur1.scaffold_153902 C 0 C 0 s equCab2.chr6 66963449 2 - 84719076 AC i equCab2.chr6 C 0 C 0 s eriEur1.scaffold_109601 537 1 - 1149 -C i eriEur1.scaffold_109601 N 0 I 40 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=33425.000000 s mm10.chr1_GL456221_random 113040 8 + 206961 TCTCAAAA s rn5.chr9 29252157 8 - 121549591 TTTCAAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369348 8 + 10418462 TTCCGTAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195715 8 - 243199373 TTTCAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12132906 8 - 247518478 TTTCAAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12300453 8 - 131632457 TTTCAAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2924356 8 - 6458163 TTTCAAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889740 8 - 106825570 TTTCAAAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798493 8 - 158406734 TTTCAAAA i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 632 8 + 953 TTTTAAAA i micMur1.scaffold_153902 C 0 C 0 s equCab2.chr6 66963451 8 - 84719076 TTTCAAAA i equCab2.chr6 C 0 C 0 e eriEur1.scaffold_109601 538 40 - 1149 I e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=3575.000000 s mm10.chr1_GL456221_random 113048 1 + 206961 C s rn5.chr9 29252165 1 - 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369356 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195723 1 - 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 12132914 1 - 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12300461 1 - 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2924364 1 - 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889748 1 - 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798501 1 - 158406734 T i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 640 1 + 953 T i micMur1.scaffold_153902 C 0 C 0 s equCab2.chr6 66963459 1 - 84719076 T i equCab2.chr6 C 0 C 0 s eriEur1.scaffold_109601 578 1 - 1149 T i eriEur1.scaffold_109601 I 40 N 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=382950.000000 s mm10.chr1_GL456221_random 113049 149 + 206961 CAAATCAAGGCAACAGTTTACA--------CAGATCAAGTCCCCAGCCCTAGCTAGCACACCCATTAAGTCTGGAGTTATTC---C-AAAGAGCTGAA--TTTTTGTTTAAGCCAGCCC----CTTCTTTTTTAAGGCAGCAGCTTCT-TC-------------CGACAGCACAGCCAAGG s rn5.chr9 29252166 151 - 121549591 CAAATCAAGGCAACGGTTTTGAGT----T-TAATATAAGTCCCCAGTCCTAACTAACACACCCATTAAGCCTGGAGTTACTC---C-GAAGAGCTGAA--TTTTTGTTTAAGCCAGCCC----CTCCTTTTT-AAGCCAGCAGCTTCT-TC-------------TGGCAGCATAGCCAAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369357 162 + 10418462 CAAATAAAGATACCCATTTGGGGTTGAGT-CAAAGGCAGGTCCTGGCCCTTGCTGATGTGTCTCTCAGCATTGGAGTTATCCATTC-AAAGTGGAGGA--GTTTTG-TTAGACCGGCCCTCTGCTGCTCCTC-GTGTGACCAGAGCCCAGG-------------CGACAGCACACCTCGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195724 165 - 243199373 CAAATGAAGGCACCAATTTTAGGTTGAGTGAAAGACAGGTCCTCAGCCTTAGCTGATGAGACCATTAGGACTAGAGTTATTGATTC-AAATGGCTGAG-TTTTTTTTCTAAACTAGCCCTCTGCTGTTGACA-GTGTGACCACACCATAGC-------------TGACAACACATCCAATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12132915 165 - 247518478 CAAATGAAGGCACCAATTTTAGGTTGAGTGAAAGACAGGTCCTCAGCCTTAGCTGATGAGACCATTAGGACTAGAGTTATTGATTC-AAATGGCTGAG-TTTTTTTTCTAAACTAGCCCTCTGCTGTTGACA-GTGTGACCACACCATAGC-------------TGACAATACATCCAATG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12300462 165 - 131632457 CAAATGAAGGCACCAATTTTAGGTTGAGTGAAAGGCAGGCCCTCAGCCTTAGCTGATGAGACCATTAGGACTAGAGTTATTGATTC-AAATGGCTGAG-TTTTTTTTCTAAACTAGCCCTCTGCTGTTGACA-GTGTGACCACACCGTAGC-------------TGACAACACATCCAATG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2924365 166 - 6458163 CAAATGAAGGCACCAATTTTAGGTTGAGTGAAAGATAGGTCCTCAGCCTTAGCTGATGAGACCATTAGGACTAGAGTTATTGATTC-AAATGGCTGAGTTTTTTTTTCTAAACTAGCCCTCCGCTGTTGAAA-GTGTGACCACACCATAGC-------------TGACAACACATCCAATG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889749 164 - 106825570 CAAATGAAGGCACCAATTTTAGGTTGAGTGAAAGACAGGACCTCAGCCTTAGCTGATGAAACCATTAGGACTAAAGTTATTGATTC-AAATGGCTGAG--TTTTTTTCTAAACTGGCCCTCTGCTGTTCGCA-GTGTGACCGCACCATAAC-------------TGAAAACACATCCAGTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798502 175 - 158406734 CAAACGAAGGCACCAAATTTAGTTTGAGTGAAAGACAAGCCCTCAGCCTTAGCTGATGAGACCATCAGGACTAGAGTTATTGATTC--AATGGCTGAG---CTTTTTCTAAACTGGCCCTCGGCTGTTCACA-GTGTAACCACGCCACAGCTGTGACGGGGATGTGACAGCACATCCAGTG i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 641 159 + 953 CAAATCAAGGCTCCAATTTTAGGTTAAGTGAAAGGCAAGTCCTTACTCTCAGCTGATGAATCTAACAGGACTGGCATTGCTGATTCAAAACGGCTGAG--CTTCTGTTTAAA------CCCCGCTATTCCCA-GTGTGGCCACCCCACCGC-------------TGGCGGCACACCCAGTG i micMur1.scaffold_153902 C 0 C 0 s equCab2.chr6 66963460 164 - 84719076 CAAATCAAGACTCCCATTTTAGCTTGAGTAAAAGGCAAGTCCTCAACCCTAGCTGATG-GTTCATTAGGGCTAGAGTTATAGATTCAAAATGGCTGGG--TTTTTGTTTAAACTGGACCTCTGCTGTTGGTC-ACGTGACCACACCACAGC-------------CGACAGCACACCCAATG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=10190.000000 s mm10.chr1_GL456221_random 113198 2 + 206961 GT s rn5.chr9 29252317 2 - 121549591 GT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369519 2 + 10418462 GT i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195889 2 - 243199373 GT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12133080 2 - 247518478 GT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12300627 2 - 131632457 GT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2924531 2 - 6458163 GT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889913 2 - 106825570 GT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798677 2 - 158406734 GT i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 800 2 + 953 GT i micMur1.scaffold_153902 C 0 C 0 s equCab2.chr6 66963624 2 - 84719076 GT i equCab2.chr6 C 0 C 0 s taeGut1.chr9 15748238 2 - 27241186 GA i taeGut1.chr9 N 0 C 0 s chrPic1.JH584458 253101 2 - 14514158 GA i chrPic1.JH584458 N 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=2677.000000 s mm10.chr1_GL456221_random 113200 1 + 206961 A s rn5.chr9 29252319 1 - 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369521 1 + 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195891 1 - 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 12133082 1 - 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12300629 1 - 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2924533 1 - 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889915 1 - 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798679 1 - 158406734 G i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 802 1 + 953 G i micMur1.scaffold_153902 C 0 C 0 s equCab2.chr6 66963626 1 - 84719076 A i equCab2.chr6 C 0 C 0 s taeGut1.chr9 15748240 1 - 27241186 A i taeGut1.chr9 C 0 C 0 s anoCar2.chr3 22341316 1 + 204416410 A i anoCar2.chr3 N 0 C 0 s chrPic1.JH584458 253103 1 - 14514158 A i chrPic1.JH584458 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=18102.000000 s mm10.chr1_GL456221_random 113201 4 + 206961 CAGT s rn5.chr9 29252320 4 - 121549591 CAGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369522 4 + 10418462 CAAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195892 4 - 243199373 TAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 12133083 4 - 247518478 TAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12300630 4 - 131632457 TAAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2924534 4 - 6458163 TAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889916 4 - 106825570 TAAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798680 4 - 158406734 TAAT i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 803 4 + 953 CAGT i micMur1.scaffold_153902 C 0 C 0 s equCab2.chr6 66963627 4 - 84719076 TAAC i equCab2.chr6 C 0 C 0 s taeGut1.chr9 15748241 4 - 27241186 TAGC i taeGut1.chr9 C 0 C 0 s anoCar2.chr3 22341317 4 + 204416410 CATT i anoCar2.chr3 C 0 C 0 s chrPic1.JH584458 253104 4 - 14514158 TAGC i chrPic1.JH584458 C 0 C 0 s xenTro3.GL172691 340847 4 + 3659903 CAAT i xenTro3.GL172691 N 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=4005.000000 s mm10.chr1_GL456221_random 113205 1 + 206961 T s rn5.chr9 29252324 1 - 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369526 1 + 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195896 1 - 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 12133087 1 - 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12300634 1 - 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2924538 1 - 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889920 1 - 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798684 1 - 158406734 C i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 807 1 + 953 C i micMur1.scaffold_153902 C 0 C 0 s equCab2.chr6 66963631 1 - 84719076 C i equCab2.chr6 C 0 C 0 s taeGut1.chr9 15748245 1 - 27241186 T i taeGut1.chr9 C 0 C 0 s melUnd1.JH556581 3415814 1 + 8155271 T i melUnd1.JH556581 N 0 C 0 s anoCar2.chr3 22341321 1 + 204416410 T i anoCar2.chr3 C 0 C 0 s chrPic1.JH584458 253108 1 - 14514158 T i chrPic1.JH584458 C 0 C 0 s xenTro3.GL172691 340851 1 + 3659903 T i xenTro3.GL172691 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=19260.000000 s mm10.chr1_GL456221_random 113206 2 + 206961 TG s rn5.chr9 29252325 2 - 121549591 TG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369527 2 + 10418462 TG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195897 2 - 243199373 TG i hg19.chr2 C 0 C 0 s panTro4.chr2B 12133088 2 - 247518478 TG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12300635 2 - 131632457 TG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2924539 2 - 6458163 TG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889921 2 - 106825570 TG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798685 2 - 158406734 TG i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 808 2 + 953 TT i micMur1.scaffold_153902 C 0 C 0 s equCab2.chr6 66963632 2 - 84719076 TG i equCab2.chr6 C 0 C 0 s galGal4.chr9 13787549 2 - 23441680 TG i galGal4.chr9 N 0 C 0 s taeGut1.chr9 15748246 2 - 27241186 TG i taeGut1.chr9 C 0 C 0 s melUnd1.JH556581 3415815 2 + 8155271 TG i melUnd1.JH556581 C 0 C 0 s anoCar2.chr3 22341322 2 + 204416410 TG i anoCar2.chr3 C 0 C 0 s chrPic1.JH584458 253109 2 - 14514158 TG i chrPic1.JH584458 C 0 C 0 s xenTro3.GL172691 340852 2 + 3659903 TC i xenTro3.GL172691 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=432681.000000 s mm10.chr1_GL456221_random 113208 53 + 206961 CTCTGCAGATCTCTGTTGTGGAGCCCATAGACCAAAGGGTTGAAACACTGTGC s rn5.chr9 29252327 53 - 121549591 CTCCGCAGGTCTCTGTTGTGGAGCCCGTAGACCAGAGGGTTGAAACATTGCGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369529 53 + 10418462 CTCCGCAGCTCTGTGTTCTGAAGCCCGTAGACCAGCGGGTTAAAACACTGGGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195899 53 - 243199373 CTTTGCAGCTCTTTATTCCAGAGCCCATAGATCAGAGGATTAAAACACTGGGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 12133090 53 - 247518478 CTTTGCAGCTCTTTATTCCAGAGCCCATAGATCAGAGGATTAAAACACTGGGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 12300637 53 - 131632457 CTTTGCAGCTCTTTATTCCAGAGCCCATAGATCAGAGGATTAAAACACTGGGC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 2924541 53 - 6458163 CTTTGCAGCTCTTTATTCCAGAGCCCATAGATCAGAGGATTAAAACACTGGGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889923 53 - 106825570 CTTTGCAGCTCTTTATTCCAGAGCCCATAGATCAGAGGGTTAAAACACTGGGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798687 51 - 158406734 CTTTGAAGCTC--TATTCCAGAGCCCATAGATCAGAGGGCTAAAACACTGGGC i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 810 53 + 953 CGCTGCAGCTCCTTATTCCAGAGCCCGTAGATCAGAGGGTTAAAGCACTGAGC i micMur1.scaffold_153902 C 0 C 0 s equCab2.chr6 66963634 53 - 84719076 CTTTGCAGCTCTCTGTTCCAGAGCCCATAGATCAGAGGGTTAAAACACTGGGC i equCab2.chr6 C 0 C 0 s melGal1.chr11 14294311 53 - 24221871 CTTTGCAGATCTTTGTTTTGCAGACCATAAACCACAAAGCTGAAGCATTGTGC i melGal1.chr11 N 0 C 0 s galGal4.chr9 13787551 53 - 23441680 GTTTGCAGATCTTTGTTTTGCAGACCATaaaccacaaaactgaagcattgtgc i galGal4.chr9 C 0 C 0 s taeGut1.chr9 15748248 51 - 27241186 GTTTGCAGCTCTTTGTTTCACTGACCATAAACCACAGGGTTAAAACA--GTGC i taeGut1.chr9 C 0 C 0 s melUnd1.JH556581 3415817 53 + 8155271 GTTTGcagctctttgttttgctgacCATAAACCACAGGGTTAAAGTACAGAGC i melUnd1.JH556581 C 0 C 0 s anoCar2.chr3 22341324 53 + 204416410 TCCTTCAGTTCTTTGTTACGCAGCCCATAAACTATAGGGCTGAAGCTTTGTGC i anoCar2.chr3 C 0 C 0 s chrPic1.JH584458 253111 53 - 14514158 GTTTGCAGTTCTTTGTTTCGCAGACCATAAACCACAGGACTAAAGCACTGGGC i chrPic1.JH584458 C 0 C 0 s xenTro3.GL172691 340854 53 + 3659903 TGCCTCAGTTCAGTGCAACGTAGACCATATACAACAGGGCTGAGGCACTGTGC i xenTro3.GL172691 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=301006.000000 s mm10.chr1_GL456221_random 113261 81 + 206961 AAAAGCAAAGATACCAAAAAG-GGCCAGATTTAGAGCAAAGAAAAAC-ACCCCACACCGCTTTCCCAAACCTATGATTATCAG s rn5.chr9 29252380 81 - 121549591 AAAAGCGAAGATACCAAAAAG-CACCAGATTTAAAGCAAAGAAAAAC-ACCCCGCACCGTTTTCCCAAACCTACAAAGATCAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369582 81 + 10418462 AAATGCAAAGACACCAAAAAG-CACCAGATTTAGAGCAAAGAAAGAC-ACCCCACACCTCTTGCCTAAACCCAAGATGATCAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 12195952 81 - 243199373 AAATGCAAAAATGCCAAAACC-CACCAGATTTAAAGCAAAGAAAAAT-ACCCCACACACTTTCCCCAAACCTATGAATATCAG i hg19.chr2 C 0 n 0 s panTro4.chr2B 12133143 81 - 247518478 AAATGCAAAAATGCCAAAACC-CACCAGATTTAAAGCAAAGAAAAAT-ACCCCACACACTTTCCCCAAACCTATGAATATCAG i panTro4.chr2B C 0 n 0 s gorGor3.chr2B 12300690 81 - 131632457 AAATGCAAAAACGCCAAAACC-CACCAGATTTAAAGCAAAGAAAAAT-ACCCCACACACTTTCCCCAAACCTATGAATATCAG i gorGor3.chr2B C 0 n 0 s nomLeu2.GL397366 2924594 81 - 6458163 AAATGTAAAAACGCCAAAAAC-CACAAGATTTAAAGCAAAGAAAAAT-ACCCCACACACCTTCCCCAAACCTATGAATATCAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12889976 81 - 106825570 AAATGCAAAAACGCCAAAAAC-CACCAGATTCAAAGCAAAGAAAAAT-ACCCCACACACCTTCCCCAAACCTATGAATATCAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798738 81 - 158406734 AAATGCAAAAGCACCAAAACC-CACCAGATTTCAAGCAAAGGAAAAC-ACCCTGCACACCTTCCCCAAACCTATGAATCTCAG i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 863 82 + 953 AAAGGCAAAGACGCCGAAAAG-CACCAGATTTAAGGCAAAGTAAAACAACCCCGCACAGCTTCCCCAAACCTATGAATACGAG i micMur1.scaffold_153902 C 0 C 0 s equCab2.chr6 66963687 81 - 84719076 AAAGGCAAAGACTCCAAAGAG-CACCAGATTTAAAGCAAAGAAAAAC-ACTCCGCACATCTTTCCCAAACCTATGAATAACAG i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 6006 80 - 7669 AAATGCAAAGATGGCAAAAAG-CACCAGATTTAATGAAAAGAACAAG-ACCCCACACATCTTCCCCAAA-CTATGAACAGCAG i proCap1.scaffold_93620 N 0 C 0 s melGal1.chr11 14294364 76 - 24221871 AAACAACAGAACAAAAAAAGGCTGATAAATTTAAAATAGTG-------TTACCAGGATATCTTCTGACAGCTATTTTTATAAA i melGal1.chr11 C 0 C 0 s galGal4.chr9 13787604 73 - 23441680 aaacaacagaacaacaacaaccacaaaaatttaaaacaGTA-------TTATCAGGATGTCTTCCGACAGCTA---TCACAAA i galGal4.chr9 C 0 C 0 s taeGut1.chr9 15748299 65 - 27241186 AAATAACGAAGTAAGAAGGGC--------TGTAAAATAGTG-------CTTTCATGATGTCTTCCAATAGGTG---TTATAAG i taeGut1.chr9 C 0 C 0 s melUnd1.JH556581 3415870 72 + 8155271 AAACAACTAAACAAGAAAGGC-TGCTACATGTAAAATATTG-------TTATCAGGGTGTCTTCCAACAGCTG---TTATCAG i melUnd1.JH556581 C 0 C 0 s anoCar2.chr3 22341377 75 + 204416410 AAAgcagaaaacaacaaaagc-acCAAATcttatgtttgtg-------tgttttgcttCTTTTCCAATAGCTGTGATGATTAA i anoCar2.chr3 C 0 C 0 s chrPic1.JH584458 253164 69 - 14514158 AAGTGAGAAAACAACAAAAgc-tgttaaattaaaaataaaa-------tt------ggatcTTTTAACAGCGATTTTTATCAA i chrPic1.JH584458 C 0 C 0 s xenTro3.GL172691 340907 75 + 3659903 GAATGAAAAAATAATGAAATT-GGCAAGATCAAAAATAATG-------TACTGAGTTTTTCCACCTACCCAGATGGTCACTAA i xenTro3.GL172691 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=31139.000000 s mm10.chr1_GL456221_random 113342 8 + 206961 GGTAGGTA s rn5.chr9 29252461 8 - 121549591 GGTGGGTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369663 8 + 10418462 GGTTGGCA i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2924675 8 - 6458163 GGTTGGTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890057 8 - 106825570 GGGTGGTA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798819 8 - 158406734 AGTCGGTA i calJac3.chr6 C 0 C 0 s micMur1.scaffold_153902 945 8 + 953 AGTTGGTA i micMur1.scaffold_153902 C 0 n 0 s equCab2.chr6 66963768 8 - 84719076 GGTTGGTA i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 6086 8 - 7669 GGTAGGTA i proCap1.scaffold_93620 C 0 C 0 s melGal1.chr11 14294440 8 - 24221871 AAGTAGTA i melGal1.chr11 C 0 C 0 s galGal4.chr9 13787677 8 - 23441680 AAGTAGTA i galGal4.chr9 C 0 C 0 s taeGut1.chr9 15748364 8 - 27241186 AAGTAGCA i taeGut1.chr9 C 0 C 0 s melUnd1.JH556581 3415942 8 + 8155271 AAGTAGCA i melUnd1.JH556581 C 0 C 0 s anoCar2.chr3 22341452 8 + 204416410 AGGGGGAA i anoCar2.chr3 C 0 C 0 s chrPic1.JH584458 253233 8 - 14514158 AGGTGGAA i chrPic1.JH584458 C 0 C 0 s xenTro3.GL172691 340982 8 + 3659903 CGTAGGCA i xenTro3.GL172691 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I a score=580152.000000 s mm10.chr1_GL456221_random 113350 185 + 206961 TCACATGTAAGCTTATCTGCAGTAGATGAACAAGGACAGTTCTCCGGGCCTTGATGTTTGACTTGTTAAAATGGCCAGCCTGCTTCCCTTCTCGGT-ATATCAGACAGTAACTCACAAGAATGACAGATAAAAGAAAGGCAAGGGAAAACATGCCAATGACTCTGGCAGGCATACCATTC---------------------AAAATC s rn5.chr9 29252469 185 - 121549591 TCACGTGTAAGCTTATCTGCAGTAGATGAACAAGGACAGTTCTCCGGGCCTTGACGTTTGACCTGTTAAAATGGCCAGCCCGCTTCCCTTCTCGGT-ATATCAGGCAGTAACTCACAAGAATGACGGATAAAGGAAAGGCGAGGGAAAACATGCCGATGACTCTGGCAGGCGTCCCATTC---------------------AAAATC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369671 185 + 10418462 ATACGTGTAAACTTATCTGCACTAAATGAATAAGAACTGTTTTCCTCGCTTTGAGGTTGGACCTGTTAAAATGGCCGGCTCGTTTCCCTTCTCGAT-AGATCAGAGAGTAACTTAGAAGAATGACAGATAAAGGAAGGAACAGGAAAACCAAGCCCATGGCTCTGGCAGGAATGCTATTC---------------------AAGGTC i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2924683 185 - 6458163 TGATATGTAAGCTTATCTGCACTAAATGAATAAGGACTGTTTTCCTTGCTTTGATATTTGGCCTATTAAAATGGCCAGCCCGTTTTCCTTTGTGGT-ATATCAGAGAGTAGCTTATAAGAATGACAGACAAAAGAAGGAAAATACAAACCATGCCAGTGGCCCTGACAGGAGTGCCATTC---------------------AAGATC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890065 185 - 106825570 TGATATGTAAGCTTATCTGCACTAAATGAATAAGGACTGTTTTCCTTGCTTTGATATTTGACCTATTAAAATGGCCAGCCCGTTTCCCTTTGTGGT-ATATCAGAGAGTAGCTTATAAGAATGACAGACAAAAGAAGGAAAATAAAAACCATGCCAGTGGCCCTGGCAGGAGTGCCGTTG---------------------AAGATC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11798827 185 - 158406734 TGATATGTAAGCTTATCTGCACTAAATGAATAAGGACTGTTTTCCCTGCTTTGATAACTGGCCTATTAAAATAGCCAGCCCATTTCCCATTGTGGT-ATATCAGAGAGTAGCTTCTAAGAATGACAGACAAAAGAAGGAAAATAAAACTCATGCCAGTGGCCCTGGCGGGAGTGTCATTC---------------------AAGGTC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66963776 185 - 84719076 TTACGTGCAAGCTCAACTGCACTAAGTGAATGAGGACTGTTCTCCTGGCTTTGATATTTGACCTGTTAAAATGGCCAGCCCGTTTCCCTTCTTGGT-ATATCAGAGAGTAACTTATAAGAATGACAGAAAGAGGAAGGAAAAGGAAAGCCATGCCAATGGCTCTGGCAGGAGTGCCGTTC---------------------AAGACC i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 6094 184 - 7669 -TACGTGTAAGCTCATCTGCACTAAATGGATAAAGACTGTTTTCCTTGCTTTGATATTTGACATGCTGAAATGACCAGCCCGTTTGCCTTCTCGGT-ATATCAGGGAGTAACTTATAAGAATGACAGACAGAAGAAGGAAAATGAAAACCATGCCAACAACTCTCGCAGGAATGCCATTC---------------------AAGATC i proCap1.scaffold_93620 C 0 C 0 s melGal1.chr11 14294448 201 - 24221871 AAAGATCGAAACTCACTTGTAGTCCAAGAATAATGATAGTTTTTATGACCTTTCTGTTTGAGCTGTTTGAATGGCCAGCATGTTTTCCTTTTCTGC-AGTAAAAGCA-----TAATTACGATGATGATTGTATGAACTAAAATTAAAACAATTCCAGCAAACAAATTAAAACAAATTCCAACAATTCTGGTGAAAATTTCCAGCACA i melGal1.chr11 C 0 I 3 s galGal4.chr9 13787685 201 - 23441680 GAAGATTGAAACTCATTTGTAGTCCAAGAATAATGATAGTTTTTATGACCTTTTTATTTGAGCTGTTTAAATGGCCAGcgtgttttccttttctgc-agaaaaagca-----tAATTACAATGATGACTGTaaaaactaaatttgaaacaattgcagcaaacaaattaaaacaaattccaacaattctgtcaaaaGTTTCCAGCACA i galGal4.chr9 C 0 I 129 s taeGut1.chr9 15748372 185 - 27241186 GAAGGTGCAAACTCAGTTGCAGGCCATGAATAATGATCGTTTTTCtgggctttttattttagatatttgAATGACCctcatgtttttcttctctgc-agaagAGGCAGTAGTCAATTACAATGATGATTATATAAACTACAATTAAAACAATTCCAGCTGCTATGACAAAAGTAGCTCCA---------------------GGCAGA i taeGut1.chr9 C 0 I 3 s melUnd1.JH556581 3415950 154 + 8155271 GAAGAT---------------------GAATAATGATAGTTTTTCTGGCCTTTTTACTTGAGCTATTTAAATGGCCAGCAtgttttccatctctgcaaGAAAAGGCAGTAGCTAATTACGATGACGAT----AAGAATACAATTAAAA-------AGCTGTTCTTGCAGAAGTAGCTCCA---------------------AACACA i melUnd1.JH556581 C 0 C 0 s anoCar2.chr3 22341460 185 + 204416410 GAATATGAAAGCTCATTTGTAAAGCATGAATAATTATTGTTTTTCTAGCTTTCTTATTAGAACTATTAAAATGACCGGCGATCTTTCCTTCTCTAC-ACAGGAAGAAGTAACTTATTATTATGGTGGCTGCAAGAAGTGAAATTAGAATAATTCCAGATATTGTAGCAAAATTACCACCC---------------------AGGATA i anoCar2.chr3 C 0 C 0 s chrPic1.JH584458 253241 184 - 14514158 ATAGAAACAAACTCAAATGCAATCCATGAATAAGTATAGTTTTTCTGGCCTTGTTAGTTGAGCTATTGAAATGACCAGCATGTTTTCCTTCTCTCC-ATAGGAGACAATAGCTAACTATGATGATGGCCccaagaaataaaattaaaataattcccaTTGTTCTGGCAAAAGGACCACCA---------------------AAGCC- i chrPic1.JH584458 C 0 I 1 s xenTro3.GL172691 340990 185 + 3659903 GGAAGTGTAGAACAATCTGCAGTGCGTGAATCAGAATGGTTCTTTTGGCCTGTTGACTGGAACGGTTAAAATGTCCCGCTCTACTTCCTTCTCTGA-CTATTAGAATATAACTGCACAGCACAATGCTTCCCAGCAGGATCATGAAAACCATTGCTACTGTTCTGGAAAGTACACTTGAA---------------------AAAGTA i xenTro3.GL172691 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=279902.000000 s mm10.chr1_GL456221_random 113535 134 + 206961 ACAGGACAGAGCGGGGCAGACTGGAAAACAGAGGCCGGAGTAGGGCTAGTACCCTCTATGAGGAATAAGCCAACATTCTTGAGTATGACTGTGGTCCAAGTCCCAGCTAGAATCCTGTACTTAGCAGAATC---CAC s rn5.chr9 29252654 134 - 121549591 ACGGGACAGAGCGGGGCAGACTGGAAAACAGAAGCTGGCGGAGGGCTTGTACCCTCTATGAGGAATAAACCAGCATTCTTGAGTATAACCGTGGTCCACGTCCCAGCTAGAATCCTGTACTTAGCAGAATC---CAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369856 134 + 10418462 ACAGGGCATAGGGGTTCCAACTTAAAAACAGCAATGGGGGCTAAGTTAGTGACCTCGATGAGGAATAAGCAGACATTCTTGAGTATTATGGTCATCCAAGTTCCAGCCAGAATCCTGTACTTAACTGAACC---CAC i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2924868 134 - 6458163 ACAGGGCAAAGGGGTTCCGATTTTAAAACTGCACCCACAGTGGGTTTAGTGCCCTCTATAACGAACAAGCAAACATTCTTGAGTATAATGGTCGTCCAAGTCCCAGCCGGAATCCTATACTTAACTGAATC---TAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890250 134 - 106825570 ACAGGGCAAAGGGGTTCCGATTTTAAAACTGCAACCACAGTGGGTTTAGTGCCCTCTATGACGAACAAGCAAACATTCTTGAGTATAATGGTCATCCAAGTCCCAGCCAGAATCCTGTACTTAACTGAATC---TAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799012 134 - 158406734 ACAAGGCAAAGGGGTTCCGATTTTAAAACTGCAGCCACCGTGGGTTTAGTGCCCTCTATGACGAACAAGCAAACACTCTTGAGTATAATGGTTGTCCAAGTCCCAGCCAGAATCCTATACTCAACTGCATC---TAC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66963961 134 - 84719076 ACTGGGCAAAGGGGTTCAGATTCAAAAATAGCAGCCTGAGTGGAGTGACTGCTCTCTATGAGGAATAAGCAAATATTCTTGAGTATAATGATCATCCAAGTCCCAGCCAGAATCCTATACTTGACTGAATC---TAC i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 6278 134 - 7669 ACAGGGCAGAGGGGTTCTGATTTTAAAACATTCACCAGAGTGGGGTTGGTGCCCTCTATTAGGAATAAGCACACGTTCTTGAATACAATGATGGTCCATGTCCCAGCCAGAATCTTGTACTTAACTGAATT---GAC i proCap1.scaffold_93620 C 0 C 0 s melGal1.chr11 14294652 125 - 24221871 ---GGGCAAGAAGGTTCTTTTTTGATTATGTCTTCTGGTCTTTCTTGTATGCCTTCTCTTAGTAACTGACAAATAGCTTTAGGCTTTGTAATAACACAGGCACAAGTGATGA--------GGCA-GTAGCGTTTCAC i melGal1.chr11 I 3 C 0 s taeGut1.chr9 15748560 122 - 27241186 ----GGCCATGAGGTTCTGTTTTGAGTGTACCTTGAGgtgtttcttttctgccttctgtAAGTAACAGGCAAATAGCTTTAAGCTTTGTTATAATCCAAGCACAAATGATGA--------TTCACAGAGCG---CAC i taeGut1.chr9 I 3 I 7 s melUnd1.JH556581 3416104 133 + 8155271 ATTCTCCAAGGAGGTTCTGTTTTGAATGtatcttcccat-tttcttttatgcCTTCTATTAGTAATAGGCAGATAGTTTTAAGCTTTGTTATAATCCAAACATAAATGATGACTTGGAATTTCACTGAGTG---CAT i melUnd1.JH556581 C 0 C 0 s anoCar2.chr3 22341645 134 + 204416410 GTTGGGCAAGACGCCTCTGCTTTGTATATGTCCATTGGATTCTTCTCTGTACGTTCCACCAGTATCAAGCATAAAGCTTTGAGCATTGTCACAACCCAAATGGAAACCATAACTTTGTTTTTGAATGAGTG---CAC i anoCar2.chr3 C 0 C 0 s chrPic1.JH584458 253426 129 - 14514158 ATTGAGCAAGAAG-----GTATCAGACATATCTTCTGGAGTCTTGTCTATGCCTTCTATCAATAACAAGCACATAGATTTGAACATTGTTATTATCCAAACACAAATCATGACTTTGTGCTTCACTGCATG---CAC i chrPic1.JH584458 I 1 C 0 s xenTro3.GL172691 341175 131 + 3659903 GATGGACAAAGTGGATCTGTTTCTAATATACGGTCCGGTGTGTTTATAATCTCATACAACACTGATAAG---AAAGGTTCAAAAAACGCAATAATCCATATGCATGCAATTATTTTGAATTTGACAGCATG---AAC i xenTro3.GL172691 C 0 C 0 e galGal4.chr9 13787886 129 - 23441680 I e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=663025.000000 s mm10.chr1_GL456221_random 113669 276 + 206961 AAAGGATGGAGAGTTCAATGGATAACAAA-------------------TAGCGAGGTAAGTATTGAGAGCCATCAAGGTCAGAGTAAGGAGGATCCCTTCTCCCACACTTAGCTGCGCCCCAAATACCAGCCAACACAGCAGGAGGGGGC--TGTTGGCCAGTAAGGCC-CGCAT----TCCTTGGAAGACGACCCCCAGGCCACAGTAGGAGGAGATACAAAGCAGGTG-ATGGCAGAGGAGGACCAGCCGCACCTCTTTCCTCAGCTGCAGACTCTGTGACACTA-TTGCGATAATGACAAT s rn5.chr9 29252788 276 - 121549591 CAAGGATGGAGACCTCAGCGGATAACAAA-------------------TACCGAGGTAAGTATTCAGAGCCATCAGGGTCAGAGTGAGGAGGATCCCTTCTCCCACACTTAGCTGTGCCCCAAATACCAGCCAGCACAGCAGGAGGGGGC--TGTTGGCTAGGAAGGCC-CGCAT----TCCTTGGAAGACAACCCCCAGGCCACAGTAGGAGGAGACACAAAGCGAGTG-ATGGCAGAGGAGGACCAGCCGCACCTCTTCCCTCAGCTGCAGACTCTGTGACACCG-TTGCGATAATGACAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6369990 276 + 10418462 CAAGGACAGAGATTTCAGTGGCCAGCAAA-------------------TTGCCAGGTAAGTGTTGAGAGCCATCAAGGCCAGAGTGAAGAGAATCCCTTCTCCAACACTTAGCTGCACCCCAAACACCACCCAGCAGATGAGCCGCGGGC--TGTGGGCCAGCAGGGCC-CGCAT----TCCTTGGAAAACAACCCCCAGGCCACAGTAGGAGGAGATGCACAGCAGATG-GTGGCAGAGGAGGATGTGCCGGACCTCTTTCCTCAGTTTCCGATCCTGTGACACTA-TGGTGACAATGACGAT i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925002 276 - 6458163 AAAGGACAGATATTTCAGTGGCCAGCAAA-------------------TTGCCACATAAGTGTTGAGAGCCATCAAAGCCAGTATGAAGAGAATCCCATCTCCAATGCTCAGCTTGGTTCCAAACACAACCCAGCATATCAGCAGGGGGC--TGTTGGCCAGGAGCACC-CACAT----TCCTTAGAAAACAATCCCCAGGCCACAGTAGGAAGAGATGCACAGCAGATG-CTGGCAAAGGAGGATGTATCAGCCCTCTCCCCGCACCTTTGAATTCTGTAACACTA-TTGCCAGAATGATGAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890384 276 - 106825570 AAAGGACAGATATCTCAGTGGCCAGCAAA-------------------TCGCCACGTAAGTGTTGAGAGCCATCAAGGCCAGCGTGAAGAGAATCCCATCTCCAACGCTCAGCTTGACTCCAAACACCACTCAGCATATCAGCAGGGGGC--TGTTGGCCAGGAGTGCC-CGCAT----TCCTTGGAAAATGATCCCCAGGCCACAGTAGGAAGAGATGCACAGCAGATG-CTGGCAAAGAAGGATGTATCAGGCCTCTCCCCACAGCTTTGAATTCTGTGACACTA-TTGCCATAATGATGAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799146 275 - 158406734 AAAGGATAGAGATTTCAGTGGACGGCGAA-------------------TCGCCACCTAAGTATTGAGGGCCATCAAGGCTACGGTGAAGAGAATCCCTTCTCCAACACTCAGCTGGGCTCC-AACACCATCCAGCATATCAGCAGGGGGC--TGCTGGCCAGAAGCGCC-CACAT----TCCTTGGAAAACCATCCCCAGGCCACAGTAGAAAGAGATGCACAGCAGACG-CGGGCAAAGGAGGATGTATCAGGCCTCTGTCCACGGCTTTGAATTCTGTGACGCTG-TTGTCATAATGATGAC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66964095 276 - 84719076 AAAGGACAGAGATTTCAATGGCCAGCAAA-------------------TGGCCAGGTAAGTATTGAAAGCCATGAAGGCCAGAGTGAAGAGGATTCCTTCTCCAACACTTAGCTGGGCCCCAAACACCACCCAGCACATCAATACGGGGC--TGCTGACCAGCAAAGCC-CGCAT----CCCTTGGAAAACCACCCCCAGACCGCAATAGGAGGAGATACACAGCAGATG-GTGGCAAAGGAGGATGTATCGGACCTCGTTCCTCAGTTTCGAATTCTGTGTCACTA-TGGCAATAATGACGAC i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 6412 276 - 7669 AAGGGCTGGAGATCTCAATGGCCAGCAAA-------------------TTGCCAGGTAACTGTTCAGAGCCATCAAGGCCAGAGTGAAGAGAATCCCTTCTCCAACACTCAGCTGTACCCCAAACACCACCCAGCATATCAGCAGTGGGC--TGTTGGCCACCAGTGCC-CGCAT----TCCTTGGAAAACAATCCCCAGGCCACAGTAGGAAGAGATACACAGGAGATG-ATGACAAAGGAGAATGTACCGGGCCTCCTTCCTCAGTTTCCAGTTCTGTAATACTA-CCGATGTAATGACGAC i proCap1.scaffold_93620 C 0 C 0 s melGal1.chr11 14294777 259 - 24221871 ------TGAG-AAAGTAAAGGACAGCACA-------------------CATCAAGACACTGGTTAAGTACCATCAAAGGCAGAGTTCT---------CTTCCCATTTGCACCCTGTACCCCAAAGATCATCTAAACTACAAACTTCTCATTCTTCTCAT-TCAAGTGCT-TGTAC----TGTGTAACAGATGGCATCA--GTCACAGAC-ATGGAACAGCAGAATAATTC-ATGGCACATGAGAAAATATTGAATGTCTTTCTTCATTTTAGAGTGTTTTCAGACTATTTTTTTGCATTAGCAA i melGal1.chr11 C 0 I 1 s galGal4.chr9 13788015 263 - 23441680 AAGCAGTGAAtactgcaaagcacagcaca-------------------catcAAGACACTGGTTAAGTACCATCGAAGGCAGAGTACT---------C-TCCCACCTGCTCCCTGTATCCCAAAGATCATCTAAACTACAAACTGTGAAG--TTCTCAT-TCAAGTGCT-TGTAC----TGTGTAACAGATGGCATCA--GTCACAGAC-ATGGAACAGCAGAGTAGTTCAATGGCACATGAGAAAACATTAAAtgcctttcttcattttagagCATTTTCAGACTG-TTTATTGTACTAGCAA i galGal4.chr9 I 129 I 1 s taeGut1.chr9 15748689 275 - 27241186 -------AAATACTGCAGAGATCAGTATATGCAGCAAGATCAGTATAGCAGCAAGATACTGGTGAAGTGCCAACAAAACAAGAGGCCT---------TCTCCCACTTGATCCTCGTACTCCAAACATTGTCCATATTACAACTTGTGGAG--TTATCACATTAAGTACT-TTTA-----TGTTTAACAGATTGCACCATGGTCACAG---AGGGAACGACAGAGCAGGTG-ATGGCACAGGAGAAAATACTGCActtatttcttcatttgaaaGCATTCTCAAACTA-TCTCTGGTATTAGCAA i taeGut1.chr9 I 7 I 69 s melUnd1.JH556581 3416237 265 + 8155271 CAGTGGTAAATATTTCAAAGGCCAGCATA----------------------TACAGCACTGGTTAAGTGCCATCAAAGTAAAAATTCT---------TCTGCCACTTGCTCCTTGTACTCCAAAGATTATCTAAAGTACAAACTGTGGAG--TTCTCAC---AAGTACT-TGTGCTGTGTGTGTAACAGATGGCACTGAGGTCACAGAAGAGGGAACAACAGAGGAGGTG-ATGGCACAGGAGAAAATACTGAACTTCTTTATTCATTTGAATACATTCTCAAACTG-TTTTTGGTATTAGCAA i melUnd1.JH556581 C 0 I 1 s anoCar2.chr3 22341779 270 + 204416410 CAACGCAAAGTATCTCAAAGGCTGGCAAA-------------------CTGCAAAACAAGTGTTAAGAGCCATGAGAGCCAAAGTTATGAGGACTGATTCTCCGACGGCTGTTTGTACTCCAAAGATTATCCATA-TCCAGAATG-------TCTGCAC-TTTGGCATTCTGCAC----TGCGTTCAACATTGTGCCAAAGCAACAAGATAATGATGAACAGAGGAGATG-GTGGCATAGGAGAATGTATCTAATTTCTTTCTTCATGTTAGAGTTTTGTCTCACAG-TCTTTATTATTAATAT i anoCar2.chr3 C 0 C 0 s chrPic1.JH584458 253555 276 - 14514158 CAAGGATATGTATCTAAAAGGCCAGCAAA-------------------CAGCAAAGCATCTGGTAAGTGTCATCAAAGTCAAAGTTATTAGTACTCCTTCTCCAATTGCTACTTGAACTCCAAAGATTATCCAGAATACAATTCTGGGAC--TTTCCACAGCAAGTGCT-CGTAT----TGTATTGTATGCAACACCAAAACAGGAGAATAAAGAACAACATAGAAGATG-ATGGCACAGGAGAAAGTATTgaacatttttcttcatttcagagTTCTGCTGCACCA-tcttaaatataaacaa i chrPic1.JH584458 C 0 C 0 s xenTro3.GL172691 341306 276 + 3659903 AAAGGCCAGATATTTCAGTGGCCAACAGA-------------------CTGCAATGCATACGTTTACTATCATCAACACCAGGGTCATCAAAAGAACCCTTCCACATACAATCAGTACTGCAAATAGTGTCCAGCAAGCGAGTACAGGGG--CACTGGGCTTGGACGCT-CTTAC----ACTGTTATATATGGTCCCAAATGCAAAAAATAAAGTCAGGTACGTTAGGTG-GTGACACAACAGAAAAAAACGCACTTCTTTCTTCAGTACAGAATGGCTTGATATTG-TCCTTATGATCACTAT i xenTro3.GL172691 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=99143.000000 s mm10.chr1_GL456221_random 113945 57 + 206961 GGTGAGAGATGTGGTGATTGAGAAAGCCACCACGTACACAGAG-GCCTTCAC---GGTTGC s rn5.chr9 29253064 57 - 121549591 GGTGATCGATGTGGCGACTGAGAAAGCCACCACGTACACAGAG-GCCTTCAC---GGTTGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370266 57 + 10418462 GGTGATGAATGTGGCGAAGGAGAAAGCAACCAAATACACAGAG-GCCTTCAC---CGATGC i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925278 57 - 6458163 AGTGATGACTGTGGCAAACGAGAAGGTGACCACATAGACAGAG-GCCTTCAC---TGTTGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890660 57 - 106825570 AGTGATGACTGTGGCAAAGGAGAAGGTGACCACATAGACAGAG-GCCTTCAC---TGTTGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799421 53 - 158406734 AGTGATGGCTGTGGCAAAAGAGAAGGTGACCACAT----GGAG-GCCCTCAC---GGTTGC i calJac3.chr6 C 0 C 0 s equCab2.chr6 66964371 57 - 84719076 AGTGATGAAAGTGGCAAAGGAGAAAGAAACCACGTACAAAGAG-GCCTTCAC---TGTGGC i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 6688 57 - 7669 AGTGATGAACGTGGCAAAGGAGAAAGCAACCGCATAGACAGAA-GCCTTCAC---TGCCGC i proCap1.scaffold_93620 C 0 C 0 s melGal1.chr11 14295037 53 - 24221871 -GTACCTGAAATAACAGAAATGAAATCAGCTGTATGAAGAGAT-GGTTTTAC---TAC--- i melGal1.chr11 I 1 I 3 s galGal4.chr9 13788279 53 - 23441680 -GTACTtggaataataaaaatgaaatcaactGTATGAAGGGAT-GGTTTTAC---TAC--- i galGal4.chr9 I 1 I 3 s melUnd1.JH556581 3416503 53 + 8155271 -CCGACtgaagtaagaaaaa-gaaatcaactgTATAAAGAGATGGGGTTTac---tac--- i melUnd1.JH556581 I 1 I 3 s anoCar2.chr3 22342049 57 + 204416410 ACCCATGGCAGTAATGAAGATGAAATTAACAAAATACAGGCCT-GCTTTCGCAGTTAC--- i anoCar2.chr3 C 0 N 0 s chrPic1.JH584458 253831 54 - 14514158 accAACTGCAGTAATGAAGATGAACTCAAACAAGTAAAGGGAT-GCCTTTAT---TAT--- i chrPic1.JH584458 C 0 I 6 s xenTro3.GL172691 341582 57 + 3659903 TGCAAATACAGAGCATATCAAGAAGTCCACCAGGTAGATACAA-GTTTTGAC---TGTCTC i xenTro3.GL172691 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e taeGut1.chr9 15748964 69 - 27241186 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=-3734.000000 s mm10.chr1_GL456221_random 114002 17 + 206961 CTCT-------------AGTCTCAGCCAGT---------- s rn5.chr9 29253121 17 - 121549591 CTCT-------------AGCCTCAGCCAGT---------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370323 17 + 10418462 TTCC-------------AGCCTCAGCCAAT---------- i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925335 17 - 6458163 TTCT-------------AGCCTCAGCCAAT---------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890717 17 - 106825570 TTCT-------------AGCCTCAGCCAAT---------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799474 17 - 158406734 TTCT-------------CACCTCAGTCAAT---------- i calJac3.chr6 C 0 C 0 s equCab2.chr6 66964428 17 - 84719076 TTCT-------------AGCCTCAGCCAAT---------- i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 6745 17 - 7669 TTCC-------------AGCCTCAGCCAGT---------- i proCap1.scaffold_93620 C 0 C 0 s melGal1.chr11 14295093 4 - 24221871 TTCT------------------------------------ i melGal1.chr11 I 3 I 7 s galGal4.chr9 13788335 4 - 23441680 TTCT------------------------------------ i galGal4.chr9 I 3 I 7 s melUnd1.JH556581 3416559 10 + 8155271 ttctgtttgc------------------------------ i melUnd1.JH556581 I 3 I 1 s chrPic1.JH584458 253891 11 - 14514158 TTCT------TTTCTTT----------------------- i chrPic1.JH584458 I 6 C 0 s xenTro3.GL172691 341639 17 + 3659903 -----------------------AGTAAGTTGCCTTGAGT i xenTro3.GL172691 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e taeGut1.chr9 15748964 69 - 27241186 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=71294.000000 s mm10.chr1_GL456221_random 114019 58 + 206961 CAGATACGTTGCAATGCTCAGAAGATGAGTT-------------CATGGTCTTCAGGGCTGGCT---T-GGCTCC--- s rn5.chr9 29253138 58 - 121549591 CAGATATGTTGCAATGCTCAGAAGATGAGTT-------------CATGGTCTTCCGGGCTGGCT---T-GGCTCC--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370340 58 + 10418462 CTGATATGTTGCAATGCTCAGAAGACACGTT-------------CATGATCTTTGGGGCTGGCT---C-AGCTCC--- i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925352 58 - 6458163 CTGATATGTTACAGTGCTCAGAAGACAGGTT-------------CATGATCTTCGGAAACAGCT---T-GGCTCC--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890734 58 - 106825570 CTGATATGTTGCAGTGCTCAGAAGACAGGTT-------------CATGATCTTTGGGAACAGCT---T-GGCTCC--- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799491 56 - 158406734 CTGATGCGTTGCAGTGCTCAG-AGACAGGTT-------------CATGATC-TCAGGAATAGCT---T-GGCTCC--- i calJac3.chr6 C 0 C 0 s equCab2.chr6 66964445 57 - 84719076 CCGATATGTTGCAAAGCTCAGAAGACAAGTT-------------CATGATCTTCAGGG-CAACT---T-GGCTCC--- i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 6762 59 - 7669 CCGAGATGTTGCAGTGCTCAGAGGATGAGTT-------------CATGCTCTTTACTGCTTTCC---TGGGCTCC--- i proCap1.scaffold_93620 C 0 C 0 s melGal1.chr11 14295104 73 - 24221871 GTAATACAAAGTATTTTCCTTCTGACGAATCAGTTGAGGGCACTCATGATTTGTAAAGCCAGCT-CCC-AGATCC--- i melGal1.chr11 I 7 I 2 s galGal4.chr9 13788346 72 - 23441680 GTAATACAGagcattttccttctgatgAATT-GCTGAGCACACTCATGACTTGTAAAGCCAGCT-CCC-AGGtcc--- i galGal4.chr9 I 7 I 2 s taeGut1.chr9 15749033 73 - 27241186 CTGATACGGAGCATTTTCCTTCAGATGAATT-ACTAAACGTGTTCATGATGTTTAAAGGGAGCTCCCC-AGgtcc--- i taeGut1.chr9 I 69 I 2 s melUnd1.JH556581 3416570 68 + 8155271 aGGGTACTGAGCATTTTCCATCTGATGAACT-ACTGAACATGTTTATGATCTTTAaagccagca------gctcc--- i melUnd1.JH556581 I 1 N 0 s chrPic1.JH584458 253902 63 - 14514158 ---------TTGATGTATCATTCAGTGAATT-ATTGGGTAAATCCGTCATCTTCAAATCTAGCA-CTC-TGGTcc--- i chrPic1.JH584458 C 0 C 0 s xenTro3.GL172691 341656 48 + 3659903 ---------TGGAGTCATTGGTGGAAGAGTT-------------CATCCTCTGTAGGTTC-------T-GGCTTCTGC i xenTro3.GL172691 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=23325.000000 s mm10.chr1_GL456221_random 114077 12 + 206961 TGAAAGAGAGAA s rn5.chr9 29253196 12 - 121549591 TGGAAGAGAGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370398 12 + 10418462 TGGAGGAGAAAG i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925410 12 - 6458163 TGGAGGAGAAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890792 12 - 106825570 TGGAGGAGAAAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799547 9 - 158406734 TGGAGGAG---A i calJac3.chr6 C 0 C 0 s equCab2.chr6 66964502 12 - 84719076 TGCAGGATTAAA i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 6821 12 - 7669 TGGAGGGGAAAA i proCap1.scaffold_93620 C 0 C 0 s melGal1.chr11 14295179 12 - 24221871 TAAAAGAAAATA i melGal1.chr11 I 2 C 0 s galGal4.chr9 13788420 12 - 23441680 taaaagaaaaca i galGal4.chr9 I 2 C 0 s taeGut1.chr9 15749108 10 - 27241186 taaaaaaaa--a i taeGut1.chr9 I 2 C 0 s chrPic1.JH584458 253965 11 - 14514158 tggtggggaa-a i chrPic1.JH584458 C 0 C 0 s xenTro3.GL172691 341704 12 + 3659903 TATAAGAAACAA i xenTro3.GL172691 C 0 N 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=25131.000000 s mm10.chr1_GL456221_random 114089 8 + 206961 AGACCAAA s rn5.chr9 29253208 8 - 121549591 AGATCGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370410 8 + 10418462 GGACAAGA i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925422 8 - 6458163 GAACAAGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890804 8 - 106825570 GAACAAGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799556 8 - 158406734 GAACAAGA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66964514 8 - 84719076 GAACAAGA i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 6833 8 - 7669 GAACAAGG i proCap1.scaffold_93620 C 0 C 0 s melGal1.chr11 14295191 8 - 24221871 AAACAACG i melGal1.chr11 C 0 C 0 s galGal4.chr9 13788432 8 - 23441680 aaacaaag i galGal4.chr9 C 0 C 0 s taeGut1.chr9 15749118 8 - 27241186 aaacaaaa i taeGut1.chr9 C 0 N 0 s chrPic1.JH584458 253976 8 - 14514158 aaacaaaa i chrPic1.JH584458 C 0 N 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=11330.000000 s mm10.chr1_GL456221_random 114097 8 + 206961 ATGGGTGA s rn5.chr9 29253216 8 - 121549591 ATGGGTGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370418 8 + 10418462 ATAAGTGA i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925430 8 - 6458163 AAGAGTGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890812 8 - 106825570 AAGAGTGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799564 8 - 158406734 TAGAATGA i calJac3.chr6 C 0 C 0 s equCab2.chr6 66964522 8 - 84719076 AAGAGTGA i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 6841 8 - 7669 AAGAGTGA i proCap1.scaffold_93620 C 0 C 0 s melGal1.chr11 14295199 1 - 24221871 -------A i melGal1.chr11 C 0 I 4 s galGal4.chr9 13788440 1 - 23441680 -------a i galGal4.chr9 C 0 I 7 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=12302.000000 s mm10.chr1_GL456221_random 114105 18 + 206961 CTCTGC-CTGAAGCTCCTT- s rn5.chr9 29253224 18 - 121549591 CTCTGC-CTGAAGCTCCTT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370426 18 + 10418462 CTCTGTGCTGAAGCTGCT-- i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925438 19 - 6458163 ATCTGTGTTAAAGCTTCTT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890820 19 - 106825570 ATCTGTGTTAAAGCTTCTT- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799572 19 - 158406734 ATCTGTGTTAAAGCTTCCT- i calJac3.chr6 C 0 C 0 s equCab2.chr6 66964530 19 - 84719076 ATCTGCATTAAAGCTTCTT- i equCab2.chr6 C 0 I 529 s proCap1.scaffold_93620 6849 19 - 7669 GTCCGTGTTGAAGCTGCTG- i proCap1.scaffold_93620 C 0 I 2 s melGal1.chr11 14295204 18 - 24221871 --CAGTGCACAGTGCACTTT i melGal1.chr11 I 4 C 0 s galGal4.chr9 13788448 18 - 23441680 --CTTTGCACAGTGAGCTTG i galGal4.chr9 I 7 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=431.000000 s mm10.chr1_GL456221_random 114123 5 + 206961 GT-GCA s rn5.chr9 29253242 5 - 121549591 GT-GTG i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 2925457 5 - 6458163 GT-GGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890839 6 - 106825570 GTGGGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799591 5 - 158406734 GT-GGG i calJac3.chr6 C 0 C 0 s proCap1.scaffold_93620 6870 5 - 7669 GT-GGT i proCap1.scaffold_93620 I 2 C 0 s melGal1.chr11 14295222 5 - 24221871 GC-ACA i melGal1.chr11 C 0 N 0 s galGal4.chr9 13788466 5 - 23441680 AT-GCT i galGal4.chr9 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6370444 0 + 10418462 C e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66964549 529 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=-2113.000000 s mm10.chr1_GL456221_random 114128 1 + 206961 -C s rn5.chr9 29253247 1 - 121549591 -C i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 2925462 1 - 6458163 -T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890845 1 - 106825570 -T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799596 1 - 158406734 -T i calJac3.chr6 C 0 C 0 s galGal4.chr9 13788471 1 - 23441680 A- i galGal4.chr9 C 0 C 0 e proCap1.scaffold_93620 6875 0 - 7669 C e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6370444 0 + 10418462 C e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66964549 529 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=4383.000000 s mm10.chr1_GL456221_random 114129 2 + 206961 CT s rn5.chr9 29253248 2 - 121549591 TT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_152842 800 2 - 1477 CT i dipOrd1.scaffold_152842 N 0 I 10 s speTri2.JH393335 6370444 2 + 10418462 CT i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925463 2 - 6458163 TT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890846 2 - 106825570 TT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799597 2 - 158406734 TT i calJac3.chr6 C 0 C 0 s proCap1.scaffold_93620 6875 2 - 7669 TT i proCap1.scaffold_93620 C 0 C 0 s galGal4.chr9 13788472 2 - 23441680 TT i galGal4.chr9 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66964549 529 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=3569.000000 s mm10.chr1_GL456221_random 114131 3 + 206961 TCT s rn5.chr9 29253250 3 - 121549591 TCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370446 3 + 10418462 TGT i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925465 3 - 6458163 TCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890848 3 - 106825570 TCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799599 3 - 158406734 CCC i calJac3.chr6 C 0 C 0 s proCap1.scaffold_93620 6877 3 - 7669 TCT i proCap1.scaffold_93620 C 0 C 0 s galGal4.chr9 13788474 3 - 23441680 TCT i galGal4.chr9 C 0 N 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_152842 802 10 - 1477 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66964549 529 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=1788.000000 s mm10.chr1_GL456221_random 114134 2 + 206961 GG s rn5.chr9 29253253 2 - 121549591 GG i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370449 2 + 10418462 GA i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925468 2 - 6458163 AG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12890851 2 - 106825570 AG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799602 2 - 158406734 AG i calJac3.chr6 C 0 C 0 s proCap1.scaffold_93620 6880 2 - 7669 AG i proCap1.scaffold_93620 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_152842 802 10 - 1477 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66964549 529 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=2735.000000 s mm10.chr1_GL456221_random 114136 5 + 206961 CTCTG------------ s rn5.chr9 29253255 5 - 121549591 CTCTG------------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370451 5 + 10418462 CTCTC------------ i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925470 5 - 6458163 CTCTC------------ i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 12890853 5 - 106825570 CTCTC------------ i rheMac3.chr12 C 0 I 2 s calJac3.chr6 11799604 5 - 158406734 GTCTC------------ i calJac3.chr6 C 0 I 2 s equCab2.chr6 66965078 5 - 84719076 CTCTG------------ i equCab2.chr6 I 529 C 0 s proCap1.scaffold_93620 6882 17 - 7669 CTCTTTCTTGGCACAAG i proCap1.scaffold_93620 C 0 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_152842 802 10 - 1477 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=6343.000000 s mm10.chr1_GL456221_random 114141 3 + 206961 ATC s rn5.chr9 29253260 3 - 121549591 ATC i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_152842 812 3 - 1477 ATC i dipOrd1.scaffold_152842 I 10 I 235 s speTri2.JH393335 6370456 3 + 10418462 AGC i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925477 3 - 6458163 GTC i nomLeu2.GL397366 I 2 I 1 s rheMac3.chr12 12890860 3 - 106825570 GTC i rheMac3.chr12 I 2 I 1 s calJac3.chr6 11799611 3 - 158406734 GTC i calJac3.chr6 I 2 I 1 s equCab2.chr6 66965083 3 - 84719076 ATC i equCab2.chr6 C 0 I 1 s proCap1.scaffold_93620 6899 3 - 7669 ATC i proCap1.scaffold_93620 C 0 I 1 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=91264.000000 s mm10.chr1_GL456221_random 114144 153 + 206961 TGTGTTCAGGCGCAAGGACTAGACAGTG------TTCTGCAA---GGGATGATGACTTTACATAGCATCA-TGCAGGTC--------------------------------TTTCTTTAATT----AGGGAAGGGGCATCTAGGTAAGTCAC---------AAAAAGGAAGGCTGGAAGATGTATCAGCCTGAGCA---ATCAAATGACTC s rn5.chr9 29253263 155 - 121549591 TGTGTTCGGGCACAAGGACTAGACAGTGC----CCTCTGCAA--GGGGACAATGACGTTAGATGGCATCG-TGCAGGTT--------------------------------TCCCTTTAATT----AGGGAAGGGGCATCTGGGTGAGCCAT---------GAAAAGGAAGG-TGGAAGATGTATCAGCCTGAGTA---ATCAAATGGCTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370459 188 + 10418462 --TGTCCCTTCTCAAGGAATAGA---TGCACATCCCTTGGGATAGAGGAAGACAACTTTAGATAGTATTGATATGGATCAGTGAAATAGGAGAAA---TCCTCAGAAGTCGTCTGCTTAGTT------GACGGGGTCATATAATCAAATCAT------ACAAAAAAGGAGGTTTGAAAGATGTGT---TCTGAGCACCCAGCAGATTGCTC i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925481 206 - 6458163 TATGTTCAGGCTCAAGGAACAGAT--TGAACATTCTTCAGTATAGAAGATAACAATTTTTGATAGTATTGATAGGGATCAAAGAAATAGGAGAAATCATTCTGGGTGTTCTTTATATTAATATTTCAGGGGAGGGACATATACAGAAATTATACACACACACACACAAAGCTTTGAAAGATATAC---TCTTTGTACTTAGAAAATTGCTC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 12890864 203 - 106825570 TGTGTTCAGTCTCAAGGAACAGAT--TGAACATTCTTCAGTATAGAAGATGACAATTTTTGATAGTATTGATAGGGATCAAAGAAAGAGGAGAAA-CATCCTGGGTGTTCTTTATATTAATATTTCAGGAGAGGGACATATACACAAATTAT--CCACACACACACAAAGGTTTGAAAGATATAC---TCTTTGTACTCAGCAAATTGCTC i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11799615 203 - 158406734 TGTGCGCGGTCTCAAGGAACAGAT--TGTGCATTCTTCAGTATAGCAGATGACAATTTTTAATACTATCAATAGAGATCAAAGAAACAGGAGAAATCATCCTGGCCATTCTTTATATTAGTATTTCAGGGGAGGGACATATACACAAATTAT--CCATACACACA-AAAGGTTTGAAAGATATAC---TCTTTGTACTAAGCAAATTGCTC i calJac3.chr6 I 1 C 0 s equCab2.chr6 66965087 193 - 84719076 TGCACACAGCCTCAAGGGGCAGAT--TGCATGTTTTTTGGTACAGAGGATGACAATTTTAGATAGGATTGACATGGATGAAAGGAACTGGAGAAGTCATCTGGGGTCTTCTGTTTATT------TCAGAGGACGGGCATATACTCAAATCAT-------CTGAAAGGAGGGTTTGAAAGATGTGC---CCTCCGTACTTAGCAAATTGCTC i equCab2.chr6 I 1 C 0 s proCap1.scaffold_93620 6903 145 - 7669 TGCAATCAGGCTCACGGAATAGG---TGTCTGTGTTTCCCTATCAAGGAAGACCATTTCTTAGAGTATGGATATGGATTGAAGGAGTTGGAGAAATCAC------------------------------GTAGAGTC-----------TTAC---------AAAAGGAATATATGGAAGATGTCT---TCTGGGCACTTGG---------- i proCap1.scaffold_93620 I 1 C 0 e pteVam1.scaffold_409 23574 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_152842 815 235 - 1477 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=-3800.000000 s mm10.chr1_GL456221_random 114297 1 + 206961 -A s rn5.chr9 29253418 1 - 121549591 -G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370647 1 + 10418462 -C i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925687 1 - 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12891067 1 - 106825570 -A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799818 1 - 158406734 -A i calJac3.chr6 C 0 C 0 s equCab2.chr6 66965280 1 - 84719076 -A i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_409 27023 1 - 380355 -G i pteVam1.scaffold_409 I 3449 n 3449 s proCap1.scaffold_93620 7048 1 - 7669 T- i proCap1.scaffold_93620 C 0 C 0 e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_152842 815 235 - 1477 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=35947.000000 s mm10.chr1_GL456221_random 114298 52 + 206961 ----------AGTTTGGGCCAAGA-TCTAACACAGAGAGCTAATGGCCGTGTGTCCTTTTCCA s rn5.chr9 29253419 52 - 121549591 ----------AGTTTGGGCCAAGA-TCTAATGTGGAGAGCTAATGCCTGTGTGTCCTTTTCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370648 41 + 10418462 ----------AATTCAGGTCAGCAGTCTGAT------------TCTTCATGCATCTTTTTCTT i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925688 40 - 6458163 ----------AATTCAGGTCAAGG-TTTCAC------------TGCTTATGCATCCTTTTCTA i nomLeu2.GL397366 C 0 I 25 s rheMac3.chr12 12891068 38 - 106825570 ----------AATTCAGGTCAAGG-TTTTAC------------T-CTTAT-CATCCTTTTCTA i rheMac3.chr12 C 0 I 25 s calJac3.chr6 11799819 40 - 158406734 ----------AATTCATGTCAAGG-TTTTAC------------CGCTTATGCGTCCTTTTCTA i calJac3.chr6 C 0 I 25 s equCab2.chr6 66965281 40 - 84719076 ----------AAATCAGGTCGCAG-TTGTAC------------TCCTTACGCATCCTTTTCCA i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 7049 50 - 7669 AGTTTGCTCAAAGTCAAGTCAAAG-TTCTTC------------TGTTTATGCATCCTTTTCCA i proCap1.scaffold_93620 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_152842 815 235 - 1477 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=2597.000000 s mm10.chr1_GL456221_random 114350 2 + 206961 TC s rn5.chr9 29253471 2 - 121549591 TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370689 2 + 10418462 TC i speTri2.JH393335 C 0 C 0 s ochPri2.scaffold_6229 99771 1 - 114316 -C i ochPri2.scaffold_6229 N 0 I 1 s nomLeu2.GL397366 2925753 2 - 6458163 TA i nomLeu2.GL397366 I 25 C 0 s rheMac3.chr12 12891131 2 - 106825570 TT i rheMac3.chr12 I 25 C 0 s calJac3.chr6 11799884 2 - 158406734 TT i calJac3.chr6 I 25 C 0 s equCab2.chr6 66965321 2 - 84719076 TC i equCab2.chr6 C 0 C 0 s proCap1.scaffold_93620 7099 2 - 7669 TC i proCap1.scaffold_93620 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e dipOrd1.scaffold_152842 815 235 - 1477 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=27.000000 s mm10.chr1_GL456221_random 114352 1 + 206961 T s rn5.chr9 29253473 1 - 121549591 A i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_152842 1050 1 - 1477 T i dipOrd1.scaffold_152842 I 235 N 0 s speTri2.JH393335 6370691 1 + 10418462 T i speTri2.JH393335 C 0 I 32 s ochPri2.scaffold_6229 99773 1 - 114316 T i ochPri2.scaffold_6229 I 1 C 0 s nomLeu2.GL397366 2925755 1 - 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12891133 1 - 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799886 1 - 158406734 C i calJac3.chr6 C 0 C 0 s equCab2.chr6 66965323 1 - 84719076 T i equCab2.chr6 C 0 I 25 s proCap1.scaffold_93620 7101 1 - 7669 T i proCap1.scaffold_93620 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=-12120.000000 s mm10.chr1_GL456221_random 114353 22 + 206961 -------------------------GGAACAT-----------------AGTCAAATGACTTTG s rn5.chr9 29253474 21 - 121549591 -------------------------GGAGCACG---------------AGGTCAAATGGTT--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370724 29 + 10418462 -------------------------AAAGCATA----------TTATCAAGTCAATTGATTAGC i speTri2.JH393335 I 32 C 0 s ochPri2.scaffold_6229 99774 18 - 114316 ----------------------------------------------TGCATTGTGGTGACTTTG i ochPri2.scaffold_6229 C 0 N 0 s nomLeu2.GL397366 2925756 39 - 6458163 -------------------------AGAGCATGAAGTGCAACATTATCAAACCAATTGATTAGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 12891134 39 - 106825570 -------------------------CAAGCACAAAGCACAACATTATCAAACCAACTGATTAGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 11799887 39 - 158406734 -------------------------AGAGCACAAAGCATAATGTTATCAAGCCAAATGATTAGT i calJac3.chr6 C 0 C 0 s equCab2.chr6 66965349 21 - 84719076 -------------------------AGAGCACAAAGCACAACATTG------------------ i equCab2.chr6 I 25 C 0 s proCap1.scaffold_93620 7102 46 - 7669 TTGACTGTGACAACTTTTTCAATTCAGAGCACAAAACACAACATTC------------------ i proCap1.scaffold_93620 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=223703.000000 s mm10.chr1_GL456221_random 114375 277 + 206961 -------------------TGTTAGGCATGTGTT---------AAGA--TAGGACATACAAAGTTCCGAGGTAGCAGTTAAGGTCAGGGCTG-G-GGAAGGTAAG--------------CAACTTATTAGGCCAGGGCCATCACTCATCTGTGGGTCCCTAAGACATGA---GGAGGCTAACAGTGGTGGACTGCAGTAACAGGTGACACTTCCTGGGTAATTTCTAGGAAGC--AAACTATCCTCATAGTAT--TTCTCTCAGTTCCCTGGTAGG---TGTTTCATGTCTCATAACGTGGTTTTACTATGCATCTTTTCCAGATGAGA-AAAC s rn5.chr9 29253495 270 - 121549591 -------------------TGTTAGCCGTGTGTT---------AAAA--TAGTATGTACAAAGGTCCAAGGCCAGGGTTAAGGTCATGGTGG-GAGGAAGGTAAG--------------CAAC-------GCCAGGGCCTTCACTTGTTTGTTGGTCCCCAAGACACGA---GGAGGCGAACAGTGGTGGACTGTGGTCACAGGTAACACTGACTGAGTGCTCTCTAGGAAGC--AAACTATTCTCATAGTA---TTCTCTCCATTCCCCGGTGGG---TGTTTCATGGCTCATCAAGTGGCTttatcatgcatcttttccaggtgagg-aaac i rn5.chr9 C 0 C 0 s speTri2.JH393335 6370753 255 + 10418462 -------------------CACTAAGCCCATGTT---------AACACCTAGGGCCTGCCGAGGTCTGGGGAAGAGGTGGGGGCCAGAGCTG---TGAGGACCGG--------------TCATTCA----TTCAGGGCCTTC----------------------CACGAAAGGGAGATGAACAGTGAT-GATGGCCATCAGGGCTGACATTTGCTGGACTCTCTCCAGGAGTTA-AAACCTGTCTCAGAGCATA-TTCCTCAGGACCCCCAGTAG-----GTTTTATCTCTCAGCAAGCAGTTTTAAAATGCACTTTTCACAAATGAAATGAAA i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2925795 282 - 6458163 -------------------CACCAAGCACTTGTT---------AACATTAAGTACATGCAAAGGTCTAGGGAGGGAGTTAGGTCAAGAGCTGTGAGTAATGTGGG--------------GAAGTCATTGACTTAGAGCTTTCAATTCATT-TAGGTCCATAGGACATGAAAGAGAGATTCACAATAAT-GATAGTaatcataggtgacatttactgagtactttctaggaatcaaaaactgttttcagagcatatttctcactattcc----tggg---tgttttatttctcaccgagtggttttattatgcacttttcacaagtggag-aaac i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 12891173 282 - 106825570 -------------------CACCAAGCCCTTGTT---------AACATTATGTACATGCAAAGGTCCAGGGAGAGAGTTAGGTCAAGAGCTGTGAGGAATGTGGG--------------GAAGTCATTGACTTAGAGCTTTCAATTCGTT-TAGGTCCATAGGACATGAAAGAGAGATTTGCAATAAT-GATAGTAATCATGGGTAACATTTACCGAGTACTTTCTAGGAATCAAAAACTGTTTTCAGAGAATATTTCTCACCATACC----TGGG---TGTTTTATTTCTCACCGAGTGGTTttattatgcgcttttcacaagtggag-aaat i rheMac3.chr12 C 0 I 2 s calJac3.chr6 11799926 274 - 158406734 -------------------CACCAA--------T---------TGCATTTAGTACATGCAACGGCCTAGGGAGGGAGTTAGGTCAAGAGCTGTGAGGAATGCGGG--------------GAAGTCATTGACTTAGAGCTTTGAATTCATC-TAGGTCCACAGGACGTGAAAGAGAAATTAACAATAAT-GATAGTAATCATGGGTGACATTTACTGAGTACTTTCTAGGAATCATAAACTGTTTTCAGAGCATATTTCTCACTATACC----TGGG---TGTTTTATTTCCCAAGGAGTGGTTttattatgcacttttcacaagtggag-aaat i calJac3.chr6 C 0 I 2 s equCab2.chr6 66965370 288 - 84719076 -------------------TAAAAGTCAACTGATTAACCACCAAACACTTAGTTCATGCAAAGGTCTGGGGAAGAAGTTAGGGCAGGAGCTGTGAGGAATGAGAA--------------GAAGTTGCTG---CCAAGACTGGAATTCATT-TGGGTCCACAAGACATGAAAGGGAGATTAACAATAAT-GACGACAATCCTGGGTGATATTTACTGAGTACTTTCTAGGGATCAAAAGC---TCTTAGAGCATATTCCTCACTAACCC----TGGGGCACGTTTTATTTTCCACCAAATGGTTttattatgcacatttcacaaatgggg-aaac i equCab2.chr6 C 0 I 2 s proCap1.scaffold_93620 7148 304 - 7669 TGAAAGTCAGTCAGTTAACCACCACATGTGTGTT---------AACACTCAATACTTGCAAAGTTCTGGGAAAGAAATTGGGGCAAGAGCCTTGAGGAATACATGAAGCCAAAGATGTAGAAGTCATTGACTCAGAAAGCTGAGCCCA---TGGGGCACAAAGATGTGAAAAGTTGACCAACAGTACT-AACGACAATCAG----GACAAT-----AATACTTTCT-GTGGTC--AAGTTTTCCTCAGAGTACATTCTTCACTAGCCC----TGGGGTATGTTTTCTTTTCCATCAGATGGCTttattatgtacttttcacaaacgggg-aaac i proCap1.scaffold_93620 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 60262 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=-2939.000000 s mm10.chr1_GL456221_random 114652 1 + 206961 -C s rn5.chr9 29253765 1 - 121549591 -g i rn5.chr9 C 0 C 0 s speTri2.JH393335 6371008 1 + 10418462 -A i speTri2.JH393335 C 0 C 0 s proCap1.scaffold_93620 7452 1 - 7669 t- i proCap1.scaffold_93620 C 0 I 1 s dasNov3.JH566347 135241 1 - 1805508 t- i dasNov3.JH566347 I 74979 n 74979 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891455 2 - 106825570 I e equCab2.chr6 66965658 2 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926077 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e calJac3.chr6 11800200 2 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e micMur1.scaffold_153902 953 0 + 953 I a score=18311.000000 s mm10.chr1_GL456221_random 114653 9 + 206961 AGGCTTAGG s rn5.chr9 29253766 9 - 121549591 aagcttagg i rn5.chr9 C 0 C 0 s speTri2.JH393335 6371009 9 + 10418462 AGACTTAGA i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 2926079 9 - 6458163 agacttagg i nomLeu2.GL397366 I 2 n 2 s rheMac3.chr12 12891457 9 - 106825570 agacttaga i rheMac3.chr12 I 2 I 1 s calJac3.chr6 11800202 9 - 158406734 agacttaga i calJac3.chr6 I 2 I 1 s equCab2.chr6 66965660 9 - 84719076 agacttgga i equCab2.chr6 I 2 I 1 s proCap1.scaffold_93620 7454 9 - 7669 aggcttaga i proCap1.scaffold_93620 I 1 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=-3400.000000 s mm10.chr1_GL456221_random 114662 2 + 206961 -AA s rn5.chr9 29253775 2 - 121549591 -aa i rn5.chr9 C 0 C 0 s speTri2.JH393335 6371018 2 + 10418462 -AG i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 12891467 1 - 106825570 -a- i rheMac3.chr12 I 1 C 0 s calJac3.chr6 11800212 1 - 158406734 -a- i calJac3.chr6 I 1 n 1 s equCab2.chr6 66965670 1 - 84719076 -a- i equCab2.chr6 I 1 C 0 s proCap1.scaffold_93620 7463 2 - 7669 ga- i proCap1.scaffold_93620 C 0 N 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926088 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=2202.000000 s mm10.chr1_GL456221_random 114664 4 + 206961 CGCT s rn5.chr9 29253777 4 - 121549591 agct i rn5.chr9 C 0 C 0 s speTri2.JH393335 6371020 4 + 10418462 GGCT i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 12891468 4 - 106825570 ggct i rheMac3.chr12 C 0 C 0 s equCab2.chr6 66965671 4 - 84719076 tgct i equCab2.chr6 C 0 n 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926088 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e calJac3.chr6 11800213 1 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=-96.000000 s mm10.chr1_GL456221_random 114668 1 + 206961 A s rn5.chr9 29253781 1 - 121549591 t i rn5.chr9 C 0 C 0 s speTri2.JH393335 6371024 1 + 10418462 A i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 12891472 1 - 106825570 a i rheMac3.chr12 C 0 n 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 66965675 0 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926088 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e calJac3.chr6 11800213 1 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=7618.000000 s mm10.chr1_GL456221_random 114669 88 + 206961 C-------------AGGCTTGAGAGTCCTTcagaggcccatgtgctctcagcttaat-ccccaggatcgccctactgggagatggtgaaacctgt-gagatag s rn5.chr9 29253782 83 - 121549591 a-------------aAGCttgagagcccctcagaggcctatgcgctttaggcttggtaccccaggatgtccctcttaggagatggtggaaccCAC-------G i rn5.chr9 C 0 C 0 s speTri2.JH393335 6371025 101 + 10418462 AGATTTACCgtttggatcttgaatgtctcccaaatgcttaagtg-ttaaagattagt-ccccaggatggcactactgggagatggtggggcctggtgagagag i speTri2.JH393335 C 0 n 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 66965675 0 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926088 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e calJac3.chr6 11800213 1 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=16127.000000 s mm10.chr1_GL456221_random 114757 235 + 206961 aggcctggggctgcaggtggagctcggttaacagagtgctcacctagcacatacaaagtcctaggtttgatcccagcacggcacacgcaccgggGCTCACCATAGCTGGGGATA---CCCCATTCTCTGTATTTGATCCTACTTGCCACCCTTCATTTTACCTAGAATCCCAGACAGTCCCCCAAATTTCCTCCATCCCTACTCAGCAGACCTCTCTGTCCCTGCCTGGGGTATCCCA s rn5.chr9 29253865 237 - 121549591 AGGCCCggggctgtgactggagcttggttagcagagcgctcacctagcatgtacaaagccctaggtttgatcccagcaccgcacatgcaccgggGCTCGCCATCGCCAGCTAAAGAGCTACATTCTCTGTATTTGATCCTACTTGCCACCCTTCGTTTTGCCTAGAATCCCAGCCAGCCCTCCGGGATGCCTCCAT-CCTACTCAGCAGGCCTTCCCGTCCCTGCCTGGGGTATCCCA i rn5.chr9 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 66965675 0 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926088 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e calJac3.chr6 11800213 1 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=-973.000000 s mm10.chr1_GL456221_random 114992 6 + 206961 -TGATGG s rn5.chr9 29254102 6 - 121549591 -TGTTGG i rn5.chr9 C 0 C 0 s vicPac1.scaffold_371 66813 6 - 946679 CTCTCC- i vicPac1.scaffold_371 N 0 N 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 66965675 0 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926088 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e calJac3.chr6 11800213 1 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=7507.000000 s mm10.chr1_GL456221_random 114998 100 + 206961 GTACACACCTGCTCCATTCCCTGTGAGCCAAGCAGTCAGTCATGATCAGGGATCTAGTCAAGTGTGTTCCAAGACTCCAAGCCCAGTCACTGTACACTCC s rn5.chr9 29254108 95 - 121549591 GCACACACCTGCTCCA-----TATGAGCCAGGCAGTCAGCCATGATCAGGGCGCTAGCCAAGTGTGTTCCAAGACTCCAAGCCCAGTCACTGTACACTCC i rn5.chr9 C 0 n 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 66965675 0 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926088 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e calJac3.chr6 11800213 1 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=0.000000 s mm10.chr1_GL456221_random 115098 1896 + 206961 tgtacaggctagttttgtgtcaacttgacacagctggggttatcacagagaaaggagcttcagttgaggaaatgtctccatgagatccaactctaaggcattttctcaattagtgatcaagggggaaaggccccttgtgggtgggaccatctctgggctggtagtcttgggttctataagagagcaggctgagtaagccaggagaggcaagccagtaaagaacatccctccatggcctctgcgtcagctcctgccccctgacctttttgagttccagtcctgacttcctttggtgatgaacagcagcatggaagtgtaagctgaataaaccctttcctccccaacttgcttcttggtcatgatgtttgtgcaggaatagaaaccctgtctaagacaaattggtaccagcagagtggggtattcctgttacaacctgaccatgttttggggaggtctgtggaaggactttgggactttggtcttgaagatccattcgttgttaagagctctgtggaatgttgtgtgggagcttggaagataatgttgagaacagtgcagaagatggaggcctggcttgtgaaatttcagagggaaaattaaagactcttttcagggccattgctgttttgattgtgaagattctgtagttctgtttagctggggctgaagaatcagctgtgattaacaagatactagaactactaaagcaaaaactttgcattactgggactattgatgctggttatctggagctaagaaattagtggtgattaagaagagaccagcatcattgaggtgacatcttctgggaagtgttttctgagagcacagtggctgtgttccagatatagccaaagttgtaccttgtgctgtggctggacttggtaatgtgtaagggtcacccaggtggtactggttttgaaggcatgaaggagttgagcagagcagctgaggcttggcactgtgagaggccaaggaaggccattggtgaaagtccagcctcagttgcaattgatggcccaggactgaaggggtcatgcagtgttttggagatgccagtacaatgagatgaccaccaagagcagcagcaacagcagtggagtacaggcatctggagcctagaggatgatgcgtgtgctacaaagggcatggctgaagaagtgacccaagcccttggaggagcccagaagatcttaagttggacccagacattggacggttggagattgacttttgcttttgattgtggctgtgccctgatattttccctcttgaaggaagaaactgttttagtggagcccacagttaagagacttttaattgtaaaaagactttggattttaaaagagatggatattttaaagagattgaaattttaagaatatgtaaagactgtgggacttttaaagttatttagatcttggggatgaataagaatgtaagggttgaggcttactagtgatgtgtttgtgtgtcaagttgacaaggggtcaattgtactggctagttttgtgtcaacttgaaacagctggggttatcacagagaaaggagcttcagttgaggaaatgcctccatgagaaccaactctaaggcattttctcaattagtgatcagggggaaaggccccttgtgggtgggaccaactctgggctggtagtcttgggttctataagagagcaggctgagcaagccaggagaggcaagccagtaaagaacatccctccatggcctctgcatcagctcctgctccctgacctgtttgagttccagtcctgacttcctttggtgatgaacagcagcatggaagtgtaagccgaataaaccctttcctccccaacttgctttttggtcatgatgtttgtgcaggaatagaaaccctgactaagacaACTCCT e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 66965675 0 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926088 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e calJac3.chr6 11800213 1 - 158406734 I e felCat5.chrC1 9077189 83 - 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 n a score=1931.000000 s mm10.chr1_GL456221_random 116994 12 + 206961 TTCTTTATGCTG s felCat5.chrC1 212417946 12 + 221441202 TCCTTCATGGTA i felCat5.chrC1 T 9478 C 0 s ailMel1.GL192536.1 1042370 12 - 2169676 TCTTTCATGGTA i ailMel1.GL192536.1 N 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 66965675 0 - 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926088 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e calJac3.chr6 11800213 1 - 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 I a score=668.000000 s mm10.chr1_GL456221_random 117006 48 + 206961 TAGAGGAAGATCAC---TGGGGACCAAA-GTTGAGAAGAAAGTAATAAGGGT----------- s felCat5.chrC1 212417958 51 + 221441202 TAGAAG-CAATAGTGTGTGGTGACTGAATGACAAGAAGGAGAAAGAAGGTAT----------- i felCat5.chrC1 C 0 I 10 s ailMel1.GL192536.1 1042382 51 - 2169676 TAGAGG-AGACAGTGTGTGGTGACAGAACAATGAGAAGGAGAAAGGAGGTGT----------- i ailMel1.GL192536.1 C 0 I 13 s equCab2.chr6 17865260 46 + 84719076 -----------------TACAGATAGGAAACTGAGAAGCAGAGAGCAGGAGAGCCAGGTGAAT i equCab2.chr6 T 2167 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926088 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e calJac3.chr6 11800213 1 - 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 I a score=29510.000000 s mm10.chr1_GL456221_random 117054 99 + 206961 -GAGCAGAAAGAGACAGAGTAAGGCTCTGGGTGAGTGGGGGAGAGCATCTCAGATGAGGT---------------------------GAAGTAACTCACCTATTTCCTGGGTGCTAGAACCCAGAGA s felCat5.chrC1 212418019 98 + 221441202 -ACAGAAGAAGAGGCAGAGCAGGGCTGTGGATC-------------GTCTTAGGTGAGGTTTT--------------ATTTTCCCAAGGAGAAGCTCACCTGAGCCCTG-ACACCAGAATTCAGTGT i felCat5.chrC1 I 10 C 0 s canFam3.chr25 42485413 98 + 51628933 -GAAGAAGAAAAGGCAGAGCGAGGCTCTGGTAG-------------GTCTTAGGCAAAGTCCT---------------TTTTCCCAAGGAGAAGCCCACCTGAGCGCTGAACACCAGAGCTCAGCAC i canFam3.chr25 N 0 C 0 s ailMel1.GL192536.1 1042446 98 - 2169676 -GGAGAAGAAGAGGCAGAGCAAGGCTCTGGTAG-------------GTCTTAGGCAAGGTCCT---------------TTTTCCCAAGGAGAAGCTCATTTGAGTGCTGAACACCAGAATTCAGCAT i ailMel1.GL192536.1 I 13 C 0 s equCab2.chr6 17865306 111 + 84719076 GAGATGGAAACAGGCAGAGCAGGGCTCAACTGG-------------ATCTCAGGTGTGGTCCTTAGAGCAGATGTCCATTTTCCCAA-AAGCAGCTCACCTGTGCTCTGAACAGCCTGGCTCAGC-- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 2926088 2 - 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 12133224 0 - 247518478 I e hg19.chr2 12196033 0 - 243199373 I e calJac3.chr6 11800213 1 - 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 I a score=3468.000000 s mm10.chr1_GL456221_random 117153 11 + 206961 GAGTGCTTGGA s hg19.chr2 231106052 11 + 243199373 GAGCACACTGA i hg19.chr2 T 28076 C 0 s panTro4.chr2B 235487419 11 + 247518478 GAGCACACTGA i panTro4.chr2B T 24435 C 0 s nomLeu2.GL397366 3636047 11 + 6458163 GAGCACACTGA i nomLeu2.GL397366 T 23782 C 0 s felCat5.chrC1 212418117 5 + 221441202 G------CTAA i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42485511 11 + 51628933 AAGTGCCCTGA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1042544 11 - 2169676 GACGTTCCCGA i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 17865417 0 + 84719076 C e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e calJac3.chr6 11800213 1 - 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 I a score=192834.000000 s mm10.chr1_GL456221_random 117164 148 + 206961 AGTCTCTGCT-TCATAACTGTCTGA-TTTGGTCATTTTC---TTGCTTCTCCTCAGTTTCTGACAGTCACAGGACTCATCAGAGGATAAATGGAAGAAATGTTGAAGAGAGGCCCAGACTGCCATCAGTTGTTAGGGAAGGTGATTATGTTTT s hg19.chr2 231106063 152 + 243199373 GGTCTCTCCTCTGGTCACTGTCTGAGTTTGGTAATTTTCACATTG-TTTTCCTCAGTATGCTATGAACACTCACCTCTCCAAATGAATAATGTAAACGATTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i hg19.chr2 C 0 I 4463 s panTro4.chr2B 235487430 152 + 247518478 GGTCTCTCCTCTGGTCACTGTCTGAGTTTGGTAATTTTCACATTG-TTTTCCTCAGTATGCTATGAACACTCACCTCTCCAAATGAATAATGTAAACGATTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i panTro4.chr2B C 0 I 4466 s nomLeu2.GL397366 3636058 152 + 6458163 GGTCTCTCCTCTGGTCACTGTCTGAGTTTGGTGATTTTCACATTG-TTTTCCTCAGTATGCCATGAACACTCACCTCTCCAAATGAATAATGTAAGCGAGTTAGAAGATAGACCCAGATTACTACCATATGGTAAACAAGGTAACTATCATTT i nomLeu2.GL397366 C 0 I 4442 s calJac3.chr6 146712775 152 + 158406734 AGTCTCTCCTCTGGTCACTGTCGGAGTTTGGTAATTTTTACATTG-TTTTCTTCAGCATGCTATGAACACCCACCTCGCCAAGTGAACAATGTAAGCGGGTTAGAAGATAGACCCAGATTACTACTGTGTGATAAACAAGGTGACTATCATTT i calJac3.chr6 T 29011 I 6204 s felCat5.chrC1 212418122 149 + 221441202 GATCTGTTCCCTCATCATCATATGTGGTTGGTCATTTCTGTGT---TTCCCTTCAGTTTCCTATGAGCATGGCACTCTCCAGTGGACAAATGGTGGCCATTTTGAAGAGATTCCCAAACTGCTACCAGGTGATGGGGGAGGTAATTATGACT- i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42485522 149 + 51628933 GGTCTGGTCCCTCATCACCACATCTGGTTGGCCATTTCTGCTT---TTTCCTTCAGTTTCCTGTGAGCATGAATCTCCCCAAAGGACGAGTGGAGGTGATATTGAAGAGATCCATGAACTGCTGCCAGGCAATGGGGGAGGTAATTATGATT- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1042555 149 - 2169676 GGTCTGTTCCCTCATCGTCATGTCTAGTTGGTCATTTCTGCAT---TTCCCTTCAGTTTCCTGTGAGCACAAAGGTCTCCAAAGGACGAATGGAAGCAATTTGAAAGAGATACCTGAACTGCTACCAGGCGATGGGGGAGGTAATTATGATT- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865417 118 + 84719076 -------------------------------TCATTTCCTTGT---TTCTCTTCAGTGTCCTGTGATCCTGAAGCTCCCCAAAGGACCAACGAAGAAGAACCAGAGGACGTGCCCAGCCAGCAACTATGTGATGGAGAAGGTAATTGTGATT- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 I a score=6685.000000 s mm10.chr1_GL456221_random 117312 21 + 206961 TAGAACACAAAATAACTCACT s felCat5.chrC1 212418271 21 + 221441202 TAAATGGCCAATTACTTCATT i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42485671 21 + 51628933 TAAATGATCAATTACTTAATT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1042704 21 - 2169676 TAAATGACCAGTGACTTCATT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865535 21 + 84719076 TCAATTCCCATTTAACTAATT i equCab2.chr6 C 0 I 70125 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 3636210 4442 + 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4463 + 243199373 I e calJac3.chr6 146712927 6204 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 135242 74979 - 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 I a score=1954.000000 s mm10.chr1_GL456221_random 117333 8 + 206961 GATACTAT s felCat5.chrC1 212418292 8 + 221441202 AAATTTGT i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42485692 8 + 51628933 AAAATTAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1042725 8 - 2169676 AAATTTGT i ailMel1.GL192536.1 C 0 C 0 s dasNov3.JH581855 97245 8 - 513109 AATGCTCT i dasNov3.JH581855 n 74979 T 95202 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 3636210 4442 + 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4463 + 243199373 I e calJac3.chr6 146712927 6204 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 I a score=-191.000000 s mm10.chr1_GL456221_random 117341 10 + 206961 TTTCCTGCCT s felCat5.chrC1 212418300 10 + 221441202 TTGTCAGTCT i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42485700 10 + 51628933 TTGCCTGTCT i canFam3.chr25 C 0 I 1048 s ailMel1.GL192536.1 1042733 4 - 2169676 GTGT------ i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 3636210 4442 + 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4463 + 243199373 I e calJac3.chr6 146712927 6204 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 I a score=502.000000 s mm10.chr1_GL456221_random 117351 40 + 206961 TAATCCTTCTCTAATGACCATTTCTAaca---catacacacac---------- s felCat5.chrC1 212418310 47 + 221441202 ------GTATGCAAGGGACACTTCCTTCCCTTCTCCTGAACACAAATACACAC i felCat5.chrC1 C 0 I 895 s ailMel1.GL192536.1 1042737 40 - 2169676 CTGTCTGTATGCAAGGGACACTTCCTTCA---CTCCCAAACAC---------- i ailMel1.GL192536.1 C 0 C 0 e canFam3.chr25 42485710 1048 + 51628933 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 3636210 4442 + 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4463 + 243199373 I e calJac3.chr6 146712927 6204 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 I a score=610.000000 s mm10.chr1_GL456221_random 117391 10 + 206961 acacacacac s ailMel1.GL192536.1 1042777 10 - 2169676 AAATACACAC i ailMel1.GL192536.1 C 0 I 833 e canFam3.chr25 42485710 1048 + 51628933 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 3636210 4442 + 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4463 + 243199373 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212418357 895 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 117401 154 + 206961 acacgcgcgcgcacCTGCGCGAAAGCATATAGctatccatatatctaccaatctatccaactatatatacccatccacttactcacccacataccaatacaaacatctagctatccatatacctgccagtctatgctattcatctatctatgta e canFam3.chr25 42485710 1048 + 51628933 I e ailMel1.GL192536.1 1042787 833 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 3636210 4442 + 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4463 + 243199373 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212418357 895 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 29254203 0 - 121549591 I a score=829.000000 s mm10.chr1_GL456221_random 117555 16 + 206961 tctatctatgtgtcta s rn5.chr9 92365902 16 + 121549591 TCTATCTAGTTGTTca i rn5.chr9 T 5832 C 0 e canFam3.chr25 42485710 1048 + 51628933 I e ailMel1.GL192536.1 1042787 833 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e nomLeu2.GL397366 3636210 4442 + 6458163 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4463 + 243199373 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212418357 895 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=1007.000000 s mm10.chr1_GL456221_random 117571 8 + 206961 tctatgtg s rn5.chr9 92365918 8 + 121549591 tctatgta i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3640652 8 + 6458163 TTTATTTT i nomLeu2.GL397366 I 4442 C 0 e canFam3.chr25 42485710 1048 + 51628933 I e ailMel1.GL192536.1 1042787 833 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e panTro4.chr2B 235487582 4466 + 247518478 I e hg19.chr2 231106215 4463 + 243199373 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212418357 895 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=8729.000000 s mm10.chr1_GL456221_random 117579 31 + 206961 tctatgtatctatcgatgtatctatctatgt s rn5.chr9 92365926 31 + 121549591 tccatctatccatctatccaccaatccattc i rn5.chr9 C 0 C 0 s hg19.chr2 231110678 31 + 243199373 TTTATTTTTCTGTCAACATACAAAAACACCT i hg19.chr2 I 4463 C 0 s panTro4.chr2B 235492048 31 + 247518478 TTTATTTTTCTGTCAACATACAAAAACACCT i panTro4.chr2B I 4466 C 0 s nomLeu2.GL397366 3640660 23 + 6458163 --------TCTGTCTACCTACAAAAACACCT i nomLeu2.GL397366 C 0 I 8 e canFam3.chr25 42485710 1048 + 51628933 I e ailMel1.GL192536.1 1042787 833 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e gorGor3.chr2B 12300771 0 - 131632457 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212418357 895 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=15911.000000 s mm10.chr1_GL456221_random 117610 35 + 206961 atctatctatgtatctatctatgtatctatctatg s rn5.chr9 92365957 35 + 121549591 attcattcatgcaccaaatcacccatctagctatc i rn5.chr9 C 0 C 0 s hg19.chr2 231110709 35 + 243199373 ACTCTTTCATCTCCCTTCCCATTCCCccatctatt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492079 35 + 247518478 ACTCTTTCATCTCCCTTCCCATTCCCccatctatt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119443762 35 + 131632457 atctattcatgtattcatccatatatccatccatc i gorGor3.chr2B T 22133 C 0 s nomLeu2.GL397366 3640691 27 + 6458163 --------ATCTCCCTTCCCATTCCCccatctatt i nomLeu2.GL397366 I 8 C 0 e canFam3.chr25 42485710 1048 + 51628933 I e ailMel1.GL192536.1 1042787 833 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e rheMac3.chr12 12891473 0 - 106825570 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212418357 895 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=40460.000000 s mm10.chr1_GL456221_random 117645 51 + 206961 catctatctatca-tctatc----tatctatctatctatctatctatctatctat--c s rn5.chr9 92365992 54 + 121549591 catctatctgccagtctatg----cagctatccattcaattatccactcattcatTAC i rn5.chr9 C 0 C 0 s hg19.chr2 231110744 52 + 243199373 catgtattcatccatatatc----catccatccatccattcatccatccatccat--a i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492114 52 + 247518478 catgtattcatccatatatc----catccatccatccattcatccatccatccat--a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119443797 52 + 131632457 catccattcatccatccatc----catatatccatccatccatccatatattcat--c i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640718 48 + 6458163 catgtgttcattcatgtgtc--------tatccatccatccatccatccatccat--c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94043966 56 + 106825570 CACCTACTCTTTCATCTCCCTTCCCTTTCCCccatctattcatgtattcatccat--a i rheMac3.chr12 T 18462 C 0 e canFam3.chr25 42485710 1048 + 51628933 I e ailMel1.GL192536.1 1042787 833 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212418357 895 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=37567.000000 s mm10.chr1_GL456221_random 117696 42 + 206961 tatctatctatcta-------------tctaatatatcatcgatccatg--------cattca s rn5.chr9 92366046 42 + 121549591 TCTCCAAATAACAA-------------CATAAccatccatctgtctgcc--------agttga i rn5.chr9 C 0 C 0 s hg19.chr2 231110796 42 + 243199373 tatccatccatcca-------------tctgtatattcatctgtccatc--------catcca i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492166 42 + 247518478 tatccatccatcca-------------tccgtatattcatctgttcatc--------catcca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119443849 42 + 131632457 tgtccatccatcca-------------tccgtatattcatctgtccatc--------catcca i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640766 50 + 6458163 tatccatccatcca-------------tctgtgtatccatccatccatccatccagtcatcca i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044022 42 + 106825570 tatccatccatcta-------------ttcatatattcatccatccatc--------cagcca i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28811225 54 - 32117204 TGTCTAT-TATCTAATTAAGATTTATTTTCTTGTCTACACCTGTTTCTT--------CATCCC i otoGar3.GL873532 N 0 C 0 e canFam3.chr25 42485710 1048 + 51628933 I e ailMel1.GL192536.1 1042787 833 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212418357 895 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=37349.000000 s mm10.chr1_GL456221_random 117738 51 + 206961 ------------cccaactatccatcaa--------tctaaccacccattcaCTTCACTCCTCCTGATCCT-------- s rn5.chr9 92366088 59 + 121549591 ------------cccacctatctatctagctgtccttccaaccatccattcatTTCTGTCCTCCTGATCCT-------- i rn5.chr9 C 0 C 0 s hg19.chr2 231110838 29 + 243199373 ------------tccagccatccatcaa--------tccatgcatc----------------------cct-------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492208 29 + 247518478 ------------tccagccatccatcaa--------tccatgcatc----------------------cct-------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119443891 29 + 131632457 ------------tccatccatccatcaa--------tccatgcatc----------------------cct-------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640816 29 + 6458163 ------------tccagccatccatcca--------tccatgcatc----------------------cct-------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044064 29 + 106825570 ------------gccagccatccattca--------tccatgcatc----------------------cct-------- i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28811279 29 - 32117204 ------------TGTTCCCATCCATCCA--------TCCATTCATC----------------------CTC-------- i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1043620 49 - 2169676 CCCTATTCCCCTtccatccatccatcca--------tccatctatc----------------------cTCACATATTC i ailMel1.GL192536.1 I 833 C 0 e canFam3.chr25 42485710 1048 + 51628933 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212418357 895 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=-2378.000000 s mm10.chr1_GL456221_random 117789 1 + 206961 -C s rn5.chr9 92366147 1 + 121549591 -C i rn5.chr9 C 0 C 0 s hg19.chr2 231110867 1 + 243199373 -c i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492237 1 + 247518478 -c i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119443920 1 + 131632457 -c i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3640845 1 + 6458163 -c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044093 1 + 106825570 -c i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28811308 1 - 32117204 -A i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212419252 1 + 221441202 A- i felCat5.chrC1 I 895 I 1113 e canFam3.chr25 42485710 1048 + 51628933 I e ailMel1.GL192536.1 1043669 0 - 2169676 C e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e calJac3.chr6 146712927 6204 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=12996.000000 s mm10.chr1_GL456221_random 117790 11 + 206961 CCCATAGATGG s rn5.chr9 92366148 11 + 121549591 CCCAGAAATGA i rn5.chr9 C 0 C 0 s hg19.chr2 231110868 11 + 243199373 cCCACATACAG i hg19.chr2 C 0 I 6 s panTro4.chr2B 235492238 11 + 247518478 cCCACATACAG i panTro4.chr2B C 0 I 6 s gorGor3.chr2B 119443921 11 + 131632457 cCCACATACAG i gorGor3.chr2B C 0 I 6 s nomLeu2.GL397366 3640846 11 + 6458163 cCCACATACAG i nomLeu2.GL397366 C 0 I 6 s rheMac3.chr12 94044094 11 + 106825570 cCCACATATAG i rheMac3.chr12 C 0 I 6 s otoGar3.GL873532 28811309 7 - 32117204 CACACAC---- i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1043669 6 - 2169676 -----ACATAG i ailMel1.GL192536.1 C 0 C 0 e canFam3.chr25 42485710 1048 + 51628933 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_9369 14719 0 - 35067 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=341073.000000 s mm10.chr1_GL456221_random 117801 161 + 206961 ATAGATGATGTTCAATATTTG---AATTTTCTCAGGAGACACAAGCAG-TATTGAAGCTTCACGTCAGGGTGTTTGAGATCTGTCTTGAGTGTAGACCATACACCAAGAGAAGGAAGCTGAGAACTCTAGATGCAGCCAAGGA---TATTGAGTTATGAGT--GACAGT--G- s rn5.chr9 92366159 153 + 121549591 CTGGATTATGTCCA-CATTTG---AATTTTATCA---------AGCAG-AATAGAAGCCCGACTTGAGGCTGTTTGAGATTTTTCTTGAATATAGATCATACACCAAGAGAGGGAAGTTGTGAACTGTAGATGGAGCCATCAA---ATCTGAGTTCTGAGT--GATTGCTGG- i rn5.chr9 C 0 C 0 s hg19.chr2 231110885 169 + 243199373 ACAGTCTATGTCCAGCTTCTTCCTGCTTTCCTTAAGAGGCACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATAGGGAAAGAGAGAGAGAAAGAAAAATATAGTTTGAATCGTTAAATAAAGAGAGATCTGAGT--GATTGCCAG- i hg19.chr2 I 6 C 0 s panTro4.chr2B 235492255 169 + 247518478 ACAGTCTATGTCCAGCTTCTTCCTGCTTTCCTTAAGAGACACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATAGGGAAAGAGAGAGAGAAAGAAAAATATAGTTTGAATCGTTAAATAAAGAGAGATCTGAGT--GATTGCCAG- i panTro4.chr2B I 6 C 0 s gorGor3.chr2B 119443938 169 + 131632457 ACAGTCTATGTCCAGCTTCTTCCTGCTTTCCTTAAGAGACACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATAGGGAAAGAGAGAGAGAAAGAAAAATATAGTTTGAATCGTTAAATAAAGGGAGATCTGAGT--GATTGCCAG- i gorGor3.chr2B I 6 C 0 s nomLeu2.GL397366 3640863 169 + 6458163 ACAGTCTATGCCCAGCTTCTTCCTACTTTCCTTAAGAGACACAAGTAGCAAAAGAAGGATGAGCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACGTAGGGAAAGAGAGAGAGAAAGGAAAATATAATTTGAGTCATTAAATAAAGAGAGAGCTGAGT--GATTGCCAG- i nomLeu2.GL397366 I 6 C 0 s rheMac3.chr12 94044111 169 + 106825570 ACAGTCTATGCCCAGCTTCTTCCTGCTTTCCTTGAGAGAGACAAGTAGCAAAAGAAGGATGATCTCAGACTGGTTGGGGCTT-TCCTGCATATAGGACATAGGGAAAGAGAGAAGGAAAGGAAAATATAGATTGAATCATTAAATAAAGAGAGATCTGAGT--GACTGCCAG- i rheMac3.chr12 I 6 C 0 s tarSyr1.scaffold_175677 34 171 - 3989 ACAGACTGTGCCCAGCTTTTGCCTGCTTTCCTTGGGAGACACAAGCAGCAAATAAAAGATGAGTTCAGAATGGTTAGAGTTT-TCCTGCATATAGAACATACGCAAAGAGAGAGAGAATGGAGACCACAGTTGTAGTCATTCAATGAAGAGAGACTTGAGTAAAATTGCTAA- i tarSyr1.scaffold_175677 T 851 C 0 s otoGar3.GL873532 28811316 168 - 32117204 AGAGACTATACCTAGCCTCTGCCTGCATTCACTGGGAGATACAAACAGTAGAAGAAGGATGAGTTCATGTTGGTTGAAGTTT-TCCTGCACATA-AACATGGGCCAAGAGATGGAGACTGGAAAATATAGATGGAGTCATGAAATGAACAGAGGTTTGAAT--GAGTGCTGG- i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1043675 166 - 2169676 ACAAACTATGCCCAGAATTTGATTGCTTCCCTTGAGAGACACAAGCAG----TGAAGGATGATCTCAGACTGGTTGGGGTTT-CCCTGGGTATAGAACATAGACAAAGAAAGGGAGAATGAAAAATATAGATGGAGTCATGAAATGAAGAGAGACCAAAGT--GATTGACAAT i ailMel1.GL192536.1 C 0 C 0 e canFam3.chr25 42485710 1048 + 51628933 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 17865556 70125 + 84719076 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=391091.000000 s mm10.chr1_GL456221_random 117962 170 + 206961 TTTCACCTAACTAGACATGGAGTCCTAATGTCAGCAT------------------------------TTGGGGTACACT------------------------ACCAAAGAGCA--CTGGTCCCCTTCAGCCACTTTTCC--ATGGTTGGGACAGGAGTGTGGACATGATGAATAAA--------ATGGAAGCTGAG------CCTGGGAAAGACTTCTGAGGAGAACCTGGGAAGGGGATG s rn5.chr9 92366312 177 + 121549591 TCTTAACAGACTAGACATGGAGTTCTAATGTCACCAT------------------------------TTGGGGTACACT------------------------ATCAAGAAGTG--CTGATCTCCTTGAGCCGTTTCCCCC-ATGGTTGGGTCAAGAGTGTGGACTTGATGAATAAA--------GCAGAAACTGAGGAAACTCCTGGGTAAGACTTTTGAAGAGGACTTGGGAAGGGAATG i rn5.chr9 C 0 C 0 s hg19.chr2 231111054 229 + 243199373 TTTTACCTCAATAGTTGTGGGATCCAAATATTACCACGTTGGGTAACATTTGGGTAATATTACCACATTGGGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGGG--GAGATAATTTTCAACTTATTTTCTC-GAGGTTATGCCAACAGCATGGATATAATGAGTATA--------TTGCAATAT-AGAAAACTCA-GTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAG i hg19.chr2 C 0 I 7 s panTro4.chr2B 235492424 200 + 247518478 TTTTACCTAAATAGTTGTGGGATCCAAATATTACCACG-----------------------------TTGGGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGGG--GAGATAATTTTCAACTTATTTTCTC-GAGGTTATGCCAACAGCATGGATATAATGAGTATA--------TTGCAATAT-AGAAAACTCA-GTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAG i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 119444107 200 + 131632457 TTTTACCTAAATAGTTGTGGGATCCAAATATTACCACG-----------------------------TTGGGTAACATTTGGGTAATATTACCACATTGGGTTATAAGGAAGGG--GAGATAATTTTCAACTTATTTTCTC-AAGGTTATGCCAACAGCATGGATATAATGAGTATA--------TTGCAATAT-AGAAAACTCA-GTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAG i gorGor3.chr2B C 0 I 7 s nomLeu2.GL397366 3641032 200 + 6458163 TTTTACCTAAATAGTTGTGGGATCCAAATATTACCATG-----------------------------TTGGGTAATATTTGGGTAATAATACCACATTGGGTTATAAGGAAGGG--GAGATAATTTTCAACTTGTTTTCTC-GAGGTTATGCCAAGAGCATGGATATAGTGAGTATA--------TTGCAATAT-AGAAAACTCA-GTGAAAGACTGTTGAAATGAACTTCACAAAGGGAAG i nomLeu2.GL397366 C 0 I 7 s rheMac3.chr12 94044280 200 + 106825570 TTTTACCTAAATAGTCATGGGATTCAAATATTACCATG-----------------------------TTGGGTAATATTTGGGTAATAATACCACATTGGGTTATAAGGAAGGG--GAGATAATTTTCAACTTATTTTCTC-AAGGTTATGCCAAGAGCATGGATATAATGAGTATA--------TTGCAATAT-AGAAAACTCA-GTGAAAAACTGTTGAAATGAGCTTCACAAAGGGAAG i rheMac3.chr12 C 0 I 7 s tarSyr1.scaffold_175677 205 175 - 3989 TTTTACTTAAATAGACATGGAATTCCAAAATCACTAGG-----------------------------TTG------------------------CGATGTGTTACCAGGAAGAG--AAGATGATTTTCAACTCACTTTCCC-AGGATTATGCTATGAATATAAACATAATAAAGACA--------CTGCTATAT-AGAAAATGCA--TGTGAAATCTTTTAGATGTACCTGGCAGGGGAAAG i tarSyr1.scaffold_175677 C 0 I 7 s otoGar3.GL873532 28811484 191 - 32117204 TTTAACCTAAATAGTCATGGAATCCAAATAT---CAGA-----------------------------TTGGAATGTGTT-----------------ATGTGTTATTAGGCAGGGAAGAGATAATTTCTACCCTACTTCCCC-AAGGTTGTGAGAAGAATGTGGGCACAATGAATATGTCTATATCTTGCACTAT-AGAAAACTCATGCAAAAGACTTTTGAGAGGGATCTGATAAGGGGAAG i otoGar3.GL873532 C 0 I 7 s canFam3.chr25 42486758 178 + 51628933 TTCTACTTAAATAGACATGGAATCTAAATATAACCAAG-----------------------------CTGG------------------------ACTGTGTTATCAGGGAGGG--GAGATAATTTTCAACCTATTTTCCCTGAGGTTGTGCCAGGAACATGGGCATAATGAGTATA-------ATTGCAATAC-AGAGAACTCATGTGAAAAGAGTTTGAATTCGA-CTGGCAAAGGGAAG i canFam3.chr25 I 1048 C 0 s ailMel1.GL192536.1 1043841 168 - 2169676 -TCTACTTAAATAGACATGAAGTCTAAATATAACCA---------------------------------------------------------------TGTTGTCAGGGAGGG--GAGATCATTTCCTACCTATTTTCCCTAAGGTTGTGCCAGGAACATGGGCATAATGGGTATA-------ATTGCAGCAC-AGAGAACTCATGTGAAAGAGTTTTGAAACGGACCTGGCAAAGGGAAG i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 17865556 70125 + 84719076 I e calJac3.chr6 146712927 6204 + 158406734 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=250550.000000 s mm10.chr1_GL456221_random 118132 98 + 206961 -------TCCTCTTTATCCACAGTGAACAGAGA---CATCTATGATAGGAAAGGATGATGA--------G-CAGAACACA-C----AGAAAGGGAGAAGAGGAGA---------------------------------CATTTAGATTCAACTTC s rn5.chr9 92366489 89 + 121549591 -------TCCTCTTTGTCCACAGTGAACAGAGA---CTTTCATGATATGAAAGGACAGTGA--------C-CAGAA--------------AGGGAGGAGATGATA---------------------------------TGCTTAGATTCAACTCT i rn5.chr9 C 0 C 0 s hg19.chr2 231111290 102 + 243199373 -------GCCCCTTTGTTAATGGCAAAAGATGAGGCCTTTGATACTATGGCAGAAAAATAA--------GACAGAATATA-C----AGAAAGACTGAAGTTTAAA---------------------------------TTTTTAGATTTAAATTT i hg19.chr2 I 7 C 0 s panTro4.chr2B 235492631 102 + 247518478 -------GCCCCTTTGTTAATGGCAAAAGATAAGACCTTTGATACTATGGGAGAAAAATAA--------GACAGAATATA-C----AGAAAGACTGAAATTTAAA---------------------------------TTTTTAGATTTAAATTT i panTro4.chr2B I 7 C 0 s gorGor3.chr2B 119444314 102 + 131632457 -------GCCCCTTTGTTAATGGCAAAAGATGAGACCTTTGATACTATGGGAGAAAAATAA--------GACAGAATATA-C----AGAAAGACTGAAATTTAAA---------------------------------TTTTTAGATTTAAATTT i gorGor3.chr2B I 7 C 0 s nomLeu2.GL397366 3641239 101 + 6458163 -------G-CCCTTTGTTAATGGCAAAAGATGACACCTTTGATGGTATAGGAGAAAAATAA--------GACAGAATATA-C----AGAAAGACTGAAATTTAAA---------------------------------TTTTTAGATTTAAATTT i nomLeu2.GL397366 I 7 C 0 s rheMac3.chr12 94044487 98 + 106825570 -------GCCCCTTTGTTAATGGCAAAAGATGAGACCTTTGATGGTATGGGAGAAAAATAA--------GACAGAATATA-C----AGAAAGACTGaaatttaaa------------------------------------ttaaaattaaa-tt i rheMac3.chr12 I 7 C 0 s calJac3.chr6 146719131 102 + 158406734 -------TTCCCTTTGTTAATAACAAAAGATGAGACCTTTGATGGTATGGGAGAAAAATAA--------GACAGAATATA-C----AGAAAAACTGAAATTTAAA---------------------------------TTTTTACATTTAAATTT i calJac3.chr6 I 6204 C 0 s tarSyr1.scaffold_175677 387 139 - 3989 -------GCTCCTTTGCCAGTGGCGAAAGGTGAGCCCTTTGATGATATGGGAGAAAGACAA--------GACAGACTATA-TAGAAAGAAAGACTAAAATTTAAATCTAAACATTAAAATGGAAACAGttaaaaataatttttaagttaaaattt i tarSyr1.scaffold_175677 I 7 C 0 s otoGar3.GL873532 28811682 103 - 32117204 -------GCTCCTTTGTCACCTGCAAAAGACTAGACCTTTAGTGGTAGGGGAGAAAGATGA--------GACAGAATATATC----AGAAAGACTGAAATTTGaa---------------------------------ttattatatttaaattt i otoGar3.GL873532 I 7 C 0 s canFam3.chr25 42486936 117 + 51628933 GATCCTTGCTCATTTGCCAATGGCCACAGTCCAGAGCATTGATAATATGGGCGGAGGAATAGGGATATGGATGAAATACG-C----AGAAAGTCTGAAATTTAAA---------------------------------TTTTTAGTTTTAATTCT i canFam3.chr25 C 0 I 3 s ailMel1.GL192536.1 1044009 117 - 2169676 GATCCTTGATCATTTGCCAATGACCACAGTCCAGAACATTGGTGATATGGGAAAAGGAATATGGACGCGGATGAAATATG-C----AGAAAGTCTGAAATTTAAA---------------------------------TTTTGAGTTTTAATTCT i ailMel1.GL192536.1 C 0 I 3 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH490333 45982 5 + 53618 I e equCab2.chr6 17865556 70125 + 84719076 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=-14008.000000 s mm10.chr1_GL456221_random 118230 1 + 206961 -A s rn5.chr9 92366578 1 + 121549591 -G i rn5.chr9 C 0 C 0 s hg19.chr2 231111392 1 + 243199373 -T i hg19.chr2 C 0 I 3 s panTro4.chr2B 235492733 1 + 247518478 -T i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119444416 1 + 131632457 -T i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 3641340 1 + 6458163 -T i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94044585 1 + 106825570 -g i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146719233 1 + 158406734 -T i calJac3.chr6 C 0 I 3 s tarSyr1.scaffold_175677 526 1 - 3989 -t i tarSyr1.scaffold_175677 C 0 I 58 s otoGar3.GL873532 28811785 1 - 32117204 -t i otoGar3.GL873532 C 0 I 3 s turTru2.JH478086 129084 1 - 138096 G- i turTru2.JH478086 T 3932 I 6546 s canFam3.chr25 42487056 1 + 51628933 G- i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1044129 1 - 2169676 G- i ailMel1.GL192536.1 I 3 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e equCab2.chr6 17865556 70125 + 84719076 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=459122.000000 s mm10.chr1_GL456221_random 118231 200 + 206961 TGGGAAA-ACCAGGAACAGCAAGCT---TACCAAAGAGACCGGACTGAGCTGGGGAAATGAGTGCTATGGGGG-AAAGGGCTAGGCTCACTTACACCACGAGGTGCAGAGTAG--AATATGTGGAGAAGATT---ATAT----------------AAAACAGAGATGCTAATAGACAATGTAAAGCACTCATGAGCCCTACACACAGAGAAA-AAAGTGAAGAAGAG s rn5.chr9 92366579 196 + 121549591 TTGGAAATATCAGGAACAACAAGCT---AACTAAAGAGAACAGACCGAGCTGGGGAAATGAATGCAATGGGGGGAAAGTGCTAGGCTCACTTATAAAATGAGGTGCAGAGCTT--AATATGTGGAGAAAATT---ATAT----------------AAAGGCAAGATGCTAGTAGACAGTGTAAAGCACTCATCAGCCCTAC------AGAGA-ACAGAGAAGGAGAA i rn5.chr9 C 0 C 0 s hg19.chr2 231111396 182 + 243199373 TTGAAAA-ATTAGGAACAGAAAGCT---AATTAGAGAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAATATGGCACAGGAATT--AAAAGGTGGAGAAAATA---CTGT---GAGAGGAACAGAGAGAAGAAAAATGCTCGAAGACAG--------------------------------AG-ACAGTGGAGGAGAG i hg19.chr2 I 3 I 1 s panTro4.chr2B 235492737 182 + 247518478 TTGAAAA-ATTAGGAACAGAAAGCT---AATTAGAGAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAATATGGCACAGGAATT--AAAAGGTGGAGAAAATA---CTGT---GAGAGGAACAGAGAGAAGAAAAATGCTCGAAGACAG--------------------------------AG-ACAGTGGAGGAGAG i panTro4.chr2B I 3 I 35 s gorGor3.chr2B 119444420 182 + 131632457 TTGAAAA-ATTAGGAACAGAAAGCT---AATTAGAGAGAACAGATAGAGGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAGTATGGCACAGGAATT--AAAAGGTGGAGAAAATA---CTGT---GAGAGGAACAGAGAGAAGAAAAATGCTCAAAGACAG--------------------------------AG-ACAGTGGAGGAGAG i gorGor3.chr2B I 3 I 30 s nomLeu2.GL397366 3641344 182 + 6458163 TTGAAAA-ATTAGGAACAGAAAGCT---AATTAGAGAGAACAGATAGATGCATGGAAATGAGCACCATGGAAGAAAGGAGATAAGCTTGATTATTAAATAAGGCACAGGACTT--AAAAGGTGGAGAAAATA---TTAT---GAGAGGAACAGAGAGAAGAAAAGTGCTCCGAGACAG--------------------------------AG-ACAGTGGAGGAGAG i nomLeu2.GL397366 I 3 I 39 s rheMac3.chr12 94044589 182 + 106825570 ttgaaaa-attaGGAACAGAAAGCT---AATTAGAGAGAACAGATATAGGCATGGAAATGAGCACCATGGAAGAAAGGAGGTAAACTTGATTATTAAATAAGGCACAGGACTT--AAAAGGTGGAGAAAATA---TTAT---GAGAGGAACAGAGAGAAGAAAAATGCTCGAAGACAG--------------------------------AG-ACAGTGGAGGAGAG i rheMac3.chr12 I 3 I 39 s calJac3.chr6 146719237 182 + 158406734 TTGAAAA-ATTAGGAACAGAAAGCT---AACTAGAGAGAACAGATAGAGGCATGGAAATGAGCACCATGGAGGAAAGGAGATAAGCTTGATTATTAAATAAGGTACAGGATTT--AAAATGTGAAGAAAATA---TTAT---GAGAGGAACAGAGAGAAGAAAAATGCTAGAAAACAG--------------------------------AG-ACAGTGGGGGAGAG i calJac3.chr6 I 3 I 39 s tarSyr1.scaffold_175677 585 184 - 3989 TTGAAAA-CTTACAGAC--AAATTT---ATCTAGAGAAAACAGATAGAGGCAGGGAAACGAGCACCCTGGAAGAAAGGAAATAAGCTCAATCATCAAACCAGGTCCAGAATTTTAAAAATGTAGAAAAAATA---ATATCAAGAGAAAAAGAGAGAGAAGGAAAATGCTAAAAGACAA--------------------------------AG-TCAATGG-GGAGAG i tarSyr1.scaffold_175677 I 58 I 19 s otoGar3.GL873532 28811789 140 - 32117204 TTAAAAA-ATTAG------AAAATT---AGC-AGTGAGAATAGTTAGAGGCAGGGAAATGAGCACCAGGGAAGAAAGGAGATAAGCTTGATGCTAAGAT---GCAGAGTA-TT--AAAAGGCAGAGAAAATGATCTTAT---GAGAGACACAGAGAAAAA------------------------------------------------------------------- i otoGar3.GL873532 I 3 C 0 s canFam3.chr25 42487057 150 + 51628933 TTGAAAA-ATGAGAAACAGAAAGTTAGGAACTAGAGAGAACAGATAGAAGCAGGAACATGAGCACCATGGAAGAAAGGAGGTAAACCCCATAACC---------------TTA--GATAGGTAGAGAACATG---ATGT---------------TAAGTAAGAAATG--------CAG--------------------------------AG-AGAGGTGGGGAGGG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1044130 151 - 2169676 TTGAAAA-ATTAGAAACAGAAAGTTAAGAACTAGAGAGAACAGATAGAAGCAGGGAAATCAACACCATGGAAGAAAGGAGATAAGCTCCGTCATC---------------TTA--GACAGGTAGAGAACATG---GTGG---------------TAAGAGAGAACTG--------CAG--------------------------------GGCAGTGTTGGGCGGGG i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17865556 70125 + 84719076 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=187.000000 s mm10.chr1_GL456221_random 118431 1 + 206961 G s rn5.chr9 92366775 1 + 121549591 A i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_175677 788 1 - 3989 A i tarSyr1.scaffold_175677 I 19 I 1 s canFam3.chr25 42487207 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1044281 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 e otoGar3.GL873532 28811929 0 - 32117204 C e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94044771 39 + 106825570 I e equCab2.chr6 17865556 70125 + 84719076 I e nomLeu2.GL397366 3641526 39 + 6458163 I e gorGor3.chr2B 119444602 30 + 131632457 I e panTro4.chr2B 235492919 35 + 247518478 I e hg19.chr2 231111578 1 + 243199373 I e calJac3.chr6 146719419 39 + 158406734 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=4463.000000 s mm10.chr1_GL456221_random 118432 17 + 206961 GAATTAAAAACCAG-TAG s rn5.chr9 92366776 18 + 121549591 GAACTAAAAACCAGTTAG i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3641565 17 + 6458163 AAGTGAAAAGTTAG-CAG i nomLeu2.GL397366 I 39 C 0 s rheMac3.chr12 94044810 17 + 106825570 AAGTGAAAAGTTAG-CAG i rheMac3.chr12 I 39 C 0 s calJac3.chr6 146719458 17 + 158406734 AAGTGAAAAGTTAG-CAG i calJac3.chr6 I 39 C 0 s tarSyr1.scaffold_175677 790 8 - 3989 AAATAAGA---------- i tarSyr1.scaffold_175677 I 1 C 0 s otoGar3.GL873532 28811929 14 - 32117204 ---TAAAATGCCAA-CAG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42487208 17 + 51628933 ACACTAAGAAACAG-AAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1044282 17 - 2169676 GCATTAAGAAAAAG-AAA i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17865556 70125 + 84719076 I e gorGor3.chr2B 119444602 30 + 131632457 I e panTro4.chr2B 235492919 35 + 247518478 I e hg19.chr2 231111578 1 + 243199373 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=-31621.000000 s mm10.chr1_GL456221_random 118449 79 + 206961 GAAGCCAGTtaaatgacacttgctgccaagcctgttggcctgagtctgctccctgggactcacatttatacaggagagg s rn5.chr9 92366794 77 + 121549591 GAGGCCTGATAAGTAGCACTTGCTGTCATGCCAAATGACTTGCGTTTGCTCCCTGGGGCTCACATC--TAAAGAAGAGG i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3641582 26 + 6458163 ---------AGAGTGAAAACTGCT--------------------------------------------TGCAAGAGATG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044827 26 + 106825570 ---------AGAGTGAAAACTGCT--------------------------------------------TGCAAGAGATG i rheMac3.chr12 C 0 C 0 s tarSyr1.scaffold_175677 798 9 - 3989 -------TAAAGGTGA--------------------------------------------------------------- i tarSyr1.scaffold_175677 C 0 C 0 s otoGar3.GL873532 28811943 21 - 32117204 ---ACAGGAACAGTGG-------------------------------------------------------AGGAGAGG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42487225 11 + 51628933 -------------------------------------------------------------------GGATGGGAG-GG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1044299 12 - 2169676 -------------------------------------------------------------------GGGTGGGGGAGG i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17865556 70125 + 84719076 I e gorGor3.chr2B 119444602 30 + 131632457 I e panTro4.chr2B 235492919 35 + 247518478 I e hg19.chr2 231111578 1 + 243199373 I e calJac3.chr6 146719475 0 + 158406734 C e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=39.000000 s mm10.chr1_GL456221_random 118528 14 + 206961 gctgattcctgtaa s rn5.chr9 92366871 14 + 121549591 GCTGATTCCTATAA i rn5.chr9 C 0 C 0 s otoGar3.GL873532 28811964 7 - 32117204 GATGAAG------- i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42487236 0 + 51628933 C e ailMel1.GL192536.1 1044311 0 - 2169676 C e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94044853 0 + 106825570 C e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_175677 807 0 - 3989 C e nomLeu2.GL397366 3641608 0 + 6458163 C e gorGor3.chr2B 119444602 30 + 131632457 I e panTro4.chr2B 235492919 35 + 247518478 I e hg19.chr2 231111578 1 + 243199373 I e calJac3.chr6 146719475 0 + 158406734 C e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I a score=-8861.000000 s mm10.chr1_GL456221_random 118542 52 + 206961 gttttcttctgacttctacatgtgtgtcatggtatgtgAGAAACTCTCCCAC s tarSyr1.scaffold_175677 807 7 - 3989 -------------------ATGCGTG-------------------------- i tarSyr1.scaffold_175677 C 0 C 0 s otoGar3.GL873532 28811971 21 - 32117204 GTT----------------ATGCACA--------GATGAAAATCT------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42487236 12 + 51628933 --------------------GGCATA-------------GAAATT------- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1044311 12 - 2169676 --------------------GGCACA-------------GAAGTT------- i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94044853 0 + 106825570 C e equCab2.chr6 17865556 70125 + 84719076 I e nomLeu2.GL397366 3641608 0 + 6458163 C e gorGor3.chr2B 119444602 30 + 131632457 I e panTro4.chr2B 235492919 35 + 247518478 I e hg19.chr2 231111578 1 + 243199373 I e calJac3.chr6 146719475 0 + 158406734 C e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=86.000000 s mm10.chr1_GL456221_random 118594 3 + 206961 CCC s hg19.chr2 231111579 3 + 243199373 CAC i hg19.chr2 I 1 I 1 e otoGar3.GL873532 28811992 0 - 32117204 C e canFam3.chr25 42487248 0 + 51628933 C e ailMel1.GL192536.1 1044323 0 - 2169676 C e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94044853 0 + 106825570 C e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_175677 814 0 - 3989 C e nomLeu2.GL397366 3641608 0 + 6458163 C e gorGor3.chr2B 119444602 30 + 131632457 I e panTro4.chr2B 235492919 35 + 247518478 I e calJac3.chr6 146719475 0 + 158406734 C e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=189.000000 s mm10.chr1_GL456221_random 118597 5 + 206961 AAAAT s hg19.chr2 231111583 4 + 243199373 AAAG- i hg19.chr2 I 1 C 0 s gorGor3.chr2B 119444632 4 + 131632457 AAGG- i gorGor3.chr2B I 30 I 1 s otoGar3.GL873532 28811992 4 - 32117204 AAAG- i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42487248 0 + 51628933 C e ailMel1.GL192536.1 1044323 0 - 2169676 C e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94044853 0 + 106825570 C e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_175677 814 0 - 3989 C e nomLeu2.GL397366 3641608 0 + 6458163 C e panTro4.chr2B 235492919 35 + 247518478 I e calJac3.chr6 146719475 0 + 158406734 C e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=-19180.000000 s mm10.chr1_GL456221_random 118602 32 + 206961 GAATATATCAACAAG------CAGCAGCAGCAGCAACA s hg19.chr2 231111587 29 + 243199373 TTGTACACAGAGAAA------AAGAGAAAGG---AGAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492954 3 + 247518478 -----------------------------------GAA i panTro4.chr2B I 35 C 0 s gorGor3.chr2B 119444637 3 + 131632457 -----------------------------------GAA i gorGor3.chr2B I 1 C 0 s otoGar3.GL873532 28811996 21 - 32117204 ---------GAGAAT------GAGAAAAAGT--CAGCA i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42487248 26 + 51628933 --ATACATTGAGAAAAAGCACAAGGAAA---------- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1044323 20 - 2169676 --ATACATCGAGAAA------AAGGAGA---------- i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94044853 0 + 106825570 C e equCab2.chr6 17865556 70125 + 84719076 I e tarSyr1.scaffold_175677 814 0 - 3989 C e nomLeu2.GL397366 3641608 0 + 6458163 C e calJac3.chr6 146719475 0 + 158406734 C e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=-1142.000000 s mm10.chr1_GL456221_random 118634 43 + 206961 ACAGTAAAAATAACAATAAGTTGAG-AGCAAATCTTATCT--TCTG-- s hg19.chr2 231111616 32 + 243199373 TAAGTGAAGTTAGCA-------GAG-AGTGAA----AACT--GCTT-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235492957 32 + 247518478 TAAGTGAAGTTAGCA-------GAG-AGTGAA----AACT--GCTT-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444640 32 + 131632457 TAAGTGAAGTTAGCA-------GAG-AGTGAA----AACT--GCTT-- i gorGor3.chr2B C 0 C 0 s calJac3.chr6 146719475 16 + 158406734 -----------------------AG-AGTAAA----AACT--GCTG-- i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_175677 814 28 - 3989 ----AAAAGTCAGTA-------GAG-GGTGCA----ATCT--GTTT-- i tarSyr1.scaffold_175677 C 0 C 0 s otoGar3.GL873532 28812018 16 - 32117204 -----------------------AG-CATGAA----AACT--GGTT-- i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42487274 36 + 51628933 TGAGTGAAAATTCAG-------CAG-GATGAA----CACTGGGTACCA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1044343 35 - 2169676 TGAGTGAAAATTCAG-------CAGAGGTAAA----TACT--GTACGA i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94044853 0 + 106825570 C e equCab2.chr6 17865556 70125 + 84719076 I e nomLeu2.GL397366 3641608 0 + 6458163 C e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=17776.000000 s mm10.chr1_GL456221_random 118677 8 + 206961 GGAAGGGA s hg19.chr2 231111648 8 + 243199373 GCAAGAGA i hg19.chr2 C 0 I 2 s panTro4.chr2B 235492989 8 + 247518478 GCAAGAGA i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119444672 8 + 131632457 GCAAGAGA i gorGor3.chr2B C 0 I 2 s calJac3.chr6 146719491 8 + 158406734 GAAAGGGA i calJac3.chr6 C 0 I 2 s tarSyr1.scaffold_175677 842 8 - 3989 GTAAGGAA i tarSyr1.scaffold_175677 C 0 I 4 s otoGar3.GL873532 28812034 8 - 32117204 GCAAGGGA i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42487310 8 + 51628933 GGGATAGA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1044378 8 - 2169676 GGGATAGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17935681 8 + 84719076 GGGAGAGA i equCab2.chr6 I 70125 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94044853 0 + 106825570 C e nomLeu2.GL397366 3641608 0 + 6458163 C e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=142984.000000 s mm10.chr1_GL456221_random 118685 42 + 206961 GGAAACAGTTT-GAGACTTTGGAGGGAAGGAGCTAGGA-------GCTGA s hg19.chr2 231111658 49 + 243199373 GGGAACAATAT-GGGACATTGTAGGGATGGAGGGAAGATTCACTAGACAG i hg19.chr2 I 2 C 0 s panTro4.chr2B 235492999 49 + 247518478 GGGAACAATAT-GGGACATTGTAGGGCTGGAGGGAAGATTCACTAGACAG i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119444682 49 + 131632457 GGGAACAATAT-GGGACATTGTAGGGATGGAGGGAAGATTCACTAGACAG i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 3641608 49 + 6458163 GGGAACAATAT-GGAACATTGTAGGGATGGAGGGAAGATTCACTGGACAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044853 49 + 106825570 GGGAACAATGT-GGGACATTGTAGGGATGGAGAGAAGATTCACTAGACAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146719501 49 + 158406734 GGGAAAAACAT-GGGACATTATAGGGATTGAGGCAAGATTCACTAGACAG i calJac3.chr6 I 2 C 0 s tarSyr1.scaffold_175677 854 47 - 3989 --GAACGGTTT-GGGACATTGTAGGGATTGTGGGAAGAATCACTGGACAG i tarSyr1.scaffold_175677 I 4 C 0 s otoGar3.GL873532 28812044 49 - 32117204 GAGACCAGTTT-GGGACATTGTACAGATTGAGGGAAAAGTCACTATACAG i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42487318 50 + 51628933 GAAGACAGTTTGGGGACATTGTAGGAATTGAGACAAGAGTCATTCGTCAG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1044386 49 - 2169676 GAAGACAGTTT-GGGACACTGTAGGAATTGAGAGAAGAGTTGTTCATTGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17935689 47 + 84719076 GGAGAGAGATG-GAGAAATTGTGGAA--TGTGAAAAATATCCTGAGACAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH581855 97253 95202 - 513109 T e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=381366.000000 s mm10.chr1_GL456221_random 118727 119 + 206961 AAGCAACTTCTGGCC-CAAGGC--GAT--TACATCAGCTGTGGG-TTTTCAGACTGTGGTGCCCCCAA-CTCTCAAAGTGGCA-TTGGAAAACATGCAGG-GACAATCAGTCTCTCCC--AGTCATTCTT s hg19.chr2 231111707 125 + 243199373 AAATAACTTCTGGCC-CAAGAATGAGA--CATGTTAGCAGCGAG-TTTTCACATTATGGTGTCCCCAGCCTATCAAAATGGCACCTGTAATGTCCTCAGA-GGCAGTCGACCTCCCCCTGAGGCtttcat i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493048 125 + 247518478 GAATAACTTCTGGCC-CAAGAATGAGA--CATGTTAGCAGCGAG-TTTTCACATTATGGTGTCCCCAAGCTATCAAAATGGCACCTGTAATGTCCTCAGA-GGCAGTCGACCTCCCCCTGAGGCtttcat i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444731 125 + 131632457 AAATAACTTCTGGCC-CCAGAATGAGA--CATGTTAGCAGCGAG-TTTTCACATTATGGTGTCCCCAAGCTATCAAAATGGCACCTGTAATGTCCTCAGA-GGCAGTCGACCTCCCCCTGAGGCtttcat i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3641657 125 + 6458163 AAATAACTTCTGGCC-CAAGAATGAGA--CATGTTAGCAGCGAG-TTTTCACATTATGGTATCCCCAAGCTATCAAAATGGCACCTGTAATGTCCTCAGA-GGCAGTCGACCTCCCCCTGAGGCTTTCAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94044902 123 + 106825570 AAATAATTTCTGGCC-CAAGAATGAGA--CATGTTAGCAGTGAG-TTTTCACG--AGGGTGTTCCCAAGCTATCAAAATGGCACCTGTAATGTCCTCAGA-AGCAGTCAGCCTCTCCCTGAGGCTTTCAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146719550 123 + 158406734 AAATAACTTCTGGCC-CAAGAATGGAA--CATGTTAGCAGTGAG-TTTTAGC-TTATGATGTCCCCAGCCTATCAAAATGGCACCTGTAATGTCCTCAGA-GGCAGTTGACTTCCCCCC-AGGCTTTCAT i calJac3.chr6 C 0 C 0 s tarSyr1.scaffold_175677 901 121 - 3989 AGACGAGTTCTGGCC-GAAGGATGAAG--CATGTTAGCAGTGAG-TTTTCAGATTATGGTGTCCCCAAA-TATCAAAGTGGCACCTGTAGTATCCTCCAA-GGTAATCAACCTGCC---AAGGCATTCTT i tarSyr1.scaffold_175677 C 0 N 0 s otoGar3.GL873532 28812093 124 - 32117204 AAACAATTTCTAGCC-TAAGGACAAAC--CATATTAGCAGAGAA-TTTTCTGATTATGGTG-ACTCAGATGATCAATGTGGCACCTGTAATATCCTCAGA-GGCAATCATCCTCTCCCCCAGGCATTCTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42487368 123 + 51628933 AAACAAG-TCTGCCAGTAAGGGTGGAA--CATGCTAGCCATGAG-TTTTCAGGTTATGATGTCTCCAG-TTATCAACATAACACCTACAATATTCTCAGA-GGCAGTGGGCCCCCCCCC-AGGCATCCTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1044435 123 - 2169676 AAACAAG-ACTGCCAGTAGGGGTGGAA--CATGTTAGCCATGGG-TTTTCAAGTTATGGTGTCCCCAG-TTATCAACATGGCACCTGTAATATTCTCAGA-GGCAGTGGTCCTCCCCCC-AGGCATCCTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17935736 124 + 84719076 AAGCAAC-TTTGTCA-CAAGGTTGTTATTCACAGTAGCAGTGAG-TTTTCAGGGTAAGTTGTCCCCAG-GAGTCAAAGTGGCCCCTGTAACTCACCCAGATTACAAGAGACctcacccc-aggcat-ttt i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1801590 106 + 1805508 AAGCAACCTCTGGCA-CAAGGA--GCA--TTTCTCCGTAGTGGATTTTTCAGATGAAGGGGTCCCCAG-ATATCAGACTGGCACT----------------GGTAATCATCCTCTCCC--AAGTAGTATC i dasNov3.JH566347 I 56161 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=95421.000000 s mm10.chr1_GL456221_random 118846 34 + 206961 ATCTGTTC---------------CC-ATCTGTAAGTTAATGATCCCCAA-A s hg19.chr2 231111832 33 + 243199373 gtct-ctc---------------cc-atctataacttaatgatttcaaa-a i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493173 33 + 247518478 gtct-ctc---------------cc-atctataacttaatgatttcaaa-a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444856 33 + 131632457 gtct-ctc---------------cc-atctataacttaatgatttcaaa-a i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3641782 33 + 6458163 GTCT-CTC---------------CC-ATCTATAACTTAATGATTTCAAA-A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045025 33 + 106825570 GTCT-CTC---------------CC-ATCTATAACTTAATGATTTCAAA-A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146719673 33 + 158406734 GTCT-CTC---------------CC-ATCCGTACCTTAATGATTTCAAA-A i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28812217 34 - 32117204 GTCT-GTC---------------CCTACCTATAACTTAATGACTTCAAA-A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42487491 34 + 51628933 GTCTGCTC---------------CC-ATCTATAATTT-ATGATCCCCAACA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1044558 33 - 2169676 GTCTGCTC---------------CC-TTCTGTAACTT-ATGATCCCCAA-A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17935860 49 + 84719076 atccactcttatgccttcaatcacc-atacacaacctaatggttcctaa-a i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1801696 31 + 1805508 -GCTGCTC---------------TC-A--Cataccctaatgatgctcaa-a i dasNov3.JH566347 C 0 I 1123 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=-2763.000000 s mm10.chr1_GL456221_random 118880 10 + 206961 CATGAAC-TTC s hg19.chr2 231111865 11 + 243199373 cacatatgtcc i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493206 11 + 247518478 cagatatgtcc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444889 11 + 131632457 cacacatatcc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3641815 11 + 6458163 CACATATGTCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045058 11 + 106825570 CACAGATGTCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146719706 11 + 158406734 CACATGTGTCC i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28812251 9 - 32117204 C--ATGTGTTC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42487525 10 + 51628933 CCTTTGTCAG- i canFam3.chr25 C 0 I 4 s ailMel1.GL192536.1 1044591 10 - 2169676 CACCTGTCTG- i ailMel1.GL192536.1 C 0 I 4 s equCab2.chr6 17935909 10 + 84719076 catgcatctc- i equCab2.chr6 C 0 T 70497 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=109976.000000 s mm10.chr1_GL456221_random 118890 54 + 206961 ACACCTGTC-----AGCTTCCTCATCTGCAGGCCTGGCTATCTTCCTTCACCTCCTACA-- s hg19.chr2 231111876 59 + 243199373 agatttatcttctaagttcattcatctgagtacctgaatacgttcatgaagatatctga-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493217 59 + 247518478 agatttatcttctaagttcattcatctgagtacctgaatacattcatgaagatatttga-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444900 59 + 131632457 agatttatcttctaagttcattcatctgagtacctgaatacgttcatgaagatatttga-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3641826 59 + 6458163 AGATTTATCTTCTAAGTTCATTCATCTGAGTACCTGAATACATTCATGAAGATATTTGA-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045069 59 + 106825570 AGATTTATCTTCTAAGTTCATTCATCTGAGTACCTGAATATGTTCACGAAGATATTTGA-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146719717 59 + 158406734 AGATTTATCTTCTAACTTCATTCATCTGAGTACCTGAACATGTTCATGAAGATATTTGA-- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28812260 47 - 32117204 AGACTCA---TCTAAGT---------TGAGTGCCTGAATATGTTCATGCAGCTATCAGA-- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42487539 61 + 51628933 ACGCTTGTCTTCTAACTTCATTCATCTGAGGGTCTGAATACATCCTCCCTCAACTCACATA i canFam3.chr25 I 4 I 5680 s ailMel1.GL192536.1 1044605 48 - 2169676 AGACTTGTCTTCTAACCTCATTCATCTGAGGGTCTGAATGCTGCTGTG------------- i ailMel1.GL192536.1 I 4 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17935919 70497 + 84719076 T e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=192354.000000 s mm10.chr1_GL456221_random 118944 94 + 206961 ------------CAGACTTCTCTATCTGGATGCTT--CAAAAACTTCATTATGAGGCGCTGGCACAA---TTCCATATTATATCTGAATTGACAGAGGACCTGCCTCCTCT s hg19.chr2 231111935 93 + 243199373 ------------aagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga---gtacataccatcttt--cctgaca-cagatctgactcctct i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493276 93 + 247518478 ------------aagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga---gtacataccatcttt--cctgaca-cagatctgactcctct i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119444959 93 + 131632457 ------------aagacctctccatttggatgtttttcaggaacctcaatacaagacacctccaaga---gtacataccatcttt--cctgaca-cagatctgactcctct i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3641885 92 + 6458163 ------------AAgacctctccatttggatgtttttcaggaacctcaatac-agacacctccaaga---gtacataccatcttt--cctgaca-cagatctgactccttt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045128 95 + 106825570 ------------AAgacctcttcatttggatgtttttcaagaacctcaatacaagacacctccaaga-ttgtacataccatcttt--cctgaca-cagatctaacttctct i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146719776 96 + 158406734 ------------AAgacctctccatttggatgtttttcaggaacctcaatacaagacaactccaaga-ctgcacataccatcttt--cctgacaccagatctgacccctct i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28812307 97 - 32117204 ------------AAGACATTGCCATTTCCATGTTTTCCAGGAGCCTCAAGGCAAGACCCTTCCAAAAATTATGCATACCATCTTT--CCTGTCACCAGCTCTGCCTTCTTT i otoGar3.GL873532 C 0 I 6687 s ailMel1.GL192536.1 1044653 104 - 2169676 CAGGGGACCTGAAGgacatct-catttagatgtttttcaggaacctcaatacaagatatccacaatt---gcacataccatgttt--cttgacaccagatctg-ctccttt i ailMel1.GL192536.1 C 0 C 0 e canFam3.chr25 42487600 5680 + 51628933 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17935919 70497 + 84719076 T e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=83514.000000 s mm10.chr1_GL456221_random 119038 40 + 206961 GCTG----TCTCTGTTTCAGCCCGGGACACTATTTCTCCATTCT s hg19.chr2 231112028 44 + 243199373 cccagtgttccctatctcaggatgaaacactattactccattct i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493369 44 + 247518478 cccagtgttccctatctcaggatgaaacactattactccattct i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119445052 44 + 131632457 cccagtgttccctatctcaggatgaaacactattactccattct i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3641977 44 + 6458163 cccagtgttccctatctcaggatgaaacactattactccattct i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045223 44 + 106825570 cccagtgttccctatctcaggatgaaacactattactcccttct i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146719872 44 + 158406734 ctcgctgttccctatctcaggatgaaacactgtgactccatttt i calJac3.chr6 C 0 C 0 s ailMel1.GL192536.1 1044757 44 - 2169676 cccggtgttccctatctcaggacagaacacaattgttccattcc i ailMel1.GL192536.1 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17935919 70497 + 84719076 T e felCat5.chrC1 212419253 1113 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=20257.000000 s mm10.chr1_GL456221_random 119078 8 + 206961 TGAAGCAG s hg19.chr2 231112072 8 + 243199373 tgaagcag i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493413 8 + 247518478 tgaagcag i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119445096 8 + 131632457 tgaagcag i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3642021 8 + 6458163 tcaagcag i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045267 8 + 106825570 tcaagcag i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146719916 8 + 158406734 tcaagcag i calJac3.chr6 C 0 C 0 s felCat5.chrC1 212420366 8 + 221441202 tcagacag i felCat5.chrC1 I 1113 I 1465 s ailMel1.GL192536.1 1044801 8 - 2169676 tcaggcag i ailMel1.GL192536.1 C 0 I 9 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17935919 70497 + 84719076 T e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=40247.000000 s mm10.chr1_GL456221_random 119086 22 + 206961 GG-------------TTGATACTGACTGCTCCTCC s hg19.chr2 231112080 35 + 243199373 aaacctaggagccactcatgactcaccccacctcc i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493421 35 + 247518478 aaacctaggagccactcatgactctccccacctcc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119445104 35 + 131632457 aaacctaggagccactcatgactctccccacctcc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3642029 35 + 6458163 aaacctaggagccactcatgactctccccacctcc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045275 35 + 106825570 aaacctagaagccactcatgactctccccacctcc i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146719924 35 + 158406734 aaaccaaggagccattaatgactctccccacctcc i calJac3.chr6 C 0 C 0 s ailMel1.GL192536.1 1044818 22 - 2169676 ---------ggtcatcagggactcctccccc---- i ailMel1.GL192536.1 I 9 I 5627 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17935919 70497 + 84719076 T e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=111788.000000 s mm10.chr1_GL456221_random 119108 56 + 206961 CT-AATGTAA----------AACCATC------------------TTCTACTTACTACATCTGTCCATTTTTTTCC----CAACAGAAA- s hg19.chr2 231112115 89 + 243199373 ctcaacttaaacaccccatcaaccatccagtagacttttagtgagttctacatatctcacctgtccatttccttccaccccaacacaaa- i hg19.chr2 C 0 I 10 s panTro4.chr2B 235493456 89 + 247518478 ctcaacttaaacaccccatcaaccatccagtagacttttagtgagttctacatatctcacctgtccatttccttccaccccaacacaac- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119445139 89 + 131632457 ctcaacttaaacaccccatcaaccatccagtagacttttagtgagttctacatatctcacctgcccatttccttccaccccaacacaaa- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3642064 89 + 6458163 ctcaacttaaacaccccatcaaccatccagtagacttttagtgagttctacatatctcacctgtccatttccttccaccccaacacaaa- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94045310 88 + 106825570 ctcaacttaagcaccccatcaa-catccagtagacttttagtgagttctacatacctcacctgtccatttccttccaccccaacacaaa- i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146719959 87 + 158406734 ctcaacttaaataccccattaaccacccagttgac--ttagtgagttc-acatatctcacctgtccatttccttccaccatgacacaaaa i calJac3.chr6 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17935919 70497 + 84719076 T e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=18328.000000 s mm10.chr1_GL456221_random 119164 19 + 206961 AGGCAAATCAGATCTCCCT s panTro4.chr2B 235493546 19 + 247518478 actctggtaagatctctct i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119445229 19 + 131632457 acgctggtaagatctttct i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3642154 19 + 6458163 actctggtaagatctctct i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94045399 19 + 106825570 actctggtaagatctctct i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146720046 19 + 158406734 actctggtcagatttctct i calJac3.chr6 C 0 I 3951 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17935919 70497 + 84719076 T e hg19.chr2 231112204 10 + 243199373 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456221_random 119183 231 + 206961 AATTCCAAtttattttattttatatatatgaccattttgcttgcaagtataaatatatacaccacatgcttgcctggcatccaaagaagtcccagtagggtgtcacagttttgggaacccaaactgcagagcattgtgagcttccacgtggtgctgggaattgactctggatcccctggaagagcaaaaagtgctcttaactgcggagccatcttttcagccccACAAATC e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045418 0 + 106825570 C e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642173 0 + 6458163 C e gorGor3.chr2B 119445248 0 + 131632457 C e panTro4.chr2B 235493565 0 + 247518478 C e hg19.chr2 231112204 10 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=601.000000 s mm10.chr1_GL456221_random 119414 10 + 206961 AGATCTCTTA s hg19.chr2 231112214 10 + 243199373 agatctctct i hg19.chr2 I 10 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045418 0 + 106825570 C e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642173 0 + 6458163 C e gorGor3.chr2B 119445248 0 + 131632457 C e panTro4.chr2B 235493565 0 + 247518478 C e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=-456.000000 s mm10.chr1_GL456221_random 119424 7 + 206961 TTTCATC s hg19.chr2 231112224 3 + 243199373 ctt---- i hg19.chr2 C 0 C 0 s gorGor3.chr2B 119445248 3 + 131632457 ctt---- i gorGor3.chr2B C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045418 0 + 106825570 C e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642173 0 + 6458163 C e panTro4.chr2B 235493565 0 + 247518478 C e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=152314.000000 s mm10.chr1_GL456221_random 119431 165 + 206961 TTAAGACTAAACAAACAGCCCTTGATCTCAAATGCCTTTTCTCATTTCATCTTTCCCCATCAAACGTACTCTCTAGAACTCAACCAGACACTCAGGGAAATGCAGTTGGCAAAGTTTCC-TCTCTCCATGGGTTCAGCAACTTTCTGGTGTCAGCAGCACTGGCTC s hg19.chr2 231112227 159 + 243199373 ---ggactggagcaacagcctctagactcacatctttcctctgatcttgtacctc----tcacatccattctttccaactcaaacaactctttcaaaaattgaagttggcttatcttacatttctactttaaatcAATAACTACTTGGGGTCATAAGGATTAAATC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235493565 162 + 247518478 cttggactggagcaacagcctctagactcacatctttcctctgatcttgtacctc----tcacatccattctttccaactcaaacaactctttcaaaaattgaagttggcttatcttacatttctactttaaatcAATAACTACTTGGGGTCATAAGGATTAAATC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119445251 159 + 131632457 ---ggactggagcaacagcctctagactcacatctttcctctgatcttgtacctg----tcacatccattctttccaactcaaacaagtctttcaaaaattgaagttggcttatcttacatttctactttaaatcAGTAACTACTTGGGGTCATAAGGATTAAATC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3642173 162 + 6458163 cttggactggagcaacagcctctagactcacctatttcctctggtcttgtacctc----tcacatccattctttccaactcaagcaactctttcaaaaatggaagttggcttatcttatgtttccactttaaatcAATAACTACTCGGGGTCATAAGGACTAAATC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94045418 162 + 106825570 cttggactggagcaacagcctctagactcacatctttcctctgatcttgtacttc----tcacatccattctttccaactcaaacaactctttcaaaaatggaagttggcttatcttacatttctactttaaatcAATAACTACTTGGGGCCATAAGGATTAAATC i rheMac3.chr12 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17935919 70497 + 84719076 T e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92366885 0 + 121549591 C a score=111893.000000 s mm10.chr1_GL456221_random 119596 99 + 206961 C-TTTCCTCCCTGAATACTGCAACTTCCTGTCTGCCTCTCTTG----TCCT---AGAGAACAGTGTATGAAACTTTCTTAGTTATTTTGGTTTCTTGGTTCTTCTTT s rn5.chr9 92366885 102 + 121549591 C-TTTCCTCCTTGAAGTTTCCAAATTCCTGTCTGTCTGTCTTG----TCCATCAAGAGAAGCGTGTGTGAAACTTTCTCATTTACTTCCATTACCTGGTATGTCTTT i rn5.chr9 C 0 C 0 s hg19.chr2 231112386 103 + 243199373 TATTTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTGCAATTACTTCAAG----GTTTATATACAAATTTTCTAGTCATTGTCATTTTCTGATGACTCTTT i hg19.chr2 C 0 I 3193 s panTro4.chr2B 235493727 103 + 247518478 TATTTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTGCAATTACTTCAAG----GTTTATATACAAATTTTCTAGTCATTGTCATTTTCTGATGACTCTTT i panTro4.chr2B C 0 I 3193 s gorGor3.chr2B 119445410 102 + 131632457 T-TTTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTGCAATTACTTCAAG----GTTTATATACAAATTTTCTAGTCATTGTCATTTTCTGATGACTCTTT i gorGor3.chr2B C 0 I 6366 s nomLeu2.GL397366 3642335 102 + 6458163 T-ATTTTTCCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTGCAATTGCTTCAAG----GTTTATATACAAATTTTCTAGTGATTGTCATTTTCTGATGACTCTTT i nomLeu2.GL397366 C 0 I 3170 s rheMac3.chr12 94045580 102 + 106825570 T-ATTTTTTCCCCAGGGCTCCAGCTTCATGTCTGCCTCTCCTGCAATTACTTCAAG----GTTTATATACAGATTTTCTAGTCACTGTCATTTTCTGATGACTTTTT i rheMac3.chr12 C 0 I 4897 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17935919 70497 + 84719076 T e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=901.000000 s mm10.chr1_GL456221_random 119695 13 + 206961 GATCTATTGCCTG s rn5.chr9 92366987 13 + 121549591 GATCCTTTGCCTG i rn5.chr9 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 6371126 0 + 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=13055.000000 s mm10.chr1_GL456221_random 119708 94 + 206961 TTGTGGGAA--ATAGGGAGAAATACTTGTGATTGTTGCT---TCGAACAACCTAATGCTTATGGGTAGAATATGTGGGTCCTTTATTCATGTCAAAGTA s rn5.chr9 92367000 97 + 121549591 TTGTGGGAA--ATAGGGAGAAATATTTGTGGCTGCTGCTGTTTGGAACAACCTGACTCTTATAGATAGAATATGTGGGTTCTTTATTCACGGTGAAGTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138049 96 - 10418462 TTTTGGGAATCACAAGGAGAAATTCTTGTGAATTCTGTT---TGGAACAATATGGCCTTCATTGTTTGAATATGTGTTTTTCCTGCTCAGGTTGAAGTA i speTri2.JH393335 T 5375 I 347 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=5398.000000 s mm10.chr1_GL456221_random 119802 90 + 206961 TTGGTTAATGGAGAAGTACTGTGTCTTGGTCTTCTGACTATTTGTGATACACAGTCAATGTTGTCATTTGGATTCCTTGTACTCCTGATt s rn5.chr9 92367097 89 + 121549591 GTAGTTACTGGGGAAAGACAATTTCTTGCTCT-CTGGCTATTTGTGTTACACAGTCAATGTTGTCACTTTGATTCCTTGTACTCCTGGTT i rn5.chr9 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 4138145 347 - 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=0.000000 s mm10.chr1_GL456221_random 119892 173 + 206961 ttctttatatgagtacactgtagctgtcttcagacacacaccagtagagtgtgcatcagatcccattacagatggttgtgatccaccatgtggttgctgggaattgaactcaggacctatgtgagagcagtcagtgctcttaacctctgagtcatctctccagccccCTGATT e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 4138145 347 - 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I e rn5.chr9 92367186 0 + 121549591 C a score=373.000000 s mm10.chr1_GL456221_random 120065 4 + 206961 TTCT s rn5.chr9 92367186 4 + 121549591 TTCT i rn5.chr9 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 4138145 347 - 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=7765.000000 s mm10.chr1_GL456221_random 120069 38 + 206961 TATATTCCCTGAACTTCCTGGTTCCACTTGAGCACACT s rn5.chr9 92367190 38 + 121549591 TATATTCCCTGAATGTCCTGGTTCCACTTGAGCACACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138492 38 - 10418462 TATTTTCTGTGAACTCTCTGGCTCCACCTGAGCATACT i speTri2.JH393335 I 347 I 15 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=-1175.000000 s mm10.chr1_GL456221_random 120107 57 + 206961 TTATCTGGTACCTCTGCATGGTTGATTGTCTGGTACCTCTGCCTGGTTGATTATCTG s rn5.chr9 92367228 13 + 121549591 -----------------------------GAGGTATTTCT---------------TG i rn5.chr9 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 4138530 15 - 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=745.000000 s mm10.chr1_GL456221_random 120164 4 + 206961 GTAC s rn5.chr9 92367241 4 + 121549591 GTCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138545 4 - 10418462 GTCC i speTri2.JH393335 I 15 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212420374 1465 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=5116.000000 s mm10.chr1_GL456221_random 120168 19 + 206961 CTCTGCATGGTTGATTGAC s rn5.chr9 92367245 19 + 121549591 CTCTGCATGGTTTATTGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138549 19 - 10418462 TTCTGCGTGGTCTATTGTG i speTri2.JH393335 C 0 C 0 s felCat5.chrC1 212421839 19 + 221441202 CCCTCCATGGTCCATCATG i felCat5.chrC1 I 1465 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e equCab2.chr6 17935919 70497 + 84719076 T e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=1386.000000 s mm10.chr1_GL456221_random 120187 2 + 206961 TT s rn5.chr9 92367264 2 + 121549591 TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138568 2 - 10418462 TC i speTri2.JH393335 C 0 C 0 s felCat5.chrC1 212421858 2 + 221441202 TC i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17865422 2 + 84719076 TC i equCab2.chr6 T 70497 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e ailMel1.GL192536.1 1044840 5627 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=14301.000000 s mm10.chr1_GL456221_random 120189 17 + 206961 CTTGTTTCTCTTCAGCA s rn5.chr9 92367266 17 + 121549591 TTTATTTCTCTTCAGCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138570 17 - 10418462 CTTGTATCTCTTCAGTG i speTri2.JH393335 C 0 C 0 s felCat5.chrC1 212421860 17 + 221441202 GCTGTTTCTCCACAGTG i felCat5.chrC1 C 0 I 19 s ailMel1.GL192536.1 1050467 17 - 2169676 CTTATTTCCCCTCAGGG i ailMel1.GL192536.1 I 5627 I 19 s equCab2.chr6 17865424 17 + 84719076 CTTGTTTCTCTTCAGTG i equCab2.chr6 C 0 I 19 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42487600 5680 + 51628933 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=3550.000000 s mm10.chr1_GL456221_random 120206 3 + 206961 TCC s rn5.chr9 92367283 3 + 121549591 TCC i rn5.chr9 C 0 I 18 s speTri2.JH393335 4138587 3 - 10418462 TCC i speTri2.JH393335 C 0 I 18 s felCat5.chrC1 212421896 3 + 221441202 TGC i felCat5.chrC1 I 19 C 0 s canFam3.chr25 42493280 3 + 51628933 TCC i canFam3.chr25 I 5680 C 0 s ailMel1.GL192536.1 1050503 3 - 2169676 CCC i ailMel1.GL192536.1 I 19 C 0 s equCab2.chr6 17865460 3 + 84719076 CCC i equCab2.chr6 I 19 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_153902 953 0 + 953 I a score=-5433.000000 s mm10.chr1_GL456221_random 120209 2 + 206961 AA- s rn5.chr9 92367304 2 + 121549591 CA- i rn5.chr9 I 18 C 0 s speTri2.JH393335 4138608 2 - 10418462 CA- i speTri2.JH393335 I 18 C 0 s micMur1.scaffold_3075 107348 2 + 176633 TG- i micMur1.scaffold_3075 T 557 I 49 s felCat5.chrC1 212421899 2 + 221441202 -AA i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42493283 2 + 51628933 -AA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050506 2 - 2169676 -AA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865463 2 + 84719076 -AA i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I a score=22073.000000 s mm10.chr1_GL456221_random 120211 28 + 206961 --AACGAATGA--TGAACAAGC-AGAGGAGATG s rn5.chr9 92367306 28 + 121549591 --GACGAATGC--TGAACAAGC-AGAGGAGGCG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138610 31 - 10418462 --GATGGCCCCCACAGACAATCTAGAGGAGGTG i speTri2.JH393335 C 0 C 0 s felCat5.chrC1 212421901 30 + 221441202 ATGACTAATGA--AAGAAAACC-AGAGGAGATG i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42493285 30 + 51628933 ATGATCAGTGA--AGAAGAACC-AGAGGAGATG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050508 30 - 2169676 ATGACGGGTGA--AGAAGAACC-AGAGGAAGTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865465 30 + 84719076 AGGACCAACGA--AGAAGAACC-AGAGGACGTG i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_3075 107350 49 + 176633 I a score=11040.000000 s mm10.chr1_GL456221_random 120239 12 + 206961 CTTAGCCTCCCA s rn5.chr9 92367334 12 + 121549591 CCCAGCCTTCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138641 12 - 10418462 GTCAGCCATTCA i speTri2.JH393335 C 0 C 0 s micMur1.scaffold_3075 107399 12 + 176633 CTCAGCCAGCTA i micMur1.scaffold_3075 I 49 I 123 s felCat5.chrC1 212421931 12 + 221441202 CCCAGCCTACCT i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42493315 12 + 51628933 CCCAGCCAAGTG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050538 12 - 2169676 CCCAGGCAACTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865495 12 + 84719076 CCCAGCCAGCAA i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I a score=16264.000000 s mm10.chr1_GL456221_random 120251 18 + 206961 CAATGCAATGGAGGAGGT s rn5.chr9 92367346 18 + 121549591 CAGTGCAATGGAAGAGGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138653 18 - 10418462 CTGTGGACTGGAGAAGGC i speTri2.JH393335 C 0 C 0 s felCat5.chrC1 212421943 18 + 221441202 GGAGAAGAGGGAGAAGGT i felCat5.chrC1 C 0 I 31 s canFam3.chr25 42493327 18 + 51628933 CTATCTGATGGAGAAGGT i canFam3.chr25 C 0 I 31 s ailMel1.GL192536.1 1050550 18 - 2169676 CTATGTGACGGGGAAGGT i ailMel1.GL192536.1 C 0 I 31 s equCab2.chr6 17865507 18 + 84719076 CTATGTGATGGAGAAGGT i equCab2.chr6 C 0 I 31 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_3075 107411 123 + 176633 I a score=6210.000000 s mm10.chr1_GL456221_random 120269 6 + 206961 GAGTCT s rn5.chr9 92367364 6 + 121549591 GAGTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138671 6 - 10418462 AATTGT i speTri2.JH393335 C 0 I 36 s felCat5.chrC1 212421992 6 + 221441202 AAATCT i felCat5.chrC1 I 31 C 0 s canFam3.chr25 42493376 6 + 51628933 GAATCT i canFam3.chr25 I 31 C 0 s ailMel1.GL192536.1 1050599 6 - 2169676 GGATCT i ailMel1.GL192536.1 I 31 C 0 s equCab2.chr6 17865556 6 + 84719076 GAATCT i equCab2.chr6 I 31 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_3075 107411 123 + 176633 I a score=9393.000000 s mm10.chr1_GL456221_random 120275 28 + 206961 TCATTTGTGAGTCTGCTAGAGAGAAAGA s rn5.chr9 92367370 13 + 121549591 --------------GTCAGAAAGAGA-A i rn5.chr9 C 0 C 0 s felCat5.chrC1 212421998 27 + 221441202 TTATTTTCTAATCAGCACAAAGAAAA-A i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42493382 27 + 51628933 TTGTTTTTCTGTCGACAAGGAGGAAA-A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050605 27 - 2169676 TTGTTTTCCTGTCTACAAGGAGGAAA-A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865562 27 + 84719076 TTGTTTTCCTGTCTATAGGGAGGAGA-A i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 4138677 36 - 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_3075 107411 123 + 176633 I a score=8327.000000 s mm10.chr1_GL456221_random 120303 40 + 206961 --CCCCAC-CCCTTTTCCCATCTGACCCTGTTC---TTTACA--TACT s rn5.chr9 92367383 40 + 121549591 --CCCCAC-CCCTTTCCCCATCTGACTCTGTTG---TTTACA--TACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138713 42 - 10418462 --CTCCCC-GTCTTCTCCCATTCCACCCTGCTG---CTTGCAGTTACC i speTri2.JH393335 I 36 C 0 s felCat5.chrC1 212422025 40 + 221441202 TCTTGCCT----TTCGCCCATCCTACCATTCTCTTCTTCATA--TT-- i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42493409 43 + 51628933 TCACCCCT-TTCTTCTCCTCTCCTCTGCCGCTCCCTTTCAGT--TA-- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050632 43 - 2169676 TTTCCCCT-CCCTTCTCCCCTCCTCCACTGCTCCCCTTCACT--TC-- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865589 44 + 84719076 TCTCCCCCTTTTTTCTCCCCTTGTCCCCTGCTCCCCTTCAAA--TA-- i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_3075 107411 123 + 176633 I a score=1302.000000 s mm10.chr1_GL456221_random 120343 1 + 206961 C s rn5.chr9 92367423 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138755 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s micMur1.scaffold_3075 107534 1 + 176633 C i micMur1.scaffold_3075 I 123 I 93 s felCat5.chrC1 212422065 1 + 221441202 C i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42493452 1 + 51628933 C i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050675 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865633 1 + 84719076 C i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I a score=-640.000000 s mm10.chr1_GL456221_random 120344 1 + 206961 A s rn5.chr9 92367424 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138756 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s felCat5.chrC1 212422066 1 + 221441202 A i felCat5.chrC1 C 0 I 1939 s canFam3.chr25 42493453 1 + 51628933 C i canFam3.chr25 C 0 I 15 s ailMel1.GL192536.1 1050676 1 - 2169676 A i ailMel1.GL192536.1 C 0 I 15 s equCab2.chr6 17865634 1 + 84719076 C i equCab2.chr6 C 0 I 15 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_3075 107535 93 + 176633 I a score=24513.000000 s mm10.chr1_GL456221_random 120345 80 + 206961 GGC--GAAGTCATAGAGGCAGAACCAAGGATCA-AAATA-ATGGGGAATGAGATGTGTAATGAAGGAAC-AGATGGGTGGTCAAT s rn5.chr9 92367425 82 + 121549591 GAGAAGAAATCATAGAGGCAGCACCAAAGGTCA-AACTA-ATGGGGAATGAGATGTGTAGGGAGGGAGC-AAATAGGTGGCCAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138757 76 - 10418462 GCAGAGGAGCCAAAGGA--------AGGGGTCAGAAATA-AGAGAGAATGTGCTGTTCAGGGAGGGAGCGAGGTGGGAAGACTGT i speTri2.JH393335 C 0 C 0 s canFam3.chr25 42493469 76 + 51628933 --TGAAAAGCCAAATGAA-------AACGATCAAAAATAGAGAGAGTATTAGATGTATAGAAAGGGTGAGAGATGGGTGGGCCAT i canFam3.chr25 I 15 I 6 s ailMel1.GL192536.1 1050692 72 - 2169676 --TGTAAAGCCAAGTGAA-------AAGGATCAAAAAGAAAGAGAGAATTAGGTGTATGGGAAGG----GAGGTAGGTGGACCGT i ailMel1.GL192536.1 I 15 I 6 s equCab2.chr6 17865650 76 + 84719076 --TGTAAAGCCAAGTGGA-------AAGGATCAAGAGTAGAGAGAGAATTAGGTGTACAGGAGGCAAGTGAGATGGGTCGTCTGT i equCab2.chr6 I 15 I 6 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212422067 1939 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_3075 107535 93 + 176633 I a score=1314.000000 s mm10.chr1_GL456221_random 120425 1 + 206961 C s rn5.chr9 92367507 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138833 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s micMur1.scaffold_3075 107628 1 + 176633 C i micMur1.scaffold_3075 I 93 I 40 s canFam3.chr25 42493551 1 + 51628933 C i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1050770 1 - 2169676 C i ailMel1.GL192536.1 I 6 C 0 s equCab2.chr6 17865732 1 + 84719076 T i equCab2.chr6 I 6 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212422067 1939 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I a score=21959.000000 s mm10.chr1_GL456221_random 120426 39 + 206961 C------TTTGGTGACAGAGA-AGAAGCCTTATCAGGCTCCTCTTC s rn5.chr9 92367508 42 + 121549591 C---ATCTCTGGTGACAGAGA-AGAAGCCATGTTAACCTCCACTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138834 46 - 10418462 CCCTGCCTCTGGAAAGAGTGACAGGAGCTGCCTTAGCCTCCACGTC i speTri2.JH393335 C 0 I 19 s canFam3.chr25 42493552 40 + 51628933 ------CTCTGATGATAGTGATACAAGCCATGCTAACTCCCAGGTC i canFam3.chr25 C 0 I 19 s ailMel1.GL192536.1 1050771 40 - 2169676 ------CTCTGGTGATAGTGACATGAGCCATATTAACTCCCAGGTC i ailMel1.GL192536.1 C 0 I 19 s equCab2.chr6 17865733 40 + 84719076 ------CTTTGGTGATAGTGACAGGAGCCATGTTAACCTCCAGGTC i equCab2.chr6 C 0 I 19 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212422067 1939 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_3075 107629 40 + 176633 I a score=1911.000000 s mm10.chr1_GL456221_random 120465 1 + 206961 A s rn5.chr9 92367550 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138899 1 - 10418462 A i speTri2.JH393335 I 19 C 0 s micMur1.scaffold_3075 107669 1 + 176633 A i micMur1.scaffold_3075 I 40 I 117 s canFam3.chr25 42493611 1 + 51628933 A i canFam3.chr25 I 19 C 0 s ailMel1.GL192536.1 1050830 1 - 2169676 A i ailMel1.GL192536.1 I 19 C 0 s equCab2.chr6 17865792 1 + 84719076 A i equCab2.chr6 I 19 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212422067 1939 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I a score=12664.000000 s mm10.chr1_GL456221_random 120466 83 + 206961 GAGTCTCAAAACATGGCCATTCAA-TGCAGGAGACACTAAGTCCCCTTATAACTTTCTGTTTGTCAG---AGG-------CCACTCTCCTGCGG s rn5.chr9 92367551 75 + 121549591 CAGTCCCCAAACATGGCCATTCCC-TGCAGGAGACACTAAG--CCCTTGTACTTTTCTGCTTTTCTC---AGG-------CACTTCTC------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138900 81 - 10418462 GGGTCTGAGGCCAGGAACGTCC-----CAGGAGCCACTTGAACTGCCTGGGCTTCCTGGCCTTCCCGTGTGGG-------CTCCTGTCATGGT- i speTri2.JH393335 C 0 C 0 s canFam3.chr25 42493612 87 + 51628933 GGGTCTGAGGGCAGGGACATTCCCACCTGGAAGATACTTGAGCCACCTTGGTTGTC-TGGTTTTCTT---AGGGTGAACTTTCCTGGTATG--- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050831 77 - 2169676 GGGTCTCAGGGCAGGGACAGTCCCACCTCGAAGATATTTGAGCCACCTTGGTCGTC--------------AGGGTGGGTTTTCCTGCTATG--- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865793 88 + 84719076 GGGTCTGAGGGCAGGGACATTCCCAACTAGGAGATACTTGAGCCACCTTGGTCTTCCTGGTTGTCTT---GAGGTGGGTTTTCCTACTATG--- i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212422067 1939 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e dasNov3.JH566347 1801727 1123 + 1805508 I e micMur1.scaffold_3075 107670 117 + 176633 I a score=200.000000 s mm10.chr1_GL456221_random 120549 2 + 206961 CC s dasNov3.JH566347 1802850 2 + 1805508 CC i dasNov3.JH566347 I 1123 C 0 e otoGar3.GL873532 28812404 6687 - 32117204 I e canFam3.chr25 42493699 0 + 51628933 C e ailMel1.GL192536.1 1050908 0 - 2169676 C e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 4138981 0 - 10418462 C e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e equCab2.chr6 17865881 0 + 84719076 C e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212422067 1939 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e micMur1.scaffold_3075 107670 117 + 176633 I e rn5.chr9 92367626 0 + 121549591 C a score=398.000000 s mm10.chr1_GL456221_random 120551 1 + 206961 A s otoGar3.GL873532 28819091 1 - 32117204 A i otoGar3.GL873532 I 6687 I 1 s canFam3.chr25 42493699 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050908 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865881 1 + 84719076 G i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1802852 1 + 1805508 A i dasNov3.JH566347 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 4138981 0 - 10418462 C e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e gorGor3.chr2B 119445512 6366 + 131632457 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212422067 1939 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e micMur1.scaffold_3075 107670 117 + 176633 I e rn5.chr9 92367626 0 + 121549591 C a score=1531.000000 s mm10.chr1_GL456221_random 120552 4 + 206961 -TTTT s gorGor3.chr2B 119451878 4 + 131632457 -TTTT i gorGor3.chr2B I 6366 C 0 s otoGar3.GL873532 28819093 4 - 32117204 -TTTC i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42493700 4 + 51628933 -TTTC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050909 4 - 2169676 -TCTC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865882 4 + 84719076 -TTTC i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1802853 4 + 1805508 GTAT- i dasNov3.JH566347 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e speTri2.JH393335 4138981 0 - 10418462 C e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212422067 1939 + 221441202 I e choHof1.scaffold_1541 11775 0 - 48313 I e micMur1.scaffold_3075 107670 117 + 176633 I e rn5.chr9 92367626 0 + 121549591 C a score=8823.000000 s mm10.chr1_GL456221_random 120556 10 + 206961 CCTTGGCCAT s rn5.chr9 92367626 2 + 121549591 --------AT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138981 2 - 10418462 --------AT i speTri2.JH393335 C 0 C 0 s gorGor3.chr2B 119451882 10 + 131632457 TGTTGGTTGT i gorGor3.chr2B C 0 I 2 s otoGar3.GL873532 28819097 10 - 32117204 CCTTGCTTGT i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42493704 10 + 51628933 CATTGGTCAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050913 10 - 2169676 CACTGGTCAC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865886 10 + 84719076 CATTGGTCAT i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1802857 10 + 1805508 ACTTGGTGGT i dasNov3.JH566347 C 0 C 0 s choHof1.scaffold_58312 5977 10 + 9524 CCCTGGCCAT i choHof1.scaffold_58312 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212422067 1939 + 221441202 I e micMur1.scaffold_3075 107670 117 + 176633 I a score=2026.000000 s mm10.chr1_GL456221_random 120566 2 + 206961 TC s rn5.chr9 92367628 2 + 121549591 TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138983 2 - 10418462 CC i speTri2.JH393335 C 0 C 0 s gorGor3.chr2B 119451894 2 + 131632457 AC i gorGor3.chr2B I 2 C 0 s micMur1.scaffold_3075 107787 2 + 176633 AC i micMur1.scaffold_3075 I 117 I 85 s otoGar3.GL873532 28819109 2 - 32117204 AC i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42493714 2 + 51628933 AT i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1050923 2 - 2169676 AC i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17865896 2 + 84719076 AC i equCab2.chr6 C 0 I 2 s dasNov3.JH566347 1802867 2 + 1805508 AT i dasNov3.JH566347 C 0 I 2 s choHof1.scaffold_58312 5987 2 + 9524 AT i choHof1.scaffold_58312 C 0 I 1 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212422067 1939 + 221441202 I a score=-1800.000000 s mm10.chr1_GL456221_random 120568 9 + 206961 TG-------------AGTCAAC s rn5.chr9 92367630 2 + 121549591 TA-------------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4138985 22 - 10418462 TGGGGTTGAACATGGAGTCCTC i speTri2.JH393335 C 0 C 0 s gorGor3.chr2B 119451896 9 + 131632457 -------------TGAGACCTC i gorGor3.chr2B C 0 C 0 s otoGar3.GL873532 28819111 9 - 32117204 -------------TGAGACCTC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42493718 9 + 51628933 -------------TGGATCCAC i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1050927 9 - 2169676 -------------TGGATCCAC i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17865900 9 + 84719076 -------------TGGATCCTC i equCab2.chr6 I 2 C 0 s dasNov3.JH566347 1802871 9 + 1805508 -------------TGAGATTTC i dasNov3.JH566347 I 2 C 0 s choHof1.scaffold_58312 5990 9 + 9524 -------------TGAGACCTC i choHof1.scaffold_58312 I 1 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e calJac3.chr6 146720065 3951 + 158406734 I e felCat5.chrC1 212422067 1939 + 221441202 I e micMur1.scaffold_3075 107789 85 + 176633 I a score=5021.000000 s mm10.chr1_GL456221_random 120577 6 + 206961 TGAG----TA s speTri2.JH393335 4139007 10 - 10418462 GAAGGGTTTC i speTri2.JH393335 C 0 C 0 s gorGor3.chr2B 119451905 6 + 131632457 TGAGGG---- i gorGor3.chr2B C 0 C 0 s calJac3.chr6 146724016 6 + 158406734 TGAGGG---- i calJac3.chr6 I 3951 C 0 s otoGar3.GL873532 28819120 6 - 32117204 TGAGGG---- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42493727 6 + 51628933 TAAGGG---- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050936 6 - 2169676 TAAGGG---- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865909 6 + 84719076 TAAGGG---- i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1802880 6 + 1805508 TAAGGG---- i dasNov3.JH566347 C 0 C 0 s choHof1.scaffold_58312 5999 6 + 9524 TGAGAA---- i choHof1.scaffold_58312 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e felCat5.chrC1 212422067 1939 + 221441202 I e micMur1.scaffold_3075 107789 85 + 176633 I e rn5.chr9 92367632 0 + 121549591 C a score=3785.000000 s mm10.chr1_GL456221_random 120583 1 + 206961 A s speTri2.JH393335 4139017 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s gorGor3.chr2B 119451911 1 + 131632457 A i gorGor3.chr2B C 0 I 5 s calJac3.chr6 146724022 1 + 158406734 G i calJac3.chr6 C 0 I 4 s otoGar3.GL873532 28819126 1 - 32117204 A i otoGar3.GL873532 C 0 I 5 s tupBel1.scaffold_131862.1-52911 46167 1 + 52911 A i tupBel1.scaffold_131862.1-52911 N 0 C 0 s canFam3.chr25 42493733 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050942 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865915 1 + 84719076 A i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1802886 1 + 1805508 A i dasNov3.JH566347 C 0 C 0 s choHof1.scaffold_58312 6005 1 + 9524 A i choHof1.scaffold_58312 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94045682 4897 + 106825570 I e nomLeu2.GL397366 3642437 3170 + 6458163 I e panTro4.chr2B 235493830 3193 + 247518478 I e hg19.chr2 231112489 3193 + 243199373 I e felCat5.chrC1 212422067 1939 + 221441202 I e micMur1.scaffold_3075 107789 85 + 176633 I e rn5.chr9 92367632 0 + 121549591 C a score=45915.000000 s mm10.chr1_GL456221_random 120584 10 + 206961 -----TTGTTTCC--TA s rn5.chr9 92367632 9 + 121549591 ------TGTTTTC--CA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139018 10 - 10418462 -----TTCTCTTC--TG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115682 10 + 243199373 -----TTTCTTTC--TG i hg19.chr2 I 3193 C 0 s panTro4.chr2B 235497023 10 + 247518478 -----TTTCTTTC--TG i panTro4.chr2B I 3193 C 0 s gorGor3.chr2B 119451917 10 + 131632457 -----TTCCTTTC--TG i gorGor3.chr2B I 5 C 0 s nomLeu2.GL397366 3645607 10 + 6458163 -----TTTCTTTC--TG i nomLeu2.GL397366 I 3170 C 0 s rheMac3.chr12 94050579 10 + 106825570 -----TTTCTTTC--TG i rheMac3.chr12 I 4897 C 0 s calJac3.chr6 146724027 12 + 158406734 -----TTTCTTTCTGTG i calJac3.chr6 I 4 C 0 s otoGar3.GL873532 28819132 10 - 32117204 -----TTTCTTTT--TA i otoGar3.GL873532 I 5 C 0 s tupBel1.scaffold_131862.1-52911 46168 10 + 52911 -----TTCCTTTC--TG i tupBel1.scaffold_131862.1-52911 C 0 C 0 s canFam3.chr25 42493734 10 + 51628933 -----TTTTATTC--TC i canFam3.chr25 C 0 I 5 s ailMel1.GL192536.1 1050943 10 - 2169676 -----TTTTGTTC--TG i ailMel1.GL192536.1 C 0 I 5 s equCab2.chr6 17865916 10 + 84719076 -----TTTCATTC--TA i equCab2.chr6 C 0 I 5 s dasNov3.JH566347 1802887 15 + 1805508 TTACACTCCTTTC--CA i dasNov3.JH566347 C 0 C 0 s choHof1.scaffold_58312 6006 15 + 9524 TTTCATTCCTTTC--CG i choHof1.scaffold_58312 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 18934667 52124 - 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e felCat5.chrC1 212422067 1939 + 221441202 I e micMur1.scaffold_3075 107789 85 + 176633 I a score=203443.000000 s mm10.chr1_GL456221_random 120594 30 + 206961 CAGAGGGAAGTAGTTCTTGTGAACAAACGT s rn5.chr9 92367641 30 + 121549591 CAGAGGGAAGTAGTTCTTGTGAACAAATGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139028 30 - 10418462 CAGAAAGCAACAGCTTCTGTTTACAAATGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115692 30 + 243199373 CAGAGGGCAGTGATGACTGTTCAGAAATGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235497033 30 + 247518478 CAGAGGGCAGTGATGACTGTTCAGAAATGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119451927 30 + 131632457 CAGAGGGCAGTGATGACTGTTCGGAAATGT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3645617 30 + 6458163 CAGAGGGCAGTGATGACTGTTCGGAAATGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050589 30 + 106825570 CAGAGGGCAGTGATGACTGTTCGCAAATGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146724039 30 + 158406734 CAGAGGGCAGTGATGACTGTTTGGAAATGC i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28819142 30 - 32117204 CAGAGGGAGGCAATACTTGTTTGGAAATGT i otoGar3.GL873532 C 0 C 0 s tupBel1.scaffold_131862.1-52911 46178 30 + 52911 CAGAGGACAGCAATGTCTGTCATGAAACGT i tupBel1.scaffold_131862.1-52911 C 0 C 0 s oviAri1.chr2 244338389 30 + 263237078 CAGAAGGCAGCGGCACCTGTTTCGAAATAT i oviAri1.chr2 I 50769 C 0 s canFam3.chr25 42493749 30 + 51628933 CAGAGAGTAGCAGTGCCTGTTTAGAAATGT i canFam3.chr25 I 5 C 0 s ailMel1.GL192536.1 1050958 27 - 2169676 AAG---GTAGCAGCGCCTGTTTAGAAATGT i ailMel1.GL192536.1 I 5 C 0 s equCab2.chr6 17865931 30 + 84719076 CAGAAGGCAACAGTGCCTGTTCAGAAATGT i equCab2.chr6 I 5 C 0 s dasNov3.JH566347 1802902 30 + 1805508 TAGAGGACAGTAATGTCTGTAAGGAAACGT i dasNov3.JH566347 C 0 C 0 s choHof1.scaffold_58312 6021 30 + 9524 CAGAGAGAAGCAATGAATGTTTGGAAGTGT i choHof1.scaffold_58312 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e turTru2.JH478086 129085 6546 - 138096 I e felCat5.chrC1 212422067 1939 + 221441202 I e micMur1.scaffold_3075 107789 85 + 176633 I a score=233095.000000 s mm10.chr1_GL456221_random 120624 22 + 206961 GTGATGAACAAGAGCCCCAGGA s rn5.chr9 92367671 22 + 121549591 GTGATGGACCAGATCCCCAGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139058 22 - 10418462 CTGATGAAGAAGAGGCCCAGGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115722 22 + 243199373 GTGATGGAGAAGAGCCCCAGGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235497063 22 + 247518478 GTGATGGAGAAGAGCCCCAGGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119451957 22 + 131632457 GTGATGGAGAAGAGCCCCAGGA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3645647 22 + 6458163 GTGATGGAGAAGAGCCCCAGGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050619 22 + 106825570 GTGATGGAGAAGAGCCCCAGGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146724069 22 + 158406734 GTGATGGAAAAGAGCCCCAGGA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28819172 22 - 32117204 GTGATGGAAAAGAGCCCCAGGA i otoGar3.GL873532 C 0 C 0 s tupBel1.scaffold_131862.1-52911 46208 22 + 52911 GTGATGTAGAAGTTCCTCAGGA i tupBel1.scaffold_131862.1-52911 C 0 C 0 s oviAri1.chr2 244338419 22 + 263237078 GTGATGAAGAAGAGACTCAGGA i oviAri1.chr2 C 0 C 0 s felCat5.chrC1 212424006 22 + 221441202 GTGATGAAGAAGAGCCTCAGGA i felCat5.chrC1 I 1939 C 0 s canFam3.chr25 42493779 22 + 51628933 GTGATCAAGAAGACCTCCAGGA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1050985 22 - 2169676 GTGATGAAGAAGAACGTCAGGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865961 22 + 84719076 GTGACGAAGAAGAGCTCCAGGA i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1802932 22 + 1805508 TTGAGGGAGAAGAACCCCAGGA i dasNov3.JH566347 C 0 C 0 s choHof1.scaffold_58312 6051 22 + 9524 GTGATGAAGAAGAAGCACAGGA i choHof1.scaffold_58312 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e turTru2.JH478086 129085 6546 - 138096 I e micMur1.scaffold_3075 107789 85 + 176633 I a score=34480.000000 s mm10.chr1_GL456221_random 120646 7 + 206961 TGCCCTG s rn5.chr9 92367693 7 + 121549591 TGAACTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139080 7 - 10418462 AGGCTTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115744 7 + 243199373 AGCCTCT i hg19.chr2 C 0 I 3 s panTro4.chr2B 235497085 7 + 247518478 AGCCTCT i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119451979 7 + 131632457 AGCCTCT i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 3645669 7 + 6458163 AGCCTCT i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94050641 7 + 106825570 AGCCTCC i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146724091 7 + 158406734 AGCCTCC i calJac3.chr6 C 0 I 3 s micMur1.scaffold_3075 107874 7 + 176633 AACCTTG i micMur1.scaffold_3075 I 85 I 1288 s otoGar3.GL873532 28819194 7 - 32117204 AGCCTCG i otoGar3.GL873532 C 0 I 3 s tupBel1.scaffold_131862.1-52911 46230 7 + 52911 AGCCTTG i tupBel1.scaffold_131862.1-52911 C 0 I 3 s oviAri1.chr2 244338441 7 + 263237078 ATTCTTG i oviAri1.chr2 C 0 C 0 s felCat5.chrC1 212424028 7 + 221441202 AGTCTTG i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42493801 7 + 51628933 AGACTTG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1051007 7 - 2169676 AGATTCG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17865983 7 + 84719076 AGCCTTG i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1802954 7 + 1805508 AGCCTCC i dasNov3.JH566347 C 0 C 0 s choHof1.scaffold_58312 6073 7 + 9524 AGTTGGG i choHof1.scaffold_58312 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e turTru2.JH478086 129085 6546 - 138096 I a score=242024.000000 s mm10.chr1_GL456221_random 120653 35 + 206961 CCCTCATCCCTGAGACAAGAAGCAGGTGAGTGAGG s rn5.chr9 92367700 35 + 121549591 TCCTCATCACTGAGACGTGACACAGGTGAGGGAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139087 35 - 10418462 GGCTCACCCCCCGCGGGTGAGCCAGGTAAGGCAGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115754 32 + 243199373 ---TCCCTAGCAAGATGTGGGTCAGGTAAAGAAGG i hg19.chr2 I 3 C 0 s panTro4.chr2B 235497095 32 + 247518478 ---TCCCTAGCAAGATGTGGGTCAGGTAAAGAAGG i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119451989 32 + 131632457 ---TCCCTAGCAAGACGTGGGTCAGGTAAGGAAGG i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3645679 32 + 6458163 ---TCCCTAGCGAGACGTGGGTCAGGTAAGGAAGG i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94050651 32 + 106825570 ---TCCCTAGCAAGATGTGGGTCAGGTAAGGAAGG i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146724101 32 + 158406734 ---TCCCTAGCAAGACATGGGTCAGGTAAGGAAGG i calJac3.chr6 I 3 C 0 s otoGar3.GL873532 28819204 32 - 32117204 ---CCCCCACCAACATGTGGGCCAGGTAAGGAAGG i otoGar3.GL873532 I 3 C 0 s tupBel1.scaffold_131862.1-52911 46240 32 + 52911 ---TCTCCACCAAGAAGTGGTTCAGGTAAGGAAGG i tupBel1.scaffold_131862.1-52911 I 3 C 0 s oviAri1.chr2 244338448 35 + 263237078 AGCCCACCACCAAAAAGTGGACCAGGTGAGGGAGA i oviAri1.chr2 C 0 C 0 s felCat5.chrC1 212424035 35 + 221441202 AGCTCCCCATCAACATGTGGGCCAGGTAAGAAAGG i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42493808 35 + 51628933 AGCTCACCACCAGAAAGTGGATCAGGTAAGGGAGG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1051014 35 - 2169676 AGCTCATCACCAGGAAGTGGATCAGGTAAGGGAGG i ailMel1.GL192536.1 C 0 I 1041 s equCab2.chr6 17865990 35 + 84719076 AGCCCACCACCAGAAAGTGGACCAGATAAGGGAGG i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1802961 35 + 1805508 AGCTTTCCATCAAGGAATGGATCAGGTAAGGAAGG i dasNov3.JH566347 C 0 C 0 s choHof1.scaffold_58312 6080 35 + 9524 CTCTCACCCCAAAGACCTCAAGCAAGTAAGGAAAG i choHof1.scaffold_58312 C 0 C 0 e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e turTru2.JH478086 129085 6546 - 138096 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=19148.000000 s mm10.chr1_GL456221_random 120688 3 + 206961 GGA s rn5.chr9 92367735 3 + 121549591 GGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139122 3 - 10418462 GAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115786 3 + 243199373 GGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235497127 3 + 247518478 GGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119452021 3 + 131632457 GGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3645711 3 + 6458163 GGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050683 3 + 106825570 GGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146724133 3 + 158406734 GGA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28819236 3 - 32117204 GGA i otoGar3.GL873532 C 0 C 0 s tupBel1.scaffold_131862.1-52911 46272 3 + 52911 AGA i tupBel1.scaffold_131862.1-52911 C 0 C 0 s oviAri1.chr2 244338483 3 + 263237078 TAA i oviAri1.chr2 C 0 C 0 s felCat5.chrC1 212424070 2 + 221441202 -GA i felCat5.chrC1 C 0 I 2 s canFam3.chr25 42493843 3 + 51628933 GGA i canFam3.chr25 C 0 I 728 s equCab2.chr6 17866025 3 + 84719076 TAA i equCab2.chr6 C 0 C 0 s dasNov3.JH566347 1802996 3 + 1805508 GGA i dasNov3.JH566347 C 0 C 0 s choHof1.scaffold_58312 6115 3 + 9524 GGA i choHof1.scaffold_58312 C 0 C 0 e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e turTru2.JH478086 129085 6546 - 138096 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=5232.000000 s mm10.chr1_GL456221_random 120691 1 + 206961 G s rn5.chr9 92367738 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139125 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115789 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235497130 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119452024 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3645714 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050686 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146724136 1 + 158406734 G i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28819239 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 s tupBel1.scaffold_131862.1-52911 46275 1 + 52911 G i tupBel1.scaffold_131862.1-52911 C 0 C 0 s dasNov3.JH566347 1802999 1 + 1805508 G i dasNov3.JH566347 C 0 n 0 s choHof1.scaffold_58312 6118 1 + 9524 G i choHof1.scaffold_58312 C 0 I 6 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338486 0 + 263237078 C e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866028 0 + 84719076 C e felCat5.chrC1 212424072 2 + 221441202 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=88231.000000 s mm10.chr1_GL456221_random 120692 45 + 206961 CAC-----GGTGTGGTCTGCA-GGGTTGTGGAGG-CTGAATTTTGAGCTGGG s rn5.chr9 92367739 45 + 121549591 CAC-----TGTGTGGTCTGTA-GGATTCCAAAGG-CTGAATTCTGAGCTGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139126 34 - 10418462 GGT-----GGCGACGGCTGCT-GGGTGTTGGGGG------------GCTAGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115790 51 + 243199373 GATTTCTGGCCCTGGGCTGCA-GAGTGTCAGGAGGTTGAATTTGGAGCTTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235497131 51 + 247518478 GATTTCTGGCCCTGGGCTGCA-GAGTGTCAGGAGGTTGAATTTGGAGCTTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119452025 51 + 131632457 GATTTCTGGCCCTGGGCTGCA-GAGCGTCAGGAGGTTGAATTTGGAGCTCGT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3645715 51 + 6458163 CATTTCTGGCCCTGGGCTGCA-GAGTGTCAGGAGATTGAATTTGGAGCTCGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050687 51 + 106825570 GATTTCTGGCCCTGGGCTGCA-GAGTGTCAGGAGGTTGAATTTGGAGCTTGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146724137 51 + 158406734 AATTTCTGGCTCTGGGCTGCA-GAGTGTCAGGAGGTTGAATTCAGAGCTGGT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28819240 41 - 32117204 GATTTCTG----------CCA-GGGTGTCAGAAGTTTGAATGCTCAGCCAGT i otoGar3.GL873532 C 0 C 0 s tupBel1.scaffold_131862.1-52911 46276 51 + 52911 GATTTCTCTTCCTGGCCTGCA-GGATATCAAAAGTTCAAATTCAGATCTGGT i tupBel1.scaffold_131862.1-52911 C 0 C 0 s oviAri1.chr2 244338486 35 + 263237078 ----GGATAGTCTGGGCTGCA-AGGCCTCAGGAGGATGGG------------ i oviAri1.chr2 C 0 C 0 s felCat5.chrC1 212424074 47 + 221441202 ----GCCAGCTCTGGGCTGTA-GGGTATCAGGTGGCTGCATTCAGAGCTGAG i felCat5.chrC1 I 2 I 619 s equCab2.chr6 17866028 21 + 84719076 -------------GGATTGTC----------TTGGCTGCA-----GGCT--- i equCab2.chr6 C 0 C 0 s choHof1.scaffold_58312 6125 47 + 9524 -----CCAGCCATGGGCTGCAAGAGTACCATGAGGTTGAATCCAGAGCTGGG i choHof1.scaffold_58312 I 6 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e turTru2.JH478086 129085 6546 - 138096 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=86771.000000 s mm10.chr1_GL456221_random 120737 30 + 206961 -GTTTCCTG-CTGTGTTTGCTCT-GTATGCACA s rn5.chr9 92367784 27 + 121549591 -TTTCT-----TGTGTTTGCTCTTGTGTGCACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139160 30 - 10418462 -GTTTCCTG-GTGGGTTTACTCT-GAATGTGCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115841 31 + 243199373 -GTTTCCTGATTGTCTTTCCTCC-AAGTATACT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235497182 31 + 247518478 -GTTTCCTGATTGTCTTTCCTCC-AAGTATACT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119452076 31 + 131632457 -GTTTCCTGATTGACTTTCCTCT-GCATATACC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3645766 31 + 6458163 -GTTTCCTGATTGACTTTCCTCT-GTGTATAGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050738 30 + 106825570 -GTTTCCTG-TTGACTTTCCTCT-GCGTATACC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146724188 31 + 158406734 -GTTTCCTGATTGATTTTCCGCT-GAGTATATT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28819281 31 - 32117204 -ATTTCCTGACTGAGTTTTCTCT-ATACTTACT i otoGar3.GL873532 C 0 C 0 s tupBel1.scaffold_131862.1-52911 46327 31 + 52911 -ATTTCCTAATGTCTTTTACTCT-GAGTGTAAC i tupBel1.scaffold_131862.1-52911 C 0 C 0 s oviAri1.chr2 244338521 31 + 263237078 -GTTTCCTAATGGATGCTACTCT-GGGAATACC i oviAri1.chr2 C 0 C 0 s equCab2.chr6 17866049 31 + 84719076 -GTTTCTTGATGGATTTTACTCT-GAGCATATT i equCab2.chr6 C 0 C 0 s choHof1.scaffold_58312 6172 30 + 9524 TTTTTCCTCATGGATTTTTCTCT-GAGCATA-- i choHof1.scaffold_58312 C 0 N 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e turTru2.JH478086 129085 6546 - 138096 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=35909.000000 s mm10.chr1_GL456221_random 120767 10 + 206961 TCACCATGAA s rn5.chr9 92367811 10 + 121549591 TCAACACAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139190 7 - 10418462 T---CATGAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115872 10 + 243199373 TCACAGTGAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235497213 10 + 247518478 TCACAGTGAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119452107 10 + 131632457 TCACAGTGAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3645797 10 + 6458163 TCACAGTGAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050768 10 + 106825570 TCACAGTGAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146724219 10 + 158406734 TCACAGTGAA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28819312 10 - 32117204 TCACAGTGAA i otoGar3.GL873532 C 0 C 0 s tupBel1.scaffold_131862.1-52911 46358 10 + 52911 CCACAGTCAA i tupBel1.scaffold_131862.1-52911 C 0 C 0 s oviAri1.chr2 244338552 10 + 263237078 CCACAATGGA i oviAri1.chr2 C 0 n 0 s equCab2.chr6 17866080 10 + 84719076 CTACAATGAA i equCab2.chr6 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e turTru2.JH478086 129085 6546 - 138096 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=4081.000000 s mm10.chr1_GL456221_random 120777 2 + 206961 GA s rn5.chr9 92367821 2 + 121549591 GA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139197 2 - 10418462 GA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115882 2 + 243199373 AG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235497223 2 + 247518478 AG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119452117 2 + 131632457 AG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3645807 2 + 6458163 AG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94050778 2 + 106825570 AG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146724229 2 + 158406734 GA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28819322 2 - 32117204 AG i otoGar3.GL873532 C 0 C 0 s tupBel1.scaffold_131862.1-52911 46368 2 + 52911 AA i tupBel1.scaffold_131862.1-52911 C 0 N 0 s equCab2.chr6 17866090 2 + 84719076 AG i equCab2.chr6 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=-1667.000000 s mm10.chr1_GL456221_random 120779 2 + 206961 GA- s rn5.chr9 92367823 2 + 121549591 GA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139199 2 - 10418462 AA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115884 2 + 243199373 AA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235497225 2 + 247518478 AA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119452119 2 + 131632457 GA- i gorGor3.chr2B C 0 I 2174 s nomLeu2.GL397366 3645809 2 + 6458163 GA- i nomLeu2.GL397366 C 0 I 1042 s rheMac3.chr12 94050780 2 + 106825570 GA- i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146724231 2 + 158406734 AT- i calJac3.chr6 C 0 I 1 s otoGar3.GL873532 28819324 2 - 32117204 AA- i otoGar3.GL873532 C 0 I 2 s equCab2.chr6 17866092 3 + 84719076 GTC i equCab2.chr6 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=767.000000 s mm10.chr1_GL456221_random 120781 2 + 206961 CG s rn5.chr9 92367825 2 + 121549591 GG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139201 2 - 10418462 TG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231115886 2 + 243199373 TG i hg19.chr2 C 0 I 310 s panTro4.chr2B 235497227 2 + 247518478 TG i panTro4.chr2B C 0 I 3096 s rheMac3.chr12 94050784 2 + 106825570 CA i rheMac3.chr12 I 2 I 5 s calJac3.chr6 146724234 2 + 158406734 CA i calJac3.chr6 I 1 I 4 s otoGar3.GL873532 28819328 2 - 32117204 CA i otoGar3.GL873532 I 2 I 4 s equCab2.chr6 17866095 2 + 84719076 CA i equCab2.chr6 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e nomLeu2.GL397366 3645811 1042 + 6458163 I e gorGor3.chr2B 119452121 2174 + 131632457 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=17747.000000 s mm10.chr1_GL456221_random 120783 54 + 206961 ----GTCATGCACTGGCT---GTTCTTT-TATTTGCC---TATGGCATTCTGGGTAATTTCAGGG s rn5.chr9 92367827 57 + 121549591 ----GTCGTGTGCTGGCTAATGTTCTTT-TATTTGCC---TATGGCATTGTGGGTAATTTTCAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139203 49 - 10418462 ----ATCCTGT------T---ACTCTTCACATTTCCC---CTTGGCCTTTTGGGGAAATTCAGGG i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 94050791 52 + 106825570 ----ATCCTGA------G---ATTTTTCACATTTTCTGTACATGGATCTTTTGGGAAATCCAGGG i rheMac3.chr12 I 5 C 0 s calJac3.chr6 146724240 52 + 158406734 ----AGTCTCA------G---ATTGTTCACATTTTCTATACACAGATTCTTTGGGAAATGCAGGG i calJac3.chr6 I 4 C 0 s otoGar3.GL873532 28819334 52 - 32117204 ----ATCACGA------G---GTTTTTCACACTTTCTACACATGGACCTTTTGGGAAATGCAAGG i otoGar3.GL873532 I 4 C 0 s equCab2.chr6 17866097 57 + 84719076 GTTAATTCTCA-CATATA---ATTTTTCACATTTAT----CTTGGCCCTTTGGGGAAATTCAGGG i equCab2.chr6 C 0 I 220 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e nomLeu2.GL397366 3645811 1042 + 6458163 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e hg19.chr2 231115888 310 + 243199373 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=-17177.000000 s mm10.chr1_GL456221_random 120837 57 + 206961 TGGTAAAAAGT-CTTG-A---GAACATCATGA----AAGAA-------TATATTTTATTAGGTGCTCACAG----------------------------------------------------------------------------------------------GT s rn5.chr9 92367884 152 + 121549591 TGGTAAAATGT-CTTGGA---AAACATCATGA----AAGAA-------TGTCATTTATTAGGTGCTCACAggtcactttcttttttcttttttttctttttcttttttttttggggggggggaggtggggaccgaacccagggccttgcgcttgctaggcCACAGGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139252 67 - 10418462 AGACAAGAAAT-CTCGAG---AAACTCTGTGATT--AAGGAGTCTTTTTGTTTGTTATTAGGTATTGGCAG----------------------------------------------------------------------------------------------AT i speTri2.JH393335 C 0 I 1 s rheMac3.chr12 94050843 60 + 106825570 AGG-----AAT-CTTTACACGAAAGTCCATGTTTAACAGAA-------TGGGATTTATTGTTTGAACATAT----------------------------------------------------------------------------------------------GT i rheMac3.chr12 C 0 I 113 s calJac3.chr6 146724292 61 + 158406734 AGG-----AATCCTTTATACAAGAGTCCGTGTTTAATGGAA-------TGGGTTTTATTGTTTGAAAACAT----------------------------------------------------------------------------------------------GT i calJac3.chr6 C 0 I 112 s otoGar3.GL873532 28819386 47 - 32117204 AGG-----AAT-CTCTAT---AAAGTAAACATTCAATAGAA-------TAGGTTTTATTGTTT-------------------------------------------------------------------------------------------------------- i otoGar3.GL873532 C 0 I 5048 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3645811 1042 + 6458163 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e hg19.chr2 231115888 310 + 243199373 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=2723.000000 s mm10.chr1_GL456221_random 120894 5 + 206961 CACTT s rn5.chr9 92368036 5 + 121549591 CACTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139320 5 - 10418462 CACTT i speTri2.JH393335 I 1 I 3 s rheMac3.chr12 94051016 5 + 106825570 ctcct i rheMac3.chr12 I 113 I 50 s calJac3.chr6 146724465 5 + 158406734 ctcct i calJac3.chr6 I 112 I 4469 e otoGar3.GL873532 28819433 5048 - 32117204 I e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3645811 1042 + 6458163 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e hg19.chr2 231115888 310 + 243199373 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=726.000000 s mm10.chr1_GL456221_random 120899 2 + 206961 TT s rn5.chr9 92368041 2 + 121549591 TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139328 2 - 10418462 TT i speTri2.JH393335 I 3 C 0 s rheMac3.chr12 94051071 2 + 106825570 tt i rheMac3.chr12 I 50 I 21 e otoGar3.GL873532 28819433 5048 - 32117204 I e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3645811 1042 + 6458163 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e hg19.chr2 231115888 310 + 243199373 I e calJac3.chr6 146724470 4469 + 158406734 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=-303.000000 s mm10.chr1_GL456221_random 120901 1 + 206961 T s rn5.chr9 92368043 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139330 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 94051094 1 + 106825570 t i rheMac3.chr12 I 21 C 0 s calJac3.chr6 146728939 1 + 158406734 T i calJac3.chr6 I 4469 C 0 e otoGar3.GL873532 28819433 5048 - 32117204 I e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3645811 1042 + 6458163 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e hg19.chr2 231115888 310 + 243199373 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=960.000000 s mm10.chr1_GL456221_random 120902 2 + 206961 TA s rn5.chr9 92368044 2 + 121549591 TA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139331 2 - 10418462 GA i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 94051095 2 + 106825570 ca i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146728940 2 + 158406734 CA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28824481 2 - 32117204 TA i otoGar3.GL873532 I 5048 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3645811 1042 + 6458163 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e hg19.chr2 231115888 310 + 243199373 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=28008.000000 s mm10.chr1_GL456221_random 120904 90 + 206961 GGAATCTGCT-GGGTGGGAGAACACT-CGTTGCTTTTGTCTTTTCACAGTCACTAAGGTCGTAATATATTGAAACTATAGGACAATTT---------GTTG s rn5.chr9 92368046 90 + 121549591 GGAATCTGAT-GGGTGGGAGAACACT-CTTGCCTTTGACTTTTCCACAGTCACTAAGGCCGATATATATTGAAACTCTAGGACAATTT---------CTTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139333 87 - 10418462 AAAATACTA--GGATAAGAGAATGCTGTTTTGCCTTCATCTTTTCACCACTATTAGTATTATTAT---TTGAATTCAGATAACAATTT---------ATGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116198 81 + 243199373 agaATATGCTAGGAGGAAAAAATGCT-CTTTGCCTTTA-TTTTTCTTCACTATCAATAGTATTAC---TTGAATT----TAA-AATTCTAT---------- i hg19.chr2 I 310 I 3 s rheMac3.chr12 94051097 83 + 106825570 gaaaTACAGTAGGAAGAAGCAATGCTATTTTGTCTTTA-TTTTTCATAGCTATCAATACTATTAT---TTGAATTCATATAA-AATTT------------- i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146728942 87 + 158406734 GAAATTTGCTCGGAGGAAGCAATGCTCTTTTGCCTTTATTTTTTTATAGCTATCAATACTAATAT---TTGAATTCGTATAA-AATTT---CGA------- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28824483 84 - 32117204 AAAACATGCTAGGATGAGACAATGCTCTTTTGCTTTCA-TTTTTCACATGTGTTAATAC---TAT---TTGGATTTATACAACAATTT------ATA---- i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3645811 1042 + 6458163 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=5472.000000 s mm10.chr1_GL456221_random 120994 7 + 206961 TCCTAAT s rn5.chr9 92368136 7 + 121549591 CTCTAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139420 7 - 10418462 TCCCATT i speTri2.JH393335 C 0 I 3 s hg19.chr2 231116282 7 + 243199373 CACTCAc i hg19.chr2 I 3 C 0 s nomLeu2.GL397366 3646853 7 + 6458163 TTCTCGC i nomLeu2.GL397366 I 1042 C 0 s rheMac3.chr12 94051183 7 + 106825570 TTCTCAC i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146729029 7 + 158406734 TTCTTAC i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28824567 7 - 32117204 TTCTAAC i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=2300.000000 s mm10.chr1_GL456221_random 121001 1 + 206961 T s rn5.chr9 92368143 1 + 121549591 T i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_48264 3307 1 + 7780 C i dipOrd1.scaffold_48264 N 0 N 0 s speTri2.JH393335 4139430 1 - 10418462 T i speTri2.JH393335 I 3 C 0 s hg19.chr2 231116289 1 + 243199373 t i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3646860 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94051190 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146729036 1 + 158406734 T i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28824574 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=403550.000000 s mm10.chr1_GL456221_random 121002 445 + 206961 TCTTGA-----TCTCCATGGAAACCAAGTAA----CGT-------------TGATTAATCATTTTTTTCCTTATC----TTTTTTCCAAGAACCTGTCAAAATT--CTT--AAAGGGAACTATTGTTTCATTTGTCTGATACAATTCA------------ATAAAACCCAAAACTATTT--GACACATATACTTCAT-GTTAT-CTGGACCATATACTTT-CTATGCATTCT--TTGATACATATGTCATCCC-TTCATTCCTAAAGCTCTTAAGACTTAGTCAGGG--GAAATTGTTAC---AAACTTAAGGCTCTAGGTACATA-GAAGTGAATAAGATGCTGGCATGTTTCAGAA--CTTGAAAAGGACAAGGAGATCAGAGATCAAGTTTCCAGATGATTCAACATGGGCTCCACGTTCTCTGAGACAGAT--------GGTT-AGGTTCTTGTGGTCTGAACCCAACATGGACGTTCAA-GGGTCTTCTGACACTTAAGGGAGCCTGC s rn5.chr9 92368144 432 + 121549591 TCTGGA-----TCTCCATGGAAACCAAGTAA----TGTAGTATTCCTATACTGACTAATCATTTTTCT-----TA----TTTTTGCCACAAACCTGCCAAAAAT--GTTTAAAGAGGAACTACTGTATCATTCGTTTGATGCAATTCA------------TTAAAACCTAAAGTTATTT--GAC-------------------------CCACATATTTT-CCATGCATCCT--TTGATACATATGTTATCCC-TTCATTCCTAAAACTCTTAAGACTCTGTCAGGG--GAAATTGTTAC---AAGTTTAAGGCTCTAGGTACATAAGAAATGAATAAGATTCTGGCATGTTTCAGAA--TCTTAAAATGATAAGGAGAACAGAGGTCAAGCTTCCAGATGGTTGGACATGGGCTCTAGGATCTCTGAAGCTGGT--------AGTT-AGGTTCTTGTGGTCTGAACCCAA-ATGAAAGTTCAA-AGGTCTTTTAATACTCAAGGGAGCTTGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139431 458 - 10418462 CCTTAT-----CTTCTATGGAAATTAAAAAAAAAGCTTAGCATTTCTCTGCTGGTTGATAATTTTTTT----ACA----GTTTTGTCACAAACTTGACAAAG-C--CTTCAAAGAAACACTAATGTAGTATCTAATTGATAGAATTTAGATGAGCTATTTATAAAAACAGATTCTGTTTTGGACCAGTGTTCTTCCT-GTGCCATTGGATTACACACTGT-TTTTTCAGTGTGCTTCAAAATTACGTTCTTCT-TCCATCCTCAAAAACTTTAAGACACAGGCAGGG-AGATGTTGCTAC---TGTTTTGAGGAACTAG--AAATAAGATGTATATAAGATGCAAGGAAAG---AGAAGTCCCACGAAAGAAAAGCAGAGTGGAGA-----------------TGCACATGGGCTTCAGGTTCTGAGAAGCTGGCATG----AGGTT-GGG---CCATGTTCAATGTCCAAAGCAGAAGTCCAAGGGGCCTTTGGGTACCCA--GAAATCCAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116290 478 + 243199373 -----t-----tttctatgggaatgaaaaag----cttatcatccctctgctggtagatactttttat------c----attttattacaaacttgacaaag-c--cttcaaagaaatggtatcctaccctctaattgacagaattcagatgatctctttatgagactaaatgctatttttgaccaatactcttcattatgttattggatcatGCAGTAT-GTTTTTAGAGGA-CTCTGATAAGTGTTACATT-TTTACCCTCAGAAACCTCAAGATTTAGGCAGGGAAAGTGCTGTTATTGTTGTTTTGAGGAGCCAGAAACACA-GACGTACATGTGACACCGGTGTTTGTTAAGA--CCCAAGAAGGA-GGGAAATGCGGAGACCAGTGTCCTGGATGACTCCTTACAGGCTTTCAGTTCTGTGAGGCGGGCATGGGTTAGGGT-GGGGTCCCATAGACTGAGTCCAATGTGGATGCCCAAAGGGTTTTTAGGAATCTGAGAGACTCTAC i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3646861 478 + 6458163 -----C-----CCTCTATGGAAATAAAAAAG----AGTATCATTCCTCTGCTGGTAGATATTTTTTAT------G----ATTTTTTCACAAACTTGACAAAG-C--CTTCAGTGTAACGGTATTCTACCATCTAATTGGCAGAACTTAGGTCAACTATTTATGAGACTAAATGGTATTTTTGACCAGTACTCTCCATTATGTCGTTGGATCATGCAGTGT-TTTTTCAGAGTA-CTCTGAGAAGTGTTATAAT-TTTACCCACAAAAACCTCAAGACTTAGATAGGGAAGGTGCTGTTATTGCTGTTTTAAGGAGCCAGAAACATA-GACGTGCATGTGACACGGGTGTTTGATAAGA--CCAAAGAAAAA-AGAAAGAGCAGAGACCAGTGTCCTGGGTGACTCCTTACAGGCTTTCAGTTCTGTGAGGTGGGCATGGGTTGGGGT-GGGGTCCCATAGTCTGAGTCCAGTGTGGATGCCCAAAGGGTTTTTAGGAATCCAAGAGACTCTAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94051191 477 + 106825570 -----C-----CCTCTATGGAAATAAAAAAG----AGTGTCATTCCTCTGCTGGTAGATACTGTTAAT------C----ACTTTTTCACAAACTTGACAAAG-C--CTTCAGTGTAATGGTATTCTACCATCTAACTGGCAGAATTTAGATCAACTATTTATGAGACTAAATGCTGTTTTTGACCAGTACTCCCCATTTTGTCATTGGATCATGCAGTGT-TTTTTCAGAGTA-CTCTGATAAGTGTTATAAT-TTTACCCACAAAATCCTCAAGACTTAGATAGGGAAGGTGCTGTTATTGCTGTGTTGAGGAGCCAGAAACACA-GAAGTGCATGTGACACGGGTGTTTGATGAGA--CTCAAGAAAAA-AGAAAGAGCAGAGACCAGTGTCCTGGATGACTCCTTACAGGCTTTCAGTTCTATGA-GTGGGCATGGGTTGGGGT-GGGGTCCCATAGTCTGAGTCCAGTGTGGATGCCCAAAGGGTTTTTAGGAATCCAAGAGACTCTCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146729037 484 + 158406734 -----C-----CTTCTATGGAAATGAAAAAG----GATATCTTTCCTCTGCTGCTAGATACTCTTTAT------CTTtttttttttcacaaacttgacaaaa-cctcttcagagaaatggtattctaccatccaattggcagaattcagatcagctatttatggaactaaatgctatttttgaccagtactatccattatgtcattggatcatGCAGTGT-ATTTTCAGAGTA-CTCTGATAAGTTTTATACT-TTTACTCACAAAAACCTCAAAACTTAGATAGGGAAGAGGCTGTTATTG-TGTTTTGAGGAGCCAGAAACACA-GACATGCCTGTGACATGCGTGTTTGATAAGA--CCCAAGAAAAA-AACAAGAGCAGAGACCGGTGTTCTGGATGACTCCTTCTGGGCTTCCAGTTCTGTGAGGCTGGCATGGGTTGGGGTGGGGGTCCTACAGCCTGGGTCCAGTGTAAAAGCCCAAAGGGATTTTAGGAATCCAGTAGACTCTAC i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28824575 472 - 32117204 -----CTTTTTCTTCTTTGGAAATTGAAAAG----CTTAGCATTCCTTTGCTGGTTGATAATTTTTAT------T----ATTTTGTTAGAATCTTGACAAAG-C--CTTTGCAGAAGTAGTATCCTGCCATCTAATTGACAGAGTTCAGATCAAC-------GAAACCAAATGCTATGTTTGATCATTTCTCTTCATCATGTCATGGGATAACACAGTGTGTTTTTCAGAGCA-TTTAGATAAGTATGTTATTCTTTACCCTCCAAAACCTTAAGACTTAGACAGAGAAATTGTTGTTAT---TGTTTTGAGGAACCTAAAACACT-GAAGTGTATATGATATAGAT-TTTTTTAAGA--CCCAAAAAAGA-A--AAGAACAGAGACCAGTGTTCTGGAAGACTCCTTATAGGCTTTCCATTTTGTGAGTCTGGCATGGGTTGAGTC-TGAGTCCCATGGGCTGAGTCCAAAGTGGAAACCCAAAGGGGCTTTTGATAGCCAGGGGAGTCTAC i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e felCat5.chrC1 212424121 619 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=-209.000000 s mm10.chr1_GL456221_random 121447 1 + 206961 C s rn5.chr9 92368576 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139889 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116768 1 + 243199373 C i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3647339 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94051668 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146729521 1 + 158406734 C i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28825047 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212424740 1 + 221441202 C i felCat5.chrC1 I 619 I 48 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=52871.000000 s mm10.chr1_GL456221_random 121448 42 + 206961 AGGGCCCATTGTAAAGAGGTT-TTACTTACCAAAT-AGGAATGC s rn5.chr9 92368577 42 + 121549591 AGGGCCCAGTGGAAAGAGGTT-TTATTTACCAAAT-AGGAATGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139890 42 - 10418462 AGGATTCCATGGACAGAGATT-TTATTTAGCAAAT-AAGAATGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116769 43 + 243199373 TGGGTTTAATGGAAAGAGACTTTTA-TTAACAAGTAAAGCAAGC i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3647340 44 + 6458163 AGGGCGCAATGGAAAGATACTTTTATTTAACAAATAAAGAAAGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94051669 44 + 106825570 AGGGTTCAATGGAAAGATACTCTTATTTAACAAATAAAGAAAGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146729522 43 + 158406734 AGGGTTCGATGGAAAGATACT-TTATTTAACAAATAAAGAAAGA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28825048 44 - 32117204 AGGGTTCAGTGGAAATAGGCTTTTGCTTAACAAATAAGGAATTC i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e felCat5.chrC1 212424741 48 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=4444.000000 s mm10.chr1_GL456221_random 121490 3 + 206961 TTA- s rn5.chr9 92368619 3 + 121549591 TTA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139932 3 - 10418462 TTA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116812 3 + 243199373 TTA- i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3647384 3 + 6458163 TTA- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94051713 3 + 106825570 TTA- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146729565 3 + 158406734 TTA- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28825092 3 - 32117204 TTA- i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212424789 3 + 221441202 -CAC i felCat5.chrC1 I 48 I 16 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=16719.000000 s mm10.chr1_GL456221_random 121493 16 + 206961 GGAAGAGAAGAAGAAG s rn5.chr9 92368622 15 + 121549591 GGGCGAGAAGATGAA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139935 15 - 10418462 GGGAGAGAAGAGGGG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116815 15 + 243199373 AGGAGAGGAGTGGAA- i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3647387 15 + 6458163 GGGAGAGATAAGGAA- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94051716 15 + 106825570 GGGAGAGATGAGGAA- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146729568 10 + 158406734 GGGAGA-----GGAA- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28825095 15 - 32117204 GGGAGAGAAAAGGGA- i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e felCat5.chrC1 212424792 16 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=-520.000000 s mm10.chr1_GL456221_random 121509 2 + 206961 --AA s felCat5.chrC1 212424808 2 + 221441202 TC-- i felCat5.chrC1 I 16 I 102 e otoGar3.GL873532 28825110 0 - 32117204 C e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4139950 0 - 10418462 C e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94051731 0 + 106825570 C e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3647402 0 + 6458163 C e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e hg19.chr2 231116830 0 + 243199373 C e calJac3.chr6 146729578 0 + 158406734 C e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I e rn5.chr9 92368637 0 + 121549591 C a score=91198.000000 s mm10.chr1_GL456221_random 121511 127 + 206961 GAAAAAAATATCTCA--------------------------------------------------------GAGAATTAGAAAGCATGTGAATGTAGA-----------------ATGTAGT--------------ATTATATAAGAGTGGGGAGCC-----CCAGAAGAACAGAGCTAGGAAATATTAACACAGAGGCCA-TGT-AAAATGTAGTACGTA--------- s rn5.chr9 92368637 117 + 121549591 ----AAAATATCCCA--------------------------------------------------------GAGAATTAGAAAGTGTGTGAATGCAG------------------------C--------------GCTACATGCGATAGAAGAGCC-----CCAGACGGATAGAATTCGGAAATATTAACACAGAGGCAAATGT-AAAATGTAGTGCATA--------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4139950 118 - 10418462 ----GGAA-ATCACA--------------------------------------------------------GAAAAT--------ATGTGAATGTAAT-----------------C-----T--------------TCCATATGAGATAGGAGATAC-----CCAGAAGAGTAGAGCCTGAAGAGGTGAACACAGAGGCAA-TGTGAAAAAGTAG-ACACAGAGAATCAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116830 114 + 243199373 ----AAATTATT-----------------------------------------------------------GAGAGTTAGAAAGTATGTAAATATAAT-----------------C-----C--------------ATGATACGAGATAGGAGATAT-----CCAGAAAAATAGAGCCAGGAAAGATACACAGAGATAGAA-TGT-GCATAGCAG-ATGTA--------- i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3647402 114 + 6458163 ----ACATTATC-----------------------------------------------------------AAGAGTTGGAAAATACTTGAATGTAAT-----------------C-----T--------------ACGATACGAGATAGGAGATAT-----CCAGAAAAATAGAACCAGAAAAGAGAAACAGAGAGGCAA-TAT-GAAAAGTAT-ATGTA--------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94051731 114 + 106825570 ----ACATTATC-----------------------------------------------------------AAGAGTTGGAAAATACTTGAATGTAAT-----------------C-----T--------------ACAATACGAGATAGGAGATAT-----CCAGAAAAATAGGGCCAGAAAAGTGAAACAGGGAGGCAA-TAT-GAAAAGCAT-ATGTA--------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146729578 119 + 158406734 ----ACATTATC-----------------------------------------------------------AAGAGTTGGAAAATGCTTGAATGTAAT-----------------C-----T--------------ACAATACGAGATAGGAGATATAAAAAAAAAAAAAATAGAGCCAGAAAAGAGAAACAGAGAGGCAA-TAC-GAAAAGTAT-GCGTA--------- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28825110 204 - 32117204 ----AAATCATCACCACACTGTACCCCAGAAGTGCATTAATGTACATAGTTACCATTCAATAAAAAAAAAAAAGAGCTAGCAAATATGTGAAAGAAAAGAATTTAAAAAAAGAAAA-----TAATAAATGTTATCTTCTATATGAGATAGGAGATAC-----CCAGAAAAATAGAGCTAAAAGAGATAAACAGAGAGGCAA-TGT-GAAAAATAG-ATACA--------- i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e felCat5.chrC1 212424810 102 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=-900.000000 s mm10.chr1_GL456221_random 121638 1 + 206961 C s rn5.chr9 92368754 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140068 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116944 1 + 243199373 G i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3647516 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94051845 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146729697 1 + 158406734 G i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28825314 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212424912 1 + 221441202 C i felCat5.chrC1 I 102 I 2511 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=717.000000 s mm10.chr1_GL456221_random 121639 3 + 206961 TAC s rn5.chr9 92368755 3 + 121549591 TGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140069 3 - 10418462 GAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116945 3 + 243199373 CAT i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3647517 3 + 6458163 CAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94051846 3 + 106825570 CAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146729698 3 + 158406734 CAT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28825315 3 - 32117204 TGC i otoGar3.GL873532 C 0 I 9 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 107881 1288 + 176633 I a score=-6653.000000 s mm10.chr1_GL456221_random 121642 2 + 206961 -AG s rn5.chr9 92368758 2 + 121549591 -AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140072 2 - 10418462 -GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116948 1 + 243199373 -A- i hg19.chr2 C 0 I 10 s nomLeu2.GL397366 3647520 1 + 6458163 -A- i nomLeu2.GL397366 C 0 I 10 s rheMac3.chr12 94051849 1 + 106825570 -A- i rheMac3.chr12 C 0 I 10 s calJac3.chr6 146729701 1 + 158406734 -A- i calJac3.chr6 C 0 I 10 s micMur1.scaffold_3075 109169 2 + 176633 GG- i micMur1.scaffold_3075 I 1288 I 397 s otoGar3.GL873532 28825327 2 - 32117204 GG- i otoGar3.GL873532 I 9 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=42412.000000 s mm10.chr1_GL456221_random 121644 82 + 206961 AGGTAAAGGTGGATGATGAAGAAGAC-AGCAGATTC--------------------CTGGGAGAGAAA---ATCTAATGCTAGCGAGATGTGCAAAGACCTTCCC---------------A s rn5.chr9 92368760 82 + 121549591 AGGTAAAGACAGGTGACCAAGAAGAC-AGCAAATGC--------------------CAGGGAGAGAAA---AGCTAACGATAGCGAGAGGCACAAAGGCCTTCCC---------------A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140074 97 - 10418462 AGAAAAAGGCAGATAACCATGGAGAC-TGGAAATGT--------------------CAGGGAGAAGAT---CCAGAAAGTCAAGGAGAAGCACGGAGGCCCTTTATGAGGTGTAGCAATGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231116959 79 + 243199373 AGAAAGAGACAGATATTCAGGGA------GAGATGT--------------------TTGGAAGAGAAA-GTCCACAGAGCCAAAGAGAAGGACAGTTGCCTTCAT---------------A i hg19.chr2 I 10 I 1 s nomLeu2.GL397366 3647531 77 + 6458163 AGGAAGAGACAG----TAAGGGAG---AGGAGATGT--------------------TAAGAAGAGAAA-GTCCAGAAAGCCGAAAAGAACCACAGATGCCTTCAT---------------- i nomLeu2.GL397366 I 10 C 0 s rheMac3.chr12 94051860 78 + 106825570 AGGAAAAAACAG----TAAGGGAG---AGGAGATGT--------------------TAAGAAGAGAAA-GTCCAGAAAGCCAGAAAGAACCACAGATGCCTTCAC---------------A i rheMac3.chr12 I 10 I 377 s calJac3.chr6 146729712 82 + 158406734 AGAAAGAGACAGATAGTAAGGGAG---GGGAGATGT--------------------TAAGAAGAGAAA-GTCCAGAAAGCTGAGGAGAACTACAGATATCTCCAT---------------A i calJac3.chr6 I 10 I 15 s otoGar3.GL873532 28825329 100 - 32117204 AGAAAAAGATAGATAATCAAGGAGGCAGGGAGAGTTAAACAGCTGCATTTATAATGTAATAATAGAAACATACACACTATTAAAA------GCAGAGGCTACCAC---------------A i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109171 397 + 176633 I a score=275.000000 s mm10.chr1_GL456221_random 121726 11 + 206961 AGTACCATCTT s rn5.chr9 92368842 11 + 121549591 AGTTCCATTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140171 11 - 10418462 AAATGTGTATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231117039 11 + 243199373 AGTAGCATTCT i hg19.chr2 I 1 I 5484 s calJac3.chr6 146729809 11 + 158406734 AGTATCACTAG i calJac3.chr6 I 15 C 0 s otoGar3.GL873532 28825429 10 - 32117204 -ATAGCAAACA i otoGar3.GL873532 C 0 I 1 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94051938 377 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3647608 0 + 6458163 C e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109171 397 + 176633 I a score=-5340.000000 s mm10.chr1_GL456221_random 121737 15 + 206961 TAACT--GGTACTAACC s rn5.chr9 92368853 15 + 121549591 CAGCT--GGTATTAACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140182 17 - 10418462 CAACCAAAGGCTGAACT i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3647608 10 + 6458163 -------AGAGTAATAA i nomLeu2.GL397366 C 0 I 1 s calJac3.chr6 146729820 11 + 158406734 ------TAGAAGGGGCC i calJac3.chr6 C 0 I 330 s otoGar3.GL873532 28825440 11 - 32117204 ------AAGCCTGAATT i otoGar3.GL873532 I 1 I 4 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94051938 377 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119452121 2174 + 131632457 I e panTro4.chr2B 235497229 3096 + 247518478 I e hg19.chr2 231117050 5484 + 243199373 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109171 397 + 176633 I a score=15535.000000 s mm10.chr1_GL456221_random 121752 8 + 206961 AAGTTATT s rn5.chr9 92368868 8 + 121549591 AAGTTGTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140199 8 - 10418462 CATTGTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122534 8 + 243199373 AATTTATT i hg19.chr2 I 5484 I 1 s panTro4.chr2B 235500325 8 + 247518478 AATTTATT i panTro4.chr2B I 3096 I 1 s gorGor3.chr2B 119454295 8 + 131632457 AATTTATT i gorGor3.chr2B I 2174 I 1 s nomLeu2.GL397366 3647619 8 + 6458163 AAGATATC i nomLeu2.GL397366 I 1 I 368 s rheMac3.chr12 94052315 8 + 106825570 AATTTATT i rheMac3.chr12 I 377 I 1 s calJac3.chr6 146730161 8 + 158406734 AATTTATT i calJac3.chr6 I 330 I 1 s otoGar3.GL873532 28825455 6 - 32117204 --TTTTTT i otoGar3.GL873532 I 4 I 1 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109171 397 + 176633 I a score=226484.000000 s mm10.chr1_GL456221_random 121760 151 + 206961 TTAAACTAATGAAGAACTATGCTTGTGAGTCC--AATTCTCTCAGAAT------------TGTAGAGGAAATGTGCA-AGAATTGAACTGA-GCCAATTG----------------------------------------------GTGGAT-----------------------CTTCATAAGTGGCTATGTTTGTGTGTGGGGGGGCTGCTGGTTGATTTCT---AGTAGG-------CAAGTA s rn5.chr9 92368876 149 + 121549591 TTAAACTCAGGAAGAGCTATGTTTGTGAGTCC--CATTCTCTTAGAATGGACACTGGAGCTGTAGAGTATATATGCA-ATCATCGAACTGA-GC-AATTG----------------------------------------------GTGAAG-----------------------CTTGATAAGGGGCTGTG-------------GAGGGACTGGTTGATTTCT---AGTGGG-------CAAGTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140207 157 - 10418462 TTTAACCGAGGAAGAATTGTGCTTATGAGTCC--AGTT-TCTCTAAAT-AGCACTCCTACTGTAGAATGTTTGGGGAGAGTGTGGAGCTCA-GG-GATTG----------------------------------------------GAGGAT-----------------------CTTTGGAAATGGCCTTGCA-----------TGGGGACTAGCTGACCCTT---AGTGAGAGCAGGCTAACGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122543 142 + 243199373 TTCAGTTAAGGGATAGTTGTGCTTGTGGGTCA--GTTTCTCTGAACAG---------------AGAACGTTTGTGGA-AGTGTGGATCTCG-GT-GACTG----------------------------------------------GCGGC------------------------CTTCAAAAGTGAGATTTGT-----------TAGTGGTTAGCTGACCTTT---AGTGAAAGCAGGGTCACTG i hg19.chr2 I 1 C 0 s panTro4.chr2B 235500334 142 + 247518478 TTCAATTAAGGGATAGTTGTGCTTGTGGGTCA--GTTTCTCTGAACAG---------------AGAACGTTTGTGGA-AGTGTGGATCTCG-GT-GACTG----------------------------------------------GCGGC------------------------CTTCAGAAGTGAGATTTGT-----------TAGTGGTTAGCTGACCTTT---AGTGAAAGCAGGGTCACTG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119454304 142 + 131632457 TTCAGTTAAGGGATAGTTGTGCTTGTGGGTCA--GTTTCTCTGAACAG---------------AGAACGTTTGTGGA-AGTGTGGATCTCG-GT-GACTG----------------------------------------------GCGGC------------------------CTTCAGAAGTGAGATTTGT-----------TAGTGGTTAGCTGACCTTT---AGTGAAAGCAGGGTCACTG i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3647995 142 + 6458163 TTCAATTAAGGGACAGTTGCGCTTGTGGGTCA--GTTTCTCTGAACAG---------------AGAACGTTTGTGGA-AGTGTGGATCTTG-GT-GATTG----------------------------------------------GCAGC------------------------CTTCAGAAGTGAGATTTGT-----------TAGTGGTTAGCTGACCTTT---AGTGAAAGCAGGGTCACTG i nomLeu2.GL397366 I 368 C 0 s rheMac3.chr12 94052324 141 + 106825570 TTCAATTAAGGGACAGTTGCACTTGTGGGTCA--GTTTCTCTGACCAG---------------AGAACGTTTGTGGA-AGTGTGGATCTTG-GT-GACTG----------------------------------------------GTGGC------------------------CTTCAGAAGTGAGATTTGT-----------TAGTGGTTAGCTGACTTTT---AGTGAAAGCA-GGTCACTG i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146730170 144 + 158406734 TTCAATTAAGGGACAGTTGTGCTTGTGGGCCACTGTTTCTCTGAACAG---------------AGAATGTTTGTGGA-AGTGTGGATCTCA-GT-GATTG----------------------------------------------GCAGC------------------------CTTCAGAAGTGAGATTTGT-----------TAGTGGTTAGTTGACTTTT---AGTGAAAGCAGGGTCACTG i calJac3.chr6 I 1 C 0 s otoGar3.GL873532 28825462 225 - 32117204 TCCAACTAAGAGACATTTGTGCTTGTAGGTCA-TGTATCTCTAAACAA--ATACTCCTATTTTAGAGTGTTTGGTGA-AGTGTGGGTTCAGTGA-GATTGTTTAGGGGTTAGTTGACCTTTAGCAATGAAAGTAGAGGACTAGAGTGCGGCTGTTACTGCTACGTTGACTTTAAATCTCAGAAGTGAGATTGTT-----------TAGGGGT----TGACCTTTAGCAGTGAAAGTAGGGG-ACTC i otoGar3.GL873532 I 1 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_409 27024 3449 - 380355 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109171 397 + 176633 I a score=174820.000000 s mm10.chr1_GL456221_random 121911 78 + 206961 GAATGTGG-CTGTTCCTGATTGGTGGCTGTCCAGAAGTATGACTATATAAATCATCAGTTGGCTTGTAGA-AG---TTCAT-TG s rn5.chr9 92369025 79 + 121549591 GAGTCTGG-CTGTTCCTGATTGGTGGCGGTTCAGAAGCATGACTGTATGAATCATTGGTTGGCTTGTACA-AG---CCCATCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140364 78 - 10418462 GAGCATGGCCCCTTCATCTCTGCTGACTGT-CAGAATCTTGGGGATGTG-ATGATGGGCTGGCTTTCAGA-GG---CCTGTGTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122685 78 + 243199373 GAGTGTGG-CTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAATGGTTGGCTGGCTTTCAGA-GG---CCTGTGT- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235500476 78 + 247518478 GAGTGTGG-CTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAATGGTTGGCTGGCTTTCAGA-GG---CCTGTGT- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119454446 78 + 131632457 GAGTGTGG-CTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAATGGTTGGCTGGCTTTCAGA-GG---CCTGTGT- i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3648137 78 + 6458163 GAGTGTGG-CTGTTACTGACTGTCTGACTTTCAGAAGCATGGGGAAGTCAGTGGTTGGCTGGCTTTCAGA-GG---CCTATGT- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94052465 78 + 106825570 GAGTGTGG-CTGTTACTAACTGGCTGACTTTCAGAAGCATGGGGAAGTGAATAGTTGGCTGGCTTTCAGA-GG---CCTGTGT- i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146730314 81 + 158406734 CAGTGTGG-CTGTCACTGATTGGGTGAGTTTCAGAGGCATGGGGAAGTGAATAGTTTGCTGGCTTTCAGA-GGCCACCTGTGT- i calJac3.chr6 C 0 I 1 s otoGar3.GL873532 28825687 72 - 32117204 GAGTGTGG-CTGTTACTGCTGGGTTGACTTTTGGAAGTGTGGGTAGATGAATGGCTGGCTGGTTTTCAGA-GG---C------- i otoGar3.GL873532 C 0 C 0 s pteVam1.scaffold_9232 27886 78 + 60856 GAGTGTGG-CTGTTGCCGATTGGCCCATTTTGAGAAGTGTAAGGCTGTCACTGATCAGCTTGTTTAAATATAG---TTAATG-- i pteVam1.scaffold_9232 T 9783 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109171 397 + 176633 I a score=9725.000000 s mm10.chr1_GL456221_random 121989 4 + 206961 CTGG s rn5.chr9 92369104 4 + 121549591 CTGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140442 4 - 10418462 CTGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122764 4 + 243199373 CTGG i hg19.chr2 I 1 C 0 s panTro4.chr2B 235500555 4 + 247518478 CTGG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119454525 4 + 131632457 CTGG i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3648216 4 + 6458163 CTGG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94052544 4 + 106825570 CTGG i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146730396 4 + 158406734 CTGG i calJac3.chr6 I 1 C 0 s micMur1.scaffold_3075 109568 3 + 176633 CTG- i micMur1.scaffold_3075 I 397 I 2789 s pteVam1.scaffold_9232 27964 3 + 60856 ATG- i pteVam1.scaffold_9232 C 0 C 0 e otoGar3.GL873532 28825759 0 - 32117204 C e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=165276.000000 s mm10.chr1_GL456221_random 121993 92 + 206961 ATGATTAATCATTAAAC--TTAATGATTAATTAGGA------------TTATTCTGGTTGCTGCTTCTTTAAAGAATCATAGATTAATGTATTTC--CTTAGGA-GTAT s rn5.chr9 92369108 84 + 121549591 A--------CTTTAAGC--TCAATGATTAATTAGGA------------TTATTCTGGTTGCTGCTTCTTTATATAATCAAGGAATAATGCATTTC--CCTAGGA-GTAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140446 85 - 10418462 A--------CA-GAAGCTATCATTGACTAATTGGGA------------TGATTCTGGCT-TTATTTGTTCCTGTGGTCAAAGAATAATGAGTTTT--CCTAGGACCTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122768 84 + 243199373 ---------CCAGAAGCTATTGTTGATTAATTGGGA------------TGATTCTGGTTGTTA-TTGACCATATGGCCAAACAATAATGAGTTTT--CCTAGAA-GTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235500559 84 + 247518478 ---------CCAGAAGCTATTGTTGATTAATTGGGA------------TGATTCTGGTTGTTA-TTGACCATATGGCCAAACAATAATGAGTTTT--CCTAGAA-GTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454529 84 + 131632457 ---------CCAGAAGCTATTGTTGATTAATTGGGA------------TGATTCTGGTTGTTA-CTGACCATATGGCCAAACAATAATGAGTTTT--CCTAGAA-GTGT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3648220 68 + 6458163 ---------CCAGAAGCTATTGTTGATTAATTGGAA------------TGATTCTGATTGTTA-TTGACCATATGGCCAAAC------------------AGAA-GTGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94052548 84 + 106825570 ---------CCAGAAGCTGTTGTTGATTAATTGGGA------------TGATTCTGGTTGTTA-TTGACCATATGGCCAAACAATAATGAGTTTT--CATAGAA-GTGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146730400 84 + 158406734 ---------CCAGAAGCTATCATTGATTAATTGGGA------------CGATTCTGGTTGTAA-TTGTCCATATGGCTAAACAATAATGAGTTTT--CCTAGAA-GTGT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28825759 84 - 32117204 ---ATGCGTACTGAAGCTATCTTTCCTTCATTGAGA------------TAATTTTGGTTGTTATTTGTTCATATGATCAAA-------GAGTTTT--CCTAAGA-GTGT i otoGar3.GL873532 C 0 I 1 s pteVam1.scaffold_9232 27967 96 + 60856 ------------TTAGTAGTTGTTGGCCATTTGGAATGAGTTTTAAAGTGATCCTGGTAGTTTCTTGTTGCAATTTTCAAAGAATAGGTAGTTTGAATCTAGAA-GAAT i pteVam1.scaffold_9232 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=30484.000000 s mm10.chr1_GL456221_random 122085 11 + 206961 AGGAACTTTTA s rn5.chr9 92369192 11 + 121549591 AGGAACTTTTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140531 11 - 10418462 AGGAACTTTGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122852 11 + 243199373 AGCAACTTTCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235500643 11 + 247518478 AGCAACTTTCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454613 11 + 131632457 AGCAACTTTCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3648288 11 + 6458163 AGGAACTTTCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94052632 11 + 106825570 AGGGACTTTCA i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28825844 11 - 32117204 GGAAACTTTTA i otoGar3.GL873532 I 1 C 0 s pteVam1.scaffold_9232 28063 11 + 60856 ATGATCTTTTA i pteVam1.scaffold_9232 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=1179.000000 s mm10.chr1_GL456221_random 122096 1 + 206961 A s rn5.chr9 92369203 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140542 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122863 1 + 243199373 A i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3648299 1 + 6458163 A i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94052643 1 + 106825570 A i rheMac3.chr12 C 0 I 7448 s otoGar3.GL873532 28825855 1 - 32117204 A i otoGar3.GL873532 C 0 I 2 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28074 0 + 60856 C e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=-2377.000000 s mm10.chr1_GL456221_random 122097 3 + 206961 AGA s rn5.chr9 92369204 3 + 121549591 AAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140543 1 - 10418462 A-- i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3648302 1 + 6458163 A-- i nomLeu2.GL397366 I 2 C 0 s otoGar3.GL873532 28825858 1 - 32117204 A-- i otoGar3.GL873532 I 2 C 0 s pteVam1.scaffold_9232 28074 1 + 60856 A-- i pteVam1.scaffold_9232 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=987.000000 s mm10.chr1_GL456221_random 122100 7 + 206961 tttaatt s rn5.chr9 92369207 7 + 121549591 TATTATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140544 1 - 10418462 ------T i speTri2.JH393335 C 0 C 0 s otoGar3.GL873532 28825859 7 - 32117204 TCAGATT i otoGar3.GL873532 C 0 C 0 s pteVam1.scaffold_9232 28075 7 + 60856 TTTTATT i pteVam1.scaffold_9232 C 0 C 0 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3648303 0 + 6458163 C e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=753.000000 s mm10.chr1_GL456221_random 122107 2 + 206961 ct s rn5.chr9 92369214 2 + 121549591 TT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140545 2 - 10418462 CT i speTri2.JH393335 C 0 C 0 s pteVam1.scaffold_9232 28082 2 + 60856 CT i pteVam1.scaffold_9232 C 0 I 9468 e otoGar3.GL873532 28825866 0 - 32117204 C e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3648303 0 + 6458163 C e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=1070.000000 s mm10.chr1_GL456221_random 122109 64 + 206961 gtttt----aattctgtgtatgtatgcgtgtctaagtgtggtttgtg------catgtgcatatgaggaaatcc s rn5.chr9 92369216 74 + 121549591 TTTATTAAAAAGTTCGTGTATGCATGTGTGTCTAAGTGTGGTttgtgtatgtacatgtgcacgtgaggaactct i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140547 20 - 10418462 GTTTC------------------------------------------------------CCCATGAGGAAGTCC i speTri2.JH393335 C 0 C 0 e otoGar3.GL873532 28825866 0 - 32117204 C e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3648303 0 + 6458163 C e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=7952.000000 s mm10.chr1_GL456221_random 122173 142 + 206961 tagaggccaggagaggatgttgtaaccagagtagagttgcaggtggttgtgatccatctgatactggtgctgggaaccaaactaaggtcctctggaagatcaatggaagctctacacta---agccatctccccagATCCAGTAC s rn5.chr9 92369290 144 + 121549591 tagaggccagaagagggtgtggtagtcagaatagagttacaggcagttgtggttcacctgatactggtgctgggaacctaactaagtgtctctggaagatcagtacacattcttcactgctgagccatctctctagTGTCGGTA- i rn5.chr9 C 0 C 0 e otoGar3.GL873532 28825866 0 - 32117204 C e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4140567 0 - 10418462 C e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3648303 0 + 6458163 C e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e calJac3.chr6 146730484 0 + 158406734 C e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=2468.000000 s mm10.chr1_GL456221_random 122315 11 + 206961 AGGAACTTTCC s rn5.chr9 92369434 10 + 121549591 -GGAAATTTCC i rn5.chr9 C 0 C 0 s calJac3.chr6 146730484 11 + 158406734 AGGAACTTTCC i calJac3.chr6 C 0 C 0 e otoGar3.GL873532 28825866 0 - 32117204 C e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4140567 0 - 10418462 C e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3648303 0 + 6458163 C e gorGor3.chr2B 119454624 0 + 131632457 C e panTro4.chr2B 235500654 0 + 247518478 C e hg19.chr2 231122864 0 + 243199373 C e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=910.000000 s mm10.chr1_GL456221_random 122326 1 + 206961 A s rn5.chr9 92369444 1 + 121549591 A i rn5.chr9 C 0 C 0 s panTro4.chr2B 235500654 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454624 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s calJac3.chr6 146730495 1 + 158406734 A i calJac3.chr6 C 0 C 0 e otoGar3.GL873532 28825866 0 - 32117204 C e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4140567 0 - 10418462 C e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3648303 0 + 6458163 C e hg19.chr2 231122864 0 + 243199373 C e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=-741.000000 s mm10.chr1_GL456221_random 122327 3 + 206961 TTT s rn5.chr9 92369445 3 + 121549591 TTC i rn5.chr9 C 0 C 0 s hg19.chr2 231122864 2 + 243199373 TT- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235500655 2 + 247518478 TT- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119454625 2 + 131632457 TT- i gorGor3.chr2B C 0 I 1 s calJac3.chr6 146730496 2 + 158406734 TT- i calJac3.chr6 C 0 I 1 e otoGar3.GL873532 28825866 0 - 32117204 C e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4140567 0 - 10418462 C e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3648303 0 + 6458163 C e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=13374.000000 s mm10.chr1_GL456221_random 122330 9 + 206961 TTGGTTTCT s rn5.chr9 92369448 9 + 121549591 TTGGTTTCT i rn5.chr9 C 0 C 0 s hg19.chr2 231122867 9 + 243199373 TCAGTTTCC i hg19.chr2 I 1 C 0 s panTro4.chr2B 235500658 9 + 247518478 TCAGTTTCC i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119454628 9 + 131632457 TCAGTTTCC i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3648303 9 + 6458163 TCAGTTTCC i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146730499 9 + 158406734 TCAGTCTCC i calJac3.chr6 I 1 C 0 e otoGar3.GL873532 28825866 0 - 32117204 C e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4140567 0 - 10418462 C e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=16457.000000 s mm10.chr1_GL456221_random 122339 11 + 206961 CTTTTGGGAAG s rn5.chr9 92369457 11 + 121549591 TCCTTGTGATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140567 11 - 10418462 CTTCTAAGAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122876 11 + 243199373 CCTTTAGGAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235500667 11 + 247518478 CCTTTAGGAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454637 11 + 131632457 CCTTTAGGAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3648312 11 + 6458163 CCTTTAGGAAA i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146730508 11 + 158406734 CCTGTAGGAAA i calJac3.chr6 C 0 C 0 e otoGar3.GL873532 28825866 0 - 32117204 C e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=222107.000000 s mm10.chr1_GL456221_random 122350 190 + 206961 TCCATCGTTTGAAGCTTACAAGAGAGACAATTAAGTAGTGTCTGTATTGAAAATGTCTTTTCTGTTAGAGGACACT-GAATCTAAACTCCTAATCCT---ACTTCACTAACTA--AGGGTTATAGAA-CAATGGTTTGAGAGAATTGTGTCTGTGGA--TAGGGAGA----GAAAAGGGAAGTTATAGTAT----TTTAATAAATTA--- s rn5.chr9 92369468 186 + 121549591 GTCATCATTTGAAGCTTACAAGAGAGACAATTAAGTATTGTCTCTATTGAAAATGTCTTTTCTG--------CACT-GAACTTAAACTCCTAAGCAT---ACTTCATTAAGTA--AGGGTTATAGAT-CAACGGGTTGAGAGAATTGTGTCTGTGGA--TAGGGAGA----GAAAAGAGAAGTTATGatatatatttttttaaaaaa--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140578 152 - 10418462 A---------------TGCAAGAAAGGCCATGAAGGTAT-----TATTGGAA---------------GAGGACACT-GGATTAAAACTCCTAGGCTTCTCCCCCCACTGAGTAACAGGGCTGC--------TGGACTGAGTG--TTCAGCCTATGGAAGAAGACAGA----AAAAAGAGAAGTCGTGATA-----TTTAGTAATTAg--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231122887 193 + 243199373 TCTCTCATCTAAAGC-TGCAGGAGGCACCATCAAGTATTTTCCCCATCCAAGATGTCTTTTCTGGAAGAGGACCCT-GGAAACAAAATCCTAGGATT-CCCCTTCACTGAGTA--GGAGTTATAGAGTTGCTAGATTGAGAGTGTTATCCTTGCAAAGGATGACATA----AGAAA---AAGTAATGATG-----TTTTACAATACGTTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235500678 191 + 247518478 TCTCTCATCTAAAGC-TGCAGGAGGCACCATCAAGTATTTTCCCCATCCAAGGTGTCTTTTCTGGAAGA--ACCCT-GGAAACAAAATCCTAGGATT-CCCCTTCACTGAGTA--GGAGTTATAGAGTTGCTAGACTGAGAGTGTTATTCTTGCAAAGGATGACATA----AGAAA---AAGTAATGATG-----TTTTACAATACATTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454648 193 + 131632457 TCTCTCATCTAAAGC-TGCAGGAGGCACCATCAAGTATTTTCCCCATCCAAGATGTCTTTTCTGGAAGAGGACCCT-GGAAACAAAATCCTAGGATT-CCCCTTCACTGAGTA--GGAGTTATAGAGTTGCTAGATTGACAGTGTTATCCTTGCAAAGGATGACATA----AGAAA---AAGTAATGATG-----TCTTACAATATGTTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3648323 193 + 6458163 TCTCTCATCTAAAGC-TGCAGGAGGCACCATCAAGTATCGTCCCCATCCAAGATGTCTTTTCTGGAAGAGAACCCT-GGAAACAAAATCCTAGGATT-CCCCTTTATTGAGTA--GGAGTTACAGAGTTGTTAGATTAAGAGTGTCACCCTTGCAGAGGATGACATA----AGAAA---AAGTAATGATG-----TTTTACAATAAGTTA i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146730519 186 + 158406734 CCTCTCATCTAAAGT-GGCAGGAGGCACCATCCAGCATTGTCCCCATCCAAGATGTATTTTCTGGAAGAGAACGCT-G-------AATCCTAGGATT-CCCCTTCATTGAGTA--GGCATTATAGAGTTGCTACATTGATAGTTTTATCCTTGTGGAGGATGATATA----AGAAA---AAGTAATGATG-----TTTAATAATATGTTA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28825866 185 - 32117204 TCCCTCCTCCAAAGC-TGCAGGAGGGATCCTCAAGTATTGCCCATACCAAAAATATCTTTTCTGGAGAAGCACACTAGGAAAAAAAATTCTAAGATA-CCAGTTCATTGAG--------TTATAGAG-------ATTGAGAGTGTAATGCCTATAGAGGATGACAGAAGACAGAAA---AAGTAATAACA-----TTTATTAATTAGTTA i otoGar3.GL873532 C 0 I 2205 e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=10005.000000 s mm10.chr1_GL456221_random 122540 35 + 206961 CTGGTGTAATA--TAATGCTATACAATTG----------------GTTTTGAT s rn5.chr9 92369654 35 + 121549591 ttGGTTTAAAA--Taatgttatacaatga----------------cttttgat i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140730 53 - 10418462 ttgatcaaatgactaattccttgtggttgtagggctgaggtcacagctttgct i speTri2.JH393335 C 0 C 0 s hg19.chr2 231123080 24 + 243199373 --------ATG--GAATGGCAGACAACTG-------------------TTGAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235500869 24 + 247518478 --------ACG--GAATGGCACACAACTG-------------------TTGAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119454841 24 + 131632457 --------ATG--GAATGGCAGACAACTG-------------------TTGAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3648516 24 + 6458163 --------ATG--GAATGGCAGACAACTA-------------------TTGAA i nomLeu2.GL397366 C 0 I 8955 s calJac3.chr6 146730705 24 + 158406734 --------ATC--GAATAACAGACAACTG-------------------TGGAA i calJac3.chr6 C 0 I 9268 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=3422.000000 s mm10.chr1_GL456221_random 122575 6 + 206961 AGTATT s rn5.chr9 92369689 6 + 121549591 agtatt i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140783 6 - 10418462 gctggt i speTri2.JH393335 C 0 C 0 s hg19.chr2 231123104 6 + 243199373 AGTTTT i hg19.chr2 C 0 I 8665 s panTro4.chr2B 235500893 6 + 247518478 AGTTTT i panTro4.chr2B C 0 I 8600 s gorGor3.chr2B 119454865 6 + 131632457 AGTTTT i gorGor3.chr2B C 0 I 8654 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3648540 8955 + 6458163 I e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=1921.000000 s mm10.chr1_GL456221_random 122581 27 + 206961 CTTTTCCCATCACCAACTCATCCCCTA s rn5.chr9 92369695 27 + 121549591 cttttcttctccccaactcatcccaga i rn5.chr9 C 0 C 0 s speTri2.JH393335 4140789 27 - 10418462 tcttggccagggcttactcaacccaca i speTri2.JH393335 C 0 I 295 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3648540 8955 + 6458163 I e gorGor3.chr2B 119454871 8654 + 131632457 I e panTro4.chr2B 235500899 8600 + 247518478 I e hg19.chr2 231123110 8665 + 243199373 I e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=9127.000000 s mm10.chr1_GL456221_random 122608 196 + 206961 TCCTCTCCAAATTC----------------------------------TGTCTCTTGCCTGTATTTGTGTGTCTCTTGCTCTC----TCTTAAAAAATCAAAACAAAGCGAAAGAACAAAAAAAATACTCAAACAAGAGAAGCCTCCACCCCC----CAAAA---CCACAAAGtttgtgtgatcaactactcctgagtgtggagcccaccctggatggggttgacatacccagtgGTGCTC s rn5.chr9 92369722 224 + 121549591 tACTCTCCAAATtccctctctctctctctctctctctctctctctctctctctctctcCTGTATTTGTGTGTCTCTTGCTCTTAAAATATCAAAAAAAGAAAAAAACCCAAAAGGACAAAAACAA------AACAAGAGAAGCCTCAACCCCCTCGCCAAAAACCCCACAAAGTTTGTGTGATCAACTACTCCTGAGTGTGG-----------GATGGGGTTAACATACACAGTGGCACTC i rn5.chr9 C 0 C 0 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4140816 295 - 10418462 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3648540 8955 + 6458163 I e gorGor3.chr2B 119454871 8654 + 131632457 I e panTro4.chr2B 235500899 8600 + 247518478 I e hg19.chr2 231123110 8665 + 243199373 I e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=1662.000000 s mm10.chr1_GL456221_random 122804 17 + 206961 TAGAGCTT--GACACCCCA s rn5.chr9 92369946 19 + 121549591 TAGAGCTCAAGACACCCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141111 19 - 10418462 CAGTGTTTAACAAAACCCA i speTri2.JH393335 I 295 C 0 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42493846 728 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e rheMac3.chr12 94052644 7448 + 106825570 I e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3648540 8955 + 6458163 I e gorGor3.chr2B 119454871 8654 + 131632457 I e panTro4.chr2B 235500899 8600 + 247518478 I e hg19.chr2 231123110 8665 + 243199373 I e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=277160.000000 s mm10.chr1_GL456221_random 122821 155 + 206961 TAGAAAATAAACGTCTAGATGAGGCACTGATCTTCTCAAGCATATAACAT---T----------ACATTGCTCATCAAGCAAAAGTAGAACATGAAAGTACT-----AAGATAATGAG------CTTAGGAGAGATGGGAGAAGCTACTGTGATTAGGCGAGGCATTCCAGGGAAGGGA s rn5.chr9 92369965 141 + 121549591 TAGAAAATAAGTGCCT------------GATCTTTTCAAGCGAGTAACAT---C----------ACAT-GGTCATCAAGCAGAAGTAGAGCGTGAATGTATT-----AAGATGATCAG------TTTAGGAGAAACAG-AGAGACTACTGTGGTTAGGCAAGGCACTTCCCAGAAGGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141130 161 - 10418462 GAGAAAATAACTGTCTAGATGAGCCACTGATTTCCCCAAGAGAATAATAT---T----------AAATGGGACATCAAATGAAAGTAGAACATAAATGTATG-----AAAGAAAAGAATCTGTCTTTAGATGAGGCTGAAGAGATTATAGTAAATGGATTAGGTGCCACAGGAAGTGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131775 165 + 243199373 TAGAAAATAACTGTCCAGATAAGCCACTGATTTTCCCAAGCAAATAATAT---TTATCTTTATCAAGTGAGACATTAAAC-AAAGCTGAACATAAATATATT-----AAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGATTGTAGTAATCTGGTTAGGAGGTACAGGGAAGTGA i hg19.chr2 I 8665 C 0 s panTro4.chr2B 235509499 165 + 247518478 TAGAAAATAACTGTCCAGATGAGCCACTGATTTTCCCAAGCAAATAATAT---TTATCTTTACCAAATGAGACATTAAAC-AAAGCAGAACATAAATATATT-----AAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGATTGTAGTAATCTGGTTAGGAGGTACAGGGAAGTGA i panTro4.chr2B I 8600 C 0 s gorGor3.chr2B 119463525 165 + 131632457 TAGAAAATAACTGTCCAGATGAGCCACTGATTTTCCCAAGCAAATAATAT---TTATCTTTATCAAATGAGACATTAAAC-AAAGCTGAACATAAACATATT-----AAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGATTGTAGTAATCTGGTTAGGAGGTACAGGGAAGTGA i gorGor3.chr2B I 8654 C 0 s nomLeu2.GL397366 3657495 165 + 6458163 TAGAAAATAACTGTCCAGATGAGCCATTGATTTTCCCAAGCAAATAATAC---TTATCTTTATTAAATGAGACATTAAAC-AAAGTTGAACATAAATATATT-----GAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGATTGTAGTAATCTGGTTAGGAGGGACAGGGAAGTGA i nomLeu2.GL397366 I 8955 C 0 s rheMac3.chr12 94060092 159 + 106825570 TAGAAAATAACTGTCCAGATGAGCCATTGATTTTCCCAAGCAAATAATAT---TTATCT------AATGAGACATTAAAC-AAAGCTGAACATAAATACATT-----AAAAATTTTGG-----CTTTAGGTGAGACTGAAGAGATCGTAGTAATCCGGTTAGGAGGTACAGGGAAGTGA i rheMac3.chr12 I 7448 C 0 s canFam3.chr25 42494574 163 + 51628933 TAGAAAATAATTGTCCAGATGAGCCATTGACTTT-TCAAGTAAATAATATAAATTATTCTTATCAAATGGGACATCAAAC-AAAGCTGAGCATAAATGCATTAAAGAAAAGAATCTGG-----CTTTA---------GAAAAGATTATAGTAATTGGGTTAGACTCCACAGAGAAGTGA i canFam3.chr25 I 728 I 530 e otoGar3.GL873532 28826051 2205 - 32117204 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=36210.000000 s mm10.chr1_GL456221_random 122976 15 + 206961 -CAAGGGCTTTT------------------------ATCA s rn5.chr9 92370106 3 + 121549591 -------------------------------------TCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141291 39 - 10418462 -GTGTAGCTGTTCTGTTTAGTGCTTGCAGATCTTAAatca i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131940 40 + 243199373 GGTATACCTATTTTGTTTATTGCTTGCAGACCTCAAATCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509664 40 + 247518478 GGTATACCTATTTTGTTTATTGCTTTCAGACCTCAAATCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463690 40 + 131632457 GGTATACCTATTTTGTTTATTGCTTGCAGATCTCAAATCA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657660 40 + 6458163 GGTATACCTATTTTGTTTATGGCTTGCAGATCTCAAATCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060251 40 + 106825570 GGTATACCTATTTTGTTTATTGCTTGCAGATCTCAAATCA i rheMac3.chr12 C 0 C 0 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42494737 530 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 129085 6546 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=3574.000000 s mm10.chr1_GL456221_random 122991 7 + 206961 --CATCTAG s rn5.chr9 92370109 7 + 121549591 --CACCTAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141330 7 - 10418462 --cacacag i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131980 7 + 243199373 --TCCGTAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509704 7 + 247518478 --TCCGTAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463730 7 + 131632457 --TCCGTAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657700 7 + 6458163 --TCCATAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060291 7 + 106825570 --TGCATAG i rheMac3.chr12 C 0 C 0 s turTru2.JH478086 135631 7 - 138096 ATTTTGT-- i turTru2.JH478086 I 6546 I 4 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42494737 530 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17866154 220 + 84719076 I e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=2114.000000 s mm10.chr1_GL456221_random 122998 4 + 206961 TCAG s rn5.chr9 92370116 4 + 121549591 TCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141337 4 - 10418462 tgga i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131987 4 + 243199373 TGTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509711 4 + 247518478 TGTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463737 4 + 131632457 TGTA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657707 4 + 6458163 TGTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060298 4 + 106825570 TGTA i rheMac3.chr12 C 0 C 0 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42494737 530 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 135638 4 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=-6511.000000 s mm10.chr1_GL456221_random 123002 6 + 206961 -----GTCCTG s rn5.chr9 92370120 6 + 121549591 -----ACCCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141341 6 - 10418462 -----ggaatg i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131991 5 + 243199373 -----GGTAT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509715 5 + 247518478 -----GGTAT- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463741 5 + 131632457 -----GGTAT- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657711 5 + 6458163 -----GGTAT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060302 5 + 106825570 -----GGTAT- i rheMac3.chr12 C 0 C 0 s turTru2.JH478086 135642 6 - 138096 TTCCTG----- i turTru2.JH478086 I 4 I 7 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42494737 530 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17866154 220 + 84719076 I e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=-662.000000 s mm10.chr1_GL456221_random 123008 7 + 206961 GTG--GCTT s rn5.chr9 92370126 7 + 121549591 GTG--GCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141347 9 - 10418462 ccaatgttc i speTri2.JH393335 C 0 C 0 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42494737 530 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 135648 7 - 138096 I e rheMac3.chr12 94060307 0 + 106825570 C e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3657716 0 + 6458163 C e gorGor3.chr2B 119463746 0 + 131632457 C e panTro4.chr2B 235509720 0 + 247518478 C e hg19.chr2 231131996 0 + 243199373 C e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=-194.000000 s mm10.chr1_GL456221_random 123015 5 + 206961 AGAAT s rn5.chr9 92370133 5 + 121549591 AGACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141356 3 - 10418462 aga-- i speTri2.JH393335 C 0 C 0 s turTru2.JH478086 135655 5 - 138096 TGAAT i turTru2.JH478086 I 7 I 317 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42494737 530 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94060307 0 + 106825570 C e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3657716 0 + 6458163 C e gorGor3.chr2B 119463746 0 + 131632457 C e panTro4.chr2B 235509720 0 + 247518478 C e hg19.chr2 231131996 0 + 243199373 C e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=100.000000 s mm10.chr1_GL456221_random 123020 1 + 206961 G s rn5.chr9 92370138 1 + 121549591 G i rn5.chr9 C 0 C 0 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42494737 530 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4141359 0 - 10418462 C e turTru2.JH478086 135660 317 - 138096 I e rheMac3.chr12 94060307 0 + 106825570 C e equCab2.chr6 17866154 220 + 84719076 I e nomLeu2.GL397366 3657716 0 + 6458163 C e gorGor3.chr2B 119463746 0 + 131632457 C e panTro4.chr2B 235509720 0 + 247518478 C e hg19.chr2 231131996 0 + 243199373 C e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 109571 2789 + 176633 I a score=3985.000000 s mm10.chr1_GL456221_random 123021 3 + 206961 GTT s rn5.chr9 92370139 3 + 121549591 ATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141359 2 - 10418462 -tc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131996 3 + 243199373 ACT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509720 3 + 247518478 ACT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463746 3 + 131632457 ACT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657716 3 + 6458163 ACT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060307 3 + 106825570 ACT i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 112360 2 + 176633 -TT i micMur1.scaffold_3075 I 2789 I 994 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42494737 530 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 135660 317 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=6306.000000 s mm10.chr1_GL456221_random 123024 11 + 206961 GATTATAGA---GA s rn5.chr9 92370142 11 + 121549591 GATTATAGA---GA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141361 14 - 10418462 aactataaactgat i speTri2.JH393335 C 0 C 0 s hg19.chr2 231131999 11 + 243199373 AATGGTCAG---GT i hg19.chr2 C 0 I 4 s panTro4.chr2B 235509723 11 + 247518478 AATGGTCAG---GT i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119463749 11 + 131632457 AATGGTCAG---GT i gorGor3.chr2B C 0 I 4 s nomLeu2.GL397366 3657719 11 + 6458163 AATGTTCAG---GT i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94060310 11 + 106825570 AATGTTCAG---GT i rheMac3.chr12 C 0 I 4 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42494737 530 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 135660 317 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e calJac3.chr6 146730729 9268 + 158406734 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=85717.000000 s mm10.chr1_GL456221_random 123035 44 + 206961 -----------CAAGCACAGATGAATCTTTCAGG-ACCTCTGAAATACATCTGTAA s rn5.chr9 92370153 44 + 121549591 -----------CAAGCACAGGTGAAACTTTCAGG-ACTTCTGAAACACATCTGTGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141375 45 - 10418462 -----------catgcatgggaaaattttttgggaacttctaaaattagtccttgt i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132014 55 + 243199373 TATACATAGATCATGTGTcagagaattttccagg-acttctaaaattagtccttct i hg19.chr2 I 4 C 0 s panTro4.chr2B 235509738 55 + 247518478 TATACATAGATCATGTGTcagagaattttccagg-acttctaaaattagtccttct i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119463764 55 + 131632457 TATACATAGATCATGTGTcagagaattttccagg-acttctaaaattagtccttct i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 3657734 55 + 6458163 TACACATAGATCATGTGTCAGAGAATTTTCCAGG-ACTTCTCAAATTAGTCCTTCT i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94060325 55 + 106825570 TACACATAGATCATGTGTCAGggaattttccagg-acttctaaaattagtccttct i rheMac3.chr12 I 4 C 0 s calJac3.chr6 146739997 45 + 158406734 TATACATAAATCATGGGTCAGgga-----------acttctaaaatcaatctttct i calJac3.chr6 I 9268 C 0 e otoGar3.GL873532 28826051 2205 - 32117204 I e canFam3.chr25 42494737 530 + 51628933 I e ailMel1.GL192536.1 1051049 1041 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 135660 317 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=178107.000000 s mm10.chr1_GL456221_random 123079 62 + 206961 CCACA-----TAATCTGGAAGTTCCATTTTCAAAA-AGATCTCAACTT--CACAGTTG-AGGGG--CTTTGTC s rn5.chr9 92370197 51 + 121549591 TCGAG-----TAATCTGACAGTTCTATTTGCAACA------------T--CAAGGTTG-AGGGG--CTTTGTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141420 71 - 10418462 gtatgttttttaatctgtcagtcccatttgcagaagagatctctacctagtacatctgtaggga--tattact i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132069 71 + 243199373 tctgaacctttaatctggtagttctatttgcagaatagatccctacctattacatttatagagg--tTTTGTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509793 71 + 247518478 tctgaacctttaatctggtagttctatttgcagaacagatccctacctattacatttatagagg--tTTTGTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463819 71 + 131632457 tctgaacctttaatctggtagttctatttgcagaatagatccctacctattacatttatagagg--tTTTGTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657789 71 + 6458163 GCTGAACCTTTAATCTGGTAGTTCTATTTGCAGAATAGATCCCTACCTATTACATTTATAGAGG--TTTTGTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060380 71 + 106825570 tctgaacctttaatctggtagttccatttgcagaatagatccctgcctattacatttatagagg--ttttgtt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740042 71 + 158406734 tctgaacacttaatctggtagttccgtttgcagaataaatccctacctattacatttatagagg--tTTTATT i calJac3.chr6 C 0 C 0 s canFam3.chr25 42495267 66 + 51628933 -----ccccTTAATCTGGTAGTTTCATTTGCAGAATAGATCCTTACTTATTAAATTTATAAGGA--TTTTTTT i canFam3.chr25 I 530 I 6 s ailMel1.GL192536.1 1052090 67 - 2169676 -----ccccTTAATCTGGTAGTTTCGTTCGCAGAATAGATCCTT-CCTATTAGATATATAGGGATTTTTTTTT i ailMel1.GL192536.1 I 1041 I 6 e otoGar3.GL873532 28826051 2205 - 32117204 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 135660 317 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=278187.000000 s mm10.chr1_GL456221_random 123141 99 + 206961 AAAGAAAGCAACATTCCCCAGAGA----ATAGTCT-------AGAATGACAA-GTACTGGTGGGGACGTGGAGCCACTAGAGAA--CCTCCTCCCTTG--TTATATAGAGCTACT s rn5.chr9 92370248 96 + 121549591 AAAGAAAACAATGTTCCCCAGAGA----ATAGTCT-------AGAATGACAA-ATACTAG---GGATGTGGAAACACTGGAGAA--CCTCCTCTCTTG--TTTTATAGAGCTACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141491 110 - 10418462 aaagaaaagaaagCTATGTAGATATTTTGTAATTTTGTTCTGAAAGTAACAG-TTTCTGGTTGGGATATGGGAACATCTGGAGA--TTTCCCCCCTTC--TTTTACAGAAGTACT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132140 99 + 243199373 ---GAAAACAGTGTTCCTCAGATA----ATGGTCT------GAAAGTAATAGATTACTGGTTGAGATGTGGAAACATTCAGTGA-TTTTTTTCTCTTC--TTTTATAGACCTACT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235509864 99 + 247518478 ---GAAAACAGTGTTCCTCAGATA----ATGGTCT------GAAAGTAATAGATTACTGGTTGAGATGTGGAAACATTCAGTGA-TTTTTTTCTCTTC--TTTTATAGACCTACT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119463890 99 + 131632457 ---GAAAACAGTGTTCCTCAGATA----ATGGTCT------GAAAGTAATAGGTTACTGGTTGAGATGTGGAAACATTCAGTGA-TTTTTTTCTCTTC--TTTTATAGACCTACT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3657860 99 + 6458163 ---GAAAACAGTGTTCCTCAGATA----ATGGTCT------GAAAGTAATAGGTTACTGGTTGAGACGTGGAAACATTCAGTGA-TTTTTTTCTCTTC--TTCTATAGACCTACT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060451 99 + 106825570 ---gaaaagagtgttcctcagata----atggtct------gaaagtaacgggttactggttgagacgtgggaACATTTGGTGA-CTTTTTTCTCTTC--TTTTATAGATCTACT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740113 100 + 158406734 ---GAAAAGAGTGTTCCTCAGATG----ATGGTCT------GAAAGTAACAGGTTCCTGGTTGAGACATGAGAACATTCGGTGATTTTTTTTCTCTTC--TTTGATAGATCTACT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28828256 103 - 32117204 aaaGAAAGGAACATGCCTCAGATA----ATAGTCT------GAAAGCTTCAG-TTACAGATTGGGGCAGGGAAACATTTGGTGA-TTTTTTTCCCCTCTTTTTTATAGAGCTATA i otoGar3.GL873532 I 2205 C 0 s canFam3.chr25 42495339 93 + 51628933 ---AAAGAAAGAAACTGTTAGATG----ATGGTCT------GAAAGTAGCAG-TTATTGGTTGGGACATGGGAATTATTGGTCA-TCTTTCTCTC-------TTACAGAAATACT i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1052163 95 - 2169676 ---AAAAAAAGAAACTGTTAGATG----ATGGTCT------GAAAGTAGCAA-TTACCAGTTGAGACATGAGAACTTTTGGTCA-TCATTCTCTC-----TTTTATAGAAATACT i ailMel1.GL192536.1 I 6 I 58 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 135660 317 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=33324.000000 s mm10.chr1_GL456221_random 123240 12 + 206961 TGACAAACATGT s rn5.chr9 92370344 12 + 121549591 TGACAAACATGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141601 12 - 10418462 TACCAAATGTGT i speTri2.JH393335 C 0 I 284 s hg19.chr2 231132239 12 + 243199373 TGTCAAATGTGT i hg19.chr2 C 0 I 19 s panTro4.chr2B 235509963 12 + 247518478 TGTCAAATGTGT i panTro4.chr2B C 0 I 19 s gorGor3.chr2B 119463989 12 + 131632457 TGTCAAATGTGT i gorGor3.chr2B C 0 I 19 s nomLeu2.GL397366 3657959 12 + 6458163 TGTCAAATGTGT i nomLeu2.GL397366 C 0 I 19 s rheMac3.chr12 94060550 12 + 106825570 TGTCAAATGTGT i rheMac3.chr12 C 0 I 19 s calJac3.chr6 146740213 12 + 158406734 TGTCAAATGTGT i calJac3.chr6 C 0 I 19 s otoGar3.GL873532 28828359 12 - 32117204 CATTAAATCTGT i otoGar3.GL873532 C 0 I 327 s canFam3.chr25 42495432 6 + 51628933 -ATCAAA----- i canFam3.chr25 C 0 C 0 e ailMel1.GL192536.1 1052258 58 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH478086 135660 317 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=12323.000000 s mm10.chr1_GL456221_random 123252 46 + 206961 ------------------------AAAGCCCCCGTCCTGCGCCGCCCCCCCTCCCGGCATTCCATTGTGA s rn5.chr9 92370356 22 + 121549591 ------------------------CAAGTCCCC------------------------CACCCCATTGTGA i rn5.chr9 C 0 C 0 s hg19.chr2 231132270 18 + 243199373 ------------------------AAAACCTCC----------------------------CCATTGCAA i hg19.chr2 I 19 C 0 s panTro4.chr2B 235509994 18 + 247518478 ------------------------AAAACCTCC----------------------------CCATTGTAA i panTro4.chr2B I 19 C 0 s gorGor3.chr2B 119464020 18 + 131632457 ------------------------AAAACCTCC----------------------------CCATTGTAA i gorGor3.chr2B I 19 C 0 s nomLeu2.GL397366 3657990 18 + 6458163 ------------------------AAAACTTCC----------------------------CCATTGTAA i nomLeu2.GL397366 I 19 C 0 s rheMac3.chr12 94060581 18 + 106825570 ------------------------AAAACTTCC----------------------------CCGTCGTAA i rheMac3.chr12 I 19 C 0 s calJac3.chr6 146740244 18 + 158406734 ------------------------AAAAATTCC----------------------------CCATGGTAA i calJac3.chr6 I 19 C 0 s canFam3.chr25 42495438 40 + 51628933 TGCACTGTTTACTTTTGATGTGTCCGGAGCTCT----------------------------CCTTTGA-- i canFam3.chr25 C 0 C 0 e otoGar3.GL873532 28828371 327 - 32117204 I e ailMel1.GL192536.1 1052258 58 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4141613 284 - 10418462 I e turTru2.JH478086 135660 317 - 138096 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=-8598.000000 s mm10.chr1_GL456221_random 123298 3 + 206961 --AGT s rn5.chr9 92370378 3 + 121549591 --AGT i rn5.chr9 C 0 C 0 s hg19.chr2 231132288 3 + 243199373 --GCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510012 3 + 247518478 --GCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464038 3 + 131632457 --GCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658008 3 + 6458163 --GCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060599 3 + 106825570 --GCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740262 3 + 158406734 --GCC i calJac3.chr6 C 0 C 0 s turTru2.JH478086 135977 3 - 138096 AAA-- i turTru2.JH478086 I 317 N 0 s canFam3.chr25 42495478 2 + 51628933 -AA-- i canFam3.chr25 C 0 I 1 e otoGar3.GL873532 28828371 327 - 32117204 I e ailMel1.GL192536.1 1052258 58 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4141613 284 - 10418462 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=4149.000000 s mm10.chr1_GL456221_random 123301 4 + 206961 -GGAA s rn5.chr9 92370381 4 + 121549591 -GGAA i rn5.chr9 C 0 C 0 s hg19.chr2 231132291 4 + 243199373 -AGAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510015 4 + 247518478 -AGAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464041 4 + 131632457 -AGAG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658011 4 + 6458163 -AGAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060602 4 + 106825570 -AGAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740265 4 + 158406734 -AAAG i calJac3.chr6 C 0 C 0 s canFam3.chr25 42495481 4 + 51628933 CAAA- i canFam3.chr25 I 1 I 5 e otoGar3.GL873532 28828371 327 - 32117204 I e ailMel1.GL192536.1 1052258 58 - 2169676 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4141613 284 - 10418462 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=15368.000000 s mm10.chr1_GL456221_random 123305 12 + 206961 CCAT----TAGTTAAG s rn5.chr9 92370385 12 + 121549591 TCAT----TAGTTAAA i rn5.chr9 C 0 C 0 s hg19.chr2 231132295 14 + 243199373 TCAT--TTTAGGGAAA i hg19.chr2 C 0 I 1 s panTro4.chr2B 235510019 14 + 247518478 TCAT--TTTAGGGAAA i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119464045 14 + 131632457 TCAT--TTTAGGGAAA i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3658015 14 + 6458163 TCAT--TTTAGGGAAA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94060606 14 + 106825570 TCAT--TTTAGCGAAA i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146740269 15 + 158406734 TCGTC-TTCAGTGAAA i calJac3.chr6 C 0 I 1 s canFam3.chr25 42495490 12 + 51628933 ----TTTTTTGTGAAA i canFam3.chr25 I 5 C 0 s ailMel1.GL192536.1 1052316 12 - 2169676 ----TCTTTGGTGAAA i ailMel1.GL192536.1 I 58 C 0 e otoGar3.GL873532 28828371 327 - 32117204 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4141613 284 - 10418462 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=25216.000000 s mm10.chr1_GL456221_random 123317 9 + 206961 TCCTGCTGA s rn5.chr9 92370397 9 + 121549591 CCCTGCCGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141897 9 - 10418462 TCTTGCCAT i speTri2.JH393335 I 284 C 0 s hg19.chr2 231132310 9 + 243199373 TTTTGCCAG i hg19.chr2 I 1 C 0 s panTro4.chr2B 235510034 9 + 247518478 TTTTGCCAG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119464060 9 + 131632457 TTTTGCCAG i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3658030 9 + 6458163 TTTTGCCAG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94060621 9 + 106825570 TGTTGCTAG i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146740285 9 + 158406734 TTTTGACAG i calJac3.chr6 I 1 C 0 s canFam3.chr25 42495502 9 + 51628933 TTTTGCCAC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052328 9 - 2169676 TTTTGCCAT i ailMel1.GL192536.1 C 0 C 0 e otoGar3.GL873532 28828371 327 - 32117204 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=269060.000000 s mm10.chr1_GL456221_random 123326 100 + 206961 TTAT-----TAAGTACAAAACGCATAG----TGGTTGTGAG-AACACAAGGAGGAGCC-CGGGTTCTGCCGTGGGAGAC---TGGCTTTGAAACAG-CAACCCCGTGATGAATGG- s rn5.chr9 92370406 104 + 121549591 TTAT-----TAGGTGCAAGACTCAGAAGTTCTGACTGTAAG-AGCACAAGGAGGAACTGCAAGTTCTGTTATGAGAGAC---TG-CTTTGAGAAAG-CAATCCCATGACAAGTGG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4141906 108 - 10418462 TTATTCAGATGGGTGCAAGAGTTAGAA----TCATAGGGAGTCTCTAAAGGAGGGG---CAGGTTTTGTCAGGGAGTACTTGTGGCTTTAAGGAAGACAGTCATGTGACAAACAG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132319 108 + 243199373 TTATTAAGAAAAGTACAAGAGTTAGAA----TCATGATGAA-AGTATACAGAGGAAGTGAACATTTTGTC--GGGGAGATTATGGCTTTGGCAAAGACAATCCCGTGACAAACAG- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510043 108 + 247518478 TTATTAAGAAAAGTACAAGAGTTAGAA----TCATGATGAA-AGTATACAGAGGAAGTGAACATTTTATC--GGGGAGATTATGGCTTTGGCAAAGACAATCCCGTGACAAACAG- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464069 108 + 131632457 TTATTAAGAAAAGTACAAGAGTTAGAA----TCATGATGAA-AGTATACAGAGGAAGTGAACATTTTGTC--GGGGAGATTATGGCTTTGGCAAAAACAATCCCGTGACAAACAG- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658039 110 + 6458163 TTATTAAGAAAAGTACAAGAGTTAGAA----TCATGATGAA-AGTATACAGAGGAAGTGAACATTTTGTCAGGGGGAGATTATGGCTTTGGCAAAGACAATCCCGTGACAAACAG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060630 105 + 106825570 TTATT-----AAGTACAAGAGTTAGAA----TCATGATGAA-AGTATACAGAGGAAGTGAAACTTTTGTCAGGGGGAGATTATGGCTTTGGCAAAGACAATCCCATGGCAAACAG- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740294 108 + 158406734 TTGTGAAGAAAAGTGTAGGAGTTAGAA----TCGTGGTGAA-AGTATACAGAGGAAGTGAAAGTTTTGTC--GGGGGGAATATGGCTTTGGCAAAGACAATCCCATGACAAACAG- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28828698 105 - 32117204 TTATT-----AAGTGCAAGAGTCAGAA----TCATAATGAG-AGTACGCAGAGGAAGTGAGAGTTTTGTCAGGATGAGGTGGTGGCTTTAGCAAAGACAATCTCATGACAAAAAC- i otoGar3.GL873532 I 327 I 2 s canFam3.chr25 42495511 104 + 51628933 TTATTAAGATAAGTGCA------AGAA----TCATTCTGAG-AGTACAAAGAGGAAGC-TGAGTCCTGTCAGTGGGAGACTGTAGCTTTGGCCAAGATATGTGCATGACAAATAGG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052337 102 - 2169676 TTATTAAGATTAGTGCA------AGAA----TGATTCTGAG-AGTACAAAGAGGAAGT-GGAGCTCTGTCAGTGAGAGACTGTAGCTTTGGCCAAGACA--CCCACGACAACTAGC i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212424913 2511 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=-11552.000000 s mm10.chr1_GL456221_random 123426 1 + 206961 -A s rn5.chr9 92370510 1 + 121549591 -A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142014 1 - 10418462 -C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132427 1 + 243199373 -C i hg19.chr2 C 0 I 1 s panTro4.chr2B 235510151 1 + 247518478 -C i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119464177 1 + 131632457 -C i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3658149 1 + 6458163 -C i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94060735 1 + 106825570 -C i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146740402 1 + 158406734 -C i calJac3.chr6 C 0 I 1 s felCat5.chrC1 212427424 1 + 221441202 A- i felCat5.chrC1 I 2511 C 0 s canFam3.chr25 42495615 1 + 51628933 A- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052439 1 - 2169676 A- i ailMel1.GL192536.1 C 0 C 0 e otoGar3.GL873532 28828803 2 - 32117204 I e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17866154 220 + 84719076 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=-9301.000000 s mm10.chr1_GL456221_random 123427 2 + 206961 AG- s rn5.chr9 92370511 2 + 121549591 GG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142015 2 - 10418462 GA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132429 1 + 243199373 -A- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235510153 1 + 247518478 -A- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119464179 1 + 131632457 -A- i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3658151 1 + 6458163 -A- i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94060737 1 + 106825570 -A- i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146740404 1 + 158406734 -A- i calJac3.chr6 I 1 C 0 s otoGar3.GL873532 28828805 1 - 32117204 -A- i otoGar3.GL873532 I 2 C 0 s felCat5.chrC1 212427425 2 + 221441202 -AC i felCat5.chrC1 C 0 I 642 s canFam3.chr25 42495616 2 + 51628933 -AC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052440 2 - 2169676 -AT i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 4924862 60 - 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17866154 220 + 84719076 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=3922.000000 s mm10.chr1_GL456221_random 123429 4 + 206961 AAGG- s rn5.chr9 92370513 4 + 121549591 AAGG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142017 4 - 10418462 TGAG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132430 4 + 243199373 AGAG- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510154 4 + 247518478 AGAG- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464180 4 + 131632457 AGAG- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658152 4 + 6458163 AGAG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060738 4 + 106825570 AGAG- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740405 4 + 158406734 AGAG- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28828806 4 - 32117204 AAAG- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42495618 4 + 51628933 -AAGG i canFam3.chr25 C 0 I 5 s ailMel1.GL192536.1 1052442 4 - 2169676 -GAGG i ailMel1.GL192536.1 C 0 I 5 s myoLuc2.GL429770 26043950 4 + 30916457 -GAGG i myoLuc2.GL429770 I 719 I 578 e pteVam1.scaffold_9232 28084 9468 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212427427 642 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=549485.000000 s mm10.chr1_GL456221_random 123433 215 + 206961 A----TGTGT--GGTTCTCAGTGTGAACAGTGTGTTG-CCATGGGTGGACTACCAGGCTCTCAAGAG----AAGCACGGGCTAAAAGGGGGACAT-----CAATGACCTGATAGTAGTTGACTCAAGCTTACATCCACAGTGAGAAAAATGA-CTTAT-TCTCA--GACTGGCAAGCCATCATG-TGCCTTTGTGAACGTT------------CCATGGTAGAGTAGGACCAAGGTTCTTTGTAC--TTT s rn5.chr9 92370517 222 + 121549591 A----TGCGT--GGTTATGAGTATGACCAGTGTGTTG-CCATGTGTGGACTACTAGGCTCTCAAGAG----AAGCAGAGGCTAAAAGGAAGACATGTAGTCAATGACCTGACAGTAGTTGACTCAAGATTACATACACAGTGAGAAAAATGA-CTTAC-TCTCACAGACTGGCAAGTCACCACG-TATCTTTGTGAATGGT------------CAATGAGAGAGTAGAACCAAACTTCTTTACAG--TTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142021 234 - 10418462 GCCATTGCATTCAGCAATGAATGTGAATGGTGTGGGGCCCAGGCATGGAACACTGGGATCAC----T----AACCAGAGACTCAAAAGGAGACACATGACCAATGACACGAGAATAACTTAATCCAGCTTGCATACC-----ACATAAATGA-TTTGTGGTTCA--AACTGACAAGACACCAAGTTGCCCTCTTGAAGGTTGTGATGAGGAACCCAAGACAAAGTGTGACCAAACATCTTTGCACAATTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132434 219 + 243199373 GCCACTATATTTCAGTATAAGTGTGAATGGTGTGTTCCACATGAATG------------------------AAGCAGAAACTGAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACT----AAACAAAATGA-TTTTC-TTTCACAAATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACCCAAGAAAAAATGTGACCGAACATCTTTGCACAGTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510158 219 + 247518478 GCCACTATATTTCAGTATAAGTGTGAATGGTGTGTTCCACATGAATG------------------------AAGCAGAAACTGAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACT----AAACAAAATGA-TTTTC-TTTCACAAATTGGCAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACCCAAGATAAAATGTGACCAAACATCTTTGCACAGTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464184 219 + 131632457 GCCACTATATTTCAGTATAAGTGTGAATGGTGTGTTCCACATGAATG------------------------AAGCAGAAACTGAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACT----AAACAAAATGA-TTTTC-TTTCACAGATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACCCAAGATAAAATGTGACCAAACATCTTTGCACAGTTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658156 216 + 6458163 GCCACTATATTTCAGTATAAGTGTGAATGGTGTGTTCCACATGAATG------------------------AAGCAGAAAC-AAAAAGGGGACATATGATTAATTACATGATTGTAGTTGACTCCAGATTACATACT----AAACAAAATGA-TTTTC-TTTCACAAATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACCCAAGATAAAATGTGACCAAACATCTTTG--CAGTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060742 219 + 106825570 ACCGCTATGTTTCAGTACAAGTGTGAATGGTGTGTTCCACATGAATG------------------------AAGCAGTAACTGAAAAGGGAACATACGATTAATTACATGATTGTAGTTGACTCCAGATTGCATACT----AAACAAAATGA-TTTTC-TTTCACAAATTGACAAGACACTAGG-TGCCCTCATGAAGGTTTTGATGAGGGACTCAAGATAAAGTGTGGCCAAACATCTTTGCACAGTTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740409 219 + 158406734 GCCACTATA-TTCGGTTTAAGTGTGAATGGTGGGTTGCACATGAATG------------------------AAGCAGAGACTGAAAAGGGGACATACGATTAATTACATGATTGTAGTTGACTCCAGATTATATACT----AAACAAAATGACTTTTT-TCCCACAAATTGCTAAGACACTAGG-TGTCCTCATGAAGGTTTTGATGAGGGACCCAAGATCAAGTGGGACCAAACATCTTTGAACAGTTT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28828810 241 - 32117204 GCTGCTACATTTAGCTGTAAGTATGAATAGTTTGCTGCATATAAATGGAATATTGAGGTCACCAACCAACCAAGCAGGGACTAAAAAGGGGACACAC-CTCAACTATAGGATAGTAGGTGACTCCTGATTACACACT----AAACAAAATGA-TTTTC-TTTCACAAATCGACAAGCTACCAAG-TGTCCTGATGAAGGTTTTGGTGAGGGACCCAAGACCAGGTACAACCAAACGG-TGTGCACAATTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42495627 213 + 51628933 ------ACATGCAGTCCTTAGTGTGAATGGTGTCCTGCAAGTGAATGGAGTATTGGGTTCCTCCATG----GAGTAGAGACTACAATGGGAACATATGATTGATTACATGATAATAGTTGACCTCAGATTTTGTGAT----AAAC-AAATGA-TTTTC-TCTCAAAAATTGACAAG--------------------AGGGTTTGAGAAGGGACTTAAGACCAAGGGTGACCAAATATCTTTGCACAAATT i canFam3.chr25 I 5 C 0 s ailMel1.GL192536.1 1052451 160 - 2169676 ------ACATGCAGTCCTAAG--------------------------------TGGGTTCATCCACT----GAGCAGAGACTACAATGGGAACATATGATTGATTACATGATAGTAGTTGACCTCAGATTATGTGCC----------------------------AAATTGACAAG--------------------AGGTTTTGGGGAGGGACTCAAGACCAAGGGTGACCAAATATCTTTGCACAAATT i ailMel1.GL192536.1 I 5 C 0 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17866154 220 + 84719076 I e felCat5.chrC1 212427427 642 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=390742.000000 s mm10.chr1_GL456221_random 123648 112 + 206961 GGCTTCTGTCTGGTGGGTGGGTCCACATTCATTAATTTGT----GAGCCTGGTTTGGCTTGGGAACTTGTCAGACCTTCACGTCCATCTGTCTG---TTTTG--TTCCGTTATTTTCTGCT s rn5.chr9 92370739 108 + 121549591 GGCTCCCAACTGGTGGAT----CCACATTTATTAGTTTAT----GAGGCTGGCTTGGCTTGGGAACTTGTCGGACCTTCCCGTCCATCTGTCTG---TTTTG--TGTTGTTATCTTCCAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142255 109 - 10418462 GGCCACTGTCT-ATGAAC----CCACATCCATCAGTTTGG----GGGGCTGGCTTGGATTAAGGACTTATTAGACCTTTGCCTCCATATATGTG---CTTTGGATCATGTtcttttctttt i speTri2.JH393335 C 0 I 125 s hg19.chr2 231132653 108 + 243199373 GGCTACTGTCTAATGGAC----CCACATCCATTAGTTTTA----GGGGCTGGCTTGAATTGAGGACTTATCAGACCTTGACCACCAGCTGTTTG---CTTTG--GATCACTGTCTTCTAAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510377 108 + 247518478 GGCTACTGTCTAATGGAC----CCACATCCATTAGTTTTA----GGGGCTGGCTTGAATTGAGGACTTATCAGACTTTGGCCACCAGCTGTTTG---CTTTG--GATCACTATCTTCTAAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464403 108 + 131632457 GGCTACTGTCTAATGGAC----CCACATCCATTAGTTTTA----GGGGCTGGCTTGAATTGAGGACTTATCAGACCTTGGCCACCAGCTGTTTG---CTTTG--GATCACTATCTTCTAAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658372 93 + 6458163 GG---------------C----CCACAACCATTAGTTTTA----GGGGCTGGCTTGAATTGAGGACTTATCAGACCTTGGCCATCAGCTGTTTG---CTTTG--GATCACTATCTTCTAAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94060961 108 + 106825570 GGCTACTGTCCAATGGAC----CCACATCCATTAGTTTTG----GGGGCTGGCTTGAATTGAGGACTTAGCAGACCTTGGCCACCATCTGTTTG---CTTTG--GATCACTATCTTCTAAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740628 107 + 158406734 GGCTACTGTCTAATGGAC----CCACATCCATTAGTTTTG----GGGGCTGACTTGGATTGAGGACTTATCAGACTGTGGCCACC-GCTGCTTG---CTTTG--GATCACTGTCTTCTAAC i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829051 111 - 32117204 CATTACTGTCTGATGGGC----TCTTATGCAATAGTTTTT----GGGGCTGGCTTGGCTTGAAGATTTATCAGACCTGGGCTGCTATCTATGTGGATCTTTA--GATCACTGTATTCTAAC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42495840 100 + 51628933 AGCTACTGCCCAACGGGT----CCACTTCCATTAATTAGT------------TTTGTATAGAGGACTTATCAGGTCTCTGCCTCCATCTATATG---CTTTG--GATTACTTTCTTCTAAC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052611 100 - 2169676 AACTACTGTCTGATGTAC----CCACATCCATTAGTTAGT------------TTTGCATAGGGGACTTACCAGGTCTATGCCTCCATCTATTTG---CTTTG--GATAACTTTCTTCTAAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866374 112 + 84719076 GGCTCCTGTTTAATGGAT----CCTCCTCCGTGAAATAGTCTTTAGGGCTGGCTTGGATAGGGGACTTATGAGGTCTATGCCTCTATCTATTTG---CTTTG--GATCACTTTCTTATAAC i equCab2.chr6 I 220 C 0 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=133808.000000 s mm10.chr1_GL456221_random 123760 24 + 206961 ATTCAGAAAG-ATGGGCGAATCAGG s rn5.chr9 92370847 24 + 121549591 ATTCAGAGAG-ATGGGAGAATCAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142489 25 - 10418462 ATTCAGAAAGCACAGGAAAATCAGA i speTri2.JH393335 I 125 C 0 s hg19.chr2 231132761 25 + 243199373 ATTCAGAAAGCACAGGAAAATCAGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510485 25 + 247518478 ATTCAGAAAGCACAGGAAAATCAGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464511 25 + 131632457 ATTCAGAAAGCACAGGAAAATCAGG i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658465 25 + 6458163 ATTCAGAAAGCACAGGAAAATCAGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061069 25 + 106825570 ATTCAGAAAGCACAGGAAAATCAGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740735 25 + 158406734 ATTCAGAAAGCATAGGAAAATCAGA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829162 25 - 32117204 ATTCAGAAAGTGCAGGGAAATCAGG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42495940 25 + 51628933 ATTCAAGAAGCACAAGAAAATAAGG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052711 25 - 2169676 ATTCAAGAAGCACAAGAAAATCAGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866486 25 + 84719076 TTTCAAGAAACACAGGAAAGTCAGG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=23755.000000 s mm10.chr1_GL456221_random 123784 4 + 206961 GGCA s rn5.chr9 92370871 4 + 121549591 CGCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142514 4 - 10418462 AACA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132786 4 + 243199373 AACA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235510510 4 + 247518478 AACA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119464536 4 + 131632457 AACA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3658490 4 + 6458163 AACA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061094 4 + 106825570 AACA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146740760 4 + 158406734 AACA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829187 4 - 32117204 GACA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42495965 4 + 51628933 AGCA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052736 4 - 2169676 AGCA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866511 4 + 84719076 AACA i equCab2.chr6 C 0 C 0 s choHof1.scaffold_14362 4035 4 + 23990 AACA i choHof1.scaffold_14362 N 0 I 211 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=4232.000000 s mm10.chr1_GL456221_random 123788 6 + 206961 GAC---ACA------ s rn5.chr9 92370875 6 + 121549591 GAC---ACA------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142518 9 - 10418462 GACAATACA------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132790 6 + 243199373 AGC---ACA------ i hg19.chr2 C 0 I 128 s panTro4.chr2B 235510514 6 + 247518478 AGC---ACA------ i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119464540 6 + 131632457 AGC---ACA------ i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3658494 6 + 6458163 AAC---ACA------ i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94061098 6 + 106825570 AAC---ACA------ i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146740764 6 + 158406734 AAC---ATG------ i calJac3.chr6 C 0 I 2 s otoGar3.GL873532 28829191 6 - 32117204 AAT---ACA------ i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42495969 12 + 51628933 AAC---AAACACACA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052740 12 - 2169676 AAC---AAACACACA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866515 12 + 84719076 AAC---AAACACACG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e choHof1.scaffold_14362 4039 211 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=39741.000000 s mm10.chr1_GL456221_random 123794 16 + 206961 AGG-----AAAAACACTTTTT s rn5.chr9 92370881 16 + 121549591 AGG-----AAAAACACCTTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142527 18 - 10418462 AGACTTTTAAAAACA---GAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132924 16 + 243199373 AGA-----GATAAGACTTTTT i hg19.chr2 I 128 C 0 s panTro4.chr2B 235510522 16 + 247518478 TGA-----AATAAGACTTttt i panTro4.chr2B I 2 I 508 s gorGor3.chr2B 119464548 16 + 131632457 TGA-----AATAAGACTTTTT i gorGor3.chr2B I 2 I 523 s nomLeu2.GL397366 3658502 16 + 6458163 TGA-----AATAAGACttttt i nomLeu2.GL397366 I 2 I 498 s rheMac3.chr12 94061106 16 + 106825570 TGA-----AATAAGACTTttt i rheMac3.chr12 I 2 I 491 s calJac3.chr6 146740772 16 + 158406734 TGA-----TATAAGACTTTtt i calJac3.chr6 I 2 I 127 s otoGar3.GL873532 28829199 16 - 32117204 TGA-----GACAGGATTTTTT i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42495981 15 + 51628933 TAA-----GACAAGACTTT-G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052752 16 - 2169676 TAA-----GACAAAACTTTGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866527 16 + 84719076 TGA-----GACAAGACTTTTT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e choHof1.scaffold_14362 4039 211 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=2440.000000 s mm10.chr1_GL456221_random 123810 19 + 206961 AAAAGTT-----------CCCGAGACTGAA s rn5.chr9 92370897 19 + 121549591 AAAAGTT-----------TCTGAGACTAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142545 15 - 10418462 AAAAGT---------------GAGAACAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231132940 9 + 243199373 ---------------------AAAAATAGA i hg19.chr2 C 0 I 336 s calJac3.chr6 146740915 19 + 158406734 AAGACTT-----------TTTAAAAATAGA i calJac3.chr6 I 127 C 0 s otoGar3.GL873532 28829215 19 - 32117204 AAAAATG-----------AGCAAAAGAAAA i otoGar3.GL873532 C 0 I 11 s canFam3.chr25 42495996 17 + 51628933 AAAAATG-------------TAAGAGTAAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052768 26 - 2169676 AAAAATAGACCAAAG----TTAAGAGTAAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866543 30 + 84719076 AAAAATAGAAAAAAGAACAGTGAGAGTAAA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94061122 491 + 106825570 I e nomLeu2.GL397366 3658518 498 + 6458163 I e gorGor3.chr2B 119464564 523 + 131632457 I e panTro4.chr2B 235510538 508 + 247518478 I e felCat5.chrC1 212427427 642 + 221441202 I e choHof1.scaffold_14362 4039 211 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=-5620.000000 s mm10.chr1_GL456221_random 123829 10 + 206961 TG---TAGC-A-----A-GA s rn5.chr9 92370916 10 + 121549591 TG---TAGC-A-----A-GC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142560 14 - 10418462 TGATATAGTGG-----A-GA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133285 12 + 243199373 TG---AAAC-A---AGT-AA i hg19.chr2 I 336 C 0 s calJac3.chr6 146740934 12 + 158406734 TG---AAAG-A---AAA-GT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829245 15 - 32117204 TG---AAGT-AGCGGAA-GA i otoGar3.GL873532 I 11 C 0 s canFam3.chr25 42496013 15 + 51628933 TG---AAGC-AGTGGAA-GA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052794 15 - 2169676 TG---AAAC-AGTAGAA-GA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866573 16 + 84719076 TG---AAGT-AGTGAAGTGA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94061122 491 + 106825570 I e nomLeu2.GL397366 3658518 498 + 6458163 I e gorGor3.chr2B 119464564 523 + 131632457 I e panTro4.chr2B 235510538 508 + 247518478 I e felCat5.chrC1 212427427 642 + 221441202 I e choHof1.scaffold_14362 4039 211 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=-1226.000000 s mm10.chr1_GL456221_random 123839 11 + 206961 AT-AAACATAGA-- s rn5.chr9 92370926 11 + 121549591 AT-AAACACAGC-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142574 11 - 10418462 AT-AAGTACATA-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133297 9 + 243199373 AT-AAGTAAA---- i hg19.chr2 C 0 I 14 s calJac3.chr6 146740946 9 + 158406734 AA-CAGTAGA---- i calJac3.chr6 C 0 I 30 s otoGar3.GL873532 28829260 9 - 32117204 AT-AAATACA---- i otoGar3.GL873532 C 0 I 6 s canFam3.chr25 42496028 10 + 51628933 ATAAAAAATA---- i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1052809 9 - 2169676 AT-AAAAATA---- i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17866589 9 + 84719076 AT-AAACACA---- i equCab2.chr6 C 0 I 2 s choHof1.scaffold_14362 4250 11 + 23990 at-aactgaa--ga i choHof1.scaffold_14362 I 211 I 111 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94061122 491 + 106825570 I e nomLeu2.GL397366 3658518 498 + 6458163 I e gorGor3.chr2B 119464564 523 + 131632457 I e panTro4.chr2B 235510538 508 + 247518478 I e felCat5.chrC1 212427427 642 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=227103.000000 s mm10.chr1_GL456221_random 123850 86 + 206961 GAT----AGAATATTTGCTACATACTGTACCTACAAATTAAGATA--GAA-----ATT----TCTCTATGTTGATTTCTA-----C-ATGCATCTTTA---ACTAA-CCTG s rn5.chr9 92370937 86 + 121549591 GGC----AGAATATTTGCTACATGCTGTACCTACAAATTAAGGTA--GAA-----ATT----TCTTTACGTTGCTTTCTA-----C-ATGCATCTTTA---ACTAA-CCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142585 93 - 10418462 AGTGGAGGGAATAATTGCTAGATGCTGTACTTCcaaaccaaaatatctaa-----aca----aaaccaaattaaatcaga-----tgaaacaatttaa---atcag-ataa i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133320 83 + 243199373 ----GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTG----TATCTAA------TTGTA-----T-ACCCATGTTTA---AATAAGATAA i hg19.chr2 I 14 C 0 s panTro4.chr2B 235511046 83 + 247518478 ----GAGAAAATGTTGGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTG----TACCTAA------TTGTA-----T-ACCCATGTTTA---AATAAGATAA i panTro4.chr2B I 508 C 0 s gorGor3.chr2B 119465087 83 + 131632457 ----GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACTGAAAATATCTAA-----TTG----TATCTAA------TTGTG-----T-ACCCATGTTTA---AATAAGATAA i gorGor3.chr2B I 523 C 0 s nomLeu2.GL397366 3659016 83 + 6458163 ----GAGAAAATGTTTGCTAAGTGGTATACTTCCAACTGAAAATATCTAA-----TTC----TATCTAA------TTGTA-----T-ACCCATCTTTA---AATAAGATAA i nomLeu2.GL397366 I 498 C 0 s rheMac3.chr12 94061613 88 + 106825570 ----GAGAAAATGTTTGCTAAGTGGTGTACTTCCAACCCAAAATATCTAA-----TTC----TATCTAA------TTGTATGCCCT-GCCCATCTTTA---AATAAGATAA i rheMac3.chr12 I 491 C 0 s calJac3.chr6 146740985 83 + 158406734 ----GAGAAAGCGTTTGCTAAGTGCTGGACTTCCAACCCCAAATATCTAA-----TTC----TATCTAA------TTGTA-----T-ACCCATCTTTA---AATAAGATCA i calJac3.chr6 I 30 C 0 s otoGar3.GL873532 28829275 88 - 32117204 ----GAGAGAGCATATGCTGAGTGCTTCGCCTCCAGACCACAGTAGCTAA-----TTCTTTATATCTGA-----TTTGCA-----T-ATCCACCTTTA---AATAAGATAT i otoGar3.GL873532 I 6 C 0 s canFam3.chr25 42496040 91 + 51628933 ----AACAGAATATTTGCTAAATGCTGTACCTCCAAACCAAGATGTCTGACTACTTTG----TATCTAA------TTGCA-----T-ATACATCTTTTATAAATAAGATTA i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1052820 91 - 2169676 ----TACAGAATATTTGCTAAATGCTGCACTTCCAAACCAAGATGTCTAACTACTTTG----TGTCTAA------TTGCA-----T-ATACATCTTTAAGTATCAAGATTA i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17866600 91 + 84719076 ----AACAGAGTATTTGCTAAATGCTGCACCTCCAAACGAAAATGTCTAACTATTTTG----TATCTAA------TTGTA-----T-ATGCATCTTTAGATAGTAAGATGA i equCab2.chr6 I 2 C 0 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e choHof1.scaffold_14362 4261 111 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=12563.000000 s mm10.chr1_GL456221_random 123936 2 + 206961 AC s rn5.chr9 92371023 2 + 121549591 AC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142678 2 - 10418462 at i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133403 2 + 243199373 AT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511129 2 + 247518478 AT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465170 2 + 131632457 AT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659099 2 + 6458163 AT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061701 2 + 106825570 AT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741068 2 + 158406734 AT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829363 2 - 32117204 AT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496131 2 + 51628933 AC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052911 2 - 2169676 AT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866691 2 + 84719076 AT i equCab2.chr6 C 0 C 0 s choHof1.scaffold_14362 4372 2 + 23990 AT i choHof1.scaffold_14362 I 111 I 36 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=96549.000000 s mm10.chr1_GL456221_random 123938 23 + 206961 TCAGAAATAAAAGCACAATGAA------------A s rn5.chr9 92371025 23 + 121549591 TCAGAAATAAAAGCACAGTGAG------------T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142680 35 - 10418462 tcagaAATAAAAGCCCAGGGAAACAATCCAGAGCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133405 23 + 243199373 TCAGAACTAGGAGCTCAGTGAA------------A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511131 23 + 247518478 TCAGAACTAGGAGCTCAGTGAA------------A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465172 23 + 131632457 TCAGAACTAGGAGCTCAGTGAA------------A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659101 23 + 6458163 TCAGAACTAGGAGCTCAGTGAA------------A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061703 23 + 106825570 TCAGAACTAAGAGTTCAATGAA------------A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741070 23 + 158406734 TCAGAACTAAGAGCTCAACGAA------------A i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829365 23 - 32117204 TCAGCAATAAGAAGTCAAATAA------------A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496133 23 + 51628933 TCATAAATAGGAACTCAATTAC------------A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052913 23 - 2169676 TCAGAAATAAGAACTCAATAAA------------A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866693 23 + 84719076 TCAGAAGTAAGAGCTCAGTGAA------------A i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 28084 9468 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e choHof1.scaffold_14362 4374 36 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=17381.000000 s mm10.chr1_GL456221_random 123961 2 + 206961 CA s rn5.chr9 92371048 2 + 121549591 CA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142715 2 - 10418462 CA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133428 2 + 243199373 CA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511154 2 + 247518478 CA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465195 2 + 131632457 CA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659124 2 + 6458163 CA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061726 2 + 106825570 CA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741093 2 + 158406734 CA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829388 2 - 32117204 CA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496156 2 + 51628933 CA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052936 2 - 2169676 CA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866716 2 + 84719076 CA i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_9232 37552 2 + 60856 CA i pteVam1.scaffold_9232 I 9468 I 111 e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e choHof1.scaffold_14362 4374 36 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 112362 994 + 176633 I a score=18512.000000 s mm10.chr1_GL456221_random 123963 3 + 206961 AGT s rn5.chr9 92371050 3 + 121549591 AGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142717 3 - 10418462 AGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133430 3 + 243199373 AGT i hg19.chr2 C 0 I 12 s panTro4.chr2B 235511156 3 + 247518478 AGT i panTro4.chr2B C 0 I 12 s gorGor3.chr2B 119465197 3 + 131632457 AGT i gorGor3.chr2B C 0 I 12 s nomLeu2.GL397366 3659126 3 + 6458163 AGT i nomLeu2.GL397366 C 0 I 12 s rheMac3.chr12 94061728 3 + 106825570 AGT i rheMac3.chr12 C 0 I 14 s calJac3.chr6 146741095 3 + 158406734 AGT i calJac3.chr6 C 0 I 12 s micMur1.scaffold_3075 113356 3 + 176633 AGT i micMur1.scaffold_3075 I 994 I 121 s otoGar3.GL873532 28829390 3 - 32117204 AGT i otoGar3.GL873532 C 0 I 12 s canFam3.chr25 42496158 3 + 51628933 AGC i canFam3.chr25 C 0 I 6 s ailMel1.GL192536.1 1052938 3 - 2169676 TTT i ailMel1.GL192536.1 C 0 I 6 s equCab2.chr6 17866718 3 + 84719076 AGT i equCab2.chr6 C 0 I 6 e pteVam1.scaffold_9232 37554 111 + 60856 I e myoLuc2.GL429770 26043954 578 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e choHof1.scaffold_14362 4374 36 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=-3963.000000 s mm10.chr1_GL456221_random 123966 4 + 206961 TCCA s rn5.chr9 92371053 4 + 121549591 TCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142720 4 - 10418462 TGTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133445 4 + 243199373 TGTT i hg19.chr2 I 12 C 0 s panTro4.chr2B 235511171 4 + 247518478 TGTT i panTro4.chr2B I 12 C 0 s gorGor3.chr2B 119465212 4 + 131632457 TGTT i gorGor3.chr2B I 12 C 0 s nomLeu2.GL397366 3659141 4 + 6458163 TGTT i nomLeu2.GL397366 I 12 C 0 s rheMac3.chr12 94061745 4 + 106825570 TGTT i rheMac3.chr12 I 14 C 0 s calJac3.chr6 146741110 4 + 158406734 TGTT i calJac3.chr6 I 12 C 0 s otoGar3.GL873532 28829405 3 - 32117204 TGT- i otoGar3.GL873532 I 12 C 0 s canFam3.chr25 42496167 4 + 51628933 TCAA i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1052947 4 - 2169676 TCAA i ailMel1.GL192536.1 I 6 C 0 s equCab2.chr6 17866727 4 + 84719076 TCAA i equCab2.chr6 I 6 C 0 s myoLuc2.GL429770 26044532 1 + 30916457 ---A i myoLuc2.GL429770 I 578 C 0 e pteVam1.scaffold_9232 37554 111 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e choHof1.scaffold_14362 4374 36 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113359 121 + 176633 I a score=3701.000000 s mm10.chr1_GL456221_random 123970 1 + 206961 G s rn5.chr9 92371057 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142724 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133449 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511175 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465216 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659145 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061749 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741114 1 + 158406734 G i calJac3.chr6 C 0 C 0 s canFam3.chr25 42496171 1 + 51628933 C i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1052951 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866731 1 + 84719076 G i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26044533 1 + 30916457 G i myoLuc2.GL429770 C 0 C 0 s choHof1.scaffold_14362 4410 1 + 23990 G i choHof1.scaffold_14362 I 36 I 126 e otoGar3.GL873532 28829408 0 - 32117204 C e pteVam1.scaffold_9232 37554 111 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113359 121 + 176633 I a score=4423.000000 s mm10.chr1_GL456221_random 123971 1 + 206961 T s rn5.chr9 92371058 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142725 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133450 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511176 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465217 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659146 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061750 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741115 1 + 158406734 T i calJac3.chr6 C 0 C 0 s canFam3.chr25 42496172 1 + 51628933 T i canFam3.chr25 C 0 I 6 s ailMel1.GL192536.1 1052952 1 - 2169676 T i ailMel1.GL192536.1 C 0 I 6 s equCab2.chr6 17866732 1 + 84719076 T i equCab2.chr6 C 0 I 6 s myoLuc2.GL429770 26044534 1 + 30916457 T i myoLuc2.GL429770 C 0 I 78 e otoGar3.GL873532 28829408 0 - 32117204 C e pteVam1.scaffold_9232 37554 111 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e choHof1.scaffold_14362 4411 126 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113359 121 + 176633 I a score=272920.000000 s mm10.chr1_GL456221_random 123972 87 + 206961 TGAGACTGAGTCACTTGGTGTGGTGGTTCAGGAACACTATCTGAA------TTGTGCACAAGCAGTCTGGAATTTGCA-TCTGT-----------------AGGACA----C-----TCC s rn5.chr9 92371059 88 + 121549591 TGCGACTGAGTCACTTGGC---GTGGTTCAGAATCATTATCTGAG------TCGTACACAAGAGGTTTAGATTTTACT-TCTGC-----------------AGGACACTCCC-----TCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142726 95 - 10418462 TAATGCTGATTCATTTGGC--AGTGGGCCAGGAAGACCA-CTGAGCTAGGCCCAGGCCCAAGAGGTATGGAATTGACC-CCCGT-----------------GAGGTG----CAAGGGTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133451 101 + 243199373 TGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAG------CTGGACAC-AGTGGCCTGAGATTCATG-CCTGTGGTTCCAAGGGTCCCACAGGACA----C-----TCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511177 101 + 247518478 TGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAG------CTGGACAC-AGTGGCCTGAGATTCATG-CTTGTGGATCCAAGGGTCCCACAGGACA----C-----TCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465218 101 + 131632457 TGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGACCTGAG------CTGGACAC-AGTGGCCTGAGATTCATG-CTTGTGGATCCAAGGGTCCCACAGGACA----C-----TCC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659147 101 + 6458163 TGAGAAAGTTTCACTTGGC--AGTAGGTCAGAAAAATGACCTCAG------CTGAACAC-AGTGGCCTGAGATTCATG-CTTGTGGATCCAAGGCCCCCACAGGACA----C-----TCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061751 101 + 106825570 TGAGAAAGATTCACTTGGC--AGTAGGTCAGAAAAATGGCCTGAG------ATGGACAC-AGTGGCCTGAGATTCATG-CTTGTGGATCCAAGGGCCCCACAGGACA----C-----TCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741116 102 + 158406734 TGAGAAAGATTCACTTGGC--AATAGGTCAGAAAAGTGACCTGAA------CTGGACACAAGTGGCCTGAGATTCATG-CTTGTGGATCCAAGGGGCCCACAGGACA----C-----TCC i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829408 93 - 32117204 TAAGGCAGATTCACTTGGC--TGTGGATCAGGAAGATAATCTGAG------GTGGGCACAAAAGGCCTGGGGTTCCTGCCTTCCTGGTCCAAGGGT----------G----C-----TCC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496179 90 + 51628933 TGAGATGGATT--------------AATCAGAAAGACAATCTGAA------TTGGGCACAAAAGCCTGTGGATTTATA-CCTGTTGGCCCAAGGATTCCACAGGACA----T-----TCC i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1052959 90 - 2169676 TGAGATGGATT--------------GCTCCGGAAGACAATTTGAG------TTGGGCACGAGAGGTGGTGGATTTACA-CCTGTTGGCCCAAGGATCTTACAGGACA----T-----TGC i ailMel1.GL192536.1 I 6 C 0 s equCab2.chr6 17866739 102 + 84719076 TGCGACAGATTCACTTGGC--AGCGGATCAGGGAGACAGTCTGAG------TTGGGCACAAGAGGCCCGTGATTTACA-CCTGTTGGTCCAAGGGTCCTACAGGACA----C-----TCT i equCab2.chr6 I 6 C 0 e pteVam1.scaffold_9232 37554 111 + 60856 I e myoLuc2.GL429770 26044535 78 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212427427 642 + 221441202 I e choHof1.scaffold_14362 4411 126 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113359 121 + 176633 I a score=3860.000000 s mm10.chr1_GL456221_random 124059 1 + 206961 C s rn5.chr9 92371147 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142821 1 - 10418462 C i speTri2.JH393335 C 0 I 14 s hg19.chr2 231133552 1 + 243199373 C i hg19.chr2 C 0 I 1 s panTro4.chr2B 235511278 1 + 247518478 C i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119465319 1 + 131632457 C i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3659248 1 + 6458163 C i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94061852 1 + 106825570 C i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146741218 1 + 158406734 C i calJac3.chr6 C 0 I 1 s otoGar3.GL873532 28829501 1 - 32117204 C i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212428069 1 + 221441202 T i felCat5.chrC1 I 642 C 0 s canFam3.chr25 42496269 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053049 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866841 1 + 84719076 T i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_9232 37665 1 + 60856 T i pteVam1.scaffold_9232 I 111 C 0 e myoLuc2.GL429770 26044535 78 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e choHof1.scaffold_14362 4411 126 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113359 121 + 176633 I a score=7513.000000 s mm10.chr1_GL456221_random 124060 1 + 206961 A s rn5.chr9 92371148 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142836 1 - 10418462 A i speTri2.JH393335 I 14 C 0 s hg19.chr2 231133554 1 + 243199373 A i hg19.chr2 I 1 C 0 s panTro4.chr2B 235511280 1 + 247518478 A i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119465321 1 + 131632457 A i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3659250 1 + 6458163 G i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94061854 1 + 106825570 A i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146741220 1 + 158406734 A i calJac3.chr6 I 1 C 0 s micMur1.scaffold_3075 113480 1 + 176633 A i micMur1.scaffold_3075 I 121 C 0 s otoGar3.GL873532 28829502 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212428070 1 + 221441202 A i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42496270 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053050 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866842 1 + 84719076 A i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_9232 37666 1 + 60856 A i pteVam1.scaffold_9232 C 0 I 245 e myoLuc2.GL429770 26044535 78 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e choHof1.scaffold_14362 4411 126 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=5757.000000 s mm10.chr1_GL456221_random 124061 1 + 206961 G s rn5.chr9 92371149 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142837 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133555 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511281 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465322 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659251 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061855 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741221 1 + 158406734 G i calJac3.chr6 C 0 C 0 s micMur1.scaffold_3075 113481 1 + 176633 G i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28829503 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212428071 1 + 221441202 A i felCat5.chrC1 C 0 I 255 s canFam3.chr25 42496271 1 + 51628933 G i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1053051 1 - 2169676 A i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17866843 1 + 84719076 A i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_9232 37667 245 + 60856 I e myoLuc2.GL429770 26044535 78 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e choHof1.scaffold_14362 4411 126 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=7397.000000 s mm10.chr1_GL456221_random 124062 1 + 206961 C s rn5.chr9 92371150 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142838 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133556 1 + 243199373 C i hg19.chr2 C 0 I 2 s panTro4.chr2B 235511282 1 + 247518478 C i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119465323 1 + 131632457 C i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3659252 1 + 6458163 C i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94061856 1 + 106825570 C i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146741222 1 + 158406734 C i calJac3.chr6 C 0 I 2 s micMur1.scaffold_3075 113482 1 + 176633 C i micMur1.scaffold_3075 C 0 I 237 s otoGar3.GL873532 28829504 1 - 32117204 T i otoGar3.GL873532 C 0 I 3 s canFam3.chr25 42496273 1 + 51628933 C i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1053053 1 - 2169676 C i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17866845 1 + 84719076 C i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_9232 37667 245 + 60856 I e myoLuc2.GL429770 26044535 78 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4411 126 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=25849.000000 s mm10.chr1_GL456221_random 124063 8 + 206961 --AAGCCTT-C s rn5.chr9 92371151 8 + 121549591 --AAGCCTA-C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142839 9 - 10418462 --AAGTCTTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133559 9 + 243199373 --GAATCTTCA i hg19.chr2 I 2 C 0 s panTro4.chr2B 235511285 9 + 247518478 --GAATCTTCA i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119465326 9 + 131632457 --GAACCTTCA i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 3659255 9 + 6458163 --GAATCTTCA i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94061859 9 + 106825570 --GAATCTTCA i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146741225 9 + 158406734 --GAGTCTTCA i calJac3.chr6 I 2 C 0 s otoGar3.GL873532 28829508 9 - 32117204 --AAGTTTTCA i otoGar3.GL873532 I 3 C 0 s canFam3.chr25 42496274 11 + 51628933 AAGGGTCTTTA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053054 11 - 2169676 AAGAGTCTTTA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866846 11 + 84719076 AAGAGTCTTCA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37667 245 + 60856 I e myoLuc2.GL429770 26044535 78 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4411 126 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113483 237 + 176633 I a score=5499.000000 s mm10.chr1_GL456221_random 124071 1 + 206961 A s rn5.chr9 92371159 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142848 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133568 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511294 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465335 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659264 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061868 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741234 1 + 158406734 A i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829517 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496285 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053065 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866857 1 + 84719076 A i equCab2.chr6 C 0 C 0 s choHof1.scaffold_14362 4537 1 + 23990 A i choHof1.scaffold_14362 I 126 I 66 e pteVam1.scaffold_9232 37667 245 + 60856 I e myoLuc2.GL429770 26044535 78 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113483 237 + 176633 I a score=18072.000000 s mm10.chr1_GL456221_random 124072 3 + 206961 GAT s rn5.chr9 92371160 3 + 121549591 GAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142849 3 - 10418462 GAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133569 3 + 243199373 GAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511295 3 + 247518478 GAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465336 3 + 131632457 GAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659265 3 + 6458163 GAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061869 3 + 106825570 GAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741235 3 + 158406734 GAT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829518 3 - 32117204 GGT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496286 3 + 51628933 GAT i canFam3.chr25 C 0 I 232 s ailMel1.GL192536.1 1053066 3 - 2169676 GAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866858 3 + 84719076 GAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37667 245 + 60856 I e myoLuc2.GL429770 26044535 78 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4538 66 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113483 237 + 176633 I a score=13813.000000 s mm10.chr1_GL456221_random 124075 5 + 206961 GATCT s rn5.chr9 92371163 5 + 121549591 GATTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142852 5 - 10418462 GATAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133572 5 + 243199373 AATCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511298 5 + 247518478 AATCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465339 5 + 131632457 AATCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659268 5 + 6458163 AATCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061872 5 + 106825570 TATCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741238 5 + 158406734 AATCT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829521 5 - 32117204 GATAT i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1053069 4 - 2169676 -GGCT i ailMel1.GL192536.1 C 0 I 4 s equCab2.chr6 17866861 5 + 84719076 GATCT i equCab2.chr6 C 0 I 4 e canFam3.chr25 42496289 232 + 51628933 I e pteVam1.scaffold_9232 37667 245 + 60856 I e myoLuc2.GL429770 26044535 78 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4538 66 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113483 237 + 176633 I a score=-1807.000000 s mm10.chr1_GL456221_random 124080 4 + 206961 TATG-- s rn5.chr9 92371168 4 + 121549591 TGTT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142857 4 - 10418462 TGGT-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133577 4 + 243199373 CGGC-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511303 4 + 247518478 CGGC-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465344 4 + 131632457 TGGC-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659273 4 + 6458163 CGGC-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061877 4 + 106825570 CGGC-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741243 4 + 158406734 CAGT-- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829526 4 - 32117204 TGCC-- i otoGar3.GL873532 C 0 C 0 s myoLuc2.GL429770 26044613 3 + 30916457 ---CCA i myoLuc2.GL429770 I 78 N 0 e canFam3.chr25 42496289 232 + 51628933 I e ailMel1.GL192536.1 1053073 4 - 2169676 I e pteVam1.scaffold_9232 37667 245 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17866866 4 + 84719076 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4538 66 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113483 237 + 176633 I a score=49519.000000 s mm10.chr1_GL456221_random 124084 24 + 206961 GATAACAGCATATATGAAAGCTGG s rn5.chr9 92371172 24 + 121549591 GAGAACATCATACATAGAAGCTGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142861 24 - 10418462 GAGGACTCCAAAATTTGAAGGGAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133581 24 + 243199373 AGGAACTCCAATTTTTGAAGGGCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511307 24 + 247518478 AGGAACTCCAATTTTTGAAGGGCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465348 24 + 131632457 AGGAACTCCAATTTTTGAAGGGCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659277 24 + 6458163 AGGAACTCCAATTTTTGAAGGGCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061881 24 + 106825570 AGGAACTCCAATTTTTGAAGGGCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741247 24 + 158406734 AGGAACTCCAGTTTTTGAAGGGCA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829530 21 - 32117204 AGAAACTTTCATTTTTGAAGT--- i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1053077 22 - 2169676 GGGAAATCCAATTTTGGAGGGA-- i ailMel1.GL192536.1 I 4 I 1 s equCab2.chr6 17866870 22 + 84719076 GGGAACTCCATTTTTGAAGGGG-- i equCab2.chr6 I 4 I 1 e canFam3.chr25 42496289 232 + 51628933 I e pteVam1.scaffold_9232 37667 245 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4538 66 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113483 237 + 176633 I a score=86778.000000 s mm10.chr1_GL456221_random 124108 30 + 206961 AGACTATCACTCCCATACCTGA-------AGCTGAAA s rn5.chr9 92371196 30 + 121549591 AGACCATCATTCCCGTATCTGA-------AGCTGCAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142885 34 - 10418462 AACTCATCACT-TAATATCTGAGCTCAGTATCTG--A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133605 29 + 243199373 AGGCTACTACT-CATAATCTGA-------AACTAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511331 29 + 247518478 AGGCTACTACT-CATAATCTGA-------AACTAAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465372 29 + 131632457 AGGCTACTACT-CATAATCTGA-------AACTAAAA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659301 29 + 6458163 AGGCTACTACT-CATATTCTGA-------AACTAAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061905 29 + 106825570 AGGCTAGTACT-CATTAACTGA-------AACTTAAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741271 29 + 158406734 AGGCTACCACT-CTTTATCTGA-------AACTAAAA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829551 28 - 32117204 -GAATACCACT-TTGAATATGA-------AGCCAAAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496521 29 + 51628933 AGACCATCATG-CCATTTCTGA-------AGCTAAAA i canFam3.chr25 I 232 C 0 s ailMel1.GL192536.1 1053100 29 - 2169676 AGACCATCATG-CCATATCTGA-------AGCTAAAA i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17866893 29 + 84719076 AGACCATCATG-CAATATCTGA-------AGCTAAAA i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_9232 37667 245 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4538 66 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113483 237 + 176633 I a score=9264.000000 s mm10.chr1_GL456221_random 124138 3 + 206961 GC------------T s rn5.chr9 92371226 3 + 121549591 GC------------T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142919 3 - 10418462 GA------------T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133634 14 + 243199373 GC-TGATTTATTCCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511360 14 + 247518478 GC-TGATTTATTCCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465401 14 + 131632457 GC-TTATTTATTCCT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659330 14 + 6458163 GC-TGATTTATTCCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061934 14 + 106825570 GC-TGATTTATTCCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741300 14 + 158406734 GC-TGACTTATTCTT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829579 14 - 32117204 GC-TGACTTATTGCT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496550 15 + 51628933 GAGGGATTTATTGCT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053129 15 - 2169676 GAGGGATTTATTGCT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866922 15 + 84719076 GAAGGATTTATTGCT i equCab2.chr6 C 0 C 0 s choHof1.scaffold_14362 4604 3 + 23990 ------------GCT i choHof1.scaffold_14362 I 66 I 397 e pteVam1.scaffold_9232 37667 245 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113483 237 + 176633 I a score=185205.000000 s mm10.chr1_GL456221_random 124141 58 + 206961 TGTTGAGTGAAGGTCCTGGTAGGGGTGGGAGGAG-ACACTGCACTCAAAGCATATGGCT s rn5.chr9 92371229 59 + 121549591 TGCCTAGTGAAGTCCCTGGAGGGTGGGGGAGGGGAACACCATGCTCAAAGCGTGTGGCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142922 52 - 10418462 TGCTAAGCAAAGGTCCCG------TTGGGAGGTG-ACACTGTGCTTATGGGACACAGTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133648 52 + 243199373 AGCTAAGCAAGGCACCTA------GTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511374 52 + 247518478 AGCTAAGCAAGGCACCTA------GTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465415 52 + 131632457 AGCTAAGCAAGGCACCTA------CTGGGAGGAG-GCCCTGTGCTTGTAAGACACAGTC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659344 51 + 6458163 TGCTGAGCAAGGCACCTG------GTGGGAGGAG-G-CCTGTGCTTATAAGACACAGTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94061948 52 + 106825570 TGCCAAGCAAGGCATCTG------GTGGGAGGAG-GCCCTGTGCTTATAAGACACAGTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741314 51 + 158406734 TGCTAAGCAAGGCA-CTG------GGGGGAGGAG-GTCCTGTGCTTGTAAGACACAGTC i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829593 51 - 32117204 TGCTAAGCAAGTCACTTG------GTAGGAGGAG-G-CATGTGCTCATAGGACACAATT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496565 52 + 51628933 TGCTAAGCTAAGTGCATG------GTGGGAGGAG-GTACAGTACTTATAGGACATAGTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053144 52 - 2169676 TGCTAAGCAAGGTGCATG------GTGGAAGGAG-GTATGGTACTCATAGGACATAGTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866937 50 + 84719076 TGCTAAGCAAGGCACATG------GTGGGAGGAG-G--CAATACTTATAGGACACAGTT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37667 245 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113483 237 + 176633 I a score=358968.000000 s mm10.chr1_GL456221_random 124199 99 + 206961 TCTACAGAAAAGGCCAC---AGTTGG---TTGTGCCTAGAACTTTGAGAAGCAGGTAGTT------CAGGGTCTG--TAGACTTTGCAAAGCA-GAAGTGGTTATGCACAGGCT s rn5.chr9 92371288 92 + 121549591 TCTACAGAAAAGGCCAC---AGTTGG---TTGTGCTTGG----TTAAGAAACAGGTAGTT------CAGGGTCTG--C---TTTTGCAAAGCA-GAAGTGGTTATGCCCAGGCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4142974 98 - 10418462 TCTATGAAACAGGAAAC---TGCTGA---TTTTTTATCAAGTTTTGGAAAATAAGGATTT------CGGGACCCAACC---CTTCTAGAAGCA-GGAGTGTTTATTTGTATGTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133700 98 + 243199373 TCTATAGAAAAGGAAAC---TGCAG----TTTTATAGAGAGTTTTAGGAAGCATATTGTG------TAGGGACTC--CAGACCTTCAGAAACA-GGAGTGTTTATGAGTAATTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511426 98 + 247518478 TCTATAGAAAAGGAAAC---TGCAG----TTTTATATAGAGTTTTAGGAAGCATATTGTG------TAGGGACTC--CAGACCTTCAGAAACA-GGAGTGTTTATGAGTAATTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465467 98 + 131632457 TCTACAGAAAAGGAAAC---TGCAG----TTTTACATAGAGTTTTAGGAAGCATATTGTG------TAGGGACTC--CAGACCTTCAGAAACA-GGAGTGTTTATGAGTAATTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122691981 95 + 135000294 TCTACAAATAAGGAAAC---TGCTGA---TTTTATATAGAGTTTTAGGAAACATA--GTT------CAGGCACTA--CAGACTTTCAGAAACA-GGAGTG--TATGAATAGTTT i ponAbe2.chr2b N 0 C 0 s nomLeu2.GL397366 3659395 104 + 6458163 TCTATAGAAAAGGAAAC---TGCAG----TTTTATATAGAGTTTTAGGAAGCATATTGTGGGACTCCACGGACTC--CAAACCTTCAGAAACA-GGAGTGTTTATGAGTAATTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062000 98 + 106825570 TTTATAGAAATGGAAAC---TGCAT----TTTTATATAGAGTTTTAGGAAGCATATTGTT------TAGGGACCC--CAGACCTTCAGAAACA-GGAGTGTTTATGAGTAATTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741365 102 + 158406734 TCTATAGAAAAGGAAAC---TGTGGGGTTTTTTTTATAGAGTTTTTGGAAACATATTGTT------CAGGGACTC--CAGACCTTCAGAAACA-GGAGTGTTTATGAATAATTT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829644 96 - 32117204 TCTACGAAAAAGGAAAC---TGCTGA---TTTTAGATAG---CTTGGGAAGCATGTAGTT------CAGGGACTA--CAAACTTTCAGAAGTA-GGATTGTTTGGGAATAGGTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496617 97 + 51628933 TCTTTTAAAAAGGAAAT---TGT------TTTTACGTAGAGTTTTAGAAAGCCTGTAGTT------CAGGAACTG--TACACTTTCAGAACCCGGGAGTGTCTATAACTAGGTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053196 95 - 2169676 TCTTTTAAAAAGGAGAT---TGC------TTTTAGGTAGAGTTTTAGGAAGGTTGTAGTT------CAGTAACTG--CAGACTTTCAGACCCAGGGAGTG--TATAACTAGGTA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17866987 99 + 84719076 TCTTTAAAAGAGGAAATTACTGC------TTTTACATAGAGCTTTGGAAAGCTTATACTT------CAGGAACTG--CAGACTTTCAGAAACA-GAAGTATTTGTGAATAGGTT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37667 245 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113483 237 + 176633 I a score=6392.000000 s mm10.chr1_GL456221_random 124298 1 + 206961 A s rn5.chr9 92371380 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143072 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133798 1 + 243199373 A i hg19.chr2 C 0 I 1 s panTro4.chr2B 235511524 1 + 247518478 A i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119465565 1 + 131632457 A i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122692076 1 + 135000294 A i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3659499 1 + 6458163 A i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94062098 1 + 106825570 A i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146741467 1 + 158406734 A i calJac3.chr6 C 0 I 1 s micMur1.scaffold_3075 113720 1 + 176633 A i micMur1.scaffold_3075 I 237 I 211 s otoGar3.GL873532 28829740 1 - 32117204 A i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42496714 1 + 51628933 A i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1053291 1 - 2169676 A i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17867086 1 + 84719076 A i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_9232 37667 245 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=17564.000000 s mm10.chr1_GL456221_random 124299 11 + 206961 CCCTGAACCAA s rn5.chr9 92371381 11 + 121549591 CCCTGAAGCAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143073 11 - 10418462 GCATTCAGCCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133800 10 + 243199373 -CATTTGGCCA i hg19.chr2 I 1 C 0 s panTro4.chr2B 235511526 10 + 247518478 -CATTTGGCCA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119465567 10 + 131632457 -CATTTGGCCA i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122692078 10 + 135000294 -CATTTAGCCA i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3659501 10 + 6458163 -CATTTGGCCA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94062100 10 + 106825570 -CATTTGGCCA i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146741469 10 + 158406734 -CATTTGGCCA i calJac3.chr6 I 1 C 0 s otoGar3.GL873532 28829742 8 - 32117204 -TATTTAGT-- i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42496716 7 + 51628933 -CATTTAA--- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1053293 7 - 2169676 -CATTTAG--- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17867088 7 + 84719076 -CATTTAG--- i equCab2.chr6 I 1 C 0 s pteVam1.scaffold_9232 37912 7 + 60856 -CATTCAA--- i pteVam1.scaffold_9232 I 245 I 8 e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113721 211 + 176633 I a score=-13656.000000 s mm10.chr1_GL456221_random 124310 4 + 206961 TC-AT s rn5.chr9 92371392 4 + 121549591 TC-AT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143084 4 - 10418462 CT-GT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133810 5 + 243199373 TCAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511536 5 + 247518478 TCAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465577 5 + 131632457 TCAAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692088 5 + 135000294 TCAAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659511 5 + 6458163 TCAGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062110 5 + 106825570 TCAAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741479 5 + 158406734 TTGAT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829750 2 - 32117204 ---GC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496723 4 + 51628933 TCAG- i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1053300 4 - 2169676 TCAT- i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17867095 4 + 84719076 CCAT- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37919 8 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428072 255 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113721 211 + 176633 I a score=-8541.000000 s mm10.chr1_GL456221_random 124314 4 + 206961 CCA--A s rn5.chr9 92371396 4 + 121549591 CCA--A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143088 4 - 10418462 TCA--G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133815 4 + 243199373 GCA--G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511541 4 + 247518478 GCA--G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465582 4 + 131632457 GCA--G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692093 4 + 135000294 ACG--G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659516 4 + 6458163 GCA--G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062115 4 + 106825570 GCA--G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741484 4 + 158406734 GCA--G i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829752 4 - 32117204 ACA--G i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212428327 3 + 221441202 ACA--- i felCat5.chrC1 I 255 I 8 s canFam3.chr25 42496729 3 + 51628933 ACA--- i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1053306 3 - 2169676 ACA--- i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17867099 3 + 84719076 --AGG- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37919 8 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113721 211 + 176633 I a score=5159.000000 s mm10.chr1_GL456221_random 124318 1 + 206961 G s rn5.chr9 92371400 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143092 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133819 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511545 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465586 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692097 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659520 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062119 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741488 1 + 158406734 G i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829756 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 s pteVam1.scaffold_9232 37927 1 + 60856 A i pteVam1.scaffold_9232 I 8 I 164 e canFam3.chr25 42496732 0 + 51628933 C e ailMel1.GL192536.1 1053309 0 - 2169676 C e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17867102 0 + 84719076 C e felCat5.chrC1 212428330 8 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113721 211 + 176633 I a score=6660.000000 s mm10.chr1_GL456221_random 124319 3 + 206961 CAG s rn5.chr9 92371401 3 + 121549591 CAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143093 3 - 10418462 CTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133820 3 + 243199373 CTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511546 3 + 247518478 CTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465587 3 + 131632457 CTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692098 3 + 135000294 CTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659521 3 + 6458163 CTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062120 3 + 106825570 CTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741489 3 + 158406734 CTT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829757 3 - 32117204 CCT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496732 3 + 51628933 CAG i canFam3.chr25 C 0 I 5 s ailMel1.GL192536.1 1053309 3 - 2169676 TAG i ailMel1.GL192536.1 C 0 I 5 s equCab2.chr6 17867102 3 + 84719076 CAT i equCab2.chr6 C 0 I 7 e pteVam1.scaffold_9232 37928 164 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428330 8 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113721 211 + 176633 I a score=4241.000000 s mm10.chr1_GL456221_random 124322 1 + 206961 T s rn5.chr9 92371404 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143096 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133823 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511549 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465590 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692101 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659524 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062123 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741492 1 + 158406734 T i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829760 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212428338 1 + 221441202 C i felCat5.chrC1 I 8 I 915 s canFam3.chr25 42496740 1 + 51628933 C i canFam3.chr25 I 5 C 0 s ailMel1.GL192536.1 1053317 1 - 2169676 C i ailMel1.GL192536.1 I 5 C 0 s equCab2.chr6 17867112 1 + 84719076 C i equCab2.chr6 I 7 C 0 e pteVam1.scaffold_9232 37928 164 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113721 211 + 176633 I a score=534677.000000 s mm10.chr1_GL456221_random 124323 158 + 206961 TGGAAG-GTGACTACTGCTGATTGGCTGGATTTAAAATTTGTACCACCGCTTCTGATTGGGTAGATTTCAGATGCATGGTTAGCAA-GCAGGTAGTCGATGGTTAAATGGGAAGGGTTGGGAAT-----------TGGTAACATCAGCAAAGGTTACCTTTGACTGTTTTC s rn5.chr9 92371405 158 + 121549591 TAGAGG-GTGACTGCTGCTGATTGGCTGGATTTCAAATTTGTATTGTGGCTTCTGATTGGGTAGATTTCAGAAGCACGGTTAGTGA-GTAGGTAGTCATTGGCTAAATGGGAAGGGTTTGGAAT-----------TGGTACAATCAGCCAAGATTACTTTTGACTGTTTTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143097 151 - 10418462 TTTAAG-GGG--TGTTGGCCGATGGCTCCATGTCAATCCTGCAGGGCTGCCTCTGATTGGCTGACTTTGAGCAATGTGGTTAGTGATGTAAGTGGTCACTGGCAATTTGGGATGAGTTTGAAAA-----------TGGT----TCTGCTGGG--TACTCTTTACTATTTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133824 141 + 243199373 GTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCAGTAATGGGCTCGCTTTCAGAAATGTGACTGGGGATATAAGTAGTCAGTGGCCAATTGGGATGAGTTT--AAA-----------TAGT---------------TGCTTTTCACTATTGTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511550 141 + 247518478 GTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCAGTAATGGGCTCGCTTTCAGAAATGTGACTGGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAA-----------TAGT---------------TGCTTTTCACTATTGTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465591 141 + 131632457 GTGGAG-GGGG-TGTTGCTGACTGGCTGGGCTTCAGATATGTAGAACTGCCAGTAATGGGCTCGCTTTCAGAAATGTGACTGGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAA-----------TAGT---------------TGCTTTTCACTATTGTC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692102 141 + 135000294 CTGGAG-GGGGCTGCTGCTGA-TGGCTGGCCTTCAGATGTATAGAACTGCCACTGATGGGCTAGCTCTCAGAAATGTGGTTAGTGATATAAGTAATCAATGGCCAATTAGGACAAGTTG--AAA-----------CAGT---------------TACTTCTTACTACTttc i ponAbe2.chr2b C 0 I 145 s nomLeu2.GL397366 3659525 141 + 6458163 GTGGAG-GGGG-TGTTGCTGACTGGCTGAGCTTCAGATATGTAGAACTGCCACTAATGGGCTCGCTTTCAGAAATGTGACTAGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAA-----------TAGT---------------TGCTTTTCACTATTGTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062124 141 + 106825570 GTGGAG-GGGGCTGTTGCTGA-TGGCTGGGCTTCAGATATGTAGAACTGCCACTGATGGGCTTGCTTTCAGAAATATGGTTAGTGATATAAGTAGTCAATGGCCAATTGGGATGAGTTT--AAA-----------TAGT---------------TGCTTTTTACTATTGTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741493 141 + 158406734 GTGGAA-GGGGCTGTTGCTGACTGGCTGGGCTTCAAATATGTAGAACTGCCACTGATGGGCTAGCTCTCAGAAATGTGGTTAGTGATATAAGTAGTCAATGGCCAATTGAGATGAGTT---AAA-----------TAGC---------------TACTTTTTACTATTTTN i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829761 140 - 32117204 CTGGTG-GGGGCTGTTGACAATTGGCTGGGTTTCAGATGGGTGGAA--ACCTCAAGTGGGCTGGGTTTAAGAAATGTGAATAGATATGTAAGTAGTCATTAGTCTGTTGGGACTGATTT--AAA-----------TAGC---------------CATGTTTTAGTCTTTTT i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42496741 150 + 51628933 -TGGAGTGTGGCTGTTGCTCATTGGCTGATTTTCAGAAGCGTAACTCTGTCTTTGATTGGCTGGCTTT---AGATGTGGTTAGTGATGTAAGTAGTGATGGCCTAATTGGGATGACTTT--AAAACCCGTTCTGGTAAT---------------TGTTTTTTATAATTTTC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053318 132 - 2169676 -TGGAGTGTGGCTGTGGCTGATTGGCCGATTTTCAGAAG------------------TGGTTGGCTTT---AAATGTGGTTAGTGATGTAAGCAGTGATGGGCCAATTGGGATGAGTTT--AAAACCCATTCTGGTAAT---------------TACTTTTTACAATTTTC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867113 150 + 84719076 -TGGAGTGTGGCTCTTACTGATCGGCTGATTTTCAGAAGTGTAAGGCTGCCGCTCATTGGCTGGCTTT---AAATGTGGTTAGTGATGTAAGTAGTCATTGGCCAATTGAGATGCGTTT--AAAACTGGTTCTGGTTGT---------------TACTTTTTACAATTTTC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 37928 164 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113721 211 + 176633 I a score=19565.000000 s mm10.chr1_GL456221_random 124481 10 + 206961 AA----------AGCAGAGT s rn5.chr9 92371563 20 + 121549591 AAAAAACAAAACAAAACAGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143248 16 - 10418462 AAAGAACA----ACTAGTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133965 15 + 243199373 AAAGAAC-----AGTAGTAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511691 15 + 247518478 AAAGAAC-----AGTAGTAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465732 15 + 131632457 AAAGAAC-----AGTAATAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659666 15 + 6458163 AAAGAAC-----AGTAGTAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062265 15 + 106825570 AAAGAAC-----AGTAGTAT i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28829902 15 - 32117204 AAAGAAC-----AATTAGGT i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42496891 10 + 51628933 AAAGAAC-----AGT----- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053450 10 - 2169676 AAAGAAC-----AGT----- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867263 10 + 84719076 AAAGAAC-----CGT----- i equCab2.chr6 C 0 C 0 e ponAbe2.chr2b 122692243 145 + 135000294 I e pteVam1.scaffold_9232 37928 164 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e calJac3.chr6 146741634 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113721 211 + 176633 I a score=-17359.000000 s mm10.chr1_GL456221_random 124491 4 + 206961 T-----TTA s rn5.chr9 92371583 4 + 121549591 T-----TTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143264 9 - 10418462 TTTTTGTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133980 3 + 243199373 T-----TT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511706 3 + 247518478 T-----TT- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465747 3 + 131632457 T-----TT- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659681 3 + 6458163 T-----TT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062280 3 + 106825570 T-----TT- i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28829917 4 - 32117204 T-----TTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496901 2 + 51628933 ------TG- i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1053460 2 - 2169676 ------TG- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17867273 2 + 84719076 ------TA- i equCab2.chr6 C 0 I 2 s pteVam1.scaffold_9232 38092 4 + 60856 ----TATA- i pteVam1.scaffold_9232 I 164 I 369 e ponAbe2.chr2b 122692243 145 + 135000294 I e oviAri1.chr2 244338562 0 + 263237078 I e calJac3.chr6 146741634 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113721 211 + 176633 I a score=-5816.000000 s mm10.chr1_GL456221_random 124495 35 + 206961 ATCTTCCTCGTGGAAGATAA------------------------GAAC-GTT--------AAATCTTT------ s rn5.chr9 92371587 35 + 121549591 TTCTTCCTCGTGGGAAATAA------------------------GAAC-TTT--------AAAGCTTT------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143273 43 - 10418462 TTTTTTTTTCTGGAAGAAAA------------------------GAAC-TTTTTTTTAAAAAAAAATT------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 231133983 22 + 243199373 --------CTGGAATGATAA------------------------GAGT-TTC-------------CTT------ i hg19.chr2 C 0 I 1 s panTro4.chr2B 235511709 22 + 247518478 --------CTGGAATGATAA------------------------GAGT-TTC-------------CTT------ i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119465750 22 + 131632457 --------CTGGAATGATAA------------------------GAGT-TTC-------------CTT------ i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3659684 22 + 6458163 --------CTGGAATGATAA------------------------GAGT-TTT-------------CTT------ i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94062283 22 + 106825570 --------CTGGAATGATGA------------------------GAGT-TTT-------------CTT------ i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146741634 34 + 158406734 --------------------NNNNNNNNNNNNNNNNNNNNNNNNGAGT-TTT-------------CTT------ i calJac3.chr6 C 0 I 1 s otoGar3.GL873532 28829921 28 - 32117204 TTTTTC--CTGGTAAGACAA------------------------GAAC-TTT-------------TCT------ i otoGar3.GL873532 C 0 I 4 s canFam3.chr25 42496904 33 + 51628933 ---GTTTCCTAGAAGGATAA------------------------GATC-TTT-------------TTATTTTAT i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1053463 34 - 2169676 --TTTTTCCTGGAAGGGTTA------------------------GATC-TTT-------------TTACTTTAT i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17867277 35 + 84719076 --TTTTTCCTGAAACGATAA------------------------GATCTTTT-------------TTATTTTAT i equCab2.chr6 I 2 C 0 e ponAbe2.chr2b 122692243 145 + 135000294 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113721 211 + 176633 I a score=2677.000000 s mm10.chr1_GL456221_random 124530 1 + 206961 C s rn5.chr9 92371622 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143316 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134006 1 + 243199373 C i hg19.chr2 I 1 I 6 s panTro4.chr2B 235511732 1 + 247518478 C i panTro4.chr2B I 1 I 6 s gorGor3.chr2B 119465773 1 + 131632457 C i gorGor3.chr2B I 1 I 6 s nomLeu2.GL397366 3659707 1 + 6458163 C i nomLeu2.GL397366 I 1 I 6 s rheMac3.chr12 94062306 1 + 106825570 C i rheMac3.chr12 I 1 I 6 s calJac3.chr6 146741669 1 + 158406734 C i calJac3.chr6 I 1 I 6 s micMur1.scaffold_3075 113932 1 + 176633 T i micMur1.scaffold_3075 I 211 I 1085 s otoGar3.GL873532 28829953 1 - 32117204 T i otoGar3.GL873532 I 4 C 0 s canFam3.chr25 42496937 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053497 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867312 1 + 84719076 T i equCab2.chr6 C 0 C 0 e ponAbe2.chr2b 122692243 145 + 135000294 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=102353.000000 s mm10.chr1_GL456221_random 124531 29 + 206961 TTTATGACTACCTGTAGTAAATTAAAAG--T- s rn5.chr9 92371623 29 + 121549591 TTTACAGCTACCTGTAGTAAATTAAAGG--T- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143317 30 - 10418462 TCTG-GACTACAAGTAGAAAGATATAAGTTT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134013 30 + 243199373 CTCAGGACTACAAGTACAAAAATAAAAG--TA i hg19.chr2 I 6 C 0 s panTro4.chr2B 235511739 30 + 247518478 CTCAGGACTACAAGTACAAAAATAAAAG--TA i panTro4.chr2B I 6 C 0 s gorGor3.chr2B 119465780 30 + 131632457 CTCAGGACTACAAGTACAAAAATAAAAG--TA i gorGor3.chr2B I 6 C 0 s nomLeu2.GL397366 3659714 30 + 6458163 CTCAGGACTACAAGTACAAAAATAAAAG--TA i nomLeu2.GL397366 I 6 C 0 s rheMac3.chr12 94062313 30 + 106825570 CTCAGTACTACAAGTACGAAAATAAAAG--TA i rheMac3.chr12 I 6 C 0 s calJac3.chr6 146741676 29 + 158406734 CT-AGGACTACAAGTACAAAAATAGAAG--TA i calJac3.chr6 I 6 C 0 s otoGar3.GL873532 28829954 30 - 32117204 CTCAGGGCTAAACGTAGAAAAATAAAAG--TA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496938 30 + 51628933 CTTAGGGTTACAGGTAGAAAAGTAGGTG--TA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053498 30 - 2169676 CTTAGGGCTACAGGTAGAAAAGTAGGAG--TC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867313 30 + 84719076 CTTAAGGCTACAAGTGGAAAAATAAAAG--TA i equCab2.chr6 C 0 C 0 e ponAbe2.chr2b 122692243 145 + 135000294 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 4607 397 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=3409.000000 s mm10.chr1_GL456221_random 124560 1 + 206961 G s rn5.chr9 92371652 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143347 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134043 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511769 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465810 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659744 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062343 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741705 1 + 158406734 G i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829984 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496968 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053528 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867343 1 + 84719076 G i equCab2.chr6 C 0 C 0 s choHof1.scaffold_14362 5004 1 + 23990 A i choHof1.scaffold_14362 I 397 I 19 e ponAbe2.chr2b 122692243 145 + 135000294 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=62600.000000 s mm10.chr1_GL456221_random 124561 18 + 206961 GGAAATGAGAAGTAATGT s rn5.chr9 92371653 18 + 121549591 GAACGTGGGAAATAATGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143348 18 - 10418462 AGAAAAGGCAAGTGAGGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134044 18 + 243199373 AGAAAAGGAGGATGAGGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511770 18 + 247518478 AGAAAAGGAGGATGAGGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465811 18 + 131632457 AGAAAAGGAGGATGAGGT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659745 18 + 6458163 AGAAAAGGAGGATGAGGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062344 18 + 106825570 AAAAAAGGAGGATGAAGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741706 18 + 158406734 AGAAAGGGAGGATGAGGT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28829985 18 - 32117204 AGAAAGGGAGACTGAGGT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496969 17 + 51628933 AAAAA-GCAAGATGAGGT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1053529 17 - 2169676 AGGAA-GAAGAATGAGGT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867344 17 + 84719076 AGAAA-GCAGAATGAGAT i equCab2.chr6 C 0 C 0 e ponAbe2.chr2b 122692243 145 + 135000294 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5005 19 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=3115.000000 s mm10.chr1_GL456221_random 124579 1 + 206961 A s rn5.chr9 92371671 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143366 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134062 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511788 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465829 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3659763 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062362 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741724 1 + 158406734 G i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830003 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42496986 1 + 51628933 A i canFam3.chr25 C 0 I 4 s ailMel1.GL192536.1 1053546 1 - 2169676 A i ailMel1.GL192536.1 C 0 I 4 s equCab2.chr6 17867361 1 + 84719076 G i equCab2.chr6 C 0 I 4 s choHof1.scaffold_14362 5024 1 + 23990 A i choHof1.scaffold_14362 I 19 I 409 e ponAbe2.chr2b 122692243 145 + 135000294 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=5.000000 s mm10.chr1_GL456221_random 124580 1 + 206961 G s rn5.chr9 92371672 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143367 1 - 10418462 T i speTri2.JH393335 C 0 I 1 s hg19.chr2 231134063 1 + 243199373 C i hg19.chr2 C 0 I 3 s panTro4.chr2B 235511789 1 + 247518478 C i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119465830 1 + 131632457 C i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 3659764 1 + 6458163 C i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94062363 1 + 106825570 C i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146741725 1 + 158406734 C i calJac3.chr6 C 0 I 3 s otoGar3.GL873532 28830004 1 - 32117204 C i otoGar3.GL873532 C 0 I 3 e ponAbe2.chr2b 122692243 145 + 135000294 I e canFam3.chr25 42496987 4 + 51628933 I e ailMel1.GL192536.1 1053547 4 - 2169676 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17867362 4 + 84719076 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=78201.000000 s mm10.chr1_GL456221_random 124581 34 + 206961 ATGTGGAAAGAAAATGGCTCCATTTGATCTCGGG s rn5.chr9 92371673 34 + 121549591 ATGCAGAAAGAGAATGGCTCCACTTGATCTTGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143369 34 - 10418462 AAATGGAAAGAGCAGGGCTCTGCTGGATCTTGGG i speTri2.JH393335 I 1 C 0 s hg19.chr2 231134067 34 + 243199373 ACATGGGGAGAGCGTGGCTCTGTTATGTGTCAAA i hg19.chr2 I 3 C 0 s panTro4.chr2B 235511793 34 + 247518478 ACATGGGGAGAGCGTGGCTCTGTTATGTGTCAAA i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119465834 34 + 131632457 ACATGGGGAGAGCGTGGCTCTGTTATGTGTCAAA i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3659768 34 + 6458163 ACATGGGGAGAGCATGGCTCTGTTATGTGTCAAA i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94062367 34 + 106825570 ACATGGGGAGAGCATGGCTCTGTTAAGTGTCAAA i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146741729 30 + 158406734 ACATGGGGAGAGCATGGCTCTGTTATGTAT---- i calJac3.chr6 I 3 C 0 s otoGar3.GL873532 28830008 8 - 32117204 ACA---GAAGA----------------------- i otoGar3.GL873532 I 3 C 0 s canFam3.chr25 42496991 32 + 51628933 AGA--GCAAAAGCATGGCTTTGTCAGATCTCGGT i canFam3.chr25 I 4 C 0 s ailMel1.GL192536.1 1053551 34 - 2169676 AGATGGGAAAAGCATGGCTTTGGCAGCTCTAGGT i ailMel1.GL192536.1 I 4 C 0 s equCab2.chr6 17867366 34 + 84719076 AGATAAGAAAAGCATAGCTCTGTGAGATCTCAGG i equCab2.chr6 I 4 C 0 e ponAbe2.chr2b 122692243 145 + 135000294 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=93745.000000 s mm10.chr1_GL456221_random 124615 17 + 206961 TGTGATTGCTGGAGCAG s rn5.chr9 92371707 17 + 121549591 TGTGATGACTGGAGCAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143403 16 - 10418462 TGTGGTTATT-GAGCAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134101 17 + 243199373 TGTGATTATTGGAGCAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511827 17 + 247518478 TGTGATTATAGGAGCAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465868 17 + 131632457 TGTGATTATTGGAGCAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692388 17 + 135000294 tgggattacaggcgcat i ponAbe2.chr2b I 145 I 1 s nomLeu2.GL397366 3659802 17 + 6458163 TGTGATTATTGGAGCAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062401 17 + 106825570 TGTGATTATTGGAGAAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741759 17 + 158406734 TGTGATTATTGGAGCAG i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830016 6 - 32117204 -----------GAGCAG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42497023 17 + 51628933 TGTGATTATTGGAGCAG i canFam3.chr25 C 0 I 493 s ailMel1.GL192536.1 1053585 17 - 2169676 TGTGATTATTGGAGCAG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867400 17 + 84719076 TGTGATTATTGGAGCTG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=-207.000000 s mm10.chr1_GL456221_random 124632 5 + 206961 TCATT s rn5.chr9 92371724 5 + 121549591 GTTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143419 5 - 10418462 ATATT i speTri2.JH393335 C 0 I 56 s ponAbe2.chr2b 122692406 5 + 135000294 ccacc i ponAbe2.chr2b I 1 C 0 e otoGar3.GL873532 28830022 0 - 32117204 C e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053602 0 - 2169676 C e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94062418 0 + 106825570 C e equCab2.chr6 17867417 0 + 84719076 C e nomLeu2.GL397366 3659819 0 + 6458163 C e gorGor3.chr2B 119465885 0 + 131632457 C e panTro4.chr2B 235511844 0 + 247518478 C e hg19.chr2 231134118 0 + 243199373 C e calJac3.chr6 146741776 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=474.000000 s mm10.chr1_GL456221_random 124637 4 + 206961 CTGT s rn5.chr9 92371729 4 + 121549591 CTGT i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122692411 4 + 135000294 atgc i ponAbe2.chr2b C 0 C 0 e otoGar3.GL873532 28830022 0 - 32117204 C e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053602 0 - 2169676 C e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143424 56 - 10418462 I e rheMac3.chr12 94062418 0 + 106825570 C e equCab2.chr6 17867417 0 + 84719076 C e nomLeu2.GL397366 3659819 0 + 6458163 C e gorGor3.chr2B 119465885 0 + 131632457 C e panTro4.chr2B 235511844 0 + 247518478 C e hg19.chr2 231134118 0 + 243199373 C e calJac3.chr6 146741776 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=-9991.000000 s mm10.chr1_GL456221_random 124641 77 + 206961 TCACATCtttttttttttttttttttttttttttttgtttttgtttttgtttttccgagacagggtttctctgtgta s ponAbe2.chr2b 122692415 46 + 135000294 ccagctaatttttgtatttttagt-------------------------------agagacagggtttcaccatgtt i ponAbe2.chr2b C 0 C 0 s otoGar3.GL873532 28830022 9 - 32117204 --------------------------------------------------------------------GGCCCTGTT i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1053602 5 - 2169676 ------------------------------------------------------------------------GTGTA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867417 5 + 84719076 ------------------------------------------------------------------------GTGTA i equCab2.chr6 C 0 C 0 e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143424 56 - 10418462 I e rheMac3.chr12 94062418 0 + 106825570 C e nomLeu2.GL397366 3659819 0 + 6458163 C e gorGor3.chr2B 119465885 0 + 131632457 C e panTro4.chr2B 235511844 0 + 247518478 C e hg19.chr2 231134118 0 + 243199373 C e calJac3.chr6 146741776 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I e rn5.chr9 92371733 0 + 121549591 C a score=-799.000000 s mm10.chr1_GL456221_random 124718 3 + 206961 gcc s ponAbe2.chr2b 122692461 3 + 135000294 ggc i ponAbe2.chr2b C 0 C 0 s otoGar3.GL873532 28830031 2 - 32117204 GG- i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1053607 3 - 2169676 GTC i ailMel1.GL192536.1 C 0 C 0 e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143424 56 - 10418462 I e rheMac3.chr12 94062418 0 + 106825570 C e equCab2.chr6 17867422 0 + 84719076 C e nomLeu2.GL397366 3659819 0 + 6458163 C e gorGor3.chr2B 119465885 0 + 131632457 C e panTro4.chr2B 235511844 0 + 247518478 C e hg19.chr2 231134118 0 + 243199373 C e calJac3.chr6 146741776 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I e rn5.chr9 92371733 0 + 121549591 C a score=2565.000000 s mm10.chr1_GL456221_random 124721 121 + 206961 ctggctatcctgaaactcactttgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctccc-gagtgctgtgattaaaggcgtgcgccaccatgcccggcCTTCTGTTCAC s ponAbe2.chr2b 122692464 92 + 135000294 caggctgatcttgaattc----------------------ctgacttagtgattcacccacctcagcctcccaaagtgctgggattacaggcgtgagccaccgcacctggc--------cAC i ponAbe2.chr2b C 0 C 0 e otoGar3.GL873532 28830033 0 - 32117204 C e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053610 0 - 2169676 C e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143424 56 - 10418462 I e rheMac3.chr12 94062418 0 + 106825570 C e equCab2.chr6 17867422 0 + 84719076 C e nomLeu2.GL397366 3659819 0 + 6458163 C e gorGor3.chr2B 119465885 0 + 131632457 C e panTro4.chr2B 235511844 0 + 247518478 C e hg19.chr2 231134118 0 + 243199373 C e calJac3.chr6 146741776 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I e rn5.chr9 92371733 0 + 121549591 C a score=-6974.000000 s mm10.chr1_GL456221_random 124842 21 + 206961 ---------------------------------------------------------------------TTCTTAATCTTTACTGTTGTT s rn5.chr9 92371733 21 + 121549591 ---------------------------------------------------------------------TTCTTAGGTTTCGTTGATGTT i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122692556 86 + 135000294 TTCTTACTGTTTTCAAAGAACATTAGTATTTTCTGGAATGATAAGAGCTTTTTAATTTTTTCTATTTTACTCTCAGGACT-ACAAGT--- i ponAbe2.chr2b C 0 I 90 s otoGar3.GL873532 28830033 17 - 32117204 ---------------------------------------------------------------------CTCTCAGGTGT-GTTATT--- i otoGar3.GL873532 C 0 I 7 e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053610 0 - 2169676 C e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143424 56 - 10418462 I e rheMac3.chr12 94062418 0 + 106825570 C e equCab2.chr6 17867422 0 + 84719076 C e nomLeu2.GL397366 3659819 0 + 6458163 C e gorGor3.chr2B 119465885 0 + 131632457 C e panTro4.chr2B 235511844 0 + 247518478 C e hg19.chr2 231134118 0 + 243199373 C e calJac3.chr6 146741776 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=8317.000000 s mm10.chr1_GL456221_random 124863 5 + 206961 GTTTT- s rn5.chr9 92371754 5 + 121549591 GGTTT- i rn5.chr9 C 0 C 0 s hg19.chr2 231134118 5 + 243199373 GTATA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511844 5 + 247518478 GTATA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465885 5 + 131632457 GTATA- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692732 6 + 135000294 GTATAT i ponAbe2.chr2b I 90 C 0 s nomLeu2.GL397366 3659819 5 + 6458163 GTATA- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062418 5 + 106825570 GTATA- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741776 5 + 158406734 GTATA- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830057 5 - 32117204 GTATA- i otoGar3.GL873532 I 7 C 0 e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053610 0 - 2169676 C e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143424 56 - 10418462 I e equCab2.chr6 17867422 0 + 84719076 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=6158.000000 s mm10.chr1_GL456221_random 124868 2 + 206961 TA s rn5.chr9 92371759 2 + 121549591 TA i rn5.chr9 C 0 C 0 s hg19.chr2 231134123 2 + 243199373 TT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511849 2 + 247518478 TT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465890 2 + 131632457 TT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692738 2 + 135000294 TT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659824 2 + 6458163 TT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062423 2 + 106825570 TT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741781 2 + 158406734 TT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830062 2 - 32117204 TT i otoGar3.GL873532 C 0 C 0 s equCab2.chr6 17867422 2 + 84719076 TT i equCab2.chr6 C 0 C 0 e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053610 0 - 2169676 C e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143424 56 - 10418462 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=204897.000000 s mm10.chr1_GL456221_random 124870 55 + 206961 TTTTTCCAAAAAGCAGCTCCTCTTTAGTTCAGACTATC--TGTGCAGT----CAGCAGTGG s rn5.chr9 92371761 36 + 121549591 TTTTTC-----------------------CAGACTATC--TGCGCAGTCAGACAGCAGTGG i rn5.chr9 C 0 C 0 s hg19.chr2 231134125 60 + 243199373 TTTTTCCAGAGAACAGTTCATC-TTAGCTCAGAATATCAGTGTGCAGTATAGCAGCACTGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235511851 60 + 247518478 TTTTTCCAGAGAACAGTTCATC-TTAGCTCAGAATATCAGTATGCAGTATAGCAGCACTGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119465892 60 + 131632457 TTTTTCCAGAGAACAGTTCATC-TTAGCTCAGAATATCAGTGTGCAGTATAGCAGCACTGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692740 60 + 135000294 TTTTTCCAGAGAGCACTTCACC-TTGGCTCAGAATATTAGTGTGCAGCATCATAGCACTGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659826 60 + 6458163 TTTTTCCAGAGAACAGTTCATC-TTAGCTCAGAATATCGGTGTGCAGTATGACAGCACTGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062425 60 + 106825570 TTTTTCCAGAGAACAGTTCATC-TTAGCTCAGAATATCAGTTTGTAGTATGACAGCACTAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741783 60 + 158406734 TTTTTCCAAAGAACACTTCATC-TTAGCTTAGAATAACATTGAGCAGTATGACAGCACTGG i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830064 60 - 32117204 CTTTCCCGAAAAGCAGTTCTTC-TTAGCTTGGAATATAAATGTGTGATGTGACAGCACTGG i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1053610 60 - 2169676 TTTTCCCAGAAGGCAATTCGTG-TTAGCTCAGAATATCAGGGTGCACCATAAAAGCACCAG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867424 60 + 84719076 TTTTCCCCGAAAGCAGTTTATC-TTAGCTCAGAATATCAGTGTGCAGCATGAGAGCACTGG i equCab2.chr6 C 0 C 0 e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143424 56 - 10418462 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=298568.000000 s mm10.chr1_GL456221_random 124925 81 + 206961 GGGCTCTCCTCT-GTCTCTGTCTCAGGATCCATGCACAGCCATTTTCTTAGTTAGGACAAGTATACAGGGTGTTAGATTACG---- s rn5.chr9 92371797 77 + 121549591 GGGCTCTTCTCT-GTCTCTGTCTCAGGATCCGTGTACAA----TTTTTTGGTTAGGATAACTATCCAGGATGCTAGGTCACA---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143480 82 - 10418462 GGACTCTTCCCTGGTCACTGTCTCAGGATCCATGGACAGTAATCTTCTTGTTTCTCATTAGTATCTGGTGAATTAGAAGATC---- i speTri2.JH393335 I 56 C 0 s hg19.chr2 231134185 82 + 243199373 AAACTCTTCTGTGGTCATTGTCTCAGGATCCTTGGACAATAATTTTCTTGTTTCTCATTAGTGTCTAGTGAACTAGAAAATC---- i hg19.chr2 C 0 I 5 s panTro4.chr2B 235511911 82 + 247518478 AAACTCTTCTGTGGTCATTGTCTCAGGATCCTTGGACAATAATTTTCTTGTTTCTCATTAGTGTCTAGTGAACTAGAAAATC---- i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 119465952 82 + 131632457 AAACTCTTCTGTGGTCATTGTCTCAGGATCCTTGGACAATAATTTTCTTGTTTCTCATTAGTGTCTAGTGAACTAGAAAATC---- i gorGor3.chr2B C 0 I 5 s ponAbe2.chr2b 122692800 78 + 135000294 GAACTCTTCTCTGGTCACTGTCTagaggtcacc---caaggaatgt-gtgtgacctctggaagttgaaaagacaaggaaata---- i ponAbe2.chr2b C 0 I 20 s nomLeu2.GL397366 3659886 82 + 6458163 AAACTCCTCTATGGTCATTGTCTCAGGATCCTTGGACAATAATTTTCTTGTTTCTCATTAGTGTCTGGTGAACTAGAAGATC---- i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94062485 82 + 106825570 AAACTCTTCTCTGGTCACTGTGTCAGGATCCTTGGACAGTAATTTTCTTGTTTCTCATTAGTGTCTGGTGAACTAGAAGATC---- i rheMac3.chr12 C 0 I 5 s calJac3.chr6 146741843 82 + 158406734 AAACTCTTCTCTGGCCACTGTCTCAGGATCCTTGGACAATAATTTTCTTCTTTCTCATTAGTCTCCAGTGAACTAAAAGATC---- i calJac3.chr6 C 0 I 5 s otoGar3.GL873532 28830124 82 - 32117204 GGACTCTTCTCTGGTCACTGTCTTAGAATTCATGGATAGTAATTTTCTTGTTTCTCAATAGTATCTGGGGAACTAGAAGATC---- i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1053670 86 - 2169676 AAACTCTTCCCTCAACACTTTCTCAGGATCCATGGGCTGTAATTTGCTTGCTTCTCTTTAGTATCTGGTGAACTAGAAACTCTCCG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867484 86 + 84719076 GAACTCTTCCCTAATCACTGTCTTGGGATCCATGGACAGTAATTTTCTTGTTTCTCTTTAGTATCGAACGAACTAGAAGCTCTCCA i equCab2.chr6 C 0 C 0 e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 113933 1085 + 176633 I a score=-13584.000000 s mm10.chr1_GL456221_random 125006 3 + 206961 -ATG s rn5.chr9 92371874 3 + 121549591 -ACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143562 3 - 10418462 -ACC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134272 3 + 243199373 -ATG i hg19.chr2 I 5 C 0 s panTro4.chr2B 235511998 3 + 247518478 -ATG i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 119466039 3 + 131632457 -ATG i gorGor3.chr2B I 5 C 0 s ponAbe2.chr2b 122692898 3 + 135000294 -aga i ponAbe2.chr2b I 20 C 0 s nomLeu2.GL397366 3659973 3 + 6458163 -AGG i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 94062572 3 + 106825570 -ATG i rheMac3.chr12 I 5 C 0 s calJac3.chr6 146741930 3 + 158406734 -ATG i calJac3.chr6 I 5 C 0 s micMur1.scaffold_3075 115018 1 + 176633 -G-- i micMur1.scaffold_3075 I 1085 I 101 s otoGar3.GL873532 28830206 1 - 32117204 -A-- i otoGar3.GL873532 C 0 I 2 s ailMel1.GL192536.1 1053756 3 - 2169676 AAT- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867570 3 + 84719076 AAT- i equCab2.chr6 C 0 C 0 e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=225431.000000 s mm10.chr1_GL456221_random 125009 76 + 206961 GTACCAAGAGAG-----GGGTTGGAAAGGCTTGCTTCTGACCTGCTGTTCTATGAGAGACAAGGTGACTTGTGCCCTAAAA s rn5.chr9 92371877 75 + 121549591 AAACAAAGAAAG-----GGGTTGGAAGAGCTTGCTTCTGACCTGCTGTTCTGTGAGAGACAAGGTGAC-CATGCCCTAAAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143565 81 - 10418462 AAACGAATAAAGAAGGAGAGTCAGTAGAGCTCACTTCCAACCTGCTCTGCTCTGATGGACAAGGTAATTAGGACTTAAAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134275 76 + 243199373 -----AATGAAGAAGGAGAATCAGAAGAGCTTGCTTCTAGCCTGCTATATGATAATGTACCAGGTAATTATGACTTAAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512001 75 + 247518478 -----AATGAAGAAGGAGAATCAGAAGAGCTTGCTTCTAGCCTGCTATATGATAATGTACCAGGTAATTATGACTT-AAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466042 76 + 131632457 -----AATGAAGAAGGAGAATCAGAAGAGCTTGCTTCTAGCCTGCTATATGATGATGTACCAGGTAATTATGACTTAAAAA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692901 35 + 135000294 -----aaggaataaag-----------------------gcctacta-----------ac------ataatgactt-tagg i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3659976 76 + 6458163 -----AATGGAGAAGGAGAATCAGAAGAGCTTGCTTCTAGCCTGCTACATGATGATGTACCAGGTAATTATGACTTAAAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062575 76 + 106825570 -----AATGAAGAAGGAGAATCAGAAGAGCTCGCTTCTAGCCTGCTACATGATGATGTATCAGGTAATTATGACTTAAAAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146741933 75 + 158406734 -----AATGAAGAAGAAGAATCAGAAGAGCTTGTTTCTAGCCTGCTACATAAGGATGTACCAGGTAATTATGACTTAAAA- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830209 81 - 32117204 AAACAGATGAGGAAGGAGGATCAGACCAGCATACTTCTCGCCTACCATGCGATGATGAGCCAGGTAACTATGGCTTAAAAA i otoGar3.GL873532 I 2 C 0 s ailMel1.GL192536.1 1053759 75 - 2169676 ----GAATAGAGAGGAAGACTCAGAAGAGCTTACTTCCAGCCTACTACCCAATGATGGACAAGGTAATTATGACTTAAA-- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867573 75 + 84719076 ----GCATAGAGAAGGAGAATCAGAAGAGCTTACTTCTAGCCTACTACCCAGTGATGGACAAGATAATTATGACTTAAA-- i equCab2.chr6 C 0 C 0 e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38096 369 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115019 101 + 176633 I a score=-1603.000000 s mm10.chr1_GL456221_random 125085 1 + 206961 -T s rn5.chr9 92371952 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143646 1 - 10418462 -T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134351 1 + 243199373 -T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512076 1 + 247518478 -T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466118 1 + 131632457 -T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692936 1 + 135000294 -c i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660052 1 + 6458163 -T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062651 1 + 106825570 -T i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28830290 1 - 32117204 -T i otoGar3.GL873532 C 0 C 0 s pteVam1.scaffold_9232 38465 1 + 60856 A- i pteVam1.scaffold_9232 I 369 I 16 e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053834 0 - 2169676 C e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17867648 0 + 84719076 C e calJac3.chr6 146742008 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115019 101 + 176633 I a score=-10704.000000 s mm10.chr1_GL456221_random 125086 3 + 206961 AA-T s rn5.chr9 92371953 3 + 121549591 TA-T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143647 3 - 10418462 CA-T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134352 2 + 243199373 AG-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512077 2 + 247518478 AG-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466119 2 + 131632457 AG-- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692937 2 + 135000294 ag-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660053 2 + 6458163 AG-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062652 2 + 106825570 AG-- i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28830291 3 - 32117204 AAT- i otoGar3.GL873532 C 0 I 1 e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053834 0 - 2169676 C e pteVam1.scaffold_9232 38466 16 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17867648 0 + 84719076 C e calJac3.chr6 146742008 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115019 101 + 176633 I a score=1577.000000 s mm10.chr1_GL456221_random 125089 1 + 206961 C s rn5.chr9 92371956 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143650 1 - 10418462 T i speTri2.JH393335 C 0 I 1 s hg19.chr2 231134354 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512079 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466121 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692939 1 + 135000294 t i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660055 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062654 1 + 106825570 T i rheMac3.chr12 C 0 C 0 e otoGar3.GL873532 28830294 1 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053834 0 - 2169676 C e pteVam1.scaffold_9232 38466 16 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17867648 0 + 84719076 C e calJac3.chr6 146742008 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115019 101 + 176633 I a score=9487.000000 s mm10.chr1_GL456221_random 125090 3 + 206961 GAA s rn5.chr9 92371957 3 + 121549591 AAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143652 3 - 10418462 AAA i speTri2.JH393335 I 1 C 0 s hg19.chr2 231134355 3 + 243199373 GAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512080 3 + 247518478 GAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466122 3 + 131632457 GAA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692940 3 + 135000294 gag i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660056 3 + 6458163 GAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062655 3 + 106825570 GAA i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28830295 3 - 32117204 GAA i otoGar3.GL873532 I 1 I 464 e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053834 0 - 2169676 C e pteVam1.scaffold_9232 38466 16 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17867648 0 + 84719076 C e calJac3.chr6 146742008 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115019 101 + 176633 I a score=3036.000000 s mm10.chr1_GL456221_random 125093 2 + 206961 CA s rn5.chr9 92371960 2 + 121549591 CA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143655 2 - 10418462 CA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134358 1 + 243199373 -A i hg19.chr2 C 0 I 6 s panTro4.chr2B 235512083 1 + 247518478 -A i panTro4.chr2B C 0 I 6 s gorGor3.chr2B 119466125 1 + 131632457 -A i gorGor3.chr2B C 0 I 6 s ponAbe2.chr2b 122692943 1 + 135000294 -a i ponAbe2.chr2b C 0 I 6 s nomLeu2.GL397366 3660059 1 + 6458163 -A i nomLeu2.GL397366 C 0 I 6 s rheMac3.chr12 94062658 1 + 106825570 -A i rheMac3.chr12 C 0 I 6 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053834 0 - 2169676 C e pteVam1.scaffold_9232 38466 16 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17867648 0 + 84719076 C e calJac3.chr6 146742008 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115019 101 + 176633 I a score=-265.000000 s mm10.chr1_GL456221_random 125095 1 + 206961 T s rn5.chr9 92371962 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143657 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s pteVam1.scaffold_9232 38482 1 + 60856 T i pteVam1.scaffold_9232 I 16 C 0 e ponAbe2.chr2b 122692944 6 + 135000294 I e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053834 0 - 2169676 C e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94062659 6 + 106825570 I e equCab2.chr6 17867648 0 + 84719076 C e nomLeu2.GL397366 3660060 6 + 6458163 I e gorGor3.chr2B 119466126 6 + 131632457 I e panTro4.chr2B 235512084 6 + 247518478 I e hg19.chr2 231134359 6 + 243199373 I e calJac3.chr6 146742008 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115019 101 + 176633 I a score=2865.000000 s mm10.chr1_GL456221_random 125096 1 + 206961 A s rn5.chr9 92371963 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143658 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134365 1 + 243199373 A i hg19.chr2 I 6 C 0 s panTro4.chr2B 235512090 1 + 247518478 A i panTro4.chr2B I 6 C 0 s gorGor3.chr2B 119466132 1 + 131632457 A i gorGor3.chr2B I 6 C 0 s ponAbe2.chr2b 122692950 1 + 135000294 t i ponAbe2.chr2b I 6 C 0 s nomLeu2.GL397366 3660066 1 + 6458163 A i nomLeu2.GL397366 I 6 C 0 s rheMac3.chr12 94062665 1 + 106825570 A i rheMac3.chr12 I 6 C 0 s micMur1.scaffold_3075 115120 1 + 176633 A i micMur1.scaffold_3075 I 101 I 776 s pteVam1.scaffold_9232 38483 1 + 60856 A i pteVam1.scaffold_9232 C 0 I 55 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053834 0 - 2169676 C e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17867648 0 + 84719076 C e calJac3.chr6 146742008 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=1757.000000 s mm10.chr1_GL456221_random 125097 1 + 206961 T s rn5.chr9 92371964 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143659 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134366 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512091 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466133 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692951 1 + 135000294 c i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660067 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062666 1 + 106825570 C i rheMac3.chr12 C 0 C 0 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053834 0 - 2169676 C e pteVam1.scaffold_9232 38484 55 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17867648 0 + 84719076 C e calJac3.chr6 146742008 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-1283.000000 s mm10.chr1_GL456221_random 125098 2 + 206961 -AT s rn5.chr9 92371965 2 + 121549591 -AC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143660 2 - 10418462 -AC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134367 2 + 243199373 -AG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512092 2 + 247518478 -AG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466134 2 + 131632457 -AG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692952 2 + 135000294 -ac i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660068 2 + 6458163 -AG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062667 2 + 106825570 -AG i rheMac3.chr12 C 0 C 0 s turTru2.JH486691 2100 2 - 63237 TA- i turTru2.JH486691 N 0 I 11947 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053834 0 - 2169676 C e pteVam1.scaffold_9232 38484 55 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17867648 0 + 84719076 C e calJac3.chr6 146742008 0 + 158406734 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=32042.000000 s mm10.chr1_GL456221_random 125100 27 + 206961 AGTTCTGACAAAGGGGGCAAGACAGGA s rn5.chr9 92371967 27 + 121549591 AGTTCTGACAAAGAGGGCAAGACAGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4143662 27 - 10418462 AGTTCTGATAAAGAGGAAAAAACGTGA i speTri2.JH393335 C 0 I 317 s hg19.chr2 231134369 23 + 243199373 AGTTCTGATAAAGAGAAAAAGGA---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512094 23 + 247518478 AGTTCTGATAAAGAGAAAAAGGA---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466136 23 + 131632457 AGTTCTGATAAAGAGAAAAAGGA---- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122692954 23 + 135000294 gcttctcactgacataactggaa---- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660070 23 + 6458163 AGTTCTGATAAACAGAAAAAGGA---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062669 23 + 106825570 AGTTCTGATAAAGAGAAAAAGGA---- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742008 12 + 158406734 -----------ATAGTGAAAACA---- i calJac3.chr6 C 0 C 0 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053834 0 - 2169676 C e pteVam1.scaffold_9232 38484 55 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17867648 0 + 84719076 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=11439.000000 s mm10.chr1_GL456221_random 125127 34 + 206961 GAGG-AAAAATTAAAAACAGGAACTGAAAGAAGGG-------- s rn5.chr9 92371994 34 + 121549591 GAGG-AAAAATTAAAAGCAGAAACTGAAAGACGGG-------- i rn5.chr9 C 0 I 4 s hg19.chr2 231134392 26 + 243199373 GGAG-AAAAAATAGA--------CTTAAAGGAAGA-------- i hg19.chr2 C 0 I 3 s panTro4.chr2B 235512117 26 + 247518478 GGAT-AAAAAATAGA--------CTTAAAGGAAGA-------- i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119466159 26 + 131632457 GGAG-AAAAAATAGA--------CTTAAAGGAAGA-------- i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122692977 23 + 135000294 gata-ataaaATACA-----------AAAATAAAA-------- i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3660093 27 + 6458163 GGAGAAAAAAATAGA--------CTTAAAGGAAGA-------- i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94062692 27 + 106825570 GGAGAAAAAAATAGA--------CTTAAAGGAAGA-------- i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146742020 23 + 158406734 GGAA-CAGAGATATG-----------ACAGGGAGA-------- i calJac3.chr6 C 0 C 0 s ailMel1.GL192536.1 1053834 29 - 2169676 -----GAATAATAAA--------AACAGAAACAGAG-GCTGAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867648 30 + 84719076 -----AAATAATTAA--------AGCAGAAACAGAGTTCTGAT i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38484 55 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-24315.000000 s mm10.chr1_GL456221_random 125161 17 + 206961 AAATG-------------TAAAAATATTTT--------- s rn5.chr9 92372032 17 + 121549591 GAATG-------------TAAAAATATTTT--------- i rn5.chr9 I 4 C 0 s hg19.chr2 231134421 8 + 243199373 AAATA-------------TAA------------------ i hg19.chr2 I 3 C 0 s panTro4.chr2B 235512146 8 + 247518478 AAATA-------------TAA------------------ i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119466188 8 + 131632457 AAATA-------------TAA------------------ i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122693003 21 + 135000294 AAATAACTTTTTTGTTTCTCA------------------ i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3660123 8 + 6458163 AGATA-------------TAA------------------ i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94062722 8 + 106825570 AAATA-------------TAA------------------ i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146742043 4 + 158406734 ----A-------------AAA------------------ i calJac3.chr6 C 0 C 0 s ailMel1.GL192536.1 1053863 17 - 2169676 AAAGA-------------GAA---------AAAGGCAAG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867678 17 + 84719076 AAAGA-------------GAA---------AAAGACCAG i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_9232 38539 5 + 60856 ----------------------------------ATCTG i pteVam1.scaffold_9232 I 55 I 16 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=24615.000000 s mm10.chr1_GL456221_random 125178 10 + 206961 GGAGGAACAA s rn5.chr9 92372049 10 + 121549591 GGAGAAACAA i rn5.chr9 C 0 C 0 s hg19.chr2 231134429 10 + 243199373 GGAGGAGCAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512154 10 + 247518478 GGAGGAGCAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466196 10 + 131632457 GGAGGAGCAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693024 10 + 135000294 TTAGTATCTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660131 10 + 6458163 GGAGGAGCAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062730 10 + 106825570 GGAGGAGCAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742047 10 + 158406734 GGAGAGGAAA i calJac3.chr6 C 0 C 0 s ailMel1.GL192536.1 1053880 10 - 2169676 GGAGGGGAAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867695 10 + 84719076 AGAGGGAAAA i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38544 16 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-10985.000000 s mm10.chr1_GL456221_random 125188 3 + 206961 GAG s rn5.chr9 92372059 3 + 121549591 GAA i rn5.chr9 C 0 C 0 s hg19.chr2 231134439 3 + 243199373 TGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512164 3 + 247518478 TGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466206 3 + 131632457 TGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693034 3 + 135000294 GTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660141 3 + 6458163 TGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062740 3 + 106825570 TGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742057 3 + 158406734 TAA i calJac3.chr6 C 0 C 0 s ailMel1.GL192536.1 1053890 2 - 2169676 AG- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17867705 2 + 84719076 AG- i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_9232 38560 2 + 60856 TG- i pteVam1.scaffold_9232 I 16 I 1778 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=8022.000000 s mm10.chr1_GL456221_random 125191 29 + 206961 AAGGGG----------------------TGGGATCTATGCATTTACAGGAA s rn5.chr9 92372062 51 + 121549591 AAGGGGTGGGAAAAAAAAGAAAAAGGGATGGGACCAATAGACTTACAAAAA i rn5.chr9 C 0 C 0 s hg19.chr2 231134442 20 + 243199373 AAGGAG-------------------------------AAGATTTCAGAGGA i hg19.chr2 C 0 I 70 s panTro4.chr2B 235512167 20 + 247518478 AAGGAG-------------------------------AAGACTTCAGAGGA i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119466209 20 + 131632457 AAGGAG-------------------------------AAGATTTCAGAGGA i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122693037 19 + 135000294 AACTAG-------------------------------AAAATTACCAAAT- i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3660144 20 + 6458163 AAGGAG-------------------------------AAGATTTCAGCGGA i nomLeu2.GL397366 C 0 I 8 s rheMac3.chr12 94062743 20 + 106825570 AAGGAG-------------------------------AAGATTTCAGAGGA i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146742060 16 + 158406734 AAG-----------------------------------AGACTTAAAGGAA i calJac3.chr6 C 0 I 1 s ailMel1.GL192536.1 1053893 14 - 2169676 -------------------------------------GAGACTTACAGGAA i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17867708 14 + 84719076 -------------------------------------GAGATTTAAAGGAA i equCab2.chr6 I 1 C 0 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-16342.000000 s mm10.chr1_GL456221_random 125220 37 + 206961 -GGTCATGTGTCACCGCTggggggagggg---cagtagaa----g- s rn5.chr9 92372113 33 + 121549591 -GGCCATGTGTCACCCTT----GGAGGGA---CAATAGAA----G- i rn5.chr9 C 0 C 0 s panTro4.chr2B 235512190 24 + 247518478 -AGTAAAGAA------------GGGGGAG---CAACAGGG------ i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119466232 24 + 131632457 -AGTAAAGAA------------GGGGGAG---CAACAAGG------ i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122693057 24 + 135000294 -ACCAAAGAA------------GGAGAAT---CAGAAGAG------ i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3660172 19 + 6458163 ------AGAA------------GGGGGAG---CAACAAGG------ i nomLeu2.GL397366 I 8 C 0 s rheMac3.chr12 94062766 23 + 106825570 -AGTAAAGAA------------GG-GGAG---CAACAAGG------ i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146742077 28 + 158406734 -AGTCAAATA------------TTGGGAG---GAGTGGTGAAAG-- i calJac3.chr6 I 1 I 46 s ailMel1.GL192536.1 1053907 15 - 2169676 AGGCCAG-------------------------CAATGGGG------ i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867722 29 + 84719076 GAGTCAGATA------------GAGGAAGAATTAATGGAA-----G i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e hg19.chr2 231134462 70 + 243199373 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=546.000000 s mm10.chr1_GL456221_random 125257 2 + 206961 at s rn5.chr9 92372146 2 + 121549591 AT i rn5.chr9 C 0 C 0 s equCab2.chr6 17867751 2 + 84719076 AT i equCab2.chr6 C 0 I 82 e ponAbe2.chr2b 122693081 0 + 135000294 C e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053922 0 - 2169676 C e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94062789 0 + 106825570 C e nomLeu2.GL397366 3660191 0 + 6458163 C e gorGor3.chr2B 119466256 0 + 131632457 C e panTro4.chr2B 235512214 0 + 247518478 C e hg19.chr2 231134462 70 + 243199373 I e calJac3.chr6 146742105 46 + 158406734 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-2750.000000 s mm10.chr1_GL456221_random 125259 54 + 206961 caacgttcaaggctaccttgggcttgagtaaattcaaggtcaacctggaaaatt s rn5.chr9 92372148 54 + 121549591 CAATgttcaaggctagcttgggctagagtgagtttaagggcaaccagaaaaatt i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122693081 41 + 135000294 -----CTTGTTTCTAGCTTGCTATGATGTGATGT--------ACCAAGTAATTA i ponAbe2.chr2b C 0 C 0 s ailMel1.GL192536.1 1053922 16 - 2169676 ---AGGTCAATGGAAGATT----------------------------------- i ailMel1.GL192536.1 C 0 I 67 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94062789 0 + 106825570 C e equCab2.chr6 17867753 82 + 84719076 I e nomLeu2.GL397366 3660191 0 + 6458163 C e gorGor3.chr2B 119466256 0 + 131632457 C e panTro4.chr2B 235512214 0 + 247518478 C e hg19.chr2 231134462 70 + 243199373 I e calJac3.chr6 146742105 46 + 158406734 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=7171.000000 s mm10.chr1_GL456221_random 125313 24 + 206961 aggtgatatcctgtctaaaaCTGA s rn5.chr9 92372202 24 + 121549591 aggtggtaccctgtctaaaaaTGC i rn5.chr9 C 0 C 0 s panTro4.chr2B 235512214 14 + 247518478 ----------GTGCAGAAAATAGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466256 14 + 131632457 ----------GTGCAGAAAATAGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693122 24 + 135000294 TGACTTAAAAATGTTAAAAACAGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660191 14 + 6458163 ----------GTGCGGAAAATAGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062789 14 + 106825570 ----------GTGCAGAAAAGAGA i rheMac3.chr12 C 0 C 0 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053938 67 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17867753 82 + 84719076 I e hg19.chr2 231134462 70 + 243199373 I e calJac3.chr6 146742105 46 + 158406734 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5025 409 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-2719.000000 s mm10.chr1_GL456221_random 125337 1 + 206961 -A s rn5.chr9 92372226 1 + 121549591 -A i rn5.chr9 C 0 C 0 s panTro4.chr2B 235512228 1 + 247518478 -G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466270 1 + 131632457 -G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693146 1 + 135000294 -A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660205 1 + 6458163 -G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062803 1 + 106825570 -G i rheMac3.chr12 C 0 C 0 s choHof1.scaffold_14362 5434 1 + 23990 T- i choHof1.scaffold_14362 I 409 I 97 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053938 67 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17867753 82 + 84719076 I e hg19.chr2 231134462 70 + 243199373 I e calJac3.chr6 146742105 46 + 158406734 I e felCat5.chrC1 212428339 915 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-12621.000000 s mm10.chr1_GL456221_random 125338 44 + 206961 ACATTA------------------AACAAAACAAAActgaaagtgtagctcactggtagact s rn5.chr9 92372227 32 + 121549591 ACATTA------------------AAAAGTAT----CCAAGGGTGTAGCTC--------ACT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235512229 15 + 247518478 TCACTG-----------------------------------GGTCAAACT------------ i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119466271 15 + 131632457 TCACTG-----------------------------------GGTCAAACT------------ i gorGor3.chr2B C 0 I 4 s ponAbe2.chr2b 122693147 50 + 135000294 ACAGCGTTCTGATAATGAAAAAAAGACAAAAGAGGATAAAAAGGGAGACT------------ i ponAbe2.chr2b C 0 I 120 s nomLeu2.GL397366 3660206 15 + 6458163 TCACTG-----------------------------------GGTCAAACT------------ i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94062804 15 + 106825570 TCACTG-----------------------------------TGTCAAACT------------ i rheMac3.chr12 C 0 I 4 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053938 67 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17867753 82 + 84719076 I e hg19.chr2 231134462 70 + 243199373 I e calJac3.chr6 146742105 46 + 158406734 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5435 97 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=3530.000000 s mm10.chr1_GL456221_random 125382 8 + 206961 gcttgcct s rn5.chr9 92372259 8 + 121549591 GCTTGCTT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235512248 4 + 247518478 ----GTCT i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119466290 4 + 131632457 ----GTCT i gorGor3.chr2B I 4 C 0 s nomLeu2.GL397366 3660225 4 + 6458163 ----GTCT i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94062823 4 + 106825570 ----GTCT i rheMac3.chr12 I 4 C 0 e ponAbe2.chr2b 122693197 120 + 135000294 I e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053938 67 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17867753 82 + 84719076 I e hg19.chr2 231134462 70 + 243199373 I e calJac3.chr6 146742105 46 + 158406734 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5435 97 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=873.000000 s mm10.chr1_GL456221_random 125390 3 + 206961 tgc s rn5.chr9 92372267 3 + 121549591 TGC i rn5.chr9 C 0 C 0 s calJac3.chr6 146742151 3 + 158406734 TGC i calJac3.chr6 I 46 C 0 e ponAbe2.chr2b 122693197 120 + 135000294 I e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053938 67 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4143689 317 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94062827 0 + 106825570 C e equCab2.chr6 17867753 82 + 84719076 I e nomLeu2.GL397366 3660229 0 + 6458163 C e gorGor3.chr2B 119466294 0 + 131632457 C e panTro4.chr2B 235512252 0 + 247518478 C e hg19.chr2 231134462 70 + 243199373 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5435 97 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-2093.000000 s mm10.chr1_GL456221_random 125393 48 + 206961 acaaatgagaccctgagcttggtccccagtattacaaaaTTAGATAAC s rn5.chr9 92372270 47 + 121549591 ACAAATGAG-CCCTGAGCTTGGTACCCAGTATCACAAAATTAAATAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144006 23 - 10418462 GCAAATGAGAC----------GTCTTCAG-------AAAT-------- i speTri2.JH393335 I 317 C 0 s calJac3.chr6 146742154 7 + 158406734 -----------------------------------------AGAAAAA i calJac3.chr6 C 0 C 0 e ponAbe2.chr2b 122693197 120 + 135000294 I e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1053938 67 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94062827 0 + 106825570 C e equCab2.chr6 17867753 82 + 84719076 I e nomLeu2.GL397366 3660229 0 + 6458163 C e gorGor3.chr2B 119466294 0 + 131632457 C e panTro4.chr2B 235512252 0 + 247518478 C e hg19.chr2 231134462 70 + 243199373 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5435 97 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-2956.000000 s mm10.chr1_GL456221_random 125441 12 + 206961 --AAACCTATGTAC s rn5.chr9 92372317 12 + 121549591 --AAACTTACACAC i rn5.chr9 C 0 C 0 s panTro4.chr2B 235512252 8 + 247518478 ------TCATGAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466294 8 + 131632457 ------TCATGAAT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3660229 8 + 6458163 ------TCATGAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062827 8 + 106825570 ------TCATGAAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742161 12 + 158406734 --AGAATCATGGGG i calJac3.chr6 C 0 I 21 s ailMel1.GL192536.1 1054005 12 - 2169676 AAGTCTTCATAC-- i ailMel1.GL192536.1 I 67 C 0 e ponAbe2.chr2b 122693197 120 + 135000294 I e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4144029 0 - 10418462 C e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17867753 82 + 84719076 I e hg19.chr2 231134462 70 + 243199373 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5435 97 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=910.000000 s mm10.chr1_GL456221_random 125453 1 + 206961 A s rn5.chr9 92372329 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231134532 1 + 243199373 A i hg19.chr2 I 70 C 0 s ponAbe2.chr2b 122693317 1 + 135000294 A i ponAbe2.chr2b I 120 C 0 s ailMel1.GL192536.1 1054017 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 e otoGar3.GL873532 28830298 464 - 32117204 I e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4144029 0 - 10418462 C e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94062835 0 + 106825570 C e equCab2.chr6 17867753 82 + 84719076 I e nomLeu2.GL397366 3660237 0 + 6458163 C e gorGor3.chr2B 119466302 0 + 131632457 C e panTro4.chr2B 235512260 0 + 247518478 C e calJac3.chr6 146742173 21 + 158406734 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5435 97 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-2326.000000 s mm10.chr1_GL456221_random 125454 2 + 206961 CC- s rn5.chr9 92372330 2 + 121549591 CC- i rn5.chr9 C 0 C 0 s hg19.chr2 231134533 2 + 243199373 AT- i hg19.chr2 C 0 C 0 s ponAbe2.chr2b 122693318 2 + 135000294 AT- i ponAbe2.chr2b C 0 C 0 s calJac3.chr6 146742194 2 + 158406734 AT- i calJac3.chr6 I 21 C 0 s otoGar3.GL873532 28830762 2 - 32117204 AT- i otoGar3.GL873532 I 464 C 0 s ailMel1.GL192536.1 1054018 2 - 2169676 -TC i ailMel1.GL192536.1 C 0 C 0 e canFam3.chr25 42497040 493 + 51628933 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4144029 0 - 10418462 C e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94062835 0 + 106825570 C e equCab2.chr6 17867753 82 + 84719076 I e nomLeu2.GL397366 3660237 0 + 6458163 C e gorGor3.chr2B 119466302 0 + 131632457 C e panTro4.chr2B 235512260 0 + 247518478 C e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5435 97 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=5159.000000 s mm10.chr1_GL456221_random 125456 1 + 206961 C s rn5.chr9 92372332 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144029 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134535 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512260 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466302 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693320 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660237 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062835 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742196 1 + 158406734 C i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830764 1 - 32117204 C i otoGar3.GL873532 C 0 C 0 s equCab2.chr6 17867835 1 + 84719076 C i equCab2.chr6 I 82 C 0 e canFam3.chr25 42497040 493 + 51628933 I e ailMel1.GL192536.1 1054020 0 - 2169676 C e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5435 97 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=222602.000000 s mm10.chr1_GL456221_random 125457 38 + 206961 ACAATTTTGGCCCAGGAGCACAGCAACCCACACGTGAA--- s rn5.chr9 92372333 38 + 121549591 ACAATTTTGGCCCAGGAGCACAACAACCCACAAGTGAA--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144030 35 - 10418462 ATAATTTTGTTCCAGACACAGAGCAACCAGCAC---AG--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134536 41 + 243199373 ACAATTTTGGCCCAGGAGCGGAGCAATCAGCATATGAAAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512261 41 + 247518478 ACAATTTTGGCCCAGGAGCAGAGCAATCAGCAAATGAAAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466303 41 + 131632457 ACAATTTTGGCCCAGGAGCAGAGCAATCAGCATATGAAAAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693321 41 + 135000294 ACAATTTTTCCCCAGGAGCAGAGCGACCAGCATGTGAAAAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660238 41 + 6458163 ACAATTTTGGCCCAGGAGCAGAGCAATCAGCATATGAAAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062836 41 + 106825570 ACAATTTTGGCCCAGGAGCAGAGCAATCAGCATATGAAAAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742197 41 + 158406734 ACAATTTTGGCCCAGGAGCACAGCAACTAGCATGCGAAAAT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830765 41 - 32117204 ACAATTTGGATCCAGGAGCAGAGCAACCAGAAGATGGAAAT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42497533 41 + 51628933 ACATTTTTGGCCCAGAAGCTGAGCTACCAGCATATGGAAAT i canFam3.chr25 I 493 C 0 s ailMel1.GL192536.1 1054020 41 - 2169676 ACAATTTTGGCCAAGGAGCAGAGCTACCAGCATATGGAAAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867836 41 + 84719076 ATGATTTTGGCCCAGGAGCAGAGCCACCAGCATGTGGAAAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5435 97 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=8666.000000 s mm10.chr1_GL456221_random 125495 1 + 206961 A s rn5.chr9 92372371 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144065 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134577 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512302 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466344 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693362 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660279 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062877 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742238 1 + 158406734 G i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830806 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42497574 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1054061 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17867877 1 + 84719076 G i equCab2.chr6 C 0 C 0 s choHof1.scaffold_14362 5532 1 + 23990 G i choHof1.scaffold_14362 I 97 I 4884 e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212428339 915 + 221441202 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=662269.000000 s mm10.chr1_GL456221_random 125496 132 + 206961 AGAAGTGTTCCTGTGTCATGTGTTCCCCAACATATGTGCCAGAAGACCTGGAAGCAAGGATGGGAAGCAGCCAAGGA-GGTAAGGAGTAGATAAGTCTGC--CCAGCGGTCCTGGG----------TT-AGGGATGGCTCAGTGAG s rn5.chr9 92372372 130 + 121549591 AGAGGTGTACCTGTGTCATGTGTTCCCCAACATATGTGCCAGAAGACCTAGAAGCAAGGATGGGAAGCAGTCAAGGA-GGTAAGGAATAGATAAG--TGC--CCAGGGGTCATGGG----------TT-AGGGATGGCTTGGTGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144066 140 - 10418462 GAAAGTGTTCCTGTGTCATGTGTTTCTCAAGAGATGTGCCAGGAGGCTCAGGAACAGGGGTGGACAGCAGCCAAGCACAGGATGCGACGGGTAAGGCTGC-----GGGGCCGTGGTTCGGGAGGGCTT-TGGGAGGGCTTCGTGGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134578 133 + 243199373 AGAAGTGTTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAAGCCCAGAAGCAAGGACGGAAAGTGATCAAGCGTGTGGCACAATGGGTAAGGCTGT--CTGAGGGCCGTGGG----------AT-GGGGGTGGCTCAGTGGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512303 133 + 247518478 AGAAGTGTTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAAGCCCAGAAGCAAGGACGGAAAGTGATCAAGCGTGTGGCACAATGGGTAAGGCTGT--CTGAGGGCCGTGGG----------AT-GGGGGTGGCTCAGTGGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466345 133 + 131632457 AGAAGTGTTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAAGCCCAGAAGCAAGGACGGAAAGTGATCAAGCGTGTGGCACAATGGGTAAGGCTGT--CTGAGGGCCGTGGG----------AT-GGGGGTGGCTCAGTGGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693363 132 + 135000294 AGAAGTGTTCCTATGTCATGTGTTTCTCAGGAGAAGTGCCAGAAAGCCCGGAAGCAAGGAAGGAAAGTGACCAAGCATGTGGCAAAATGGGTAAGGCTGC--CTGAGGGCTGCAGG----------AT--GGGGTGGCTCAATGGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660280 133 + 6458163 AGAAGTGTTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAAGGCCAGAAGCAAGGACGGAAAGTGATCAAGCGTGTGGCACAATGGGTAAGGCTGT--CTAAGGGCTGTGGG----------AT-GGGGGTGGCTCAGTGGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94062878 133 + 106825570 AGAAGTGTTCCTGTGTCATGTGTTTCTCAGAAGAGGTGCCAGGAGGCCCAGAAGTAAAGATGGAAAGTGATCAAGCATGTGGCACAATGGGTAAGGCTGT--CTGAGGGCTGTGGG----------AT-GGGGGTGGCTTAGTGGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742239 112 + 158406734 AGAAGGGTTCCTGTGTCATGTGTTTCTCAGAAGAAGTGGCAGGAGGCCCAGAAGCAAGGACGGAAAGTGACC--------------------AAGGCTGC--CTGAGGGCCGTGGG----------AT--GGGGTGGCTCAGTGGG i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830807 129 - 32117204 GGAAGTGTTCCTGTGTTATGTGTTTTACAAAAGATGTGCCAGAAGACCCAGAAGCAAGGACAGCAACTGGCCAACCACGAGGCTCAAGGGGTAAGGCTGC--CCCAGGGCC-CGGG----------CT--GGGATGGCTCAGTG-- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42497575 133 + 51628933 AGAAGTGTTCCTGTGTTATGTGCTCCTCAAAGTATGTGCCAGAAGGTCCAGAAGCAAGTACTGCAAGTAGCCAAGCATGTGACACGATGGGTGAGGCTAC--CGGAGGGAAATGGG----------AT-GAGGGTGACTCTATGAG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1054062 134 - 2169676 AGAAGTGTTCCTGTGTTATCTGCTTCTCAAAAGATGTGACAGAAGGTCCAGAAGCAATTACTGCAAGTAGCCAAGCATGTGACACGATGGGTAAGGCTAC--CGGAGGGTCGCGGG----------ATGGGGGGTGGCTCTACAGG i ailMel1.GL192536.1 C 0 I 15 s equCab2.chr6 17867878 135 + 84719076 AGAAATGTTCCTGTGTTATGTGCTTCTCAAAAGATGTGCCAGGAGATCTGGAATCAAGGGTTGGAAGTAGCCAGGGACGTGACACAATGGGTAAGACAGCCTCTGAGGGTCATGGG----------AT-GGGAGTGGCTCCATGGG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=27979.000000 s mm10.chr1_GL456221_random 125628 17 + 206961 AACCCATAGCTTC--------TAGT s rn5.chr9 92372502 23 + 121549591 TACCC--AGCTCCGGATAGAGTAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144206 24 - 10418462 TACCACGGGCCCC-GGTAAAGCAGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134711 25 + 243199373 CCCCACAGACCCCCAGTAGGGTGGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512436 25 + 247518478 CCCCACAGACCCCCAGTAGGGTGGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466478 25 + 131632457 CCCCACAGACCCCCAGTAGGGTGGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693495 25 + 135000294 CCCCACAGACCCTGGGAAGAGTGGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660413 25 + 6458163 CCCCACAGACCCCCAGTAGGGTGGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063011 25 + 106825570 CCCCACAGACCCCCAGTAGGGTGGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742351 25 + 158406734 CCCCACAGACCCCCAGTAGAGTGGA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830936 18 - 32117204 -------CACCTGGGGTACAGGGGA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42497708 12 + 51628933 -------------CAGGGTGATGGC i canFam3.chr25 C 0 I 7 s equCab2.chr6 17868013 16 + 84719076 ---------TACCAAATATCTTGGT i equCab2.chr6 C 0 I 3 e ailMel1.GL192536.1 1054196 15 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212428339 915 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-7964.000000 s mm10.chr1_GL456221_random 125645 5 + 206961 --CCGGT s rn5.chr9 92372525 5 + 121549591 --AGCTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144230 5 - 10418462 --GACTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134736 5 + 243199373 --GGTAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512461 5 + 247518478 --GGTAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466503 5 + 131632457 --GGTAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693520 5 + 135000294 --GGCAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660438 5 + 6458163 --GGTAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063036 5 + 106825570 --GGTAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742376 5 + 158406734 --GGCAG i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830954 5 - 32117204 --GACAG i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212429254 5 + 221441202 AGGAT-- i felCat5.chrC1 I 915 I 233 s canFam3.chr25 42497727 5 + 51628933 CTGGT-- i canFam3.chr25 I 7 I 1 s equCab2.chr6 17868032 5 + 84719076 ATGGT-- i equCab2.chr6 I 3 I 6 e ailMel1.GL192536.1 1054196 15 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=1450.000000 s mm10.chr1_GL456221_random 125650 1 + 206961 C s rn5.chr9 92372530 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144235 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134741 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512466 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466508 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693525 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660443 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063041 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742381 1 + 158406734 G i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830959 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42497732 1 + 51628933 I e ailMel1.GL192536.1 1054196 15 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17868037 6 + 84719076 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=561020.000000 s mm10.chr1_GL456221_random 125651 131 + 206961 TAGTCCAGTCCA-TCCAAGAATCCAGTCCT-CTGCATTTTCTTG----------TT-GGGAGCTGGAGAGAAGCAAGAAACTTTTACAGAGCCATGTGGGAGGAGATGGAGTCAGTTGGTCACATGTAGATGAAGTAGAAGAAA s rn5.chr9 92372531 130 + 121549591 TGGTCTAGTCCA-TCCAAGAATCCAGTCCTCCTGTACTTCCTTG----------TT--GGAGCTGGAGAGAAGCAAGAAACATTTCCAGAGCCACGTGGGAGGAGA-GGAGTCAGTTGGTCCCATGTAAATGATGAAGAAGAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144236 138 - 10418462 TGATGCAGTCCA-TCCCAGAATCCCTCTCT-CTGTGTTTGCTTGGCCTGAGGCTTT-GGGACCTGCAGGGAGGCTAGAAATCTTTATACAGTCCCATTTAACAGGATGGGTTCTGTTGAGCATGTAAGCACGATGT---AAAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134742 141 + 243199373 TGCTCCAGTCTG-TCC-AGAATTCTATTCT-CCGCATTTGCTTGACCTGAGCCTTTGGGGAGCTGCAGGGAGGCAAGAGATCGTTATAAAGTACTATTTAAGAGGATGGACTCTGTTGATTAGACATAGATGATGTCATAGAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512467 141 + 247518478 TGCTCCAGTCTG-TCC-AGAATTCTATTCT-CCGCATTTTCTTGACCTGAGCCTTTGGGGAACTGCAGGGAGGCAAGAGATCGTTATAAAGTACTATTTAAGAGGATGGACTCTGTTGATTAGACATAGATGAGGTCATAGAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466509 141 + 131632457 TGCTCCAGTCTG-TCC-AGAATTCTATTCT-CCGCATTTGCTTGACCTGAGCCTTTGGGGAACTGCAGGGAGGCAAGAGATCGTTATAAAGTACTATCTAAGAGGATGGACTCTGTTGATTAGACATAGATGATGTCATAGAAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693526 141 + 135000294 TGCTCCAGTCCG-CCC-AGAATCCTGTTCT-CTGCATTTGCTTCAACCAAGCCTTTGGGGAACTGCAGGGAGGCAAGAGATCATTATAAAGTTTTACTTATCAAGATGGGCTCTGTTGATTACATATGGGTGACGTCATAGAAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660444 141 + 6458163 TGCTCCAGTCTG-TCC-AGAATTCTATTCT-CCGCATTTGCTTGACCTGAGCCTTTGGGGAACTGCAGGGAGGCAAGAGATCGTTATAAAGTACTATTTAAGAGGATGGACTCTGTTGATTAGACATAGATGATGTCATAGAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063042 141 + 106825570 TGCTCCAGTCTG-TCT-AGAATCCTATTCT-TTGCATTTGGTTCACTTGAGCCTTTGGGGAACTGCAGGGAGGCAAGAGATCGCTATAAAGTAATATTTAAGAGGATGGACTCTGCTGATTAGACATAGATGATGTCATAAAAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742382 141 + 158406734 TGCTCCAGTCTG-TCC-AGAATTCTGTTCT-CAGCATTTCCTTGACCTGAGCCTTTGGGGAACTGCAGGGAGGCAAGAGATCATTATAAAGTCGTATTTAAGAGGATGGGCTCTGTTAATTACATATAGATGATGTCATAGAAG i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28830960 131 - 32117204 ---TTCATTCCACCCC-AGAATCCTG-TCT-CTGC----TCTCTGACTGAGCCTTT-TGGAACCACAGGGAGACAGGAAATCATGGT--AGTCATGTTTAATGGGATGGGCTTTGTTCGTTAGACATAGATGAGGCAGCAGAAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42497733 130 + 51628933 ----------CA-TTCCAGTAT-CTGCTCT-CTAC-TTTGCTTGACCTGACCCATTTGGGAAAAGTAGAGAGCCAAGAGACCATCTTAAAGTCATGTTTAACAGGATGGGCCCTGCTGATTACACATGAGTGATGTAGTAGAAA i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1054211 141 - 2169676 TGGTCTGGTCCA-TCCCAGTATCCTGTTCC-CTGT-TTTACTTGACCTGACTCTTTGGGGAATAGTAGAGAGGCAAGAGATCATCATAAAGTCGTGTTTAACAGGATGGGCCCTGCTGATTACACATGAGTGATGTTGTAGAAA i ailMel1.GL192536.1 I 15 I 427 s equCab2.chr6 17868043 140 + 84719076 GGGGCCAGTCCA-TCCCACTGTCCTGTTCT-CTGCATTTGCTTGAGCTGACTCTTTT-AGAATAGCAGTGGGGCAAGAGATCATTATAAAGTTATGTTT-ATAGGATGGGCCTTGTTGATTATATATGGATGATGTAGTAGAAA i equCab2.chr6 I 6 C 0 e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=33214.000000 s mm10.chr1_GL456221_random 125782 8 + 206961 TGTACTCt s rn5.chr9 92372661 8 + 121549591 TGCAttgt i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144374 8 - 10418462 TGCACTCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231134883 8 + 243199373 TATACTCT i hg19.chr2 C 0 I 6 s panTro4.chr2B 235512608 8 + 247518478 TATACTCT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119466650 8 + 131632457 TATACTCT i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122693667 8 + 135000294 GGTGCTCT i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3660585 8 + 6458163 TATACTCT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94063183 8 + 106825570 TATACTCT i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146742523 8 + 158406734 TATATTCT i calJac3.chr6 C 0 I 1 s otoGar3.GL873532 28831091 8 - 32117204 TGCACTAT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42497863 8 + 51628933 CATGCTTT i canFam3.chr25 C 0 C 0 s equCab2.chr6 17868183 8 + 84719076 TGCACTCT i equCab2.chr6 C 0 C 0 e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=6006.000000 s mm10.chr1_GL456221_random 125790 1 + 206961 t s rn5.chr9 92372669 1 + 121549591 t i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144382 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235512617 1 + 247518478 T i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119466659 1 + 131632457 T i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122693676 1 + 135000294 T i ponAbe2.chr2b I 1 I 14 s nomLeu2.GL397366 3660594 1 + 6458163 T i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94063192 1 + 106825570 T i rheMac3.chr12 I 1 I 12 s calJac3.chr6 146742532 1 + 158406734 T i calJac3.chr6 I 1 I 13 s otoGar3.GL873532 28831099 1 - 32117204 T i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42497871 1 + 51628933 T i canFam3.chr25 C 0 I 226 s equCab2.chr6 17868191 1 + 84719076 T i equCab2.chr6 C 0 I 76 e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e hg19.chr2 231134891 6 + 243199373 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=91.000000 s mm10.chr1_GL456221_random 125791 1 + 206961 t s speTri2.JH393335 4144383 1 - 10418462 T i speTri2.JH393335 C 0 I 27 e ponAbe2.chr2b 122693677 14 + 135000294 I e otoGar3.GL873532 28831100 1 - 32117204 I e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063193 12 + 106825570 I e equCab2.chr6 17868192 76 + 84719076 I e nomLeu2.GL397366 3660595 0 + 6458163 C e gorGor3.chr2B 119466660 0 + 131632457 C e panTro4.chr2B 235512618 0 + 247518478 C e hg19.chr2 231134891 6 + 243199373 I e calJac3.chr6 146742533 13 + 158406734 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I e rn5.chr9 92372670 0 + 121549591 C a score=5347.000000 s mm10.chr1_GL456221_random 125792 11 + 206961 tttaattcatt s rn5.chr9 92372670 7 + 121549591 ----attaatt i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122693691 10 + 135000294 -CCTGTTTATT i ponAbe2.chr2b I 14 I 1 s rheMac3.chr12 94063205 11 + 106825570 TCTTGTTGATT i rheMac3.chr12 I 12 I 1 s calJac3.chr6 146742546 11 + 158406734 TCTCATTTATT i calJac3.chr6 I 13 I 1 s otoGar3.GL873532 28831101 11 - 32117204 TCTGGTTTACT i otoGar3.GL873532 I 1 I 384 e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4144384 27 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17868192 76 + 84719076 I e nomLeu2.GL397366 3660595 0 + 6458163 C e gorGor3.chr2B 119466660 0 + 131632457 C e panTro4.chr2B 235512618 0 + 247518478 C e hg19.chr2 231134891 6 + 243199373 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=8716.000000 s mm10.chr1_GL456221_random 125803 23 + 206961 cattaatgcattcattcacaccc s rn5.chr9 92372677 21 + 121549591 aattaat--aattaataataccc i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122693702 23 + 135000294 CATTAATATGTTAAGTCACACTC i ponAbe2.chr2b I 1 C 0 s rheMac3.chr12 94063217 23 + 106825570 CATTAGTATATTAAGTTACACCC i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146742558 23 + 158406734 TATTAGTATATTAAGTTTTACCC i calJac3.chr6 I 1 I 171 e otoGar3.GL873532 28831112 384 - 32117204 I e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4144384 27 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17868192 76 + 84719076 I e nomLeu2.GL397366 3660595 0 + 6458163 C e gorGor3.chr2B 119466660 0 + 131632457 C e panTro4.chr2B 235512618 0 + 247518478 C e hg19.chr2 231134891 6 + 243199373 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-69.000000 s mm10.chr1_GL456221_random 125826 5 + 206961 caaat-- s rn5.chr9 92372698 5 + 121549591 caaat-- i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122693725 5 + 135000294 --AATAT i ponAbe2.chr2b C 0 N 0 s rheMac3.chr12 94063240 5 + 106825570 --AATAT i rheMac3.chr12 C 0 I 166 e otoGar3.GL873532 28831112 384 - 32117204 I e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4144384 27 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17868192 76 + 84719076 I e nomLeu2.GL397366 3660595 0 + 6458163 C e gorGor3.chr2B 119466660 0 + 131632457 C e panTro4.chr2B 235512618 0 + 247518478 C e hg19.chr2 231134891 6 + 243199373 I e calJac3.chr6 146742581 171 + 158406734 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=43649.000000 s mm10.chr1_GL456221_random 125831 723 + 206961 ac--tgcactcccagtcccagtcccctacccccttagagtccttccttcatccccttctccttcgcctctgagagagtgaagatctcccccttatgagtatccctcccactgtagtgtatcaagtctctacaggattaggcacatcttctccccctgaggccagacaaggcagtcctctggtacatttgtcctgggagccctggtccagctcctataggctctttggttggtagctcagtctctgagagctcccagggctctggtt-------tactgttggtcttcctgtggagtttctacccccttcagggcctccaatccttccccaaacacttccataaggatccctgagctatgtccaatgtttagctgtagatatctgcatctgtttcagtcagctgctggttagag---ctcagaggacagttatactagggtcctgtgtgtgagcataacagagtatcattaatagtatcagggattggttcttgctcatgggatgaatctcaagttgggctagttacaggttggccattccagcagtttctgccccatctttatccctacatttcttttaaccagaacatatttggggtagaaagttttgtaggtgagttagtatccttatcttcccagtggagtttctacctgg-------ctacaggaggtagcatcttctggttccatatctacagtgttaggtgtcttagataaggtcaccTGAAAAATTAAACTCTTC s rn5.chr9 92372703 705 + 121549591 gctgtgcccccccagtcccagtcc----ccacctcag------------attcccttctcctttgcctctgagagggtagaa---cctcccctcccagtatccccca------agtgtatcaagtctctgcaggattaggcacatct----cccccgaggccagacaaggcggccctctgctacatatgtcccaggagcctcggtccagctcctatatgctctttggttggtgactcagtctctgagagctcccagggttctggattagttcatactgttggtcttcctgtggagtttctatccccttcagggccttcaatccttccccaaactctaccgtaacggtccctagcctctgtccaatgtttggctgtgggtatctgcatccttttcagtcagctgctgggtagagcctctcagaggatagttatgctagggtcctgtctgtaagcacaacagagtatcattaatggt--------ttggttttggctcatgggattgatctcaagttgggcaggttataggttggccattcctacagtctctgccccatctttatcctcccacttcttttaggcaggatgaactttgggtagaaaattttgtagttgggttggtgtccttatccctcccctgggatttctgcctggaggatgctgccaggaggtagcatcttctggttccagatccccagtgttaggcatctcggataaggccacctgGAAAATTAAACTCTTA i rn5.chr9 C 0 C 0 e otoGar3.GL873532 28831112 384 - 32117204 I e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4144384 27 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063245 166 + 106825570 I e equCab2.chr6 17868192 76 + 84719076 I e nomLeu2.GL397366 3660595 0 + 6458163 C e gorGor3.chr2B 119466660 0 + 131632457 C e panTro4.chr2B 235512618 0 + 247518478 C e hg19.chr2 231134891 6 + 243199373 I e calJac3.chr6 146742581 171 + 158406734 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=2047.000000 s mm10.chr1_GL456221_random 126554 4 + 206961 AAGC s rn5.chr9 92373408 4 + 121549591 AAAC i rn5.chr9 C 0 C 0 s panTro4.chr2B 235512618 2 + 247518478 --GC i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119466660 2 + 131632457 --GC i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122584354 2 + 135000294 --GC i ponAbe2.chr2b N 0 I 2 s nomLeu2.GL397366 3660595 2 + 6458163 --GC i nomLeu2.GL397366 C 0 I 2 e otoGar3.GL873532 28831112 384 - 32117204 I e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4144384 27 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063245 166 + 106825570 I e equCab2.chr6 17868192 76 + 84719076 I e hg19.chr2 231134891 6 + 243199373 I e calJac3.chr6 146742581 171 + 158406734 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=43737.000000 s mm10.chr1_GL456221_random 126558 33 + 206961 CATCACTTATCTTGTCTGCTGCTCT-AGGTACTG s rn5.chr9 92373412 34 + 121549591 CACCACTTATCTTGTCTGCTGCCCTGATGTATCG i rn5.chr9 C 0 C 0 s hg19.chr2 231134897 34 + 243199373 TGGCACTTATCTTGTGTATTGCATTAGTATATTA i hg19.chr2 I 6 C 0 s panTro4.chr2B 235512622 34 + 247518478 TGGCACTTATCTTGTGTATTGCATTAGTATATTA i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119466664 34 + 131632457 TGGCACTTATCTTGTGTATTGCATTAGTATATTA i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122584358 34 + 135000294 TGGCACTTATCTTGTGTATTGCATTAGTATATTA i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3660599 34 + 6458163 TGGCACTTATCTTGTGTATTGCATTAGTATATTA i nomLeu2.GL397366 I 2 C 0 e otoGar3.GL873532 28831112 384 - 32117204 I e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4144384 27 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063245 166 + 106825570 I e equCab2.chr6 17868192 76 + 84719076 I e calJac3.chr6 146742581 171 + 158406734 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=2548.000000 s mm10.chr1_GL456221_random 126591 1 + 206961 A s rn5.chr9 92373446 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144411 1 - 10418462 A i speTri2.JH393335 I 27 C 0 s hg19.chr2 231134931 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512656 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466698 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122584392 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660633 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 e otoGar3.GL873532 28831112 384 - 32117204 I e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063245 166 + 106825570 I e equCab2.chr6 17868192 76 + 84719076 I e calJac3.chr6 146742581 171 + 158406734 I e felCat5.chrC1 212429259 233 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=145637.000000 s mm10.chr1_GL456221_random 126592 57 + 206961 GTCACACCCATTCTTCCCTGCCACCCAGGACTGCTGAGTCACCTTTTGCAGCTAGAT s rn5.chr9 92373447 57 + 121549591 GTCATACCCATTCTTCCCTGCCACCCAGAGGGGCTGAGTAAACTTTTGCAGCTAGAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144412 57 - 10418462 GTTAAACACAATTTTCCCAGGAACCCAAGAAAACCACCTAAACTTCCGCTGCTAGAC i speTri2.JH393335 C 0 I 54 s hg19.chr2 231134932 57 + 243199373 GTTACACCCAATCTTCCATGAAGCCCAGGATACCCCAGTGAACTTCTGCTGGTAGAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512657 57 + 247518478 GTTACACCCAATCTTCCATGAAGCCCAGGATACCCCAGTGAACTTCTGCTGGTAGAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466699 57 + 131632457 GTTACACCCAATCTTCCATGAAGCCCAGGATACCCCAGTGAACTTCTGCTGGTAGAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122584393 57 + 135000294 GTTACACCCAATCTTCCATGAAGCCCAGGATACCCAAGTGAACTTCTGCTGGTAGAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660634 57 + 6458163 GTTACACCCAATCTTCCATGAAGCCCAGGATACCCCAGTGAACTTCTGCTGGTAGAT i nomLeu2.GL397366 C 0 C 0 s felCat5.chrC1 212429492 57 + 221441202 GTCACAGCCAATCTCCTGTGGAGCCCAagaaagccaaccatacttctgctagtagat i felCat5.chrC1 I 233 C 0 s equCab2.chr6 17868268 57 + 84719076 GTCACACCCAATCTTCAGTGGAACCCAagaaagccaagtgtacttctactagtggat i equCab2.chr6 I 76 C 0 e otoGar3.GL873532 28831112 384 - 32117204 I e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063245 166 + 106825570 I e calJac3.chr6 146742581 171 + 158406734 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=45924.000000 s mm10.chr1_GL456221_random 126649 48 + 206961 ATTTTTTAGCTGCCATGCTA------TGATAAGGCCA---------TCCCTAC--TGTGTGAACC--------- s rn5.chr9 92373504 57 + 121549591 A--ATAAAGTTGCTGTGTCA------TGGTAAGGCTGTGACAAAGCTTCCTACTGTGTGTGAGCT--------- i rn5.chr9 C 0 C 0 s hg19.chr2 231134989 50 + 243199373 --AATAGTGTCACTTTGCTACAACT-TAGAAAGGCCA---------CActcaa---aagacaact--------- i hg19.chr2 C 0 I 10 s panTro4.chr2B 235512714 50 + 247518478 --AATAGTGTCACTttgctacaact-tagaaaggcca---------cactcaa---aagacaact--------- i panTro4.chr2B C 0 I 10 s gorGor3.chr2B 119466756 50 + 131632457 --AATAGTGTCACTTTGCTACAACT-TAGAAAGGCCA---------CGCTCAA---AAGACAACG--------- i gorGor3.chr2B C 0 I 10 s ponAbe2.chr2b 122584450 50 + 135000294 --AATAGTGTCACTTTGCTACAACT-TAGAAAGGCCA---------CActcaa---aagacaact--------- i ponAbe2.chr2b C 0 I 10 s nomLeu2.GL397366 3660691 50 + 6458163 --AATAGTGTCACTttgctacaact-tagaaaggcca---------cactcaa---aagacaact--------- i nomLeu2.GL397366 C 0 I 10 s felCat5.chrC1 212429549 57 + 221441202 --aatagtgtcattttgtcacaaccttagaaaac------------tactcaa---aagacaactgatcgtgcc i felCat5.chrC1 C 0 C 0 s equCab2.chr6 17868325 56 + 84719076 --aatggtgtcattttgtcacaactgtagaaaag------------c-ctcaa---aagacaactgattctgcc i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28831112 384 - 32117204 I e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4144469 54 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063245 166 + 106825570 I e calJac3.chr6 146742581 171 + 158406734 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=62402.000000 s mm10.chr1_GL456221_random 126697 31 + 206961 -TCTGCTTTGGAGGAGGAGAGAGTTCAGG----------CCA s rn5.chr9 92373561 35 + 121549591 -GCTGCTTC------TGAAAGAGTTCAGGTCAACTATTTTCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144523 41 - 10418462 -tctaactggcaggaggaaaggcttcagaccagctgttctca i speTri2.JH393335 I 54 C 0 s hg19.chr2 231135049 41 + 243199373 -cttaattgtcaggaggaaagactgcaggtctactcttctta i hg19.chr2 I 10 C 0 s panTro4.chr2B 235512774 41 + 247518478 -cttaattgtcaggaggaaagactgcaggtctactcttctta i panTro4.chr2B I 10 C 0 s gorGor3.chr2B 119466816 41 + 131632457 -CTTAATTGTCAGGAGGAAAGACTGCAGGTCTACTCTTCTTA i gorGor3.chr2B I 10 C 0 s ponAbe2.chr2b 122584510 41 + 135000294 -cttaattgtcaggaggaaagactgcaggtctactcttctta i ponAbe2.chr2b I 10 C 0 s nomLeu2.GL397366 3660751 41 + 6458163 -cttaattgtcaggaggaaagactgcaggtctactcttctta i nomLeu2.GL397366 I 10 C 0 s felCat5.chrC1 212429606 28 + 221441202 acttaattgtcatgaggaaagact----attc---------- i felCat5.chrC1 C 0 I 173 s equCab2.chr6 17868381 32 + 84719076 ccttaattgttggaaggaaagacttcagatca---------- i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28831112 384 - 32117204 I e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063245 166 + 106825570 I e calJac3.chr6 146742581 171 + 158406734 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=16222.000000 s mm10.chr1_GL456221_random 126728 24 + 206961 ----------ATCTGGGGTGCATTCCCAACCAAA-- s rn5.chr9 92373596 24 + 121549591 ----------ATCCAGTGTACCCTCCCAACCAAC-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144564 24 - 10418462 ----------atccagggcacgttttctactgag-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135090 22 + 243199373 ----------gcccaacacgtatttttgatag---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512815 22 + 247518478 ----------gcccaacacgtatttttgatag---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466857 22 + 131632457 ----------GCCCAACACGTATTTTTGATAG---- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122584551 22 + 135000294 ----------gcccaacacgtatttttgatag---- i ponAbe2.chr2b C 0 N 0 s nomLeu2.GL397366 3660792 22 + 6458163 ----------gcccaacacgtatttttgatag---- i nomLeu2.GL397366 C 0 C 0 s equCab2.chr6 17868413 34 + 84719076 attattcttaacccagtacatatttttggtgg--at i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28831112 384 - 32117204 I e canFam3.chr25 42497872 226 + 51628933 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063245 166 + 106825570 I e calJac3.chr6 146742581 171 + 158406734 I e felCat5.chrC1 212429634 173 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=1604.000000 s mm10.chr1_GL456221_random 126752 119 + 206961 GCCCTCAAGCATGTCAGAGAACCAGTTAGGGCTTGCCTACAACACTTCCTACC---AAATTCTCA-----TTTTATTTGTAC-AAAA------------------------------------ATGTGTTAACATATA-A--AATGTCTCATAGGGAGGTAGT----AGTG s rn5.chr9 92373620 109 + 121549591 ATCCTTACGTGTGTCAAAGAACCAATCAGGACTTGCCTAGAACACTTCCTACC---CCATTCTCA-----TTTTATTTGTAC-AAAA------------------------------------ATGTGTTAATATATA-A--CATGTCTCATAGGGA-------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144588 146 - 10418462 agcctccaacgtgtcactgatttGCACAGGGATTGCCTATATAATTT--TGCA---AAATTTTAAATCTTATTTATCTGTAG-AAAA-TCTGAAGGCCTAAGCAAG---GGCAGGGGCACTGCTTCTATTACTAAAGA-AACAGTGTTTCAAAGTCC-------------- i speTri2.JH393335 C 0 C 0 s canFam3.chr25 42498098 137 + 51628933 gccctctagcatgtcactggcttatctagtgatttcctataAATGTT--TGCATGTAAGATTTTA-----TTTAATCCTCAC-AAAAATCTTAAGACCTAAACAAA----------------TATCCCTGAGTAAACT-G--AGTA---CATGG----GCATTTCAGAGTG i canFam3.chr25 I 226 I 8 s equCab2.chr6 17868447 155 + 84719076 gccctccagcgtgtcactggtttatatagtgatttcttgtagacttt--tgcacataggatctaa-----tttaattctcataaaaaattttcagacctaggcaggataggataactgtccctatgcctgagtaaactaa--agtg---catag----gtatttaagagtg i equCab2.chr6 C 0 I 9 e otoGar3.GL873532 28831112 384 - 32117204 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063245 166 + 106825570 I e nomLeu2.GL397366 3660814 0 + 6458163 C e gorGor3.chr2B 119466879 0 + 131632457 C e panTro4.chr2B 235512837 0 + 247518478 C e hg19.chr2 231135112 0 + 243199373 C e calJac3.chr6 146742581 171 + 158406734 I e felCat5.chrC1 212429634 173 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=-4119.000000 s mm10.chr1_GL456221_random 126871 12 + 206961 ---GTGGTGGTGGGG s rn5.chr9 92373729 10 + 121549591 -----GGTTGGGGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144734 10 - 10418462 -----TGTTGTGGAA i speTri2.JH393335 C 0 C 0 s felCat5.chrC1 212429807 12 + 221441202 ATTACTATCGAG--- i felCat5.chrC1 I 173 C 0 s canFam3.chr25 42498243 12 + 51628933 AGCACCGTTGAG--- i canFam3.chr25 I 8 C 0 s equCab2.chr6 17868611 11 + 84719076 -gtcctattgag--- i equCab2.chr6 I 9 C 0 e otoGar3.GL873532 28831112 384 - 32117204 I e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063245 166 + 106825570 I e nomLeu2.GL397366 3660814 0 + 6458163 C e gorGor3.chr2B 119466879 0 + 131632457 C e panTro4.chr2B 235512837 0 + 247518478 C e hg19.chr2 231135112 0 + 243199373 C e calJac3.chr6 146742581 171 + 158406734 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=1152.000000 s mm10.chr1_GL456221_random 126883 4 + 206961 CAAC s rn5.chr9 92373739 4 + 121549591 CAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144744 4 - 10418462 AAAA i speTri2.JH393335 C 0 I 2 s otoGar3.GL873532 28831496 4 - 32117204 CAGG i otoGar3.GL873532 I 384 C 0 s felCat5.chrC1 212429819 4 + 221441202 AAAT i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42498255 4 + 51628933 AAAC i canFam3.chr25 C 0 C 0 s equCab2.chr6 17868622 4 + 84719076 gaat i equCab2.chr6 C 0 C 0 e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063245 166 + 106825570 I e nomLeu2.GL397366 3660814 0 + 6458163 C e gorGor3.chr2B 119466879 0 + 131632457 C e panTro4.chr2B 235512837 0 + 247518478 C e hg19.chr2 231135112 0 + 243199373 C e calJac3.chr6 146742581 171 + 158406734 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=10573.000000 s mm10.chr1_GL456221_random 126887 5 + 206961 -AATGT s rn5.chr9 92373743 5 + 121549591 -AATGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144750 5 - 10418462 -AAGAC i speTri2.JH393335 I 2 C 0 s hg19.chr2 231135112 5 + 243199373 -aAGAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512837 5 + 247518478 -aAGAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466879 5 + 131632457 -AAGAC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693892 5 + 135000294 -aAGAC i ponAbe2.chr2b N 0 C 0 s nomLeu2.GL397366 3660814 5 + 6458163 -aAGAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063411 5 + 106825570 -aAGAC i rheMac3.chr12 I 166 C 0 s calJac3.chr6 146742752 5 + 158406734 -aAGAC i calJac3.chr6 I 171 C 0 s otoGar3.GL873532 28831500 5 - 32117204 -AAGAC i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212429823 5 + 221441202 AAAGG- i felCat5.chrC1 C 0 I 144 s canFam3.chr25 42498259 5 + 51628933 AAAGG- i canFam3.chr25 C 0 I 5 s equCab2.chr6 17868626 5 + 84719076 aaagg- i equCab2.chr6 C 0 I 5 e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=19554.000000 s mm10.chr1_GL456221_random 126892 3 + 206961 CTA s rn5.chr9 92373748 3 + 121549591 TCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144755 3 - 10418462 CCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135117 3 + 243199373 CCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512842 3 + 247518478 CCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119466884 3 + 131632457 CCA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122693897 3 + 135000294 CCA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660819 3 + 6458163 CCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063416 3 + 106825570 CCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742757 3 + 158406734 CCA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28831505 3 - 32117204 CCA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42498269 3 + 51628933 CCA i canFam3.chr25 I 5 C 0 s equCab2.chr6 17868636 3 + 84719076 cca i equCab2.chr6 I 5 C 0 e ailMel1.GL192536.1 1054352 427 - 2169676 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429828 144 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=434842.000000 s mm10.chr1_GL456221_random 126895 91 + 206961 AGGCCCTCCCTGGATT-----CCCAGTTGTCAGTTCACTGGG--TTTAGATTCTACTAAGAGGGAG---GAAAGAAATGGCAATCCAAGCTTTGCTGTAG--G s rn5.chr9 92373751 90 + 121549591 AGGCTCTCCCTGGATT-----CCCAGTTGTCAGTTCACTGGG--CTTAGATTCTACTAGGA-GGAG---GAAAGACATGGCAATCCAAGCATTGCTATAA--G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144758 94 - 10418462 GGGCCCCTCCTGAACG-----CTTACTTCTCAGTTCAGTAGGTTTTTGGATTGTTTTACAA-GGAA---GAACGAAATGATAATCCAGATATTTTTGTAAGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135120 91 + 243199373 GGGCCCATCCTAGACT-----CCTAGTTCTCAGTTCGGTGGG-TTTTTGGTTCCCCTAGAA-GAAA---GAGAGGAATGATTATCCAAGCATCTGTATAA--A i hg19.chr2 C 0 I 2 s panTro4.chr2B 235512845 91 + 247518478 GGGCCCATCCTAGACT-----CCTAGTTCTCAGTTCAGTGGG-TTTTTGGTTCCCCTAGAA-GAAA---GAGAGGAATGATTATCCAAACATCTTTATAA--A i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119466887 91 + 131632457 GGGCCCATCCTAGACT-----CCTAGTTCTCAGTTCAGTGGG-TTTTTGGTTCCCCTAGAA-GAAA---GAGAGGAATGATTATCCAAACATCTGTATAA--A i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122693900 91 + 135000294 GGGCCCATCCTAGACT-----CCTAGTTCTCAGTTCAGTGGG-TTTTTGGTTCCTCTAGAA-GAAA---CAGACAAATGAGTATCCAAACATCTTTATAA--A i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3660822 91 + 6458163 GGGCCCATCCTAGACT-----CCTAGTTCTCAGTTCAGTGGG-TTTTTGGTTCCTCTAGAA-GAAA---GAGAGGAATGAGTATCCAAACATCTTTATAA--A i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94063419 91 + 106825570 GGGCCCATCCTAGACT-----CCTAGTTCTCAGTTCAGTGGG-TTTTTGATTCCTCTGGAA-GAAA---GAGAAGAATAAGTATCTAAACATCTTTATAA--A i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146742760 91 + 158406734 GGGCCCATCCTAGACT-----CCTAGTCCTCAGTTCAGTGAG-CTTTTGGTTCATCTAGAA-GGAC---GAGAGGAATGACTATCCAAACGTCTGTATAA--A i calJac3.chr6 C 0 I 2 s otoGar3.GL873532 28831508 96 - 32117204 GGGCCCCTCTGAGAGTACAAATCTACTTCTCAGGTCCGTAGA-TTTATAGTTCCTTTATGA-GGAG---GAGAGGAATGGTTATGAAAACACCTTTATAA--A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42498272 94 + 51628933 GGGTCCTTTCTGGACT-----CCTGCTTCTCAATTCAGTACG-TTTTTAGTCCTTTCAGAA-AGAAGAGAAGAAAAACAATGACCCAAACGTCTTTATAA--A i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1054779 87 - 2169676 AGGCCCATCCTCGACT-----CCCACTTCTCAATTCAGTAGG-TTTTTAGTCCCTTTAGAA--------GAGAAAAATGACAACCCAAACATCTTTATAA--A i ailMel1.GL192536.1 I 427 I 2 s equCab2.chr6 17868639 91 + 84719076 gggcccatcctggact-----cctacctctcagttcggtAAG-CCTTTAGTTCCTTTAGAA-GGAA---CAGAGAAATGATAACCTAAACATCTTTATAA--A i equCab2.chr6 C 0 I 2 e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429828 144 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115121 776 + 176633 I a score=3033.000000 s mm10.chr1_GL456221_random 126986 1 + 206961 C s rn5.chr9 92373841 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144852 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135213 1 + 243199373 C i hg19.chr2 I 2 C 0 s panTro4.chr2B 235512938 1 + 247518478 C i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119466980 1 + 131632457 C i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122693993 1 + 135000294 C i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3660915 1 + 6458163 C i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94063512 1 + 106825570 C i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146742853 1 + 158406734 C i calJac3.chr6 I 2 C 0 s micMur1.scaffold_3075 115897 1 + 176633 C i micMur1.scaffold_3075 I 776 I 57 s otoGar3.GL873532 28831604 1 - 32117204 T i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42498368 1 + 51628933 C i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1054868 1 - 2169676 C i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17868732 1 + 84719076 G i equCab2.chr6 I 2 C 0 e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429828 144 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=247569.000000 s mm10.chr1_GL456221_random 126987 54 + 206961 AAGGCCT----CTGCAGTGTGAATGGTCCTAAGGG-TTG-TAACTTCTATTTGTTA---TTTC s rn5.chr9 92373842 53 + 121549591 AAGGTCT----CT-CAGTGTGAATGGTCCTAAGGG-TTC-TACCTTCTGTTCATTA---TCTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144853 58 - 10418462 AAGCCTT----CTGCATTAGAAATTCTCCTAAGAC-TTGTTTACTTTTATTTATTAATTTCTA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135214 54 + 243199373 AAGCCTT----CTGTAGTATACATTGTCCTAAAAT-CTA-TAACTTTTATTTATTA---ATTT i hg19.chr2 C 0 I 3 s panTro4.chr2B 235512939 54 + 247518478 AAGCCTT----CTGTAGTATACATTGTCCTAAAAT-CTA-TAACTTTTATTTATTA---ATTT i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119466981 54 + 131632457 AAGCCTT----CTGTAGTATACATTGTCCTAAAAT-CTA-TAACTTTTATTTATTA---ATTT i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122693994 58 + 135000294 AAGCCTTCATACTATAGTATGAATTGTCCTAAAAT-CTA-TAACTTTTATTTATTA---ATTT i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3660916 54 + 6458163 AAGCCTT----CTGTAGTATACATTGTCCTAAAGT-CTA-TAACTTTTATTTATTA---GTTT i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94063513 54 + 106825570 AAGCCTT----CTGTAGTATAAATTGTCCTAAAAT-CTG-TAACTTTTATTTATTA---ATTT i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146742854 53 + 158406734 AAGCCTT----CTATGGTATAAATTGTCCTAAACT-CTG-TAACTTTTATTTCTTA---ATT- i calJac3.chr6 C 0 I 2 s otoGar3.GL873532 28831607 54 - 32117204 AAACCTT----CTGTAATATAAATTGTCCTAAGAT-TTG-TAACTTTTATTGATTA---ATTT i otoGar3.GL873532 I 2 I 3 s canFam3.chr25 42498369 52 + 51628933 AAGTCTT----CTGCAGTATGAATAATCCTAAAATGTCT-TAACTTTTATTTATTG---A--- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1054869 54 - 2169676 AAGTCTT----CTGCAGTATGAATAATCCTAAAAT-TTG-TAACTTTTATTTATTA---ATTT i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17868733 49 + 84719076 AAGCCTT----CTGCAATATT----ATCCTAAGAT-TTG-TAACTTCTGTTCATTT---ATG- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429828 144 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115898 57 + 176633 I a score=9555.000000 s mm10.chr1_GL456221_random 127041 1 + 206961 T s rn5.chr9 92373895 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144911 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135271 1 + 243199373 T i hg19.chr2 I 3 C 0 s panTro4.chr2B 235512996 1 + 247518478 T i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119467038 1 + 131632457 T i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122694055 1 + 135000294 T i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3660973 1 + 6458163 T i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94063570 1 + 106825570 T i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146742909 1 + 158406734 T i calJac3.chr6 I 2 C 0 s micMur1.scaffold_3075 115955 1 + 176633 T i micMur1.scaffold_3075 I 57 I 150 s otoGar3.GL873532 28831664 1 - 32117204 T i otoGar3.GL873532 I 3 C 0 s canFam3.chr25 42498421 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1054926 1 - 2169676 T i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17868782 1 + 84719076 T i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429828 144 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I a score=17402.000000 s mm10.chr1_GL456221_random 127042 2 + 206961 TT s rn5.chr9 92373896 2 + 121549591 TT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144912 2 - 10418462 TT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135272 2 + 243199373 TT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512997 2 + 247518478 TT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119467039 2 + 131632457 TT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122694056 2 + 135000294 TT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660974 2 + 6458163 TT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063571 2 + 106825570 TT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742910 2 + 158406734 TT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28831665 2 - 32117204 TT i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212429972 2 + 221441202 CT i felCat5.chrC1 I 144 I 2262 s canFam3.chr25 42498422 2 + 51628933 TT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1054927 2 - 2169676 TT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868783 2 + 84719076 TT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115956 150 + 176633 I a score=649065.000000 s mm10.chr1_GL456221_random 127044 117 + 206961 CCCCATTGCCACTTTCTGTCTTCTAGAAGGTGTGGGCACCAGGAAGAACATTCCTGCAAGA------AAACCCAGAAAGCAGAGTAGTAAGGAAACAGTGGCTGTTTACATGCTTTTGATATT s rn5.chr9 92373898 117 + 121549591 CCCTATTGTCATTTACTGTCTTCTATAAGCCATGGACACTGGGAGGAAAATTCCTGCAGGA------AAATCCAAGAAGAGGAGAAGTAAGGAAACAAAGATTGTTTACATGCTTTTGATATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4144914 116 - 10418462 CCTTATTATCTCTTGTTATTTTCTAGACACTGGGAATATTGGAAACCAAGCTACTTTAGGA------AAACCCAAGAGCAAAAGAAGTAAGAATA-AATGAGACTTTACTTGCTTCTAATGTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135274 116 + 243199373 CCTCACCACCACTTGTTATTTTCCAGATACTGTGGATATTGCAAACAACTCCACTTTGGGA------AAACCCAAGAGGAAAAGAAGTAAGAATA-AATAAGAATTTATTTGCTTTTGGTATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235512999 116 + 247518478 CCTCACCACCACTTGTTATTTTCCAGATACTGTGGATATTGCAAACAACTCTACTTTGGGA------AAACCCAAGAGGAAAAGAAGTAAGAATA-AATAAGAATTCACTTGCTTTTGGTATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119467041 116 + 131632457 CCTCACCACCACTTGTTATTTTCCAGATACTGTGGATATTGCAAACAACTCCACTTTGGGA------AAACCCAAGAGGAAAAGAAGTAAGAATA-AATAAGAATTTACTTGCTTTTGGTATT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122694058 116 + 135000294 CCTCACCACCACTTGTTATTTTCTAGATACTGTGGATATTGCAAACAACTCCACTTTGGGA------AAACCCAAGAGGAAAAGAAGTAAGAATA-AATAAGAATTTACTTGCTTTTGATGTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3660976 116 + 6458163 CCTCACCACCACTTGTTATTTTCTAGATACTGTGGATATTGGAAACAACTCTACTTTGGGA------AAACCCAAGAGGAAAAGAAGTAAGAATA-AATAAGAATTTACTTGCTTTTGGTGTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063573 116 + 106825570 CCTCACCACCACTTGTTATTTTCTAGATACTGTGGGTATTGGAAACAACTCTACTTTGGGA------AAACCCAAGAGGAAAAAAAGTAAGACTA-AATAAGAATTTACTTGCTTTTAGTGTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146742912 122 + 158406734 CCTCACTACTAGTTGTTATTTTCTAGATACTGTGGATACTGGAAGCAACTCTGCTTTAGGGAGTACCAAACCCAAGAGGAAAAGAAGTAAGAATA-AATACAAATGTACTTGCTTTTGGTGTT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28831667 116 - 32117204 CCTTACTATCACCTGTTATTTTCTAGATACTGTGATTACCGGAAATAACTCTACTTTGGGA------CAACCCAGGAGGAAAAGAAGTAAGGATA-AATAATAATTTACTTTCTTTTGATGTT i otoGar3.GL873532 C 0 I 2893 s canFam3.chr25 42498424 116 + 51628933 CCTCACCCTCACCTGTTATTCTCCAGATACTGCAGATCTTGGAAACAACTCTTCTTCGGGA------AAACTCAAGAGGAAGAGAAGTAAGAGTG-CATAAGATTTTACTTGCTTTTGATACT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1054929 116 - 2169676 CCTCACCCTCACCTGTTATTCTCTAGACACTGTGGATCTTGGAAACAACTCTGCTTCGGGA------AAACGCAAGAGGAAGAGAAGTAAGAGCA-CATAAGATTTTACTTGCTTTTGATGTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868785 116 + 84719076 CCTCACCTTTACCTGTCATTTTCTAGATACTGTGGATATTGGAAACAACTCTAGTTTGGGA------AAACCCAAGAGGAAAAGAAGTAAGAGTG-CATAAGATTTTACTTGCTTTTGGTGTT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115956 150 + 176633 I a score=35663.000000 s mm10.chr1_GL456221_random 127161 12 + 206961 CCTAATA-----ACTAA s rn5.chr9 92374015 16 + 121549591 CCCGATAA-GTTATTTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4145030 16 - 10418462 GCAGATGA-GTCTTTAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135390 16 + 243199373 ACAAATAC-GTTTTTAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235513115 16 + 247518478 ACAAATAC-GTTTTTAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119467157 16 + 131632457 ACAAATAC-GTTTTTAA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122694174 16 + 135000294 ACCAATGC-ATTTTTAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3661092 16 + 6458163 ACAAATAC-GTTTTTAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063689 16 + 106825570 ACAAATAT-GTTTTTAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146743034 16 + 158406734 GTAAACAT-GTTTTTAA i calJac3.chr6 C 0 C 0 s canFam3.chr25 42498540 16 + 51628933 AAATAGGA-ATTTTTAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1055045 17 - 2169676 AAAAATGAGGTTTTTAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868901 17 + 84719076 AAAAATAAGATTTTTAA i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28831783 2893 - 32117204 I e pteVam1.scaffold_9232 38562 1778 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115956 150 + 176633 I a score=8281.000000 s mm10.chr1_GL456221_random 127173 1 + 206961 T s rn5.chr9 92374031 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4145046 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135406 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235513131 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119467173 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122694190 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3661108 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063705 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146743050 1 + 158406734 T i calJac3.chr6 C 0 C 0 s canFam3.chr25 42498556 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1055062 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868918 1 + 84719076 T i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_9232 40340 1 + 60856 T i pteVam1.scaffold_9232 I 1778 C 0 e otoGar3.GL873532 28831783 2893 - 32117204 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH566347 1803000 0 + 1805508 I e micMur1.scaffold_3075 115956 150 + 176633 I a score=5650.000000 s mm10.chr1_GL456221_random 127174 3 + 206961 CC-------C s rn5.chr9 92374032 3 + 121549591 CC-------C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4145047 10 - 10418462 GCTTATTATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135407 3 + 243199373 GC-------C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235513132 3 + 247518478 GC-------C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119467174 3 + 131632457 GC-------C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122694191 3 + 135000294 GC-------C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3661109 3 + 6458163 GC-------C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063706 3 + 106825570 GC-------C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146743051 3 + 158406734 GC-------C i calJac3.chr6 C 0 C 0 s canFam3.chr25 42498557 3 + 51628933 GC-------T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1055063 3 - 2169676 GC-------T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868919 3 + 84719076 GC-------C i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_9232 40341 3 + 60856 TT-------T i pteVam1.scaffold_9232 C 0 I 1747 s dasNov3.JH581855 2051 3 - 513109 AC-------C i dasNov3.JH581855 T 95202 C 0 e otoGar3.GL873532 28831783 2893 - 32117204 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e micMur1.scaffold_3075 115956 150 + 176633 I a score=14200.000000 s mm10.chr1_GL456221_random 127177 3 + 206961 AGA s rn5.chr9 92374035 3 + 121549591 AGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4145057 3 - 10418462 ATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135410 3 + 243199373 AGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235513135 3 + 247518478 AGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119467177 3 + 131632457 AGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122694194 3 + 135000294 AGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3661112 3 + 6458163 AGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063709 3 + 106825570 AGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146743054 3 + 158406734 AGA i calJac3.chr6 C 0 C 0 s canFam3.chr25 42498560 3 + 51628933 AGC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1055066 3 - 2169676 AGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868922 3 + 84719076 AGA i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 2054 3 - 513109 AAC i dasNov3.JH581855 C 0 C 0 e otoGar3.GL873532 28831783 2893 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e micMur1.scaffold_3075 115956 150 + 176633 I a score=3860.000000 s mm10.chr1_GL456221_random 127180 1 + 206961 A s rn5.chr9 92374038 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4145060 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135413 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235513138 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119467180 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122694197 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3661115 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94063712 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146743057 1 + 158406734 G i calJac3.chr6 C 0 C 0 s micMur1.scaffold_3075 116106 1 + 176633 a i micMur1.scaffold_3075 I 150 I 336 s canFam3.chr25 42498563 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1055069 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868925 1 + 84719076 G i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 2057 1 - 513109 G i dasNov3.JH581855 C 0 C 0 e otoGar3.GL873532 28831783 2893 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I a score=14976.000000 s mm10.chr1_GL456221_random 127181 2 + 206961 TT s rn5.chr9 92374039 2 + 121549591 TT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4145061 2 - 10418462 TC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135414 2 + 243199373 TT i hg19.chr2 C 0 I 17 s panTro4.chr2B 235513139 2 + 247518478 TT i panTro4.chr2B C 0 I 17 s gorGor3.chr2B 119467181 2 + 131632457 TT i gorGor3.chr2B C 0 I 17 s ponAbe2.chr2b 122694198 2 + 135000294 TT i ponAbe2.chr2b C 0 I 17 s nomLeu2.GL397366 3661116 2 + 6458163 TT i nomLeu2.GL397366 C 0 I 17 s rheMac3.chr12 94063713 2 + 106825570 TT i rheMac3.chr12 C 0 I 11098 s calJac3.chr6 146743058 2 + 158406734 TT i calJac3.chr6 C 0 I 17 s canFam3.chr25 42498564 2 + 51628933 TT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1055070 2 - 2169676 TT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17868926 2 + 84719076 TT i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 2058 2 - 513109 TT i dasNov3.JH581855 C 0 I 2 e otoGar3.GL873532 28831783 2893 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e micMur1.scaffold_3075 116107 336 + 176633 I a score=80735.000000 s mm10.chr1_GL456221_random 127183 46 + 206961 ACTAT---TGTTATTGTG----------TATGATAAT--AGAGT-----AGACTT--TGGTGACCTTG--------------------------- s rn5.chr9 92374041 46 + 121549591 ACTAT---TGTTATTATG----------TATGATAAT--GGGGT-----TGACTT--TGGTAACCTCC--------------------------- i rn5.chr9 C 0 I 315 s speTri2.JH393335 4145063 59 - 10418462 ACCAT---TATTACCATGCCACggtagacagaatgat--gggttcccaaagatgc--ctgtgactg----------------------------- i speTri2.JH393335 C 0 I 16 s hg19.chr2 231135433 51 + 243199373 ACTATTTCTGTTATTATT----------TGTAATACt--gtggt-----agacagaaggatgacctcc--------------------------- i hg19.chr2 I 17 I 33 s panTro4.chr2B 235513158 51 + 247518478 ACTATTTCTGTTATTATT----------TGTAATACt--gtggt-----agacagaaggatgacctcc--------------------------- i panTro4.chr2B I 17 I 33 s gorGor3.chr2B 119467200 51 + 131632457 ACTATTTCTGTTATTATT----------TGTAATACt--gtggt-----agacagaaggatgacctcc--------------------------- i gorGor3.chr2B I 17 I 33 s ponAbe2.chr2b 122694217 51 + 135000294 ACTATTTCTGTTATTATT----------TGCAATACt--gtggt-----agacagaatgatggccacc--------------------------- i ponAbe2.chr2b I 17 I 35 s nomLeu2.GL397366 3661135 51 + 6458163 ACTATTTCTGTTATTATT----------TGTAATACt--gtggt-----agacagaaggatgacctcc--------------------------- i nomLeu2.GL397366 I 17 I 33 s calJac3.chr6 146743077 51 + 158406734 ACTATTTCTGTTATTATT----------TGCAATACt--gtggt-----agatagaaggatggcctcc--------------------------- i calJac3.chr6 I 17 I 33 s canFam3.chr25 42498566 48 + 51628933 -ACAT---TGTTACTATT----------TACAATAATAAGTGAT-----A-ATAATatgatgtctgcc--------------------------- i canFam3.chr25 C 0 I 27 s ailMel1.GL192536.1 1055072 48 - 2169676 -GCAT---TACTACTATT----------TACAATAATAAGTGAT-----A-ATAATatgatgtctgcc--------------------------- i ailMel1.GL192536.1 C 0 I 27 s equCab2.chr6 17868928 48 + 84719076 -TCAT---TATCATTATC----------TACAATAATAAGTGAT-----A-ACAATatgatggcctct--------------------------- i equCab2.chr6 C 0 I 27 s dasNov3.JH581855 2062 70 - 513109 ---AT---TATTATTATT----------TACTATATt--gt--t-----aggcatgacgatggccatccaaaggcatccatgtcctaatccctga i dasNov3.JH581855 I 2 C 0 e otoGar3.GL873532 28831783 2893 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e micMur1.scaffold_3075 116107 336 + 176633 I a score=179685.000000 s mm10.chr1_GL456221_random 127229 59 + 206961 --------------AACC---------TGTTATTTT-A-ATGACAAGGACACTCTCTACATGAGTGATTAAGCTAGAAACCTTG s rn5.chr9 92374402 57 + 121549591 --------------AACC---------tgttatctt-a-atgacaaagaca--ctctacaagaaaccttaagctagaaaccttg i rn5.chr9 I 315 C 0 s speTri2.JH393335 4145138 39 - 10418462 --------------aatc---------tgttttctt-c-cagatagag-------------------ttaagctagggacctg- i speTri2.JH393335 I 16 C 0 s hg19.chr2 231135517 59 + 243199373 --------------aatc---------tgctatctt-acatgacaaaaggga-ctttacagatacaattaagctagagaccttg i hg19.chr2 I 33 I 167 s panTro4.chr2B 235513242 59 + 247518478 --------------aatc---------tgctatctt-acatgacaaaaggga-ctttacagatacaattaagctagagaccttg i panTro4.chr2B I 33 I 4 s gorGor3.chr2B 119467284 59 + 131632457 --------------aatc---------tgctatctt-acatgacaaaaggga-ctttacagatacaattaagctagagaccttg i gorGor3.chr2B I 33 I 4 s ponAbe2.chr2b 122694303 59 + 135000294 --------------aatc---------tgctatctt-acatggcaaacggga-ctttacagatacaattaagttagagaccttg i ponAbe2.chr2b I 35 I 4 s nomLeu2.GL397366 3661219 59 + 6458163 --------------aatc---------tgctatctt-acatgacaaaaggga-ctttacagatacaattaagctagagaccttg i nomLeu2.GL397366 I 33 I 4 s calJac3.chr6 146743161 58 + 158406734 --------------aacc---------tgctatctt-acatggcaaaaggga-ctttacagatacaactaagctaggaacctt- i calJac3.chr6 I 33 I 5 s canFam3.chr25 42498641 68 + 51628933 --------------aatttgtattctctattatcttaacatggcaaaagaga-ttttacagaaataattaa-gtagggatgttg i canFam3.chr25 I 27 C 0 s ailMel1.GL192536.1 1055147 67 - 2169676 --------------aacttgtgttatctattatctt-atgtggc-aaagaga-ttttacagatataattaaggtagggaccttg i ailMel1.GL192536.1 I 27 C 0 s equCab2.chr6 17869003 66 + 84719076 --------------aacctgtggtg--cgttatctt-acttgggaaaaggga-ttttacagatataattaagccagggaccttg i equCab2.chr6 I 27 C 0 s dasNov3.JH581855 2132 73 - 513109 aacctgaaaactctaagc---------tattatgtt-acatggcaaaaggga-ctttgcagaagtgattaggttaaggactttg i dasNov3.JH581855 C 0 C 0 e otoGar3.GL873532 28831783 2893 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e micMur1.scaffold_3075 116107 336 + 176633 I a score=-1924.000000 s mm10.chr1_GL456221_random 127288 2 + 206961 -GC s rn5.chr9 92374459 2 + 121549591 -gt i rn5.chr9 C 0 C 0 s canFam3.chr25 42498709 2 + 51628933 -ga i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1055214 2 - 2169676 -ga i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17869069 2 + 84719076 -aa i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 2205 2 - 513109 ag- i dasNov3.JH581855 C 0 C 0 e ponAbe2.chr2b 122694362 4 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4145177 0 - 10418462 C e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e nomLeu2.GL397366 3661278 4 + 6458163 I e gorGor3.chr2B 119467343 4 + 131632457 I e panTro4.chr2B 235513301 4 + 247518478 I e hg19.chr2 231135576 167 + 243199373 I e calJac3.chr6 146743219 5 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e micMur1.scaffold_3075 116107 336 + 176633 I a score=-9751.000000 s mm10.chr1_GL456221_random 127290 6 + 206961 GGGAAG--- s rn5.chr9 92374461 6 + 121549591 gggttg--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4145177 6 - 10418462 gagagg--- i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235513305 2 + 247518478 ----gg--- i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119467347 2 + 131632457 ----gg--- i gorGor3.chr2B I 4 C 0 s ponAbe2.chr2b 122694366 2 + 135000294 ----gg--- i ponAbe2.chr2b I 4 C 0 s nomLeu2.GL397366 3661282 2 + 6458163 ----gg--- i nomLeu2.GL397366 I 4 C 0 s calJac3.chr6 146743224 2 + 158406734 ----gt--- i calJac3.chr6 I 5 C 0 s canFam3.chr25 42498711 3 + 51628933 ---agg--- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1055216 3 - 2169676 ---aga--- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17869071 3 + 84719076 ---agg--- i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 2207 6 - 513109 ---aggaag i dasNov3.JH581855 C 0 I 7913 e otoGar3.GL873532 28831783 2893 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e hg19.chr2 231135576 167 + 243199373 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e micMur1.scaffold_3075 116107 336 + 176633 I a score=-16049.000000 s mm10.chr1_GL456221_random 127296 45 + 206961 TATGATTGTTTTTGACCATTGGTGTAGGGGTGACTAAT-------C--------------------------------------------------------------------------------------TGATTT s rn5.chr9 92374467 45 + 121549591 ggggaatgtttttgaccattgttgtatgaggaactaat-------c--------------------------------------------------------------------------------------tgattt i rn5.chr9 C 0 C 0 s speTri2.JH393335 4145183 41 - 10418462 gagaaactatttgaatcatc----tgggtgggcccaat-------c--------------------------------------------------------------------------------------taattt i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235513307 34 + 247518478 ggagatgatcctgggttatg-----gggtgggtgcaat-------c-------------------------------------------------------------------------------------------- i panTro4.chr2B C 0 I 20 s gorGor3.chr2B 119467349 40 + 131632457 ggagatgatcctgggttatg-----gggtgggtgccat-------c--------------------------------------------------------------------------------------taatct i gorGor3.chr2B C 0 I 121 s ponAbe2.chr2b 122694368 76 + 135000294 ggagatgatcctgggttatg-----tggtgggcccaat-------c------------------------------------taatcttgtaggctttaa------agagtggagaacttttcc--------tggctg i ponAbe2.chr2b C 0 I 85 s nomLeu2.GL397366 3661284 126 + 6458163 ggagatgatcctgggttatg-----gggtgggcgcaat-------ctaatcttataggccttaaagagtggagaacttttcctggctgtggagaaaggaaaatgtgactatggaagaatcatcagaaatatgtaatgt i nomLeu2.GL397366 C 0 I 35 s calJac3.chr6 146743226 41 + 158406734 ggagattattctggattatg----taggtggacccaat-------c--------------------------------------------------------------------------------------taatct i calJac3.chr6 C 0 C 0 s canFam3.chr25 42498714 34 + 51628933 gaagattattctggattagc----tgggtacacccaat---------------------------------------------------------------------------------------------------- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1055219 34 - 2169676 ggagattgttctggattatc----tgggtacacccaat---------------------------------------------------------------------------------------------------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17869074 40 + 84719076 ggagattatcctgga-tatc----tgggtgtactcaacataatca--------------------------------------------------------------------------------------------- i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28831783 2893 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e hg19.chr2 231135576 167 + 243199373 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I a score=13507.000000 s mm10.chr1_GL456221_random 127341 7 + 206961 TATGGGT s rn5.chr9 92374512 7 + 121549591 tatgggt i rn5.chr9 C 0 C 0 s speTri2.JH393335 4145224 7 - 10418462 tatcaac i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135743 7 + 243199373 tatgggt i hg19.chr2 I 167 I 18 s panTro4.chr2B 235513361 7 + 247518478 agtggaa i panTro4.chr2B I 20 I 18 s gorGor3.chr2B 119467510 7 + 131632457 tatgggt i gorGor3.chr2B I 121 I 18 s ponAbe2.chr2b 122694529 7 + 135000294 tgtgggt i ponAbe2.chr2b I 85 I 18 s nomLeu2.GL397366 3661445 7 + 6458163 tatgggt i nomLeu2.GL397366 I 35 I 18 s calJac3.chr6 146743267 7 + 158406734 tgtaggc i calJac3.chr6 C 0 I 139 s equCab2.chr6 17869114 7 + 84719076 aatgggc i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498748 0 + 51628933 C e ailMel1.GL192536.1 1055253 0 - 2169676 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I a score=600.000000 s mm10.chr1_GL456221_random 127348 1 + 206961 C s rn5.chr9 92374519 1 + 121549591 c i rn5.chr9 C 0 I 201 s speTri2.JH393335 4145231 1 - 10418462 c i speTri2.JH393335 C 0 I 2 s equCab2.chr6 17869121 1 + 84719076 c i equCab2.chr6 C 0 C 0 e ponAbe2.chr2b 122694536 18 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498748 0 + 51628933 C e ailMel1.GL192536.1 1055253 0 - 2169676 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e nomLeu2.GL397366 3661452 18 + 6458163 I e gorGor3.chr2B 119467517 18 + 131632457 I e panTro4.chr2B 235513368 18 + 247518478 I e hg19.chr2 231135750 18 + 243199373 I e calJac3.chr6 146743274 139 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I a score=1963.000000 s mm10.chr1_GL456221_random 127349 12 + 206961 ag----------------------------------------------------------gtaaggaaat s speTri2.JH393335 4145234 12 - 10418462 ag----------------------------------------------------------aaagtggaga i speTri2.JH393335 I 2 C 0 s hg19.chr2 231135768 12 + 243199373 ag----------------------------------------------------------acaaggaaat i hg19.chr2 I 18 C 0 s panTro4.chr2B 235513386 12 + 247518478 ag----------------------------------------------------------aaaggaagat i panTro4.chr2B I 18 I 23 s gorGor3.chr2B 119467535 12 + 131632457 ag----------------------------------------------------------acaaggaaat i gorGor3.chr2B I 18 C 0 s ponAbe2.chr2b 122694554 12 + 135000294 aa----------------------------------------------------------acaaggaaat i ponAbe2.chr2b I 18 C 0 s nomLeu2.GL397366 3661470 12 + 6458163 ag----------------------------------------------------------acaaggaaat i nomLeu2.GL397366 I 18 C 0 s calJac3.chr6 146743413 12 + 158406734 ag----------------------------------------------------------acaaggaaat i calJac3.chr6 I 139 C 0 s canFam3.chr25 42498748 10 + 51628933 ------------------------------------------------------------ataatggagc i canFam3.chr25 C 0 I 11447 s ailMel1.GL192536.1 1055253 10 - 2169676 ------------------------------------------------------------ataatggaat i ailMel1.GL192536.1 C 0 I 54 s equCab2.chr6 17869122 68 + 84719076 --ttaaaaagtggagaactgttcctggctgtggagagaggggaagtgactgtggaagataataacagaga i equCab2.chr6 C 0 I 79 e otoGar3.GL873532 28831783 2893 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92374520 201 + 121549591 I a score=181585.000000 s mm10.chr1_GL456221_random 127361 168 + 206961 aggttgtc----------tcctagagac--------------------------------------------------------------------------c-----------------ccaggaacaggtgaa---------------g----------gg----tggtgg--------------------------------------------------------------acagctgga---------------------------------------------------------cttcagccac----atcagacttctaactgacataatgc-----tta---cataaacttgtgctgttttaagctactgaactttgggta--acttgccctgagaacaata-aagactggtgcaTATTTTGG s speTri2.JH393335 4145246 259 - 10418462 ggctttcc----------tgagagaggg--------------------------------------------------------------------------a-----------------ggtgtgatagtggag---------------g----------gg----tggtgggaagggtgcagtgttgctagtttggaggtagaagaagggaccaaagcatgtgattggcctcagaagctggaaaactcaggaa-------------tgtagattc---------------------tccctacagccaccagaaagagatttctaactcatataacta-----tcagatcataattctgtgttgttttaagtccctaa---ttgggtggtaattgttatggaagcaatt-gagagcaaatCAGCTTTTGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231135780 162 + 243199373 agcttgtc----------ctttccagct--------------------------------------------------------------------------c-----------------ccagaaa----ggaa---------------t----------ta----ctttag--------------------------------------------------------------ccagtgaga---------------------------------------------------------cccatgtcac---------acttctcactgacataactg-----gaagaaaatacatttgtgttgttttaaaccactaaattggtggta--atttgttatggcagcaatt-aagagtaatacagattttgg i hg19.chr2 C 0 I 12683 s panTro4.chr2B 235513421 246 + 247518478 aatatgtcatgttgcaggctttgaagatggaagaagggaccaaggaatatgggtgacctctgggagctgaaaagacaaggaaatagcttgtccttcccacctc-----------------ccagaaa----ggaa---------------t----------ta----ctttag--------------------------------------------------------------ccagtgaga---------------------------------------------------------cccatgtcac---------acttctcactgacctaactg-----gaagaaaatacatttgtgttgttttcaaccactaaattggtggta--atttgttatggcagcaatt-aagagtaatacagattttgg i panTro4.chr2B I 23 I 13042 s gorGor3.chr2B 119467547 167 + 131632457 agcttgtc----------ctttccagct--------------------------------------------------------------------------c-----------------ccagaaa----ggaa---------------t----------ta----ctttag--------------------------------------------------------------ccagtgaga---------------------------------------------------------cccatgtcac---------acttctcactgacataactgttttttgtgtcagtggttttgtgttgttttaaaccactaaattggtggta--atttgttatggcagcaatt-aagagtaatacaGGTTttgg i gorGor3.chr2B C 0 I 15699 s ponAbe2.chr2b 122694566 177 + 135000294 agtttgtc----------ctttccagcc--------------------------------------------------------------------------c-----------------ccagaaa----ggaatgaaggcctacacctt----------ga----ctttaa--------------------------------------------------------------gcagtaaga---------------------------------------------------------cccgtgtcac---------acttctcactgacgtaactg-----gaagataatatatttgtgttgttttaaaccactaaatctgtggta--attcgttatggcaggaatt-aagagtaatacagattttag i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3661482 161 + 6458163 agcttgtc----------ctttccagcc--------------------------------------------------------------------------c-----------------ccagaaa----ggaa---------------t----------ta----ctttag--------------------------------------------------------------ccagtgaga---------------------------------------------------------tccatgtcac---------acttctcactgacataactg-----gaagaaaatacatttgtgttgttttaaaccac-aaattggtggta--atttgttatggcagcaatt-aagagtaatacaGATTtttg i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146743425 162 + 158406734 aggttgtc----------ctttccagcc--------------------------------------------------------------------------c-----------------gcagaaa----ggat---------------t----------ta----ctttgg--------------------------------------------------------------ccagtgaga---------------------------------------------------------cccatgtcac---------atttctcactgacataactg-----aaaaaaaatacatttatgttgctttaaatgactaaatttgtggta--atttgttatggcagcaatt-aagaataatataGATTttgg i calJac3.chr6 C 0 I 14076 s ailMel1.GL192536.1 1055317 249 - 2169676 agatacca----------tattgctggc--------------------------------------------------------------------------tggaggggcaggaagagggaggaaa----ggaa---------------ccaggaatatggaagacctctgg--------------------------------------------------------------aagctgggaaagtcaaggaaatgtattctactgtatagcttctagaaaggaatgaaggcctattgacccttgtcag---------acttctagtcaacataactg-----tgag--aataaatttatgttgttttaagccactacatttatagtc--atttgttatggcaacaacagaagaGCAGCACAgattttgg i ailMel1.GL192536.1 I 54 I 8652 s equCab2.chr6 17869269 183 + 84719076 agattctc----------cttcatagcc--------------------------------------------------------------------------t-----------------gaagaaa----ggaa---------------t----------gaagacctactg--------------------------------------------------------------acac-----------------------cttcattttagc--ccagag----------------tgacccttgtcag---------acttctgaccaacgaaactg-----taagataataaatttgcattgttttaagccacaaaatttgtgatc--acttgttatggcagcaataggagagtaatatagattttgg i equCab2.chr6 I 79 C 0 e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92374520 201 + 121549591 I a score=1776.000000 s mm10.chr1_GL456221_random 127529 34 + 206961 AATAGTCAGGAACTGCATAACCGTGGC--CATGACA s speTri2.JH393335 4145505 33 - 10418462 TTCAGACCGGCACTGTATA---GTGGCATTACTACA i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122694743 28 + 135000294 --tagttggcagtggggt----gtggc--tatcaca i ponAbe2.chr2b C 0 I 10244 s nomLeu2.GL397366 3661643 28 + 6458163 --tacttagaagtagggt----gtggc--tataaca i nomLeu2.GL397366 C 0 I 5304 s equCab2.chr6 17869452 27 + 84719076 --ttatcagaagtaggat----gcagc--tatagc- i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1055566 8652 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92374520 201 + 121549591 I a score=964.000000 s mm10.chr1_GL456221_random 127563 25 + 206961 ATGACATCCCACATATCTGAGTGTG s speTri2.JH393335 4145538 22 - 10418462 CTAGCAGACCACAGATGTG---GTG i speTri2.JH393335 C 0 C 0 s equCab2.chr6 17869479 22 + 84719076 ---acattcctaaaatttgaaagtg i equCab2.chr6 C 0 I 1900 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1055566 8652 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e nomLeu2.GL397366 3661671 5304 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92374520 201 + 121549591 I a score=1378.000000 s mm10.chr1_GL456221_random 127588 180 + 206961 TCCTCATAAGATGGTATTTCTCTATAGGGTTTCA-----------------------------------------------AAATCACCTACTGACACATTTCTCAGAACATA-CCCCACTGGTAAGCAATGGATGAGTTTGC-TGAAAGTAGCATGCAGTTTCAGCATGTTCTTAAACATTCAGAAGTAGCTTTGAAA---------TTACCCAATGAGGAGAGACT-GAAGATTTGT s speTri2.JH393335 4145560 224 - 10418462 GTCCTGCAAGACTGCATCACCTAGTGAAGTTGTAGCTCTCTTGATTGGTGTAAGTACATTCTGTGACGTTTGCGTAGTGACAAACCACCTGC-AACACTTTTCTCAGAATGTGTCTCCACCGTTAAGTAATGTGTGACTCtacttggaagtggggtgcaaccgtaac--------------tcagaagttatgtggaagtgagtggatttaggtagtgagtagagaatggaagggttgt i speTri2.JH393335 C 0 I 13939 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1055566 8652 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5304 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92374520 201 + 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 127768 804 + 206961 TTGTCATTGCTGTATTTTATTATATTATATTTCATTTTAtttctgagactatctctcactgtgtagtcctggcaggtctggagtctgctttgtagaccatggtagcctggaacccacagagatctgcttgcctcttgtttcctgaatagtgggattagaggcatgtttcatccagcctttgggacctttgaggaggaatttcaaatactaatgtggaaaaggcaTGGTGTGCTGTGACGGGATTTGAAAGACTCAGTGAGGACTCAGCAGGAAGTGAAGAGCATTCTGGAGAAAACCTATGTTTCTTCAGTCTACACCCTTCTATTTGAACATATGACCATAAAGGAGGTTTCAGTGTCTTTGCAATTCTTATTTTACATTAAATGTATAGTGGAAAGCACAAATCCTAAGCACAGCCTTTGAAGGATCCTGCTAATTGTATGTCTTCACAATAAAATCTTGTGGAGACACAGAACATGACCTTGAAGCTGACAAGATTTTCTGTGCCTTTCGTTGCCCCTTATTCATCAAGGCAGACACTTATTGTCCAAGGATACttagtttaggttgtttttaagtgctttatgagtaagatttcccagcatgttctttagtgtaaaggttgctttctccaaagaatgattctgctgtgaacttttgttgaagaatgcagcggcagttggctcctttttattgctatgtagtctactttgtctgagtaccccaatttttttgtatgctctccaaatgctagatcctcaacattcccactttgggacatgacaaaggtgttaggagtgccca e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1055566 8652 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4145784 13939 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5304 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92374520 201 + 121549591 I a score=17057.000000 s mm10.chr1_GL456221_random 128572 239 + 206961 tggagacatctctctgtggctctgtgctttcaaattcttacagaaacatctaggggtgacatgctggtacatagggtagatTTTTTCTTGTTCCTCTGCCAAGATCCACAAAGACTATGATGAGGACCAAGCCAGGAAGATGCTGCACACACAGGCCTATGTGGGGACTAAAGAGGAGTAAACAGGAATGTCCCTGTTTTACAAGGCAATGCTGGCAAATGGACCTTTTCCTGCTCCGT s rn5.chr9 92374721 239 + 121549591 TGAAGAGATCTTTTTGTGGCTCTGTGCTTTCAAATTCTTACAGAAACATCTAGGCGTGACATGCTGGTATACAGGGTGCATTTCTTCTTATCCCTCTGCTAGGATCCACAAAGATTGTGGTGTGGAGCAAGTCAGGGAGAAGTTGCACACACAGGTCTATGTGGGGACTGATGAGGACTGTACAGGAATGTCCCTGTCTTACAAGGCAATGGTGGCAAATGGGCCCTTCCCTGCGCTAT i rn5.chr9 I 201 I 273 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1055566 8652 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4145784 13939 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5304 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I a score=19551.000000 s mm10.chr1_GL456221_random 128811 310 + 206961 TTGCTAGCTGTGGGTCCTGCATTCTATCCATTCTCTGACCATGGTTTTAACAGAGTGGCATCAGCTTAGCCGTCTCAGTGGGGCAGAGCCCACCAGAGTGAGGGTCTGGCAAT----AAAGGTGGGTGTCATCAAAGCTACTCTGGGGCAACCCATACCTCCTAAGTGAGAGGTATACCCTCAGGTGCCTGAGGTTCTGCTCTGATATCATGCCATGTCATTCCAGAGGCTGCACCCTCACCtgtgggcttatatttttcaaaacctatgttcataagggttcttaaacactccaacatttcttacagcccact s rn5.chr9 92375233 301 + 121549591 TTACTAACTGTGGGTCCTCCATTCTATCCATTCTCTGACCATGTCCTTAACTGAGTGGCATCA---------CCTCAGTGAGACAGAGCCTACCAGAGTGAGGGTCTGGCAATTCTGAAAGGCGGGTGTCATCAAAGCTACCCTTATC---CCTAGACCTCCTAAGTGTGAGGTATCACCTCAAGTGTTTG-GGTTCTGCTCTTATACCCTGCCATGTCCTTCCAGAGGCTGCACCCTCACCtgtaggcttatatttttcaaaacctactttcataagggttcttaaatgctccaacctcccttatagTGCCCT i rn5.chr9 I 273 I 7 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1055566 8652 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4145784 13939 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5304 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 129121 570 + 206961 gaacaaaggtaggggaggaagagaagttaataggagcagggggacctggacttgtttagaagtagttctttggggagactgcagtctttgttgtcagcagtccagtccactagcagaacatcaaacatggatcggcagcaaaggctcgatccagaagaaaccacgagtctctgctggtcaatctgcaggaggctgcagaaggcgtcagaaaccaccagaatatcatgagaagttctttggtgcatttttctctatgaaatcactttgtgacaagtgaagatcgacaaggaaagcaaggctaaccaatgcaagagcgttatccactgtctgttgggttatacttatatactttccaaatatcatgtgacctctcaaggatctgctccagtaaaacatcacatgccccttcttctcaagacagcgtccagaaaaacaccatatgtctattctctgcaaagcatcctctcacatgtctgcttcaacaaaacatcctctcagaagagagcttccagaaaaacatgacatcacacaactgagtctccaaagaaatcacaaatttccacttcaCAT e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1055566 8652 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4145784 13939 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5304 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=2485.000000 s mm10.chr1_GL456221_random 129691 78 + 206961 ATCTTTCATTCAGACCAT-TCCTTTTCTCACCCAG---TTCCAGGCCATCAGGGCCTGA---AAGTAAGGCAAA-GAATTTCCATA s speTri2.JH393335 4159723 85 - 10418462 atctttttttctaatcatctccttttctcaccaagaccttccat-ccacaagggtctgatacaagcagggcaaaagaattttTAGG i speTri2.JH393335 I 13939 C 0 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1055566 8652 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5304 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=-1881.000000 s mm10.chr1_GL456221_random 129769 35 + 206961 GAAGG-AACCAGAATTAGACTGGAAGCCC-----------------TGGATAC s speTri2.JH393335 4159808 53 - 10418462 CAATGTAACTGGAATTAAACCAGACTCCCCTGGGCACTCTGAAAGCTGTATAC i speTri2.JH393335 C 0 I 32 s ailMel1.GL192536.1 1064218 31 - 2169676 GAAAG-AACAAGGCATCATCTCCAAGAGC-----------------TGG---- i ailMel1.GL192536.1 I 8652 C 0 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3661671 5304 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=39300.000000 s mm10.chr1_GL456221_random 129804 344 + 206961 CAGAATAGAAGCCTGAGTTTCAGAG-TAGGTCTATGTGTCACCTGTAG---CTCCCTCCCT-ACTTCAATCCTGACCATTATCCAGGAAGGTCTAGAGTTCCTTTCTGGGGACTGTTCTCTGCAGTGAGTAAACTGCCCTATCCAGGTGTGTGTGTGTGTGCACAAGACATGAAGGTCAAAGGATTAG-CACTGA------TATGT-GCTTTCCATTTAAAAAAAAATAGGGTGTTATTATCATACTGCAAATGGTCCCAACAGCCAAG--TGTGTGACAGTGATGTTCCTAGCATTACAATGGTGCTGCCAGTCTTAGCTGATCTGTAACCCAAATGTGGCTCAGCAGACTTAAGGCA s speTri2.JH393335 4159893 337 - 10418462 cagaacagaggcctgaatttccaagagaggctcgtctatcacctataaggactccatccctcacttttgtcctgatcatcatccaggaagg-cagtggtccctttctgc--actgcttcctttcgtgagcaaactgccctg-caaggtatgtggacagg-----aggagaggagggtcacagagtcagGCAGTGAGCACGCTGTGG-CACACCTGTTTGGTAAAGGGCA---CGTCCCTAACAGGCTGCAGATGGTCCTCATCGTCAGG--CATGACACTGGTGAGTTTCCATGGTTGCAAGGGCGTGGCCCAAGTCAGCT-ACCTGCCACCTGAGGGGTG------Ggtgttgaggca i speTri2.JH393335 I 32 C 0 s nomLeu2.GL397366 3666975 333 + 6458163 CACAACAGAATCCTGCAGTTTCAAGATAGGTCTACAGAACACTCGCAA---TCCCCACC---ACTTTTGTCCTGGTCACTGTCCGGGAAGG-AGATGATCCCTTTCTGGGGACTGCTCCCTTCAGTGAGCCTACTGCCCTCCCATAGTGTGCGGACAGG-----AGGAGATGAGGGACA----GTCAGAAAatcagcgcactgtggagtcacttttctgataaagggca---------catcagactgcaaatggtccagacggccagattcaggacactgatgagtt-ctggggtcactataacgttcctggagtcagctgCTCTGCAGCCTGAAGGAGGGCTGACAGTGTGGAGGCA i nomLeu2.GL397366 I 5304 I 57 s ailMel1.GL192536.1 1064249 312 - 2169676 CAGAAGGGAATCCTGAATTTTCAGAACTGGTCTATCTAACACCATTAAT--CCCCCACC---ACTTTTATCCTGatc-----------------------cctttctggggacagctgccttcagcgaccaaggagccttccagagttaagtggacagg-----aagagatgagggaca--gagtcagacaatcagtgcattgGAA-GTAGCTTTTCTGATAAAGGGCC---CACCATTG-CAGACTACTAATAGCTC----AGCCATGCTCTTGATACATACGAGTTTCTAGGGCCACAGTGGTGTGGCCAGAGGCAGCTGGTCTGTAAGCTGAAGTGTGCGT---GGTGTTGAGGCA i ailMel1.GL192536.1 C 0 C 0 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=2985.000000 s mm10.chr1_GL456221_random 130148 141 + 206961 TCAACTAAACCCTCAAGATGGTTTCAAAGTTCTAAGCCAGATGCCAGGG------------AAAACTGCTT-TGTAGTAGGTCTCAGTCCCTGAGAGAAGGTAGGCCATTGCCCAGCATGAGGTATCAGGCTATCATGCG-CAGTAGCCTCTGTA s speTri2.JH393335 4160230 128 - 10418462 ctgccaacagccctaagaggggctcgaaggtctgatctatgtaccaggagcaat------caaagcacctt--------ggtttcc-ccctcaagggacaataggtcagcttccagcaggagtcgcaaagctagcaggca------------gCA i speTri2.JH393335 C 0 C 0 s ailMel1.GL192536.1 1064561 148 - 2169676 CCGCCCATAGCCCCCAGAGGGACTC-ATGTCCTGATCAGTGCCCTGGGAGCAGTCAGGAACAAAGTCTCTTGTGATGTGGCTCTCC-CCACTGGGAGACAAGCAG-----GTCCATGAGGAGTCATGAGCCTGGCACACAACCATAGCCCCTGCA i ailMel1.GL192536.1 C 0 I 258 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3667308 57 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=1214.000000 s mm10.chr1_GL456221_random 130289 33 + 206961 GGAGAGTCCCAGTGCCAGCAACCATTAGTAGAG s speTri2.JH393335 4160358 33 - 10418462 AGAGAGAAACAGCATCAGCTGCCAACAGCAGAG i speTri2.JH393335 C 0 C 0 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3667308 57 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 5533 4884 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=273.000000 s mm10.chr1_GL456221_random 130322 1 + 206961 A s speTri2.JH393335 4160391 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s choHof1.scaffold_14362 10417 1 + 23990 A i choHof1.scaffold_14362 I 4884 I 738 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3667308 57 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=2616.000000 s mm10.chr1_GL456221_random 130323 596 + 206961 C-AGGCACTACT---------------------------------------CAGTCACAGCATATTTCCATAGCCCCTGGGA--AGGGTAGTATAAC----ATGCTAGTCTT---GACTTCTCACAGGACTGAGCAAGTATTCAA---------------CCCAGTTGG-TTGAGTT--GCCAGCT-TGAGCAATGGCCATATCTGCTTTCAGTTTCATGTAACTGGCT-------TGAGCAGTGGGCGC----CAGCTTAACTGAGCTC--ACGAACCATGCCC-------AGGTGAGTCTTGATGG-----------AATTTTTCAGAAACT-GCTTCTAGCTTGAAGTACCCTGGACCCCAGGAGTATCAT-----GGGGTTGGAATGTCCTTTAGTATGCTGTTCTCTTTGGAAGACCACAACAGTTTTGGTGCTTCCCCTGTTGTCAGTTTCGGGTCTGTTGTTGACTCTACTCAAGATGGATGTCTTATTTGGGAAAATTCACAAAGCCTCCCTCTGTGCATCAGACCTTCACTTCCACCAATAAAGCTATTGTTCCCAGCCACTAACAATCAGTGAACATCCAGAGGGACCCTGTCCCAAACAAAGTGCTAGGCAAGGATAGACATGTGTCATTGTCTTCTGACCTTTGCACGTGTGCACTGGAACAGACTTGCCTGCATTCATACACACACAT s speTri2.JH393335 4160392 621 - 10418462 CCAGTCACTACTTGGCACTTCCATGAGAGACCCACCCACCAGGCCTTTTGGCAACCAGAGACTGTTTCCACAGCTCATGGCCCCAGAGAAGCATGTCTTTTCTGCCACTCCTATGGTTTTCCCATGTGGTAGACCAAATATGTAAGTCACTGAAGCAAAACCCaatcgtcttgagttctgccagccaggaggagtgaccacgtccactcttagctctgcatagctgtctctgaggctgaacagccatagcagtccagcctcaccaagcatgaatgaaccaggcccgggcctcaggggaatctcaatgagccgaggacccaccaacccagaggtttgcttcaggcttgaag------------cagaggtgccactaggcgaagtccctgtgttcttgactcttccgtttccggttgaagagcaaggtgtttttgaaccaaccttcctcgtcagttctggagcctgagttgaccc-acccaagatgggcttctcaggtgggggagt---caaggcctcTCTCCTCCAGTCATGCTTTCACTTCTAGCAA-------------------------------ATGCAACTCTAGAAGGTGGCTGTCAC-----------------------------TATAGTTGCCAATAATTCTATACA-GTCTCCATTCGCTCAG---TGCCTGTGGTCTTATGCATTCAT i speTri2.JH393335 C 0 C 0 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3667308 57 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 10418 738 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 130919 73 + 206961 GAACATGAACATACATACATCCTATATTTCAGCACACACAGATAAACAAATAGTAACAATCCATCACTGCACC e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e ailMel1.GL192536.1 1064709 258 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161013 0 - 10418462 C e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3667308 57 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 10418 738 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=167.000000 s mm10.chr1_GL456221_random 130992 35 + 206961 ACTAGACAGACCTTCTACTTCTCCAGAGCTGTGGG------------ s ailMel1.GL192536.1 1064967 47 - 2169676 ACAAGATAAGGTCTCTATTTACCCAGCGCCAGTGGTCTTCTCTTACT i ailMel1.GL192536.1 I 258 C 0 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e canFam3.chr25 42498758 11447 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161013 0 - 10418462 C e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3667308 57 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 10418 738 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=3058.000000 s mm10.chr1_GL456221_random 131027 15 + 206961 CCCATGAGTTTGGAT s speTri2.JH393335 4161013 15 - 10418462 TCCTTGCATTCAAAT i speTri2.JH393335 C 0 C 0 s canFam3.chr25 42510205 15 + 51628933 CTTATATGTTCATAT i canFam3.chr25 I 11447 C 0 s ailMel1.GL192536.1 1065014 15 - 2169676 CCTATGTGTTCGTAT i ailMel1.GL192536.1 C 0 C 0 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28831783 2893 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3667308 57 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 10418 738 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=1916.000000 s mm10.chr1_GL456221_random 131042 10 + 206961 AATTAAAGAG s speTri2.JH393335 4161028 10 - 10418462 CATTCAAAGG i speTri2.JH393335 C 0 C 0 s otoGar3.GL873532 28834676 10 - 32117204 AATGAAAGCA i otoGar3.GL873532 I 2893 C 0 s canFam3.chr25 42510220 10 + 51628933 CATTCACAAG i canFam3.chr25 C 0 I 5 s ailMel1.GL192536.1 1065029 10 - 2169676 CATGCACGAG i ailMel1.GL192536.1 C 0 I 5 e ponAbe2.chr2b 122694771 10244 + 135000294 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3667308 57 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212429974 2262 + 221441202 I e choHof1.scaffold_14362 10418 738 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=11007.000000 s mm10.chr1_GL456221_random 131052 52 + 206961 AAAACC-CAACA-------AAAGATTCTACTAGGCTTCCTTAAAGTCCCTCCACCCCAAC s speTri2.JH393335 4161038 49 - 10418462 AAAGCCACAACAGCAAAACAAAGAACCCACTGTGGTTCCTTAAAGTGCT----------- i speTri2.JH393335 C 0 C 0 s otoGar3.GL873532 28834686 42 - 32117204 AAAACT-CAAGG------CAGAAATTCCACTGTGGTTCCTTAATGCCCT----------- i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212432236 40 + 221441202 AAAACA-CAACA--------CATAACCCGCTGCGGTTTCTTTACATTCT----------- i felCat5.chrC1 I 2262 C 0 s canFam3.chr25 42510235 40 + 51628933 AAAGTA-GAACA--------CATAACCTGCTGTAGTTCCTTTAAGCCCT----------- i canFam3.chr25 I 5 C 0 s ailMel1.GL192536.1 1065044 36 - 2169676 AAAACA-CAGCA--------CAGAATCTGCTGCAG----TTTAAGTTCT----------- i ailMel1.GL192536.1 I 5 C 0 e ponAbe2.chr2b 122694771 10244 + 135000294 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17869501 1900 + 84719076 I e nomLeu2.GL397366 3667308 57 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e choHof1.scaffold_14362 10418 738 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=52212.000000 s mm10.chr1_GL456221_random 131104 68 + 206961 CCTGGCCCTTCTGGTGGTATATGAAACAT--GTGAGAGGGTTCATGCTACAACTTGAAGAGAATAGAGAC s speTri2.JH393335 4161087 68 - 10418462 CCAGGTTCTTTGAGAGCTAGATTAAATAT--GTGAGAGGATTTGCATTGCAACTGCAAGAGTATAGAGAT i speTri2.JH393335 C 0 C 0 s otoGar3.GL873532 28834728 70 - 32117204 CCAGGAACTTCAGTGGTTAGAGTAAATATAAATAAGAGGATTTGTTTTATAAGGCCAAGAGTATAAAAAT i otoGar3.GL873532 C 0 I 2 s felCat5.chrC1 212432276 68 + 221441202 CCCGGAACTTCGAGCATTAGATGGCATGTAAGTGGGAGGATTTGGGTCACAACTGCA--CGTACGGAGAC i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42510275 68 + 51628933 CCAGGAACTCCAGGCACTACATGGCACAGAAGTGGGAGGATTTGTGACACAAGTGCA--AGTACAGAGAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1065080 68 - 2169676 CCAGGAGCTCCAGGCACTCGATGGCACGGAAGGGGGAGGATTTGTGTCACAACTACA--AGTACGGAGAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871401 68 + 84719076 CCAGGAACTCCAGGTGCCAGATTAAATGTAAGTGAGAGGATTTGTATTACAACCTGA--AGTACAGAGAT i equCab2.chr6 I 1900 C 0 e ponAbe2.chr2b 122694771 10244 + 135000294 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e nomLeu2.GL397366 3667308 57 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e choHof1.scaffold_14362 10418 738 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=91.000000 s mm10.chr1_GL456221_random 131172 1 + 206961 T s speTri2.JH393335 4161155 1 - 10418462 T i speTri2.JH393335 C 0 C 0 e ponAbe2.chr2b 122694771 10244 + 135000294 I e otoGar3.GL873532 28834798 2 - 32117204 I e canFam3.chr25 42510343 0 + 51628933 C e ailMel1.GL192536.1 1065148 0 - 2169676 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e equCab2.chr6 17871469 0 + 84719076 C e nomLeu2.GL397366 3667308 57 + 6458163 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e felCat5.chrC1 212432344 0 + 221441202 C e choHof1.scaffold_14362 10418 738 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=-19443.000000 s mm10.chr1_GL456221_random 131173 2 + 206961 A-----A s speTri2.JH393335 4161156 7 - 10418462 ATTTAAC i speTri2.JH393335 C 0 C 0 s nomLeu2.GL397366 3667365 3 + 6458163 ---TAA- i nomLeu2.GL397366 I 57 I 1 s otoGar3.GL873532 28834800 1 - 32117204 ---T--- i otoGar3.GL873532 I 2 I 5 s felCat5.chrC1 212432344 2 + 221441202 -TG---- i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42510343 3 + 51628933 -TGT--- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1065148 3 - 2169676 -TGT--- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871469 3 + 84719076 -TAT--- i equCab2.chr6 C 0 C 0 s choHof1.scaffold_14362 11156 2 + 23990 --AT--- i choHof1.scaffold_14362 I 738 I 2878 e ponAbe2.chr2b 122694771 10244 + 135000294 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94063715 11098 + 106825570 I e gorGor3.chr2B 119467714 15699 + 131632457 I e panTro4.chr2B 235513667 13042 + 247518478 I e hg19.chr2 231135942 12683 + 243199373 I e calJac3.chr6 146743587 14076 + 158406734 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=-12657.000000 s mm10.chr1_GL456221_random 131175 1 + 206961 -G s speTri2.JH393335 4161163 1 - 10418462 -A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148625 1 + 243199373 -G i hg19.chr2 I 12683 C 0 s panTro4.chr2B 235526709 1 + 247518478 -G i panTro4.chr2B I 13042 C 0 s gorGor3.chr2B 119483413 1 + 131632457 -G i gorGor3.chr2B I 15699 C 0 s rheMac3.chr12 94074813 1 + 106825570 -G i rheMac3.chr12 I 11098 C 0 s calJac3.chr6 146757663 1 + 158406734 -G i calJac3.chr6 I 14076 C 0 s otoGar3.GL873532 28834806 1 - 32117204 -G i otoGar3.GL873532 I 5 C 0 s felCat5.chrC1 212432346 1 + 221441202 C- i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42510346 1 + 51628933 T- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1065151 1 - 2169676 T- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871472 1 + 84719076 T- i equCab2.chr6 C 0 C 0 e ponAbe2.chr2b 122694771 10244 + 135000294 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e nomLeu2.GL397366 3667368 1 + 6458163 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=207353.000000 s mm10.chr1_GL456221_random 131176 51 + 206961 AAAAC-----TCTCCACATGGAAGTTGAGAGCA-TTCCTTGACTTCCAGTGTAG-------------------------------------CAT s speTri2.JH393335 4161164 88 - 10418462 AAGAC-----TCTCCACATCCCTGTTGAGAACT-TACCCCAACTTCCAGGACAGTCTGTTACCCATCACATTGTCAGACTCAAGAAATGTGCCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148626 88 + 243199373 AAAAC-----TCTCCATATCAGAGTTCAGAATA-TCTCCCAATTTCCAACACAGAATATTATCCATAACACCATCAACCTCAAGGAGGATGTCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235526710 88 + 247518478 AAAAC-----TCTCCATATCAGAGTTCAGAATA-TCTCCCAATTTCCAATACAGAATATTATCCATGACACCATCAGCTTCAAGGAGGATGCCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483414 88 + 131632457 AAAAC-----TCTCCATATCAGAGTTCAGAATT-TCTCCCAATTTCCAATACAGAATATTATCCATAACACCATCAACCTCAAGGAGGATGTCC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705015 88 + 135000294 AAAAC-----TCTCCATATCAGAGTTCAGAATA-TCTCCCAATTTCCAATACAGAATATTATCCATAACACCATCAACCTCAAGGAGGATGTCC i ponAbe2.chr2b I 10244 C 0 s nomLeu2.GL397366 3667369 87 + 6458163 GAAAC-----TCTCCACATCA-AGTTCAGAATA-TCTCCCAATTTCCAATACAGAATATTATCCATAACACCATCAGCTTCAAGGAGGATGCCC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94074814 87 + 106825570 AAAAC-----TCACTACATCA-AGTTCAGAATA-TCTCCCAACTTCCAATATAGAATATTATTTATAACATCATCAGCTTCAAGGAGGATGCCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146757664 88 + 158406734 AAAAT-----TCTCTACATTAGAGCTCAGAATA-TCTCTCAACTTTCATTAGAGAATATTATCTATAACATCATCAGCTTCAAGGACTGTGCCT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28834807 89 - 32117204 AAAAC-----CCTCCACATCAAAGTTGAGAATGTTCCCCCAACTTCCAGTGGAGTACATTATCCATGACATTACCAGCTTCCAGGAACATGTCT i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212432347 51 + 221441202 TTAAG-----TCTCCACGTCAAAGCTGAGAATG-CCTCCGAATCCCCAGCACGGCGG------------------------------------- i felCat5.chrC1 C 0 I 20 s canFam3.chr25 42510347 51 + 51628933 TTAAG-----TCTCCACATCAAAGCTGAGCGGG-CCTCCCAACCTCCAGCATGGCAT------------------------------------- i canFam3.chr25 C 0 I 401 s ailMel1.GL192536.1 1065152 51 - 2169676 TTAAG-----TCTCCCCATCAACACTGAGAGTG-CCTCCCTACCTCCAGCATGGCAT------------------------------------- i ailMel1.GL192536.1 C 0 I 20 s equCab2.chr6 17871473 55 + 84719076 TAATGAAAACCGTCCACGTCCAAGTTGAGGCTG-CCTCCTGA-CTTCAGCACAGTAT------------------------------------- i equCab2.chr6 C 0 I 20 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=98342.000000 s mm10.chr1_GL456221_random 131227 23 + 206961 ------------------TCTCTGGG-----TTGGATTTGCA-CGGT s speTri2.JH393335 4161252 28 - 10418462 ------------------TCTCCTTGCACATTTGAATTTACA-TGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148714 28 + 243199373 ------------------TCTCATTGCACATTTGAATTTACA-CAAC i hg19.chr2 C 0 I 13 s panTro4.chr2B 235526798 28 + 247518478 ------------------TCTCATTGCACATTTGAATTTACA-CAAC i panTro4.chr2B C 0 I 13 s gorGor3.chr2B 119483502 28 + 131632457 ------------------TCTCATTGCACATTTGAATTTACA-CAAC i gorGor3.chr2B C 0 I 13 s ponAbe2.chr2b 122705103 28 + 135000294 ------------------TCTCATTGCACATTTGAATTTACA-CAAC i ponAbe2.chr2b C 0 I 13 s nomLeu2.GL397366 3667456 28 + 6458163 ------------------TCTCATTGCACATTCAAATTTACA-CAAC i nomLeu2.GL397366 C 0 I 13 s rheMac3.chr12 94074901 28 + 106825570 ------------------TCTCATTGCACATTTGCATTTACA-CAAC i rheMac3.chr12 C 0 I 13 s calJac3.chr6 146757752 28 + 158406734 ------------------TCTCATTGCACATTTGAATTTACA-CAAC i calJac3.chr6 C 0 I 13 s otoGar3.GL873532 28834896 28 - 32117204 ------------------TTTCATTGTGTATTCGAATTTACA-CAAC i otoGar3.GL873532 C 0 I 12 s felCat5.chrC1 212432418 46 + 221441202 GCTGTGAGGAGTGTGCCTCCTTATTGCACATTTGAATGTACCAGAA- i felCat5.chrC1 I 20 C 0 s ailMel1.GL192536.1 1065223 45 - 2169676 GCTATGAGGCGTGTGCCTCCTCATGGCACATTTGAATGTACT-GGA- i ailMel1.GL192536.1 I 20 C 0 s equCab2.chr6 17871548 45 + 84719076 GCTATAAGGAGTATGCCTCCTCAGTGCACACTTGAATTTACA-TGA- i equCab2.chr6 I 20 C 0 e canFam3.chr25 42510398 401 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=34903.000000 s mm10.chr1_GL456221_random 131250 9 + 206961 AGATACATG s speTri2.JH393335 4161280 9 - 10418462 AAACGCTTG i speTri2.JH393335 C 0 I 22 s hg19.chr2 231148755 9 + 243199373 AGCAACATG i hg19.chr2 I 13 I 3 s panTro4.chr2B 235526839 9 + 247518478 AGCAACATG i panTro4.chr2B I 13 I 3 s gorGor3.chr2B 119483543 9 + 131632457 AGCAACATG i gorGor3.chr2B I 13 I 3 s ponAbe2.chr2b 122705144 9 + 135000294 AGGAATATG i ponAbe2.chr2b I 13 I 3 s nomLeu2.GL397366 3667497 9 + 6458163 AGGAACATG i nomLeu2.GL397366 I 13 I 3 s rheMac3.chr12 94074942 9 + 106825570 AGGAACATG i rheMac3.chr12 I 13 I 3 s papHam1.scaffold13267 49302 9 + 66950 AGGAACATG i papHam1.scaffold13267 N 0 I 1016 s calJac3.chr6 146757793 9 + 158406734 GGGAACAAG i calJac3.chr6 I 13 I 3 s otoGar3.GL873532 28834936 9 - 32117204 AGGAATGTG i otoGar3.GL873532 I 12 I 14 s felCat5.chrC1 212432464 9 + 221441202 AGACACTTG i felCat5.chrC1 C 0 I 1307 s ailMel1.GL192536.1 1065268 9 - 2169676 AGACACTTG i ailMel1.GL192536.1 C 0 I 24 s equCab2.chr6 17871593 9 + 84719076 AAACACTTG i equCab2.chr6 C 0 I 23 e canFam3.chr25 42510398 401 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=-4319.000000 s mm10.chr1_GL456221_random 131259 3 + 206961 ----CCC s speTri2.JH393335 4161311 3 - 10418462 ----CAG i speTri2.JH393335 I 22 C 0 s ailMel1.GL192536.1 1065301 3 - 2169676 -CCC--- i ailMel1.GL192536.1 I 24 C 0 s equCab2.chr6 17871625 3 + 84719076 AC-C--- i equCab2.chr6 I 23 I 1 e ponAbe2.chr2b 122705153 3 + 135000294 I e otoGar3.GL873532 28834945 14 - 32117204 I e canFam3.chr25 42510398 401 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94074951 3 + 106825570 I e nomLeu2.GL397366 3667506 3 + 6458163 I e gorGor3.chr2B 119483552 3 + 131632457 I e panTro4.chr2B 235526848 3 + 247518478 I e hg19.chr2 231148764 3 + 243199373 I e calJac3.chr6 146757802 3 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=113219.000000 s mm10.chr1_GL456221_random 131262 26 + 206961 CAACATTTATCATTCCATTAG---------TAGGA s speTri2.JH393335 4161314 30 - 10418462 TGACAGTTGTCATCTAGTTAGAAG-----GCAGGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148767 35 + 243199373 CAGCAGTTATCATTCACTTTAAGGTGCCAGCAAGA i hg19.chr2 I 3 C 0 s panTro4.chr2B 235526851 35 + 247518478 CAGCAGTTATCATTCACTCTAAGGTGCCAGCAAGA i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119483555 35 + 131632457 AAGCAGTTATCATTCACTCTAAGGTGCCAGCAAGA i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122705156 35 + 135000294 CAGCAGTTATCATTCACTCTAAGGTGCCAGCAAGA i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3667509 35 + 6458163 CAGCAGTTATCATTTACTCTAAGGTGCCAGCAAGA i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94074954 35 + 106825570 CAACAGTTATCATTCACTCTAAGGTGCCAGCAAGA i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146757805 35 + 158406734 CAGCAGTTATCATTCACTCTAAGGCGGCAGCAAGA i calJac3.chr6 I 3 C 0 s otoGar3.GL873532 28834959 35 - 32117204 CAGTAATTATCATTTACTCTAAGGCACCAGAAGGA i otoGar3.GL873532 I 14 C 0 s ailMel1.GL192536.1 1065304 35 - 2169676 CAACAATGATCATTCAGGATAAGACACCAGCAGGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871629 32 + 84719076 ---CGACAATTATTCCATCTGAGGTACCAGCAGGA i equCab2.chr6 I 1 C 0 e canFam3.chr25 42510398 401 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 2213 7913 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=19105.000000 s mm10.chr1_GL456221_random 131288 3 + 206961 ATT s speTri2.JH393335 4161344 3 - 10418462 GTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148802 3 + 243199373 GTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235526886 3 + 247518478 GTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483590 3 + 131632457 GTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705191 3 + 135000294 GTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667544 3 + 6458163 GTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94074989 3 + 106825570 GTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146757840 3 + 158406734 GTT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28834994 3 - 32117204 GTT i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1065339 3 - 2169676 GTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871661 3 + 84719076 GTT i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 10126 3 - 513109 ATT i dasNov3.JH581855 I 7913 I 2 e canFam3.chr25 42510398 401 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=3979.000000 s mm10.chr1_GL456221_random 131291 2 + 206961 AC s speTri2.JH393335 4161347 2 - 10418462 TA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148805 2 + 243199373 AA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235526889 2 + 247518478 AA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483593 2 + 131632457 AA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705194 2 + 135000294 AA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667547 2 + 6458163 AA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94074992 2 + 106825570 AA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146757843 2 + 158406734 AA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28834997 2 - 32117204 AA i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1065342 2 - 2169676 TA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871664 2 + 84719076 TA i equCab2.chr6 C 0 C 0 e canFam3.chr25 42510398 401 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10129 2 - 513109 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=18619.000000 s mm10.chr1_GL456221_random 131293 3 + 206961 CTT s speTri2.JH393335 4161349 3 - 10418462 TTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148807 3 + 243199373 TTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235526891 3 + 247518478 TTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483595 3 + 131632457 TTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705196 3 + 135000294 TTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667549 3 + 6458163 TTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94074994 3 + 106825570 TTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146757845 3 + 158406734 TTT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28834999 3 - 32117204 CTT i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1065344 3 - 2169676 TTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871666 3 + 84719076 TTT i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 10131 3 - 513109 TTT i dasNov3.JH581855 I 2 C 0 e canFam3.chr25 42510398 401 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 116107 336 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=6695.000000 s mm10.chr1_GL456221_random 131296 1 + 206961 T s speTri2.JH393335 4161352 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148810 1 + 243199373 T i hg19.chr2 C 0 I 4 s panTro4.chr2B 235526894 1 + 247518478 T i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119483598 1 + 131632457 T i gorGor3.chr2B C 0 I 4 s ponAbe2.chr2b 122705199 1 + 135000294 T i ponAbe2.chr2b C 0 I 4 s nomLeu2.GL397366 3667552 1 + 6458163 T i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94074997 1 + 106825570 T i rheMac3.chr12 C 0 I 4 s calJac3.chr6 146757848 1 + 158406734 T i calJac3.chr6 C 0 I 4 s micMur1.scaffold_3075 116443 1 + 176633 T i micMur1.scaffold_3075 I 336 I 951 s otoGar3.GL873532 28835002 1 - 32117204 T i otoGar3.GL873532 C 0 I 5 s ailMel1.GL192536.1 1065347 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871669 1 + 84719076 T i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 10134 1 - 513109 T i dasNov3.JH581855 C 0 C 0 e canFam3.chr25 42510398 401 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e rn5.chr9 92375534 7 + 121549591 I a score=-4059.000000 s mm10.chr1_GL456221_random 131297 4 + 206961 CAC------A s speTri2.JH393335 4161353 10 - 10418462 CTCCTCTTTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148815 2 + 243199373 --------TA i hg19.chr2 I 4 C 0 s panTro4.chr2B 235526899 2 + 247518478 --------TA i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119483603 2 + 131632457 --------TA i gorGor3.chr2B I 4 C 0 s ponAbe2.chr2b 122705204 2 + 135000294 --------TA i ponAbe2.chr2b I 4 C 0 s nomLeu2.GL397366 3667557 2 + 6458163 --------TA i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94075002 2 + 106825570 --------TA i rheMac3.chr12 I 4 C 0 s calJac3.chr6 146757853 2 + 158406734 --------CA i calJac3.chr6 I 4 C 0 s otoGar3.GL873532 28835008 2 - 32117204 --------TA i otoGar3.GL873532 I 5 C 0 s dasNov3.JH581855 10135 4 - 513109 ------TTTA i dasNov3.JH581855 C 0 I 24 e canFam3.chr25 42510398 401 + 51628933 I e ailMel1.GL192536.1 1065348 0 - 2169676 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871670 0 + 84719076 C e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 116444 951 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=1611.000000 s mm10.chr1_GL456221_random 131301 4 + 206961 GG-----TG s speTri2.JH393335 4161363 4 - 10418462 AA-----TT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148817 9 + 243199373 AAAATTTTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235526901 9 + 247518478 AAAATTTTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483605 9 + 131632457 AAAATTTTG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705206 9 + 135000294 AAAATATTG i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3667559 9 + 6458163 AAAATTTTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075004 9 + 106825570 AAAATTTTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146757855 9 + 158406734 AAAATTTTC i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28835010 9 - 32117204 AAAAAATTT i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1065348 8 - 2169676 CCAATTTT- i ailMel1.GL192536.1 C 0 I 30 s equCab2.chr6 17871670 8 + 84719076 CTAACTTT- i equCab2.chr6 C 0 I 13 e canFam3.chr25 42510398 401 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10139 24 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=96215.000000 s mm10.chr1_GL456221_random 131305 20 + 206961 TTCAAAGGGAGGTG--CTCT-----------CC s speTri2.JH393335 4161367 30 - 10418462 TTCAAAGAAATGTGG-CTCTGACAG--TCTCCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148826 33 + 243199373 TTCAAAGGAACGTCATCTCCTGTAGTCTCTCCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235526910 33 + 247518478 TTCAAAGGAAGGTCATCTCCTGTAGTCTCTCCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483614 33 + 131632457 TTCAAAGGAAGGTCATCTCCTATAGTCTCTCCC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705216 32 + 135000294 TTCAAAGGAAGGTCATCTCCTA-AGTCTCTCCC i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3667568 33 + 6458163 TTCAAAGGAAAGTCATCTCCTATAGTCTCTCCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075013 33 + 106825570 TTTCAAGGAAGGTCGTCTCCTATAGTCTCTCCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146757864 31 + 158406734 TTCAAAGGAAGATCATCTCCTATAG--TTTCCC i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28835019 12 - 32117204 TTTGAAG--------------------TCTCC- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42510799 31 + 51628933 TTCAAAGGAAGGTCATCTTCTGTAA--TCTCCC i canFam3.chr25 I 401 C 0 s ailMel1.GL192536.1 1065386 31 - 2169676 TTCAAAGGAAGCTCATCTCCTATAG--TCTCTC i ailMel1.GL192536.1 I 30 C 0 s equCab2.chr6 17871691 31 + 84719076 TTCTAAGGAAAGTCATCTCCTATAG--TCTCCA i equCab2.chr6 I 13 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10139 24 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=7098.000000 s mm10.chr1_GL456221_random 131325 1 + 206961 A s speTri2.JH393335 4161397 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148859 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235526943 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483647 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705248 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667601 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075046 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146757895 1 + 158406734 A i calJac3.chr6 C 0 C 0 s canFam3.chr25 42510830 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1065417 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871722 1 + 84719076 A i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 10163 1 - 513109 A i dasNov3.JH581855 I 24 I 219 e otoGar3.GL873532 28835031 0 - 32117204 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 116444 951 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=498524.000000 s mm10.chr1_GL456221_random 131326 172 + 206961 TGGCCACAGCCCAAGACACATGAAGAACTGAAATTCAACTCT-GGCATCAAATTGCATATGACTAAACTG----TTAAGAATTGTGCCCATTT-CTAAGATCTGAAGTTTGAAAACTGTATCTGAATGCTGCTTTTATTTAAGGCCCAGAGAATT-ACGTTATATCTCTGAATATTGAT---- s speTri2.JH393335 4161398 158 - 10418462 AGCTTGGGAGCCAATGCACAGGCTGGATTAAAATTTTACTCT-CTAATCAACCTCCACGTTGCTATATTGGGTGTTGAGAGTTTTTCCCCATT-----------------GCAAATAGTTCTTGAATACTACTGACATATAAGGCTTGGAGACTTCGATTTATAGCCCTGAAT---GAT---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231148860 175 + 243199373 AGCCCATGGCCCAAGGCTCATGCAGAGGTAAAATATAACTCT-GTACTCAACCTCCACGCTGCTACACTGATCATAAAGTATTTTGCCCCATTCCTGCGGACCAAAGTATGAAAAAAAATCTTTAATACTATTGGCATATAAAACTCAGAGAATTATATTTATACCTCTGCAT---AAT---- i hg19.chr2 C 0 I 4 s panTro4.chr2B 235526944 174 + 247518478 AGCCCATGGCCCAAGGCTCATGCAGAGGTAAAATATAACTCT-GTACTCAACCTCCACGCTGCTACACTGATCATAAAGTATTTTGCCCCATTCCTGCAGACCAAAGTATG-AAAAAAATCTTTAATACTATTGGCATATAAAACTCAGAGAATTATATTTATACCTCTGCAT---AAT---- i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119483648 175 + 131632457 AGCCCAGGGCCCAAGGCTCATGCAGAGGTAAAATATAACTCT-GTACTCAACTTCCACGCTGCTACACTGATCATAAAGTATTTTGCCCCATTCCTGCGGACCAAAGTATGAAAAAAAATCTTTAATACTATTGGCATATAAAACTCAGAGAATTATATTTATACCTCTGCAT---AAT---- i gorGor3.chr2B C 0 I 4 s ponAbe2.chr2b 122705249 174 + 135000294 AGCCCATGGCCCAAGGCTCATGCAGAATTAGAATAGAACTCT-GTACTCAACTTCCACACTACTACACTGATCATAAAGAATTTTGCCCCATTCCTGTGGACCAAAGTATG-AAAAAAATCTTGTACACTACTAGCATATAAAGCTCAAATAATTATATTTATTCCTCTGTAT---AAT---- i ponAbe2.chr2b C 0 I 4 s nomLeu2.GL397366 3667602 175 + 6458163 AGCCCATGGCCCAAGGCTCATGCAGAGGTAAAATATAACTCT-GTACTCAACCTCCACACTGCTACACTGATCATAAAGTATTTTGCCCCATTCCTGTGGACCAAAGTATGAAAAAAAACCTTTAATACTATTGGCATATAAAACTCAGAGAATTATATTTATACCTCTGCAT---AAT---- i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94075047 175 + 106825570 AGCCCATGGCCCAAGGCTCATGCAGAGGTAAAATATAACTCT-GTACTCAACCTCCACACTGCTACACTGATCCTAAAGTATTTTGCCCCATTCCTGCGGACCAAAGTATGAAAAAAAACCTTTACTCTTACTGGCATATAAAACTCAAAGAATTATATTTATACCTCTGCAT---AAT---- i rheMac3.chr12 C 0 I 4 s calJac3.chr6 146757896 170 + 158406734 AACCCATGGCCCAAGGCTCACACCAAGTTAAAACAGAACTCT-ATACTCAACCTCCACATTGCTACACTGATCAT-----ATTTTGCCCCATTCCTGTGAACCTAAATATGAAAAATAAGCTTGAGTACTACTGGCATATAAAACTCAGAGAATTATATTTATACCTCTGCAT---AAG---- i calJac3.chr6 C 0 I 4 s otoGar3.GL873532 28835031 141 - 32117204 ------------------CGTGCATAGTTAAAATATAA---------TCAGCCTTCAAAATCCTACACTAGTCATGAAGAATTTTGCCCCATTCCTGTGGACTAAAGTTAGCAAAAAATGCTTGACTATTACCAACATGTAGGTC--------TTATATTTATAACTCTGAAT---GAT---- i otoGar3.GL873532 C 0 I 4 s canFam3.chr25 42510831 149 + 51628933 GGTCTGTG---------------TGGAGTAAAGCATAACTCT-GCAATCAG-CGTCACACTGCTGCACTGGTA---AAGAATTTTGTCCTGTTCTCCTGGT-------CTAAGAA-AGTATTTGAAA---ACTAGCATATATGGCTTTAAAAATTATATTTATAGCTCTGAAT---AATTAAC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1065418 153 - 2169676 AGTCCACG---------------TGGAATAAAATATGACTCT-GCAATCA--CCCCCCACTGCTGCACTGGTAGTTAAGAATTTTGCCCTGTTCTTGTGGC-------CTGAAAA-AGTATGTGAAA-CTACTAACATATATGGCTTTTAGAATTATATTTACAGCTCTGAAT---GATTAAC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871723 161 + 84719076 GGTCCATG---------------CAGAGTAAAATACAACTCTAATAATCAA-CCTGACACTGCTACACTTGGAGTTAAGAATTTTGCCCCATTCTTGGGGC---AAGTCTGAAAAGAACACTTGAAAACTACTGACATATAAGGCTTTGAGAATTATATTTACAGCTCTGAAT---AATTAAC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10164 219 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I e rn5.chr9 92375534 7 + 121549591 I a score=260987.000000 s mm10.chr1_GL456221_random 131498 56 + 206961 TCTGTT--CTTTTGTTTTGTTTTGAAGGAAAAAAGAAAGGCCACAACTGGTCAAAACC s rn5.chr9 92375541 56 + 121549591 TCTTTC--ATTTTGTTTTGTTTCGAAGGAAAAAAGAAAGGTTACAACTGGTCAAAACC i rn5.chr9 I 7 C 0 s speTri2.JH393335 4161556 52 - 10418462 ----TC--ACTTCATTATTTTTTGAAGGAAAAAAGAAAGGACATAACTGGTCAAGAAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149039 52 + 243199373 ----TT--TATTCTCTTTGGTTTGAAGGAAAAAAGAGGGGGCATGGCTGGAGCAGAAT i hg19.chr2 I 4 C 0 s panTro4.chr2B 235527122 52 + 247518478 ----TT--TATTCTCTTTGGTTTGAAGGAAAAAAGAGGGGGCATGGCTGGAGCAGAAT i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119483827 52 + 131632457 ----TT--TATTCTCTTTGGTTTGAAGGAAAAAAGAGGGGGCATGGCTGGAGCAGAAT i gorGor3.chr2B I 4 C 0 s ponAbe2.chr2b 122705427 49 + 135000294 ----TT--TATTCTCTTTGGTTTGAAGGAAAAAA---GGGGCATGGCTGGAGCAAAAT i ponAbe2.chr2b I 4 C 0 s nomLeu2.GL397366 3667781 52 + 6458163 ----TT--TATTCTCTTTGGTTTGAAGGAAAAAAGAGGGGGCATAGCTGGAGCAGAAT i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94075226 52 + 106825570 ----TT--TATTCTCTTTGGTTTGAAGGAAAAAAGAGGGGGCATTGCTGGACCAGAGT i rheMac3.chr12 I 4 C 0 s calJac3.chr6 146758070 52 + 158406734 ----TT--TATTCTCTTTGGTTTGAAGGAAAAAAGAAGGGGCATTCCTGGACCAGAAT i calJac3.chr6 I 4 C 0 s otoGar3.GL873532 28835176 52 - 32117204 ----TT--TATTCTCTTTGGTTTGAAGGAAGAAAGAAAGGCCATTCCTGGTCCAGAAT i otoGar3.GL873532 I 4 C 0 s canFam3.chr25 42510980 52 + 51628933 ----TT--TATTCTCTTTTGCTTGAAGGAAGAAAGAAAGGCCATGCCTGGACAAGAAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1065571 52 - 2169676 ----TT--TATTCTCTTTTGTTTGAAGGAAAAAAGAAAGGCCATGCCTGGACAAGAGT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871884 54 + 84719076 ----TTAGTCTTTTTTTTTTTTTTTAAGGAAAAAGAAAGGGCATTCCTGGACAGAAAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10164 219 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=8534.000000 s mm10.chr1_GL456221_random 131554 3 + 206961 GAA s rn5.chr9 92375597 3 + 121549591 AAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4161608 3 - 10418462 AAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149091 3 + 243199373 GAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527174 3 + 247518478 GAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483879 3 + 131632457 GAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705476 3 + 135000294 GAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667833 3 + 6458163 GAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075278 3 + 106825570 AAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146758122 3 + 158406734 AAA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28835228 3 - 32117204 TAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42511032 3 + 51628933 TAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1065623 3 - 2169676 TAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17871938 1 + 84719076 --A i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 10383 3 - 513109 GAA i dasNov3.JH581855 I 219 I 312 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=54655.000000 s mm10.chr1_GL456221_random 131557 30 + 206961 ATGGAGAAAGCCAATGAGTGTACAGAGAAA s rn5.chr9 92375600 30 + 121549591 GCGGAGGAAGCCAATGATTGTACGGAGAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4161611 30 - 10418462 AAGGAAAAGGCCACAAAACATACTTCAAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149094 30 + 243199373 AATGAGAAGGCAGGAAAACAGCCAACAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527177 30 + 247518478 AATGAGAAGGCAGAAAAACAGCCAACAAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483882 30 + 131632457 AATGAGAAGGCAGAAAAACAGCCAACAAAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705479 30 + 135000294 AACGAGAAGGCAGAAAAACAGCCAACAAAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667836 30 + 6458163 AAGGAGAAGGCAGAAAAACAGCCAACAAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075281 30 + 106825570 AAGGAGAATGCAGAAAAACGTCCAACAACA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146758125 30 + 158406734 AAGGACAACGCAGAAAAAAATCCAACAGAA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28835231 30 - 32117204 AAGGAGAAGGTATAAACCAATACAACAAAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42511035 18 + 51628933 AAGGAAATATCAGAGAAA------------ i canFam3.chr25 C 0 I 12 s ailMel1.GL192536.1 1065626 18 - 2169676 AAAGAGATGTCAGAGAAA------------ i ailMel1.GL192536.1 C 0 I 12 s equCab2.chr6 17871939 17 + 84719076 GACGGAGTG-CAGAGAAA------------ i equCab2.chr6 C 0 I 4398 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=44743.000000 s mm10.chr1_GL456221_random 131587 8 + 206961 ATGTAAGC s rn5.chr9 92375630 8 + 121549591 ATGTAAGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4161641 8 - 10418462 AGGTAAGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149124 8 + 243199373 TGGTAAGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527207 8 + 247518478 TGGTAAGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483912 8 + 131632457 TGGTAAGC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705509 8 + 135000294 TGGTAAGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667866 8 + 6458163 TGGTAAGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075311 8 + 106825570 TGGTAAGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146758155 8 + 158406734 TGGTAAGC i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28835261 8 - 32117204 TGGTAAGC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42511065 8 + 51628933 AGGTAAGC i canFam3.chr25 I 12 I 78 s ailMel1.GL192536.1 1065656 8 - 2169676 AGGTAAGC i ailMel1.GL192536.1 I 12 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=6006.000000 s mm10.chr1_GL456221_random 131595 1 + 206961 A s rn5.chr9 92375638 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4161649 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149132 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527215 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483920 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705517 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667874 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075319 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146758163 1 + 158406734 A i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28835269 1 - 32117204 A i otoGar3.GL873532 C 0 I 788 s ailMel1.GL192536.1 1065664 1 - 2169676 A i ailMel1.GL192536.1 C 0 I 1275 e canFam3.chr25 42511073 78 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=182868.000000 s mm10.chr1_GL456221_random 131596 62 + 206961 AACCGAGG---GA--CTGGTACAGCTCTTGTGTTTATTAAGGTGTTGTCCATTGCACACTTGGGGGC s rn5.chr9 92375639 62 + 121549591 AATGGAGG---GA--CAGTCACAGCTGTTGAGTTTATTAAGGTGCTGCCCTTTGCATACGTGGGGGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4161650 64 - 10418462 GGCAAAGT---GAAGTAGGTTCATCCTGTGAGTTTATTAAGGCACTGCTCATTGTATGCTTGGAGGC i speTri2.JH393335 C 0 I 1066 s hg19.chr2 231149133 64 + 243199373 GGCAAAGT---GAAGTAGTTACAGCTTTTGAGTTTATTAGGGCACTGTCCATTGTATTCTGGAAGGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527216 64 + 247518478 GGCAAAGT---GAAGTAGTTACAGCTTTTGAGTTTATTAGGGCACTGTCCATTGTATTCTGGAAGGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483921 64 + 131632457 GGCAAAGT---GAAGTAGTTACAGCTTTTGAGTTTATTAAGGCACTGTCCATTGCATTCTGGAAGGC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705518 67 + 135000294 GGCAAAGTGAAGAAGTAGTTACAGCTTTTGAGTTTATTAGGGCACTGTCCATTGTATTCTGGAAGGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3667875 64 + 6458163 GGCAAAGT---GAAGTAGTTACAGCTTTTGAGTTTATTAGGGCACTGTCCATTGTATTCTGGAAGGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075320 64 + 106825570 GGCAAAGT---GAAGTCGTTACAGCTTTTGAGTTTATTAGGGCACTGCCCACTGTATTCTTGAAAGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146758164 64 + 158406734 GGCAGACT---GAAGTAGTTACAGCTTTTGAGTTTATTAGGGCACTGCCCATTGTATTCCTGAAGGC i calJac3.chr6 C 0 C 0 e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511073 78 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=8452.000000 s mm10.chr1_GL456221_random 131658 3 + 206961 TCG s rn5.chr9 92375701 3 + 121549591 CTG i rn5.chr9 C 0 C 0 s hg19.chr2 231149197 3 + 243199373 CTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527280 3 + 247518478 CTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483985 3 + 131632457 CTG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705585 3 + 135000294 CTG i ponAbe2.chr2b C 0 I 42 s nomLeu2.GL397366 3667939 3 + 6458163 CTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075384 3 + 106825570 CTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146758228 3 + 158406734 CTG i calJac3.chr6 C 0 C 0 e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511073 78 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=10275.000000 s mm10.chr1_GL456221_random 131661 6 + 206961 TGAGTT s rn5.chr9 92375704 6 + 121549591 TGAGTT i rn5.chr9 C 0 C 0 s hg19.chr2 231149200 5 + 243199373 -CAGTT i hg19.chr2 C 0 I 30 s panTro4.chr2B 235527283 5 + 247518478 -CAGTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119483988 5 + 131632457 -CAGTT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3667942 5 + 6458163 -CAGTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075387 5 + 106825570 -CAGTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146758231 5 + 158406734 -CAGTT i calJac3.chr6 C 0 C 0 e ponAbe2.chr2b 122705588 42 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511073 78 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=3586.000000 s mm10.chr1_GL456221_random 131667 6 + 206961 GCTGAG s rn5.chr9 92375710 6 + 121549591 TCTGAA i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527288 6 + 247518478 CCCCAG i panTro4.chr2B C 0 I 2 s nomLeu2.GL397366 3667947 6 + 6458163 CCCGAG i nomLeu2.GL397366 C 0 I 29 s rheMac3.chr12 94075392 6 + 106825570 CTCGAG i rheMac3.chr12 C 0 I 31 s calJac3.chr6 146758236 6 + 158406734 CCTGAG i calJac3.chr6 C 0 I 31 e ponAbe2.chr2b 122705588 42 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511073 78 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e gorGor3.chr2B 119483993 0 + 131632457 C e hg19.chr2 231149205 30 + 243199373 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=1925.000000 s mm10.chr1_GL456221_random 131673 12 + 206961 CCATGATTTtgt s rn5.chr9 92375716 12 + 121549591 CCATGATtgtgt i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527296 12 + 247518478 CCAGAGTTCTGT i panTro4.chr2B I 2 I 12 e ponAbe2.chr2b 122705588 42 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511073 78 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075398 31 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3667953 29 + 6458163 I e gorGor3.chr2B 119483993 0 + 131632457 C e hg19.chr2 231149205 30 + 243199373 I e calJac3.chr6 146758242 31 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=-560.000000 s mm10.chr1_GL456221_random 131685 186 + 206961 gtgtgtatgtgtgtgtgtg--------------------------tTGTATTCACACAGGTACATATGGGTGCACATTCTTGCCCCCACATGTGTGGACCTGAGGAGGATGTCAAATATCCTGCTCTCTCATTCTCTACCATATTCCCTTGATAATTGTCAgtcagcaagcccccatgg---gcctgtctctagacccttaacattagtcctata s rn5.chr9 92375728 207 + 121549591 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtATTGTATTCATACAGGTACATATGGGTGCACATACTTGCCCCGACATGTATAGGCC-GTGATAGATATAGAATATCCTGCTCTCCCATTCTCTACCATATTCCC-------TTGCCAGTCAGCAAGCCTCCATGAGCTGCTTGTCACCAGTGCTTTAACACTAGCCCTATA i rn5.chr9 C 0 C 0 s gorGor3.chr2B 119483993 30 + 131632457 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCCAGGG---------CCAGAGTTCTGTACC-----TCCTGTA i gorGor3.chr2B C 0 C 0 e ponAbe2.chr2b 122705588 42 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511073 78 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075398 31 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3667953 29 + 6458163 I e panTro4.chr2B 235527308 12 + 247518478 I e hg19.chr2 231149205 30 + 243199373 I e calJac3.chr6 146758242 31 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=630.000000 s mm10.chr1_GL456221_random 131871 9 + 206961 ggtacatac s rn5.chr9 92375935 9 + 121549591 GGTACATAG i rn5.chr9 C 0 I 279 e ponAbe2.chr2b 122705588 42 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511073 78 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075398 31 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3667953 29 + 6458163 I e gorGor3.chr2B 119484023 0 + 131632457 C e panTro4.chr2B 235527308 12 + 247518478 I e hg19.chr2 231149205 30 + 243199373 I e calJac3.chr6 146758242 31 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=6542.000000 s mm10.chr1_GL456221_random 131880 100 + 206961 ctacgtactttttacgtagaagctggtatctgaactcatagcctcatgcttacCTATTTATTGCTCT--------GTGCAATCTCCACCCTCCCACAAACATTTTATA s rn5.chr9 92376223 108 + 121549591 CTATGTACTTTTTACATGGACGCTGGTGTCTGAGTTCATTTCCTCATGCTTACACATTTATGGCTCTTAAGCACCGTGCAATCTCCACCTTCCCACAAAAATTTTATA i rn5.chr9 I 279 C 0 e ponAbe2.chr2b 122705588 42 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511073 78 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075398 31 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3667953 29 + 6458163 I e gorGor3.chr2B 119484023 0 + 131632457 C e panTro4.chr2B 235527308 12 + 247518478 I e hg19.chr2 231149205 30 + 243199373 I e calJac3.chr6 146758242 31 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=338.000000 s mm10.chr1_GL456221_random 131980 2 + 206961 GC s rn5.chr9 92376331 2 + 121549591 GC i rn5.chr9 C 0 C 0 s canFam3.chr25 42511151 2 + 51628933 GT i canFam3.chr25 I 78 C 0 e ponAbe2.chr2b 122705588 42 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075398 31 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3667953 29 + 6458163 I e gorGor3.chr2B 119484023 0 + 131632457 C e panTro4.chr2B 235527308 12 + 247518478 I e hg19.chr2 231149205 30 + 243199373 I e calJac3.chr6 146758242 31 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=617.000000 s mm10.chr1_GL456221_random 131982 2 + 206961 TA s rn5.chr9 92376333 2 + 121549591 TA i rn5.chr9 C 0 C 0 s hg19.chr2 231149235 2 + 243199373 TC i hg19.chr2 I 30 C 0 s gorGor3.chr2B 119484023 2 + 131632457 TC i gorGor3.chr2B C 0 C 0 s canFam3.chr25 42511153 2 + 51628933 TC i canFam3.chr25 C 0 C 0 e ponAbe2.chr2b 122705588 42 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075398 31 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3667953 29 + 6458163 I e panTro4.chr2B 235527308 12 + 247518478 I e calJac3.chr6 146758242 31 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=3279.000000 s mm10.chr1_GL456221_random 131984 2 + 206961 CA s rn5.chr9 92376335 2 + 121549591 CA i rn5.chr9 C 0 C 0 s hg19.chr2 231149237 2 + 243199373 CA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527320 2 + 247518478 CA i panTro4.chr2B I 12 C 0 s gorGor3.chr2B 119484025 2 + 131632457 CA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3667982 2 + 6458163 CG i nomLeu2.GL397366 I 29 C 0 s canFam3.chr25 42511155 2 + 51628933 CA i canFam3.chr25 C 0 C 0 e ponAbe2.chr2b 122705588 42 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075398 31 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e calJac3.chr6 146758242 31 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=432698.000000 s mm10.chr1_GL456221_random 131986 112 + 206961 TTAAGATATGGATTAAGATGCTGTAACAAAG------------------TCTTTTACCAACAGTTTGT----TTCTGGTTCATGTGGTGGTCCAA--------AGTTGAAAGGGAAGTGCTATCATCCTCAGAAT--------------------AAAATTT s rn5.chr9 92376337 130 + 121549591 CGAAGACATGGGTTAAGGTGCTGTAACAAAGCATCCCAGTGCTACAATGTCTTTTACAAATGGTTTGT----TTCTGGCACACAGGATGGTCCAG--------ATTTGAAAGGGAGGTGCTGTCATCCTCAGAAT--------------------AAAATTT i rn5.chr9 C 0 C 0 s hg19.chr2 231149239 154 + 243199373 TTAGGATGTAGACTAACAGGCTGTGACAAAGAGGCCTGAGAATGCAATGGCTTCAACAAAATG---GT----TTCTAATGCATGTAATAGTCCAGAGGCCCACAGTTAATAGGGAGGTGTTATCATCCTCAGTATG-ACTTTCTTTCCTAGCTCAAAGTATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527322 154 + 247518478 TTAGGATGTAGACTAACAGGCTGTGACAAAGAGGCCTGAGAATGCAATGGCTTCAACAAAATG---GT----TTCTAATGCATGTAATAGTCCAGAGGCCCACAGTTAATAGGGAGGTGTTATCATCCTCAGTATG-ACTTTCTTTCCTAGCTCAAAATATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484027 154 + 131632457 TTAGGATGTAGACTAACAGGCTGTGACAAAGAGGCCTGAGAATGCAATGGCTTCAACAAAATG---GT----TTCTAATGCAAGTAATAGTCCAGAGGCCCACAGTTAATAGGGAGGTGTTATCATCCTCAGTATG-ACTTTCTTTCCTAGCTCAAAGTATT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705630 154 + 135000294 TTAGGATGTAGACTAACAGGCTGTGACAAAGAGGCCTGAGAATGCAATGGCTTTCACAAAATG---GT----TTCTAATGCATGTAATAGTCCAGAGGCCCACAGTTAACAGGGAGGTGTTATCATCCTCAGTATG-ACTTTCTTTAGTAGCTCAATAAATT i ponAbe2.chr2b I 42 C 0 s nomLeu2.GL397366 3667984 154 + 6458163 TTAGGATGTAGACTAACAGGCTGTGACAAAGAGGCCTGAGAATGCAATGGCTTCAACAAAATG---GT----TTCTAATGCATGTTATAGTCCAGAGGCCCACAGTTAATAGGGAGCTGTTATCATCCTCAGTATG-ACTTTCTTCCCTAGCTCAAAGTATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075429 153 + 106825570 ttaggatgtagactaacaggctgtgac-aagaggcctgagaatgcaatggcttcaacaaaatg---gt----ttctcatgcatgtaatagtccggaggCCCACAGTTAATAAGGAGGTGTTATCATCCTCAGTATG-ACTTTCTTTCCTAGCTCAAGAAATT i rheMac3.chr12 I 31 C 0 s calJac3.chr6 146758273 154 + 158406734 TTAGGATGTAGACTAACAGGCTGTGACAAAGAGGCCTGAGAATGCAATGGCCTCAACAAAATG---GT----TTCTCATGCATTTAATAGTCCGGAGATCCACAGTTAACAGGGAGGTGTTATCATCCTCAGTATG-ACTTTCTTTTCTAGCTCAAGAAATT i calJac3.chr6 I 31 C 0 s saiBol1.JH378144 5325 153 + 18451090 TTAGGAGGTCAACTAACAGGCTGTGACAAAGAGGCCTGAGGATGCAATGGCCTCAACAAAATG---GT----TTCTCATGCATGTGATAGTCTGGAGGTCCACAGTTAATAGGGAGGTGTTATCATCCTCAATATA-ACTTTA-TTTCTAGCTCAAGAAATT i saiBol1.JH378144 N 0 C 0 s canFam3.chr25 42511157 155 + 51628933 CAAGGACATAAGCTAAGATGCTGTAACAAAGAGGCCTGAAAACGCGGTGGCTTCC-CAAAATG---GCTTAGTTCTCA-ACACAGAATGACCCAGAGCTAAATGATT--TGGGGAGACACTGCCGTCCTCAATATGTGGCTTCTCTGCTGGGTCAAGAAATG i canFam3.chr25 C 0 C 0 e otoGar3.GL873532 28835270 788 - 32117204 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10386 312 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=6006.000000 s mm10.chr1_GL456221_random 132098 1 + 206961 T s rn5.chr9 92376467 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231149393 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527476 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484181 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705784 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668138 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075582 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146758427 1 + 158406734 T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 5478 1 + 18451090 T i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42511312 1 + 51628933 T i canFam3.chr25 C 0 C 0 s dasNov3.JH581855 10698 1 - 513109 T i dasNov3.JH581855 I 312 I 103 e otoGar3.GL873532 28835270 788 - 32117204 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=178834.000000 s mm10.chr1_GL456221_random 132099 60 + 206961 TTATTGATTTAGAAAAATGTCTAGAAGAAGGATGAATGAAGCAACCAGGCTGCATGTTCA s rn5.chr9 92376468 60 + 121549591 TTGTTGATTTAGAAAAATGTTTACAAGAAGGATGAATGAAGCAGCCAAGCTCCATGTGCA i rn5.chr9 C 0 C 0 s hg19.chr2 231149394 49 + 243199373 TTATTAATTTGGAAAGACATTCCTAAGAGGGCTAAATGAAGAAATCAGG----------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235527477 60 + 247518478 TTATTAATTTGGAAAGACATTCCTAAGAGGGCTAAATGAAGAAATCAGGGtgtatgtgta i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484182 60 + 131632457 TTATTAATTTGGAAAGACATTCCTAAGAGGGCTAAATGAAGAAATCAGGGTGTATGTGTA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705785 60 + 135000294 TTATTAATTTGGAAAAATGTTCTTAAGAGGGTTAAATGAAGAAAGCAAGgtgtatgtgta i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668139 60 + 6458163 TTATTGATTTGGAAAGACATTCCTAAGAGGGCTAAATGAAGAAATCAGGGtgtatgtgta i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075583 60 + 106825570 TTATTAATTTGGAAAGACATTCCGAAGAGGACTAAATGAAGAAATCAGGGtgtatgtgta i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146758428 47 + 158406734 TTATTAATTTGG-AAAATGTTCCCAAGAGGGCTAAATAAAGAAAG------------GTA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 5479 60 + 18451090 TTATTAATTTGGAAAAATCTTCCTAAGAGAGCTAAATGAAGAAAGCAAGGTTTATGTGTA i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42511313 60 + 51628933 GTATTAATTGGGTAAGATGTTCCAAAGAAAGCCAAATGCAAAAAGCAGATTGCATGTGCA i canFam3.chr25 C 0 I 86 e otoGar3.GL873532 28835270 788 - 32117204 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10699 103 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=8309.000000 s mm10.chr1_GL456221_random 132159 3 + 206961 TAT s rn5.chr9 92376528 3 + 121549591 TAT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527537 3 + 247518478 tgt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484242 3 + 131632457 TGT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122705845 3 + 135000294 tgt i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668199 3 + 6458163 tgt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075643 3 + 106825570 tgt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146758475 3 + 158406734 TGT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 5539 3 + 18451090 TGT i saiBol1.JH378144 C 0 C 0 e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e hg19.chr2 231149443 0 + 243199373 C e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10699 103 - 513109 I e micMur1.scaffold_3075 116444 951 + 176633 I a score=7416.000000 s mm10.chr1_GL456221_random 132162 2 + 206961 GT s rn5.chr9 92376531 2 + 121549591 GT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527540 2 + 247518478 gt i panTro4.chr2B C 0 I 10 s gorGor3.chr2B 119484245 2 + 131632457 GT i gorGor3.chr2B C 0 I 68 s ponAbe2.chr2b 122705848 2 + 135000294 gt i ponAbe2.chr2b C 0 I 9 s nomLeu2.GL397366 3668202 2 + 6458163 gt i nomLeu2.GL397366 C 0 I 10 s rheMac3.chr12 94075646 2 + 106825570 gt i rheMac3.chr12 C 0 I 10 s calJac3.chr6 146758478 2 + 158406734 GT i calJac3.chr6 C 0 I 9 s saiBol1.JH378144 5542 2 + 18451090 GT i saiBol1.JH378144 C 0 I 9 s micMur1.scaffold_3075 117395 2 + 176633 at i micMur1.scaffold_3075 I 951 C 0 e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e hg19.chr2 231149443 0 + 243199373 C e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10699 103 - 513109 I a score=13458.000000 s mm10.chr1_GL456221_random 132164 7 + 206961 AAAAAtg s rn5.chr9 92376533 7 + 121549591 AAAAgtg i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527552 7 + 247518478 aaaaata i panTro4.chr2B I 10 C 0 s ponAbe2.chr2b 122705859 7 + 135000294 taaaata i ponAbe2.chr2b I 9 C 0 s nomLeu2.GL397366 3668214 7 + 6458163 aaaaata i nomLeu2.GL397366 I 10 C 0 s rheMac3.chr12 94075658 7 + 106825570 aaaaata i rheMac3.chr12 I 10 C 0 s calJac3.chr6 146758489 7 + 158406734 TAAACta i calJac3.chr6 I 9 C 0 s saiBol1.JH378144 5553 7 + 18451090 TAAAATA i saiBol1.JH378144 I 9 C 0 s micMur1.scaffold_3075 117397 7 + 176633 aaaaatc i micMur1.scaffold_3075 C 0 I 94 e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e gorGor3.chr2B 119484247 68 + 131632457 I e hg19.chr2 231149443 0 + 243199373 C e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10699 103 - 513109 I a score=8434.000000 s mm10.chr1_GL456221_random 132171 11 + 206961 tgtgtgtgtgt s rn5.chr9 92376540 11 + 121549591 tgtgtgtgtgt i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527559 11 + 247518478 catatatgtat i panTro4.chr2B C 0 I 46 s ponAbe2.chr2b 122705866 11 + 135000294 tatatatacgt i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668221 11 + 6458163 tatatatgtat i nomLeu2.GL397366 C 0 I 46 s rheMac3.chr12 94075665 11 + 106825570 tatatatgtat i rheMac3.chr12 C 0 I 81 s calJac3.chr6 146758496 7 + 158406734 tacatat---- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 5560 7 + 18451090 TATATGT---- i saiBol1.JH378144 C 0 C 0 e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e gorGor3.chr2B 119484247 68 + 131632457 I e hg19.chr2 231149443 0 + 243199373 C e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10699 103 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I a score=-735.000000 s mm10.chr1_GL456221_random 132182 6 + 206961 gtg--tgt s rn5.chr9 92376551 6 + 121549591 gtg--tgt i rn5.chr9 C 0 C 0 s hg19.chr2 231149443 2 + 243199373 ------GT i hg19.chr2 C 0 C 0 s ponAbe2.chr2b 122705877 6 + 135000294 ata--tat i ponAbe2.chr2b C 0 I 133 s calJac3.chr6 146758503 8 + 158406734 ataattat i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 5567 6 + 18451090 ACA--TAT i saiBol1.JH378144 C 0 C 0 e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10699 103 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I a score=5096.000000 s mm10.chr1_GL456221_random 132188 12 + 206961 gtgtgtgtgtgt s rn5.chr9 92376557 12 + 121549591 gtgtgtgtgtgt i rn5.chr9 C 0 C 0 s hg19.chr2 231149445 12 + 243199373 GTATGTGTATGT i hg19.chr2 C 0 C 0 s calJac3.chr6 146758511 12 + 158406734 atatgtaattgt i calJac3.chr6 C 0 I 397 s saiBol1.JH378144 5573 12 + 18451090 ATGTATTACTGT i saiBol1.JH378144 C 0 I 3 e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10699 103 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I a score=-820.000000 s mm10.chr1_GL456221_random 132200 1 + 206961 -g s rn5.chr9 92376569 1 + 121549591 -g i rn5.chr9 C 0 I 30 s saiBol1.JH378144 5588 1 + 18451090 T- i saiBol1.JH378144 I 3 C 0 e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149457 0 + 243199373 C e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10699 103 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I a score=671.000000 s mm10.chr1_GL456221_random 132201 5 + 206961 tgtgt s hg19.chr2 231149457 4 + 243199373 -GTGC i hg19.chr2 C 0 C 0 s saiBol1.JH378144 5589 5 + 18451090 TATGT i saiBol1.JH378144 C 0 C 0 e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10699 103 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I e rn5.chr9 92376570 30 + 121549591 I a score=724.000000 s mm10.chr1_GL456221_random 132206 4 + 206961 gaga s hg19.chr2 231149461 4 + 243199373 ACAA i hg19.chr2 C 0 I 2 s saiBol1.JH378144 5594 4 + 18451090 GAAA i saiBol1.JH378144 C 0 I 34 s dasNov3.JH581855 10802 4 - 513109 AAAA i dasNov3.JH581855 I 103 C 0 e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117404 94 + 176633 I e rn5.chr9 92376570 30 + 121549591 I a score=38.000000 s mm10.chr1_GL456221_random 132210 1 + 206961 g s hg19.chr2 231149467 1 + 243199373 G i hg19.chr2 I 2 I 83 s dasNov3.JH581855 10806 1 - 513109 A i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 5598 34 + 18451090 I e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117404 94 + 176633 I e rn5.chr9 92376570 30 + 121549591 I a score=91.000000 s mm10.chr1_GL456221_random 132211 1 + 206961 a s dasNov3.JH581855 10807 1 - 513109 A i dasNov3.JH581855 C 0 I 120 e saiBol1.JH378144 5598 34 + 18451090 I e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149468 83 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117404 94 + 176633 I e rn5.chr9 92376570 30 + 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 132212 32 + 206961 gagagagagagagagagagagagagagagaga e saiBol1.JH378144 5598 34 + 18451090 I e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149468 83 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I e rn5.chr9 92376570 30 + 121549591 I a score=112.000000 s mm10.chr1_GL456221_random 132244 7 + 206961 cagacag s dipOrd1.scaffold_116703 1433 7 + 2127 CACACCA i dipOrd1.scaffold_116703 N 0 N 0 e saiBol1.JH378144 5598 34 + 18451090 I e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149468 83 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I e rn5.chr9 92376570 30 + 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 132251 70 + 206961 agagagacagagacagagacagagacagagagaaacagagagacagagacagggagacacacagagagaa e saiBol1.JH378144 5598 34 + 18451090 I e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149468 83 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I e rn5.chr9 92376570 30 + 121549591 I a score=2227.000000 s mm10.chr1_GL456221_random 132321 38 + 206961 aCCTGCCAAAGCATTAATTTTTGCCTA--AATTCAGGTCT s rn5.chr9 92376600 40 + 121549591 ACCTGTGATAGCATTCGTTTTTGCCTATAAATTCAGGTCT i rn5.chr9 I 30 C 0 e saiBol1.JH378144 5598 34 + 18451090 I e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149468 83 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I a score=6887.000000 s mm10.chr1_GL456221_random 132359 64 + 206961 TTTAATT-----ATTTATCTGTCTAGAGAGAGAAAGATATACTC-GACAGAAAAATAACTGACAGTCCAT s rn5.chr9 92376640 70 + 121549591 CTTAATGTAAGAATTTATCTGTATGTATAGAGAAAGATGTACTTAGAGATAGAAATGACTGACAGTCCAT i rn5.chr9 C 0 C 0 s hg19.chr2 231149551 61 + 243199373 TGTAATT-----ATTTATCTGTACATATAAAAAGACATAAA----TATAGAAAAATAGATGGCAGTTCAT i hg19.chr2 I 83 I 11 e saiBol1.JH378144 5598 34 + 18451090 I e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I a score=15591.000000 s mm10.chr1_GL456221_random 132423 257 + 206961 GATTGTAAATGTGCTCATTGAAggactgatgggatggctctgtgggtgtaagcacgaggcccagagtttggatccctaatacccacattagagtgt-gggcataatgtacatatctgtaacccctcactggggaggcacatccaggtagacccctcacagtgcttgattggtaagtctagtcagatcagtgagtcccaaattgactgtcagacctgtggcaacagc-aaggtggagagctattgaggaagacaccaaac s rn5.chr9 92376710 246 + 121549591 ATTTATAAATGTGTTCATTGAAgggctgatgggacagctcagtggtcacaagcacgaggaactgattttggattcctcacacccacattaaaaagttgggcataatgtacacatctgtactctctcactggggaggcacatatgggtggacccctcacagtggttgattaataagcctagtc-------------ccagatttactgtcagacctgtgtcaacagctaaggtgaagagctattgaggaagacaccaaac i rn5.chr9 C 0 C 0 e saiBol1.JH378144 5598 34 + 18451090 I e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 2102 11947 - 63237 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I a score=579.000000 s mm10.chr1_GL456221_random 132680 14 + 206961 tttgatctctggcc s rn5.chr9 92376956 14 + 121549591 aatgacctctggcc i rn5.chr9 C 0 C 0 s turTru2.JH486691 14049 14 - 63237 tttgtttttatatc i turTru2.JH486691 I 11947 C 0 e saiBol1.JH378144 5598 34 + 18451090 I e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I a score=833.000000 s mm10.chr1_GL456221_random 132694 3 + 206961 tcc s rn5.chr9 92376970 3 + 121549591 tcc i rn5.chr9 C 0 C 0 s saiBol1.JH378144 5632 3 + 18451090 TCA i saiBol1.JH378144 I 34 C 0 s turTru2.JH486691 14063 3 - 63237 tct i turTru2.JH486691 C 0 C 0 e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117404 94 + 176633 I a score=854.000000 s mm10.chr1_GL456221_random 132697 4 + 206961 atgc s rn5.chr9 92376973 4 + 121549591 atgc i rn5.chr9 C 0 C 0 s saiBol1.JH378144 5635 4 + 18451090 ATCC i saiBol1.JH378144 C 0 I 1 s micMur1.scaffold_3075 117498 4 + 176633 attt i micMur1.scaffold_3075 I 94 I 390 s turTru2.JH486691 14066 4 - 63237 ataa i turTru2.JH486691 C 0 C 0 e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I a score=273.000000 s mm10.chr1_GL456221_random 132701 1 + 206961 a s rn5.chr9 92376977 1 + 121549591 a i rn5.chr9 C 0 C 0 s turTru2.JH486691 14070 1 - 63237 a i turTru2.JH486691 C 0 C 0 e saiBol1.JH378144 5639 1 + 18451090 I e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668232 46 + 6458163 I e gorGor3.chr2B 119484247 68 + 131632457 I e panTro4.chr2B 235527570 46 + 247518478 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=3667.000000 s mm10.chr1_GL456221_random 132702 15 + 206961 tgttcaggcacacac-- s rn5.chr9 92376978 15 + 121549591 catgcaagcacactc-- i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527616 15 + 247518478 tatcctgatatatac-- i panTro4.chr2B I 46 C 0 s gorGor3.chr2B 119484315 15 + 131632457 TATCCTGATATACAC-- i gorGor3.chr2B I 68 C 0 s nomLeu2.GL397366 3668278 15 + 6458163 tatcctgatatatac-- i nomLeu2.GL397366 I 46 C 0 s saiBol1.JH378144 5640 9 + 18451090 ------TATGCAGGC-- i saiBol1.JH378144 I 1 C 0 s turTru2.JH486691 14071 15 - 63237 --tccttatttatacat i turTru2.JH486691 C 0 I 8 e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e canFam3.chr25 42511373 86 + 51628933 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=10316.000000 s mm10.chr1_GL456221_random 132717 7 + 206961 acatgca s rn5.chr9 92376993 7 + 121549591 acaTATa i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527631 7 + 247518478 atatgta i panTro4.chr2B C 0 I 13 s gorGor3.chr2B 119484330 7 + 131632457 ATATGTA i gorGor3.chr2B C 0 I 13 s nomLeu2.GL397366 3668293 7 + 6458163 atatgta i nomLeu2.GL397366 C 0 I 13 s saiBol1.JH378144 5649 7 + 18451090 ATATGTA i saiBol1.JH378144 C 0 I 15 s turTru2.JH486691 14094 7 - 63237 atctgta i turTru2.JH486691 I 8 C 0 s canFam3.chr25 42511459 7 + 51628933 ACATACT i canFam3.chr25 I 86 C 0 e ponAbe2.chr2b 122705883 133 + 135000294 I e otoGar3.GL873532 28835270 788 - 32117204 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=205.000000 s mm10.chr1_GL456221_random 132724 1 + 206961 c s rn5.chr9 92377000 1 + 121549591 c i rn5.chr9 C 0 C 0 s otoGar3.GL873532 28836058 1 - 32117204 C i otoGar3.GL873532 I 788 C 0 s turTru2.JH486691 14101 1 - 63237 t i turTru2.JH486691 C 0 C 0 s canFam3.chr25 42511466 1 + 51628933 T i canFam3.chr25 C 0 C 0 e saiBol1.JH378144 5656 15 + 18451090 I e ponAbe2.chr2b 122705883 133 + 135000294 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e rheMac3.chr12 94075676 81 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668300 13 + 6458163 I e gorGor3.chr2B 119484337 13 + 131632457 I e panTro4.chr2B 235527638 13 + 247518478 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=25097.000000 s mm10.chr1_GL456221_random 132725 14 + 206961 aTACATAGGAACAC s rn5.chr9 92377001 14 + 121549591 acacataggaacac i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527651 14 + 247518478 acatataaaaagac i panTro4.chr2B I 13 C 0 s gorGor3.chr2B 119484350 14 + 131632457 ACATATAAAAAGAC i gorGor3.chr2B I 13 C 0 s nomLeu2.GL397366 3668313 14 + 6458163 acatataaagagac i nomLeu2.GL397366 I 13 C 0 s rheMac3.chr12 94075757 14 + 106825570 atatataAAGAGAC i rheMac3.chr12 I 81 C 0 s saiBol1.JH378144 5671 12 + 18451090 --CTACAAAGGGAT i saiBol1.JH378144 I 15 C 0 s otoGar3.GL873532 28836059 14 - 32117204 AGATATAGGAAAAA i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 14102 12 - 63237 --atagagggagac i turTru2.JH486691 C 0 C 0 s canFam3.chr25 42511467 12 + 51628933 --ATAGAGAAAGAC i canFam3.chr25 C 0 C 0 e ponAbe2.chr2b 122705883 133 + 135000294 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17871956 4398 + 84719076 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10808 120 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=5005.000000 s mm10.chr1_GL456221_random 132739 1 + 206961 A s rn5.chr9 92377015 1 + 121549591 a i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527665 1 + 247518478 a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484364 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3668327 1 + 6458163 a i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075771 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 5683 1 + 18451090 A i saiBol1.JH378144 C 0 I 2 s otoGar3.GL873532 28836073 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 14114 1 - 63237 a i turTru2.JH486691 C 0 I 2 s canFam3.chr25 42511479 1 + 51628933 A i canFam3.chr25 C 0 I 2 s dasNov3.JH581855 10928 1 - 513109 a i dasNov3.JH581855 I 120 C 0 e ponAbe2.chr2b 122705883 133 + 135000294 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17871956 4398 + 84719076 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=-2238.000000 s mm10.chr1_GL456221_random 132740 3 + 206961 TTC s rn5.chr9 92377016 3 + 121549591 tac i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527666 3 + 247518478 taa i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484365 3 + 131632457 TAA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706016 3 + 135000294 TTC i ponAbe2.chr2b I 133 C 0 s nomLeu2.GL397366 3668328 3 + 6458163 taa i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075772 3 + 106825570 TTA i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 5686 3 + 18451090 GAG i saiBol1.JH378144 I 2 C 0 s turTru2.JH486691 14117 1 - 63237 --g i turTru2.JH486691 I 2 I 15 s canFam3.chr25 42511482 1 + 51628933 --G i canFam3.chr25 I 2 I 2 s dasNov3.JH581855 10929 3 - 513109 tta i dasNov3.JH581855 C 0 C 0 e otoGar3.GL873532 28836074 0 - 32117204 C e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17871956 4398 + 84719076 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=16756.000000 s mm10.chr1_GL456221_random 132743 7 + 206961 ATGTACA s rn5.chr9 92377019 7 + 121549591 atgtaca i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527669 7 + 247518478 atataGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484368 7 + 131632457 ATATAGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706019 7 + 135000294 ATTTATA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668331 7 + 6458163 atataGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075775 7 + 106825570 ATATAGA i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 5689 7 + 18451090 ATATAGA i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42511485 7 + 51628933 AAATGGA i canFam3.chr25 I 2 C 0 s dasNov3.JH581855 10932 7 - 513109 atataaa i dasNov3.JH581855 C 0 C 0 e otoGar3.GL873532 28836074 0 - 32117204 C e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14118 15 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=2955.000000 s mm10.chr1_GL456221_random 132750 1 + 206961 A s rn5.chr9 92377026 1 + 121549591 c i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527676 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484375 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706026 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668338 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075782 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 5696 1 + 18451090 A i saiBol1.JH378144 C 0 C 0 s turTru2.JH486691 14133 1 - 63237 A i turTru2.JH486691 I 15 I 541 s canFam3.chr25 42511492 1 + 51628933 A i canFam3.chr25 C 0 C 0 s dasNov3.JH581855 10939 1 - 513109 a i dasNov3.JH581855 C 0 C 0 e otoGar3.GL873532 28836074 0 - 32117204 C e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e equCab2.chr6 17871956 4398 + 84719076 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=-4208.000000 s mm10.chr1_GL456221_random 132751 11 + 206961 --ACATGCACACA s rn5.chr9 92377027 11 + 121549591 --acatacacacg i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527677 11 + 247518478 --AAATAGATGGC i panTro4.chr2B C 0 I 18 s gorGor3.chr2B 119484376 11 + 131632457 --AAATAGATGGC i gorGor3.chr2B C 0 I 18 s ponAbe2.chr2b 122706027 5 + 135000294 --AGATA------ i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668339 11 + 6458163 --AAATGGATGGC i nomLeu2.GL397366 C 0 I 18 s rheMac3.chr12 94075783 11 + 106825570 --AAGTGGATGAC i rheMac3.chr12 C 0 I 18 s saiBol1.JH378144 5697 11 + 18451090 --AAATCAACGGC i saiBol1.JH378144 C 0 I 18 s otoGar3.GL873532 28836074 8 - 32117204 -----TCAATTGC i otoGar3.GL873532 C 0 I 18 s canFam3.chr25 42511493 11 + 51628933 --AAATCAATAGA i canFam3.chr25 C 0 C 0 s dasNov3.JH581855 10940 9 - 513109 ctatatata---- i dasNov3.JH581855 C 0 C 0 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=-595.000000 s mm10.chr1_GL456221_random 132762 7 + 206961 TATGCAA s rn5.chr9 92377038 7 + 121549591 catgcaa i rn5.chr9 C 0 C 0 s dasNov3.JH581855 10949 2 - 513109 --GG--- i dasNov3.JH581855 C 0 I 738 e saiBol1.JH378144 5708 18 + 18451090 I e ponAbe2.chr2b 122706032 0 + 135000294 C e otoGar3.GL873532 28836082 18 - 32117204 I e canFam3.chr25 42511504 0 + 51628933 C e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e rheMac3.chr12 94075794 18 + 106825570 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668350 18 + 6458163 I e gorGor3.chr2B 119484387 18 + 131632457 I e panTro4.chr2B 235527688 18 + 247518478 I e hg19.chr2 231149612 11 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=318944.000000 s mm10.chr1_GL456221_random 132769 102 + 206961 AGATACATACATTGGT------------TATTGGAATAGATGTGATGTC--tatatttttatttgtttt---------------------tt--aaaatattGAATATGATCAGCCTTTGTCATGAAA-GGTATTCTTTA s rn5.chr9 92377045 109 + 121549591 aaatgcatacattggt-gatat-ttggttatTGGAATAAATGTGATGTC--tatatttttatttttttt--------------------------aaatattGACTATGGTCATCCTTTGCCATGACA-GGGATTCTTTA i rn5.chr9 C 0 C 0 s hg19.chr2 231149623 131 + 243199373 -----TATGCAGTGGT-TACAT-TTGGTCAGTGTAATAGAGGTGATGTTTATATATTTTTATCTGTGGTTTTTAAATGTATGTGtatatatt--aaaatattataaatCTTCAACATTTTTAATGAAAAAGTGTTATTCA i hg19.chr2 I 11 I 92 s panTro4.chr2B 235527706 131 + 247518478 -----TATGCAGTGGT-TACAT-TTGGTAGGTGTAATAGAGGTGATATTTATATATTTTTATCTGTGGTTTTTAAATGTATGTGtatatatt--aaaatattataaatCTTCAACATTTTTAATGAAAAAGTGTTATTCA i panTro4.chr2B I 18 C 0 s gorGor3.chr2B 119484405 131 + 131632457 -----TATGCAGTGGT-TACAT-TTGGTCAGTGTAATAGAGGTGATGTTTATATATTTTTATCTGTGGTTTTTAAATGTATGTGtatatatt--aaaatattataaatCTTCAACATGTTTAATGAAAAAGTGTTATTCA i gorGor3.chr2B I 18 I 73 s ponAbe2.chr2b 122706032 129 + 135000294 -----TATGCAGTGAT-TACAT-TTAGTCAGTATAATAGAGGTGATGTT--TATATTTTTATTTGTGGTATTTAAGCGTGTGTGTGTGTATT--AAAATTTTTAAAATCTTCAACTTTTATAATGAAAAAGTGGCCTTTA i ponAbe2.chr2b C 0 I 73 s nomLeu2.GL397366 3668368 129 + 6458163 -----TATGCAGTGGT-TATAT-TTGGTCAGTGTAATAGAGGTGATGTT--TATATTTTTATCTGTGGTTTTTAAATGTATGTGTATATATT--AAAATATTATGAATCTTCAACATTTTTAATGAAAAAGTGTTATTCA i nomLeu2.GL397366 I 18 C 0 s rheMac3.chr12 94075812 129 + 106825570 -----TATGTAGTAGT-TACAT-TTGGTCAATGTAATAGAAGCGATATT--TATATTTTTATTTGTGGTTTTCAAATGTATGTGTGTATATT--AAAATATTATAAATCTCCAACATTTTTAATGAAAAAGTGTTATTCA i rheMac3.chr12 I 18 C 0 s saiBol1.JH378144 5726 129 + 18451090 -----CATGCAGTGAT-TACAT-TTGATCAGTATAATAGAGATGATGTT--TATATTTTCATTTGTGGTATTTAAATGTAAGTGTGtatatt--aaaattttttaaatcttcaaattttataatgaaaaagttttcttta i saiBol1.JH378144 I 18 C 0 s otoGar3.GL873532 28836100 120 - 32117204 -----CATACAGTGTT-TACTT-TTGGTCATTGGAATAGAAATAATGTT--TATGTTTT-ATTTGTGGTTTTAAAATGTATATGTGTATATT--AAA--------AATGTTCAACTTTTGTAATGAAACACTGTTACTTA i otoGar3.GL873532 I 18 I 13 s canFam3.chr25 42511504 133 + 51628933 -----TATTCATCAATAAACATATAGGTCATTGGAATGTAGGTGATATT--TATATTTTTATTTGTGTTTTTTAAGTGTATGTGTGTACACTGAAAAATATTAAACACGTTCAAATTTTGCAATGAAAAGGTATTGTTTA i canFam3.chr25 C 0 C 0 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=-13052.000000 s mm10.chr1_GL456221_random 132871 40 + 206961 ----GGGATacatacaaacacacacacacacacacacacacaca s rn5.chr9 92377154 16 + 121549591 ----GGGATACATATA------------------------TCCA i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527837 7 + 247518478 -------AAAAGTA------------------------------ i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3668497 7 + 6458163 -------AAAAATA------------------------------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075941 7 + 106825570 -------AAAAGTA------------------------------ i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 5855 8 + 18451090 ------aaaaaata------------------------------ i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42511637 22 + 51628933 AATAGTAAAATATACAGAGACA---------------------- i canFam3.chr25 C 0 C 0 e ponAbe2.chr2b 122706161 73 + 135000294 I e otoGar3.GL873532 28836220 13 - 32117204 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e gorGor3.chr2B 119484536 73 + 131632457 I e hg19.chr2 231149754 92 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e felCat5.chrC1 212432473 1307 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=300.000000 s mm10.chr1_GL456221_random 132911 1 + 206961 c s rn5.chr9 92377170 1 + 121549591 C i rn5.chr9 C 0 C 0 s felCat5.chrC1 212433780 1 + 221441202 c i felCat5.chrC1 I 1307 C 0 e saiBol1.JH378144 5863 0 + 18451090 C e ponAbe2.chr2b 122706161 73 + 135000294 I e otoGar3.GL873532 28836220 13 - 32117204 I e canFam3.chr25 42511659 0 + 51628933 C e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e rheMac3.chr12 94075948 0 + 106825570 C e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668504 0 + 6458163 C e gorGor3.chr2B 119484536 73 + 131632457 I e panTro4.chr2B 235527844 0 + 247518478 C e hg19.chr2 231149754 92 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 49311 1016 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=16317.000000 s mm10.chr1_GL456221_random 132912 11 + 206961 --acacacgcaca s rn5.chr9 92377171 11 + 121549591 --AAACACGCAAA i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527844 11 + 247518478 --ACATATGCAAA i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3668504 11 + 6458163 --ACATATGCAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94075948 11 + 106825570 --ACATATGCAAA i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 50327 11 + 66950 --ACATATGCCAA i papHam1.scaffold13267 I 1016 C 0 s saiBol1.JH378144 5863 11 + 18451090 --aCATATGCAAA i saiBol1.JH378144 C 0 C 0 s felCat5.chrC1 212433781 13 + 221441202 atacatgtggggg i felCat5.chrC1 C 0 C 0 e ponAbe2.chr2b 122706161 73 + 135000294 I e otoGar3.GL873532 28836220 13 - 32117204 I e canFam3.chr25 42511659 0 + 51628933 C e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e gorGor3.chr2B 119484536 73 + 131632457 I e hg19.chr2 231149754 92 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=-6672.000000 s mm10.chr1_GL456221_random 132923 6 + 206961 --gaga----ga s rn5.chr9 92377182 6 + 121549591 --GGga----ta i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527855 4 + 247518478 --AAGA------ i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3668515 6 + 6458163 --AAGAAA---- i nomLeu2.GL397366 C 0 I 68 s rheMac3.chr12 94075959 4 + 106825570 --AAGA------ i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 50338 4 + 66950 --AAGA------ i papHam1.scaffold13267 C 0 C 0 s saiBol1.JH378144 5874 6 + 18451090 --AAGA--AA-- i saiBol1.JH378144 C 0 C 0 s felCat5.chrC1 212433794 4 + 221441202 --gggt------ i felCat5.chrC1 C 0 C 0 s monDom5.chr8 70621582 6 + 312544902 gagaga------ i monDom5.chr8 N 0 C 0 e ponAbe2.chr2b 122706161 73 + 135000294 I e otoGar3.GL873532 28836220 13 - 32117204 I e canFam3.chr25 42511659 0 + 51628933 C e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e gorGor3.chr2B 119484536 73 + 131632457 I e hg19.chr2 231149754 92 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=705.000000 s mm10.chr1_GL456221_random 132929 3 + 206961 gag s rn5.chr9 92377188 3 + 121549591 gac i rn5.chr9 C 0 C 0 s felCat5.chrC1 212433798 3 + 221441202 ggg i felCat5.chrC1 C 0 I 513 s monDom5.chr8 70621588 3 + 312544902 gag i monDom5.chr8 C 0 C 0 e saiBol1.JH378144 5880 0 + 18451090 C e ponAbe2.chr2b 122706161 73 + 135000294 I e otoGar3.GL873532 28836220 13 - 32117204 I e canFam3.chr25 42511659 0 + 51628933 C e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e rheMac3.chr12 94075963 0 + 106825570 C e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668521 68 + 6458163 I e gorGor3.chr2B 119484536 73 + 131632457 I e panTro4.chr2B 235527859 0 + 247518478 C e hg19.chr2 231149754 92 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 50342 0 + 66950 C e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=5772.000000 s mm10.chr1_GL456221_random 132932 39 + 206961 agagaga-gagagagagagagagagagagagaga-gagaga s rn5.chr9 92377191 41 + 121549591 agatagatgatagataggtagatagatagatagatgataga i rn5.chr9 C 0 C 0 s monDom5.chr8 70621591 39 + 312544902 agagaga-gagagagagagagagagagagagaga-gagaga i monDom5.chr8 C 0 C 0 e saiBol1.JH378144 5880 0 + 18451090 C e ponAbe2.chr2b 122706161 73 + 135000294 I e otoGar3.GL873532 28836220 13 - 32117204 I e canFam3.chr25 42511659 0 + 51628933 C e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e rheMac3.chr12 94075963 0 + 106825570 C e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668521 68 + 6458163 I e gorGor3.chr2B 119484536 73 + 131632457 I e panTro4.chr2B 235527859 0 + 247518478 C e hg19.chr2 231149754 92 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 50342 0 + 66950 C e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=-14597.000000 s mm10.chr1_GL456221_random 132971 40 + 206961 gagaaagagaaagagagagCACACAATTGACCTTA---GAATG----------- s rn5.chr9 92377232 39 + 121549591 tagatagatga-cagatagataCCAATTGACCCTA---GAATG----------- i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527859 16 + 247518478 ---------------------------AAAGACTAGGAGAATA----------- i panTro4.chr2B C 0 C 0 s rheMac3.chr12 94075963 16 + 106825570 ---------------------------AAAGAGTAGGAGAATA----------- i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 50342 16 + 66950 ---------------------------AAAACCTAAGGGAATA----------- i papHam1.scaffold13267 C 0 C 0 s saiBol1.JH378144 5880 14 + 18451090 -----------------------------ATTCTAGGAGAATA----------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836233 25 - 32117204 ------------GAGAAAGGA------AAACCCTAGGAGAATA----------- i otoGar3.GL873532 I 13 C 0 s canFam3.chr25 42511659 16 + 51628933 ---------------------------AAAGCCTATGGGAATA----------- i canFam3.chr25 C 0 I 1 s monDom5.chr8 70621630 40 + 312544902 --------------gagagagagagagagagTCCATAGGATTTTGCTCATTCCT i monDom5.chr8 C 0 C 0 e ponAbe2.chr2b 122706161 73 + 135000294 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e equCab2.chr6 17871956 4398 + 84719076 I e nomLeu2.GL397366 3668521 68 + 6458163 I e gorGor3.chr2B 119484536 73 + 131632457 I e hg19.chr2 231149754 92 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=18463.000000 s mm10.chr1_GL456221_random 133011 11 + 206961 TTTT-GAACAAT s rn5.chr9 92377271 12 + 121549591 TTTTTGAACAAT i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527875 12 + 247518478 TTTTTGCCCAAA i panTro4.chr2B C 0 I 17 s rheMac3.chr12 94075979 12 + 106825570 TTTTTGCACAGA i rheMac3.chr12 C 0 I 17 s papHam1.scaffold13267 50358 12 + 66950 TTTTTGAACAAA i papHam1.scaffold13267 C 0 I 17 s saiBol1.JH378144 5894 12 + 18451090 TTTTTGAACAAA i saiBol1.JH378144 C 0 I 17 s otoGar3.GL873532 28836258 12 - 32117204 TTTTTGAACAAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42511676 8 + 51628933 -TTTTGAAC--- i canFam3.chr25 I 1 C 0 s equCab2.chr6 17876354 11 + 84719076 -TTTTGAACAAG i equCab2.chr6 I 4398 C 0 s monDom5.chr8 70621670 11 + 312544902 TTTTTGCAAAT- i monDom5.chr8 C 0 C 0 e ponAbe2.chr2b 122706161 73 + 135000294 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e nomLeu2.GL397366 3668521 68 + 6458163 I e gorGor3.chr2B 119484536 73 + 131632457 I e hg19.chr2 231149754 92 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=1136.000000 s mm10.chr1_GL456221_random 133022 9 + 206961 TTAACCACA s rn5.chr9 92377283 9 + 121549591 TTAATCACA i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527904 9 + 247518478 CCATCCTCA i panTro4.chr2B I 17 I 6 s gorGor3.chr2B 119484609 3 + 131632457 ------TCA i gorGor3.chr2B I 73 I 6 s ponAbe2.chr2b 122706234 3 + 135000294 ------TCA i ponAbe2.chr2b I 73 I 6 s rheMac3.chr12 94076008 9 + 106825570 CCATCCTCA i rheMac3.chr12 I 17 I 6 s papHam1.scaffold13267 50387 9 + 66950 CTATCCTCA i papHam1.scaffold13267 I 17 I 44 s saiBol1.JH378144 5923 9 + 18451090 CCATCCTCA i saiBol1.JH378144 I 17 I 7 s otoGar3.GL873532 28836270 7 - 32117204 --ATAATTG i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42511684 7 + 51628933 --AATGATA i canFam3.chr25 C 0 C 0 s equCab2.chr6 17876365 9 + 84719076 TTAATTGTG i equCab2.chr6 C 0 C 0 s monDom5.chr8 70621681 9 + 312544902 CTCATCACA i monDom5.chr8 C 0 C 0 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e nomLeu2.GL397366 3668521 68 + 6458163 I e hg19.chr2 231149754 92 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=-4462.000000 s mm10.chr1_GL456221_random 133031 11 + 206961 ----AATATATCTAC-- s rn5.chr9 92377292 7 + 121549591 ----AATATG----C-- i rn5.chr9 C 0 C 0 s panTro4.chr2B 235527919 5 + 247518478 ----GCTAT-------- i panTro4.chr2B I 6 I 5 s gorGor3.chr2B 119484618 5 + 131632457 ----GCTAT-------- i gorGor3.chr2B I 6 I 5 s ponAbe2.chr2b 122706243 5 + 135000294 ----GCTAT-------- i ponAbe2.chr2b I 6 I 6 s rheMac3.chr12 94076023 5 + 106825570 ----GCTAT-------- i rheMac3.chr12 I 6 I 6 s saiBol1.JH378144 5939 5 + 18451090 ----GCTAT-------- i saiBol1.JH378144 I 7 I 6 s otoGar3.GL873532 28836279 5 - 32117204 ----GTTAT-------- i otoGar3.GL873532 I 2 I 6 s canFam3.chr25 42511691 5 + 51628933 ----GCTCT-------- i canFam3.chr25 C 0 I 6 s equCab2.chr6 17876374 5 + 84719076 ----GCTAT-------- i equCab2.chr6 C 0 I 6 s monDom5.chr8 70621690 11 + 312544902 TTCTGTTGT------AT i monDom5.chr8 C 0 C 0 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e nomLeu2.GL397366 3668521 68 + 6458163 I e hg19.chr2 231149754 92 + 243199373 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 50396 44 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=12207.000000 s mm10.chr1_GL456221_random 133042 6 + 206961 A----TGGTG s rn5.chr9 92377299 6 + 121549591 A----TGGCG i rn5.chr9 C 0 C 0 s hg19.chr2 231149846 6 + 243199373 A----TGGTG i hg19.chr2 I 92 I 2 s panTro4.chr2B 235527929 6 + 247518478 A----TGGTG i panTro4.chr2B I 5 I 2 s gorGor3.chr2B 119484628 6 + 131632457 A----TGGTG i gorGor3.chr2B I 5 I 2 s ponAbe2.chr2b 122706254 6 + 135000294 A----TGATG i ponAbe2.chr2b I 6 I 2 s nomLeu2.GL397366 3668589 6 + 6458163 A----TGGTG i nomLeu2.GL397366 I 68 I 2 s rheMac3.chr12 94076034 6 + 106825570 A----TGGTG i rheMac3.chr12 I 6 I 2 s saiBol1.JH378144 5950 6 + 18451090 A----TGATG i saiBol1.JH378144 I 6 I 2 s otoGar3.GL873532 28836290 6 - 32117204 A----TAGTG i otoGar3.GL873532 I 6 I 2 s canFam3.chr25 42511702 9 + 51628933 AATATTGCT- i canFam3.chr25 I 6 C 0 s equCab2.chr6 17876385 5 + 84719076 G----TGAT- i equCab2.chr6 I 6 C 0 s monDom5.chr8 70621701 6 + 312544902 A----TTGTA i monDom5.chr8 C 0 C 0 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e calJac3.chr6 146758523 397 + 158406734 I e papHam1.scaffold13267 50396 44 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=48269.000000 s mm10.chr1_GL456221_random 133048 16 + 206961 GTTTCCTATAATCTTA s rn5.chr9 92377305 7 + 121549591 ATATTTT--------- i rn5.chr9 C 0 C 0 s hg19.chr2 231149854 16 + 243199373 GTTTCATATCATTTTA i hg19.chr2 I 2 C 0 s panTro4.chr2B 235527937 16 + 247518478 GTTTCATATCATTTTA i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119484636 16 + 131632457 GTTTCATATCATTTTA i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122706262 16 + 135000294 GTTTTAGACCATTTTA i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3668597 16 + 6458163 GTTTCATATCATTTTA i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94076042 16 + 106825570 GTTTCATATCATTTTA i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146758920 12 + 158406734 TTCCTATAA----TTA i calJac3.chr6 I 397 C 0 s saiBol1.JH378144 5958 16 + 18451090 ATTTTAGAACATTTTA i saiBol1.JH378144 I 2 C 0 s otoGar3.GL873532 28836298 15 - 32117204 GTTTCATA-CAATTTA i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42511711 16 + 51628933 GTTTCATATAATTTTT i canFam3.chr25 C 0 I 11 s equCab2.chr6 17876390 16 + 84719076 GTTTCATATAATTTTT i equCab2.chr6 C 0 I 11 s monDom5.chr8 70621707 16 + 312544902 GTTTCTTATAATTTTA i monDom5.chr8 C 0 C 0 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e papHam1.scaffold13267 50396 44 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=-1017.000000 s mm10.chr1_GL456221_random 133064 9 + 206961 TAC-CTATAT-- s rn5.chr9 92377312 6 + 121549591 ----CTATAT-- i rn5.chr9 C 0 C 0 s hg19.chr2 231149870 10 + 243199373 TTTTCTGAAT-- i hg19.chr2 C 0 I 4 s panTro4.chr2B 235527953 10 + 247518478 TTTTCTGAAT-- i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119484652 10 + 131632457 TTTTCTGAAT-- i gorGor3.chr2B C 0 I 4 s ponAbe2.chr2b 122706278 10 + 135000294 TTTTCTGAAT-- i ponAbe2.chr2b C 0 I 4 s nomLeu2.GL397366 3668613 10 + 6458163 TTTTCTGAAT-- i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94076058 10 + 106825570 TTTTCTGAAT-- i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146758932 3 + 158406734 TAT--------- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 5974 3 + 18451090 TGT--------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836313 10 - 32117204 TTTTTTGAAT-- i otoGar3.GL873532 C 0 I 9 s vicPac1.scaffold_13731 6642 7 + 11994 ---TCTGAAT-- i vicPac1.scaffold_13731 N 0 I 88 s canFam3.chr25 42511738 7 + 51628933 ---TTCCAGT-- i canFam3.chr25 I 11 I 2 s equCab2.chr6 17876417 7 + 84719076 ---TTCCAGT-- i equCab2.chr6 I 11 I 2 s monDom5.chr8 70621723 9 + 312544902 ---TCCAAGTAT i monDom5.chr8 C 0 C 0 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e papHam1.scaffold13267 50396 44 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=6392.000000 s mm10.chr1_GL456221_random 133073 1 + 206961 T s rn5.chr9 92377318 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231149884 1 + 243199373 T i hg19.chr2 I 4 C 0 s panTro4.chr2B 235527967 1 + 247518478 T i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119484666 1 + 131632457 T i gorGor3.chr2B I 4 C 0 s ponAbe2.chr2b 122706292 1 + 135000294 C i ponAbe2.chr2b I 4 C 0 s nomLeu2.GL397366 3668627 1 + 6458163 T i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94076070 1 + 106825570 C i rheMac3.chr12 I 2 I 2 s papHam1.scaffold13267 50440 1 + 66950 T i papHam1.scaffold13267 I 44 I 1089 s calJac3.chr6 146758935 1 + 158406734 T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 5977 1 + 18451090 T i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836332 1 - 32117204 T i otoGar3.GL873532 I 9 C 0 s canFam3.chr25 42511747 1 + 51628933 T i canFam3.chr25 I 2 C 0 s equCab2.chr6 17876426 1 + 84719076 T i equCab2.chr6 I 2 C 0 s monDom5.chr8 70621732 1 + 312544902 T i monDom5.chr8 C 0 C 0 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e vicPac1.scaffold_13731 6649 88 + 11994 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=1266.000000 s mm10.chr1_GL456221_random 133074 14 + 206961 GTGTATATATTTAC s rn5.chr9 92377319 14 + 121549591 GTGTATATATTTAC i rn5.chr9 C 0 C 0 s hg19.chr2 231149885 14 + 243199373 GTAAATATATTTAT i hg19.chr2 C 0 I 7 s panTro4.chr2B 235527968 14 + 247518478 GTAAATATATTTAT i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 119484667 14 + 131632457 GTAAATATATTTAT i gorGor3.chr2B C 0 I 35 s ponAbe2.chr2b 122706293 2 + 135000294 AT------------ i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668628 14 + 6458163 GTAAATATATATAT i nomLeu2.GL397366 C 0 I 7 s rheMac3.chr12 94076073 14 + 106825570 GTAAATACATATGT i rheMac3.chr12 I 2 I 7 s calJac3.chr6 146758936 6 + 158406734 -C-------TTTAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 5978 13 + 18451090 -CTGAATTTTCCAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836333 10 - 32117204 ----ATATATATCT i otoGar3.GL873532 C 0 I 7 s canFam3.chr25 42511748 12 + 51628933 --ACATACACGTAT i canFam3.chr25 C 0 I 9 s equCab2.chr6 17876427 10 + 84719076 --GCATATA--TAT i equCab2.chr6 C 0 I 9 s monDom5.chr8 70621733 14 + 312544902 GTAAAGATAATAGA i monDom5.chr8 C 0 C 0 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e vicPac1.scaffold_13731 6649 88 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=14318.000000 s mm10.chr1_GL456221_random 133088 8 + 206961 AAACATCC s rn5.chr9 92377333 8 + 121549591 AAACGGTC i rn5.chr9 C 0 C 0 s hg19.chr2 231149906 8 + 243199373 AATCAGGC i hg19.chr2 I 7 C 0 s panTro4.chr2B 235527989 8 + 247518478 AATCAGGC i panTro4.chr2B I 7 C 0 s ponAbe2.chr2b 122706295 5 + 135000294 AATTA--- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668649 8 + 6458163 AATCAGGC i nomLeu2.GL397366 I 7 C 0 s rheMac3.chr12 94076094 8 + 106825570 AATCAGGC i rheMac3.chr12 I 7 C 0 s calJac3.chr6 146758942 8 + 158406734 AATCAGAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 5991 8 + 18451090 AATTATGT i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28836350 8 - 32117204 AATCAGAC i otoGar3.GL873532 I 7 C 0 s canFam3.chr25 42511769 6 + 51628933 --TCGGAC i canFam3.chr25 I 9 C 0 s equCab2.chr6 17876446 6 + 84719076 --ACAGGT i equCab2.chr6 I 9 C 0 s monDom5.chr8 70621747 8 + 312544902 AAACATCC i monDom5.chr8 C 0 N 0 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e gorGor3.chr2B 119484681 35 + 131632457 I e vicPac1.scaffold_13731 6649 88 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=-3536.000000 s mm10.chr1_GL456221_random 133096 6 + 206961 CTGCTG-- s rn5.chr9 92377341 6 + 121549591 CCGCCA-- i rn5.chr9 C 0 C 0 s hg19.chr2 231149914 6 + 243199373 CCCTGA-- i hg19.chr2 C 0 I 2 s panTro4.chr2B 235527997 6 + 247518478 CCCTGA-- i panTro4.chr2B C 0 I 2 s ponAbe2.chr2b 122706300 2 + 135000294 ----TA-- i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3668657 6 + 6458163 CCCTGA-- i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94076102 5 + 106825570 CCT-GA-- i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146758950 6 + 158406734 CCCTAA-- i calJac3.chr6 C 0 I 2 s otoGar3.GL873532 28836358 6 - 32117204 CCCTGA-- i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42511775 8 + 51628933 CCTTGAAA i canFam3.chr25 C 0 C 0 s equCab2.chr6 17876452 8 + 84719076 GCCTGAAA i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 5999 1 + 18451090 I e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4161714 1066 - 10418462 I e turTru2.JH486691 14134 541 - 63237 I e gorGor3.chr2B 119484681 35 + 131632457 I e vicPac1.scaffold_13731 6649 88 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=10961.000000 s mm10.chr1_GL456221_random 133102 4 + 206961 TCTG s rn5.chr9 92377347 4 + 121549591 TCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162780 4 - 10418462 TCTT i speTri2.JH393335 I 1066 C 0 s hg19.chr2 231149922 4 + 243199373 TTTT i hg19.chr2 I 2 I 8 s panTro4.chr2B 235528005 4 + 247518478 TTTT i panTro4.chr2B I 2 I 8 s ponAbe2.chr2b 122706304 4 + 135000294 TGTT i ponAbe2.chr2b I 2 I 4 s nomLeu2.GL397366 3668665 4 + 6458163 TTTT i nomLeu2.GL397366 I 2 I 8 s rheMac3.chr12 94076109 4 + 106825570 TCTT i rheMac3.chr12 I 2 I 8 s calJac3.chr6 146758958 4 + 158406734 TCTT i calJac3.chr6 I 2 I 4 s saiBol1.JH378144 6000 4 + 18451090 TATT i saiBol1.JH378144 I 1 I 4 s otoGar3.GL873532 28836366 4 - 32117204 TATT i otoGar3.GL873532 I 2 I 4 s canFam3.chr25 42511783 4 + 51628933 CCAT i canFam3.chr25 C 0 C 0 s equCab2.chr6 17876460 4 + 84719076 TCTT i equCab2.chr6 C 0 C 0 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e gorGor3.chr2B 119484681 35 + 131632457 I e vicPac1.scaffold_13731 6649 88 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=21924.000000 s mm10.chr1_GL456221_random 133106 3 + 206961 ATT s rn5.chr9 92377351 3 + 121549591 ATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162784 3 - 10418462 ATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149934 3 + 243199373 ATT i hg19.chr2 I 8 C 0 s panTro4.chr2B 235528017 3 + 247518478 ATT i panTro4.chr2B I 8 C 0 s gorGor3.chr2B 119484716 3 + 131632457 ATT i gorGor3.chr2B I 35 C 0 s ponAbe2.chr2b 122706312 3 + 135000294 ATT i ponAbe2.chr2b I 4 C 0 s nomLeu2.GL397366 3668677 3 + 6458163 ATT i nomLeu2.GL397366 I 8 C 0 s rheMac3.chr12 94076121 3 + 106825570 ATT i rheMac3.chr12 I 8 C 0 s calJac3.chr6 146758966 3 + 158406734 ATT i calJac3.chr6 I 4 C 0 s saiBol1.JH378144 6008 3 + 18451090 ATT i saiBol1.JH378144 I 4 C 0 s otoGar3.GL873532 28836374 3 - 32117204 ATT i otoGar3.GL873532 I 4 C 0 s canFam3.chr25 42511787 3 + 51628933 GTT i canFam3.chr25 C 0 I 4 s equCab2.chr6 17876464 3 + 84719076 GTT i equCab2.chr6 C 0 I 3 e ailMel1.GL192536.1 1065665 1275 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e vicPac1.scaffold_13731 6649 88 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=181810.000000 s mm10.chr1_GL456221_random 133109 36 + 206961 TTAGTGATGGTCTAAAGGATTCCTTTCTCCT---AAACA s rn5.chr9 92377354 36 + 121549591 TTAGTAATTGTCTAAGGGTCTGCTTCTTCCT---AAACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162787 38 - 10418462 TTATAAAAGGTCTAGGGAATTCCTTTCTCCTAG-AAATG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149937 39 + 243199373 TTAGCCATGGTCTGAGGACTTCCATTCTTCTAGACGATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528020 39 + 247518478 TTAGCCATGGTCTGGGGACTTCCATTCTTCTAGACGATG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484719 39 + 131632457 TTAGCCATGGTCTGAGGACTTCCGTTCTTCTAGACGATG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706315 39 + 135000294 TTAGTCATGGTCTAAGGATTTCCTTTCTCCTAGTCAACG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668680 39 + 6458163 TTAGCCATGGTCTGGGGACTGCCTTTCTTCTAGATGATG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076124 39 + 106825570 TTAGTCATGGTCTGAGGACTTCCTTTCTTCTAGACGATA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146758969 39 + 158406734 TTAGTCATGGTCTGAGGACTTCCTTTCTTCTAGACGATG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6011 39 + 18451090 TTAGTCATGGTCTAAGTATTTGCTTTCTCCTAGTCAATG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836377 39 - 32117204 TCAGTAATGGTCTAAGGACTCCCTTTCTCCTAGACATTG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42511794 36 + 51628933 TCAGGAGTGGTTTAAAGAGTTCATTCCTTCTAGACA--- i canFam3.chr25 I 4 I 3 s ailMel1.GL192536.1 1066940 36 - 2169676 TCAGTAGTGGTTTAGAGAACTCCTTCCTCCTAGACA--- i ailMel1.GL192536.1 I 1275 I 3 s equCab2.chr6 17876470 36 + 84719076 TTAGTAATGGTTTAAGGAACTCCCTTCTCCTAGACA--- i equCab2.chr6 I 3 I 3 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e vicPac1.scaffold_13731 6649 88 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=10920.000000 s mm10.chr1_GL456221_random 133145 1 + 206961 A s rn5.chr9 92377390 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162825 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149976 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528059 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484758 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706354 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668719 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076163 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759008 1 + 158406734 A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6050 1 + 18451090 A i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836416 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 6737 1 + 11994 A i vicPac1.scaffold_13731 I 88 I 92 s canFam3.chr25 42511833 1 + 51628933 A i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1066979 1 - 2169676 A i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17876509 1 + 84719076 A i equCab2.chr6 I 3 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=56672.000000 s mm10.chr1_GL456221_random 133146 14 + 206961 AAGA-TAATTGCTGT s rn5.chr9 92377391 14 + 121549591 AAGC-TAAATGCTGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162826 14 - 10418462 AGGC-TAACCCTTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149977 14 + 243199373 AGGC-TAAGTCTCAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528060 14 + 247518478 AGGC-TAAGTCTCAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484759 14 + 131632457 AGGC-TAAGTCTCAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706355 12 + 135000294 AGGT-T--GTCTTAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668720 14 + 6458163 AGGC-TAAGTCTCAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076164 14 + 106825570 AGGC-TAAGTCTCAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759009 15 + 158406734 AGGCTTAAGTCTCAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6051 14 + 18451090 AGGC-TAAGTCTTAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836417 14 - 32117204 AGGG-CAAACCTCAT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42511834 14 + 51628933 AAGC-TAGACCTCAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1066980 14 - 2169676 GAGC-TGGACTTCAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876510 14 + 84719076 GGGT-GAGCCCTCAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e vicPac1.scaffold_13731 6738 92 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117502 390 + 176633 I a score=9090.000000 s mm10.chr1_GL456221_random 133160 1 + 206961 T s rn5.chr9 92377405 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162840 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149991 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528074 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484773 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706367 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668734 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076178 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759024 1 + 158406734 T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6065 1 + 18451090 T i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 117892 1 + 176633 C i micMur1.scaffold_3075 I 390 I 1846 s otoGar3.GL873532 28836431 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42511848 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1066994 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876524 1 + 84719076 T i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e vicPac1.scaffold_13731 6738 92 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I a score=341221.000000 s mm10.chr1_GL456221_random 133161 69 + 206961 TTTCAAATGATTATCAATTTTG---CATCAGGTCT-ATGAAGT--------TGGCATTGGAATCCAACTTGATATTAA----TTT s rn5.chr9 92377406 69 + 121549591 TCCCAAATGATTATCAGTTTTG---CATCAGGTCC-ATGAAGT--------AGGCATTGGAATCCAACTGGGTCTTAA----TTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162841 63 - 10418462 TTCCGAATGACTCTCAATTTTGAAACAGCAGATTT---------------------TAAAAATCCTATTAAGAATTAA-AATTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231149992 77 + 243199373 TTCTAAATGATTGTCAATTTTGAATCAGTGGATCT-AAATAGTA-------AGATTTTAGAGTCCTATTGAAAGTTATTAATTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528075 77 + 247518478 TTCTAAATGATTGTCAATTTTGAATCAGTAGATCT-AAATAGTA-------AGATTTTAGAGTCCTATTGAAAGTTATTAATTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484774 77 + 131632457 TTCTAAATGATTGTCAATTTTGAATCAGTGGATCT-AAATAGTA-------AGATTTTAGAGTCCTATTGAAAGTTATTAATTTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706368 77 + 135000294 TTCCAAATGATGCTCAGTTTTGAATCAGTGGATCT-ATATAGTA-------ACATTTTAGAGTCCTATTGAAAATTGTTTATCTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668735 77 + 6458163 TTCTAAATGATTGTCAGTTTTGAATCAGTGGATCT-AAATAGTA-------AGATTTTAGAGTCCTGTTGAAAGTTATTAATTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076179 78 + 106825570 TTCTAAATGATTGTCAATTTTGAATCAGTGGATCTAAAATAGTA-------AGATTTTAGCGTCCTATTGAAAATCGTTAATTTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759025 77 + 158406734 TTCCAAATGATGGTTAATTTTAAATCGGTGGATCT-AAATAATA-------AAATTTTAGAGTCTAATTGAAAATTATTAATTTG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6066 84 + 18451090 TTCCAAATGATGCTCAATTTTGAATCAGTGCATCT-ATATAGTAAGATTTTAGATTTTAGAGTCCTATTGAAAATTGTTAATTTT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836432 75 - 32117204 TTTGAAATGATTCTCAATTTTGAATCAGTAGATAT-ATATAGTG-------GGATTTTAGAGTCCTATT--AAACTATTAATTTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42511849 72 + 51628933 TTCCACATGATTATCAATTTTG---CAACAGATCC-ATATAATG-------AGG-TTTAGAGTCCAATT-AAAATGATTAATTTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1066995 73 - 2169676 TTCCATGTGATTTCCAATTTTG---AAACAGATCC-ATATAATA-------AGATTTTAGAGTCCAATT-AAAATTATTATTTTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876525 75 + 84719076 TTCCACAAGATTGACGATTGAA--TCAGTAGCTCT-ATATAATA-------AGATTTTAGAGTCCAATTAAAAATTATTAATTTT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e vicPac1.scaffold_13731 6738 92 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=3364.000000 s mm10.chr1_GL456221_random 133230 1 + 206961 C s rn5.chr9 92377475 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162904 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150069 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528152 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484851 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706445 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668812 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076257 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759102 1 + 158406734 T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6150 1 + 18451090 C i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836507 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 6830 1 + 11994 t i vicPac1.scaffold_13731 I 92 I 192 s canFam3.chr25 42511921 1 + 51628933 C i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067068 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876600 1 + 84719076 C i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=25874.000000 s mm10.chr1_GL456221_random 133231 33 + 206961 ACCAACTAAGA---GTCTTATGC--------TCTTGACAA-TGTC s rn5.chr9 92377476 33 + 121549591 ACCAACTAAGA---GTCTTAAGC--------TCTCGATAA-TGAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162905 36 - 10418462 ACCAAACCATATACATCTTATGT--------TTTTGACAA-TTAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150070 19 + 243199373 ACCAA--------------------------TCTTGCCAGTTGAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528153 19 + 247518478 ACCGA--------------------------TCTTGCCAGTTGAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484852 19 + 131632457 ACCAA--------------------------TCTTTCCAGTTGAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706446 42 + 135000294 ACCAATC-ATAT--ATCTTCTGTTCTTCTGTTCTTGCCAGTTTAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668813 19 + 6458163 ACCAA--------------------------TCTTGCCAGTTGAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076258 19 + 106825570 ACCAA--------------------------TCTTGCCAGTTGAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759103 35 + 158406734 ATGAAACTATAT--ATCTTCTAT--------TCTTGCCAGTTGAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6151 35 + 18451090 ACCAATCTATGT--ATCTTCTGT--------TCTAGCCAGTTTAA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836508 34 - 32117204 ACTAATCTATAT--GTCTTATT---------TTTTGCTAGTTTAC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42511922 35 + 51628933 ACCAACCTATAT--ATATTATGT--------TCTTGTCAATTTAC i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1067069 34 - 2169676 ACCAATCTATAT--ATCTTA-GT--------TCTTGTCAATTTAC i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17876601 35 + 84719076 AGCAATTTAGGT--GTATTATGT--------TATCATCAAATTAC i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=39.000000 s mm10.chr1_GL456221_random 133264 1 + 206961 C s rn5.chr9 92377509 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162941 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150089 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528172 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484871 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706488 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668832 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076277 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759138 1 + 158406734 G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6186 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836542 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42511957 1 + 51628933 I e ailMel1.GL192536.1 1067103 1 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e equCab2.chr6 17876636 1 + 84719076 I e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=301443.000000 s mm10.chr1_GL456221_random 133265 67 + 206961 TGGCTGTGCTGTTGA---CGAATGTGTACATTTTTGTTTGAAAAG--GAGAAAAG-----GG-GGCTGCATCCATCT-T s rn5.chr9 92377510 68 + 121549591 TGGCTGTGCTGTTGA---CTGATGTGTACATTTTTGTTCGGAAGG--GAGAAAAG-----AGTAGTTGCATCTGCCT-T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4162942 67 - 10418462 TGGCTCCCCTATAGG---TGGATGTGTACATTTTTGTTTGAAAAG--GAAAAAAA-----AT-GGTTGCATCCATTT-T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150090 65 + 243199373 TGGCTTCCTGGTTGG---TGGATGTG-ACAGCTTTGTTTGGAAAG--AAAAAAAA-----GT-GGCTGCGTGCATTT-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528173 65 + 247518478 TGGCTTCCTGGTTGG---TGGATGTG-ACAGCTTTGTTTGGAAAG--AAAAAAAA-----GT-GGCTGCATGCATTT-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484872 65 + 131632457 TGGCTTCCTGGTTGG---TGGATGTG-ACAGCTTTGTTTGGAAAG--AAAAAAAA-----GT-GGTTGCGTGCATTT-- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706489 64 + 135000294 TGTCTGCCCGGTTTG---TGGATGT--ACATTTTTGTTTGGAAAG--AAAAACAA-----GT-GGTTGCATTTATTT-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668833 66 + 6458163 TGGCTGCCTGGTTGG---TGGATGTG-ATAGCTTTGTTTGGAAAG-AAAAAAAAA-----GT-GGCTGCTTGCATTT-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076278 70 + 106825570 TGGCTGCCTGGTTGG---TGGATGTG-ACAGCTTTGTTTGGAAAG--AAAAAAAAAAGGGGG-GGCTGCATGCATTT-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759139 66 + 158406734 TGGCTGCTTGGTTGG---TGGATGTGTATAGTTTTGTTTGGAAAG--GAAAAAAG-----GT-GGCTGCATCCATTT-- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6187 67 + 18451090 TGTCTGCCCAGTTTG---TGGATGTACAT--TTTTGTTTGGAAAGAAAAAAAAAA-----GT-GGTTGCATCTATTTT- i saiBol1.JH378144 C 0 I 352 s otoGar3.GL873532 28836543 64 - 32117204 CAGCTGCCCA-TTGT---TAGATGTGTACATTTTTATTTAGAAAG---AAAAAAA-----GT-AGTAGCATTCATTT-- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42511958 67 + 51628933 TGGCTACCCTGTTGGGTACAATTGTGTACAATTTTGCTTGGAAAG----AAAAAA-----GT-GGTAGCATCTATTT-- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1067104 67 - 2169676 AGGCCGCTCTGTTGG---TGAATGCGTACAATTTTGTTTGGAAAG-AAAAAAAAA-----GT-GGCAGCATCCATTG-- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17876637 67 + 84719076 TGGCTGCCCTGTTTGG--TGAAAGTGTACAGATTTGTTTGGAAAG-AAAAAAAAA-----G--GATTGCATCCATTT-- i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=24296.000000 s mm10.chr1_GL456221_random 133332 11 + 206961 TTT--GAATG---CGT s rn5.chr9 92377578 10 + 121549591 TT---GAATG---CAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163009 9 - 10418462 AT---AAATG----GT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150155 11 + 243199373 --TAAGAATG---GCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528238 11 + 247518478 --TAAGAATG---GCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119484937 11 + 131632457 --TAAGAATG---GCT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122706553 11 + 135000294 --TAAGAATG---GGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668899 11 + 6458163 --TAAGAATG---GCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076348 11 + 106825570 --TAAGAATG---GCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759205 11 + 158406734 --TAAGAATC---GGT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28836607 11 - 32117204 --TAAGAATG---AGT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512025 11 + 51628933 --TAAGAATA---CTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067171 14 - 2169676 --TAAGAATATACCTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876704 11 + 84719076 --TAAGAATG---GTT i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 6254 352 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14134 541 - 63237 I e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=12530.000000 s mm10.chr1_GL456221_random 133343 2 + 206961 AT s rn5.chr9 92377588 2 + 121549591 AT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163018 2 - 10418462 AT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150166 2 + 243199373 GT i hg19.chr2 C 0 I 31 s panTro4.chr2B 235528249 2 + 247518478 GT i panTro4.chr2B C 0 I 31 s gorGor3.chr2B 119484948 2 + 131632457 GT i gorGor3.chr2B C 0 I 31 s ponAbe2.chr2b 122706564 2 + 135000294 GT i ponAbe2.chr2b C 0 N 0 s nomLeu2.GL397366 3668910 2 + 6458163 GT i nomLeu2.GL397366 C 0 I 6 s rheMac3.chr12 94076359 2 + 106825570 GT i rheMac3.chr12 C 0 I 6 s calJac3.chr6 146759216 2 + 158406734 GT i calJac3.chr6 C 0 I 6 s otoGar3.GL873532 28836618 2 - 32117204 GT i otoGar3.GL873532 C 0 I 6 s turTru2.JH486691 14675 2 - 63237 AT i turTru2.JH486691 I 541 C 0 s canFam3.chr25 42512036 2 + 51628933 AT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067185 2 - 2169676 AT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876715 2 + 84719076 AT i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 6254 352 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-40662.000000 s mm10.chr1_GL456221_random 133345 13 + 206961 AATG-AAAAC---CACA---- s rn5.chr9 92377590 13 + 121549591 TATG-AAAAC---CACA---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163020 15 - 10418462 TTTC-AAAAT-GATAAA---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150199 10 + 243199373 ATTATAACAT----------- i hg19.chr2 I 31 I 4 s panTro4.chr2B 235528282 10 + 247518478 ATTATAACAT----------- i panTro4.chr2B I 31 I 4 s gorGor3.chr2B 119484981 10 + 131632457 ATTATAACAT----------- i gorGor3.chr2B I 31 I 4 s ponAbe2.chr2b 122601628 10 + 135000294 ATTATAACAT----------- i ponAbe2.chr2b N 0 I 4 s nomLeu2.GL397366 3668918 9 + 6458163 ACTG-AAAAT----------- i nomLeu2.GL397366 I 6 I 2 s rheMac3.chr12 94076367 9 + 106825570 ATTG-AAAAT----------- i rheMac3.chr12 I 6 I 2 s calJac3.chr6 146759224 10 + 158406734 ATTA-AAAATT---------- i calJac3.chr6 I 6 C 0 s otoGar3.GL873532 28836626 10 - 32117204 AACAAATAAT----------- i otoGar3.GL873532 I 6 C 0 s turTru2.JH486691 14677 13 - 63237 TTTC-AAAAC-------ACTA i turTru2.JH486691 C 0 I 2 s canFam3.chr25 42512038 13 + 51628933 TTTC-AAAAT-------ACCA i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1067187 13 - 2169676 TTTC-AAAAT-------ACCA i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17876717 12 + 84719076 TTTC--AAAT-------TCTG i equCab2.chr6 C 0 I 1 e saiBol1.JH378144 6254 352 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-3838.000000 s mm10.chr1_GL456221_random 133358 1 + 206961 -C s rn5.chr9 92377603 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163035 1 - 10418462 -T i speTri2.JH393335 C 0 C 0 s canFam3.chr25 42512052 1 + 51628933 A- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1067201 1 - 2169676 A- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17876730 1 + 84719076 A- i equCab2.chr6 I 1 C 0 e saiBol1.JH378144 6254 352 + 18451090 I e ponAbe2.chr2b 122601638 4 + 135000294 I e otoGar3.GL873532 28836636 0 - 32117204 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14690 2 - 63237 I e rheMac3.chr12 94076376 2 + 106825570 I e nomLeu2.GL397366 3668927 2 + 6458163 I e gorGor3.chr2B 119484991 4 + 131632457 I e panTro4.chr2B 235528292 4 + 247518478 I e hg19.chr2 231150209 4 + 243199373 I e calJac3.chr6 146759234 0 + 158406734 C e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=49280.000000 s mm10.chr1_GL456221_random 133359 17 + 206961 TATTTGGGCTGAGGTTT s rn5.chr9 92377604 16 + 121549591 TATTTGGGCTGAG-TTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163036 16 - 10418462 TATTTGGACTAAG-TCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150213 16 + 243199373 ATTTAAGTCTGAA-TCA i hg19.chr2 I 4 C 0 s panTro4.chr2B 235528296 16 + 247518478 ATTTAAGTCTGAA-TCA i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119484995 16 + 131632457 ATTTAAGTCTGAA-TCA i gorGor3.chr2B I 4 C 0 s ponAbe2.chr2b 122601642 16 + 135000294 ATTTAAGTCTGAA-TCA i ponAbe2.chr2b I 4 C 0 s nomLeu2.GL397366 3668929 15 + 6458163 -GTTTGGACTGAA-TCA i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94076378 15 + 106825570 -GTTTGGACTGAA-TCA i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146759234 16 + 158406734 TGTCTGGACCGAA-TCA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6606 16 + 18451090 TATTTGGACTGAG-TCA i saiBol1.JH378144 I 352 C 0 s otoGar3.GL873532 28836636 16 - 32117204 TATTTGGATTGAA-TTA i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 14692 15 - 63237 TATTTGTATTTAA-TC- i turTru2.JH486691 I 2 I 7 s canFam3.chr25 42512053 15 + 51628933 TTTTTGGATTTAA-TC- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067202 15 - 2169676 TATTTGGATTTAA-TC- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876731 15 + 84719076 TACTTGGATTTAA-TC- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=11110.000000 s mm10.chr1_GL456221_random 133376 7 + 206961 TTGAAAA--- s rn5.chr9 92377620 7 + 121549591 TTGAAAA--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163052 6 - 10418462 TT-ATAA--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150229 6 + 243199373 TT-ATAA--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528312 6 + 247518478 TT-ATAA--- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485011 6 + 131632457 TT-ATAA--- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601658 6 + 135000294 TT-ATAA--- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668944 6 + 6458163 TT-ATAA--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076393 6 + 106825570 TT-ATAA--- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759250 6 + 158406734 TT-ATAA--- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6622 6 + 18451090 TT-ATGA--- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836652 6 - 32117204 TT-ATAA--- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512068 7 + 51628933 ---ATGATAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067217 7 - 2169676 ---ATTATAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876746 7 + 84719076 ---ATAATAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14707 7 - 63237 I e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=20526.000000 s mm10.chr1_GL456221_random 133383 9 + 206961 CC-CTTCCA-T s rn5.chr9 92377627 9 + 121549591 CA-TTTTCA-T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163058 9 - 10418462 CA-CTTCAC-T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150235 10 + 243199373 CA-TTCTCATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528318 10 + 247518478 CA-TTCTCATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485017 10 + 131632457 CA-TTCTCATT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601664 10 + 135000294 CA-TTTTCATT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668950 10 + 6458163 CA-TTTTCATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076399 10 + 106825570 CA-TTTTCATT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759256 11 + 158406734 CATTTTTCATT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6628 10 + 18451090 TA-TTTTCATT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836658 10 - 32117204 CA-TTTTCATT i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 14714 9 - 63237 CA-TTTTCAT- i turTru2.JH486691 I 7 C 0 s canFam3.chr25 42512075 9 + 51628933 CA-TTTTCAT- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067224 9 - 2169676 CA-TTTTCAT- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876753 3 + 84719076 TT-T------- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212433801 513 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=6695.000000 s mm10.chr1_GL456221_random 133392 1 + 206961 T s rn5.chr9 92377636 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163067 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150245 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528328 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485027 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601674 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668960 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076409 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759267 1 + 158406734 T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6638 1 + 18451090 T i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836668 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212434314 1 + 221441202 T i felCat5.chrC1 I 513 I 696 s equCab2.chr6 17876756 1 + 84719076 T i equCab2.chr6 C 0 C 0 e canFam3.chr25 42512084 0 + 51628933 C e ailMel1.GL192536.1 1067233 0 - 2169676 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14723 0 - 63237 C e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=159324.000000 s mm10.chr1_GL456221_random 133393 28 + 206961 ----AATTATCTTCATGTGTAGGCAAAT------AGAT s rn5.chr9 92377637 28 + 121549591 ----AATTATCTTCATGTGCAGACGGAT------AGAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163068 34 - 10418462 ----AAGTCTATGTGCATGTAGACAAATTCTAGGAGAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150246 34 + 243199373 ----AAGTCTGTGTGTATGTAGACAAATTCTAAGAGAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528329 34 + 247518478 ----AAGTCTGTGTGTATGTAGACAAATTCTAAGAGAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485028 34 + 131632457 ----AAGTCTGTGTGTATGTAGACAAATTCTAAGAGAC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601675 34 + 135000294 ----AAGTCTGTGTGTATGTAGACAAATTCTAAGAGAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668961 34 + 6458163 ----AAGTCTGTGTGTATGTAGACAAATTCTAAGAGAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076410 34 + 106825570 ----AAGTCTGTGTGTATGTAGACAAATTCTAAGAGAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759268 34 + 158406734 ----AAGTCTGTGTGTGTGTAGACAAAGTCTAAGGTAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6639 34 + 18451090 ----AAGTCTGTGTGCATATAGACAAATTCTGAGAGAC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836669 34 - 32117204 ----AGGTCTGTGTATATGTAGACAAATTCTAAGAGAC i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 14723 26 - 63237 --TTAGGTCTGTGTGTCCATACATAAAT---------- i turTru2.JH486691 C 0 I 16 s canFam3.chr25 42512084 26 + 51628933 --TTAGGTCTCCGTGTACATAGATAAAT---------- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067233 26 - 2169676 --TTAAGTCTCTGTGTACGTAGATAAAT---------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876757 28 + 84719076 GTTTAGGTTTATGTGTTTGTAGATAAAT---------- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 6831 192 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=10920.000000 s mm10.chr1_GL456221_random 133421 1 + 206961 T s rn5.chr9 92377665 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163102 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150280 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528363 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485062 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601709 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668995 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076444 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759302 1 + 158406734 T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6673 1 + 18451090 T i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836703 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 7023 1 + 11994 T i vicPac1.scaffold_13731 I 192 I 26 s canFam3.chr25 42512110 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067259 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876785 1 + 84719076 T i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14749 16 - 63237 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-36180.000000 s mm10.chr1_GL456221_random 133422 5 + 206961 ------------------TCTTT s rn5.chr9 92377666 5 + 121549591 ------------------TCTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163103 5 - 10418462 ------------------TCTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150281 1 + 243199373 ------------------T---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528364 1 + 247518478 ------------------T---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485063 1 + 131632457 ------------------T---- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601710 1 + 135000294 ------------------T---- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668996 1 + 6458163 ------------------T---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076445 1 + 106825570 ------------------T---- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759303 1 + 158406734 ------------------T---- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6674 1 + 18451090 ------------------T---- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836704 2 - 32117204 ------------------T---T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512111 15 + 51628933 CTAAACCACTT----CTTT---- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067260 19 - 2169676 CTAAACTACTTTGTACTTT---- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876786 15 + 84719076 CTAAATCACTT----CTTT---- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14749 16 - 63237 I e vicPac1.scaffold_13731 7024 26 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=16797.000000 s mm10.chr1_GL456221_random 133427 12 + 206961 CCAACATATTAA s rn5.chr9 92377671 12 + 121549591 CCAATATTTTAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163108 6 - 10418462 CCAA------AG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150282 5 + 243199373 -CAA------TG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528365 5 + 247518478 -CAA------TG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485064 5 + 131632457 -CAA------TG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601711 5 + 135000294 -CAA------TG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3668997 5 + 6458163 -CAA------TG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076446 5 + 106825570 -CAA------TG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759304 5 + 158406734 -CGA------TG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6675 5 + 18451090 -CAA------TA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836706 6 - 32117204 CCAA------CA i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 14765 6 - 63237 CCAA------AG i turTru2.JH486691 I 16 I 14 s canFam3.chr25 42512126 6 + 51628933 CCAA------AG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067279 6 - 2169676 CCAA------AG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876801 6 + 84719076 GCAA------GG i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 7024 26 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=78744.000000 s mm10.chr1_GL456221_random 133439 14 + 206961 TACAACTGAATCCT s rn5.chr9 92377683 14 + 121549591 AATGACTGAATTAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163114 14 - 10418462 CATGATTAGATCTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150287 14 + 243199373 TGCAATTAAATCCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528370 14 + 247518478 TGCAATTAAATCCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485069 14 + 131632457 TGCAATTAAATCCT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601716 14 + 135000294 TACAATTAAATCCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669002 14 + 6458163 TACAATTAAATCCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076451 14 + 106825570 TACAATTAAATCCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759309 14 + 158406734 TGCAATTAAATCCT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6680 14 + 18451090 TACAATTAAATCCT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836712 11 - 32117204 TATACTTAAAT--- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512132 14 + 51628933 TACAATGAAATCTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067285 14 - 2169676 TACAATGAAATCTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876807 14 + 84719076 TACAATGAAATCTC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 14771 14 - 63237 I e vicPac1.scaffold_13731 7024 26 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=5792.000000 s mm10.chr1_GL456221_random 133453 1 + 206961 G s rn5.chr9 92377697 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163128 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150301 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528384 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485083 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601730 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669016 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076465 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759323 1 + 158406734 G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6694 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s turTru2.JH486691 14785 1 - 63237 G i turTru2.JH486691 I 14 C 0 s canFam3.chr25 42512146 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067299 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876821 1 + 84719076 G i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28836723 0 - 32117204 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 7024 26 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=33456.000000 s mm10.chr1_GL456221_random 133454 5 + 206961 CATGT s rn5.chr9 92377698 5 + 121549591 CGCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163129 5 - 10418462 CACAT i speTri2.JH393335 C 0 I 354 s hg19.chr2 231150302 5 + 243199373 TGTGT i hg19.chr2 C 0 I 1 s panTro4.chr2B 235528385 5 + 247518478 TGTGT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119485084 5 + 131632457 TGTGT i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122601731 5 + 135000294 TGTGT i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3669017 5 + 6458163 TGTGT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94076466 5 + 106825570 TGTGT i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146759324 5 + 158406734 TGTGT i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 6695 5 + 18451090 TATGT i saiBol1.JH378144 C 0 I 1 s vicPac1.scaffold_13731 7050 5 + 11994 TATGT i vicPac1.scaffold_13731 I 26 C 0 s turTru2.JH486691 14786 5 - 63237 TATGT i turTru2.JH486691 C 0 C 0 s canFam3.chr25 42512147 5 + 51628933 TATGT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067300 5 - 2169676 TATGT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17876822 5 + 84719076 TAGGT i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28836723 0 - 32117204 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=18384.000000 s mm10.chr1_GL456221_random 133459 7 + 206961 -GCTTTAA s rn5.chr9 92377703 7 + 121549591 -GCTTTAA i rn5.chr9 C 0 C 0 s hg19.chr2 231150308 7 + 243199373 -ACTTAAA i hg19.chr2 I 1 C 0 s panTro4.chr2B 235528391 7 + 247518478 -ACTTAAA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119485090 7 + 131632457 -ACTTAAA i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122601737 7 + 135000294 -ACTTAAA i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3669023 7 + 6458163 -ACTTAAA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94076472 7 + 106825570 -ACTTAAA i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146759330 7 + 158406734 -ATTAAAA i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 6701 7 + 18451090 -ATTTAAA i saiBol1.JH378144 I 1 C 0 s vicPac1.scaffold_13731 7055 7 + 11994 AATTTAA- i vicPac1.scaffold_13731 C 0 I 990 s turTru2.JH486691 14791 7 - 63237 ACTTTAA- i turTru2.JH486691 C 0 I 437 s canFam3.chr25 42512152 7 + 51628933 AATTTAA- i canFam3.chr25 C 0 I 7 s ailMel1.GL192536.1 1067305 7 - 2169676 AATTTAA- i ailMel1.GL192536.1 C 0 I 555 s equCab2.chr6 17876827 7 + 84719076 AATTTAA- i equCab2.chr6 C 0 I 7 e otoGar3.GL873532 28836723 0 - 32117204 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163134 354 - 10418462 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=108668.000000 s mm10.chr1_GL456221_random 133466 79 + 206961 CCCTGACTTCTGCCTGGAAGACCACAGCTC--------CTTGTTGTGAGCTCTTATCCA---------------------CAGTGTGCGGAGAAAGCACCCTGAAGTA s rn5.chr9 92377710 79 + 121549591 CCCTGACTTCTGTCTGGAAGGACACAGCTC--------CTCGTTGAGAGCTCTTATCCA---------------------CCGTGTGTGGAGAAAGTACCCTGCCGTA i rn5.chr9 C 0 C 0 s hg19.chr2 231150315 60 + 243199373 AGTCGACACT--CCCAAAAGCAAAAAA-------------TGCTCTGGACACCTGCTCG---------------------------------AGGGGATCCAGAATGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528398 60 + 247518478 AGTCGACACT--CCCAAAAGCAGAAAA-------------TGCTCTGGACACCTGCTCG---------------------------------AGGGGATCCAGAATGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485097 60 + 131632457 AGTCGACACT--CCCAAAAGCAGAAAA-------------TGCTCTAGACACCTGCTCG---------------------------------AGGGGATCCAGAATGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601744 60 + 135000294 AGTCAACACT--CCCAAAAGCAGAAAA-------------TGCTCTGGACACCTGCTCG---------------------------------AGGGGATCCAGAATGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669030 60 + 6458163 AGTTGACACT--CCCAAAAGCAGAAAA-------------TGCTCTGGACACCTGCTCG---------------------------------AGGGGATCCAGAATGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076479 79 + 106825570 AGTCGACAAT--CTCAAAAGCAGAAAA-------------TGCTCTGGACACCTGCTTGA------GGTTCCTTGTCTG--------AAAAAAGGGGATCCAGAATGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759337 86 + 158406734 AGCTGACACT--CCT-CAAGCAGAAAA-------------TGCTCTGGACACCTGCTTGA------GGTTCCGTGTCTGAGTGTCTAAAGAAAGAGGATCCAGAATTA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6708 87 + 18451090 AGTCAACACT--CCTAAAAACAGAAAA-------------TGCTCTGGATACCTGCTTGA------GGTTCCTTGTCTGACTGTCTGAAGAAAGGGCATCCAGAATCA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836723 86 - 32117204 -GTTGACCCT--CCTAACAGTAGAAAA-------------TCCTCTGGACACTTGCTTGA------GGTTCTTTGTCTGAATGTATAAAGAAAAGGGATCCAGAATTA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512166 100 + 51628933 ------CCCT--CCTAAAAGTGGAGCATGTTCTGGACACCTGCTTGAGATCCCTTGCCACTAATGTGCTTTCTTGTCTGAGTGAATAGTGAAAGGAGGTTCAGAATTG i canFam3.chr25 I 7 C 0 s equCab2.chr6 17876841 100 + 84719076 ------CCCT--TCTAAAAGTAGAGAATGCTCTGGTCACCTGCTAGAGATCCTTTCCCACTAACTTCCTTTCTTGTCTGAGTGTATGGTGAAACGGAGTTCAGAATTG i equCab2.chr6 I 7 C 0 e ailMel1.GL192536.1 1067312 555 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163134 354 - 10418462 I e turTru2.JH486691 14798 437 - 63237 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 10951 738 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-2829.000000 s mm10.chr1_GL456221_random 133545 3 + 206961 G---CA s rn5.chr9 92377789 3 + 121549591 G---CA i rn5.chr9 C 0 C 0 s hg19.chr2 231150375 6 + 243199373 GACCCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528458 6 + 247518478 GACCCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485157 6 + 131632457 GACCCA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601804 6 + 135000294 GACCCA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669090 6 + 6458163 AACCTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076558 6 + 106825570 AACCCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759423 6 + 158406734 AACCCA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6795 6 + 18451090 AACCCA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836809 6 - 32117204 AACCCA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512266 3 + 51628933 AAT--- i canFam3.chr25 C 0 I 13 s equCab2.chr6 17876941 3 + 84719076 AAT--- i equCab2.chr6 C 0 I 13 s dasNov3.JH581855 11689 3 - 513109 -ACC-- i dasNov3.JH581855 I 738 I 520 e ailMel1.GL192536.1 1067312 555 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163134 354 - 10418462 I e turTru2.JH486691 14798 437 - 63237 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-4553.000000 s mm10.chr1_GL456221_random 133548 4 + 206961 AGAT s rn5.chr9 92377792 4 + 121549591 GGAG i rn5.chr9 C 0 C 0 s hg19.chr2 231150381 1 + 243199373 G--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528464 1 + 247518478 G--- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485163 1 + 131632457 G--- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601810 1 + 135000294 G--- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669096 1 + 6458163 G--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076564 1 + 106825570 G--- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759429 1 + 158406734 G--- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6801 1 + 18451090 G--- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836815 1 - 32117204 G--- i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42512269 13 + 51628933 I e ailMel1.GL192536.1 1067312 555 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163134 354 - 10418462 I e turTru2.JH486691 14798 437 - 63237 I e equCab2.chr6 17876944 13 + 84719076 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=6867.000000 s mm10.chr1_GL456221_random 133552 5 + 206961 GCCTC- s rn5.chr9 92377796 5 + 121549591 CCCTT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163488 5 - 10418462 GCTTC- i speTri2.JH393335 I 354 C 0 s hg19.chr2 231150382 5 + 243199373 GACTC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528465 5 + 247518478 GACTC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485164 5 + 131632457 CACTC- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122601811 5 + 135000294 GACTC- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669097 5 + 6458163 GACTC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94076565 5 + 106825570 GACTC- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146759430 5 + 158406734 GACTC- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 6802 5 + 18451090 GACTC- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28836816 5 - 32117204 GGTTC- i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 15235 5 - 63237 -GCTTG i turTru2.JH486691 I 437 I 200 s canFam3.chr25 42512282 5 + 51628933 -ACTTG i canFam3.chr25 I 13 C 0 s equCab2.chr6 17876957 5 + 84719076 -ACTTG i equCab2.chr6 I 13 C 0 e ailMel1.GL192536.1 1067312 555 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=5912.000000 s mm10.chr1_GL456221_random 133557 20 + 206961 --------CC-TCTCTCCTTCCATTT-CCC s rn5.chr9 92377801 21 + 121549591 --------CC-TTGCTCCTTCCATTTTCCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163493 20 - 10418462 --------TT-TTTGTTCCCACCTGT-CAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150387 20 + 243199373 --------CC-TCACTTGCGTTTGTT-CCT i hg19.chr2 C 0 I 9 s panTro4.chr2B 235528470 20 + 247518478 --------CC-TCACTTGCGTTTGTT-CCT i panTro4.chr2B C 0 I 9 s gorGor3.chr2B 119485169 20 + 131632457 --------CC-TCACTTGTGTTTGTT-CCT i gorGor3.chr2B C 0 I 9 s ponAbe2.chr2b 122601816 20 + 135000294 --------CC-TCACTTGCGTTTGTT-CCT i ponAbe2.chr2b C 0 N 0 s nomLeu2.GL397366 3669102 20 + 6458163 --------CC-TCACTTGGGTTTGTT-CCT i nomLeu2.GL397366 C 0 I 9 s rheMac3.chr12 94076570 20 + 106825570 --------CC-TCACTTGCTTTTGGT-CCA i rheMac3.chr12 C 0 I 6 s calJac3.chr6 146759435 20 + 158406734 --------CC-TCACTTGCTTTTGGT-CCA i calJac3.chr6 C 0 I 9 s saiBol1.JH378144 6807 20 + 18451090 --------CC-TCACTAGCTTTTGGT-CCA i saiBol1.JH378144 C 0 I 9 s otoGar3.GL873532 28836821 21 - 32117204 --------CCTTCACTGGCTCTTAGT-CCA i otoGar3.GL873532 C 0 I 6 s canFam3.chr25 42512287 21 + 51628933 CTTTTTGGTC-TCTCATGTCAA-------- i canFam3.chr25 C 0 C 0 s equCab2.chr6 17876962 20 + 84719076 C-TTTTGGTC-TCACATGTCAT-------- i equCab2.chr6 C 0 C 0 e ailMel1.GL192536.1 1067312 555 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15240 200 - 63237 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=28250.000000 s mm10.chr1_GL456221_random 133577 5 + 206961 CTGTG s rn5.chr9 92377822 5 + 121549591 CTGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163513 5 - 10418462 CTGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150416 5 + 243199373 CTGTT i hg19.chr2 I 9 C 0 s panTro4.chr2B 235528499 5 + 247518478 CTGTT i panTro4.chr2B I 9 C 0 s gorGor3.chr2B 119485198 5 + 131632457 CTGTT i gorGor3.chr2B I 9 C 0 s ponAbe2.chr2b 122707112 5 + 135000294 CTGTT i ponAbe2.chr2b N 0 C 0 s nomLeu2.GL397366 3669131 5 + 6458163 CTGTT i nomLeu2.GL397366 I 9 C 0 s rheMac3.chr12 94076596 5 + 106825570 CAGTT i rheMac3.chr12 I 6 C 0 s calJac3.chr6 146759464 5 + 158406734 CTGTT i calJac3.chr6 I 9 C 0 s saiBol1.JH378144 6836 5 + 18451090 CTGTT i saiBol1.JH378144 I 9 C 0 s otoGar3.GL873532 28836848 5 - 32117204 CAGCT i otoGar3.GL873532 I 6 C 0 s canFam3.chr25 42512308 5 + 51628933 CTGTT i canFam3.chr25 C 0 C 0 s equCab2.chr6 17876982 5 + 84719076 CTGCT i equCab2.chr6 C 0 C 0 e ailMel1.GL192536.1 1067312 555 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15240 200 - 63237 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=701059.000000 s mm10.chr1_GL456221_random 133582 154 + 206961 GTTTGGCTCAACTC------CGAGTTTGCCTGTGTCCCTCT-TAGGTGGCAGAATAGCTGTTGTCCAGGCAGCTTTCAAGAGAAAGAAAATGAAAAAGAACCCAGGACACACTGCTAAGATCAGGGGTAAGAC-AGCTTCTGTGGGTCT--TTCCCTTCACCTT s rn5.chr9 92377827 151 + 121549591 CATT--TCCAACTC------TGCATTTGCCTGTGTCCCTCC-TAGATGGCAGAAGAGCCGTTACCCAGGCAGTTTTCAGGAGAAAGAAAATGAA---GAACCCAGGACTCTCTGCTAAGATCAGGGGTAAGAC-AGCTTCTTTGGATCTCATCCCATCTCCCTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163518 154 - 10418462 GTTCTGCCCAACTC------TCCCTTT-CCCATGTCTGTCCACAGGCAACAGCACAGCTAATGACCACAAGGCGTCCAGCAACGAGGCGGTGAAAATGAACCTGCGAGGCCCTGCTAGGATCAGGGGTAGGAC-AAAATCGGTAGCACG--TTACCTCCGCATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150421 160 + 243199373 GTTCTGCCCAGTTCTATTAATACATTTTCCCCTGCCTATCCCCAGATAATAGCAAAGCCGACGGCCAGGTGGTCTCCAGTGAAAAGAAGGCGAACGTGAATCTGAAAGACCTTTCCAAGATTAGGGGTAAGAT-AAAGTTTGT-CCGCT--TTCCCTTTGCCCT i hg19.chr2 C 0 I 58 s panTro4.chr2B 235528504 160 + 247518478 GTTCTGCCCAGTTCTATTAATACATTTTCCCCTGCCTATCCCCAGATAATAGCAAAGCCGACGGCCAGCTGGTCTCCAGTGAAAAGAAGGCGAACGTGAATCTGAAAGACCTTTCCAAGATTAGGGGTAAGAT-AAAGTTCGT-CCGCT--CTCCCTTTGCCCT i panTro4.chr2B C 0 I 58 s gorGor3.chr2B 119485203 155 + 131632457 GTTCTGCCCAGTTCTATTAATACATTTTCCCCTGCCTATCCCCAGATAATAGCAAAGCCGACGGCCAGCTGGTCTCCAGTGAAAAGAAGGCGAACATGAATCTGAAAGACCTTTCCAAGATTAGGGGTAAGAT-AAAGTTTGT-CCGCT--TTAGCTTT----- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707117 161 + 135000294 GTTCTGCCCAGTTCTATTAATACATTTTCCCCTGCCTATCCCCAGTTAACAGCAAAGCCGATGGCCAGCTGGTCTCAAGTGAAAAGAAGGCAAACGTGAATCTGAAAGACCTTTCCAAGATTAGGGGTAAGAT-AAAGTTTGTACCACT--TTTCATTTGCCCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669136 160 + 6458163 GTTCTGCCCAGTTCTATTAATACATTTTCCCCTGCCTATCCCCAGATAATAGCAAAGCCGACGGCCAGCTGGTCTCCAGTGAAAAGAAGGTGAACGTGGATCTGAAAGGCCTCTCCAAGATTAGGGGTAAGGT-AAAGTTTGT-CCGCT--TTCCCTTTGCCCT i nomLeu2.GL397366 C 0 I 58 s rheMac3.chr12 94076601 161 + 106825570 TTTCTGCCCAGTTCTATTAATACATGTTCCCCTGCCTATTCCCAGAAAACAGCAAAGGCAATGGCCAGGTGGTCTCGAATGAAAAGAAGGCGAACGTGAATCTGAAAGGCCTTTCCAAGATTAGGGGTAAGAT-AAAGTTTGTGCCGCT--TTCCCTTTGCCCT i rheMac3.chr12 C 0 I 906 s calJac3.chr6 146759469 156 + 158406734 GTTCTGCCCTTTTCTATTAATATATTTCCCCCTGCCTATCCCCAGGTAACGGCAAAGCTGATGGCCAGTTGATGTCCAGTGAAAAGAAGGCGAACGTGAATCTCCAAGGCCCTTCCAAGATTAGGAGTAAGATAAAAGTTTATGCCACT--TTCCTTT------ i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 6841 159 + 18451090 GTTCTGCCCTGTTCTGTTAATAGATTTTCCCCTGCTTATCCCCAGGTAATGGCAAAGTTGATGGCCAGCTGGTCTCCAGTAAAAAGAAGGCGAATGTGAATCTGCCAGGCCCTTTCAAGATTAGGGGTAAGAT---GGTTTGTACCACT--TTTCATTTGCCCT i saiBol1.JH378144 C 0 I 54 s otoGar3.GL873532 28836853 145 - 32117204 GTTTTGTTCAACTC------TCCATTTCCCCACCTCTATCCCCAGAGAACGACAAAGCTGATGGTCAGTTGGTCTCCAGTAAAAAT------AACATGACTCACCAACCCCTTGCCAAGCTAAAAGGTA-----AGAGTCTGTGCCACT--GTCCCTTTGCCTT i otoGar3.GL873532 C 0 I 3 s canFam3.chr25 42512313 155 + 51628933 ATTTTGTCCAACTC------AGTATCTCCCCTTGCTTATCCCTAGACAGCAGCAACACTGCTGGCCAGTTGGTCTCCAGGGGGAAAAAGGTGAAAATGCGTCTGCAAGAACTTGCCAAGATCAAGAGTAAGAT-AAACTTTGTGCCACT--TCCACTTGGCCCT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1067867 145 - 2169676 GTTTTGTCCAACTC------TGTATCTTCCCCTGCTTATCCCTAGACAGAAGCAATACTGCTGACCAGTTGATCTCCAGTGAGAAAAGGGTGAAAATACCTCTGCAAGAACGTGCCAAGATCAGGGGTAAGAT-AAAGTTTGTGCCACT--TCC---------- i ailMel1.GL192536.1 I 555 C 0 s equCab2.chr6 17876987 155 + 84719076 GTTTTGCTCAACTT------CATATTTTCCCCTGCCAATCCCCAGACAAGAGAAAAGTTGGTGGCCAGTTGGTCTCAAGTAGAGAGAATGTGAAAATGAATCTGCAAGACCCTGCCAAGACTAGGGGTAAGAT-AAAGTTTGTGTCACT--CCCACTTTGCCCT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15240 200 - 63237 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-1649.000000 s mm10.chr1_GL456221_random 133736 1 + 206961 -T s rn5.chr9 92377978 1 + 121549591 -T i rn5.chr9 C 0 C 0 s canFam3.chr25 42512468 1 + 51628933 G- i canFam3.chr25 C 0 I 57 s equCab2.chr6 17877142 1 + 84719076 G- i equCab2.chr6 C 0 I 14 e saiBol1.JH378144 7000 54 + 18451090 I e ponAbe2.chr2b 122707278 0 + 135000294 C e otoGar3.GL873532 28836998 3 - 32117204 I e ailMel1.GL192536.1 1068012 0 - 2169676 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163672 0 - 10418462 C e turTru2.JH486691 15240 200 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e nomLeu2.GL397366 3669296 58 + 6458163 I e gorGor3.chr2B 119485358 0 + 131632457 C e panTro4.chr2B 235528664 58 + 247518478 I e hg19.chr2 231150581 58 + 243199373 I e calJac3.chr6 146759625 1 + 158406734 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-3990.000000 s mm10.chr1_GL456221_random 133737 4 + 206961 GTCT s rn5.chr9 92377979 4 + 121549591 GTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163672 3 - 10418462 -GCA i speTri2.JH393335 C 0 C 0 s gorGor3.chr2B 119485358 3 + 131632457 -GCC i gorGor3.chr2B C 0 I 60 s ponAbe2.chr2b 122707278 3 + 135000294 -GCA i ponAbe2.chr2b C 0 I 7 s calJac3.chr6 146759626 2 + 158406734 -GT- i calJac3.chr6 I 1 I 13 s ailMel1.GL192536.1 1068012 4 - 2169676 ACCT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877157 3 + 84719076 -TTT i equCab2.chr6 I 14 C 0 e saiBol1.JH378144 7000 54 + 18451090 I e otoGar3.GL873532 28836998 3 - 32117204 I e canFam3.chr25 42512469 57 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15240 200 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e nomLeu2.GL397366 3669296 58 + 6458163 I e panTro4.chr2B 235528664 58 + 247518478 I e hg19.chr2 231150581 58 + 243199373 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-11452.000000 s mm10.chr1_GL456221_random 133741 13 + 206961 -GGTAAGGTT--------GGGG s rn5.chr9 92377983 21 + 121549591 -GGTAAGGGTTGGGGGGGAGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163675 13 - 10418462 -GGTCAGTAC--------AGAT i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122707288 6 + 135000294 --------GC--------AAAT i ponAbe2.chr2b I 7 C 0 s calJac3.chr6 146759641 6 + 158406734 --------AC--------AAAT i calJac3.chr6 I 13 C 0 s otoGar3.GL873532 28837001 13 - 32117204 -GGTCAATCC--------AAGG i otoGar3.GL873532 I 3 C 0 s ailMel1.GL192536.1 1068016 11 - 2169676 GGCCCCG-----------TGGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877160 14 + 84719076 TGCTAAGGTT--------TGGG i equCab2.chr6 C 0 I 26 e saiBol1.JH378144 7000 54 + 18451090 I e canFam3.chr25 42512469 57 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15240 200 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e nomLeu2.GL397366 3669296 58 + 6458163 I e gorGor3.chr2B 119485361 60 + 131632457 I e panTro4.chr2B 235528664 58 + 247518478 I e hg19.chr2 231150581 58 + 243199373 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-2260.000000 s mm10.chr1_GL456221_random 133754 13 + 206961 TTATCTGAAGATT- s rn5.chr9 92378004 13 + 121549591 GAATCTGAAGATA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163688 13 - 10418462 TTTGCTACAGTTT- i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122707294 10 + 135000294 GT---TGAGGTTT- i ponAbe2.chr2b C 0 C 0 s calJac3.chr6 146759647 13 + 158406734 TTTACTGAGATAT- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28837014 13 - 32117204 TTTGCTAAGGTTT- i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1068027 13 - 2169676 -TCAATACAAATTT i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7000 54 + 18451090 I e canFam3.chr25 42512469 57 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15240 200 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e equCab2.chr6 17877174 26 + 84719076 I e nomLeu2.GL397366 3669296 58 + 6458163 I e gorGor3.chr2B 119485361 60 + 131632457 I e panTro4.chr2B 235528664 58 + 247518478 I e hg19.chr2 231150581 58 + 243199373 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-6422.000000 s mm10.chr1_GL456221_random 133767 27 + 206961 ----AAACACAAAAGAAAGCAAAACCAAA--------------AA s rn5.chr9 92378017 41 + 121549591 ----AaaaccaaaagaaagcaaaacaaaacaaaacaaaGAAAAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163701 13 - 10418462 -----------CGAGGAATCTA---------------------AA i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122707304 13 + 135000294 -----------TGAGGAGCCTA---------------------GA i ponAbe2.chr2b C 0 I 1 s calJac3.chr6 146759660 13 + 158406734 -----------TGATGAGCTTA---------------------GA i calJac3.chr6 C 0 I 15 s otoGar3.GL873532 28837027 13 - 32117204 -----------TGAGGAACCTA---------------------GA i otoGar3.GL873532 C 0 I 1 s turTru2.JH486691 15440 19 - 63237 -----AAGTTTTGAGGAACACA---------------------GA i turTru2.JH486691 I 200 C 0 s ailMel1.GL192536.1 1068040 24 - 2169676 TGCTAAGGTTTTGAGGAACATA---------------------AA i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7000 54 + 18451090 I e canFam3.chr25 42512469 57 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94076762 906 + 106825570 I e equCab2.chr6 17877174 26 + 84719076 I e nomLeu2.GL397366 3669296 58 + 6458163 I e gorGor3.chr2B 119485361 60 + 131632457 I e panTro4.chr2B 235528664 58 + 247518478 I e hg19.chr2 231150581 58 + 243199373 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-212.000000 s mm10.chr1_GL456221_random 133794 1 + 206961 C s rn5.chr9 92378058 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163714 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122707318 1 + 135000294 C i ponAbe2.chr2b I 1 I 11 s calJac3.chr6 146759688 1 + 158406734 T i calJac3.chr6 I 15 C 0 s saiBol1.JH378144 7054 1 + 18451090 T i saiBol1.JH378144 I 54 C 0 s otoGar3.GL873532 28837041 1 - 32117204 C i otoGar3.GL873532 I 1 I 14 s turTru2.JH486691 15459 1 - 63237 T i turTru2.JH486691 C 0 I 157 s ailMel1.GL192536.1 1068064 1 - 2169676 T i ailMel1.GL192536.1 C 0 I 14 e canFam3.chr25 42512469 57 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94076762 906 + 106825570 I e equCab2.chr6 17877174 26 + 84719076 I e nomLeu2.GL397366 3669296 58 + 6458163 I e gorGor3.chr2B 119485361 60 + 131632457 I e panTro4.chr2B 235528664 58 + 247518478 I e hg19.chr2 231150581 58 + 243199373 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=81240.000000 s mm10.chr1_GL456221_random 133795 28 + 206961 ACTACTCAAGCTTACTTATCAATTTGAG s rn5.chr9 92378059 27 + 121549591 ACTACTCAA-CTATCTTGTCAATTTGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163715 21 - 10418462 CCTCCTTAA--TTTTTTACTAGT----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150639 25 + 243199373 ACTCATCAAGCT---TAGTCAATTGGAG i hg19.chr2 I 58 C 0 s panTro4.chr2B 235528722 25 + 247518478 ACTCATCAAGCT---TAGTCAATTGGAG i panTro4.chr2B I 58 C 0 s gorGor3.chr2B 119485421 25 + 131632457 ACTCATCAAGCT---TAGTCAATTGGAG i gorGor3.chr2B I 60 C 0 s ponAbe2.chr2b 122707330 25 + 135000294 ACTAGTCAAACT---TAGTCAATTTCAG i ponAbe2.chr2b I 11 C 0 s nomLeu2.GL397366 3669354 25 + 6458163 ACTCGTCAAGCT---TAGTCAATTGGAG i nomLeu2.GL397366 I 58 C 0 s calJac3.chr6 146759689 25 + 158406734 ACTTGTCAAGCT---TAGTCAATTTGAG i calJac3.chr6 C 0 I 19 s saiBol1.JH378144 7055 25 + 18451090 ACTAGTCAAACT---TAGTCAATTTGAG i saiBol1.JH378144 C 0 I 19 s otoGar3.GL873532 28837056 28 - 32117204 ACTAGACAAGTTTCGTAGTCACTTTGAG i otoGar3.GL873532 I 14 C 0 s canFam3.chr25 42512526 28 + 51628933 ACCAGCCAAAGTTACCTGTCAATTTGAG i canFam3.chr25 I 57 I 17 s ailMel1.GL192536.1 1068079 28 - 2169676 CCTAGCCAAAGTTACCAGTCAGTTTGAG i ailMel1.GL192536.1 I 14 I 17 s equCab2.chr6 17877200 28 + 84719076 GCTAGTCAAGCTTACCAGTCAATTTGAG i equCab2.chr6 I 26 I 17 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15460 157 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 50441 1089 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=20428.000000 s mm10.chr1_GL456221_random 133823 3 + 206961 AGT s rn5.chr9 92378086 3 + 121549591 AAT i rn5.chr9 C 0 C 0 s hg19.chr2 231150664 3 + 243199373 AGC i hg19.chr2 C 0 I 18 s panTro4.chr2B 235528747 3 + 247518478 AGC i panTro4.chr2B C 0 I 18 s gorGor3.chr2B 119485446 3 + 131632457 AGC i gorGor3.chr2B C 0 I 18 s ponAbe2.chr2b 122707355 3 + 135000294 AGC i ponAbe2.chr2b C 0 I 20 s nomLeu2.GL397366 3669379 3 + 6458163 AGC i nomLeu2.GL397366 C 0 I 18 s papHam1.scaffold13267 51530 3 + 66950 AGC i papHam1.scaffold13267 I 1089 I 156 s calJac3.chr6 146759733 3 + 158406734 AGC i calJac3.chr6 I 19 C 0 s saiBol1.JH378144 7099 3 + 18451090 AGC i saiBol1.JH378144 I 19 C 0 s otoGar3.GL873532 28837084 3 - 32117204 AGC i otoGar3.GL873532 C 0 I 18 s canFam3.chr25 42512571 3 + 51628933 AGT i canFam3.chr25 I 17 C 0 s ailMel1.GL192536.1 1068124 3 - 2169676 AGC i ailMel1.GL192536.1 I 17 C 0 s equCab2.chr6 17877245 3 + 84719076 AGC i equCab2.chr6 I 17 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163736 0 - 10418462 C e turTru2.JH486691 15460 157 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=230037.000000 s mm10.chr1_GL456221_random 133826 78 + 206961 AAAGCTGTTAGGAGCAAGAG-CATAAATTG----TATTTATACCACCAATGT----------GTCTCTCCTAATATCTTCTTCTTAGTTGAAC s rn5.chr9 92378089 47 + 121549591 AAAACTGTTAGGAGCAAGCG-CGTAAA----------------CACC-----------------------------TTTCCTCTGAGTTGAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163736 16 - 10418462 -----------------------CAAA----------------------------------------------------TTTCTTAGTTGA-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150685 93 + 243199373 AAACTCATTATAAGCAGGGGTTGTAAGTTGATTGTATTCATATCATAGATCTTATCTGCCCAGTTTCTAAAATAGTTTTCCTCTGTGTTTTAT i hg19.chr2 I 18 C 0 s panTro4.chr2B 235528768 93 + 247518478 AAACTCATTATAAACAGGGGTTGTAAGTTGATTGTATTCATATCATAGATCTTATCTGCCCAGTTTCTAAAATAGTTTTCCTCTGTGTTTTAT i panTro4.chr2B I 18 C 0 s gorGor3.chr2B 119485467 93 + 131632457 AAACTCATTGTAAGCAGGGGTTGTAAGTTGATTGTATTCATATCATAGATCTTATCTGCCCAGTTTCTAAAATAGTTTTCCTCTGTGTTTTAT i gorGor3.chr2B I 18 C 0 s ponAbe2.chr2b 122707378 93 + 135000294 AAACCCATTAGAAGCCAGGGTTGTAAGTTGATTGTATTCATATCATAGATCTTATCTGTCCAGGTTCTAAAGTTGTTTTCCTCTGTGTTTTAT i ponAbe2.chr2b I 20 C 0 s nomLeu2.GL397366 3669400 93 + 6458163 AAACTCATTATAAGCAAGGGTTGTAAGTTGATTGTATTCATATCATAGATCTTATCTGCCCATTTTCTAAAATAATTTTCCTCTGTGTTTTAT i nomLeu2.GL397366 I 18 C 0 s calJac3.chr6 146759736 69 + 158406734 AAACCCATTAGAAGCCAAGGTTGTAAGTTGATTATATTCATATAATAGATCTTATCTGCCCA------------------------GTTTTAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7102 91 + 18451090 AAACCCATTATAAGCCAGGGTTGTGAGTTGTTTGTATTCATAT--CAGATCTTATCTTTCCAGGTTCTAAAATTGTTTTCCTCTGTGTTTTAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837105 93 - 32117204 AAACCCATTTGGACCCAGGGTTGTGTGCTGTTTATATTTATATCATAGAACTTATCTGCCCAGGTTCTAAAGTACTTGTCCACTTATTTTTTT i otoGar3.GL873532 I 18 C 0 s canFam3.chr25 42512574 90 + 51628933 AAACTCATTTTGAGCCAGGGTTATAAATTGTTTGCATTTATATCATAGTTTTTATCTGCCCAGAACTTAAAATCCTTTT---CTGAGTTTTAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068127 91 - 2169676 AAACCCATTTGGAGCCAGGGTTATAAAGGGTTGGTGTTTATATCATAGTTTTTATCTGCTCAGGACCTAAAATCTTTTT--CCCGTGTTCTAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877248 92 + 84719076 AAACTTGTTTGGAGCCACGATTATAAATTGTTTGTATTTATATCATAGTTCTTATCTGCCCAAGGCCT-AAATCTTTTTGCTCTGAGTTTTAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15460 157 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51533 156 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-9415.000000 s mm10.chr1_GL456221_random 133904 5 + 206961 CGTAT s rn5.chr9 92378136 5 + 121549591 TGTAT i rn5.chr9 C 0 C 0 s hg19.chr2 231150778 5 + 243199373 CTCAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528861 5 + 247518478 CTCAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485560 5 + 131632457 CTCAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707471 5 + 135000294 CTGAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669493 5 + 6458163 CTCAT i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146759805 5 + 158406734 ATGAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7193 5 + 18451090 CTGAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837198 5 - 32117204 CTGAT i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 15617 4 - 63237 CTGT- i turTru2.JH486691 I 157 I 28 s canFam3.chr25 42512664 4 + 51628933 CTAC- i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1068218 4 - 2169676 CTGT- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17877340 4 + 84719076 CTCC- i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163752 0 - 10418462 C e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51533 156 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=111327.000000 s mm10.chr1_GL456221_random 133909 26 + 206961 TTTTATGGAAATACTTTTCTCTTATA s rn5.chr9 92378141 26 + 121549591 TTTTATGGAAATGCTTTTCTCTTACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163752 21 - 10418462 ---TTTGAGAGCAGTGAAATCTCA-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150783 26 + 243199373 TTTCCTGGAAATTCCTTTGCCTCAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528866 26 + 247518478 TTTCCTGGAAATTCCTTTGCCTTAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485565 26 + 131632457 TTTCCTGGAAATTCCTTTGCCTTAAA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707476 26 + 135000294 TTTCCTGGAAATTCCTTTGCCTTAAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669498 26 + 6458163 TTTCCTGGAAATTTCTTTGCCTTAAA i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146759810 25 + 158406734 TTTCCTGGAAATTCC-TTGCCTTACA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7198 26 + 18451090 TTTCCTGGAAATTCCTTTGCCTTAAA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837203 26 - 32117204 TTTCATGGAAATTCCTTTGCCTGGAC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512669 26 + 51628933 GTTTGTGGAAATTTCTTTACCTTGCA i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1068223 25 - 2169676 -TTCATGGAAATTTCTTTACCTtgta i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17877345 26 + 84719076 TTTCCTGGAAATTCCTTTACCTTATA i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15621 28 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51533 156 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=6695.000000 s mm10.chr1_GL456221_random 133935 1 + 206961 T s rn5.chr9 92378167 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231150809 1 + 243199373 T i hg19.chr2 C 0 I 1 s panTro4.chr2B 235528892 1 + 247518478 T i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119485591 1 + 131632457 T i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122707502 1 + 135000294 T i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3669524 1 + 6458163 T i nomLeu2.GL397366 C 0 I 1 s calJac3.chr6 146759835 1 + 158406734 T i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 7224 1 + 18451090 T i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28837229 1 - 32117204 T i otoGar3.GL873532 C 0 I 1 s turTru2.JH486691 15649 1 - 63237 T i turTru2.JH486691 I 28 I 7 s canFam3.chr25 42512695 1 + 51628933 C i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1068248 1 - 2169676 t i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17877371 1 + 84719076 T i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163773 0 - 10418462 C e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51533 156 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=10362.000000 s mm10.chr1_GL456221_random 133936 6 + 206961 ATTGGT- s rn5.chr9 92378168 6 + 121549591 ATCAGT- i rn5.chr9 C 0 C 0 s hg19.chr2 231150811 6 + 243199373 ATTGTT- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235528894 6 + 247518478 ATTGTT- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119485593 6 + 131632457 ATTGTT- i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122707504 6 + 135000294 ATTGGC- i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3669526 6 + 6458163 ATTGTT- i nomLeu2.GL397366 I 1 C 0 s calJac3.chr6 146759837 6 + 158406734 ATTGGT- i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 7226 6 + 18451090 ATTGGG- i saiBol1.JH378144 I 1 C 0 s canFam3.chr25 42512697 7 + 51628933 AATGGTT i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1068250 7 - 2169676 attggtt i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17877373 7 + 84719076 ATTGGTT i equCab2.chr6 I 1 C 0 e otoGar3.GL873532 28837230 1 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163773 0 - 10418462 C e turTru2.JH486691 15650 7 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51533 156 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=4638.000000 s mm10.chr1_GL456221_random 133942 1 + 206961 T s rn5.chr9 92378174 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231150817 1 + 243199373 T i hg19.chr2 C 0 I 1 s panTro4.chr2B 235528900 1 + 247518478 T i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119485599 1 + 131632457 T i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122707510 1 + 135000294 G i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3669532 1 + 6458163 T i nomLeu2.GL397366 C 0 I 1 s calJac3.chr6 146759843 1 + 158406734 T i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 7232 1 + 18451090 T i saiBol1.JH378144 C 0 I 1 s turTru2.JH486691 15657 1 - 63237 T i turTru2.JH486691 I 7 I 22 s canFam3.chr25 42512704 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068257 1 - 2169676 t i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877380 1 + 84719076 T i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28837230 1 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163773 0 - 10418462 C e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51533 156 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=6695.000000 s mm10.chr1_GL456221_random 133943 1 + 206961 A s rn5.chr9 92378175 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231150819 1 + 243199373 A i hg19.chr2 I 1 C 0 s panTro4.chr2B 235528902 1 + 247518478 A i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119485601 1 + 131632457 A i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122707512 1 + 135000294 A i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3669534 1 + 6458163 A i nomLeu2.GL397366 I 1 C 0 s papHam1.scaffold13267 51689 1 + 66950 A i papHam1.scaffold13267 I 156 I 204 s calJac3.chr6 146759845 1 + 158406734 A i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 7234 1 + 18451090 A i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 28837231 1 - 32117204 G i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42512705 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068258 1 - 2169676 a i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877381 1 + 84719076 A i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163773 0 - 10418462 C e turTru2.JH486691 15658 22 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=50441.000000 s mm10.chr1_GL456221_random 133944 13 + 206961 TTAAAATGGCCAG s rn5.chr9 92378176 13 + 121549591 TTAAAATCTGGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163773 11 - 10418462 --AAAGCAAACTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150820 13 + 243199373 TTAAAATGGCTGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528903 13 + 247518478 TTAAAATGGCTGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485602 13 + 131632457 TTAAAATGGCTGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707513 13 + 135000294 TTAAAATGGCTGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669535 13 + 6458163 TTAAAATGGCTGG i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146759846 13 + 158406734 TTAAAATGGCTGG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7235 13 + 18451090 TTAAAATGTATGG i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42512706 13 + 51628933 TTAAAATGGCCAG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068259 13 - 2169676 ttaaaatggccag i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877382 12 + 84719076 TTAAAATGGCT-G i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28837232 0 - 32117204 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15658 22 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-2911.000000 s mm10.chr1_GL456221_random 133957 4 + 206961 ATC-------------T s rn5.chr9 92378189 4 + 121549591 ACT-------------C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163784 4 - 10418462 ACT-------------T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150833 12 + 243199373 ACCTGGTAAAT-----T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528916 12 + 247518478 ACCCGGTAAAT-----T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485615 12 + 131632457 ACCCGGTAAAT-----T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707526 12 + 135000294 GCCTGGTAAAT-----T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669548 12 + 6458163 ACCTGGTAAAT-----T i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146759859 17 + 158406734 ACCTGGCAAATTTCCCT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7248 12 + 18451090 ACCTGGTAAAT-----T i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837232 7 - 32117204 -----TTAAAT-----T i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 15680 4 - 63237 --------AAT-----T i turTru2.JH486691 I 22 I 20 s canFam3.chr25 42512719 4 + 51628933 --------ATT-----T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068272 4 - 2169676 --------act-----t i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877394 4 + 84719076 --------GCT-----T i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=34864.000000 s mm10.chr1_GL456221_random 133961 20 + 206961 --------GGAAGAGGAAAGAAGATTTA s rn5.chr9 92378193 16 + 121549591 --------AGAGGCAGAAAGCAGA---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163788 9 - 10418462 --------GGAACCAGA----------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150845 20 + 243199373 --------GTAAGCCGAATACAGGTTTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528928 20 + 247518478 --------GTAAGCCGAATACAGGTTTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485627 20 + 131632457 --------GTAAGCCGAATACAGGTTTA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707538 20 + 135000294 --------GTAAGCAGAATACAGGTTTA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669560 20 + 6458163 --------GTAAGCCGAATACAGGTTTA i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146759876 18 + 158406734 --------GTGAGC-AGATACA-GGTTA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7260 20 + 18451090 --------GTGAACAAAATACCTGTTTA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837239 20 - 32117204 --------GTAAGCAGAACACAAGTTTA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512723 28 + 51628933 GGTAAATTATAAGTAGAAAACAAGTTCA i canFam3.chr25 C 0 I 4 s ailMel1.GL192536.1 1068276 28 - 2169676 ggtaaattacaagaagaaaacaagttca i ailMel1.GL192536.1 C 0 I 5 s equCab2.chr6 17877398 27 + 84719076 GGAGAATC-CAAGTGGAAAGCAAGTTCA i equCab2.chr6 C 0 I 4 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15684 20 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=10057.000000 s mm10.chr1_GL456221_random 133981 2 + 206961 CT s hg19.chr2 231150865 2 + 243199373 TT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528948 2 + 247518478 TT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485647 2 + 131632457 TT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707558 2 + 135000294 TT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669580 2 + 6458163 TT i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146759894 2 + 158406734 TT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7280 2 + 18451090 TT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837259 2 - 32117204 TC i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 15704 2 - 63237 TT i turTru2.JH486691 I 20 I 573 s canFam3.chr25 42512755 2 + 51628933 TT i canFam3.chr25 I 4 C 0 s ailMel1.GL192536.1 1068309 2 - 2169676 tt i ailMel1.GL192536.1 I 5 C 0 s equCab2.chr6 17877429 2 + 84719076 CT i equCab2.chr6 I 4 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163797 0 - 10418462 C e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I e rn5.chr9 92378209 0 + 121549591 C a score=2206.000000 s mm10.chr1_GL456221_random 133983 2 + 206961 CT s hg19.chr2 231150867 2 + 243199373 CT i hg19.chr2 C 0 I 2 s panTro4.chr2B 235528950 2 + 247518478 CT i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119485649 2 + 131632457 CT i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122707560 2 + 135000294 TT i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3669582 2 + 6458163 CT i nomLeu2.GL397366 C 0 I 2 s calJac3.chr6 146759896 2 + 158406734 CT i calJac3.chr6 C 0 I 4 s saiBol1.JH378144 7282 2 + 18451090 CT i saiBol1.JH378144 C 0 I 4 s otoGar3.GL873532 28837261 2 - 32117204 AC i otoGar3.GL873532 C 0 I 3 s canFam3.chr25 42512757 2 + 51628933 CA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068311 2 - 2169676 ca i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877431 2 + 84719076 CA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163797 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I e rn5.chr9 92378209 0 + 121549591 C a score=3461.000000 s mm10.chr1_GL456221_random 133985 2 + 206961 CA s hg19.chr2 231150871 2 + 243199373 CA i hg19.chr2 I 2 I 2 s panTro4.chr2B 235528954 2 + 247518478 CA i panTro4.chr2B I 2 I 2 s gorGor3.chr2B 119485653 2 + 131632457 CA i gorGor3.chr2B I 2 I 2 s ponAbe2.chr2b 122707564 2 + 135000294 CA i ponAbe2.chr2b I 2 I 2 s nomLeu2.GL397366 3669586 2 + 6458163 CA i nomLeu2.GL397366 I 2 I 2 s calJac3.chr6 146759902 2 + 158406734 TT i calJac3.chr6 I 4 C 0 s saiBol1.JH378144 7288 2 + 18451090 CT i saiBol1.JH378144 I 4 C 0 s otoGar3.GL873532 28837266 2 - 32117204 CT i otoGar3.GL873532 I 3 C 0 s canFam3.chr25 42512759 2 + 51628933 CT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068313 2 - 2169676 ct i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877433 2 + 84719076 CT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163797 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I e rn5.chr9 92378209 0 + 121549591 C a score=44716.000000 s mm10.chr1_GL456221_random 133987 8 + 206961 GTCCTTTC s hg19.chr2 231150875 8 + 243199373 GCCCTTTC i hg19.chr2 I 2 I 2 s panTro4.chr2B 235528958 8 + 247518478 GCCCTTTC i panTro4.chr2B I 2 I 2 s gorGor3.chr2B 119485657 8 + 131632457 GCCCTTTC i gorGor3.chr2B I 2 I 2 s ponAbe2.chr2b 122707568 8 + 135000294 GCCCTTTC i ponAbe2.chr2b I 2 I 2 s nomLeu2.GL397366 3669590 8 + 6458163 GCCCTTTC i nomLeu2.GL397366 I 2 I 2 s calJac3.chr6 146759904 8 + 158406734 GCCTTTTC i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 7290 8 + 18451090 GCCCTTTC i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28837268 8 - 32117204 GCCCTTTC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512761 8 + 51628933 GCCCTTTC i canFam3.chr25 C 0 I 4 s ailMel1.GL192536.1 1068315 8 - 2169676 gccttttc i ailMel1.GL192536.1 C 0 I 4 s equCab2.chr6 17877435 8 + 84719076 GACCTTTC i equCab2.chr6 C 0 I 3 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163797 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I e rn5.chr9 92378209 0 + 121549591 C a score=-730.000000 s mm10.chr1_GL456221_random 133995 1 + 206961 C s rn5.chr9 92378209 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163797 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s calJac3.chr6 146759913 1 + 158406734 A i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 7299 1 + 18451090 C i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 28837276 1 - 32117204 A i otoGar3.GL873532 C 0 I 1 e ponAbe2.chr2b 122707576 2 + 135000294 I e canFam3.chr25 42512769 4 + 51628933 I e ailMel1.GL192536.1 1068323 4 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e equCab2.chr6 17877443 3 + 84719076 I e nomLeu2.GL397366 3669598 2 + 6458163 I e gorGor3.chr2B 119485665 2 + 131632457 I e panTro4.chr2B 235528966 2 + 247518478 I e hg19.chr2 231150883 2 + 243199373 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=4016.000000 s mm10.chr1_GL456221_random 133996 2 + 206961 TT s rn5.chr9 92378210 2 + 121549591 CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163798 2 - 10418462 TT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150885 2 + 243199373 GT i hg19.chr2 I 2 C 0 s panTro4.chr2B 235528968 2 + 247518478 GT i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119485667 2 + 131632457 GT i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122707578 2 + 135000294 GT i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3669600 2 + 6458163 GT i nomLeu2.GL397366 I 2 C 0 s calJac3.chr6 146759914 2 + 158406734 GT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7300 2 + 18451090 GT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837278 2 - 32117204 TT i otoGar3.GL873532 I 1 C 0 e canFam3.chr25 42512769 4 + 51628933 I e ailMel1.GL192536.1 1068323 4 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e equCab2.chr6 17877443 3 + 84719076 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=20608.000000 s mm10.chr1_GL456221_random 133998 11 + 206961 -CCCCTCTTTTG s rn5.chr9 92378212 11 + 121549591 -TTCCCCTTCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163800 11 - 10418462 -GCACACTCTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150887 11 + 243199373 -CCTCCTCCTAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528970 11 + 247518478 -CCTCCTCCTAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485669 11 + 131632457 -CCTCCTCCTAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707580 11 + 135000294 -CCTCCTCCTAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669602 11 + 6458163 -CCTCCTCCTAG i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146759916 11 + 158406734 -CTTCCTCCTAG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7302 11 + 18451090 -CCTCCTCCTAG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837280 11 - 32117204 -CCTCATTCTAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512773 10 + 51628933 -CTACCTTCTG- i canFam3.chr25 I 4 I 1 s ailMel1.GL192536.1 1068327 10 - 2169676 -ctgccttctg- i ailMel1.GL192536.1 I 4 I 1 s equCab2.chr6 17877446 11 + 84719076 CCTATCCCCTA- i equCab2.chr6 I 3 I 1 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212434315 696 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=6392.000000 s mm10.chr1_GL456221_random 134009 1 + 206961 A s rn5.chr9 92378223 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163811 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150898 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528981 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485680 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707591 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669613 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146759927 1 + 158406734 A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7313 1 + 18451090 A i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837291 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212435011 1 + 221441202 A i felCat5.chrC1 I 696 I 50 s canFam3.chr25 42512784 1 + 51628933 A i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1068338 1 - 2169676 a i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17877458 1 + 84719076 A i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=77323.000000 s mm10.chr1_GL456221_random 134010 19 + 206961 TGAGTTCTTTCTCATCTT-G s rn5.chr9 92378224 19 + 121549591 AGAGTTCTTTCTTACCTT-G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163812 17 - 10418462 TGTTTCTATTCTCATCT--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150899 19 + 243199373 TGAGTTCTTTCCTGTCTT-G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235528982 19 + 247518478 TGAATTCTTTCCTGTCTT-G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485681 19 + 131632457 TGAGTTCTTTCCTGTCTT-G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707592 19 + 135000294 TGAGTTCTTTCCTGTCCT-G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669614 20 + 6458163 TGAGTTATTTCCTATCTTGG i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146759928 19 + 158406734 TGAGTTATTTCCTGTCTT-G i calJac3.chr6 C 0 I 93710 s saiBol1.JH378144 7314 19 + 18451090 TAAGTTATTTCCTGTCTT-G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837292 18 - 32117204 TGAGTTCTTT-CTATCTT-G i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512785 18 + 51628933 TGAGTT-TTTCCTGTCTT-G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068339 18 - 2169676 tgagtt-tttcccgtctt-g i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877459 16 + 84719076 TGAG---TTTCCTGTCTT-G i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212435012 50 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=66670.000000 s mm10.chr1_GL456221_random 134029 32 + 206961 GATAGGCCCTGTAGCTTTCCGGGTCCATTT-TG s rn5.chr9 92378243 33 + 121549591 GACAGGCCCTGTAGCTCTCCAGGTCCATTTCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163829 11 - 10418462 -----GCCC--------------ACCACCT--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150918 33 + 243199373 AGCAAGCTCTGTCGCTTTCTTGTTCCCTTTTAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529001 33 + 247518478 AGCAAGCTCTATCGCTTTCTTGTTCCCTTTTAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485700 33 + 131632457 AGCAAGCTCTATCGCTTTCTTGTTCCCTTTTAA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707611 33 + 135000294 AGCAAGTCCTATCGCTTTCCTGTtcacttttca i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669634 33 + 6458163 AGCAAGCACTGTCACTTTCTTGTTCCCTTTTAA i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146853657 33 + 158406734 AGCAAACCCTATCACTTTCCTCTTCCCTTTTAA i calJac3.chr6 I 93710 C 0 s saiBol1.JH378144 7333 31 + 18451090 AGCAAGCCCTATCACTTTCCTCTTCCCTTTT-- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837310 33 - 32117204 GGCAGGCCTCGCAGCTTTCCTGTTGCCGGTTAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512803 30 + 51628933 GGCTTGCCTCATAGTTTTCCTGTTCCCTTG--- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068357 19 - 2169676 ggc-----------atttcctgttctcttg--- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877475 30 + 84719076 GGCAAGCCTTGTAGCCTTTCTCTTTCCTTG--- i equCab2.chr6 C 0 I 3 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212435012 50 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=5250.000000 s mm10.chr1_GL456221_random 134061 4 + 206961 CAGC s rn5.chr9 92378276 4 + 121549591 CAAC i rn5.chr9 C 0 C 0 s hg19.chr2 231150951 4 + 243199373 AAAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529034 4 + 247518478 AAAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485733 4 + 131632457 AAAC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707644 4 + 135000294 caac i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669667 4 + 6458163 AAAC i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146853690 4 + 158406734 CAAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7364 3 + 18451090 -AAC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837343 4 - 32117204 TAGC i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212435062 1 + 221441202 ---C i felCat5.chrC1 I 50 C 0 s canFam3.chr25 42512833 2 + 51628933 --TC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068376 2 - 2169676 --tc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877508 1 + 84719076 ---C i equCab2.chr6 I 3 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163840 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 7062 990 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=7847.000000 s mm10.chr1_GL456221_random 134065 1 + 206961 A s rn5.chr9 92378280 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231150955 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529038 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485737 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707648 1 + 135000294 a i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669671 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146853694 1 + 158406734 A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7367 1 + 18451090 A i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837347 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 8052 1 + 11994 G i vicPac1.scaffold_13731 I 990 I 1227 s felCat5.chrC1 212435063 1 + 221441202 A i felCat5.chrC1 C 0 I 153 s canFam3.chr25 42512835 1 + 51628933 A i canFam3.chr25 C 0 I 14 s ailMel1.GL192536.1 1068378 1 - 2169676 a i ailMel1.GL192536.1 C 0 I 14 s equCab2.chr6 17877509 1 + 84719076 A i equCab2.chr6 C 0 I 12 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163840 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e papHam1.scaffold13267 51690 204 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=4132.000000 s mm10.chr1_GL456221_random 134066 2 + 206961 GC s rn5.chr9 92378281 2 + 121549591 GT i rn5.chr9 C 0 C 0 s hg19.chr2 231150956 2 + 243199373 GT i hg19.chr2 C 0 I 1 s panTro4.chr2B 235529039 2 + 247518478 AT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119485738 2 + 131632457 AT i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122707649 2 + 135000294 at i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3669672 2 + 6458163 GT i nomLeu2.GL397366 C 0 I 1 s calJac3.chr6 146853695 2 + 158406734 AT i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 7368 2 + 18451090 AT i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28837348 2 - 32117204 GT i otoGar3.GL873532 C 0 I 1 e canFam3.chr25 42512836 14 + 51628933 I e ailMel1.GL192536.1 1068379 14 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163840 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e equCab2.chr6 17877510 12 + 84719076 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212435064 153 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 11692 520 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=5005.000000 s mm10.chr1_GL456221_random 134068 1 + 206961 A s rn5.chr9 92378283 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231150959 1 + 243199373 A i hg19.chr2 I 1 C 0 s panTro4.chr2B 235529042 1 + 247518478 A i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119485741 1 + 131632457 A i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122707652 1 + 135000294 a i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3669675 1 + 6458163 A i nomLeu2.GL397366 I 1 C 0 s calJac3.chr6 146853698 1 + 158406734 A i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 7371 1 + 18451090 A i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 28837351 1 - 32117204 A i otoGar3.GL873532 I 1 C 0 s dasNov3.JH581855 12212 1 - 513109 A i dasNov3.JH581855 I 520 I 46 e canFam3.chr25 42512836 14 + 51628933 I e ailMel1.GL192536.1 1068379 14 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163840 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e equCab2.chr6 17877510 12 + 84719076 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212435064 153 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=132045.000000 s mm10.chr1_GL456221_random 134069 42 + 206961 GTTTTCCACAGGAGAAGCTGAGAGCCCTTTCTGACCTGGTAC s rn5.chr9 92378284 42 + 121549591 GTGTTCCACAGGAGAAGCTGAGAGCCCTTTCTGACCTGATAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163840 8 - 10418462 -----------------------GACCTTTC----------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231150960 40 + 243199373 GAGTCTCATTTCAGTAGTTGGGA--CCTTTCTGACCTAGTAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529043 40 + 247518478 Gagtctcatttcagtagttggga--cctttctgacctagtat i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485742 40 + 131632457 GAGTCTCATTTCAGTAGTTGGGA--CCTTTCTGACCTAGTGT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707653 41 + 135000294 gagtctcatttcagtaattgagag-tctttctgaccaagtat i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669676 40 + 6458163 Gagtctcatttcagtagttgaga--cctttctgacctattat i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146853699 41 + 158406734 GAGTCTCATTTCAGTAG-TGAGGATCCTTTCTGACCAAGTAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7372 42 + 18451090 Gagtctcatttcagtagttgaggattctttctgaccaagtat i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837352 41 - 32117204 GAGTCTCATTTCAGTAC-TGAGAGTCCTTCCTGATCGAATAT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512850 37 + 51628933 -----TCTCTTCAATAGTTGAGTGTCCTTTCTGGACTAGTGT i canFam3.chr25 I 14 C 0 s ailMel1.GL192536.1 1068393 37 - 2169676 -----cctctccagtagttgagggttctttctggactagtac i ailMel1.GL192536.1 I 14 C 0 s equCab2.chr6 17877522 37 + 84719076 -----TCTTTCCAGTAGTTGAGAGTCCTTTCTGGCCTAATAT i equCab2.chr6 I 12 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212435064 153 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12213 46 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=5362.000000 s mm10.chr1_GL456221_random 134111 1 + 206961 C s rn5.chr9 92378326 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231151000 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529083 1 + 247518478 t i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485782 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707694 1 + 135000294 t i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669716 1 + 6458163 t i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146853740 1 + 158406734 T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7414 1 + 18451090 t i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837393 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512887 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068430 1 - 2169676 c i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877559 1 + 84719076 T i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 12259 1 - 513109 T i dasNov3.JH581855 I 46 I 35 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163848 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212435064 153 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-7806.000000 s mm10.chr1_GL456221_random 134112 12 + 206961 CAATTTTTGAGA s rn5.chr9 92378327 12 + 121549591 CAATTTTTGAGA i rn5.chr9 C 0 C 0 s hg19.chr2 231151001 1 + 243199373 -A---------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529084 2 + 247518478 aa---------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485783 2 + 131632457 AA---------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707695 2 + 135000294 ga---------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669717 2 + 6458163 aa---------- i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146853741 2 + 158406734 AA---------- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7415 2 + 18451090 aa---------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837394 2 - 32117204 AA---------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512888 2 + 51628933 AA---------- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068431 2 - 2169676 ga---------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877560 2 + 84719076 AA---------- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163848 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212435064 153 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12260 35 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=15055.000000 s mm10.chr1_GL456221_random 134124 58 + 206961 -----CAGGCAGACCATGTCTGAGAGA-ACAAAGAGCAAAGGAATGAACCTTCATGCTTTCTCC s rn5.chr9 92378339 58 + 121549591 -----CAGTCAGACCATGTCTGAGAGA-ACGAACAGCAAAGGAATGAACCTTTATGCGTTCTCC i rn5.chr9 C 0 C 0 s hg19.chr2 231151002 18 + 243199373 ----------------------------------------------AACTACAATGTCTTCCCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529086 18 + 247518478 ----------------------------------------------aactacaatgtcttcccc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485785 18 + 131632457 ----------------------------------------------AACTACAATGTCTTCCCC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707697 18 + 135000294 ----------------------------------------------aattccaatttcctcccc i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669719 18 + 6458163 ----------------------------------------------aactccaatgtcctcccc i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146853743 18 + 158406734 ----------------------------------------------AATTCCAGTGTCCTCCCC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7417 18 + 18451090 ----------------------------------------------aattccaatgccctcccc i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837396 18 - 32117204 ----------------------------------------------AACTTCAATATTTCCTTC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512890 18 + 51628933 ----------------------------------------------ACCTTCAATATTTTCTCC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068433 18 - 2169676 ----------------------------------------------aacttcaatattttctcc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877562 18 + 84719076 ----------------------------------------------AACTTCATTATTTTCTCC i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 12295 61 - 513109 CAGTCTGGACAAGCCCCTTCGGGGAAATGTGATGAGGGGAGGGGGCATCCTCACTTTCTTC--- i dasNov3.JH581855 I 35 I 1807 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163848 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212435064 153 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=2185.000000 s mm10.chr1_GL456221_random 134182 1 + 206961 A s rn5.chr9 92378397 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231151020 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529104 1 + 247518478 a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485803 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707715 1 + 135000294 a i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669737 1 + 6458163 a i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146853761 1 + 158406734 C i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7435 1 + 18451090 a i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837414 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512908 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068451 1 - 2169676 a i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877580 1 + 84719076 G i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163848 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51690 204 + 66950 I e felCat5.chrC1 212435064 153 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=15313.000000 s mm10.chr1_GL456221_random 134183 3 + 206961 ATT s rn5.chr9 92378398 3 + 121549591 ATT i rn5.chr9 C 0 C 0 s hg19.chr2 231151021 3 + 243199373 GTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529105 3 + 247518478 gtt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485804 3 + 131632457 GTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707716 3 + 135000294 gct i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669738 3 + 6458163 gtt i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold13267 51894 3 + 66950 GTT i papHam1.scaffold13267 I 204 C 0 s calJac3.chr6 146853762 3 + 158406734 GTt i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7436 3 + 18451090 gtt i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837415 3 - 32117204 ATT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512909 3 + 51628933 TTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068452 3 - 2169676 gtt i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877581 3 + 84719076 TTT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163848 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e rheMac3.chr12 94076762 906 + 106825570 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212435064 153 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=48688.000000 s mm10.chr1_GL456221_random 134186 6 + 206961 TAAAGC s rn5.chr9 92378401 6 + 121549591 TAAAGC i rn5.chr9 C 0 C 0 s hg19.chr2 231151024 6 + 243199373 TAAAGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529108 6 + 247518478 taaagc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485807 6 + 131632457 TAAAGC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707719 6 + 135000294 taaagc i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669741 6 + 6458163 taaagc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94077668 6 + 106825570 taaagc i rheMac3.chr12 I 906 C 0 s papHam1.scaffold13267 51897 6 + 66950 TAAAGC i papHam1.scaffold13267 C 0 I 232 s calJac3.chr6 146853765 6 + 158406734 taaagt i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7439 6 + 18451090 taaagt i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837418 6 - 32117204 TAAAGA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512912 6 + 51628933 CAAAGC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068455 6 - 2169676 caaagc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877584 6 + 84719076 CAAAGC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4163848 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212435064 153 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=83287.000000 s mm10.chr1_GL456221_random 134192 18 + 206961 ACTTCCTCTCTGTTAGCC s rn5.chr9 92378407 18 + 121549591 AATTCCCCTCTGTCAGCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163848 15 - 10418462 --TTCCTCTTTGGTTGT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151030 18 + 243199373 ACCTTCGCTTCTTCAGCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529114 18 + 247518478 accttcgcttcttcagcc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485813 18 + 131632457 ACCTTCACTTCTTTAGCC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707725 18 + 135000294 accttccctccttcagcc i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669747 17 + 6458163 accttccctcc-taagcc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94077674 18 + 106825570 accttccctccttcagcc i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146853771 18 + 158406734 accttgcctccttcagcc i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7445 18 + 18451090 actttgcctccttcagcc i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837424 18 - 32117204 GCCCCCTGTCCTTCGTCC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512918 18 + 51628933 ACCTTTCTTCCTTCAGCC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068461 18 - 2169676 acctcccctccttcagcc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17877590 18 + 84719076 ACCTCCCCTCCTTCAGTC i equCab2.chr6 C 0 I 1310 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51903 232 + 66950 I e felCat5.chrC1 212435064 153 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=137103.000000 s mm10.chr1_GL456221_random 134210 53 + 206961 TGGGCAAACCC--CAGACTAGAACATGCA-A--------G------------TAGGGCTGGCACCACCCCGTTTTT s rn5.chr9 92378425 52 + 121549591 TGGGCAAGCCC---AGACTAGGGCATGCA-A--------G------------CAGGGCTGGCACCATCCCTCTTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163863 34 - 10418462 --------------AAAGCAGGGGTTG------------G------------CGTGGTTGCCGTCTTCTCTT---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151048 60 + 243199373 TAGGCAAGCCT--TAGTCTGGAACACATATA--------G-TTGGGG-GTGACATGGTCAGTGTCTTCTCTT---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529132 60 + 247518478 taggcaagcct--tagtctggaacgcatata--------g-ttgggg-gtgacatggtcagtgtcttctctt---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485831 60 + 131632457 TAGGCAAGGCT--TAGTCTGGAACACATATA--------G-TTGGGG-GTGACATGGTCAGTGTCTTCTCTT---- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707743 61 + 135000294 tgggcaagcct--tagtctggaacacatata--------gtttgggg-gtgacatggtcagtgtcttctctt---- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669764 60 + 6458163 tgggcaagcct--tagtctggaacacataga--------g-tcgggg-gtgatatggtcagtgtcttctctt---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94077692 51 + 106825570 tgggcaagcct--tagtctggaacacatata--------g-ttgggg-gtgacatga---------tctctt---- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146853789 60 + 158406734 tgggcaagcct--tagtctggaacacatata--------g-ttgggg-gtgacatgctcagtatcttctctt---- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7463 60 + 18451090 tgggcaagcct--tagtctggaacacgtata--------g-ttgggg-gcaacatgcttagtgtcttctctt---- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837442 61 - 32117204 TGGGCAGGCCTGGGAGTCTGGGCTGTGTGCA--------G--TGGGG-GCAGTGTGGTCAATGTCCTCTCTC---- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512936 60 + 51628933 TGAGCAAATCT--TGATGTGGACCACCCACA--------G-Tggggatgtggcatggtcagactcttctca----- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068479 68 - 2169676 tgagcaaacct--tggtctgggccacctgacctgggtgtg-tggggatgtggcatggtcagatccttctca----- i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51903 232 + 66950 I e felCat5.chrC1 212435064 153 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-23640.000000 s mm10.chr1_GL456221_random 134263 3 + 206961 A-GC- s rn5.chr9 92378477 4 + 121549591 ATGT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163897 2 - 10418462 --GT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151108 2 + 243199373 --AT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529192 2 + 247518478 --at- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485891 2 + 131632457 --AT- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707804 2 + 135000294 --at- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669824 2 + 6458163 --ac- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94077743 2 + 106825570 --at- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146853849 2 + 158406734 --at- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7523 2 + 18451090 --at- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837503 2 - 32117204 --GC- i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212435217 3 + 221441202 --ctc i felCat5.chrC1 I 153 I 236 s canFam3.chr25 42512996 1 + 51628933 ----c i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1068547 1 - 2169676 ----c i ailMel1.GL192536.1 C 0 I 2 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51903 232 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=540857.000000 s mm10.chr1_GL456221_random 134266 131 + 206961 TCTCTTGGAGCTCTGCCTCTATTCCCTA---GCAGCTGGTGTGCAGCCATT--GGG-TT-GGGGAGATTGAAGAGAACAG--AGGTGACTGGGTGCTTGACCAGGTGTTTTGTCTGGT-------------GGAAGATGTTGGAAGTA---TAGGA s rn5.chr9 92378481 130 + 121549591 TCCCATGGGGCTCTGCCTCTGTTGCCCA---ACAGCTGGTGTGGAGGCGCT--GGG-TT-GGAGAGATTGAAGAGAACAG--AGCTGAC-AGGTGTTTGAGCAGGTGTCCTGTCTGAT-------------GGAAGATGCTGGACGTC---TAGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4163899 138 - 10418462 TCTCTCTAAACTCTACCCCTATTCAATA---GCTGCTGGCTTGGGCCCATCCAGGA-TT-GGGGAGCAGGAAGACAGGAG--AGATGAG--------TGAGGAGGGGTCTTGCTTGACAGGCACAGCCATGGAAGGGCATTGGAAATG---GAGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151110 142 + 243199373 TCTGTCTTGGCCCTACCCCCACTCCATA---GCTGTTGGCTTGGTCCCATCCAGGA-TT-GGGGAGGTGAGAGAGATGGGTGAGATCAG-AG-----TGTGGAAGTGTCTTGCCTGACAGGTGCAGCCGTGAAATGACATTGCAAGTG---GTTGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529194 142 + 247518478 tctgtcttggccctacccccactccata---gctgttggcttggtcccatccagga-tt-ggggaggtaagagagatgggtgagatcag-ag-----tgtggaagtgtcttgcctgacaggtgcagccgtgaaatgacattgcAAGTG---GTTGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119485893 142 + 131632457 TCTGTCTTGGCCCTACCCCCACTCCATA---TCTGTTGGCTTGGTCCCATCCAGGA-CT-GGGGAGGTGAGAGAGATGGGTGAGATCAG-AG-----TGTGGAAGTGTCTTGCCTGACAGGTGCAGCCATGAAATGACATTGCAAGTG---GTTGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707806 142 + 135000294 tctgtcttggccctacccccactccata---gctgttggcttggtcccatccagga-tt-ggggaggtgagagagatgggtgagatcag-ag-----tgtggaagtgtcttgcctgacaggtgcagccgtgaaatgacattgcAAGTG---GTTGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669826 142 + 6458163 tctctcttggccctacccccactccata---gctgttggcttggtcccatccagga-tt-ggggaggtgagagagaggggtgagatcag-ag-----tgtggaagtgtcttgcctgacaggtgcagccgtgaaatgacattgcAAGTG---GTTGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94077745 143 + 106825570 tctctcttggccctatccccactccata---gctgttggcttggtcccatccaggattt-tgggaggtgagagagaggggtgagatcag-ag-----tgtggaggtgtcttgcctgacaggtgcagccgtgaaatgacATTACAAGTG---GTTGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146853851 141 + 158406734 tttctcttggccctacccctactccata---gctgttggcttggtcccatccagga-tt-ggggaggtgaaagagaggagtaagatcag-ag-----tgt-aaagtgtctttcctgaaaggtgcagccatgaaatgacatcgcAAGTG---AGTGA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7525 133 + 18451090 tttctcttggcccta-ccctactccaca---gctgttggcttggtcccatccagga-tt-ggggaggtgaaagagaggagTGAGATCAG-AG-----TGTAAAAGTGTCTAGCCTG--------AGCTGTGAAATGACATTGCAAGTG---ATTGA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837505 143 - 32117204 TATCTCCTTGCTCTCCCTCCACTCAAGACCTGCTGCTGGTTTGGGCCCCCATTGTG-CT-GGGAAGGTGAGAAAG----GAGAGATAAA-AG-----TATGAAAGAGTCTTGTCTGACAGACACTGCAGTG-AATGACGTTGGGAATGTGTATCAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42512999 143 + 51628933 tctctcttgcctccacctacacttaaga---gctgctggtttgggaccctccagga-ttagggaaggtggatgagagaggagagataag-aa-----tatggaagtgtctcatttgacAGATGTAGCTCTGAGATGCCACTGGGAATG---GAGGG i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1068550 141 - 2169676 tctctcttggctccacccacact--gga---gctgctggtttgggcccctccagga-ttaggggggatggaggacagaggagagataag-aa-----tatggacgtgtgtcccttGACAGATGTAACTCTGGGATAACATAGGGAATG---CAGGG i ailMel1.GL192536.1 I 2 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51903 232 + 66950 I e felCat5.chrC1 212435220 236 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=7098.000000 s mm10.chr1_GL456221_random 134397 1 + 206961 T s rn5.chr9 92378611 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231151252 1 + 243199373 T i hg19.chr2 C 0 I 12 s panTro4.chr2B 235529336 1 + 247518478 T i panTro4.chr2B C 0 I 12 s gorGor3.chr2B 119486035 1 + 131632457 T i gorGor3.chr2B C 0 I 12 s ponAbe2.chr2b 122707948 1 + 135000294 T i ponAbe2.chr2b C 0 I 12 s nomLeu2.GL397366 3669968 1 + 6458163 T i nomLeu2.GL397366 C 0 I 12 s rheMac3.chr12 94077888 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146853992 1 + 158406734 T i calJac3.chr6 C 0 I 12 s saiBol1.JH378144 7658 1 + 18451090 T i saiBol1.JH378144 C 0 I 12 s otoGar3.GL873532 28837648 1 - 32117204 T i otoGar3.GL873532 C 0 I 4 s canFam3.chr25 42513142 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068691 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4164037 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 51903 232 + 66950 I e felCat5.chrC1 212435220 236 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=13837.000000 s mm10.chr1_GL456221_random 134398 2 + 206961 GC s rn5.chr9 92378612 2 + 121549591 GC i rn5.chr9 C 0 C 0 s hg19.chr2 231151265 2 + 243199373 GC i hg19.chr2 I 12 C 0 s panTro4.chr2B 235529349 2 + 247518478 GC i panTro4.chr2B I 12 C 0 s gorGor3.chr2B 119486048 2 + 131632457 GC i gorGor3.chr2B I 12 C 0 s ponAbe2.chr2b 122707961 2 + 135000294 GC i ponAbe2.chr2b I 12 C 0 s nomLeu2.GL397366 3669981 2 + 6458163 GC i nomLeu2.GL397366 I 12 C 0 s rheMac3.chr12 94077889 2 + 106825570 GC i rheMac3.chr12 C 0 I 12 s papHam1.scaffold13267 52135 2 + 66950 GC i papHam1.scaffold13267 I 232 I 115 s calJac3.chr6 146854005 2 + 158406734 GC i calJac3.chr6 I 12 C 0 s saiBol1.JH378144 7671 2 + 18451090 GC i saiBol1.JH378144 I 12 C 0 s otoGar3.GL873532 28837653 2 - 32117204 GC i otoGar3.GL873532 I 4 C 0 s canFam3.chr25 42513143 2 + 51628933 TC i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1068692 2 - 2169676 AC i ailMel1.GL192536.1 C 0 I 12 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4164037 0 - 10418462 C e turTru2.JH486691 15706 573 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212435220 236 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=338428.000000 s mm10.chr1_GL456221_random 134400 75 + 206961 TCTCTCTTCCATGATATGCTGCCGTCACTTCCAC--------------AGTAGGGAAAGATGAGGGGCCAGACATCA--GGTTC-ACTTCAT s rn5.chr9 92378614 75 + 121549591 TCTCTCCACCATGACACACTCCCATCACTTCCAC--------------AGTAGGGAGAGAGGAGGGGCCGGACATCA--GGTTT-ACCTCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164037 64 - 10418462 ------------GAGACGCTTTCATCAGTTGCCC--------------TTTGAGGGACGGGGAGGCATCAGGCACCAC-AATTG-ACTTCTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151267 77 + 243199373 TCTTTCTTCCATGAGATGCTTTCATCAAGTCCAC--------------TGCAAGGGAAGGGGAGGGGTCAGGCATCACAGCTTG-ACTTATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529351 77 + 247518478 TCTTTCTTCCATGAGATGCTTTCATCAAGTCCAC--------------TGCAAGGGAAGGGGAGGGGTCAGGCATCACAGCTTG-ACTTATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119486050 77 + 131632457 TCTTTCTTCCATGAGATGCTTTCATCAAGTCCAC--------------TGCAAGGGAAGGGGAGGGGTCAGGCATCACAGCTTG-ACTTATT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122707963 77 + 135000294 TCTTTCTTCCATGAGATGCTTTCATCAAGTCCAC--------------TGCAAGGGAAGGGGAGGGGTCAGGCATCACAGCTTG-ACTTATT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3669983 77 + 6458163 TCTTTATTCCATGAGATGCTTTCATCAAGTCCAC--------------TGCAAGGGAAGGGGAGGGGTCAGGCATCACAGCTTG-ACTAATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94077903 77 + 106825570 TCTTTCTTCCACGAGATGCTTTCATCAACTGCCC--------------TGCAAGGGAAGGGGAGGGGTCAGGCATCACAGCTTG-ACTTATT i rheMac3.chr12 I 12 C 0 s calJac3.chr6 146854007 77 + 158406734 TCTTTCTTCCATGAGTCACTTTCATCAACTTCAC--------------TGCAAGGGAAGGTAAGGGGTTAGGCATCACAGCTTG-ACTTCTT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 7673 91 + 18451090 TCTTTCTTCCATGAGACATTTTCATCAACTTCACCATAAGGGAGTTGATGAAAGGGAAGGTAAGGGGTTAGGCATCACAGCTTG-ACTTCTT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28837655 78 - 32117204 TTTTTCTTCCATGAGATGCTTTCATCATTCCCAT--------------CCCAAAGTAAGAAGAGGGGGTAAGCCCCACAGCTTGAATTTCTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513146 65 + 51628933 TCTTTTCTCCATAAGATGCTTTTGATAACTCCAT--------------AGT------------GTGGTCTGACACCACTGCTCG-ACTTCCT i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1068706 65 - 2169676 TCTTTCCTCCATGAGATTCTTTCATCAATTCCAC--------------AGT------------GTGGTCTGGCACCACTGCTTG-ACTTCTT i ailMel1.GL192536.1 I 12 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52137 115 + 66950 I e felCat5.chrC1 212435220 236 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=9555.000000 s mm10.chr1_GL456221_random 134475 1 + 206961 T s rn5.chr9 92378689 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164101 1 - 10418462 T i speTri2.JH393335 C 0 I 2 s hg19.chr2 231151344 1 + 243199373 T i hg19.chr2 C 0 I 2 s panTro4.chr2B 235529428 1 + 247518478 T i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119486127 1 + 131632457 T i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122708040 1 + 135000294 T i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3670060 1 + 6458163 T i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94077980 1 + 106825570 T i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146854084 1 + 158406734 T i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 7764 1 + 18451090 T i saiBol1.JH378144 C 0 I 2 s otoGar3.GL873532 28837733 1 - 32117204 T i otoGar3.GL873532 C 0 I 2 s felCat5.chrC1 212435456 1 + 221441202 T i felCat5.chrC1 I 236 I 224 s canFam3.chr25 42513211 1 + 51628933 T i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1068771 1 - 2169676 T i ailMel1.GL192536.1 C 0 I 2 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52137 115 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=84531.000000 s mm10.chr1_GL456221_random 134476 20 + 206961 AAAGAAATTTTGCTTTCCTT s rn5.chr9 92378690 20 + 121549591 AAAAGAATTTAGCTTTCCGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164104 20 - 10418462 AAAGAAATGTAGCCTTTCTT i speTri2.JH393335 I 2 C 0 s hg19.chr2 231151347 20 + 243199373 AAAGAAATAGAGCTTTACTT i hg19.chr2 I 2 I 1 s panTro4.chr2B 235529431 20 + 247518478 AAAGAAATAGAGCTTTACTT i panTro4.chr2B I 2 I 1 s gorGor3.chr2B 119486130 16 + 131632457 AAAGAAAT----CTTTACTT i gorGor3.chr2B I 2 I 1 s ponAbe2.chr2b 122708043 20 + 135000294 AAAGAAATAGAGCTTTACTT i ponAbe2.chr2b I 2 I 1 s nomLeu2.GL397366 3670063 20 + 6458163 AAAGAAATAGAGCTTTACTT i nomLeu2.GL397366 I 2 I 1 s rheMac3.chr12 94077983 17 + 106825570 A---AAATAGAGCTTTACTT i rheMac3.chr12 I 2 I 1 s calJac3.chr6 146854087 20 + 158406734 AAGGAAATAGAGCTTTACTT i calJac3.chr6 I 2 I 4178 s saiBol1.JH378144 7767 20 + 18451090 AAGGAAATAGAGCTTTACTT i saiBol1.JH378144 I 2 I 3467 s otoGar3.GL873532 28837736 20 - 32117204 AAACAAAGAAAATCTTTCTT i otoGar3.GL873532 I 2 I 1 s canFam3.chr25 42513214 20 + 51628933 AGAGAAACGTAGCCATTCTT i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1068774 20 - 2169676 AGGGAAACATAGCCATTCTT i ailMel1.GL192536.1 I 2 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52137 115 + 66950 I e felCat5.chrC1 212435457 224 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=5062.000000 s mm10.chr1_GL456221_random 134496 3 + 206961 TGG s rn5.chr9 92378710 3 + 121549591 TTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164124 3 - 10418462 CTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151368 2 + 243199373 -TA i hg19.chr2 I 1 C 0 s panTro4.chr2B 235529452 2 + 247518478 -TA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119486147 2 + 131632457 -TA i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122708064 2 + 135000294 -TA i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3670084 2 + 6458163 -TA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94078001 2 + 106825570 -TA i rheMac3.chr12 I 1 C 0 s otoGar3.GL873532 28837757 2 - 32117204 -TG i otoGar3.GL873532 I 1 I 1 s canFam3.chr25 42513234 3 + 51628933 CTA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068794 3 - 2169676 CTA i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52137 115 + 66950 I e felCat5.chrC1 212435457 224 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=19891.000000 s mm10.chr1_GL456221_random 134499 6 + 206961 GGGTCT s rn5.chr9 92378713 6 + 121549591 GAGCCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164127 6 - 10418462 CCACCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151370 6 + 243199373 CAACCT i hg19.chr2 C 0 I 1 s panTro4.chr2B 235529454 6 + 247518478 CAACCT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119486149 6 + 131632457 CAACCT i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122708066 6 + 135000294 CAACCT i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3670086 6 + 6458163 CAACCT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94078003 6 + 106825570 CAACCT i rheMac3.chr12 C 0 I 1 s papHam1.scaffold13267 52252 6 + 66950 CAACCT i papHam1.scaffold13267 I 115 I 96 s otoGar3.GL873532 28837760 4 - 32117204 --GTCT i otoGar3.GL873532 I 1 I 1 s canFam3.chr25 42513237 6 + 51628933 CTGCCT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068797 6 - 2169676 CTGCGT i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212435457 224 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=172180.000000 s mm10.chr1_GL456221_random 134505 74 + 206961 -GGTGTAAG--------CCCCGCTGGCATGATATGATCCCACTGATGTGTTCTGTGGTCACAC-TGT------GGTTTGGCC-CTTTGCCT s rn5.chr9 92378719 77 + 121549591 -GGTGTGAG-----GGGCCCTGATGGCATGATTTAATTCCACTGATGTGTTCTGTGGTCACAC-TGT------GGTTTGACA-CTTTGCCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164133 60 - 10418462 -G----------------------GACGTGACTTGGCACAACCA----GTTCTGC--CAACAC-TGTGCAGACGACCTGGTG-CATTTTCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151377 82 + 243199373 -GATGTGAGTGAAGGGCTGAACCTGGCATAAT-CAGTTCCACCAACTCTTTCTAAGGTTACATATGT------GGCCTGGTG-CATTGTCC i hg19.chr2 I 1 C 0 s panTro4.chr2B 235529461 82 + 247518478 -GATGTGAGTGAAGGGCTGAACCTGGCATAAT-CAGTTCCACCAACTCTTTCTAAGGTTACATATGT------GGCCTGGTG-CATTGTCC i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119486156 82 + 131632457 -GATGTGAGTGAAGGGCTGAACCTGGCATAAT-CAGTTCCACCAACTCTTTCTAAGGTTACATATGT------GGCCTGGTG-CATTGTCC i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122708073 82 + 135000294 -GATGTGAGTGAAGGGCTGAACCTGGCATAAT-CAGTTCCACCAACTCTTTCTATGGTCCCATAGGT------GGACTGGTA-CATTGTCC i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3670093 82 + 6458163 -GATATGAGTGAAGGACTGAACCTGGCATAAT-CAGTTCCATCAACTCTTTCTAAGGTTACATACGT------GGCCTGGTA-TATTGTCC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94078010 82 + 106825570 -AATGCGAGTGAAAGGCTGAACCTGGCATCAT-CAGTTCCACTAACTCTTTCTATGGTTGCATACAT------GGACTAATG-CATTGTCC i rheMac3.chr12 I 1 C 0 s otoGar3.GL873532 28837765 82 - 32117204 -GATGTGAGTGAAGGAACCAAGCTGGCATAAC-CAGTTTCACCAACTCTTTTGATAGTCACATGAGT------GGCCTTTTG-CATGGCTT i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42513243 77 + 51628933 GGATATAAGTGA------TGAGCTGGCATGAC-CTGTTCTACCGATATTTTGTATGGTCACTTGCGT------GGTTTGGTG-CATTGCCT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068803 80 - 2169676 GGATGTGAATGAAAAGCTAGAGCTGGCATAAC-CTGTTCAATCGATACTT----TGGTCACATAGGC------AGCTTGGTGCCATTGCCT i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 15706 573 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52258 96 + 66950 I e felCat5.chrC1 212435457 224 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=4530.000000 s mm10.chr1_GL456221_random 134579 1 + 206961 T s rn5.chr9 92378796 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164193 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151459 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529543 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119486238 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708155 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3670175 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94078092 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28837847 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 16279 1 - 63237 T i turTru2.JH486691 I 573 I 103 s canFam3.chr25 42513320 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068883 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52258 96 + 66950 I e felCat5.chrC1 212435457 224 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-13880.000000 s mm10.chr1_GL456221_random 134580 7 + 206961 AGGAT----G--------T s rn5.chr9 92378797 7 + 121549591 AGGAT----G--------T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164194 7 - 10418462 GGGAT----A--------T i speTri2.JH393335 C 0 I 5 s hg19.chr2 231151460 6 + 243199373 AGGAT----G--------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235529544 6 + 247518478 AGGAT----A--------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119486239 6 + 131632457 AGGAT----G--------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708156 6 + 135000294 AGGAT----G--------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3670176 6 + 6458163 AGGAT----G--------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94078093 7 + 106825570 AGGAT----GT-------- i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28837848 13 - 32117204 GGGAT----G-TGGGTGC- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513321 6 + 51628933 ---ATGTGT---------- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068884 2 - 2169676 ---AC-------------- i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16280 103 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52258 96 + 66950 I e felCat5.chrC1 212435457 224 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-2113.000000 s mm10.chr1_GL456221_random 134587 1 + 206961 -T s rn5.chr9 92378804 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164206 1 - 10418462 -C i speTri2.JH393335 I 5 C 0 s papHam1.scaffold13267 52354 1 + 66950 -C i papHam1.scaffold13267 I 96 I 100 s otoGar3.GL873532 28837861 1 - 32117204 -T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513327 1 + 51628933 G- i canFam3.chr25 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e ponAbe2.chr2b 122708162 0 + 135000294 C e ailMel1.GL192536.1 1068886 0 - 2169676 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16280 103 - 63237 I e rheMac3.chr12 94078100 0 + 106825570 C e equCab2.chr6 17877608 1310 + 84719076 I e nomLeu2.GL397366 3670182 0 + 6458163 C e gorGor3.chr2B 119486245 0 + 131632457 C e panTro4.chr2B 235529550 0 + 247518478 C e hg19.chr2 231151466 0 + 243199373 C e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212435457 224 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=119221.000000 s mm10.chr1_GL456221_random 134588 82 + 206961 ------TAGTATCCCAGGGGA---------------CTACCTCAACCA-ACTCAACTGGAAAAAATGACTTTT-CATTTTTTCCCCCTACAGAAACTCCTATGTC s rn5.chr9 92378805 80 + 121549591 ------CAGGACTCCAGGGGA---------------CCACCTCTGCCA-ACTCGAGAGGAAAAAA-GACTTTC-CATCCCC-CCCCCAACAGAAACTCCTGTGTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164207 70 - 10418462 ------TTGGAACtagagtga---------------ccaactcaccct-ggctgcctg--------gattttc-cagtttttcccct----gaaactccggtatc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231151466 64 + 243199373 --------------CGGGTGC---------------TCAACTCAACCT-ACTTGCTTGG-------GACTTTCTCAATTTTCCCAAT----GAAACTCTCATTTC i hg19.chr2 C 0 I 99498 s panTro4.chr2B 235529550 64 + 247518478 --------------CGGGTGC---------------TCAACTCAACCT-ACTTGCTTGG-------GACTTTCTCAGTTTTGCCCAT----GAGACTCTCATTTC i panTro4.chr2B C 0 N 0 s gorGor3.chr2B 119486245 64 + 131632457 --------------CGGGTGC---------------TCAACTCAACCT-ACTTGCTTGG-------GACTTTCTCAATTTTGCCCAT----GAAACTCTCATTTC i gorGor3.chr2B C 0 I 98842 s ponAbe2.chr2b 122708162 79 + 135000294 --------------TGGGTGCTTGGAACTTggataatcaactcaacct-acttgcttgg-------gactttctcaattttgccagt----gaaactctcatgtc i ponAbe2.chr2b C 0 I 11 s nomLeu2.GL397366 3670182 64 + 6458163 --------------TGGGTGC---------------TCAACTCAACCT-ACTTGCTTGG-------GACTTTCTCAATTTTGCCCAT----GAAACTCTCATTTC i nomLeu2.GL397366 C 0 I 84883 s rheMac3.chr12 94078100 63 + 106825570 ---------------GGGTGC---------------TCAACTCAACCT-ACTTGCTTGG-------GACTTTCTCAATTTTGCCTAT----GAAACTCTCATTTC i rheMac3.chr12 C 0 I 99264 s otoGar3.GL873532 28837862 68 - 32117204 -------TGGAAGtagggtga---------------ctaactcagctt-agttgctagg-------gactttctag---cagctaat----gaaacttccatgtc i otoGar3.GL873532 C 0 I 11 s canFam3.chr25 42513328 79 + 51628933 GGGTCCTTGAAATtagagtga---------------ccagctcactttggtttgtccag-------gacattcccagtttttccact----gaaaatcctgcatc i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068886 70 - 2169676 ---------AATGTGGATtga---------------ccaactcaccctggtttgcccag-------gacatttccagttttgccact----gaaaatcctgcatc i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16280 103 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52355 100 + 66950 I e felCat5.chrC1 212435457 224 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=-7352.000000 s mm10.chr1_GL456221_random 134670 9 + 206961 -----ATTAGT---------GAC s rn5.chr9 92378885 9 + 121549591 -----ATTAGT---------GAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164277 18 - 10418462 -----ctgggcattttcttagtc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251028 7 + 243199373 ----------------cttagtc i hg19.chr2 I 99498 C 0 s panTro4.chr2B 235635108 7 + 247518478 ----------------cttagtc i panTro4.chr2B N 0 C 0 s gorGor3.chr2B 119585151 7 + 131632457 ----------------cttcgtc i gorGor3.chr2B I 98842 C 0 s ponAbe2.chr2b 122708252 7 + 135000294 ----------------cttagtc i ponAbe2.chr2b I 11 C 0 s nomLeu2.GL397366 3755129 7 + 6458163 ----------------cttagtc i nomLeu2.GL397366 I 84883 C 0 s rheMac3.chr12 94177427 7 + 106825570 ----------------ctttgtc i rheMac3.chr12 I 99264 C 0 s otoGar3.GL873532 28837941 7 - 32117204 ----------------cttagtc i otoGar3.GL873532 I 11 I 7 s canFam3.chr25 42513407 18 + 51628933 ctgggaaaccc-----cttagtc i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068956 17 - 2169676 c-aggataccc-----cttagtc i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16280 103 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52355 100 + 66950 I e felCat5.chrC1 212435457 224 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 117893 1846 + 176633 I a score=26199.000000 s mm10.chr1_GL456221_random 134679 7 + 206961 ATGAGCA s rn5.chr9 92378894 7 + 121549591 ATGAGCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164295 7 - 10418462 ctgggca i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251035 7 + 243199373 ctggaca i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635115 7 + 247518478 ctggaca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585158 7 + 131632457 ctggaca i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708259 7 + 135000294 ctggaca i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755136 7 + 6458163 ctggaca i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177434 7 + 106825570 ctggaca i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 119739 7 + 176633 ctgggca i micMur1.scaffold_3075 I 1846 I 322 s otoGar3.GL873532 28837955 6 - 32117204 -agacca i otoGar3.GL873532 I 7 I 1 s canFam3.chr25 42513425 7 + 51628933 ctaggtg i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068973 7 - 2169676 ctgggtg i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16280 103 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52355 100 + 66950 I e felCat5.chrC1 212435457 224 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I a score=8832.000000 s mm10.chr1_GL456221_random 134686 2 + 206961 GA s rn5.chr9 92378901 2 + 121549591 GA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164302 2 - 10418462 ga i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251042 2 + 243199373 ga i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635122 2 + 247518478 ga i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585165 2 + 131632457 ga i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708266 2 + 135000294 ga i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755143 2 + 6458163 ga i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177441 2 + 106825570 ga i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28837962 2 - 32117204 ga i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42513432 2 + 51628933 ca i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068980 2 - 2169676 aa i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16280 103 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52355 100 + 66950 I e felCat5.chrC1 212435457 224 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=6228.000000 s mm10.chr1_GL456221_random 134688 1 + 206961 C s rn5.chr9 92378903 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164304 1 - 10418462 t i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251044 1 + 243199373 c i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635124 1 + 247518478 c i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585167 1 + 131632457 c i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708268 1 + 135000294 c i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755145 1 + 6458163 c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177443 1 + 106825570 c i rheMac3.chr12 C 0 C 0 s turTru2.JH486691 16383 1 - 63237 c i turTru2.JH486691 I 103 C 0 s felCat5.chrC1 212435681 1 + 221441202 c i felCat5.chrC1 I 224 C 0 s canFam3.chr25 42513434 1 + 51628933 c i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068982 1 - 2169676 c i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e otoGar3.GL873532 28837964 0 - 32117204 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52355 100 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=1474.000000 s mm10.chr1_GL456221_random 134689 1 + 206961 T s rn5.chr9 92378904 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164305 1 - 10418462 a i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251045 1 + 243199373 c i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635125 1 + 247518478 c i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585168 1 + 131632457 c i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708269 1 + 135000294 c i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755146 1 + 6458163 c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177444 1 + 106825570 c i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 52455 1 + 66950 c i papHam1.scaffold13267 I 100 C 0 s otoGar3.GL873532 28837964 1 - 32117204 c i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 16384 1 - 63237 t i turTru2.JH486691 C 0 I 59 s felCat5.chrC1 212435682 1 + 221441202 t i felCat5.chrC1 C 0 I 7 s canFam3.chr25 42513435 1 + 51628933 t i canFam3.chr25 C 0 I 5 s ailMel1.GL192536.1 1068983 1 - 2169676 t i ailMel1.GL192536.1 C 0 I 5 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=9332.000000 s mm10.chr1_GL456221_random 134690 2 + 206961 AG s rn5.chr9 92378905 2 + 121549591 AA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164306 2 - 10418462 ag i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251046 2 + 243199373 ag i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635126 2 + 247518478 ag i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585169 2 + 131632457 ag i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708270 2 + 135000294 ag i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755147 2 + 6458163 ag i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177445 2 + 106825570 gg i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 52456 2 + 66950 gg i papHam1.scaffold13267 C 0 C 0 s otoGar3.GL873532 28837965 2 - 32117204 aa i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513441 2 + 51628933 ag i canFam3.chr25 I 5 C 0 s ailMel1.GL192536.1 1068989 2 - 2169676 ag i ailMel1.GL192536.1 I 5 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16385 59 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212435683 7 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=-13354.000000 s mm10.chr1_GL456221_random 134692 2 + 206961 --CA s rn5.chr9 92378907 2 + 121549591 --CA i rn5.chr9 C 0 C 0 s hg19.chr2 231251048 2 + 243199373 --ga i hg19.chr2 C 0 I 5 s panTro4.chr2B 235635128 2 + 247518478 --ga i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 119585171 2 + 131632457 --ga i gorGor3.chr2B C 0 I 5 s ponAbe2.chr2b 122708272 2 + 135000294 --ga i ponAbe2.chr2b C 0 I 5 s nomLeu2.GL397366 3755149 2 + 6458163 --ga i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94177447 2 + 106825570 --ga i rheMac3.chr12 C 0 I 5 s papHam1.scaffold13267 52458 2 + 66950 --ga i papHam1.scaffold13267 C 0 I 580 s otoGar3.GL873532 28837967 2 - 32117204 --ct i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212435690 2 + 221441202 tt-- i felCat5.chrC1 I 7 C 0 s canFam3.chr25 42513443 2 + 51628933 tt-- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068991 2 - 2169676 ct-- i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4164308 0 - 10418462 C e turTru2.JH486691 16385 59 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=6228.000000 s mm10.chr1_GL456221_random 134694 1 + 206961 G s rn5.chr9 92378909 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164308 1 - 10418462 g i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251055 1 + 243199373 g i hg19.chr2 I 5 C 0 s panTro4.chr2B 235635135 1 + 247518478 g i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 119585178 1 + 131632457 g i gorGor3.chr2B I 5 C 0 s ponAbe2.chr2b 122708279 1 + 135000294 g i ponAbe2.chr2b I 5 C 0 s nomLeu2.GL397366 3755156 1 + 6458163 g i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 94177454 1 + 106825570 g i rheMac3.chr12 I 5 C 0 s otoGar3.GL873532 28837969 1 - 32117204 g i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212435692 1 + 221441202 a i felCat5.chrC1 C 0 I 266 s canFam3.chr25 42513445 1 + 51628933 g i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068993 1 - 2169676 g i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16385 59 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=182690.000000 s mm10.chr1_GL456221_random 134695 45 + 206961 GTTACTTTATTTGCCATTTACTAAATTGATCACAACTATTGAGTC s rn5.chr9 92378910 45 + 121549591 GTCACTTTGTTTGCCATTTACTAAATTGATCCCAACTGCTGAGCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164309 45 - 10418462 gtcaccctaCTTGGCACTTATTGAATTGTTCCCAACTATTGGGAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251056 45 + 243199373 gtcattctaCTTGGTACTTATTGGATTGTTCCCAACCATTGGGAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635136 45 + 247518478 gtcattctaCTTGGTACTTATTGGATTGTTCCTAACCGTTGGGAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585179 45 + 131632457 gtcattctaCTTGGTACTTATTGGATTGTTCCCAACCGTTGGGAC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708280 45 + 135000294 gtcattctaCTTGGTACTTATTGGATTGTTCCCAACAGTTGGGAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755157 45 + 6458163 gtcattctaCTCGGTACTTGTTGGATTGTTCCCAACCGTTGGGAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177455 45 + 106825570 gtcattctaCTTGGTACTTACTGGATTGTTCCCAACCGTTGGGAC i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28837970 45 - 32117204 gccatcttaCTTGGTTCTTATTGAATTGTTCTCAACTATGGGGGC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513446 45 + 51628933 gttaccctCCTTGGCACTTAGTGAATTGTTCTCAATTATTGAAAC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1068994 45 - 2169676 gttaccctTCTTGTCCCTTAGTGAATTGTTCCCGACTATTGAGAC i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16385 59 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435693 266 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=11736.000000 s mm10.chr1_GL456221_random 134740 2 + 206961 TT s rn5.chr9 92378955 2 + 121549591 TT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164354 2 - 10418462 GT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251101 2 + 243199373 TT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635181 2 + 247518478 TT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585224 2 + 131632457 TT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708325 2 + 135000294 TT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755202 2 + 6458163 TT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177500 2 + 106825570 TT i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838015 2 - 32117204 TT i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 16444 2 - 63237 TT i turTru2.JH486691 I 59 I 37 s canFam3.chr25 42513491 2 + 51628933 tt i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069039 2 - 2169676 TT i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435693 266 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=119410.000000 s mm10.chr1_GL456221_random 134742 39 + 206961 CTATAAAGTTTTTGAA--------------------AAAACAGCAGAGAATTGATAAAT s rn5.chr9 92378957 39 + 121549591 CTATACATTTTTTGGA--------------------TAAACAGCAGAGAAGTGACAAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164356 39 - 10418462 CTACTAAAGTTTTGAG--------------------AAAAAAGGAGGAAATTGACAACT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251103 39 + 243199373 GAAGTGAAATTTTGAG--------------------AAAACAGGAGGAAATTGAAAACT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635183 39 + 247518478 GAAGTGAAATTTTGAG--------------------AAAACAGGAGGAAATTGAAAACT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585226 39 + 131632457 GGAGTGAAATTTTGAG--------------------AAAACAGGAGGAAATTGAAAACT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708327 39 + 135000294 GAAGTGAAATTTTGAG--------------------AAAACAGGAGGAAATTGAAGACT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755204 39 + 6458163 GAAGTGAAATTATGAG--------------------AAAACAGGAGGAAAGTGAAAACT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177502 39 + 106825570 GAAGTGAAATTTTGAG--------------------AAAGCAGGAGGAAATTGAAAACT i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838017 38 - 32117204 GAAGTGAAATTCTGAG--------------------AAAACAGGAAGAAATTGAA-ACT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513493 59 + 51628933 ttagtacaattttagtacttttagtacaattttTCCAAAACAGGAAAGAATGTAAAATT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069041 39 - 2169676 TTACTAAAATTTTGGG--------------------AAAACAGGAAAGAATTTAAAATT i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16446 37 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435693 266 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=24477.000000 s mm10.chr1_GL456221_random 134781 5 + 206961 CTGTT s rn5.chr9 92378996 5 + 121549591 CTGTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164395 5 - 10418462 GTGTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251142 5 + 243199373 CTGTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635222 5 + 247518478 CTGTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585265 5 + 131632457 CTGTC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708366 5 + 135000294 CTGTC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755243 5 + 6458163 CTGTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177541 5 + 106825570 CTGTC i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838055 4 - 32117204 CTGT- i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 16483 5 - 63237 TTGTC i turTru2.JH486691 I 37 I 196 s canFam3.chr25 42513552 5 + 51628933 CTGTC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069080 5 - 2169676 CTGTC i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435693 266 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=430237.000000 s mm10.chr1_GL456221_random 134786 136 + 206961 AT-----------TCTAAAGT----TT----AAGACTGACCATAACAACTGTTTTTAAATAACATTAAACTGTGTTCTGACCACAATTGCATTTATG-GGGTTAGTGAT--GGATTTCAAT-TTAGTACATGGGCAAAAATGAC----------------TCTGGATGCAACAAG- s rn5.chr9 92379001 136 + 121549591 AC-----------TCTAAAGT----TT----AAGACTGGCCATAACAACTATTTTTACATAACTTTAAACTATGTTCTGACCACAATTGTATTTATG-GGGTTACTGAT--GGATTTCAGT-TTATTACATGGGCAAAAATACC----------------TCTGGTTGCAACAAT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164400 149 - 10418462 AC----ACTTAATTCTAGAGT----TTAATCAATACCATCCATAACAATCATTTTATGATAATTTAAAATTATATTCTGACCAT-ATTGTATTTAAGAGAATTTGTGAT-GGGATTTGAGTATTATTAAGTGGGTATTTTAACT----------------TAAGAGCACAATAAG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251147 145 + 243199373 AC----ACTTCTTTCTAGAGG----TT----AATACCAACCATAACAATTATTTTAAAACAACTTTAAATTATATTCTGACCACCATAGTATTTATTAAGGTTTATGTT-AGGGTTTCAGTATTGTTAAATGGGTATTACAGCC----------------TGAGA-CACAATAAT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635227 145 + 247518478 AC----ACTTCTTTCTAGAGG----TT----AATACCAACAATAACAATTATTTTAAAACAACTTTAAATTATATTCTGACCACCATAGTATTTATTAAGGTTTGTGAT-AGGGTTTCAGTATTGTTAAATGGGTATTACAGCC----------------TGAGG-CACAATAAT- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585270 145 + 131632457 AC----ACTTCTTTCTAGAGG----TT----AATACCAACCATAACAATTATTTTAAAACAACTTTAAATTATATTCTGACCACCATAGTATTTATTAAGGTTTGTGAT-AGGGTTTCAGTATTGTTAAATGGGTATTACAGCC----------------TGAGA-CACAATAAT- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708371 145 + 135000294 AC----ACTTCTTTCTAGAGG----TT----AATACCAACCATAACAATTATTTTAAAACAACTTTAAATGATATTCTGACCACCATAGTATTTATTAGGGTTTGTGAT-AGGGTTTCAGTATTGTTAAATGAGTATTACAGCC----------------TGAGA-CACAATAAT- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755248 145 + 6458163 AC----ACTTCTTTCTAGAGG----TT----AATACCAACCATAACaattattttaaaataactttaaattatattCTGACCACCATAGTATTTATTAGGGTTTGTGAT-AGGGTTTCAGTATTGTTAAATGGGTATTACAGCC----------------TGAGA-CACAATAAT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177546 165 + 106825570 AC----ACTTCTTTCTAGAGGCTAATT----AACACCAACCATAACaattatttaaaaataactttaaattatattCTGGCCACCATAGTATTTATTAGGGCTTGTGAT-AGGGTTTCAGTGTTGTTAAATGGGTATTACAGCCATTTAACACAATAATATTTGA-CACAATAAT- i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838059 148 - 32117204 AC----ACTTACTTCTGGAGTCTAATG----AATACCAACTATAACAATTA-TTAGAAATAACTTTAAATTGTATTCTGAGCACCATAGTATTTACTAGGGTTTAAGTT-GGGGTTTCAGTGTTGTTAAATGGGTGGTACAGTC----------------TGGGA-CACAAGAAT- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513557 148 + 51628933 ACACTTACTTACTATTAGAAAGCAATT----AATATCAAGCATGAAAAAT-TTTAAAAATAACCTTAAATTATATTCTGACTGC-------TATATTAGAGTCCATAGTGGGGGATTTGGTGTTATTAAGTGGGTATTAGAAAC----------------TGGGGACACAAATATT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069085 144 - 2169676 AC----ACTTACAATTAGAGATTAATT----AATACCAAGCCTGACAATT-TTTAAAAATAACCTTAAATTATATTCTGACTGC-------CTTGTTAGAGTTCATGGTGGGGGATTTGGTGTTATTAAATGGGTATTACAACC----------------TGGGGACACAAAAATG i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16488 196 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435693 266 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=3785.000000 s mm10.chr1_GL456221_random 134922 1 + 206961 A s rn5.chr9 92379137 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231251292 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635372 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585415 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708516 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755393 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177711 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838207 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513705 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069229 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4164549 0 - 10418462 C e turTru2.JH486691 16488 196 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435693 266 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=116786.000000 s mm10.chr1_GL456221_random 134923 32 + 206961 ACTTGGTGTTGCCTTGCTCAGGTATTCTGTTT s rn5.chr9 92379138 32 + 121549591 ACTCAATCTTGCCTTGCTCAGTTATTCTGCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164549 31 - 10418462 -TTGAATCTTGCCTAGCTCAGCCACTCTGTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251293 32 + 243199373 TTTGAATCCTGCCTTGCTCAGCCACTTGATTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635373 32 + 247518478 TTTGAATCCTGCCTTGCTCAGCCACTCGATTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585416 32 + 131632457 TTTGAATCCTGCCTTGCTCAGCCACTCGATTC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708517 32 + 135000294 TTTGAATCCTGCCTTGCTCAGCCACTGGATTC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755394 32 + 6458163 TTTGAATCCTGCCTTGCTCAGCCACTCAATTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177712 32 + 106825570 TTTGAATCCTGCCTTGTTCAGCCTCTTGATTC i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838208 31 - 32117204 GTTGAATCTTGCCTTA-TCAGCCACTCTATTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513706 32 + 51628933 GTTAAATCTTGTCTTATTTAGTCACTCTATTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069230 32 - 2169676 GTTTGATCCTGTCTTGCTTAGTCACTCTATTT i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16488 196 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435693 266 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=16389.000000 s mm10.chr1_GL456221_random 134955 5 + 206961 GGAAA s rn5.chr9 92379170 5 + 121549591 GGAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164580 5 - 10418462 TGAGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251325 5 + 243199373 TGAGA i hg19.chr2 C 0 I 1 s panTro4.chr2B 235635405 5 + 247518478 TGAGA i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119585448 5 + 131632457 TGAGA i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122708549 5 + 135000294 TGAGA i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3755426 5 + 6458163 TGAGA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94177744 5 + 106825570 TGAGA i rheMac3.chr12 C 0 I 1 s otoGar3.GL873532 28838239 5 - 32117204 TGGGA i otoGar3.GL873532 C 0 I 1 s felCat5.chrC1 212435959 5 + 221441202 TCAAC i felCat5.chrC1 I 266 I 78 s canFam3.chr25 42513738 5 + 51628933 TCAAA i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1069262 5 - 2169676 TCAAA i ailMel1.GL192536.1 C 0 I 1 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16488 196 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=38713.000000 s mm10.chr1_GL456221_random 134960 10 + 206961 TAAAATGTTG s rn5.chr9 92379175 10 + 121549591 TAAAATGTTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164585 10 - 10418462 GAAAACACAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251331 10 + 243199373 TAAAACACAG i hg19.chr2 I 1 C 0 s panTro4.chr2B 235635411 10 + 247518478 TAAAACACAG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119585454 10 + 131632457 TAAAACACAG i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122708555 10 + 135000294 TAAAACACAG i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3755432 10 + 6458163 TAAAACACAG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94177750 10 + 106825570 TAAAACACAG i rheMac3.chr12 I 1 C 0 s otoGar3.GL873532 28838245 10 - 32117204 TGAAACACGG i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42513744 10 + 51628933 TAAAACATGA i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1069268 10 - 2169676 TAAAACTCAG i ailMel1.GL192536.1 I 1 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16488 196 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435964 78 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=7098.000000 s mm10.chr1_GL456221_random 134970 1 + 206961 T s rn5.chr9 92379185 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164595 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251341 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635421 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585464 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708565 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755442 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177760 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838255 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 16684 1 - 63237 T i turTru2.JH486691 I 196 I 63 s canFam3.chr25 42513754 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069278 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435964 78 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=4664.000000 s mm10.chr1_GL456221_random 134971 1 + 206961 A s rn5.chr9 92379186 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164596 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251342 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635422 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585465 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708566 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755443 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177761 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838256 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513755 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069279 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16685 63 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435964 78 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 119746 322 + 176633 I a score=-4503.000000 s mm10.chr1_GL456221_random 134972 4 + 206961 G-GAT- s rn5.chr9 92379187 4 + 121549591 G-AAT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164597 5 - 10418462 GTGCC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251343 4 + 243199373 G-TGC- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235635423 4 + 247518478 G-TGC- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119585466 4 + 131632457 G-TGC- i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122708567 4 + 135000294 G-CGC- i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3755444 4 + 6458163 G-TGC- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94177762 4 + 106825570 G-TGC- i rheMac3.chr12 C 0 I 1 s micMur1.scaffold_3075 120068 4 + 176633 G-GAT- i micMur1.scaffold_3075 I 322 I 166 s otoGar3.GL873532 28838257 4 - 32117204 G-TAC- i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42513756 5 + 51628933 G-TGTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069280 5 - 2169676 G-TGCT i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16685 63 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435964 78 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I a score=53502.000000 s mm10.chr1_GL456221_random 134976 16 + 206961 CTAACATG---TATCTAGA s rn5.chr9 92379191 16 + 121549591 ATAAAATG---TTCCTAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164602 19 - 10418462 ATATTATGGGCTAGCTGGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251348 19 + 243199373 GTATTATGAATTTGCTGGA i hg19.chr2 I 1 C 0 s panTro4.chr2B 235635428 19 + 247518478 GTATTATGAATTTGCTGGA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119585471 19 + 131632457 GTATTATGAATTTGCTGGA i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122708572 19 + 135000294 GCATTATGAATTTGCTGGA i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3755449 19 + 6458163 GTATTATGAATTTGCTGGA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94177767 19 + 106825570 GTATTATGAATTTGCTGTA i rheMac3.chr12 I 1 C 0 s otoGar3.GL873532 28838262 18 - 32117204 GAATTATGAATTAG-TGGA i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42513761 19 + 51628933 GTATTATGAATTAGCTAGG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069285 19 - 2169676 GTATTATGATTTAGCTGGT i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16685 63 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435964 78 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 120072 166 + 176633 I a score=2185.000000 s mm10.chr1_GL456221_random 134992 1 + 206961 C s rn5.chr9 92379207 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164621 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251367 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635447 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585490 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708591 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755468 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177786 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 120238 1 + 176633 C i micMur1.scaffold_3075 I 166 I 53 s otoGar3.GL873532 28838280 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513780 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069304 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16685 63 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435964 78 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I a score=81538.000000 s mm10.chr1_GL456221_random 134993 35 + 206961 CTAAA-TCCCAATCTCCCTATACCAACTTCTCTGTT s rn5.chr9 92379208 35 + 121549591 CTAAA-TCCAAATCTCCCTATACCAATTTCTCTGCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164622 36 - 10418462 GTAAGCTTCAAATCTCCTTATACCAAAGGATCCAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251368 36 + 243199373 TTAAGCTCCAGTTTGTTCTGTACCAAAACCTCCATA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635448 36 + 247518478 TTAAGCTCCAGATTGTTCTGTACCAAAACCTCCATA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585491 36 + 131632457 TTAAGCTCCAGATTGTTCTGTACCAAAACCTCCATA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708592 36 + 135000294 TTAAGCTCCAGATTGTTCTGTACCAAGACCTCCACA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755469 36 + 6458163 TTAAGCTCCAGATTTTTCTGTACCAAGACCTCCATA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177787 36 + 106825570 TTAAGCTCCAGATTGTTCTGTACCAAAAGCTCCATA i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838281 36 - 32117204 TTAAGCCCCAGATCTCCCTTTACCAAGAGCTCTGAG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42513781 8 + 51628933 TTTA--------------------AAAa-------- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069305 36 - 2169676 TTAAGCTCCAAGTCTCCTTATACCAAAAGCTCCACA i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16685 63 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435964 78 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 120239 53 + 176633 I a score=5159.000000 s mm10.chr1_GL456221_random 135028 1 + 206961 G s rn5.chr9 92379243 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164658 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251404 1 + 243199373 G i hg19.chr2 C 0 I 1 s panTro4.chr2B 235635484 1 + 247518478 G i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119585527 1 + 131632457 G i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122708628 1 + 135000294 G i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3755505 1 + 6458163 G i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94177823 1 + 106825570 G i rheMac3.chr12 C 0 I 1 s micMur1.scaffold_3075 120292 1 + 176633 A i micMur1.scaffold_3075 I 53 I 192 s otoGar3.GL873532 28838317 1 - 32117204 G i otoGar3.GL873532 C 0 I 1 s ailMel1.GL192536.1 1069341 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e canFam3.chr25 42513789 0 + 51628933 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16685 63 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212435964 78 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I a score=-383.000000 s mm10.chr1_GL456221_random 135029 1 + 206961 G s rn5.chr9 92379244 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164659 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s turTru2.JH486691 16748 1 - 63237 A i turTru2.JH486691 I 63 I 207 s felCat5.chrC1 212436042 1 + 221441202 A i felCat5.chrC1 I 78 I 103 s ailMel1.GL192536.1 1069342 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e ponAbe2.chr2b 122708629 1 + 135000294 I e otoGar3.GL873532 28838318 1 - 32117204 I e canFam3.chr25 42513789 0 + 51628933 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94177824 1 + 106825570 I e equCab2.chr6 17877608 1310 + 84719076 I e nomLeu2.GL397366 3755506 1 + 6458163 I e gorGor3.chr2B 119585528 1 + 131632457 I e panTro4.chr2B 235635485 1 + 247518478 I e hg19.chr2 231251405 1 + 243199373 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 120293 192 + 176633 I a score=113673.000000 s mm10.chr1_GL456221_random 135030 42 + 206961 CTAAAATAGACATCA--GTGTTTT--CTTTAT-CTCTTCAAA-ATACA s rn5.chr9 92379245 42 + 121549591 CTAAAACAGACATCA--GTGTTTC--CTTTAT-CTCTTCAAA-ATCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164660 45 - 10418462 CTAGAGTAGACTTCAATATGTTTG--CTTTTTCCTCCTACAA-GTATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251406 45 + 243199373 CTAGAGTAGACTTCATGTTGTTTC--TTTTTTCTCCCTAAAA-ATATG i hg19.chr2 I 1 C 0 s panTro4.chr2B 235635486 45 + 247518478 CTAGAGTAGACTTCATGGTGTTTC--TTTTTTCTCCGTAAAA-ATATG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119585529 45 + 131632457 CTAGAGTAGACTTCATGGTGTTTC--TTTTTTCTCCCTAAAA-ATATG i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122708630 45 + 135000294 CTAGAGTAGACTTCATGATGTTTC--TTTTTTCTCCCTAAAA-ATATG i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3755507 45 + 6458163 CTAGAGTAGACTTCATGGTGTTTC--TTTTTTCTCCCTAAAA-ATGTG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94177825 45 + 106825570 CTAGAGTAGACTTCATGGTGTTTC--CTTTTTCTCCCTAAAA-ATATG i rheMac3.chr12 I 1 C 0 s otoGar3.GL873532 28838319 47 - 32117204 CTAGAGTGGACTTAAGTGTGTCTCATTTTTTTTTCACTGCAA-ATATT i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42513789 30 + 51628933 --------------aatattttat--ttatttattcatgaaagaca-- i canFam3.chr25 C 0 I 379 s ailMel1.GL192536.1 1069343 44 - 2169676 CTAGAATGGACTTCAGTGTATTTC--CTTTTTCTCCCTAAAAAATA-- i ailMel1.GL192536.1 C 0 I 3 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16749 207 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212436043 103 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 120293 192 + 176633 I a score=178848.000000 s mm10.chr1_GL456221_random 135072 57 + 206961 AGCCTTAAACATGTTCAATAAAAGGTAA-TCCAGCAGACCTTATAGTCCCACAATGAA s rn5.chr9 92379287 57 + 121549591 AGCCTTAAACAGGTTCAATAAAAGATAA-TCCAGCAGGCCTTCTAGTCCCACAATGAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164705 57 - 10418462 AGGCTTAAACAGGTTTGATGAAGATAAA-CACAATATGGCTACTGGTCTCAGAAAAGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251451 58 + 243199373 AGGCCTAAACAGATTTAATGAAAGCTAAATCCGACATACCCACTAGTCCCAGAAAAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635531 58 + 247518478 AGGCCTAAACAGATTTAATGAAAGCTAAATCCGACATACCCACTAGTCCCAGAAAAGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585574 58 + 131632457 AGGCCTAAACAGATTTAATGAAAGCTAAATCCGACATACCCACTAGTCCCAGAAAAGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708675 58 + 135000294 AGGCCTAAGCAGATTTAATGAAAGCTAAATCCGACATACCCACTAGTCCCAGAAAAGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755552 58 + 6458163 AGGCCTAAACAGATTTAATGAAAGCTAAATCCGACATACCCACTAGTCCCAGAAAAGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177870 58 + 106825570 AGGCCTCAACAAATGTAATGAAAGCTAAATCTGACACACCCACTAGTCCCAGAAAAGA i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838366 58 - 32117204 AGGCCTAAAAAAGTTTGATGAAAGATAAGTCCAACATACCCACCAGCGTCAGAAAAGA i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1069390 56 - 2169676 -GGACT-AACAGGTTTGATGAAAGGTAAATTTAACATAGTCACCAGTCCCAGGAAAGA i ailMel1.GL192536.1 I 3 I 1 e saiBol1.JH378144 7787 3467 + 18451090 I e canFam3.chr25 42513819 379 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16749 207 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212436043 103 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 120293 192 + 176633 I a score=5548.000000 s mm10.chr1_GL456221_random 135129 3 + 206961 AAA s rn5.chr9 92379344 3 + 121549591 AAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164762 3 - 10418462 TGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251509 3 + 243199373 TGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635589 3 + 247518478 TGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585632 3 + 131632457 TGT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708733 3 + 135000294 TGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755610 3 + 6458163 TGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177928 3 + 106825570 TGT i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838424 3 - 32117204 TGT i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212436146 2 + 221441202 -AT i felCat5.chrC1 I 103 I 95 s ailMel1.GL192536.1 1069447 2 - 2169676 -GT i ailMel1.GL192536.1 I 1 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e canFam3.chr25 42513819 379 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16749 207 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 120293 192 + 176633 I a score=262846.000000 s mm10.chr1_GL456221_random 135132 90 + 206961 CACCACACAGCAG----TAGGGAG-------GCAAGATATCTCAATTTGCTGTGCTGGCTGATCCTGCTGCCAAAACTTTGACACCAAGCCAGGCTGGAAT s rn5.chr9 92379347 90 + 121549591 CGTCACACAGTGT----TAGGGAG-------AAAAGATCTCTGAATTTGTTGTGCTGGCTGATCCTGTTGCCAAAGCTTTTACACCAAGTCAGGCTAGAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164765 96 - 10418462 AAGCAGACAGAGA----TAGATAGAAAGCAAGAAAGAACTCTGTCTTTGTCAGCCTGTCTGAG-GTGTGGTCAGAGCTGTAATGTGCAGCCTAGATGGAAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251512 101 + 243199373 AACCAGACAGAAACAGCTAGAGAGAAAGGAAGAAATAACTCTGTATTAGCTGGACTGTTCAAGGTTGTGGCCAGAGCTCTAGTGCCAAGCCTGGCTGGAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635592 101 + 247518478 AACCAGACAGAAACAGCTAGAGAGAAAGGAAGAAATAACTCTGTATTAGCTGGACTGTTCAAGGTTGTGGCCAGAGCTCTAGTGCCAAGCCTGGCTGGAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585635 101 + 131632457 AACCAGACAGAAACAGCTAGAGAGAAAGGAAGAAATAACTCTGTATTAGCTGGACTGTTCAAGGTTGTGGCCAGAGCTCTAGTGCCAAGCCTGGCTGGAAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708736 101 + 135000294 AACCAGACAGAAACAGATAGAGAGAAAGGAAGAAATAACTCTGTATTAGCTGGACTGTTCAAGGTTGTGGCCAGAGCTCTAGTGCCAAGCCTGGCTGGAAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755613 101 + 6458163 AACCAGACAGAAACAGATAGAGAGAAAGGAAGAAATAACTCCGTATTAGCTGGACTGTTCAAGGTTGTGGCCAGGGCTCTAGTGTCAAGCCTCGCTGGAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94177931 97 + 106825570 AACCAGACAGAAACAGAT----AGAAAGGAAGAAATAACTCTGTATTAGCTGGACTGTCCAAGGTTGTGGCCAGAGCTCTAGTGCCAAGACTGGCTGGAGT i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838427 97 - 32117204 AACCAGACAGAAA----TGGAGAGAAAGCAAGAAAGAACTCCATACGTGCTGGACTGTCCTGGGCTATGGCCAGAGCTCTGGAGTCCATCCTGGGTGGGGT i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1069449 99 - 2169676 AACCAGAGAGAGG--GACAGACAGAGGCCAAGAAAGAACTCTCTATTTGTTAGATTGTCCAAGGCTGTGATTAGAGCTTTAGTACCAAGCCTGACTGAGAT i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e canFam3.chr25 42513819 379 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16749 207 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212436148 95 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 12356 1807 - 513109 I e micMur1.scaffold_3075 120293 192 + 176633 I a score=-6216.000000 s mm10.chr1_GL456221_random 135222 2 + 206961 A---G s rn5.chr9 92379437 2 + 121549591 A---G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164861 5 - 10418462 ATAGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251613 2 + 243199373 A---T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635693 2 + 247518478 A---T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585736 2 + 131632457 A---T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708837 2 + 135000294 A---T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755714 2 + 6458163 A---C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94178028 2 + 106825570 A---T i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838524 2 - 32117204 G---T i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1069548 2 - 2169676 A---T i ailMel1.GL192536.1 C 0 C 0 s dasNov3.JH581855 14163 2 - 513109 ---GT i dasNov3.JH581855 I 1807 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e canFam3.chr25 42513819 379 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16749 207 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 52460 580 + 66950 I e felCat5.chrC1 212436148 95 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 120293 192 + 176633 I a score=61413.000000 s mm10.chr1_GL456221_random 135224 7 + 206961 AGGAGGG s rn5.chr9 92379439 7 + 121549591 AGGAGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164866 7 - 10418462 AGGAGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251615 7 + 243199373 AGGAGGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635695 7 + 247518478 AGGAGGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585738 7 + 131632457 AGGAGGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708839 7 + 135000294 AGGAGGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755716 7 + 6458163 AGGAGGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94178030 7 + 106825570 AGGAGGG i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 53040 7 + 66950 AGGAGGG i papHam1.scaffold13267 I 580 C 0 s micMur1.scaffold_3075 120485 7 + 176633 AGGAGGG i micMur1.scaffold_3075 I 192 C 0 s otoGar3.GL873532 28838526 7 - 32117204 AGAAGGG i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 16956 7 - 63237 GGGAGAG i turTru2.JH486691 I 207 I 77 s felCat5.chrC1 212436243 7 + 221441202 AGGAGAG i felCat5.chrC1 I 95 I 76 s ailMel1.GL192536.1 1069550 6 - 2169676 AGGAGG- i ailMel1.GL192536.1 C 0 C 0 s dasNov3.JH581855 14165 7 - 513109 AGAAGGG i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e canFam3.chr25 42513819 379 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e choHof1.scaffold_14362 11158 2878 + 23990 I a score=21024.000000 s mm10.chr1_GL456221_random 135231 6 + 206961 ATAGTT s rn5.chr9 92379446 6 + 121549591 ATAATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164873 6 - 10418462 AGAGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251622 6 + 243199373 AAAAGA i hg19.chr2 C 0 I 3 s panTro4.chr2B 235635702 6 + 247518478 AAAAGA i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119585745 6 + 131632457 AAAAGA i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122708846 6 + 135000294 AAGAGA i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3755723 6 + 6458163 AAAAGA i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94178037 6 + 106825570 AAAAGA i rheMac3.chr12 C 0 I 3 s papHam1.scaffold13267 53047 6 + 66950 AAAAGA i papHam1.scaffold13267 C 0 I 56 s micMur1.scaffold_3075 120492 6 + 176633 GAAAGA i micMur1.scaffold_3075 C 0 I 84 s otoGar3.GL873532 28838533 6 - 32117204 AAAAGA i otoGar3.GL873532 C 0 I 20 s dasNov3.JH581855 14172 6 - 513109 AAAAGA i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e canFam3.chr25 42513819 379 + 51628933 I e ailMel1.GL192536.1 1069556 0 - 2169676 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16963 77 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212436250 76 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I a score=140130.000000 s mm10.chr1_GL456221_random 135237 50 + 206961 ---GCCGGGATGAATCAGGTAGAAATCTTCCCAGTAGGCTA-----TGAACATGGGAC s rn5.chr9 92379452 50 + 121549591 ---ACTGGAATGAATCAGGTGGAAATCTTCTCAGTAGGCTA-----TCAGCATGGGAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164879 50 - 10418462 ---GCAAGAATAAGACGTCTGAATCTCTTCTCAATGGGCTC-----TGAGTGTGGACC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251631 50 + 243199373 ---GCAAGGATATGACATCTGGATCTATTCTCACTGTACGG-----TGAGTGCGGACC i hg19.chr2 I 3 C 0 s panTro4.chr2B 235635711 50 + 247518478 ---GCAAGGATATGACATCTGGATCTATTCTCACTGTACGG-----TGAGTGCGGACC i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119585754 50 + 131632457 ---GCAAGGATACGACATCTGGATCTATTCTCACTGTACGG-----TGAGTGCGGACC i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122708855 50 + 135000294 ---GCAAGGATATGACATCTGGATCTATTCTCACTGTACGA-----TGAGCGCGGACC i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3755732 50 + 6458163 ---GCAAGGAGATGACATCTGGATCTATTCTCACCGTACGG-----TGAGCGCGGACC i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94178046 50 + 106825570 ---GCAAGAGTATAACATCTGGATCTATTCTCACTGTACGG-----TGAGCGTGGACC i rheMac3.chr12 I 3 C 0 s otoGar3.GL873532 28838559 50 - 32117204 ---GGAAGAATATGACGTCTGTCTGTCTTCTCCTTGGGCTG-----TGGGTGTGGACC i otoGar3.GL873532 I 20 C 0 s ailMel1.GL192536.1 1069556 50 - 2169676 ---GCAAGAGTAAGATATCTGGATCTCTTCTCACGGGGCTG-----TGAGCATAGACC i ailMel1.GL192536.1 C 0 C 0 s dasNov3.JH581855 14178 57 - 513109 GCAGCAAAAGTAAGGTGTCTGCATCTCTTTTCATCGGACTGAGCTTTAGGAGAGGAG- i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e canFam3.chr25 42513819 379 + 51628933 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16963 77 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 53053 56 + 66950 I e felCat5.chrC1 212436250 76 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 120498 84 + 176633 I a score=448.000000 s mm10.chr1_GL456221_random 135287 2 + 206961 --TT s rn5.chr9 92379502 2 + 121549591 --CT i rn5.chr9 C 0 I 3 s speTri2.JH393335 4164929 2 - 10418462 --CT i speTri2.JH393335 C 0 I 5 s hg19.chr2 231251681 2 + 243199373 --CT i hg19.chr2 C 0 I 1 s panTro4.chr2B 235635761 2 + 247518478 --CT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119585804 2 + 131632457 --CT i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122708905 2 + 135000294 --CT i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3755782 2 + 6458163 --CT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94178096 2 + 106825570 --CT i rheMac3.chr12 C 0 I 1 s otoGar3.GL873532 28838609 2 - 32117204 --CA i otoGar3.GL873532 C 0 I 3 s canFam3.chr25 42514198 2 + 51628933 --tt i canFam3.chr25 I 379 C 0 s ailMel1.GL192536.1 1069606 2 - 2169676 --TT i ailMel1.GL192536.1 C 0 I 3 s dasNov3.JH581855 14235 2 - 513109 GG-- i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16963 77 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 53053 56 + 66950 I e felCat5.chrC1 212436250 76 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 120498 84 + 176633 I a score=6503.000000 s mm10.chr1_GL456221_random 135289 2 + 206961 AA s rn5.chr9 92379507 2 + 121549591 AA i rn5.chr9 I 3 C 0 s speTri2.JH393335 4164936 2 - 10418462 GA i speTri2.JH393335 I 5 C 0 s hg19.chr2 231251684 1 + 243199373 -A i hg19.chr2 I 1 I 3 s panTro4.chr2B 235635764 1 + 247518478 -A i panTro4.chr2B I 1 I 3 s gorGor3.chr2B 119585807 1 + 131632457 -A i gorGor3.chr2B I 1 I 3 s ponAbe2.chr2b 122708908 1 + 135000294 -A i ponAbe2.chr2b I 1 I 3 s nomLeu2.GL397366 3755785 1 + 6458163 -A i nomLeu2.GL397366 I 1 I 3 s rheMac3.chr12 94178099 1 + 106825570 -A i rheMac3.chr12 I 1 I 2 s papHam1.scaffold13267 53109 1 + 66950 -A i papHam1.scaffold13267 I 56 I 37 s otoGar3.GL873532 28838614 2 - 32117204 GA i otoGar3.GL873532 I 3 C 0 s canFam3.chr25 42514200 2 + 51628933 AA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069611 2 - 2169676 AA i ailMel1.GL192536.1 I 3 C 0 s dasNov3.JH581855 14237 2 - 513109 CA i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16963 77 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212436250 76 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 120498 84 + 176633 I a score=42088.000000 s mm10.chr1_GL456221_random 135291 17 + 206961 GGAGGAGGAGGAA--TGGG s rn5.chr9 92379509 17 + 121549591 GAAAGAGGGGGAA--TGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164938 17 - 10418462 GAAGGGGGTGGAA--GGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251688 13 + 243199373 ----GAGGAGGGA--GGGG i hg19.chr2 I 3 C 0 s panTro4.chr2B 235635768 13 + 247518478 ----GAGGAGGGA--GGGG i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119585811 13 + 131632457 ----GAGGAGGGA--GGGG i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122708912 15 + 135000294 ----GAGGAGGGAGGGGGG i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3755789 13 + 6458163 ----GAGGAGGGA--GGGG i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94178102 13 + 106825570 ----GAGGAGGGA--GGGA i rheMac3.chr12 I 2 C 0 s otoGar3.GL873532 28838616 13 - 32117204 ----GAGTAGGGA--GGGG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42514202 10 + 51628933 -------GGGAAA--AGGG i canFam3.chr25 C 0 I 7 s ailMel1.GL192536.1 1069613 10 - 2169676 -------GAGGAA--TGAG i ailMel1.GL192536.1 C 0 I 2 s dasNov3.JH581855 14239 17 - 513109 GGAAGAAGAGAGA--GAGG i dasNov3.JH581855 C 0 I 2 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16963 77 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 53110 37 + 66950 I e felCat5.chrC1 212436250 76 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 120498 84 + 176633 I a score=1643.000000 s mm10.chr1_GL456221_random 135308 1 + 206961 C s rn5.chr9 92379526 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164955 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251701 1 + 243199373 T i hg19.chr2 C 0 I 4 s panTro4.chr2B 235635781 1 + 247518478 T i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119585824 1 + 131632457 T i gorGor3.chr2B C 0 I 4 s ponAbe2.chr2b 122708927 1 + 135000294 T i ponAbe2.chr2b C 0 I 4 s nomLeu2.GL397366 3755802 1 + 6458163 T i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94178115 1 + 106825570 T i rheMac3.chr12 C 0 I 4 s otoGar3.GL873532 28838629 1 - 32117204 T i otoGar3.GL873532 C 0 I 10 s dasNov3.JH581855 14258 1 - 513109 C i dasNov3.JH581855 I 2 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e canFam3.chr25 42514212 7 + 51628933 I e ailMel1.GL192536.1 1069623 2 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 16963 77 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 53110 37 + 66950 I e felCat5.chrC1 212436250 76 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 120498 84 + 176633 I a score=-5693.000000 s mm10.chr1_GL456221_random 135309 4 + 206961 TAGT s rn5.chr9 92379527 4 + 121549591 TATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164956 1 - 10418462 ---A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251706 4 + 243199373 CATT i hg19.chr2 I 4 I 13 s panTro4.chr2B 235635786 4 + 247518478 CAGT i panTro4.chr2B I 4 I 13 s gorGor3.chr2B 119585829 4 + 131632457 CAGT i gorGor3.chr2B I 4 I 13 s ponAbe2.chr2b 122708932 4 + 135000294 CAGT i ponAbe2.chr2b I 4 I 13 s nomLeu2.GL397366 3755807 4 + 6458163 CAGT i nomLeu2.GL397366 I 4 I 13 s rheMac3.chr12 94178120 4 + 106825570 CAGT i rheMac3.chr12 I 4 I 13 s micMur1.scaffold_3075 120582 2 + 176633 GA-- i micMur1.scaffold_3075 I 84 I 1 s otoGar3.GL873532 28838640 2 - 32117204 TA-- i otoGar3.GL873532 I 10 I 1 s turTru2.JH486691 17040 4 - 63237 CAGA i turTru2.JH486691 I 77 C 0 s canFam3.chr25 42514219 2 + 51628933 --TT i canFam3.chr25 I 7 C 0 s dasNov3.JH581855 14259 4 - 513109 GAGT i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e ailMel1.GL192536.1 1069623 2 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 53110 37 + 66950 I e felCat5.chrC1 212436250 76 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I a score=6047.000000 s mm10.chr1_GL456221_random 135313 2 + 206961 CC s rn5.chr9 92379531 2 + 121549591 TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164957 2 - 10418462 CC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251723 1 + 243199373 -C i hg19.chr2 I 13 C 0 s panTro4.chr2B 235635803 1 + 247518478 -C i panTro4.chr2B I 13 C 0 s gorGor3.chr2B 119585846 1 + 131632457 -C i gorGor3.chr2B I 13 C 0 s ponAbe2.chr2b 122708949 1 + 135000294 -C i ponAbe2.chr2b I 13 C 0 s nomLeu2.GL397366 3755824 1 + 6458163 -C i nomLeu2.GL397366 I 13 C 0 s rheMac3.chr12 94178137 1 + 106825570 -C i rheMac3.chr12 I 13 C 0 s papHam1.scaffold13267 53147 1 + 66950 -C i papHam1.scaffold13267 I 37 C 0 s micMur1.scaffold_3075 120585 1 + 176633 -C i micMur1.scaffold_3075 I 1 C 0 s otoGar3.GL873532 28838643 1 - 32117204 -T i otoGar3.GL873532 I 1 C 0 s turTru2.JH486691 17044 2 - 63237 AC i turTru2.JH486691 C 0 I 1795 s canFam3.chr25 42514221 2 + 51628933 AC i canFam3.chr25 C 0 I 3 s dasNov3.JH581855 14263 2 - 513109 GC i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e ailMel1.GL192536.1 1069623 2 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212436250 76 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I a score=6836.000000 s mm10.chr1_GL456221_random 135315 2 + 206961 CA s rn5.chr9 92379533 2 + 121549591 CA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164959 2 - 10418462 CA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251724 2 + 243199373 TG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635804 2 + 247518478 TG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585847 2 + 131632457 TG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708950 2 + 135000294 TG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755825 2 + 6458163 TG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94178138 2 + 106825570 TG i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 53148 2 + 66950 TG i papHam1.scaffold13267 C 0 C 0 s micMur1.scaffold_3075 120586 2 + 176633 CA i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28838644 2 - 32117204 TG i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212436326 2 + 221441202 CA i felCat5.chrC1 I 76 I 1722 s canFam3.chr25 42514226 2 + 51628933 TA i canFam3.chr25 I 3 I 2 s dasNov3.JH581855 14265 2 - 513109 TG i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e ailMel1.GL192536.1 1069623 2 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 17046 1795 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e choHof1.scaffold_14362 11158 2878 + 23990 I a score=6836.000000 s mm10.chr1_GL456221_random 135317 3 + 206961 AGC s rn5.chr9 92379535 3 + 121549591 AGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164961 3 - 10418462 GAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251726 3 + 243199373 GAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635806 3 + 247518478 GAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585849 3 + 131632457 GAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708952 3 + 135000294 GAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755827 3 + 6458163 GAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94178140 3 + 106825570 GAG i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 53150 3 + 66950 GAG i papHam1.scaffold13267 C 0 I 73 s micMur1.scaffold_3075 120588 3 + 176633 GAG i micMur1.scaffold_3075 C 0 I 3577 s otoGar3.GL873532 28838646 3 - 32117204 CAA i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42514230 3 + 51628933 TAC i canFam3.chr25 I 2 C 0 s dasNov3.JH581855 14267 3 - 513109 GAG i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e ailMel1.GL192536.1 1069623 2 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 17046 1795 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I a score=155719.000000 s mm10.chr1_GL456221_random 135320 67 + 206961 ATGACTC--------AGCTTTATA-------GAGTCTCAG-------TGGCATCTCGAACCAGGAG--------------------------------------GAGGAGAGTTCCTTTGAAAGCCA s rn5.chr9 92379538 68 + 121549591 AAAACTT--------AGCCTTCTA-------GAGTGTCAG-------TGACATCTTGAAGCCCAAG-------------------------------------AGTGGAGAGTCCCTTGGAAAGCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4164964 69 - 10418462 ATGTCCT--------TGCTATCCA-------GAGTCCTAC-------TGGTGTCTTGGGTGAGAGG-----------------------------------GGAGAGGAGAGCCCCTGGGAGAGCC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251729 73 + 243199373 ATGTCCT--------GGACTTCCA-------GAGTCCACT-------TGGCATCTTGCGTGGGAGA--------------------------------GGAGGGGAGGAGAGCTTCTCAGAGAGCCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235635809 73 + 247518478 ATGTCCT--------GGACTTCCA-------GAGTCCACT-------TGGCATCTTGCGTGGGAGA--------------------------------GGAGGGGAGGAGAGCTTCTCAGAGAGCCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119585852 73 + 131632457 ATGTCCT--------GGACTTCCA-------GAGTCCACT-------TGGCATCTTGCGTGGGAGA--------------------------------GGAGGGGAGGACAGCTTCTCAGAGAGCCA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122708955 73 + 135000294 ATGTCCT--------GGACTTCCA-------GAGTCCTCT-------TGGCATCTTGCATGGGAGA--------------------------------GGAGGGGAGGAGAGCTTCTCGGAGAGCCA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3755830 73 + 6458163 ATGTCCT--------GGACTTCCA-------GAGTCCACT-------TGGCATCTTGCGTGGGAGA--------------------------------GGAGGGGAGGAGAGCTTCTCAGAGAGCCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94178143 73 + 106825570 ATGTCCT--------GGCCTTCCA-------GAGTCCCCT-------TGGCATCTTTCGTGGGAGA--------------------------------AGAGGGGAGGAGAGCTTCTCAGAGAGCCA i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28838651 71 - 32117204 --GTACT--------GGCCTTCCA-------GAGTTCCAC-------AGGCATCTTGAGTGAGAGA--------------------------------AGATGGGAGGAGAGCTCCTCAGATAGCCA i otoGar3.GL873532 I 2 I 1 s canFam3.chr25 42514233 75 + 51628933 TTAACTCATAGTGATAGAACCCCATGGAAAAGAGTC-----------TGGCG----AAGGGTTAAA--------------------------------GAAGAAAAAGAGAATAACTT-----TCAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1069625 76 - 2169676 ---------------AGAGCACCA---GAGAGAGTCCATAACCACTTTGGCATCT-TGGGGGGAGA--------------------------------AGAGGTGAAGAGGGCCCCTTAGAGAACCG i ailMel1.GL192536.1 I 2 C 0 s dasNov3.JH581855 14270 111 - 513109 ATGGCCT--------GGTCTTCCA-------GGGTACCTCGCCACTTTGATATTTGGAGAgggacgtgggatgtgaggatgtgaggatgtgggatgtgggatgtgaggGGAGCCCTTCAGAGAATC- i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 17046 1795 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 53153 73 + 66950 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 120591 3577 + 176633 I a score=1167.000000 s mm10.chr1_GL456221_random 135387 1 + 206961 C s rn5.chr9 92379606 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231251802 1 + 243199373 C i hg19.chr2 C 0 I 1 s panTro4.chr2B 235635882 1 + 247518478 C i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119585925 1 + 131632457 C i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122709028 1 + 135000294 G i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3755903 1 + 6458163 C i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94178216 1 + 106825570 C i rheMac3.chr12 C 0 I 1 s papHam1.scaffold13267 53226 1 + 66950 C i papHam1.scaffold13267 I 73 I 1672 s canFam3.chr25 42514308 1 + 51628933 T i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1069701 1 - 2169676 T i ailMel1.GL192536.1 C 0 I 1 e saiBol1.JH378144 7787 3467 + 18451090 I e otoGar3.GL873532 28838722 1 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4165033 0 - 10418462 C e turTru2.JH486691 17046 1795 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 14381 0 - 513109 C e micMur1.scaffold_3075 120591 3577 + 176633 I a score=120737.000000 s mm10.chr1_GL456221_random 135388 51 + 206961 TTTGAGTGGACGACCTTATG---TTGCCTG------------------GTGGTCCCGCCATCCACAGAGAGG s rn5.chr9 92379607 51 + 121549591 TTTGAGTGGAAGACCTTATG---TTGCGTG------------------GTGGTCCCACCATCCACAGAGAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4165033 26 - 10418462 ----------------------------TG------------------GTGAATGTGCTGGCCAGAGAGAGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251804 51 + 243199373 CCTGTGTGGCTGATGTTCTA---TTGCCTG------------------GAAACCTCATCTTCCAGAGGCAGG i hg19.chr2 I 1 C 0 s panTro4.chr2B 235635884 51 + 247518478 CCTGTGTGGCTGATGTTCTA---TTGCCTG------------------GAAACCTCATCTTCCAGAGGCAGG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119585927 51 + 131632457 CCTGTGTGGCTGATGTTCTA---TTGCCTG------------------GAAACCTCATCTTCCAGAGGCAGG i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122709030 51 + 135000294 CCTGTGTGGCTGATGTTCTA---TTGCCTA------------------GAAACCTCATCTTCCAGAGGCAGG i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3755905 51 + 6458163 CCTGTGTGGCTGATGTTCTA---TTGCCTG------------------GAAACCTTATCTTCCAGCGGCAGG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94178218 51 + 106825570 CCTGTGTGGCTGATGTTCTA---TTGCCTG------------------GAAACCTCATCTTCCAGAGGCAGG i rheMac3.chr12 I 1 C 0 s otoGar3.GL873532 28838723 51 - 32117204 CCTGTGTGGGTGATCTCGTA---TTGACTT------------------GTGACCTCACCTTCCAGGGGGAAG i otoGar3.GL873532 I 1 I 1237 s canFam3.chr25 42514310 60 + 51628933 ACTAAACAGCTAATTTCCTGTGCTTTCCTGTTTTCTGTGATTTTAGTAATAAACCCACTT------------ i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1069703 51 - 2169676 CCTGGGTAGATGACCTTCTA---TTTCCCG------------------GTGACCCCACTTTCTGGAGGGAGA i ailMel1.GL192536.1 I 1 C 0 s dasNov3.JH581855 14381 41 - 513109 --TGTGTGTAGGACCTTCTG---TTGCCTG--------------------------ACTTTCCAGAAGGAGG i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 17046 1795 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 53227 1672 + 66950 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 120591 3577 + 176633 I a score=21921.000000 s mm10.chr1_GL456221_random 135439 6 + 206961 AAGCAA s rn5.chr9 92379658 6 + 121549591 AAGCAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4165059 6 - 10418462 AAGCAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231251855 6 + 243199373 CAGCAA i hg19.chr2 C 0 I 1575 s panTro4.chr2B 235635935 6 + 247518478 CAGCAA i panTro4.chr2B C 0 I 1584 s gorGor3.chr2B 119585978 6 + 131632457 CAGCAA i gorGor3.chr2B C 0 I 2464 s ponAbe2.chr2b 122709081 6 + 135000294 CAGCAA i ponAbe2.chr2b C 0 I 1584 s nomLeu2.GL397366 3755956 6 + 6458163 CAGCAA i nomLeu2.GL397366 C 0 I 2409 s rheMac3.chr12 94178269 6 + 106825570 CAGCAA i rheMac3.chr12 C 0 I 1614 s ailMel1.GL192536.1 1069754 6 - 2169676 GAGCAA i ailMel1.GL192536.1 C 0 C 0 s dasNov3.JH581855 14422 6 - 513109 AAGTGA i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e otoGar3.GL873532 28838774 1237 - 32117204 I e canFam3.chr25 42514370 0 + 51628933 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 17046 1795 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 53227 1672 + 66950 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 120591 3577 + 176633 I a score=2010.000000 s mm10.chr1_GL456221_random 135445 3 + 206961 CAG s rn5.chr9 92379664 3 + 121549591 GAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4165065 3 - 10418462 GAG i speTri2.JH393335 C 0 I 1497 s ailMel1.GL192536.1 1069760 3 - 2169676 GAG i ailMel1.GL192536.1 C 0 I 1696 s dasNov3.JH581855 14428 3 - 513109 GAG i dasNov3.JH581855 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e ponAbe2.chr2b 122709087 1584 + 135000294 I e otoGar3.GL873532 28838774 1237 - 32117204 I e canFam3.chr25 42514370 0 + 51628933 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 17046 1795 - 63237 I e rheMac3.chr12 94178275 1614 + 106825570 I e equCab2.chr6 17877608 1310 + 84719076 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e panTro4.chr2B 235635941 1584 + 247518478 I e hg19.chr2 231251861 1575 + 243199373 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 53227 1672 + 66950 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e micMur1.scaffold_3075 120591 3577 + 176633 I a score=422.000000 s mm10.chr1_GL456221_random 135448 1 + 206961 T s rn5.chr9 92379667 1 + 121549591 T i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 124168 1 + 176633 T i micMur1.scaffold_3075 I 3577 C 0 s canFam3.chr25 42514370 1 + 51628933 C i canFam3.chr25 C 0 C 0 s dasNov3.JH581855 14431 1 - 513109 T i dasNov3.JH581855 C 0 I 3161 e saiBol1.JH378144 7787 3467 + 18451090 I e ponAbe2.chr2b 122709087 1584 + 135000294 I e otoGar3.GL873532 28838774 1237 - 32117204 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4165068 1497 - 10418462 I e turTru2.JH486691 17046 1795 - 63237 I e rheMac3.chr12 94178275 1614 + 106825570 I e equCab2.chr6 17877608 1310 + 84719076 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e panTro4.chr2B 235635941 1584 + 247518478 I e hg19.chr2 231251861 1575 + 243199373 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 53227 1672 + 66950 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I a score=6558.000000 s mm10.chr1_GL456221_random 135449 6 + 206961 TTTAAT s rn5.chr9 92379668 6 + 121549591 ATTGGT i rn5.chr9 C 0 C 0 s hg19.chr2 231253436 6 + 243199373 TTTAAT i hg19.chr2 I 1575 N 0 s panTro4.chr2B 235637525 6 + 247518478 TTTAAT i panTro4.chr2B I 1584 I 2 s ponAbe2.chr2b 122710671 6 + 135000294 TTTAAT i ponAbe2.chr2b I 1584 I 2 s micMur1.scaffold_3075 124169 6 + 176633 CCTAAT i micMur1.scaffold_3075 C 0 C 0 s canFam3.chr25 42514371 6 + 51628933 CCTAAT i canFam3.chr25 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e otoGar3.GL873532 28838774 1237 - 32117204 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4165068 1497 - 10418462 I e turTru2.JH486691 17046 1795 - 63237 I e rheMac3.chr12 94178275 1614 + 106825570 I e equCab2.chr6 17877608 1310 + 84719076 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 53227 1672 + 66950 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=4288.000000 s mm10.chr1_GL456221_random 135455 3 + 206961 TTC s rn5.chr9 92379674 3 + 121549591 TTC i rn5.chr9 C 0 C 0 s hg19.chr2 231152777 3 + 243199373 TTT i hg19.chr2 N 0 C 0 s panTro4.chr2B 235637533 3 + 247518478 TTT i panTro4.chr2B I 2 C 0 s ponAbe2.chr2b 122710679 3 + 135000294 TTT i ponAbe2.chr2b I 2 C 0 s rheMac3.chr12 94179889 3 + 106825570 TTT i rheMac3.chr12 I 1614 C 0 s papHam1.scaffold13267 54899 3 + 66950 TTT i papHam1.scaffold13267 I 1672 I 291 s micMur1.scaffold_3075 124175 1 + 176633 --T i micMur1.scaffold_3075 C 0 I 4 s canFam3.chr25 42514377 3 + 51628933 TGC i canFam3.chr25 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e otoGar3.GL873532 28838774 1237 - 32117204 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4165068 1497 - 10418462 I e turTru2.JH486691 17046 1795 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=22906.000000 s mm10.chr1_GL456221_random 135458 23 + 206961 TATGACA---------GCTGAATTACCTACCA s rn5.chr9 92379677 32 + 121549591 TACAACAGCTTATGTGGCTGAATTACCCAATA i rn5.chr9 C 0 I 1 s hg19.chr2 231152780 22 + 243199373 ----------TATGAAGCTGTACTAACTAGTG i hg19.chr2 C 0 I 2 s panTro4.chr2B 235637536 22 + 247518478 ----------TATGAAGCTATACTAACTATTG i panTro4.chr2B C 0 I 2 s ponAbe2.chr2b 122710682 22 + 135000294 ----------TATGAAGCTGTACTAACTATTG i ponAbe2.chr2b C 0 I 2 s rheMac3.chr12 94179892 22 + 106825570 ----------TATGAAACTGTACTAACTATTG i rheMac3.chr12 C 0 I 2 s micMur1.scaffold_3075 124180 22 + 176633 ----------TATGTAGCTGGACTAACTGTTG i micMur1.scaffold_3075 I 4 I 2 s canFam3.chr25 42514380 22 + 51628933 ----------TTTACAGCTTTACTAACTGTTG i canFam3.chr25 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e otoGar3.GL873532 28838774 1237 - 32117204 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4165068 1497 - 10418462 I e turTru2.JH486691 17046 1795 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 54902 291 + 66950 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=19147.000000 s mm10.chr1_GL456221_random 135481 12 + 206961 --AGATGCTTCCTA s rn5.chr9 92379710 12 + 121549591 --AGACACTTCCTG i rn5.chr9 I 1 C 0 s speTri2.JH393335 4166565 12 - 10418462 --AAATGTGTCCCA i speTri2.JH393335 I 1497 C 0 s hg19.chr2 231152804 12 + 243199373 --AAATGTATCCTA i hg19.chr2 I 2 I 9 s panTro4.chr2B 235637560 12 + 247518478 --AAACGTATCTTA i panTro4.chr2B I 2 I 9 s ponAbe2.chr2b 122710706 12 + 135000294 --AAACGTATCCTA i ponAbe2.chr2b I 2 I 9 s rheMac3.chr12 94179916 12 + 106825570 --AAATGTATCCTA i rheMac3.chr12 I 2 I 9 s micMur1.scaffold_3075 124204 12 + 176633 --AAATATATTCCA i micMur1.scaffold_3075 I 2 I 9 s canFam3.chr25 42514402 14 + 51628933 AGAGATGTGTATAA i canFam3.chr25 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e otoGar3.GL873532 28838774 1237 - 32117204 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 17046 1795 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 54902 291 + 66950 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=43998.000000 s mm10.chr1_GL456221_random 135493 24 + 206961 ---------TCTACTCACTGTGTCTGAGAGAGT s rn5.chr9 92379722 24 + 121549591 ---------TTTTCTCACTGTGTTTGAAATAGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166577 24 - 10418462 ---------TTTAGTCAATGTATTTGGGAGAGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231152825 24 + 243199373 ---------TTTCCAAAATGTGTCAAGGAAAGA i hg19.chr2 I 9 C 0 s panTro4.chr2B 235637581 24 + 247518478 ---------TTTCCAAAATGTATCAAGGAAAGA i panTro4.chr2B I 9 C 0 s ponAbe2.chr2b 122710727 24 + 135000294 ---------TTTCCAAAATGTATCAAGGAAAGA i ponAbe2.chr2b I 9 C 0 s rheMac3.chr12 94179937 24 + 106825570 ---------TTTCCAAAATGTGTCAAGGAAAGA i rheMac3.chr12 I 9 C 0 s micMur1.scaffold_3075 124225 23 + 176633 ---------TTTCCAAAAGGTGTCA-GTAGAGA i micMur1.scaffold_3075 I 9 C 0 s otoGar3.GL873532 28840011 24 - 32117204 ---------TTTCCACACTGTGTCAGGGAGGGA i otoGar3.GL873532 I 1237 C 0 s canFam3.chr25 42514416 33 + 51628933 TTTAGGTCATTTTCAAAATATGTCAGGGAGAGA i canFam3.chr25 C 0 I 17 e saiBol1.JH378144 7787 3467 + 18451090 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 17046 1795 - 63237 I e equCab2.chr6 17877608 1310 + 84719076 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 54902 291 + 66950 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=40598.000000 s mm10.chr1_GL456221_random 135517 30 + 206961 AACAAGAATTTTGATGCTGCAGCTGAAACA s rn5.chr9 92379746 30 + 121549591 AACAAGAATTTTGATGATGTGGCTGAAACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166601 30 - 10418462 AATGAGAAACTCTATGTCATGTCTGAAACC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231152849 30 + 243199373 AGGAAGTAAGTTGGTGATGGATCTACAACC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235637605 30 + 247518478 AGGAAGTAAGTTGGTGATGGATCTACAACC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122710751 30 + 135000294 AGGAAGTAAGTTGGTGATGGATCTACAACC i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94179961 30 + 106825570 AGGAAGTAAGTTGGTGATTGATCTACAATC i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 124248 30 + 176633 AACAAGTAACTTGGTGATGCATCGACAACC i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840035 18 - 32117204 AGCAAATAACTTGGTGA------------C i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42514466 11 + 51628933 AACAAGTAACT------------------- i canFam3.chr25 I 17 I 17 s equCab2.chr6 17878918 30 + 84719076 AACACGTAACTTGGTGATAGGTCTAAACCA i equCab2.chr6 I 1310 I 8 e saiBol1.JH378144 7787 3467 + 18451090 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 17046 1795 - 63237 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 54902 291 + 66950 I e felCat5.chrC1 212436328 1722 + 221441202 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=127643.000000 s mm10.chr1_GL456221_random 135547 57 + 206961 AGGTCC--AGAGCCCT-GGGCCACTACAA---GACTGGCTGCCTTGACCTGCAGACTCTCCAG s rn5.chr9 92379776 57 + 121549591 AGGTTC--AGAGCCCT-GTGCCACTACAA---TGCTGCCTGCTTTGATCTGCAAACTCTCAAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166631 59 - 10418462 AGACTCCAGGGGCTCA-GGGCTACTGCAG---CGCTGCCTTCATTGAACAGATAACGTTCAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231152879 60 + 243199373 AGATCCCAGGGGCCCAGGGGCCACTAAAG---TGCTACTTTCACTGAAATGATAAATTTCAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235637635 60 + 247518478 AGACCCCGGGGCCCCAGGGGTCACTAAAG---TGCTACTTCCACTGAAATGATAAATTTCAAG i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122710781 60 + 135000294 AGACCCCGGGGCCCCAGGGGTCACTAAAG---TACTACTTCCACTGAAAAGATAAATTTCAAG i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94179991 60 + 106825570 AGACCCCGGGGGCTCAGGGGCCACTAAAG---TGCTACTTCCACTGAAATGATAAATTTCAAG i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 124278 60 + 176633 AGACCTTAGGGGTCTGGGGGCCACTGCAG---TGCTGCCTCCACTGAACCGATGAACTTCAAG i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840053 51 - 32117204 GGACCCCA---------GGGCTGCCGCAG---TGCTGCCTCTCCTGAACTGATAAGCATCCAG i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212438050 53 + 221441202 ---------AGGTCCAGGGGCCACTACAGGAATGCTGTCCCCACTGAACTGACAACTTCCAA- i felCat5.chrC1 I 1722 I 6 s canFam3.chr25 42514494 54 + 51628933 ---------GGGTCCAGGGGCCACTAGAATGATTCTGTCTTCCCTGAACTGATAGCTTTCGAG i canFam3.chr25 I 17 I 5 s equCab2.chr6 17878956 54 + 84719076 ---------GGATCCAGGCGTCACTTCAGTGCTGCTGTCTCCACTGAACTGATAACTTTCAAG i equCab2.chr6 I 8 I 5 e saiBol1.JH378144 7787 3467 + 18451090 I e ailMel1.GL192536.1 1069763 1696 - 2169676 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 17046 1795 - 63237 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 54902 291 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=-33130.000000 s mm10.chr1_GL456221_random 135604 9 + 206961 AGTGGAT--------------------------------AC s rn5.chr9 92379833 5 + 121549591 AC----T--------------------------------AT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166690 9 - 10418462 GCTGCAA--------------------------------AT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231152939 9 + 243199373 GCTGGAG--------------------------------AT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235637695 9 + 247518478 GCTGAAG--------------------------------AT i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122710841 9 + 135000294 GCTGAAG--------------------------------AT i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94180051 9 + 106825570 GCTGGAG--------------------------------AT i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 124338 9 + 176633 GCTGGAA--------------------------------AT i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840104 9 - 32117204 GCAGGAA--------------------------------GT i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 18841 7 - 63237 --AGCAG--------------------------------AC i turTru2.JH486691 I 1795 C 0 s felCat5.chrC1 212438109 32 + 221441202 --AATTGTCTGTTGCCATACAACCCACAAATT-------AT i felCat5.chrC1 I 6 C 0 s canFam3.chr25 42514553 35 + 51628933 --AATTG----TTGCCATGTAACCTACATTATTTAGCTAAT i canFam3.chr25 I 5 C 0 s ailMel1.GL192536.1 1071459 7 - 2169676 --AGTTG--------------------------------AT i ailMel1.GL192536.1 I 1696 C 0 s equCab2.chr6 17879015 29 + 84719076 --AATAGTCTATTGCCATATAAAGGGTAT----------AT i equCab2.chr6 I 5 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 54902 291 + 66950 I e choHof1.scaffold_14362 11158 2878 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=-24943.000000 s mm10.chr1_GL456221_random 135613 5 + 206961 AA-----------------------------TCT s rn5.chr9 92379838 5 + 121549591 AA-----------------------------TCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166699 4 - 10418462 AG-----------------------------TC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231152948 5 + 243199373 AG-----------------------------TTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235637704 5 + 247518478 AG-----------------------------TCC i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122710850 5 + 135000294 AG-----------------------------TCC i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94180060 5 + 106825570 AG-----------------------------CCC i rheMac3.chr12 C 0 C 0 s micMur1.scaffold_3075 124347 5 + 176633 AG-----------------------------ATC i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840113 5 - 32117204 TG-----------------------------TTC i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 18848 5 - 63237 CC-----------------------------TTT i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438141 14 + 221441202 TTAGCTGATCC--------------------TTC i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514588 5 + 51628933 CG-----------------------------TCC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071466 5 - 2169676 CC-----------------------------TCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879044 34 + 84719076 ATACATAACCCACAAATTATTTAGCTGACACTTC i equCab2.chr6 C 0 C 0 s choHof1.scaffold_14362 14036 5 + 23990 AG-----------------------------CCT i choHof1.scaffold_14362 I 2878 I 871 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 54902 291 + 66950 I e dasNov3.JH581855 14432 3161 - 513109 I a score=31512.000000 s mm10.chr1_GL456221_random 135618 31 + 206961 --CTGCCACACACAGGG----TGTCACCC-AGCAGTGA s rn5.chr9 92379843 35 + 121549591 --CTGCCAGACACAGGGTGTCTGTCATCC-AGCAGTGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166703 27 - 10418462 --AGGCCATATCCAGGG--------AACA-GTCTGTGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231152953 32 + 243199373 -ATTGCCGTATAAAGGG----TATAACCC-ATAAGTGA i hg19.chr2 C 0 I 39 s panTro4.chr2B 235637709 32 + 247518478 -ATTGCTATATAAAGGG----TATAACCC-ATAAGTGA i panTro4.chr2B C 0 I 39 s ponAbe2.chr2b 122710855 32 + 135000294 -ACTGCTGTATAAAGGG----TATAACCC-ATAAGTTA i ponAbe2.chr2b C 0 I 39 s rheMac3.chr12 94180065 32 + 106825570 -ATTGCTGTATAAAGGG----TATAACCC-ATAAGTGA i rheMac3.chr12 C 0 I 39 s micMur1.scaffold_3075 124352 32 + 176633 -ATTGCTATACAAAGGG----TACAACCT-ATAAGTTA i micMur1.scaffold_3075 C 0 I 39 s otoGar3.GL873532 28840118 33 - 32117204 -ATTTCTGTATAAAGGG----TACAACCTAAAAAGTTA i otoGar3.GL873532 C 0 I 35 s turTru2.JH486691 18853 24 - 63237 CCCTgctgcacagagag----t------c-agaga--- i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438155 24 + 221441202 TCTTGCTACATCAAGAG----T------C-ACAGG--- i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514593 24 + 51628933 TTTTGCTATGTAGAGAG----T------C-ACAAG--- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071471 24 - 2169676 CTTTGCTACATAGAAAG----T------C-ACAGG--- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879078 24 + 84719076 TCTTgctgtacagagag----t------c-acagg--- i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119585984 2464 + 131632457 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 54902 291 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=154106.000000 s mm10.chr1_GL456221_random 135649 45 + 206961 TTGTACAAGAAGG-TGACCCAGAGTGTTGGAC---AAAGACCTGAGTCC s rn5.chr9 92379878 44 + 121549591 -TGTACATGAAGG-TGACCCAGAGTGTTGGGC---AAAGACCTGGGTCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166730 44 - 10418462 CTGCACACCAAGG-TGG-CCAACGtggtggtc---agaggacttgtcct i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153024 46 + 243199373 TTgcacactaagggtgaaaaagagttgtggtt---agagatctgtgtcc i hg19.chr2 I 39 I 1 s panTro4.chr2B 235637780 46 + 247518478 TTGCACACTAAGGTTGAACCAGAGTTGTGGTT---AGAGATCTGTGTCC i panTro4.chr2B I 39 I 1 s gorGor3.chr2B 119588448 46 + 131632457 TTGCACACTAAGGTTGAaccagagttgtggtt---agagatctgtgtcc i gorGor3.chr2B I 2464 I 1 s ponAbe2.chr2b 122710926 46 + 135000294 TTGCACACTAAGGTTGAaccagagttgtggtt---agagatctgtgtcc i ponAbe2.chr2b I 39 I 1 s rheMac3.chr12 94180136 46 + 106825570 TTGCACACTAAGGTTGAACCAGAGTTGTGGTT---AGAGATCTGTGTCC i rheMac3.chr12 I 39 I 1 s micMur1.scaffold_3075 124423 44 + 176633 TTGCATACCAAG--TAAACCAGAGTAGCCATC---AGAGAGCTGTGTCC i micMur1.scaffold_3075 I 39 I 2 s otoGar3.GL873532 28840186 44 - 32117204 TTGCATATTAAG--TGAACCAGAGGTGTGGTC---AGCGTTCTGTGCCC i otoGar3.GL873532 I 35 I 2 s turTru2.JH486691 18877 43 - 63237 ttgcacaccatgggtggcctggagtggtagtc---agaagtc--tgtc- i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438179 42 + 221441202 TTGCACACCA------GCCAAGAGTAGCGGTCAATAGTAGTCTGTGTC- i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514617 45 + 51628933 TTGCACACCACAGGTAGCCTAGAGTGGTTGTC---AGTTGTCTTTGTC- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071495 45 - 2169676 TTGCACACCACAGGTGGCCTGTAGTGGTGGCC---AGTAGTCTTTGTT- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879102 45 + 84719076 ttgcatatcactggtgacctggagtcgtggtc---agaagactatatc- i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 54902 291 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=3673.000000 s mm10.chr1_GL456221_random 135694 3 + 206961 A-AG s rn5.chr9 92379922 3 + 121549591 A-AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166774 4 - 10418462 aggg i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153071 2 + 243199373 --aa i hg19.chr2 I 1 I 2 s panTro4.chr2B 235637827 2 + 247518478 --AA i panTro4.chr2B I 1 I 2 s gorGor3.chr2B 119588495 2 + 131632457 --aa i gorGor3.chr2B I 1 I 2 s ponAbe2.chr2b 122710973 2 + 135000294 --aa i ponAbe2.chr2b I 1 I 2 s rheMac3.chr12 94180183 2 + 106825570 --AA i rheMac3.chr12 I 1 I 18 s papHam1.scaffold13267 55193 2 + 66950 --AA i papHam1.scaffold13267 I 291 I 29 s micMur1.scaffold_3075 124469 2 + 176633 --AG i micMur1.scaffold_3075 I 2 I 1 s otoGar3.GL873532 28840232 2 - 32117204 --AG i otoGar3.GL873532 I 2 I 1 e saiBol1.JH378144 7787 3467 + 18451090 I e canFam3.chr25 42514662 0 + 51628933 C e ailMel1.GL192536.1 1071540 0 - 2169676 C e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 18920 0 - 63237 C e equCab2.chr6 17879147 0 + 84719076 C e nomLeu2.GL397366 3755962 2409 + 6458163 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e felCat5.chrC1 212438221 0 + 221441202 C e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=-32045.000000 s mm10.chr1_GL456221_random 135697 10 + 206961 -TTTT---CTCTT--C s rn5.chr9 92379925 10 + 121549591 -TTTT---CTCTT--C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166778 10 - 10418462 -tttt---cttgc--c i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153075 9 + 243199373 -cttt---ctttt--- i hg19.chr2 I 2 C 0 s panTro4.chr2B 235637831 9 + 247518478 -CTTT---TTGGC--- i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119588499 9 + 131632457 -cttt---ttggc--- i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122710977 9 + 135000294 -cttt---ttggc--- i ponAbe2.chr2b I 2 C 0 s rheMac3.chr12 94180203 10 + 106825570 -tttt---tttttt-- i rheMac3.chr12 I 18 C 0 s micMur1.scaffold_3075 124472 13 + 176633 -CTTTTTCTTCTT-C- i micMur1.scaffold_3075 I 1 C 0 s otoGar3.GL873532 28840235 10 - 32117204 -CTTT---CTCTT-C- i otoGar3.GL873532 I 1 C 0 s turTru2.JH486691 18920 9 - 63237 attct---cttc---- i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438221 9 + 221441202 TTTCT---ctac---- i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514662 9 + 51628933 TTTCT---CTAC---- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071540 9 - 2169676 TTTCT---CTAC---- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879147 9 + 84719076 tgcct---cttc---- i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 55195 29 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=-4354.000000 s mm10.chr1_GL456221_random 135707 9 + 206961 TTTTGACCA s rn5.chr9 92379935 9 + 121549591 CTTTGCCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166788 9 - 10418462 ctttgactg i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153084 4 + 243199373 tctt----- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235637840 9 + 247518478 TTTTTAAAA i panTro4.chr2B C 0 I 11 s gorGor3.chr2B 119588508 9 + 131632457 tttttaaaa i gorGor3.chr2B C 0 I 11 s ponAbe2.chr2b 122710986 9 + 135000294 tttttaaaa i ponAbe2.chr2b C 0 I 8 s rheMac3.chr12 94180213 6 + 106825570 ttttCA--- i rheMac3.chr12 C 0 I 9 s papHam1.scaffold13267 55224 6 + 66950 ttttCA--- i papHam1.scaffold13267 I 29 I 238 s micMur1.scaffold_3075 124485 9 + 176633 CTTTGActg i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840245 9 - 32117204 CCTtgactg i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 18929 8 - 63237 ttctgact- i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438230 8 + 221441202 ttttgact- i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514671 8 + 51628933 TTTTGATT- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071549 8 - 2169676 TTTCAATT- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879156 8 + 84719076 tcttgact- i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=268892.000000 s mm10.chr1_GL456221_random 135716 72 + 206961 AAATGGACTTGGACAAGTCCTTT---GT-CTCTCACCTCAGACTC---ATTTCTAACGTTAAGAGGGTCATGTACATCA s rn5.chr9 92379944 74 + 121549591 CAATGGACTTGGACAAGTGCCTT---GT-CTTTCACCTCAAATTCTTTACTTCTAATG-TAAGAGGGTCATCTATGCCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166797 76 - 10418462 tga-gcacttgggcctaacacttgacgt-cttttgcctcagttttctcatctgttaat-tgaaaggggaaattgggcca i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153089 77 + 243199373 gtgtgggcttaggctgatcatttgactt-tctttgtctcagttttctcatctggaaag-caagagcatgaattagGCCA i hg19.chr2 I 1 C 0 s panTro4.chr2B 235637860 77 + 247518478 gtgtgatcttgtgctgaccacttggcct-tctttgccttggtttcctcatctgagaag-ctagagggtgaattagGCCA i panTro4.chr2B I 11 C 0 s gorGor3.chr2B 119588528 77 + 131632457 gtgtgatcttgtgctgaccacttggcct-tctttgccttggtttcctcatctgagaag-ctagagggtgaattagGCCA i gorGor3.chr2B I 11 C 0 s ponAbe2.chr2b 122711003 77 + 135000294 gtgtgatgttgtgctgaccacttggcct-tctttgccttggtttcctcatctgagaag-ctagagggtgaattagGCCA i ponAbe2.chr2b I 8 C 0 s rheMac3.chr12 94180228 77 + 106825570 gtgtggtcttgtgctgaccacttgacct-tctttgccttggtttcctcatctgggaag-ctagagggtgaattagGCCA i rheMac3.chr12 I 9 C 0 s micMur1.scaffold_3075 124494 77 + 176633 -tgtgggcttgggcttatcacttgacctctttttgcctcagtctcctcatctggaaag-caagagggtgaattagGCCA i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840254 69 - 32117204 -tg-------ggccttatcacttgacct-gttctgcctcagtctccttatctggaaag-caagagggtgaattaggcca i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 18937 77 - 63237 gtgtgggcttggacctgtcacttgacag-cttttgcttcaatttcttcatctgtaaag-caagagagtgaattagGCCC i turTru2.JH486691 C 0 I 6 s felCat5.chrC1 212438238 77 + 221441202 gtgtgggcttgggcctgtcatttgactt-cttttgcctcaatttcttcatctgtaaag-caagagagtgaattaggcca i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514679 53 + 51628933 GTGTGGGCTTGAGCCTGTCACTTGGTCA-C------------------------AGAG-CAAGAGAGCAAATTAAGCCA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071557 53 - 2169676 GTGTGGGCTTCGACCTGTCACTTGATCA-C------------------------AAAG-CAAGAGAGCAAATTAAGCTA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879164 75 + 84719076 gtgtgggcttaggcatgtcacttggcca-c--ttttacgtgtatcctcaactgtgaag-caagagagtgaattaagcta i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 8053 1227 + 11994 I e papHam1.scaffold13267 55230 238 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=10296.000000 s mm10.chr1_GL456221_random 135788 2 + 206961 AC s rn5.chr9 92380018 2 + 121549591 AC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166873 2 - 10418462 gc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231153166 2 + 243199373 AC i hg19.chr2 C 0 I 974 s panTro4.chr2B 235637937 2 + 247518478 AC i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 119588605 2 + 131632457 AC i gorGor3.chr2B C 0 I 7 s ponAbe2.chr2b 122711080 2 + 135000294 AC i ponAbe2.chr2b C 0 I 7 s rheMac3.chr12 94180305 2 + 106825570 AC i rheMac3.chr12 C 0 I 7 s micMur1.scaffold_3075 124571 2 + 176633 AC i micMur1.scaffold_3075 C 0 I 4 s otoGar3.GL873532 28840323 2 - 32117204 ac i otoGar3.GL873532 C 0 I 4 s vicPac1.scaffold_13731 9280 2 + 11994 at i vicPac1.scaffold_13731 I 1227 C 0 s turTru2.JH486691 19020 1 - 63237 -T i turTru2.JH486691 I 6 C 0 s felCat5.chrC1 212438315 2 + 221441202 ac i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514732 2 + 51628933 AT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071610 2 - 2169676 CT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879239 2 + 84719076 ac i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e calJac3.chr6 146854107 4178 + 158406734 I e papHam1.scaffold13267 55230 238 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=3600.000000 s mm10.chr1_GL456221_random 135790 1 + 206961 C s rn5.chr9 92380020 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166875 1 - 10418462 c i speTri2.JH393335 C 0 I 2 s vicPac1.scaffold_13731 9282 1 + 11994 c i vicPac1.scaffold_13731 C 0 I 266 s turTru2.JH486691 19021 1 - 63237 C i turTru2.JH486691 C 0 I 1 s felCat5.chrC1 212438317 1 + 221441202 c i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514734 1 + 51628933 C i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1071612 1 - 2169676 C i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17879241 1 + 84719076 c i equCab2.chr6 C 0 I 4 e saiBol1.JH378144 7787 3467 + 18451090 I e ponAbe2.chr2b 122711082 7 + 135000294 I e otoGar3.GL873532 28840325 4 - 32117204 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94180307 7 + 106825570 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e gorGor3.chr2B 119588607 7 + 131632457 I e panTro4.chr2B 235637939 7 + 247518478 I e hg19.chr2 231153168 974 + 243199373 I e calJac3.chr6 146854107 4178 + 158406734 I e papHam1.scaffold13267 55230 238 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 124573 4 + 176633 I a score=86379.000000 s mm10.chr1_GL456221_random 135791 26 + 206961 CCTT--CAGTCCATTGCAGGCTTGA---------------TCA s rn5.chr9 92380021 23 + 121549591 C-----AAGTCCATTGCAGTCTTGA---------------TCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166878 43 - 10418462 ccttcacagaaccttccagtcctgaTTGGACATCTACCTGTCC i speTri2.JH393335 I 2 C 0 s hg19.chr2 231154142 27 + 243199373 -CTTATTAGTCCATCCTGGTCCTAA---------------TAG i hg19.chr2 I 974 I 11 s panTro4.chr2B 235637946 27 + 247518478 -CTTATTAGTCCATCCCAGTCTAAA---------------TAG i panTro4.chr2B I 7 I 11 s gorGor3.chr2B 119588614 27 + 131632457 -CTTATTAGTCCATCCCAGTCTAAA---------------TAG i gorGor3.chr2B I 7 I 11 s ponAbe2.chr2b 122711089 27 + 135000294 -CTTGTTAGTCCATCCCAGTCTAAA---------------TAG i ponAbe2.chr2b I 7 I 11 s rheMac3.chr12 94180314 27 + 106825570 -CTTATTAGTCCATCTCAGTCTAAA---------------TAG i rheMac3.chr12 I 7 I 11 s micMur1.scaffold_3075 124577 27 + 176633 -CTTCTCAGTCTATCCTCGTCCTAG---------------CAG i micMur1.scaffold_3075 I 4 I 11 s otoGar3.GL873532 28840329 27 - 32117204 -tttctctgtccatcctactcctaa---------------cag i otoGar3.GL873532 I 4 I 11 s turTru2.JH486691 19023 26 - 63237 --TTCTCAGTTCATCCCAGTTCTAC---------------TAG i turTru2.JH486691 I 1 C 0 s felCat5.chrC1 212438318 26 + 221441202 --ctctcagttcattgcagttctga---------------tag i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514736 26 + 51628933 --TTCTCAGTCCATCACAGTTCTGA---------------TGG i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1071614 26 - 2169676 --TTCTCAGTCCATCACAGTTCTGA---------------TAG i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17879246 26 + 84719076 --ttctcagtccatcctagttctaa---------------tag i equCab2.chr6 I 4 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e nomLeu2.GL397366 3755962 2409 + 6458163 I e calJac3.chr6 146854107 4178 + 158406734 I e vicPac1.scaffold_13731 9283 266 + 11994 I e papHam1.scaffold13267 55230 238 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=82486.000000 s mm10.chr1_GL456221_random 135817 56 + 206961 -----------CAAACTTAGTCTCAGCACCATGGACAGT-TCACTGCAGGCTCCCTCCCAGT--------------------------CCCACT--- s rn5.chr9 92380044 80 + 121549591 -----------C--ACTTAGTCTCAGCACCATGGACAGT-CCACTGccccccccgccccctcccctccccccacctccctacctcccgcccact--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166921 37 - 10418462 -----------CAGATTCAGTCCTAGGACCAAACACAGC-TCC---------------------------------------------CTCCCT--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154180 34 + 243199373 -----------AAAAATTTGTCTCAGGACCAAGGACAGC-------------------------------------------------TCCCCC--- i hg19.chr2 I 11 I 2 s panTro4.chr2B 235637984 35 + 247518478 -----------CAAAACCAGTCTCAGGACCAAGGACCGC-T-----------------------------------------------TCCCCT--- i panTro4.chr2B I 11 I 2 s gorGor3.chr2B 119588652 35 + 131632457 -----------CAAAACCAGTCTCAGGACCAAGGACCGC-T-----------------------------------------------TCCCCT--- i gorGor3.chr2B I 11 I 2 s ponAbe2.chr2b 122711127 35 + 135000294 -----------CAAAACCAGTCTCAGGACCAAGGACTTC-T-----------------------------------------------TCCCCT--- i ponAbe2.chr2b I 11 I 2 s nomLeu2.GL397366 3758371 35 + 6458163 -----------CAAAACCAGTCTCAGGACCAAGGACCGC-T-----------------------------------------------TCCCCT--- i nomLeu2.GL397366 I 2409 I 2 s rheMac3.chr12 94180352 35 + 106825570 -----------CAAAACCAGTCTCAGGACCAAGGGCCGC-T-----------------------------------------------CCCCCT--- i rheMac3.chr12 I 11 I 2 s calJac3.chr6 146858285 35 + 158406734 -----------CAAAACCAGTCTCAGGATCAAAAACAGC-T-----------------------------------------------CCTGCT--- i calJac3.chr6 I 4178 I 2 s micMur1.scaffold_3075 124615 35 + 176633 -----------CAAAGTCAGTCTCAGGACAAAGGACAGT-T-----------------------------------------------CTCCTC--- i micMur1.scaffold_3075 I 11 I 1 s otoGar3.GL873532 28840367 35 - 32117204 -----------CAAAATTAGTGTCAGGATGAAGGACAGC-T-----------------------------------------------CCCCTT--- i otoGar3.GL873532 I 11 I 1 s turTru2.JH486691 19049 42 - 63237 CCTA-CTACCTCAAAACT-------GGACCATGGACAGCTC-----------------------------------------------CCCCTCTTC i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438344 42 + 221441202 tctaCCTGGCTCAAAACT-------GGACCATGGACAGG-C-----------------------------------------------CGCCACCTC i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514762 42 + 51628933 TCTACCCGGTTCAACACT-------GGACCATGGATAGC-T-----------------------------------------------CCCCTCCTC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071640 40 - 2169676 TCTACCCGGCTCAATACT-------GGACCATGGACA---C-----------------------------------------------TCCCTCCTA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879272 49 + 84719076 tctGCCTAACTCAAAACTGGTCTCAGGACCACGGACAGC-T-----------------------------------------------CCCCCTCTC i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 7787 3467 + 18451090 I e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9283 266 + 11994 I e papHam1.scaffold13267 55230 238 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=70418.000000 s mm10.chr1_GL456221_random 135873 10 + 206961 CCATCAAAGT s rn5.chr9 92380124 10 + 121549591 ccATCAAAGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166958 10 - 10418462 CCATCATGGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154216 10 + 243199373 TTATCATGAC i hg19.chr2 I 2 C 0 s panTro4.chr2B 235638021 10 + 247518478 CCATCATGGC i panTro4.chr2B I 2 N 0 s gorGor3.chr2B 119588689 10 + 131632457 CCATCATGGC i gorGor3.chr2B I 2 T 99478 s ponAbe2.chr2b 122711164 10 + 135000294 CCATCATGGC i ponAbe2.chr2b I 2 I 1 s nomLeu2.GL397366 3758408 10 + 6458163 CCATCATGGC i nomLeu2.GL397366 I 2 T 85262 s rheMac3.chr12 94180389 10 + 106825570 CCGTCATGGC i rheMac3.chr12 I 2 T 98488 s calJac3.chr6 146858322 10 + 158406734 CCATCATGGC i calJac3.chr6 I 2 T 96357 s saiBol1.JH378144 11254 10 + 18451090 CCATCATGGC i saiBol1.JH378144 I 3467 C 0 s micMur1.scaffold_3075 124651 10 + 176633 CCATCATGGC i micMur1.scaffold_3075 I 1 C 0 s otoGar3.GL873532 28840403 10 - 32117204 TGATCTTGGC i otoGar3.GL873532 I 1 C 0 s turTru2.JH486691 19091 9 - 63237 CCATCATAG- i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438386 9 + 221441202 CCATCTTGG- i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514804 9 + 51628933 CCATCATGG- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071680 9 - 2169676 CCATCACGG- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879321 9 + 84719076 CCATCCTGG- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9283 266 + 11994 I e papHam1.scaffold13267 55230 238 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=-21845.000000 s mm10.chr1_GL456221_random 135883 2 + 206961 CT- s rn5.chr9 92380134 2 + 121549591 CT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166968 2 - 10418462 GT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154226 1 + 243199373 -T- i hg19.chr2 C 0 I 262 s panTro4.chr2B 235532522 1 + 247518478 -c- i panTro4.chr2B N 0 I 1 s gorGor3.chr2B 119489221 1 + 131632457 -c- i gorGor3.chr2B T 99478 I 1 s ponAbe2.chr2b 122711175 1 + 135000294 -T- i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3673156 1 + 6458163 -c- i nomLeu2.GL397366 T 85262 I 1 s rheMac3.chr12 94081911 1 + 106825570 -c- i rheMac3.chr12 T 98488 I 1 s calJac3.chr6 146761975 1 + 158406734 -c- i calJac3.chr6 T 96357 I 1 s saiBol1.JH378144 11264 1 + 18451090 -C- i saiBol1.JH378144 C 0 I 1 s micMur1.scaffold_3075 124661 1 + 176633 -C- i micMur1.scaffold_3075 C 0 I 1 s otoGar3.GL873532 28840413 1 - 32117204 -C- i otoGar3.GL873532 C 0 I 1 s turTru2.JH486691 19100 2 - 63237 -CT i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438395 2 + 221441202 -CT i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514813 2 + 51628933 -CT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071689 2 - 2169676 -CT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879330 2 + 84719076 -CT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9283 266 + 11994 I e papHam1.scaffold13267 55230 238 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=169926.000000 s mm10.chr1_GL456221_random 135885 42 + 206961 CTGCACTGATGGCAGGGAGAGCAAACTTATCTTCTCTTCC-------------TT--- s rn5.chr9 92380136 37 + 121549591 CTGCCTTGATAACAGGGAGAA-AAACTTATTGACTTTT-------------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4166970 53 - 10418462 CTGCCACATTGGTCAGAAGCT-AGA-TTAGCTCTTCATCCGCCCGGAATTTGTTT--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154489 42 + 243199373 CTACACCTTTGGTTGGAAGGGAAGGATTCACTGCTCACCCTC---------------- i hg19.chr2 I 262 I 13 s panTro4.chr2B 235532524 42 + 247518478 CTACACCTTTGGTTGGAAGGGAAGGATTCACTGCTCACCCTC---------------- i panTro4.chr2B I 1 I 13 s gorGor3.chr2B 119489223 42 + 131632457 CTACACCTTTGGTTGGAAGGGAAGGATTCACTGCTCACCCTC---------------- i gorGor3.chr2B I 1 I 13 s ponAbe2.chr2b 122711176 42 + 135000294 GTACACTTCTGTTTGGAAGGGCAGGATTAGCTGCTCATCCTC---------------- i ponAbe2.chr2b C 0 I 15 s nomLeu2.GL397366 3673158 42 + 6458163 CTACACCTTTGGTTGGAAGGGAAGGATTCACTGCTCACCCTC---------------- i nomLeu2.GL397366 I 1 I 13 s rheMac3.chr12 94081913 42 + 106825570 CTACACCTTTGGTTGGAAGGGAAGGATTCACTGCTCACCCTC---------------- i rheMac3.chr12 I 1 I 13 s calJac3.chr6 146761977 42 + 158406734 CTACATCTTTGGTTGGAAGGGCAGGATTTGCTGCTCATCCTC---------------- i calJac3.chr6 I 1 I 13 s saiBol1.JH378144 11266 42 + 18451090 CTCCACCTCTGTTTGGAAAGGCAGGATTCACTGCTCATCCTC---------------- i saiBol1.JH378144 I 1 I 13 s micMur1.scaffold_3075 124663 42 + 176633 CTACGACTTTGGCTGGAAGGGTGGGATTAGCGGCTCACCCTC---------------- i micMur1.scaffold_3075 I 1 I 13 s otoGar3.GL873532 28840415 42 - 32117204 CTACAATTGTGATTAGAAGGGCAGAATTACCTGCTCATCCTC---------------- i otoGar3.GL873532 I 1 I 13 s turTru2.JH486691 19102 45 - 63237 CTAAAACGTTGGCTGGAGGGTCAGCATCAGTTACACATCCTC-------------CTT i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438397 45 + 221441202 CTAAAACATTGCCTGGAAGGACAGCATCAGCTACACATCCTC-------------CTT i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514815 45 + 51628933 CTAAAATCTCAGCTGGAAGGGTGGCATCAGCTATACAATCTC-------------CTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071691 45 - 2169676 CTAAAACGTCAGCTGGAAGGGCAGCATCAGCTATATATGCTC-------------CTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879332 45 + 84719076 CTGAAACGTCTGCTGAAAGGGCAGCATCAGCTACAGATCCTC-------------CTT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9283 266 + 11994 I e papHam1.scaffold13267 55230 238 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=77191.000000 s mm10.chr1_GL456221_random 135927 14 + 206961 --------------GAGGTATTTTCA-TC s rn5.chr9 92380173 12 + 121549591 ----------------AGGAATTTCA-TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167023 14 - 10418462 --------------CAAGACTTTTCA-CC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154544 14 + 243199373 --------------GAAGACCTTTCA-CC i hg19.chr2 I 13 C 0 s panTro4.chr2B 235532579 14 + 247518478 --------------GAAGACCTTTCA-CC i panTro4.chr2B I 13 C 0 s gorGor3.chr2B 119489278 14 + 131632457 --------------GAAGACCTTTCA-CC i gorGor3.chr2B I 13 C 0 s ponAbe2.chr2b 122711233 14 + 135000294 --------------GAAAAACTTTCA-CA i ponAbe2.chr2b I 15 C 0 s nomLeu2.GL397366 3673213 14 + 6458163 --------------GAAGACCTTTCA-CC i nomLeu2.GL397366 I 13 C 0 s rheMac3.chr12 94081968 14 + 106825570 --------------GAAGACCTTACA-CC i rheMac3.chr12 I 13 C 0 s papHam1.scaffold13267 55468 14 + 66950 --------------GAAAAACTTTCC-CA i papHam1.scaffold13267 I 238 I 922 s calJac3.chr6 146762032 15 + 158406734 --------------GAAGAACTTTCACCC i calJac3.chr6 I 13 C 0 s saiBol1.JH378144 11321 14 + 18451090 --------------GAAGAACTTTCA-CA i saiBol1.JH378144 I 13 C 0 s micMur1.scaffold_3075 124718 14 + 176633 --------------GAAGACCATTCA-TC i micMur1.scaffold_3075 I 13 C 0 s otoGar3.GL873532 28840470 14 - 32117204 --------------GAAGACTACTCA-TC i otoGar3.GL873532 I 13 C 0 s turTru2.JH486691 19147 24 - 63237 G----AGCTAGTTTGAAGACCTTTCA-CC i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438442 28 + 221441202 GAGTTAGTTCATTTGAAGACTTTTCA-CC i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42514860 24 + 51628933 G----AGTTCATTTAAAGACCTTTCA-TC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071736 28 - 2169676 GAGTTAGTTCATTTGAAGACTTTTCC-TC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879377 27 + 84719076 GAATTAGTTCATTTGAAGACCTAT-A-CC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9283 266 + 11994 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=152160.000000 s mm10.chr1_GL456221_random 135941 40 + 206961 TCT----------------------ACTTCTGTGGAGTTG-------------CATCTC------TCCAC---------CT--CCT-----GTATTG s rn5.chr9 92380185 40 + 121549591 TCT----------------------ACTTCTGTGGCGTTG-------------CATCTC------TCCAC---------CT--CCT-----GTATTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167037 44 - 10418462 CCC----------------------ACTTCTGTGGAGTCA-------------GGTCTCCA--TTTCCCT---------CC--CCT-----CTATAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154558 51 + 243199373 CCC----------------------TTCTCTGTGAAATCA-------------GGTCTCCAGTCCCCCAC---------CT--GCAACCCCATATAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532593 51 + 247518478 CCC----------------------TTCTCTGTGAAATCA-------------GGTCTCCAGTCCCCCAC---------CT--GCAACCCCATATAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489292 51 + 131632457 CCC----------------------TTCTCTGTGAAATCA-------------GGTCTCCAGTCCCCCAC---------CT--GCAACCCCGTATAA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711247 51 + 135000294 CCT----------------------ACTTCTGTAGTATCA-------------GGTTCTCAGTTCCCCAC---------CC--CCTGCTTGGTACAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673227 51 + 6458163 CCC----------------------TTCTCTGTGAAATCA-------------GATCTCCAGTCCCCCAT---------CT--GCCACCCCATATAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94081982 51 + 106825570 CCC----------------------TTCTCTGTGAAATCA-------------GGTCTCCAGTCCCCCAC---------CT--GCCACCCCATATAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762047 51 + 158406734 CCT----------------------ACTTCTGTGAAATCA-------------AGTCTCCAGTTCTCCAT---------CT--GCCACCCTGTATAA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11335 51 + 18451090 CCT----------------------ACTTCTGTGATATCA-------------GGTCCCTAGTTTCCCAC---------CC--ACTGCCAGGTACAA i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 124732 71 + 176633 ACTTCCATTCCTTTGAAGACCATTCATCACTGTGAAATCA-------------GGTCTCCAACCCTTGCT---------CT--CCCACC--GTATAA i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840484 58 - 32117204 ACT----------------------ACCACTGTGAAGTCA-------------GGTCTCCAACCCTTACTGCCTTCCACCC--TCTACT--GCATAA i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 19171 44 - 63237 CCT----------------------GCTGCTGTGGAATCA-------------GGTCTCTAGCAGCCCTC---------CCCACC------ATG--- i turTru2.JH486691 C 0 I 3 s felCat5.chrC1 212438470 42 + 221441202 CCT----------------------GATTTTGTGGAGTCA-------------GGTCTCCAGCTGCCTTT---------CC--TC------ATG--- i felCat5.chrC1 C 0 I 3 s canFam3.chr25 42514884 55 + 51628933 CCT----------------------ACTTCTGTGGAGTCATCCCTACTTCTGTGGAGTCCAGCTACCTCT---------CC--TC------ATA--- i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1071764 42 - 2169676 CCT----------------------ACTTCTTTGGAGTCA-------------GGTCTCCAGCCGCCTCT---------CT--TC------ATG--- i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17879404 43 + 84719076 CCT----------------------ACTTCTTTGGAATCA-------------GGTCTCCAGCCTCCCTC---------CC--TCT-----ATG--- i equCab2.chr6 C 0 I 3 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9283 266 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=500801.000000 s mm10.chr1_GL456221_random 135981 56 + 206961 TTTTCAGATTGTTCTAGAGCT-ATCTGGGCTTTTCTATTAGC-----------------------------ACAAA-----------------------TCACTCTTGT s rn5.chr9 92380225 108 + 121549591 TTTTCAGATTGTTCTAGAACT-CTCTGGGTTTCTCTATCAGCTGCAGACAGAAAACCAAAAAAACCAAaaaacaaaacaaaacaaaacaaaaaaaaacCCCACTGTTGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167081 49 - 10418462 TTTTCCAATCATTCTAGAACT-CCCTGAGCTCCTTCCTAACCT----------------------------ATAGA-------------------------------GA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154609 59 + 243199373 TTTTCAGATTATTCTAGAGCT-CCCTGAGCTCTTCTCTTAGCTACGG------------------------GGAAA-------------------------GCAGACAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532644 59 + 247518478 TTTTCAGATTATTCTAGAGCT-CCCTGAGCTCTTCTCTTAGCTATGG------------------------GGAAA-------------------------GCAGACAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489343 59 + 131632457 TTTTCAGATTATTCTAGAGCT-CCCTGAGCTCTTCTCTTAGCTATGG------------------------GGAAA-------------------------GCAGACAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711298 59 + 135000294 TTTTCAGATTATTCTAGAGCT-CCCTGAGCTCCTTTCTCAGCTGTGG------------------------AGAAA-------------------------GCTGATAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673278 59 + 6458163 TTTTCAGATTATTCTAGAGCT-CCCTGAGCTCTTCTCTTAGCTATGG------------------------GGAAA-------------------------GCAGACAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082033 59 + 106825570 TTTTCAGATTTTTCTAGAGCT-CCCTGAGCTCTTCTCTCAGCTACAA------------------------GGAAA-------------------------GCTGACAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762098 59 + 158406734 TTTTCAGATTATTCTAGAGCT-CCCTGAGCTCTTCTCTCAGCTATGG------------------------GGGAA-------------------------GCTGACAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11386 59 + 18451090 TTTTCATATTATTCTAGAGCT-CCCTGAGCTCCTCTCTCAGCAGTGA------------------------ACAAA-------------------------GTTGATAG i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 124803 60 + 176633 TCTTCAGATTATTCTAGAGCTCCCCTGAGCTCCTCTCTCAGCCGCAA------------------------AGAAA-------------------------GCAGACAC i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840542 56 - 32117204 TCTTCAAATTATTCTAGAACT-CCCTGAG---CTCTCTTGGGTGCAG------------------------AGAAA-------------------------GCTGACAT i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 19218 59 - 63237 CTTGCAGATTATCCTAGAGCT-TCCTGAACTCCTCTTTCAGCTAAGG------------------------AGAAA-------------------------GCCAATGT i turTru2.JH486691 I 3 C 0 s felCat5.chrC1 212438515 59 + 221441202 TGTGCAGATTATTCTAGAGTT-TCCTGAGCTCCTCTTTTAGCTATGG------------------------AGAAA-------------------------GCTGATGT i felCat5.chrC1 I 3 C 0 s canFam3.chr25 42514940 54 + 51628933 -----AGATTATTTTAGAGTT-CCCTGAGCTCCTCTTTTAGCTATGG------------------------AGAAA-------------------------GTTGATGT i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1071809 59 - 2169676 TGTGAAGATTATTCTAGAGTT-CCCTGAGCTCCTCCTTTAGCTATGG------------------------AGAAA-------------------------GCTGAGGT i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17879450 59 + 84719076 TTTGTAGATTATTCTAGAGCT-TCCTGAGCTCCTCTTTCAGCTATGG------------------------AGAAA-------------------------GCTGAGGT i equCab2.chr6 I 3 C 0 s myoLuc2.GL429770 26312020 59 + 30916457 TTTGCAGATTGTTCTTGCGCT-TCCTCAGCTCCTCTTTCAGCTTTGG------------------------AGAAA-------------------------GTTGATGT i myoLuc2.GL429770 N 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9283 266 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=-33182.000000 s mm10.chr1_GL456221_random 136037 3 + 206961 -CAG s rn5.chr9 92380333 3 + 121549591 -GAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167130 3 - 10418462 -AAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154668 3 + 243199373 -GAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532703 3 + 247518478 -GAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489402 3 + 131632457 -GAC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711357 3 + 135000294 -GAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673337 3 + 6458163 -GAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082092 3 + 106825570 -GAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762157 3 + 158406734 -AAA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11445 3 + 18451090 -AAG i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 124863 3 + 176633 -AAG i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840598 3 - 32117204 -GAA i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 9549 2 + 11994 TA-- i vicPac1.scaffold_13731 I 266 I 14 s turTru2.JH486691 19277 1 - 63237 -G-- i turTru2.JH486691 C 0 I 2 s felCat5.chrC1 212438574 1 + 221441202 -G-- i felCat5.chrC1 C 0 I 2 s canFam3.chr25 42514994 1 + 51628933 -G-- i canFam3.chr25 C 0 I 6 s ailMel1.GL192536.1 1071868 1 - 2169676 -G-- i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17879509 1 + 84719076 -G-- i equCab2.chr6 C 0 I 2 s myoLuc2.GL429770 26312079 1 + 30916457 -G-- i myoLuc2.GL429770 C 0 I 2 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e papHam1.scaffold13267 55482 922 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=99610.000000 s mm10.chr1_GL456221_random 136040 13 + 206961 GGAGAAAT------AAAGC s rn5.chr9 92380336 13 + 121549591 GGAGAAAT------TAAAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167133 19 - 10418462 GGGAAAATGAAGTCTAAGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154671 13 + 243199373 AGAGAAAT------GAACT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532706 13 + 247518478 AGAGAAAT------GAGCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489405 13 + 131632457 AGAGAAAT------GAACT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711360 13 + 135000294 GGGAAAAT------GGAGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673340 13 + 6458163 GGAGAAAT------GAACT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082095 13 + 106825570 GGAGAAAT------GAACT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762160 11 + 158406734 GGAGAAGT------GAA-- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11448 13 + 18451090 GGAAAAAT------GGAGC i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 124866 13 + 176633 GGAGAAAT------GAAGC i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840601 12 - 32117204 GGA-AAAT------GAGGC i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 19280 13 - 63237 GGAGAAGT------GAAGC i turTru2.JH486691 I 2 C 0 s felCat5.chrC1 212438577 13 + 221441202 AGAGAAAT------GAAGC i felCat5.chrC1 I 2 C 0 s canFam3.chr25 42515001 13 + 51628933 GGGGATAT------GAAGC i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1071871 13 - 2169676 GGAGAAAT------GAAGC i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17879512 13 + 84719076 GGAGAGAT------AAAGC i equCab2.chr6 I 2 C 0 s myoLuc2.GL429770 26312082 13 + 30916457 GGACAAAT------GAGGC i myoLuc2.GL429770 I 2 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9551 14 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=13224.000000 s mm10.chr1_GL456221_random 136053 1 + 206961 A s rn5.chr9 92380349 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167152 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154684 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532719 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489418 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711373 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673353 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082108 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762171 1 + 158406734 A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11461 1 + 18451090 A i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 124879 1 + 176633 A i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840613 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 9565 1 + 11994 A i vicPac1.scaffold_13731 I 14 C 0 s turTru2.JH486691 19293 1 - 63237 A i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438590 1 + 221441202 A i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42515014 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071884 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879525 1 + 84719076 A i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26312095 1 + 30916457 A i myoLuc2.GL429770 C 0 C 0 e pteVam1.scaffold_9232 40344 1747 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e papHam1.scaffold13267 55482 922 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=12549.000000 s mm10.chr1_GL456221_random 136054 1 + 206961 G s rn5.chr9 92380350 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167153 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154685 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532720 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489419 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711374 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673354 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082109 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762172 1 + 158406734 A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11462 1 + 18451090 A i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 124880 1 + 176633 A i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840614 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 9566 1 + 11994 A i vicPac1.scaffold_13731 C 0 I 516 s turTru2.JH486691 19294 1 - 63237 A i turTru2.JH486691 C 0 C 0 s felCat5.chrC1 212438591 1 + 221441202 A i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42515015 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1071885 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879526 1 + 84719076 A i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26312096 1 + 30916457 A i myoLuc2.GL429770 C 0 C 0 s pteVam1.scaffold_9232 42091 1 + 60856 G i pteVam1.scaffold_9232 I 1747 C 0 e oviAri1.chr2 244338562 0 + 263237078 I e papHam1.scaffold13267 55482 922 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=35444.000000 s mm10.chr1_GL456221_random 136055 3 + 206961 GGC s rn5.chr9 92380351 3 + 121549591 AGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167154 3 - 10418462 AGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154686 3 + 243199373 AGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532721 3 + 247518478 AGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489420 3 + 131632457 AGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711375 3 + 135000294 AGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673355 3 + 6458163 AGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082110 3 + 106825570 AGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762173 3 + 158406734 AGC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11463 3 + 18451090 GGC i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 124881 3 + 176633 AGC i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840615 3 - 32117204 AGT i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 19295 3 - 63237 AGC i turTru2.JH486691 C 0 I 3 s felCat5.chrC1 212438592 3 + 221441202 AGC i felCat5.chrC1 C 0 I 3 s canFam3.chr25 42515016 3 + 51628933 AGC i canFam3.chr25 C 0 I 3 s ailMel1.GL192536.1 1071886 3 - 2169676 AGC i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17879527 3 + 84719076 AGC i equCab2.chr6 C 0 I 3 s myoLuc2.GL429770 26312097 3 + 30916457 AGT i myoLuc2.GL429770 C 0 I 3 s pteVam1.scaffold_9232 42092 3 + 60856 AGA i pteVam1.scaffold_9232 C 0 I 3492 e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=44024.000000 s mm10.chr1_GL456221_random 136058 11 + 206961 AG---ACATACATA s rn5.chr9 92380354 11 + 121549591 AG---ACATAAAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167157 11 - 10418462 AG---AGAACAATA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154689 14 + 243199373 AGAGAACAAAAATA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532724 14 + 247518478 AGAGAACAAAAATA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489423 14 + 131632457 AGAGAACAAAAATA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711378 13 + 135000294 AGAG-ATAAAAGTA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673358 14 + 6458163 AGAGAACAAAAATA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082113 14 + 106825570 AGAGAACAAAAATA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762176 14 + 158406734 AGAGAACAAAAATA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11466 14 + 18451090 AGAGAACAACAATA i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 124884 13 + 176633 AGAG-ACAAAAATA i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840618 13 - 32117204 GGAG-GCAGACTTA i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 19301 11 - 63237 ---GAACACAAAGA i turTru2.JH486691 I 3 I 1 s felCat5.chrC1 212438598 11 + 221441202 ---GAACAAGACTA i felCat5.chrC1 I 3 I 1 s canFam3.chr25 42515022 8 + 51628933 ---G---AAGAATA i canFam3.chr25 I 3 I 1 s ailMel1.GL192536.1 1071892 11 - 2169676 ---GAACAAGAATA i ailMel1.GL192536.1 I 3 I 1 s equCab2.chr6 17879533 9 + 84719076 ---CAACA--AACG i equCab2.chr6 I 3 I 1 s myoLuc2.GL429770 26312103 11 + 30916457 ---GAACATGAATA i myoLuc2.GL429770 I 3 I 1 e pteVam1.scaffold_9232 42095 3492 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=2840.000000 s mm10.chr1_GL456221_random 136069 1 + 206961 T s rn5.chr9 92380365 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167168 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154703 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532738 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489437 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711391 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673372 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082127 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762190 1 + 158406734 G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11480 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 124897 1 + 176633 G i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28840631 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42515030 1 + 51628933 I e ailMel1.GL192536.1 1071903 1 - 2169676 I e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312114 1 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19312 1 - 63237 I e equCab2.chr6 17879542 1 + 84719076 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438609 1 + 221441202 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=158744.000000 s mm10.chr1_GL456221_random 136070 19 + 206961 AAATTCGAATTGAT--CCACC s rn5.chr9 92380366 20 + 121549591 AAATTTGAAATGATC-CCACC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167169 21 - 10418462 GAAGCAGACCCCGTCTCCATC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154704 19 + 243199373 AAGGCAGACATCATCTCCA-- i hg19.chr2 C 0 I 11 s panTro4.chr2B 235532739 19 + 247518478 AAGGCAGACATCATCTCCA-- i panTro4.chr2B C 0 I 11 s gorGor3.chr2B 119489438 19 + 131632457 AAGGCAGACATCATCTCCA-- i gorGor3.chr2B C 0 I 11 s ponAbe2.chr2b 122711392 19 + 135000294 AAGGCAGGCACCGTCTCCA-- i ponAbe2.chr2b C 0 I 11 s nomLeu2.GL397366 3673373 19 + 6458163 AAGGCAGACATAATTTCCA-- i nomLeu2.GL397366 C 0 I 11 s rheMac3.chr12 94082128 19 + 106825570 AAGGCAGACATCATCTCCA-- i rheMac3.chr12 C 0 I 11 s calJac3.chr6 146762191 19 + 158406734 AAGGCAGACATCATCTCCA-- i calJac3.chr6 C 0 I 11 s saiBol1.JH378144 11481 19 + 18451090 AAGGCAGACACTGTCTCCA-- i saiBol1.JH378144 C 0 I 11 s micMur1.scaffold_3075 124898 19 + 176633 AAGGCAGACACCATCTCCG-- i micMur1.scaffold_3075 C 0 I 328 s otoGar3.GL873532 28840632 19 - 32117204 AAAGCAGACACCGTTTCCA-- i otoGar3.GL873532 C 0 I 11 s turTru2.JH486691 19313 19 - 63237 AAGACAGACGTCACCTCCA-- i turTru2.JH486691 I 1 C 0 s felCat5.chrC1 212438610 19 + 221441202 AAGGCAGACGTCATCTCCA-- i felCat5.chrC1 I 1 C 0 s canFam3.chr25 42515031 19 + 51628933 AAGGCAGACATAATCTCCA-- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1071904 19 - 2169676 AAAGCAGACATCATCTCCA-- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17879543 19 + 84719076 AAGGCAGACACTATATCCA-- i equCab2.chr6 I 1 C 0 s myoLuc2.GL429770 26312115 19 + 30916457 CAGGTAGACACTATCTTCA-- i myoLuc2.GL429770 I 1 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=4819.000000 s mm10.chr1_GL456221_random 136089 1 + 206961 C s rn5.chr9 92380386 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167190 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154734 1 + 243199373 C i hg19.chr2 I 11 C 0 s panTro4.chr2B 235532769 1 + 247518478 C i panTro4.chr2B I 11 C 0 s gorGor3.chr2B 119489468 1 + 131632457 C i gorGor3.chr2B I 11 C 0 s ponAbe2.chr2b 122711422 1 + 135000294 C i ponAbe2.chr2b I 11 C 0 s nomLeu2.GL397366 3673403 1 + 6458163 C i nomLeu2.GL397366 I 11 C 0 s rheMac3.chr12 94082158 1 + 106825570 T i rheMac3.chr12 I 11 C 0 s calJac3.chr6 146762221 1 + 158406734 C i calJac3.chr6 I 11 C 0 s saiBol1.JH378144 11511 1 + 18451090 C i saiBol1.JH378144 I 11 C 0 s otoGar3.GL873532 28840662 1 - 32117204 C i otoGar3.GL873532 I 11 C 0 s turTru2.JH486691 19332 1 - 63237 T i turTru2.JH486691 C 0 I 2 s felCat5.chrC1 212438629 1 + 221441202 T i felCat5.chrC1 C 0 I 1043 s canFam3.chr25 42515050 1 + 51628933 T i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1071923 1 - 2169676 T i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17879562 1 + 84719076 T i equCab2.chr6 C 0 I 2 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312134 0 + 30916457 C e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 124917 328 + 176633 I a score=-8547.000000 s mm10.chr1_GL456221_random 136090 10 + 206961 --AGCTCTGCCT s rn5.chr9 92380387 8 + 121549591 --AGCGCTGC-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167191 8 - 10418462 --TCCTCCGC-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154735 8 + 243199373 --ATCATTAC-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532770 8 + 247518478 --ATCATTAC-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489469 8 + 131632457 --ATCATTAC-- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711423 8 + 135000294 --ATCATTAG-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673404 8 + 6458163 --ATCATTAC-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082159 8 + 106825570 --ATCATTAC-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762222 8 + 158406734 --ATCATTAT-- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11512 2 + 18451090 --AT-------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28840663 8 - 32117204 --ATCATTAC-- i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 19335 9 - 63237 -GGTTCCCCC-- i turTru2.JH486691 I 2 I 256 s canFam3.chr25 42515052 10 + 51628933 AGGGTACCCC-- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1071925 10 - 2169676 AGGTTACCCC-- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17879565 10 + 84719076 GGTTTACCCT-- i equCab2.chr6 I 2 C 0 s myoLuc2.GL429770 26312134 10 + 30916457 GGGTTAACTC-- i myoLuc2.GL429770 C 0 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 124917 328 + 176633 I a score=-6011.000000 s mm10.chr1_GL456221_random 136100 6 + 206961 -------ATCATC s rn5.chr9 92380395 4 + 121549591 ---------TAGG i rn5.chr9 C 0 C 0 s canFam3.chr25 42515062 10 + 51628933 ATCATTCATT--- i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1071935 10 - 2169676 ACCATTCATT--- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17879575 6 + 84719076 A----TCATT--- i equCab2.chr6 C 0 I 1 s myoLuc2.GL429770 26312144 6 + 30916457 A----TTACT--- i myoLuc2.GL429770 C 0 I 304 e saiBol1.JH378144 11514 0 + 18451090 C e ponAbe2.chr2b 122711431 0 + 135000294 C e otoGar3.GL873532 28840671 0 - 32117204 C e pteVam1.scaffold_9232 42095 3492 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4167199 0 - 10418462 C e turTru2.JH486691 19344 256 - 63237 I e rheMac3.chr12 94082167 0 + 106825570 C e nomLeu2.GL397366 3673412 0 + 6458163 C e gorGor3.chr2B 119489477 0 + 131632457 C e panTro4.chr2B 235532778 0 + 247518478 C e hg19.chr2 231154743 0 + 243199373 C e calJac3.chr6 146762230 0 + 158406734 C e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 124917 328 + 176633 I a score=1099325.000000 s mm10.chr1_GL456221_random 136106 229 + 206961 TCCTCT--------CCCTGCTCACCAAGTTAGTACTAAAATGGGGAGATAAGAGGACCATATCT------------GGCTACC-ATCTTTAGT-AAATAGCACATCTGGACAGC------TCCTGCCATAACC-CAGCAACAGCTGTATGTT------TCATGAAGCAATCAGTGGGGCTAACCAGAGTGAGTGGGAGTCAGGACAGTTTTATTGAATCCAGATTTCTCTGCTAAAGCCTTATTATTATTATCATTTTATAAAT------------- s rn5.chr9 92380399 223 + 121549591 TTGCCC--------ATTATCTCCCCAAGTCAGTGCCAAGGTGGAGAGATAAGAGGACCATCCCT-------------GCTACC-ACCTTTAGT-AAGTAGCGCATCTGGACA-C------TCCTGCCATAACC-TGACAACAGCTGTGTGTT------TCATGTAGCAGTCGATGGTGCTAACCA----GAGTGGGAGTCAGGACAGTTTTATTGAGTCCAAACTTCTCTGCTAAAGCCTTCTGTTGTTTTTTTTTTAATAAAT------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167199 231 - 10418462 -----C--------CTCTGCTTGCCTGGTCAGTGCTCGGATGGGGAAGTGGGACTACCATCCCTGGCTCTGTCTCTGGCCACC-ACCTGTGGCAAAACTGCATTGCTGGAGA--------CCTCACCAGAACAGTGACAGTAACTGTCTATTTTATGCTCATGTAAGAATCGGTGGAGCTCACTA----GATTGAGAATCATAACAGTTTTATTGGAGCCTGGTTTCTCTGCTAAAGCATT-------TCAGTTTGTGTGAAAT------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231154743 235 + 243199373 -CCTCT--------CCCTGCTTGCCCCGTCAGTGCTCAAATGGGGAGAC-TGAATATGATCTCTGGAGTCATCTAAGGCTACCCACCTGCAGCAAAACAGCATAGCTGGAGAGC------TTCTGTCAGAACAGTGACAGCAACTG--TGTTTCATTGTCATATAAGAATCAGTGGAGCTTACGA----GATTAGGAGTTAAACCAGTTTTACTGAAGTCTAATTTCTCTGCTAAAGCATT-------CTATTTTGTATGAAAT------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235532778 235 + 247518478 -CCTCT--------CCCTGCTTGCCCCGTCAGTGTTCAAATGGGGAGAC-TGAATATGATCTCTGGCTTCATCTAAGGCTGCCTACCTGCAGCAAAACAGCATAGCTGGAGAGC------TTCTGTCAGAACAGTGACAGCAACTG--TGTTTCATTGTCATATAAGAATCAGTGGAGCTTACGA----GATTAGGAGTTAAACCAGTTTTACTGAAGTCTAATTTCTCTGCTAAAGCATT-------CTATTTTGTGTGAAAT------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489477 235 + 131632457 -CCTCT--------CCCTGCTTGCCCCGTCAATGCTCAAATGGGGAGAC-TGAATATGATCTCTGGAGTCATCTAAGGCTACCTACCTGCAGCAAAACAGCATAGCTGGAGAGC------TTCTGTCAGAACAGTGACAGCAACTG--TGTTTCATTGTCGTATAAGAATCAGTGGAGCTTACGA----GATTAGGAGTTAAACCAGTTTTACTGAAGTCTAATTTCTCTGCTAAAGCATT-------CTATTTTGTATGAAAT------------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711431 236 + 135000294 -CCTCT--------CCCTCCTTGACCAGTCAGTGCTCAAAT-GGGAGAC-TGATTATGGTCTCTGGCTTCATCTCTGGCTACCTAACTGCTGCAAAACAGAATAGCTGGAGAGC------ACTCATCAAACCAATGACAACAACTGTATGTTTCATGGTCATATAAGAATCAGTGGAGCTTACTA----CATTGGAAGTTAAAACAGTTTTACTGAAGTCTAATTTCTCTGATAAAGCATT-------CAATTTTCTGTGAAAT------------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673412 235 + 6458163 -CCTCT--------CCCTGCTTGCCCCGTCAGTGCTCAAATGGGGAGAT-TGAATATGATCTCTGGCTTCATCTAAGGCTACCTAACTGCAGCAAAACAGCATAGCTGGAGAGC------TCCTGTCAGAACAGTGACAGCAACTG--TGTTTCATTGTCATATAAGAATCAGTGGAGCTTACGA----GATTAGGAGTTAAACCAGTTTTACTGAAGTCTAATTTCTCTGCTAAAGCATT-------CTATTTTGTATGAAAT------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082167 241 + 106825570 -CCTGT--------CCCTGCTTGCCCTGTCAGTGCTCAAATTGGGAGAT-TGAATATGATCTCTGGCTTCATCTAAGGCTACCTACCTGCAGCAAAGCAGCATAGCTGGAGAGAACAGTGTCCTGTCAGAACAGTGACAGCAACTG--CGTTTCATTGTCATATAAGAATCAGTGGAGCTTACTA----GATTAGGAGTTAAACCAGTTTTACTGAAGTCTAAGTTCTCTGCTAAAGTATT-------CTATTTTGTATGAAAT------------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762230 225 + 158406734 -CCTCT--------CCCTGCTTGCTCAGTCAGTGCTAAAATGGGGAGAC-TGAGTATGGGCTCTGGCTTCATCTAAGGCTACTTACCTGCAGCAAAACAGCATAGCTGGAGAGC------TCCTGTCAGACCAGTGACAGCAAATG--TGTTTCATTATCATTTAAGAATCAGTGGAGCTTACTA----GATTAGA---------AGTTTTACT-AAGTCTAATTTCTCTGCTAAAGCATT-------CCATTTTGTATGAAAT------------- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11514 236 + 18451090 --CTCT--------CCCTCCTTGACCAGTCAGTGCTCAAATAGGAAGAC-TGATTATGGTCTCCCACTTCATCTCTGGCTACATAACTGCAGCAAAACAGCATAGCTGGAGAAC------TCCCATCAAACTAATTACAACAACTGTATGTTTCAGTGTCATATAAGAATCAGTGGCATGAACTA----CATTGGGAGTTAAAACAGTTTTACTGAAGTCTAATTTCTCTGATAAAGCATT-------CTATTTTGTATGAAGT------------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28840671 234 - 32117204 -CCTTTCCCAGCCCCCCTGCTTGTCCAGTCAGTGCTCAAATTTGAAGACACAAGTTCAATCTCTGGCTT--TCTAAGG---------GGCAGCGAAACAGCATAGCTGGAGAGC------TCCCAGCAGAACAGTGATGGTAGCTGTGTATTTCATTGTCATGTAAGAATAAGTGGGGTTTACTA----GA-TGGGAGTTAAAACAGTTTTATTGAAGCCTGATTTCTCTGCTAAGGCTTT-------CAATTTTGTAAACAAT------------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515073 249 + 51628933 CCCTCT--------CTCTGCTCAGTTAGTCAGATCTCAATTAAGGAGACATAAGTTCAATCTCTCACTTTGCCTGTGGTTACC-AACTGCAGTGAAATAGTGTGGCTGGAGATC------TCCCTTCAGAATG-TGGCAGCTGTTGTGTATTTCATTGTCATATAAGAACCAGCGAGGCTGACTA----GATTGGGAG-TAAGGAAGTTTTATTGAGGCTTGATTTCTCCATAAAAGCATT-------CCGTTTTGTGTAGGATTTGAAGGGTAAGA i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1071946 250 - 2169676 CACTCT--------CTCTGCTCAGTCAGTCAGATCTCAATTATGGAGACGTAAGTACAGTCTCTCACTTTGTCTCCAGCTACCTAACCGCAGTGAAATAGTGTGGCTGGAGAGC------TCCCTTCAGAACA-TGGCAGCTGTTGTGTGTTTCATTGTCATGTAAGAACCGGTGAGGCTGACTA----GATTGGGAG-TAAGGCAGTTTTACTGAAGCCTGATTTTTCTGTAAAAGCATT-------CTGGTTTGTGTGGGATTTGAAGAGTAAGA i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17879582 250 + 84719076 TCCTCT--------CTCTGCTTGCTCAGTCAGAGCTCACATAGGAAGGTAAAAGTGTGGTCTCTCACTCTGTCTCCAGCTACCTAACTGGAGGGAAATAGGATAGATGATGACT------TCCCTTCTGAACA-TGACAGAAGCTGTATGTTTCATTGTCATGTAAGAATCAGTGAGGCTGACTA----GATTGGGGGTTAAGATAGTTTTATTGAAGCCTGATTTCTCTTCTAAAGCCTT-------CTG-TCTGTGTGAGATTTGAAAGGTGAGA i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312150 304 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19344 256 - 63237 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 124917 328 + 176633 I a score=38381.000000 s mm10.chr1_GL456221_random 136335 8 + 206961 T--AGGGGTA s rn5.chr9 92380622 8 + 121549591 T--AGGGGTA i rn5.chr9 C 0 I 5 s speTri2.JH393335 4167430 8 - 10418462 C--AAGGGAG i speTri2.JH393335 C 0 I 3 s hg19.chr2 231154978 10 + 243199373 TTGAAAGGTG i hg19.chr2 C 0 I 15 s panTro4.chr2B 235533013 10 + 247518478 TTGAAAGGTG i panTro4.chr2B C 0 I 15 s gorGor3.chr2B 119489712 10 + 131632457 TTGAAAGGTG i gorGor3.chr2B C 0 I 15 s ponAbe2.chr2b 122711667 10 + 135000294 TTGAAAGGTG i ponAbe2.chr2b C 0 I 15 s nomLeu2.GL397366 3673647 10 + 6458163 TTGAAAGGTG i nomLeu2.GL397366 C 0 I 15 s rheMac3.chr12 94082408 10 + 106825570 TTGAAAGGTG i rheMac3.chr12 C 0 I 15 s calJac3.chr6 146762455 10 + 158406734 TTGAAAGGTG i calJac3.chr6 C 0 I 15 s saiBol1.JH378144 11750 10 + 18451090 TTGAAATGTG i saiBol1.JH378144 C 0 I 15 s otoGar3.GL873532 28840905 10 - 32117204 TTGAGGGGTG i otoGar3.GL873532 C 0 I 14 s turTru2.JH486691 19600 8 - 63237 --TAGAGGTA i turTru2.JH486691 I 256 I 804 s canFam3.chr25 42515322 8 + 51628933 --GAGAGGTA i canFam3.chr25 C 0 I 4 s ailMel1.GL192536.1 1072196 8 - 2169676 --TAGAGGGA i ailMel1.GL192536.1 C 0 I 4 s equCab2.chr6 17879832 8 + 84719076 --TAGAGGTA i equCab2.chr6 C 0 I 4 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312150 304 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 124917 328 + 176633 I a score=223231.000000 s mm10.chr1_GL456221_random 136343 35 + 206961 TTTTGTCACTATGTATCTAATATGCCACTTGCAAG s rn5.chr9 92380635 35 + 121549591 TTTTGTCACTATGTATCCAATATGCCCCTTGCAAG i rn5.chr9 I 5 C 0 s speTri2.JH393335 4167441 34 - 10418462 TTTCATTATTATCTATCCAAAATACTACTTG-GAC i speTri2.JH393335 I 3 C 0 s hg19.chr2 231155003 35 + 243199373 TTCTGTAATTATGTATCAAAAATGCCACTTGGAAG i hg19.chr2 I 15 C 0 s panTro4.chr2B 235533038 35 + 247518478 TGCTTTAATTATGTATCAAAAATGCCACTTGGAAG i panTro4.chr2B I 15 C 0 s gorGor3.chr2B 119489737 35 + 131632457 TTCTGTAACTATGTATCAAAAATGCCACTTGGAAG i gorGor3.chr2B I 15 C 0 s ponAbe2.chr2b 122711692 35 + 135000294 TTCTGTAGTTACATATCAAAAATGCCACTTGGAAG i ponAbe2.chr2b I 15 C 0 s nomLeu2.GL397366 3673672 35 + 6458163 TTCTGTAATTATGTATCAAAAATGCCACTTGGAAG i nomLeu2.GL397366 I 15 C 0 s rheMac3.chr12 94082433 35 + 106825570 TTCTGTAATTATGTATCAAAAATGCCACTTGGAAG i rheMac3.chr12 I 15 C 0 s calJac3.chr6 146762480 35 + 158406734 TTCTGTAGTTATGTATCAAAAGTGCCACTTAGAAG i calJac3.chr6 I 15 C 0 s saiBol1.JH378144 11775 35 + 18451090 TTCTGTATTTATGTATCAAAAATGCCACTTGGAAG i saiBol1.JH378144 I 15 C 0 s otoGar3.GL873532 28840929 34 - 32117204 TTTTATAGTTATGCAT-GAAAATGCCACTTGAAAG i otoGar3.GL873532 I 14 I 317 s canFam3.chr25 42515334 35 + 51628933 TTCTGTAGTTACGTATCAAAAATGTCACTTGGAAG i canFam3.chr25 I 4 C 0 s ailMel1.GL192536.1 1072208 35 - 2169676 TTCTGTAGTCATCTATCAAAAATGTCACATGGAAT i ailMel1.GL192536.1 I 4 C 0 s equCab2.chr6 17879844 34 + 84719076 TTCTGTAGTTATATATCAAAAATACCAC-TGGAAG i equCab2.chr6 I 4 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312150 304 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 124917 328 + 176633 I a score=72796.000000 s mm10.chr1_GL456221_random 136378 12 + 206961 AAAGATTTAG--AA s rn5.chr9 92380670 12 + 121549591 AAAGATTTAG--AA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167475 12 - 10418462 AATGATGTTA--AC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155038 12 + 243199373 AAAGACTTTG--AA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533073 12 + 247518478 AAAGACTTTG--AA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489772 12 + 131632457 AAAGACTTTG--AA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711727 12 + 135000294 AAAGACTTTG--AA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673707 12 + 6458163 AAAGACTTTG--AA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082468 12 + 106825570 AAAGACTTTG--AA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762515 12 + 158406734 GAAGACTTTG--AA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11810 12 + 18451090 AAAGACTTTG--AA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841280 12 - 32117204 aaaGATTTTG--GA i otoGar3.GL873532 I 317 I 2 s canFam3.chr25 42515369 12 + 51628933 AAAGACTCTG--AC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072243 12 - 2169676 GAAGACTCTG--AT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879878 14 + 84719076 AAAGACTTCGAAAT i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312150 304 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 124917 328 + 176633 I a score=-15960.000000 s mm10.chr1_GL456221_random 136390 1 + 206961 -G s rn5.chr9 92380682 1 + 121549591 -G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167487 1 - 10418462 -T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155050 1 + 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533085 1 + 247518478 -A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489784 1 + 131632457 -A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711739 1 + 135000294 -A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673719 1 + 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082480 1 + 106825570 -A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762527 1 + 158406734 -A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11822 1 + 18451090 -A i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 125245 1 + 176633 -A i micMur1.scaffold_3075 I 328 C 0 s otoGar3.GL873532 28841294 1 - 32117204 -A i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42515381 1 + 51628933 T- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072255 1 - 2169676 G- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879892 1 + 84719076 T- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312150 304 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=13600.000000 s mm10.chr1_GL456221_random 136391 1 + 206961 C s rn5.chr9 92380683 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167488 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155051 1 + 243199373 C i hg19.chr2 C 0 I 2 s panTro4.chr2B 235533086 1 + 247518478 C i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119489785 1 + 131632457 C i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122711740 1 + 135000294 C i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3673720 1 + 6458163 C i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94082481 1 + 106825570 C i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146762528 1 + 158406734 C i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 11823 1 + 18451090 C i saiBol1.JH378144 C 0 I 2 s micMur1.scaffold_3075 125246 1 + 176633 C i micMur1.scaffold_3075 C 0 I 307 s otoGar3.GL873532 28841295 1 - 32117204 C i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515382 1 + 51628933 C i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072256 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879893 1 + 84719076 C i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26312454 1 + 30916457 C i myoLuc2.GL429770 I 304 I 366 e pteVam1.scaffold_9232 42095 3492 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=250696.000000 s mm10.chr1_GL456221_random 136392 53 + 206961 TGGAGATGTAAGGGTCAAAATGTCC-CAAGT------------GTTAAAGGAATGGCCCCAA-G----AGG- s rn5.chr9 92380684 53 + 121549591 TAGAGATGTGAGGATCAAAATGTCC-CAAGT------------GTTAAAGGAATGACCCCAA-G----AGG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167489 65 - 10418462 TTGAGATTTGTGGGGCTGAATTTCCTTAAGTA--CTTCCTGCCGTTACAGGAATGACCTCAATA----AGG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155054 65 + 243199373 TAGAGGGTTTTGGAATAGAATTTCC-TAAGTATCCCTCGTGTCTTTATAGGAATTACCTCAG-T----AGG- i hg19.chr2 I 2 C 0 s panTro4.chr2B 235533089 65 + 247518478 TAGAGGTTTTTGGAATAGAATTTCC-TAAGTATCCCTCGTGTCTTTATAGGAATTACCTCAG-T----AGG- i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119489788 65 + 131632457 TAGAAGTTTTTGGAATAGAATTTCC-TAAGTATCCCTCGTGTCTTTATAGGAATTTCCTCAG-T----AGG- i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122711743 65 + 135000294 TAGAGATTTATGGAATAGAATTTCC-TAAGTACTCTTTGTGCCTTTATAGGATTTACCTCAG-T----GGG- i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3673723 65 + 6458163 TAGAGGTTTTTGGAATAGAATTTCC-TAAGTATCCCACGTGTCTTTATAGGAATTACCTCAG-T----AGG- i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94082484 69 + 106825570 TAGAGGTTTTTGGAATAGAATTTCC-TAAGCATCCCTTGTGTCTTTCTAGGAATTACCTCAG-TAGGGAGG- i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146762531 65 + 158406734 CAGAAATTTTTGGAATAGATTTTTC-TAAGTATCCCTTGTGTCTATAAAGGAATTACCTCAG-T----AGG- i calJac3.chr6 I 2 C 0 s saiBol1.JH378144 11826 65 + 18451090 TAGAGATTTTTGGAATAGAATTTCT-TAAACACTCTTTGTGCCTTTATAGGAATTACCTCAG-T----GGG- i saiBol1.JH378144 I 2 C 0 s otoGar3.GL873532 28841296 62 - 32117204 TGGAGATTCATGGACTAG--TTTCC-TAAGCACACCT-GTGTCTTCTTAGGAATGGCCTCAG-T----AAG- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515383 65 + 51628933 TGGAGATTTGTGGAGTAGACTCCCC-TAAGCACCTCT-ATATCTCTATAGGAACAAAATCCA-C----AAGG i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1072257 63 - 2169676 TGCAGATTTGTAGAATGGATTTCCC-TGAGCACCTCT-AGAT-TTTATAGGAAC-AAATCCA-C----AGGG i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17879894 63 + 84719076 TAGAGACTTGTGGAATAG--TTTCC-TAAGTGCCCCT-GTGTCTTTATAGGAATGACCTCAA-C----AGGG i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=22085.000000 s mm10.chr1_GL456221_random 136445 6 + 206961 ---GAGA---AG s rn5.chr9 92380737 6 + 121549591 ---GAGA---AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167554 6 - 10418462 ---GAGG---AG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155119 6 + 243199373 ---GAGG---GG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533154 6 + 247518478 ---GAGG---GG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489853 6 + 131632457 ---GAGG---GG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711808 6 + 135000294 ---GAGG---GG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673788 6 + 6458163 ---GAGG---GG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082553 6 + 106825570 ---GAGG---GG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762596 6 + 158406734 ---GAGG---GG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11891 6 + 18451090 ---GAGG---GG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841358 9 - 32117204 ---GAAGGAAGG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515449 9 + 51628933 TGCAGAG---AT i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1072321 9 - 2169676 TGGAGAG---GT i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17879958 9 + 84719076 AGGAAGG---AT i equCab2.chr6 I 1 C 0 s sorAra1.scaffold_171571 3985 9 - 4809 GAGGAAG---AT i sorAra1.scaffold_171571 N 0 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14041 871 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=13600.000000 s mm10.chr1_GL456221_random 136451 1 + 206961 G s rn5.chr9 92380743 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167560 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155125 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533160 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489859 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711814 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673794 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082559 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762602 1 + 158406734 G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11897 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841367 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515458 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072330 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879967 1 + 84719076 G i equCab2.chr6 C 0 C 0 s sorAra1.scaffold_171571 3994 1 - 4809 g i sorAra1.scaffold_171571 C 0 C 0 s choHof1.scaffold_14362 14912 1 + 23990 G i choHof1.scaffold_14362 I 871 I 2882 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=540658.000000 s mm10.chr1_GL456221_random 136452 102 + 206961 AGGAATTGAGCTATTGAAAAG-TGACACACAA------GAAG-------A----AATCCTCT-TTCCAGGTCT---AAGAAGACGCAGAAAAGAAAATTCCAATTTTAGTGCTGAGTTGCTTCC s rn5.chr9 92380744 109 + 121549591 GGGAATTGAGCAACTGCAAAG-TGAGACTGAA------GAAGGAAAAAAA----AATCCTCT-TTCCAGGTCC---AAGAAGGCACGGGAAGGAAATGGCCAATTTTAACGCGGAGTTGCTACC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167561 102 - 10418462 GGGCA-TGTGCAATTGGAAAG-TGAACTGGGA------TGAA-------G----ACCCTTCTCTTGCAGGTTC---AAGAAAGGTCAGAAATCAATTTGTGGATTTTTGTGCTCCATTACTTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155126 100 + 243199373 GA----CGTGCCTTTGCAAAG-TGAGACAGAA------TGAAG------A----AATCCTCTCTTTCAGCTTC---AAGAAAGCACAAAGATGAAACTGTGGATTTTAAGGCTCCTTTGCTTCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533161 100 + 247518478 GA----CGTGCCTTTGCAAAG-TGAGACAGAA------TGAAG------A----AATCCTCTCTTTCAGCTTC---AAGAAAGCACAAAGATGAAACTGTGGATTTTAAGGCTCCTTTGCTTCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489860 100 + 131632457 GA----CGTGCCTTTGCAAAG-TGAGACAGAA------TGAAG------A----AATCCTCTCTTTCAGCTTC---GAGAAAGCACAAAGACGAAACTGTGGATTTTAAGGCTCCTTTGCTTCC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711815 100 + 135000294 GA----TGTGCCTTTGCAAAA-TGAGACAGAA------TGAAG------A----AATCCTCTCTTTCAGCTTC---AAGAAAGCACAAAGATGAAACTGTGGATTTTCAGGCTCCTTTACTTCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673795 100 + 6458163 GA----CGTGCCTTTGCAAAG-TAAGACAGAA------TGAAG------A----AATCCTCTCTTTCAGCTTC---AAGAAAGCACAAAGATGAAACTGTGGATTTTAAGGCCCCTTTGCTTCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082560 100 + 106825570 GA----TGTGCCTTTGCAAAG-TGAAACAGAA------TGAAG------A----AATCCTCTCTTTCAGCTTC---AAGAAAGCACAAAGATGAAACTGTGGATTTTCAGGCTCCTTTACTTCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762603 100 + 158406734 GA----TGTGCCTTTGCAAAG-TGAGACAGAG------TGAAG------A----AATCCTCTCTTTCAGCTTC---AAGAAAGCGCAAAGACAAAACTGTGGATTTTAAGGCTCCTTTACTTCC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11898 98 + 18451090 GA----TGTGACTTTGCAAAG-TGAGATATAG------TGAAG------A----AATC--CTCTTTCAGCTTC---AAGAAGGTACAAAGATGAAACTGTGGATTTTGAGGATCCTGCACTTCT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841368 100 - 32117204 CA----TGTGTATTTGCAAAA-TGAGACAGAA------TGAAG------A----AATCTTCTCTTTCAGCCTC---AAGAATACCCAGAGATCCAACTATGGATTTTCAGGCTCCTTTGCTTAC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515459 103 + 51628933 CA----TGTGCATTTGTAAAA-TGAGGCAGAA------CGAGG------A----AATCTTCTCTTTCAGGGTCAAGAAGAAGACGCAAAGATGATAGGGTGAATTTTCACTCTCAAATACTTCC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072331 100 - 2169676 CA----TGCGCATTTGCAGAA-TGAGGCAGAA------TGAGG------A----AATCTTCTCTTTCAGGGTC---AAGAAAGCACAGAGGCGATAGTGTGAATTTTCACTCTCAAATACTTCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17879968 100 + 84719076 CA----TGTACAATCGCAAAA-TGAAACATAA------TGAAG------A----AATCTTCTCTTTCAGGGTC---AAGAAAGTACACAGATAAAAGTGTAGATTTTCACTCTCAAATACTTCC i equCab2.chr6 C 0 C 0 s sorAra1.scaffold_171571 3995 110 - 4809 ga----t-taaaaaagcaaaactaagacAAAAATCAACCAAAC------ACCATGATGTCTCCTGGCAGGTCC---AAGAAttcccaaagacaaaaatatgaaCTTTGATGTTCCTGAGCTGCC i sorAra1.scaffold_171571 C 0 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 9567 516 + 11994 I e papHam1.scaffold13267 55482 922 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=31082.000000 s mm10.chr1_GL456221_random 136554 4 + 206961 CGTG s rn5.chr9 92380853 4 + 121549591 TGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167663 4 - 10418462 TGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155226 4 + 243199373 AGTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533261 4 + 247518478 AGTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489960 4 + 131632457 AGTG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711915 4 + 135000294 AGTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673895 4 + 6458163 AGTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082660 4 + 106825570 GGTG i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 56404 4 + 66950 GGTG i papHam1.scaffold13267 I 922 C 0 s calJac3.chr6 146762703 4 + 158406734 AGTG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 11996 4 + 18451090 GGTG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841468 4 - 32117204 TGTG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515562 4 + 51628933 TGTA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072431 4 - 2169676 TGTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880068 4 + 84719076 TGTG i equCab2.chr6 C 0 C 0 s sorAra1.scaffold_171571 4105 4 - 4809 CGTG i sorAra1.scaffold_171571 C 0 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 9567 516 + 11994 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=31580.000000 s mm10.chr1_GL456221_random 136558 3 + 206961 ACA s rn5.chr9 92380857 3 + 121549591 ACG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167667 3 - 10418462 AGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155230 3 + 243199373 ACC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533265 3 + 247518478 ACC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489964 3 + 131632457 ACC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711919 3 + 135000294 ACC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673899 3 + 6458163 ACC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082664 3 + 106825570 ACC i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 56408 3 + 66950 ACC i papHam1.scaffold13267 C 0 I 105 s calJac3.chr6 146762707 3 + 158406734 ACC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12000 3 + 18451090 ACC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841472 3 - 32117204 ACC i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 10083 3 + 11994 ACC i vicPac1.scaffold_13731 I 516 C 0 s canFam3.chr25 42515566 3 + 51628933 ACC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072435 3 - 2169676 ACC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880072 3 + 84719076 ACT i equCab2.chr6 C 0 C 0 s sorAra1.scaffold_171571 4109 3 - 4809 ACC i sorAra1.scaffold_171571 C 0 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=51952.000000 s mm10.chr1_GL456221_random 136561 4 + 206961 TGTG s rn5.chr9 92380860 4 + 121549591 TGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167670 4 - 10418462 TGTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155233 4 + 243199373 TGTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533268 4 + 247518478 TGTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489967 4 + 131632457 TGTG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711922 4 + 135000294 TGTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673902 4 + 6458163 TGTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082667 4 + 106825570 TGTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762710 4 + 158406734 TGTG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12003 4 + 18451090 TGTG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841475 4 - 32117204 TGTG i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 10086 4 + 11994 TGTG i vicPac1.scaffold_13731 C 0 I 1010 s canFam3.chr25 42515569 4 + 51628933 TGTG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072438 4 - 2169676 TGTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880075 4 + 84719076 TGTG i equCab2.chr6 C 0 C 0 s sorAra1.scaffold_171571 4112 4 - 4809 TGTG i sorAra1.scaffold_171571 C 0 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e papHam1.scaffold13267 56411 105 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=516250.000000 s mm10.chr1_GL456221_random 136565 81 + 206961 GTAACTTGAAGGGAGTGTTACACAAGGATAAATTCAAACAAGGTGGGCTTCATGG---TTTTTGTTTTGCAAATGCTAAATTTT---------- s rn5.chr9 92380864 81 + 121549591 GTAACTTGAAGGGAGTATTACACAAGGATAAATTCAAACAAGGTAGGTTTCATGG---TTTTTAATTTGCAATTGATAAGTTTA---------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167674 84 - 10418462 GTGAGCTGAAAGGAATTTTATTTAAGGAGAAATTGGAAAAAGGTGGGTTTCACTGTCTTCTTTAATTTGTAACTACTATCTGAA---------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155237 84 + 243199373 GTGGGGTGAAGGGAATTTTACATAAGAAGAAATTGCAGCAAGGTAGGTTTTATGGTCTTCTTTAATTTGCAGCTCCTATCTGAA---------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533272 84 + 247518478 GTGGGGTGAAGGGAATTTTACATAAGAAGAAATTGCAGCAAGGTAGGTTTTATGGTCTTCTTTAATTTGCAGCTCCTAACTGAA---------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119489971 83 + 131632457 GTGGGGTGAAGGGAATTTTACATAAGAAGAAATTGCAGCAAGGTAGGTTTTATGGTCTTCTTTAATTTGC-GCTCCTATCTGAA---------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122711926 84 + 135000294 GTGGGGTGAAGGGAATTTTACATAAGGAGAAATTGGAACAAGGTGGGTTTCATAGTCTTCTTTAATTTGCAGCTCCTATCTGAA---------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3673906 84 + 6458163 GTGGGGTGAAGGGAATTTTACATAAGAAGAAATTGAAACAAGGTAGGTTTTATGGTCTTCTTCAATTTGCAGCTCCTATCTGAA---------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082671 84 + 106825570 GTGGGGTGAAGGGAATTTTACATAAGAAGAAATTGAAACAAGGTGGGTTTCATGGTCTTCTTTAAATTGCAGCTCCTATCTGAA---------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762714 84 + 158406734 GTGAGGTGAAAGGAATTTTACATAAGAAGAATTTGAAACAAGGTAGGTTTTATGGTCTTCTTTAATTTGCAGCTCCTATCTGAA---------- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12007 79 + 18451090 GTGAGGTAAAGGGGATTTTATACAAGAAGAAATTGGAACGAGGTGAGTTTTA-----TTTTTCAATTTGCAGCTCCTCTCTGAA---------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841479 81 - 32117204 GTGAGGCAAAGGGTACTTTACATAAGAAGAAATTGAAACAAGGTGGGTTTCATG---CTCTTTAATTTGCAGCTCCTACATGAA---------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515573 75 + 51628933 GTGAGGTGAAGGGGATGTTATATAAGAAGAAACTGAAACAAGGTGAGTTCCATGGTCTCCTTTGATTTGCAGT---------AT---------- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072442 75 - 2169676 GTAAGGTGAAGGGGATGTTATATAAAAAGAGACTGAAACGAGGTGAGTTCCGCGATCTACTTTGATTTGCAGT---------AT---------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880079 84 + 84719076 GTCTGGTGAAGGGGATGTTATATAAGAAGAAATTGAAACGAGGTGGGTTTCAAGGTCCACTTTAATTTGCAACTTCTATCTGAA---------- i equCab2.chr6 C 0 C 0 s sorAra1.scaffold_171571 4116 84 - 4809 GCGAGGTGAAGGGGACTTTGTACAAGGAGAAATTCAAGACAGGTAAGTGCCGTGGTCTTCTCTGCTTTTCAG----------ATGAAAAGTATT i sorAra1.scaffold_171571 C 0 N 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56411 105 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=61108.000000 s mm10.chr1_GL456221_random 136646 13 + 206961 GAAATCACATGTA s rn5.chr9 92380945 13 + 121549591 AAAATCACACGTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167758 13 - 10418462 GGATTCCCAGGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155321 13 + 243199373 GGCATCACAAGTA i hg19.chr2 C 0 I 4 s panTro4.chr2B 235533356 13 + 247518478 GGCATCACAAGTA i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119490054 13 + 131632457 GGCATCACAAGTA i gorGor3.chr2B C 0 I 4 s ponAbe2.chr2b 122712010 13 + 135000294 GGCATCACAAGAA i ponAbe2.chr2b C 0 I 5 s nomLeu2.GL397366 3673990 13 + 6458163 GGCATCACAAGTA i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94082755 13 + 106825570 CGCATCACAAGTA i rheMac3.chr12 C 0 I 4 s calJac3.chr6 146762798 13 + 158406734 GGTATCACAAGTA i calJac3.chr6 C 0 I 4 s saiBol1.JH378144 12086 13 + 18451090 GGCATCACAATTA i saiBol1.JH378144 C 0 I 4 s otoGar3.GL873532 28841560 13 - 32117204 GACATCATAAGAA i otoGar3.GL873532 C 0 I 5 s canFam3.chr25 42515648 13 + 51628933 GGAATTACTCATG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072517 13 - 2169676 GGAATTACCCATG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880163 13 + 84719076 GGAATCACAAGGA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56411 105 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=1595.000000 s mm10.chr1_GL456221_random 136659 1 + 206961 A s rn5.chr9 92380958 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167771 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155338 1 + 243199373 G i hg19.chr2 I 4 C 0 s panTro4.chr2B 235533373 1 + 247518478 G i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119490071 1 + 131632457 G i gorGor3.chr2B I 4 C 0 s ponAbe2.chr2b 122712028 1 + 135000294 G i ponAbe2.chr2b I 5 C 0 s nomLeu2.GL397366 3674007 1 + 6458163 A i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94082772 1 + 106825570 G i rheMac3.chr12 I 4 C 0 s papHam1.scaffold13267 56516 1 + 66950 G i papHam1.scaffold13267 I 105 C 0 s calJac3.chr6 146762815 1 + 158406734 G i calJac3.chr6 I 4 C 0 s saiBol1.JH378144 12103 1 + 18451090 G i saiBol1.JH378144 I 4 C 0 s otoGar3.GL873532 28841578 1 - 32117204 G i otoGar3.GL873532 I 5 C 0 s canFam3.chr25 42515661 1 + 51628933 T i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1072530 1 - 2169676 T i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17880176 1 + 84719076 G i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=-4448.000000 s mm10.chr1_GL456221_random 136660 1 + 206961 -T s rn5.chr9 92380959 1 + 121549591 -C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167772 1 - 10418462 -G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155339 1 + 243199373 -G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533374 1 + 247518478 -G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490072 1 + 131632457 -G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712029 1 + 135000294 -A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674008 1 + 6458163 -G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082773 1 + 106825570 -G i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 56517 1 + 66950 -G i papHam1.scaffold13267 C 0 C 0 s calJac3.chr6 146762816 1 + 158406734 -G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12104 1 + 18451090 -G i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28841579 1 - 32117204 -G i otoGar3.GL873532 C 0 C 0 s equCab2.chr6 17880177 1 + 84719076 T- i equCab2.chr6 C 0 I 18 e canFam3.chr25 42515662 1 + 51628933 I e ailMel1.GL192536.1 1072531 1 - 2169676 I e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=12060.000000 s mm10.chr1_GL456221_random 136661 4 + 206961 AATG s rn5.chr9 92380960 4 + 121549591 AATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167773 4 - 10418462 AAGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155340 4 + 243199373 AATT i hg19.chr2 C 0 I 16 s panTro4.chr2B 235533375 4 + 247518478 AATT i panTro4.chr2B C 0 I 16 s gorGor3.chr2B 119490073 4 + 131632457 AATT i gorGor3.chr2B C 0 I 16 s ponAbe2.chr2b 122712030 4 + 135000294 AATT i ponAbe2.chr2b C 0 I 17 s nomLeu2.GL397366 3674009 4 + 6458163 AATT i nomLeu2.GL397366 C 0 I 16 s rheMac3.chr12 94082774 4 + 106825570 AATT i rheMac3.chr12 C 0 I 16 s papHam1.scaffold13267 56518 4 + 66950 AATT i papHam1.scaffold13267 C 0 I 68 s calJac3.chr6 146762817 4 + 158406734 AATT i calJac3.chr6 C 0 I 16 s saiBol1.JH378144 12106 4 + 18451090 AATT i saiBol1.JH378144 I 1 I 17 s otoGar3.GL873532 28841580 4 - 32117204 AATT i otoGar3.GL873532 C 0 I 17 s canFam3.chr25 42515663 3 + 51628933 AAT- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1072532 3 - 2169676 AGT- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17880196 3 + 84719076 AAT- i equCab2.chr6 I 18 C 0 e pteVam1.scaffold_9232 42095 3492 + 60856 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=-2193.000000 s mm10.chr1_GL456221_random 136665 4 + 206961 GAAC s rn5.chr9 92380964 2 + 121549591 CA-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167777 4 - 10418462 GAAT i speTri2.JH393335 C 0 C 0 s canFam3.chr25 42515666 3 + 51628933 -TAT i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1072535 3 - 2169676 -TAC i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17880199 3 + 84719076 -TAC i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_10686 23273 4 + 49512 GAAT i pteVam1.scaffold_10686 n 3492 I 38 e saiBol1.JH378144 12110 17 + 18451090 I e ponAbe2.chr2b 122712034 17 + 135000294 I e otoGar3.GL873532 28841584 17 - 32117204 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e rheMac3.chr12 94082778 16 + 106825570 I e nomLeu2.GL397366 3674013 16 + 6458163 I e gorGor3.chr2B 119490077 16 + 131632457 I e panTro4.chr2B 235533379 16 + 247518478 I e hg19.chr2 231155344 16 + 243199373 I e calJac3.chr6 146762821 16 + 158406734 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56522 68 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I a score=187.000000 s mm10.chr1_GL456221_random 136669 1 + 206961 T s speTri2.JH393335 4167781 1 - 10418462 T i speTri2.JH393335 C 0 I 17 s canFam3.chr25 42515670 1 + 51628933 C i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1072539 1 - 2169676 C i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17880203 1 + 84719076 T i equCab2.chr6 I 1 C 0 e saiBol1.JH378144 12110 17 + 18451090 I e ponAbe2.chr2b 122712034 17 + 135000294 I e otoGar3.GL873532 28841584 17 - 32117204 I e pteVam1.scaffold_10686 23277 38 + 49512 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e rheMac3.chr12 94082778 16 + 106825570 I e nomLeu2.GL397366 3674013 16 + 6458163 I e gorGor3.chr2B 119490077 16 + 131632457 I e panTro4.chr2B 235533379 16 + 247518478 I e hg19.chr2 231155344 16 + 243199373 I e calJac3.chr6 146762821 16 + 158406734 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56522 68 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125247 307 + 176633 I e rn5.chr9 92380966 0 + 121549591 C a score=23402.000000 s mm10.chr1_GL456221_random 136670 3 + 206961 ATT s rn5.chr9 92380966 3 + 121549591 ATC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167799 3 - 10418462 AAC i speTri2.JH393335 I 17 C 0 s hg19.chr2 231155360 3 + 243199373 ATC i hg19.chr2 I 16 C 0 s panTro4.chr2B 235533395 3 + 247518478 ATC i panTro4.chr2B I 16 C 0 s gorGor3.chr2B 119490093 3 + 131632457 ATC i gorGor3.chr2B I 16 C 0 s ponAbe2.chr2b 122712051 3 + 135000294 ATC i ponAbe2.chr2b I 17 C 0 s nomLeu2.GL397366 3674029 3 + 6458163 ATC i nomLeu2.GL397366 I 16 C 0 s rheMac3.chr12 94082794 3 + 106825570 ATC i rheMac3.chr12 I 16 C 0 s calJac3.chr6 146762837 3 + 158406734 ATC i calJac3.chr6 I 16 C 0 s saiBol1.JH378144 12127 3 + 18451090 ATC i saiBol1.JH378144 I 17 C 0 s micMur1.scaffold_3075 125554 3 + 176633 ATC i micMur1.scaffold_3075 I 307 I 48 s otoGar3.GL873532 28841601 3 - 32117204 ATC i otoGar3.GL873532 I 17 C 0 s canFam3.chr25 42515671 3 + 51628933 AGC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072540 3 - 2169676 AAC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880204 3 + 84719076 ATC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_10686 23277 38 + 49512 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56522 68 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=122848.000000 s mm10.chr1_GL456221_random 136673 32 + 206961 ACTTAAGGAACTGTGGGGTAAGCACGGCTT----GA s rn5.chr9 92380969 32 + 121549591 ACTTAAGGAACCGTGGGGCAAGCATGGCTT----GA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167802 32 - 10418462 ATTCAAGGAGCTGAGTCTCTAGTTTGACTT----GA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155363 31 + 243199373 ATTCAAGGAG-TTTGGTCCCAGTTTGGCTT----GA i hg19.chr2 C 0 I 7 s panTro4.chr2B 235533398 31 + 247518478 ATTCAAGGAG-TTTGGTCCCAGTTTGGCTT----GA i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 119490096 31 + 131632457 ACTCAAGGAG-TTTGGTCCCAGTTTGGCTT----GA i gorGor3.chr2B C 0 I 7 s ponAbe2.chr2b 122712054 32 + 135000294 ATTCAAGGAGTTTTGGGCCCAGTTTGGCTT----GA i ponAbe2.chr2b C 0 I 7 s nomLeu2.GL397366 3674032 31 + 6458163 ATTCAAGGAG-TTTGGTCCCAGTTTGGCTT----GA i nomLeu2.GL397366 C 0 I 7 s rheMac3.chr12 94082797 31 + 106825570 ATTCAAGGAG-TTTGGCCCCAGTTTGGCTT----GA i rheMac3.chr12 C 0 I 7 s calJac3.chr6 146762840 32 + 158406734 ATTCAAGGAGTTTTGACCCCAGTTTGTCTT----GA i calJac3.chr6 C 0 I 7 s saiBol1.JH378144 12130 31 + 18451090 ATTCAAGGTA-TTTGGCCCCAGATTGGCTC----GA i saiBol1.JH378144 C 0 I 7 s otoGar3.GL873532 28841604 32 - 32117204 ATTCAAGGAGTCTAGGTCCCAGTTTCACCT----GA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515674 18 + 51628933 ATTTAAGGAATTGAAG------------------GA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072543 18 - 2169676 ATTCAAGAAATTGGGG------------------GA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880207 36 + 84719076 ATTCAAGGAATTGGGGCCACAGTTTGGCTTGAGAGA i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_10686 23277 38 + 49512 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56522 68 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125557 48 + 176633 I a score=1768.000000 s mm10.chr1_GL456221_random 136705 2 + 206961 CA s rn5.chr9 92381001 2 + 121549591 CA i rn5.chr9 C 0 I 1 s speTri2.JH393335 4167834 2 - 10418462 GA i speTri2.JH393335 C 0 I 4 s otoGar3.GL873532 28841636 2 - 32117204 GA i otoGar3.GL873532 C 0 I 4 s canFam3.chr25 42515692 1 + 51628933 -A i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1072561 1 - 2169676 -A i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17880243 1 + 84719076 -A i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_10686 23315 1 + 49512 -A i pteVam1.scaffold_10686 I 38 I 342 e saiBol1.JH378144 12161 7 + 18451090 I e ponAbe2.chr2b 122712086 7 + 135000294 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e rheMac3.chr12 94082828 7 + 106825570 I e nomLeu2.GL397366 3674063 7 + 6458163 I e gorGor3.chr2B 119490127 7 + 131632457 I e panTro4.chr2B 235533429 7 + 247518478 I e hg19.chr2 231155394 7 + 243199373 I e calJac3.chr6 146762872 7 + 158406734 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56522 68 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125557 48 + 176633 I a score=-652.000000 s mm10.chr1_GL456221_random 136707 1 + 206961 C s rn5.chr9 92381004 1 + 121549591 C i rn5.chr9 I 1 C 0 s speTri2.JH393335 4167840 1 - 10418462 G i speTri2.JH393335 I 4 C 0 s otoGar3.GL873532 28841642 1 - 32117204 G i otoGar3.GL873532 I 4 C 0 s canFam3.chr25 42515694 1 + 51628933 G i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1072563 1 - 2169676 G i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17880245 1 + 84719076 A i equCab2.chr6 I 1 C 0 e saiBol1.JH378144 12161 7 + 18451090 I e ponAbe2.chr2b 122712086 7 + 135000294 I e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e rheMac3.chr12 94082828 7 + 106825570 I e nomLeu2.GL397366 3674063 7 + 6458163 I e gorGor3.chr2B 119490127 7 + 131632457 I e panTro4.chr2B 235533429 7 + 247518478 I e hg19.chr2 231155394 7 + 243199373 I e calJac3.chr6 146762872 7 + 158406734 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56522 68 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125557 48 + 176633 I a score=77573.000000 s mm10.chr1_GL456221_random 136708 10 + 206961 AGGAAGGGA-T s rn5.chr9 92381005 10 + 121549591 GGGAAGGGA-T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167841 11 - 10418462 AGGAAGGAATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155401 10 + 243199373 AGGAAGGGA-T i hg19.chr2 I 7 I 1 s panTro4.chr2B 235533436 10 + 247518478 AGGAAGGGG-T i panTro4.chr2B I 7 I 1 s gorGor3.chr2B 119490134 10 + 131632457 AGGAAGGGA-T i gorGor3.chr2B I 7 I 1 s ponAbe2.chr2b 122712093 10 + 135000294 AGGAAGGGA-T i ponAbe2.chr2b I 7 I 1 s nomLeu2.GL397366 3674070 10 + 6458163 AGGAAGGGG-T i nomLeu2.GL397366 I 7 I 1 s rheMac3.chr12 94082835 10 + 106825570 AGGAAGGGA-T i rheMac3.chr12 I 7 I 1 s calJac3.chr6 146762879 10 + 158406734 AGGAAGGGA-T i calJac3.chr6 I 7 I 1 s saiBol1.JH378144 12168 10 + 18451090 AGGAAGGGA-T i saiBol1.JH378144 I 7 I 1 s otoGar3.GL873532 28841643 10 - 32117204 AGAAAGGGG-T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515695 10 + 51628933 AGGAAGGGA-T i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1072564 10 - 2169676 AGGATGGGG-T i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17880246 10 + 84719076 AGGAAGTGA-T i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56522 68 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125557 48 + 176633 I a score=4005.000000 s mm10.chr1_GL456221_random 136718 1 + 206961 C s rn5.chr9 92381015 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167852 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155412 1 + 243199373 T i hg19.chr2 I 1 C 0 s panTro4.chr2B 235533447 1 + 247518478 T i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119490145 1 + 131632457 T i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122712104 1 + 135000294 C i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3674081 1 + 6458163 T i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94082846 1 + 106825570 T i rheMac3.chr12 I 1 C 0 s papHam1.scaffold13267 56590 1 + 66950 T i papHam1.scaffold13267 I 68 I 382 s calJac3.chr6 146762890 1 + 158406734 C i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 12179 1 + 18451090 C i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 28841653 1 - 32117204 C i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515706 1 + 51628933 C i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1072575 1 - 2169676 C i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17880257 1 + 84719076 C i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312455 366 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125557 48 + 176633 I a score=11504.000000 s mm10.chr1_GL456221_random 136719 1 + 206961 C s rn5.chr9 92381016 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167853 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155413 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533448 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490146 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712105 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674082 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082847 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762891 1 + 158406734 C i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12180 1 + 18451090 C i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 125605 1 + 176633 C i micMur1.scaffold_3075 I 48 I 73 s otoGar3.GL873532 28841654 1 - 32117204 C i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42515707 1 + 51628933 C i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072576 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880258 1 + 84719076 C i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26312821 1 + 30916457 C i myoLuc2.GL429770 I 366 I 166 e pteVam1.scaffold_10686 23316 342 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=287017.000000 s mm10.chr1_GL456221_random 136720 72 + 206961 TGATGTGCTATTTTCACACTTGAAGAAACAAT---------ACATAATAGATGCTCACAACAACGTGA-ATATAGACAC-GAG s rn5.chr9 92381017 72 + 121549591 TGACACGCTATTTTCACACTTGAAGAAACCAT---------ACGTAATAGATGTTCATGACAGTGTGA-ATGTGGCCAC-GAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167854 67 - 10418462 TAAGATGATATTTTTACACT--GAGAAATCAC---------ATATATTAGATGCTCTC----ACATGG-GCTTGTCCATAGTA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155414 71 + 243199373 TAAGATGACGTTTACAGACTTTAAGAAATCGC---------AACCACCAGATGCTCACTTGCACATGG-A-ATGTCCAG-AGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533449 71 + 247518478 TAAGATGACGTTTACAGACTTTAAGAAATCGC---------AACCATTAGATGCTCACTTGCACGTGG-A-ATGTCCAG-AGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490147 71 + 131632457 TAAGATGACGTTTACAGACTTTAAGAAATCGC---------AACCATTAGATGCTCACTTGCACGTGG-A-ATGTCCAG-AGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712106 71 + 135000294 TAAGATGACATTTTCAGACTTTAAGAAATCAC---------ACCCATTAGATGCTGATTCACATATGG-A-GTGTCCAG-GGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674083 71 + 6458163 TAAGATAACATTTTCAGACTTTAAGAAATCAC---------ACCCATTAGATGCTCACTCACACATGG-A-ATGTCCAG-AGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082848 71 + 106825570 TAAGATGATGTTTTCAGACTTTAAGAAATCAC---------GCCCATTAGATGCTGACTTGCACATGG-A-GTGTTCAG-GGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762892 70 + 158406734 TAAGATGACA-TTTCAGACTTTAAGAAATCAT---------ACCCATTAAATTCTCACTCACACAGGG-A-TTGTCCAC-AGG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12181 80 + 18451090 TAAGATGACATTTTCAGACTTCAAAAAATCATATCCATCACATCCATTAGATGCTCACTCACAAATGG-A-GTGTCCAC-GGG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841656 70 - 32117204 TAAGATGACATTTTCACATTTTAAGAAATCAC---------A--TGTTTAAAGCTCACTTGCACATGGCA-GTGTCCTT-GAG i otoGar3.GL873532 I 1 I 1 s canFam3.chr25 42515708 72 + 51628933 TAAGATGATAGTTTTACATTTTCAGAAATTAT---------ACATATTAGGTGCTCACTCCCACATGG-AAGTGTCCAT-GGA i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1072577 55 - 2169676 TAAGATGATATTTTTATACTTTCATAAATTAT---------ACATATTAGGTGCTCACTCCCAC------------------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880259 72 + 84719076 TAAGATGATATTTTCACACGTTAAGAAATCAT---------ACATGTTGAGTGCTCAGTCCCACATGG-AAGTGTCCGT-GGC i equCab2.chr6 C 0 I 1 e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312822 166 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125606 73 + 176633 I a score=1202.000000 s mm10.chr1_GL456221_random 136792 1 + 206961 A s rn5.chr9 92381089 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167921 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155485 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533520 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490218 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712177 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674154 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082919 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762962 1 + 158406734 G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12261 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 125679 1 + 176633 G i micMur1.scaffold_3075 I 73 I 243 s otoGar3.GL873532 28841727 1 - 32117204 A i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42515781 1 + 51628933 A i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1072632 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880332 1 + 84719076 A i equCab2.chr6 I 1 C 0 e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312822 166 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=567403.000000 s mm10.chr1_GL456221_random 136793 118 + 206961 TGCCCAGAGAACCAGAAAGAAG--TCCATGAACTTCCGTCCATAGATGGAAACTCTTGTGTAGTTTTATTCTGGTCAGACACAAATGGGAAGAGGATATAAACATCTGTCTTCACATCC----------C s rn5.chr9 92381090 120 + 121549591 TGCGCAGAGAACCAGAAAAAAAATACTATGAACTTCCATCCACAGATGGAAACTATTGTGTAGTTTCATTCTGGTCAGACACAAATGGGAAGAGGCTATGGGCCACTGTCTTCGCGTCC----------C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4167922 114 - 10418462 TACCCAAAGAACCAAAGATAAG--TGCAGGAAATTCCATCCAGAGGTGGGAAATA--AAATATTTTACTTATAACTAGAGATA-----------GACCTCAGCCTCTACCTCTATACCCTCTCT-CCTGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155486 127 + 243199373 TGCCCAAAGAACCAAAGAGAAG---GCAGGAACATCAATTCACAGATGAAAAATGTCACGTATTTTACTTTGAATCAGACAGAAAAATGAAGAGGCCCTCAACCTCGACCTTCATATTCTCTCTCCCTTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533521 127 + 247518478 TGCCCAAAGAACCAAAGAGAAG---GCAGGAACATCAATTCACAGATGGAAAATGTCACGTATTTTACTTTGAATCAGACAGAAAAATGAAGAGGCCCTCAACCTCGACCTTCATATTCTCTCTCCCTTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490219 127 + 131632457 TGCCCAAAGAACCAAAGAGAAG---GCAGGAACATCAATTCACAGATGGAAAATGTCATGTATTTTACTTTGAATCAGACAGAAAAATGAAGAGGCCCTCAACCTCAACCTTCATATTCTCCCTCCCTTC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712178 127 + 135000294 TACCCAAAGAACAAAAGAGAAG---GCAGGAACGTCAATTCACAGATGGAAAATGTCAGGTATTTTACTTTGAATCAGACAGAAAAGGGAAGAGGCCCTCAACCTCAAGCTTCATATTCTCTCTCCCTTC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674155 127 + 6458163 TGCCCAAAGAACCAAAGAGAAG---GCAGGAACATCGATTCACAGATGGAAAATGTCATGTATTTTACTTTGAATCAGACAGAAAAATGAGGAGGCCCTCAACCTCGACCTTCATATTCTCTCTCCCTTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94082920 128 + 106825570 TGCCCAAAGAACCAAAGAGAAG--TGCAGGAACGTCAATTCGCAGATGAAAAATGTCACATATTTTACTTTGAATCAGACAGAAAAATGAAGAGGCCTTCAACCTCAACTTTCATATTCTCTCTCCGTTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146762963 128 + 158406734 TGCCCAAAAAACCAAAGAGAAG--TGCAGGAACATCAATTCACAGATGGAAAATGTCACATATTTTACCTTGAGTCAGACAGAAAAGGGAAGAGGCCCTCAGCCTCAACCTTCATATTCTTTCTTCCTTC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12262 128 + 18451090 TGACCAAAGAACCAAAGAGAAG--TGCAGGAACATCAATTCACAGATGGAAAATGTTACGTATTTTACCTTGAGTCAGACAGAAAAGCAAAGAGGCCCTCAGCCTCAACCTTCATATTCTTTCTTCCTTC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841728 119 - 32117204 TATCCAAA----CAAAGAGAAG--TCTAGGAACCCCAATTCACAGATGGAAAACATCGCACACTTTACTGTGAATCAGAC----AAGGGAAGAGGTCCTCAGTCTCTTCTTTC-TATCCCCTCTCCCTTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515782 82 + 51628933 TGCTCAAAGAACCAAAGAAAAG------------------------------------------------TGAATCAGAAATAAAAGGGAAGAGGCCCTCAGCCTCCACCTTCATATCCTCTTTTCTGTA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072633 82 - 2169676 TGCCCAAAGAACCAAAGAGAAG------------------------------------------------TGAATCAGAAATAAAAGGGAAGAGGCCCTCAGCCTCCACCTTCATATCCTCTCTCCCTTC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880333 82 + 84719076 GGCTCAAACAACCAAAGAGAAG------------------------------------------------TGAACCAGAAATAAAAGGGAAGAGGGCCACAGCCTCCACCTTCATATCCTCTTTCCCTTC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312822 166 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125680 243 + 176633 I a score=7845.000000 s mm10.chr1_GL456221_random 136911 1 + 206961 T s rn5.chr9 92381210 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168036 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155613 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533648 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490346 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712305 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674282 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083048 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763091 1 + 158406734 T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12390 1 + 18451090 T i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841847 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515864 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072715 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880415 1 + 84719076 T i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26312988 1 + 30916457 T i myoLuc2.GL429770 I 166 I 1282 e pteVam1.scaffold_10686 23316 342 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125680 243 + 176633 I a score=13999.000000 s mm10.chr1_GL456221_random 136912 5 + 206961 GTGT------C s rn5.chr9 92381211 5 + 121549591 GGGT------C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168037 5 - 10418462 GGAT------C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155614 5 + 243199373 GGAG------T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533649 5 + 247518478 GGAG------T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490347 5 + 131632457 GGAG------T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712306 5 + 135000294 GGAG------T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674283 5 + 6458163 GGAG------T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083049 5 + 106825570 GGAG------T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763092 5 + 158406734 GGAG------T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12391 5 + 18451090 GGAG------T i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841848 5 - 32117204 GGAT------C i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515865 5 + 51628933 AGAT------G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072716 5 - 2169676 GGAT------T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880416 11 + 84719076 GGATCAGCAGC i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125680 243 + 176633 I a score=-4599.000000 s mm10.chr1_GL456221_random 136917 2 + 206961 AT- s rn5.chr9 92381216 2 + 121549591 AT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168042 2 - 10418462 AT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155619 2 + 243199373 GC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533654 2 + 247518478 GC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490352 2 + 131632457 GC- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712311 2 + 135000294 GC- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674288 2 + 6458163 GC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083054 2 + 106825570 GC- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763097 2 + 158406734 CC- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12396 2 + 18451090 GC- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841853 2 - 32117204 AT- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515870 2 + 51628933 AT- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072721 2 - 2169676 AT- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880427 2 + 84719076 AG- i equCab2.chr6 C 0 C 0 s proCap1.scaffold_27553 8563 2 + 24860 -CT i proCap1.scaffold_27553 N 0 I 22 e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125680 243 + 176633 I a score=31125.000000 s mm10.chr1_GL456221_random 136919 8 + 206961 TAGAACCA s rn5.chr9 92381218 8 + 121549591 TAGTCCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168044 7 - 10418462 CATCAC-A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155621 8 + 243199373 CATCACca i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533656 8 + 247518478 CATCACca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490354 8 + 131632457 CATCACca i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712313 8 + 135000294 TGTCACca i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674290 8 + 6458163 CATCACCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083056 8 + 106825570 CATCACGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763099 8 + 158406734 TGTCACca i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12398 8 + 18451090 TGTTACCA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841855 8 - 32117204 TGTTACca i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515872 8 + 51628933 CACCACCT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072723 8 - 2169676 CACCACca i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880429 8 + 84719076 CAGCACCA i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8565 22 + 24860 I e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125680 243 + 176633 I a score=5658.000000 s mm10.chr1_GL456221_random 136927 1 + 206961 G s rn5.chr9 92381226 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168051 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155629 1 + 243199373 g i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533664 1 + 247518478 g i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490362 1 + 131632457 g i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712321 1 + 135000294 a i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674298 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083064 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763107 1 + 158406734 a i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12406 1 + 18451090 A i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841863 1 - 32117204 a i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515880 1 + 51628933 g i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072731 1 - 2169676 g i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880437 1 + 84719076 G i equCab2.chr6 C 0 C 0 s proCap1.scaffold_27553 8587 1 + 24860 G i proCap1.scaffold_27553 I 22 I 153 e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125680 243 + 176633 I a score=390977.000000 s mm10.chr1_GL456221_random 136928 93 + 206961 GGCATGGC---AGTCATGGGAAG----------------------------------------------------GCCATCACAGGACTGA-----GAATCAGAGAACCCAA----TTTCCAGCCTCAG------------------------------------------------ATTGGCCAAACAAGATGT--------------TCTCATTCTA s rn5.chr9 92381227 96 + 121549591 GGCATGACACTAGTCATGGTGAG----------------------------------------------------ACCATCACAGAACTGA-----AAATCAGAGAAGCCAA----GTTCCAGCCTCGG------------------------------------------------ATTTGCCAAGTGAGGTGT--------------TCTTATTCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168052 160 - 10418462 GGCAGGATGCTTGACCTGGTGAG-------------------------------------------------------ATCACAGGATTTAGGTTTGGATCAGGAAACCTGA----GTTCCTGttccagcagttctggggatcgaacccagggccttgtgcatgcaaggctgaagcactctaccaactgagctatatccgcagcccCTGTTTCACTCTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155630 96 + 243199373 ggcagggtgcttggtatagggag----------------------------------------------------atgatcacagaatttg-----ggatcagaaagcctga----gttccagcctttg------------------------------------------------ctgtttcaggagtgactg--------------ttccattctg i hg19.chr2 C 0 I 2 s panTro4.chr2B 235533665 96 + 247518478 ggcagggtgcttggtatggggag----------------------------------------------------atgatcacagaatttg-----ggatcagaaagcctga----gttccagcctttg------------------------------------------------ctgttccaggagtgactg--------------ttccattctg i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119490363 100 + 131632457 ggcagggtgcttggtataggaag----------------------------------------------------atgatcacagaatttg-----ggatcagaaagcctgagttcgttccagcctttg------------------------------------------------ctgtaccaggagtgactg--------------ttccattctg i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122712322 99 + 135000294 ggcagggtgcttggcttagggtg-------------------------------------------------ataatgatcacaggtttta-----acattaggaagcctga----gttccagccttgg------------------------------------------------ctgtgccaggaatgactg--------------ttccattctg i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3674299 96 + 6458163 GGCAGGGTGCTtggtatagggag----------------------------------------------------atgatcacagaatttg-----ggatcaggaagcttga----gttccagccttgg------------------------------------------------ctgtgccaggagtgactg--------------ttccattctg i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94083065 96 + 106825570 GGCAGGGTGCTtggtataggaag----------------------------------------------------atgatcacagaatttg-----ggatcacgaagcctga----gttccagccttgg------------------------------------------------ctgtgccaggagtgactg--------------ttccattctg i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146763108 96 + 158406734 ggcagggtgcatgacttagggtg----------------------------------------------------acaatctcaggtttta-----aaattaggaagcctga----gttccagcctcgg------------------------------------------------ctgtgccaggagtgactg--------------ttccattctg i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 12407 148 + 18451090 AGCAGGGTGCTTGACTTAAGTTTTAAAATTAGGTTTTAAAACCTAGTTTTAGTTTTAAAACTTAGGTTTTAAAACCCAATCTCAggtttta-----aaattaggaagcctga----gttccagccttgg------------------------------------------------ctgtgccaggagtgactg--------------ttccattctg i saiBol1.JH378144 C 0 I 2 s otoGar3.GL873532 28841864 95 - 32117204 gacagtgtgcctgacatgatgag----------------------------------------------------aagatcacagaattta-----gaattaggaaacatga----gttccaaactcaa------------------------------------------------ttatgtcaagagtgactt--------------tttc-ttctc i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42515881 96 + 51628933 ggtagagtgctggaggtggtgag----------------------------------------------------aagaccacagaattta-----gaattggagagactga----gccccagctgcaa------------------------------------------------ctctgccaagagggactg--------------attcatctga i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1072732 96 - 2169676 ggtgggctgctggatgtggtgag----------------------------------------------------aagaccatagaattta-----gaatcagagagcctga----accccacccacag------------------------------------------------ttctgccaagagggactg--------------attcatctga i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17880438 96 + 84719076 Ggaagggtgcttcatgtagtgag----------------------------------------------------aagatcacagaactta-----gaatcagaaagcctga----gtcccagcctcag------------------------------------------------ctatgccaagggtgacaa--------------attcatctga i equCab2.chr6 C 0 I 1 e proCap1.scaffold_27553 8588 153 + 24860 I e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125680 243 + 176633 I a score=7710.000000 s mm10.chr1_GL456221_random 137021 1 + 206961 T s rn5.chr9 92381323 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168212 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155728 1 + 243199373 t i hg19.chr2 I 2 C 0 s panTro4.chr2B 235533763 1 + 247518478 t i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119490465 1 + 131632457 t i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122712423 1 + 135000294 t i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3674397 1 + 6458163 t i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94083163 1 + 106825570 t i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146763206 1 + 158406734 t i calJac3.chr6 I 2 C 0 s saiBol1.JH378144 12557 1 + 18451090 t i saiBol1.JH378144 I 2 C 0 s micMur1.scaffold_3075 125923 1 + 176633 t i micMur1.scaffold_3075 I 243 I 12 s otoGar3.GL873532 28841961 1 - 32117204 t i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42515978 1 + 51628933 t i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1072829 1 - 2169676 t i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17880535 1 + 84719076 t i equCab2.chr6 I 1 C 0 e proCap1.scaffold_27553 8588 153 + 24860 I e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=6559.000000 s mm10.chr1_GL456221_random 137022 1 + 206961 A s rn5.chr9 92381324 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168213 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155729 1 + 243199373 a i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533764 1 + 247518478 a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490466 1 + 131632457 a i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712424 1 + 135000294 a i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674398 1 + 6458163 a i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083164 1 + 106825570 a i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763207 1 + 158406734 a i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12558 1 + 18451090 a i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841962 1 - 32117204 a i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515979 1 + 51628933 a i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072830 1 - 2169676 a i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880536 1 + 84719076 a i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8588 153 + 24860 I e pteVam1.scaffold_10686 23316 342 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125924 12 + 176633 I a score=10035.000000 s mm10.chr1_GL456221_random 137023 1 + 206961 G s rn5.chr9 92381325 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168214 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155730 1 + 243199373 g i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533765 1 + 247518478 g i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490467 1 + 131632457 g i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712425 1 + 135000294 g i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674399 1 + 6458163 g i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083165 1 + 106825570 g i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763208 1 + 158406734 g i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12559 1 + 18451090 g i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841963 1 - 32117204 g i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515980 1 + 51628933 g i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072831 1 - 2169676 g i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880537 1 + 84719076 g i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_10686 23658 1 + 49512 a i pteVam1.scaffold_10686 I 342 I 362 e proCap1.scaffold_27553 8588 153 + 24860 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125924 12 + 176633 I a score=33310.000000 s mm10.chr1_GL456221_random 137024 9 + 206961 AG------AGGGGGG s rn5.chr9 92381326 15 + 121549591 AGGCAGGTGGGGGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168215 12 - 10418462 AG---AGAAGGAGGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155731 9 + 243199373 ag------aagggaa i hg19.chr2 C 0 I 1 s panTro4.chr2B 235533766 9 + 247518478 ag------aagggaa i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119490468 9 + 131632457 ag------aagggaa i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122712426 9 + 135000294 ag------aagggga i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3674400 9 + 6458163 ag------aagggaa i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94083166 9 + 106825570 ag------aagggaa i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146763209 10 + 158406734 ag-----aaaagggg i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 12560 9 + 18451090 ag------aaggggg i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28841964 9 - 32117204 ag------aggggga i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42515981 9 + 51628933 ag------agtggga i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1072832 9 - 2169676 ac------actggga i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17880538 9 + 84719076 ag------aatggga i equCab2.chr6 C 0 I 1 e proCap1.scaffold_27553 8588 153 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125924 12 + 176633 I a score=12000.000000 s mm10.chr1_GL456221_random 137033 1 + 206961 C s rn5.chr9 92381341 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168227 1 - 10418462 c i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155741 1 + 243199373 c i hg19.chr2 I 1 C 0 s panTro4.chr2B 235533776 1 + 247518478 c i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119490478 1 + 131632457 c i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122712436 1 + 135000294 c i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3674410 1 + 6458163 c i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94083176 1 + 106825570 c i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146763220 1 + 158406734 c i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 12570 1 + 18451090 c i saiBol1.JH378144 I 1 C 0 s micMur1.scaffold_3075 125936 1 + 176633 c i micMur1.scaffold_3075 I 12 I 339 s otoGar3.GL873532 28841974 1 - 32117204 c i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42515991 1 + 51628933 c i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1072842 1 - 2169676 c i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17880548 1 + 84719076 c i equCab2.chr6 I 1 C 0 e proCap1.scaffold_27553 8588 153 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=304491.000000 s mm10.chr1_GL456221_random 137034 54 + 206961 TTTCTGAGCCTGGATTTTTTCATTTTGAAATAGAGGACAATAATTT--AAAGCCTG s rn5.chr9 92381342 54 + 121549591 TTTCTGAGGCTGAATTTCCTATTTTAAAAATAGAGGACAACAATTT--AAAGCCTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168228 55 - 10418462 ttgctgagcctgaaattttttatctacgaa-aggggaaaataattttaaaaacctg i speTri2.JH393335 C 0 I 1 s hg19.chr2 231155742 53 + 243199373 tttctgaacctgaaatgtctcatccaagag-agggaacaataatga--aaaacctg i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533777 53 + 247518478 tttctgaacctgaaatgtctcatccaagag-agggaacaataatga--aaaacctg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490479 53 + 131632457 tttctgaacctgaaatttctcatccaagag-agggaacagtaatga--aaaacctg i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712437 53 + 135000294 tttctgaatgggaaatttctcatccaagag-agggaaaaataatta--aaaaccta i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674411 53 + 6458163 tttctgaacctgaaatttctcatccaagag-agggaacaataatga--aaaacctg i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083177 53 + 106825570 tttctgaacctgaaatttctcatccaagag-agggaacaataataa--gaaacctg i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763221 53 + 158406734 tttctgaacatgaaatttcttatccaagag-agagaaaaacaattg--aacacctg i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12571 53 + 18451090 tttttgaaactgaaatttctcatccaagag-agggaagaataatta--aacacctg i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28841975 53 - 32117204 tttctgagtttgaaatttcttatctgaaaa-aggcaacaataatta--aaaaccgg i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42515992 52 + 51628933 tttctgagcttgaagtttcttatctagaaa-a-aggatgataatta--aaaacctg i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072843 53 - 2169676 tttctgagcttgaagtttctcatctaaaaa-aggggatagtaatta--aaaacctg i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880549 49 + 84719076 tttctgagcttgaaatttctcatttaaaaa-a-gaga---taatta--aaaatcta i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8588 153 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56591 382 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=29470.000000 s mm10.chr1_GL456221_random 137088 5 + 206961 ATCC----------A s rn5.chr9 92381396 5 + 121549591 ATCC----------A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168284 15 - 10418462 atcctagtattgctg i speTri2.JH393335 I 1 C 0 s hg19.chr2 231155795 5 + 243199373 cctc----------a i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533830 5 + 247518478 cctc----------a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490532 5 + 131632457 cctc----------a i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712490 5 + 135000294 cctc----------a i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674464 5 + 6458163 cctc----------a i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083230 5 + 106825570 cctc----------a i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 56973 5 + 66950 cctc----------a i papHam1.scaffold13267 I 382 C 0 s calJac3.chr6 146763274 5 + 158406734 cctc----------a i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12624 5 + 18451090 cctc----------a i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842028 5 - 32117204 cctc----------a i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516044 5 + 51628933 cctc----------a i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072896 5 - 2169676 cctc----------a i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880598 5 + 84719076 cctc----------a i equCab2.chr6 C 0 C 0 s proCap1.scaffold_27553 8741 5 + 24860 ccct----------a i proCap1.scaffold_27553 I 153 I 2163 e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=-17007.000000 s mm10.chr1_GL456221_random 137093 3 + 206961 TGG------------ s rn5.chr9 92381401 3 + 121549591 TGC------------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168299 3 - 10418462 taa------------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155800 3 + 243199373 tga------------ i hg19.chr2 C 0 I 11 s panTro4.chr2B 235533835 3 + 247518478 tga------------ i panTro4.chr2B C 0 I 11 s gorGor3.chr2B 119490537 3 + 131632457 tgg------------ i gorGor3.chr2B C 0 I 11 s ponAbe2.chr2b 122712495 3 + 135000294 tga------------ i ponAbe2.chr2b C 0 I 11 s nomLeu2.GL397366 3674469 3 + 6458163 tga------------ i nomLeu2.GL397366 C 0 I 11 s rheMac3.chr12 94083235 3 + 106825570 tga------------ i rheMac3.chr12 C 0 I 11 s papHam1.scaffold13267 56978 3 + 66950 tga------------ i papHam1.scaffold13267 C 0 I 328 s calJac3.chr6 146763279 3 + 158406734 tga------------ i calJac3.chr6 C 0 I 11 s saiBol1.JH378144 12629 3 + 18451090 tga------------ i saiBol1.JH378144 C 0 I 11 s otoGar3.GL873532 28842033 3 - 32117204 ctg------------ i otoGar3.GL873532 C 0 I 11 s canFam3.chr25 42516049 15 + 51628933 cagttacactgtgag i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072901 15 - 2169676 cagtatagctgtgag i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880603 15 + 84719076 tggggtagctatgag i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=67870.000000 s mm10.chr1_GL456221_random 137096 31 + 206961 GGATTAATGTATATCATTGGTATAGC--------------ATATT s rn5.chr9 92381404 31 + 121549591 GGATAAATGTATATCGTTGGTATAGC--------------ATATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168302 31 - 10418462 gaattaatgtgtagaattgatacaAC--------------ATATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155814 42 + 243199373 gaattaatttgcat-attgatgtaaaata--tgtaaattTACATG i hg19.chr2 I 11 C 0 s panTro4.chr2B 235533849 42 + 247518478 gaattaatttgcat-attgatgtaaaata--tgtaaattTACATG i panTro4.chr2B I 11 C 0 s gorGor3.chr2B 119490551 42 + 131632457 gaattaatttgcat-attgatgtaaaata--tgtaaattTACATG i gorGor3.chr2B I 11 C 0 s ponAbe2.chr2b 122712509 33 + 135000294 gaactaatttacat-attaatgtaaaata--t-----ttta---- i ponAbe2.chr2b I 11 C 0 s nomLeu2.GL397366 3674483 42 + 6458163 gaattaatttacat-attgatgtaaaata--tgtaaattTACATG i nomLeu2.GL397366 I 11 C 0 s rheMac3.chr12 94083249 35 + 106825570 gaattaatttacat-attaacgtaaaata--t-----tttgca-- i rheMac3.chr12 I 11 C 0 s calJac3.chr6 146763293 42 + 158406734 gaactactttacat-attaatgtaaaagA--CATAAATTTACATG i calJac3.chr6 I 11 C 0 s saiBol1.JH378144 12643 30 + 18451090 gaactactttacaa-attaatgtaaa--------------atatt i saiBol1.JH378144 I 11 C 0 s otoGar3.GL873532 28842047 30 - 32117204 aaatctatttatat-attgatgtaaa--------------acatt i otoGar3.GL873532 I 11 C 0 s canFam3.chr25 42516064 29 + 51628933 gaattaatttacttaatctatgtaaaata---------------- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072916 29 - 2169676 gaattaatttacataatcaatgtaaaata---------------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880618 31 + 84719076 aaattaatttacctaattgatgtaaaatgtt-------------- i equCab2.chr6 C 0 I 74064 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212438630 1043 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=2109.000000 s mm10.chr1_GL456221_random 137127 1 + 206961 C s rn5.chr9 92381435 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168333 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155856 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533891 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490593 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3674525 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146763335 1 + 158406734 T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12673 1 + 18451090 t i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842077 1 - 32117204 c i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212439673 1 + 221441202 c i felCat5.chrC1 I 1043 C 0 s canFam3.chr25 42516093 1 + 51628933 c i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1072945 1 - 2169676 c i ailMel1.GL192536.1 C 0 C 0 e ponAbe2.chr2b 122712542 0 + 135000294 C e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e rheMac3.chr12 94083284 0 + 106825570 C e equCab2.chr6 17880649 74064 + 84719076 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=10435.000000 s mm10.chr1_GL456221_random 137128 9 + 206961 TTCAATAAT s rn5.chr9 92381436 9 + 121549591 TTCAATACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168334 9 - 10418462 TATAACCAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155857 9 + 243199373 TTTTACTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533892 9 + 247518478 TTTTACTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490594 9 + 131632457 TTTTACTGT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712542 7 + 135000294 --tgattga i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674526 9 + 6458163 TTTTACTGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083284 5 + 106825570 ----aTTGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763336 9 + 158406734 TTTTATTGT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12674 9 + 18451090 tgtgattga i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842078 9 - 32117204 tgttattgt i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212439674 9 + 221441202 ttaaacagc i felCat5.chrC1 C 0 I 1 s canFam3.chr25 42516094 9 + 51628933 ttCaacagt i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1072946 9 - 2169676 ttCaacagc i ailMel1.GL192536.1 C 0 I 200 s equCab2.chr6 17954713 4 + 84719076 ttta----- i equCab2.chr6 I 74064 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=6006.000000 s mm10.chr1_GL456221_random 137137 1 + 206961 A s rn5.chr9 92381445 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168343 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155866 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533901 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490603 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712549 1 + 135000294 a i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674535 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083289 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763345 1 + 158406734 A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12683 1 + 18451090 a i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842087 1 - 32117204 a i otoGar3.GL873532 C 0 C 0 e canFam3.chr25 42516103 1 + 51628933 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 19608 804 - 63237 I e equCab2.chr6 17954717 0 + 84719076 C e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439683 1 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=-13454.000000 s mm10.chr1_GL456221_random 137138 4 + 206961 -TGCC s rn5.chr9 92381446 4 + 121549591 -TGCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168344 4 - 10418462 -GTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155867 4 + 243199373 -AATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533902 4 + 247518478 -AATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490604 4 + 131632457 -AATT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712550 4 + 135000294 -aatt i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674536 4 + 6458163 -AATT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083290 4 + 106825570 -AATT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763346 4 + 158406734 -AATT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12684 4 + 18451090 -aagt i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842088 4 - 32117204 -aaTT i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 20412 4 - 63237 cacc- i turTru2.JH486691 I 804 C 0 s felCat5.chrC1 212439684 4 + 221441202 tgac- i felCat5.chrC1 I 1 C 0 s canFam3.chr25 42516104 4 + 51628933 tagc- i canFam3.chr25 I 1 I 151 s equCab2.chr6 17954717 3 + 84719076 -aat- i equCab2.chr6 C 0 I 1 e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=3071.000000 s mm10.chr1_GL456221_random 137142 2 + 206961 AT- s rn5.chr9 92381450 2 + 121549591 AT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168348 2 - 10418462 CT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155871 2 + 243199373 AT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533906 2 + 247518478 AT- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490608 2 + 131632457 AT- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712554 2 + 135000294 at- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674540 2 + 6458163 AT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083294 2 + 106825570 AT- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763350 2 + 158406734 AT- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12688 2 + 18451090 AT- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842092 2 - 32117204 CT- i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 20416 3 - 63237 act i turTru2.JH486691 C 0 I 183 e canFam3.chr25 42516108 151 + 51628933 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e equCab2.chr6 17954720 1 + 84719076 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439688 0 + 221441202 C e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=67282.000000 s mm10.chr1_GL456221_random 137144 50 + 206961 ------AAAA--GTGTGCAAGAAATAAAGCCTCAGTATGATGGTCTTCATCTCAGAGG s rn5.chr9 92381452 50 + 121549591 ------AAAG--ATTTATATGAAATAAAGCCTCAGTGTGGTGGTCTTCATCTCAGATC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168350 46 - 10418462 ------AAGG--CCTTTCAA-AAATAG---TTCATGATGATGGACTTCATCTCAGACC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231155873 47 + 243199373 ------AAAA--CTTTGCC--AAAAAATGTCT-ATTAGAATGGCCATCATCTCAGACC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533908 48 + 247518478 ------AAAA--CTTTGCCA-AAAAAATGTCT-ATTAGAATGGCCATCATCTCAGACC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490610 48 + 131632457 ------AAAA--CTTTGCCA-AAAAAATGTCT-ATTAGAATGGCCATCATCTCAGACC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712556 44 + 135000294 ------aaaa--ctgt-----CAAAAATGTCT-ATCAGAATGGCCTTCATCTCAGACC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674542 48 + 6458163 ------AAAA--CTTGGCCA-AAAAAATGTCT-ATTAGAATGGCCGTCATCTCAGACC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083296 46 + 106825570 ------AAAA--CTTTGTC---AAAATCATCT-ATCAGAATGGCCTTCATCTCAGACC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763352 48 + 158406734 ------AAGAAACTTTGCA---AAAAATGTCT-ATTAGAATGGCTGTCATCTCAGACT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12690 45 + 18451090 ------AAAA---CTTGCT---AATAAAGTCT-ATCAGAATGACCTTCATCTCAGACC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842094 40 - 32117204 ------AAAA--CTTTGCA---AAATATGTCT-ATCATGATG------AACTCATCCC i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212439688 40 + 221441202 tgagatacaa--tcccata--tagtacagttt-cccacccagagt------------- i felCat5.chrC1 C 0 I 310 s equCab2.chr6 17954721 35 + 84719076 ----ataaag--cttcaca---aaAATTGTCT-GTTATGATGGAT------------- i equCab2.chr6 I 1 I 13 e canFam3.chr25 42516108 151 + 51628933 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 20419 183 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=23773.000000 s mm10.chr1_GL456221_random 137194 6 + 206961 TCTCTT s rn5.chr9 92381502 6 + 121549591 TCTCTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168396 6 - 10418462 TCTCCt i speTri2.JH393335 C 0 I 244 s hg19.chr2 231155920 6 + 243199373 AATCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533956 6 + 247518478 AATCTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490658 6 + 131632457 AATCTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712600 6 + 135000294 TCTCTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674590 6 + 6458163 AATCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083342 6 + 106825570 TCTCTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763400 6 + 158406734 ACTCAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12735 6 + 18451090 TCTCTT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842134 6 - 32117204 TCTCTT i otoGar3.GL873532 C 0 C 0 s equCab2.chr6 17954769 6 + 84719076 TCTCTT i equCab2.chr6 I 13 C 0 e canFam3.chr25 42516108 151 + 51628933 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 20419 183 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=91809.000000 s mm10.chr1_GL456221_random 137200 28 + 206961 AATAGGAGGCTGTGGATGACAGTTAACA s rn5.chr9 92381508 28 + 121549591 AATAGGAGATTGTGGATGACAGTTAACA i rn5.chr9 C 0 C 0 s hg19.chr2 231155926 28 + 243199373 AATATGACTCTTTGGATGTCAATTAACA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533962 28 + 247518478 AACATGACTCTTTGGATGTCAATTAACA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490664 28 + 131632457 AATATGACTCTTTGGATGTCAATTAACA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712606 28 + 135000294 AACTTGGCTTTTTGAGCACCAATTAATA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674596 28 + 6458163 AATATGACTCTTTGGACATCAATTAACA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083348 28 + 106825570 AACTTGGCTCTTTGAGCACCAATTAATA i rheMac3.chr12 C 0 I 219 s calJac3.chr6 146763406 28 + 158406734 AATATGACTCTTTGGATGCCAATTAATA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12741 28 + 18451090 AACTTGGCTCTTTGAGCACCAATTAATA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842140 27 - 32117204 AATATGGTTCTTTGGGTACCAATTATA- i otoGar3.GL873532 C 0 C 0 s equCab2.chr6 17954775 28 + 84719076 AATATGGGTTTATGGACACCAATTAATC i equCab2.chr6 C 0 C 0 e canFam3.chr25 42516108 151 + 51628933 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20419 183 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=271732.000000 s mm10.chr1_GL456221_random 137228 68 + 206961 GAAAAGA---TTACATTGTCTCTA--TTTTTAAGAGTTTTAGTGAGTTATAATTCATACACTGTATGATTCAG s rn5.chr9 92381536 69 + 121549591 GAAAGGA---TTACATTGTCTCTA-TTTTTTAATGGTTTTAGTGAGTTATGATTCATACACTGTACAATCCAG i rn5.chr9 C 0 C 0 s hg19.chr2 231155954 69 + 243199373 GAAATGT---TTGCATTGTGACTA-TTTCTAaacagctttactgagatatagttcacatatcatacaactcac i hg19.chr2 C 0 C 0 s panTro4.chr2B 235533990 69 + 247518478 GAAATGT---TTGCATTGTGACTA-TTTCTAaacagctttactgagatatagttcacatatcacacaactcac i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490692 69 + 131632457 GAAATGT---TTGCATTGTGACTA-TTTCTAaacagctttactgagatatagttcacatatcatacaactcac i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712634 67 + 135000294 TAAATGT---TTTCATTGTGAC---ttttttaatagcttaactgaaatacagttcatgtatcatgtaattcac i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674624 69 + 6458163 GAAATGT---TTGCATTGTGACTA-TTTCTAaacagctttactaagatatagttcacatatcatacaactcac i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083595 72 + 106825570 AAAATGTCTATTGCATTGTGACTA-TTTCTAaacagctttactgagatatagttcacatatcatacaactcac i rheMac3.chr12 I 219 C 0 s calJac3.chr6 146763434 69 + 158406734 GAAATGT---TTGCATTGTGACTA-GTTCTAaacagctttactgagatatagttcacatatcatacaactcac i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12769 69 + 18451090 CAAAAGT---TTTCACTGTGATTA-tttttaaacagctttactgaaatatagttcacatatcatgcaactcac i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842167 70 - 32117204 TAAATGT---TTGCATTGTGACTATtttttaaacagctttaccaaaatataattcacatgtcatacaatttac i otoGar3.GL873532 C 0 C 0 s equCab2.chr6 17954803 67 + 84719076 -AAATGT---TTGCATCATGACt--tttttaagcagctttagtgagatataattcatataccatacaagtcat i equCab2.chr6 C 0 C 0 e canFam3.chr25 42516108 151 + 51628933 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20419 183 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=41514.000000 s mm10.chr1_GL456221_random 137296 18 + 206961 CAATT-AGAGTCT-GTAGAT------------- s rn5.chr9 92381605 19 + 121549591 CAATT-AGAGTCTAATAGAT------------- i rn5.chr9 C 0 C 0 s hg19.chr2 231156023 18 + 243199373 cactt-agagtgt-acaaat------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534059 18 + 247518478 cactt-agagtgt-acaaat------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490761 18 + 131632457 cactt-agagtgt-acaaat------------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712701 18 + 135000294 cactt-agagtat-accaat------------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674693 19 + 6458163 cacttaagagtgt-acaaat------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083667 18 + 106825570 cactt-agagtgt-acagat------------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763503 18 + 158406734 cactt-agagtgt-acaaat------------- i calJac3.chr6 C 0 I 164 s saiBol1.JH378144 12838 18 + 18451090 cactt-agagtat-gccaat------------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842237 18 - 32117204 tactt-agagggt-acaaat------------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516259 1 + 51628933 --------------------------------t i canFam3.chr25 I 151 C 0 s equCab2.chr6 17954870 31 + 84719076 cactt-agagcgt-acgattcaatgttgggtgt i equCab2.chr6 C 0 C 0 e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20419 183 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=-47624.000000 s mm10.chr1_GL456221_random 137314 14 + 206961 AAATG-----GGAT--T-TT---CT-- s rn5.chr9 92381624 14 + 121549591 GCGTG-----GAAT--T-TT---TT-- i rn5.chr9 C 0 C 0 s hg19.chr2 231156041 7 + 243199373 ----------caac--t-tt------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534077 7 + 247518478 ----------caac--t-tt------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490779 7 + 131632457 ----------caac--t-tt------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712719 9 + 135000294 ----------caatgac-tt------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674712 8 + 6458163 ----------caac--tatt------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083685 8 + 106825570 ----------caac--tatt------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763685 14 + 158406734 agat------gggg--t-tttca---- i calJac3.chr6 I 164 I 110 s saiBol1.JH378144 12856 14 + 18451090 caat------gaat--t-ttttt---- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842255 14 - 32117204 cagtgg----ggat--tgtt------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516260 13 + 51628933 -----atttggagt--c-tg-----t- i canFam3.chr25 C 0 C 0 s equCab2.chr6 17954901 14 + 84719076 -----gtttgggat--t-tt-----tt i equCab2.chr6 C 0 C 0 e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20419 183 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=68487.000000 s mm10.chr1_GL456221_random 137328 27 + 206961 TTTTTGGAACAT---CTGAA----ACAATTACCA s rn5.chr9 92381638 23 + 121549591 TTGTT----CAT---CAGAA----ACAATTACCA i rn5.chr9 C 0 C 0 s hg19.chr2 231156048 33 + 243199373 -tttttgtatagtcacagaattgtacagccatca i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534084 33 + 247518478 -tttttgtatagtcacagaattgtacagccatca i panTro4.chr2B C 0 I 23 s gorGor3.chr2B 119490786 33 + 131632457 -tttttgtatattcacagaattgtacagccatca i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712728 33 + 135000294 -ttttcatattttcacaggattgtacagccatta i ponAbe2.chr2b C 0 I 23 s nomLeu2.GL397366 3674720 33 + 6458163 -tttttgtatattcacagacttgtacagccatca i nomLeu2.GL397366 C 0 I 23 s rheMac3.chr12 94083693 33 + 106825570 -tttttgtatattcacagaattgtgcagccatca i rheMac3.chr12 C 0 I 23 s calJac3.chr6 146763809 34 + 158406734 ttttttgtatatccacagaattgtacagtcatca i calJac3.chr6 I 110 C 0 s saiBol1.JH378144 12870 29 + 18451090 -----tgtattttcacaggattgtacagcaatta i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842269 30 - 32117204 ----ttgtatattcatggaactgtacaaccatta i otoGar3.GL873532 C 0 I 3 s canFam3.chr25 42516273 11 + 51628933 -------agcgttcccag---------------- i canFam3.chr25 C 0 C 0 s equCab2.chr6 17954915 29 + 84719076 -----tgtatattcacaagattatacaaccatca i equCab2.chr6 C 0 C 0 e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20419 183 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 125937 339 + 176633 I a score=5634.000000 s mm10.chr1_GL456221_random 137355 1 + 206961 T s rn5.chr9 92381661 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231156081 1 + 243199373 t i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534140 1 + 247518478 t i panTro4.chr2B I 23 C 0 s gorGor3.chr2B 119490819 1 + 131632457 t i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712784 1 + 135000294 t i ponAbe2.chr2b I 23 C 0 s nomLeu2.GL397366 3674776 1 + 6458163 t i nomLeu2.GL397366 I 23 C 0 s rheMac3.chr12 94083749 1 + 106825570 t i rheMac3.chr12 I 23 C 0 s calJac3.chr6 146763843 1 + 158406734 t i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12899 1 + 18451090 t i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 126276 1 + 176633 t i micMur1.scaffold_3075 I 339 I 233 s otoGar3.GL873532 28842302 1 - 32117204 c i otoGar3.GL873532 I 3 C 0 s equCab2.chr6 17954944 1 + 84719076 t i equCab2.chr6 C 0 C 0 e canFam3.chr25 42516284 0 + 51628933 C e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20419 183 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=-820.000000 s mm10.chr1_GL456221_random 137356 1 + 206961 -G s rn5.chr9 92381662 1 + 121549591 -G i rn5.chr9 C 0 C 0 s equCab2.chr6 17954945 1 + 84719076 t- i equCab2.chr6 C 0 T 74127 e saiBol1.JH378144 12900 0 + 18451090 C e ponAbe2.chr2b 122712785 0 + 135000294 C e otoGar3.GL873532 28842303 0 - 32117204 C e canFam3.chr25 42516284 0 + 51628933 C e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20419 183 - 63237 I e rheMac3.chr12 94083750 0 + 106825570 C e nomLeu2.GL397366 3674777 0 + 6458163 C e gorGor3.chr2B 119490820 0 + 131632457 C e panTro4.chr2B 235534141 0 + 247518478 C e hg19.chr2 231156082 0 + 243199373 C e calJac3.chr6 146763844 0 + 158406734 C e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=-14217.000000 s mm10.chr1_GL456221_random 137357 5 + 206961 --AGAAT s rn5.chr9 92381663 5 + 121549591 --AGAAT i rn5.chr9 C 0 C 0 s hg19.chr2 231156082 3 + 243199373 ----tat i hg19.chr2 C 0 I 54 s panTro4.chr2B 235534141 3 + 247518478 ----tgt i panTro4.chr2B C 0 I 30 s gorGor3.chr2B 119490820 3 + 131632457 ----tat i gorGor3.chr2B C 0 I 54 s ponAbe2.chr2b 122712785 3 + 135000294 ----tgt i ponAbe2.chr2b C 0 I 76 s nomLeu2.GL397366 3674777 3 + 6458163 ----tgt i nomLeu2.GL397366 C 0 I 31 s rheMac3.chr12 94083750 3 + 106825570 ----tgt i rheMac3.chr12 C 0 I 30 s calJac3.chr6 146763844 3 + 158406734 ----tat i calJac3.chr6 C 0 I 19 s saiBol1.JH378144 12900 3 + 18451090 ----tat i saiBol1.JH378144 C 0 I 19 s otoGar3.GL873532 28842303 5 - 32117204 --aatgt i otoGar3.GL873532 C 0 I 9 s canFam3.chr25 42516284 1 + 51628933 ----t-- i canFam3.chr25 C 0 C 0 s equCab2.chr6 17880819 5 + 84719076 gcagt-- i equCab2.chr6 T 74127 C 0 e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20419 183 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=-1780.000000 s mm10.chr1_GL456221_random 137362 1 + 206961 -A s rn5.chr9 92381668 1 + 121549591 -A i rn5.chr9 C 0 C 0 s canFam3.chr25 42516285 1 + 51628933 t- i canFam3.chr25 C 0 C 0 s equCab2.chr6 17880824 1 + 84719076 c- i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 12903 19 + 18451090 I e ponAbe2.chr2b 122712788 76 + 135000294 I e otoGar3.GL873532 28842308 9 - 32117204 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20419 183 - 63237 I e rheMac3.chr12 94083753 30 + 106825570 I e nomLeu2.GL397366 3674780 31 + 6458163 I e gorGor3.chr2B 119490823 54 + 131632457 I e panTro4.chr2B 235534144 30 + 247518478 I e hg19.chr2 231156085 54 + 243199373 I e calJac3.chr6 146763847 19 + 158406734 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=1181.000000 s mm10.chr1_GL456221_random 137363 2 + 206961 TA s rn5.chr9 92381669 2 + 121549591 TA i rn5.chr9 C 0 C 0 s rheMac3.chr12 94083783 2 + 106825570 ta i rheMac3.chr12 I 30 C 0 s turTru2.JH486691 20602 2 - 63237 ta i turTru2.JH486691 I 183 C 0 s canFam3.chr25 42516286 2 + 51628933 ca i canFam3.chr25 C 0 C 0 s equCab2.chr6 17880825 2 + 84719076 aa i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 12903 19 + 18451090 I e ponAbe2.chr2b 122712788 76 + 135000294 I e otoGar3.GL873532 28842308 9 - 32117204 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 23659 362 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e nomLeu2.GL397366 3674780 31 + 6458163 I e gorGor3.chr2B 119490823 54 + 131632457 I e panTro4.chr2B 235534144 30 + 247518478 I e hg19.chr2 231156085 54 + 243199373 I e calJac3.chr6 146763847 19 + 158406734 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=-29310.000000 s mm10.chr1_GL456221_random 137365 3 + 206961 -TTT s rn5.chr9 92381671 3 + 121549591 -TTT i rn5.chr9 C 0 C 0 s hg19.chr2 231156139 3 + 243199373 -gca i hg19.chr2 I 54 C 0 s panTro4.chr2B 235534174 3 + 247518478 -gca i panTro4.chr2B I 30 C 0 s gorGor3.chr2B 119490877 3 + 131632457 -gca i gorGor3.chr2B I 54 C 0 s nomLeu2.GL397366 3674811 3 + 6458163 -gca i nomLeu2.GL397366 I 31 C 0 s rheMac3.chr12 94083785 3 + 106825570 -gca i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763866 2 + 158406734 --gt i calJac3.chr6 I 19 C 0 s saiBol1.JH378144 12922 2 + 18451090 --tt i saiBol1.JH378144 I 19 C 0 s otoGar3.GL873532 28842317 3 - 32117204 -aca i otoGar3.GL873532 I 9 C 0 s turTru2.JH486691 20604 3 - 63237 ttt- i turTru2.JH486691 C 0 I 424 s canFam3.chr25 42516288 3 + 51628933 tcc- i canFam3.chr25 C 0 C 0 s equCab2.chr6 17880827 3 + 84719076 tgt- i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_10686 24021 3 + 49512 aga- i pteVam1.scaffold_10686 I 362 C 0 e ponAbe2.chr2b 122712788 76 + 135000294 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 56981 328 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=-24961.000000 s mm10.chr1_GL456221_random 137368 3 + 206961 TC-C- s rn5.chr9 92381674 3 + 121549591 GC-C- i rn5.chr9 C 0 C 0 s hg19.chr2 231156142 3 + 243199373 gt-c- i hg19.chr2 C 0 I 3 s panTro4.chr2B 235534177 3 + 247518478 gt-c- i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119490880 3 + 131632457 gt-c- i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 3674814 3 + 6458163 gt-c- i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94083788 3 + 106825570 gt-c- i rheMac3.chr12 C 0 I 3 s papHam1.scaffold13267 57309 2 + 66950 -t-c- i papHam1.scaffold13267 I 328 I 171 s calJac3.chr6 146763868 3 + 158406734 gt-t- i calJac3.chr6 C 0 I 21 s saiBol1.JH378144 12924 4 + 18451090 gtcc- i saiBol1.JH378144 C 0 I 15 s otoGar3.GL873532 28842320 3 - 32117204 tt-t- i otoGar3.GL873532 C 0 I 20 s canFam3.chr25 42516291 3 + 51628933 --ccg i canFam3.chr25 C 0 C 0 s equCab2.chr6 17880830 3 + 84719076 --cca i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_10686 24024 3 + 49512 --aca i pteVam1.scaffold_10686 C 0 C 0 e ponAbe2.chr2b 122712788 76 + 135000294 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=-145.000000 s mm10.chr1_GL456221_random 137371 4 + 206961 TCCC s rn5.chr9 92381677 4 + 121549591 tccc i rn5.chr9 C 0 C 0 s canFam3.chr25 42516294 4 + 51628933 tgcc i canFam3.chr25 C 0 C 0 s equCab2.chr6 17880833 4 + 84719076 ttcc i equCab2.chr6 C 0 C 0 s pteVam1.scaffold_10686 24027 3 + 49512 ttt- i pteVam1.scaffold_10686 C 0 I 10 e saiBol1.JH378144 12928 15 + 18451090 I e ponAbe2.chr2b 122712788 76 + 135000294 I e otoGar3.GL873532 28842323 20 - 32117204 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e rheMac3.chr12 94083791 3 + 106825570 I e nomLeu2.GL397366 3674817 3 + 6458163 I e gorGor3.chr2B 119490883 3 + 131632457 I e panTro4.chr2B 235534180 3 + 247518478 I e hg19.chr2 231156145 3 + 243199373 I e calJac3.chr6 146763871 21 + 158406734 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57311 171 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=-14606.000000 s mm10.chr1_GL456221_random 137375 10 + 206961 TTTGTCACT-------------------------C s rn5.chr9 92381681 35 + 121549591 tttgtccgtgaatagtcaatgctccttcccactcc i rn5.chr9 C 0 C 0 s hg19.chr2 231156148 9 + 243199373 --------------------------gcctattcc i hg19.chr2 I 3 C 0 s panTro4.chr2B 235534183 9 + 247518478 --------------------------gcccattcc i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119490886 9 + 131632457 --------------------------gcccattcc i gorGor3.chr2B I 3 C 0 s nomLeu2.GL397366 3674820 9 + 6458163 --------------------------gcccattcc i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94083794 9 + 106825570 --------------------------gcccattcc i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146763892 9 + 158406734 --------------------------acccttgcc i calJac3.chr6 I 21 C 0 s saiBol1.JH378144 12943 9 + 18451090 --------------------------acccatgtc i saiBol1.JH378144 I 15 C 0 s otoGar3.GL873532 28842343 9 - 32117204 --------------------------cctcatgtc i otoGar3.GL873532 I 20 C 0 s canFam3.chr25 42516298 5 + 51628933 ------------------------cagcc------ i canFam3.chr25 C 0 C 0 s equCab2.chr6 17880837 10 + 84719076 ------------------------cacctcaccc- i equCab2.chr6 C 0 C 0 e ponAbe2.chr2b 122712788 76 + 135000294 I e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24030 10 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57311 171 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=5069.000000 s mm10.chr1_GL456221_random 137385 2 + 206961 TA s rn5.chr9 92381716 2 + 121549591 aa i rn5.chr9 C 0 C 0 s hg19.chr2 231156157 2 + 243199373 ca i hg19.chr2 C 0 I 1 s panTro4.chr2B 235534192 2 + 247518478 ca i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119490895 2 + 131632457 ca i gorGor3.chr2B C 0 I 1 s nomLeu2.GL397366 3674829 2 + 6458163 ca i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94083803 2 + 106825570 ca i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146763901 2 + 158406734 aa i calJac3.chr6 C 0 I 24 s saiBol1.JH378144 12952 2 + 18451090 aa i saiBol1.JH378144 C 0 I 24 s otoGar3.GL873532 28842352 2 - 32117204 ca i otoGar3.GL873532 C 0 I 4 s equCab2.chr6 17880847 2 + 84719076 ca i equCab2.chr6 C 0 I 10 s pteVam1.scaffold_10686 24040 1 + 49512 -a i pteVam1.scaffold_10686 I 10 I 3289 e ponAbe2.chr2b 122712788 76 + 135000294 I e canFam3.chr25 42516303 0 + 51628933 C e ailMel1.GL192536.1 1072955 200 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57311 171 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=6600.000000 s mm10.chr1_GL456221_random 137387 1 + 206961 C s rn5.chr9 92381718 1 + 121549591 c i rn5.chr9 C 0 C 0 s hg19.chr2 231156160 1 + 243199373 c i hg19.chr2 I 1 C 0 s panTro4.chr2B 235534195 1 + 247518478 c i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119490898 1 + 131632457 c i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122712864 1 + 135000294 c i ponAbe2.chr2b I 76 C 0 s rheMac3.chr12 94083806 1 + 106825570 c i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146763927 1 + 158406734 c i calJac3.chr6 I 24 C 0 s saiBol1.JH378144 12978 1 + 18451090 c i saiBol1.JH378144 I 24 C 0 s canFam3.chr25 42516303 1 + 51628933 c i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073155 1 - 2169676 c i ailMel1.GL192536.1 I 200 C 0 s equCab2.chr6 17880859 1 + 84719076 c i equCab2.chr6 I 10 C 0 e otoGar3.GL873532 28842354 4 - 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e nomLeu2.GL397366 3674831 3 + 6458163 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57311 171 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=506285.000000 s mm10.chr1_GL456221_random 137388 134 + 206961 TAATc-------------------------------aattg---cccaccta-atttctgttctataaatctgcccactgtaccc---atttcatacaaacaacatcctataatatacaccactt-gtgactgcctgctttcatttaccatgttgatttcaaatcacacctgt s rn5.chr9 92381719 116 + 121549591 tagtc-------------------------------aatcg---cctatcta-atttctgttctataaatctgcccattgtatac---atttcatg-aaacaacatcctataatataggccactt-gtgactgcctgctttcacttaccatgatga----------------- i rn5.chr9 C 0 C 0 s hg19.chr2 231156161 133 + 243199373 taagc-------------------------------agcca---ctaatcta-ttttctgctctataagtttgcctactgtaggc-----tttctagaagtggaatcctataatacatgccctttcctgactgccttcattcactaattgtgatattttcaaagttcatccac i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534196 133 + 247518478 taagc-------------------------------agcca---ctaatcta-ttttctgctctataagtttgcctattgtaggc-----tttctagaagtggaatcctataatacatgccctttcctgactgccttcattcactaattgtgatattttcaaagttcatccac i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119490899 133 + 131632457 taagc-------------------------------agcca---ctaattta-ttttctgctctataagtttgcctattgtaggc-----tttctagaagtggaatcctataatacatgccctttcctgactgccttcattcactaattgtgatattttcaaagttcatccat i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122712865 135 + 135000294 taagc-------------------------------agctg---ctaatcta-ttttctgctctataaatttgcttattctaggc---attttctgcaaatggaatcctatcatacatcccctttcatgactggctgcttttaatgagcatgatgttttcaaagttcattcat i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674834 133 + 6458163 -aagc-------------------------------agcca---ctaatcta-tttcctgctctataagtttgcctactgtaggc----ctttctagaaatggaatcctataatacatgccctttcctgactgccttcattcacaaattgtgatattttcaaagttcatccat i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94083807 132 + 106825570 taagc-------------------------------agcca---ctaatcta-ttttctgctctataagtttgcctattgtaggc----ctttctagaaatggaattctataatacatgccctttcctaactgccttcgttcactgattgtggtattttcaaagttcttct-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146763928 134 + 158406734 taagc-------------------------------agcca---ctaatcta-ttttctgctctataagtttgcctattgtaggc----ctttctataaatggaactctataatacatgccctttactgactgccttcattcactgagcatgatattttcaaagttcatccac i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 12979 153 + 18451090 ttacct---caatgccca----------gccctgagtgctg---ctaatcaa-tgttctgttctataaatttgcctattctaaac---attttctacaaatggaatcctgtaacacataccctttcatgactggctgcttttaatgagtatggtgctttcaaagtttattcat i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842358 168 - 32117204 -----cagtcaatgcccatttccaccttatcccactagccagtcctaatctatttttctgctatataaatttgcttgttttagaagccactttatatagatagactcttgtaatacatctccttttgtgactggcttctttcactgagtatgatggtttcaaagatcatccct i otoGar3.GL873532 I 4 I 3 s canFam3.chr25 42516304 133 + 51628933 taagc-------------------------------agcca---ctaatcta-ttttctgcttaataaattggcttattctaggt---atttcacataaatgaaat--tataaaatgtgcctttttatgactgggttctttcacttagcatgatattttcaaggttcatccat i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073156 99 - 2169676 taagc-------------------------------agcca---ctaatcta-ttttctgcttcatacattggcctattctgtgt---a------------------------------------tatgatggggctctttcacttaacatgatgttttcaaggttcatccat i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880860 134 + 84719076 taagc-------------------------------aaaca---caaatcta-ttttctgctttataaattggcgtattctaggt---atttcaaataaatggaatcatatgatatgtggccttttgtgaat-ggctctttcacttagcatgatgttttcaaggttcattcat i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57311 171 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=-611.000000 s mm10.chr1_GL456221_random 137522 2 + 206961 gt s hg19.chr2 231156294 2 + 243199373 aa i hg19.chr2 C 0 I 2 s panTro4.chr2B 235534329 2 + 247518478 aa i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119491032 2 + 131632457 aa i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122713000 2 + 135000294 at i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3674967 2 + 6458163 aa i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94083939 2 + 106825570 at i rheMac3.chr12 C 0 I 4 s papHam1.scaffold13267 57482 1 + 66950 -t i papHam1.scaffold13267 I 171 I 173 s calJac3.chr6 146764062 2 + 158406734 ag i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 13132 2 + 18451090 aa i saiBol1.JH378144 C 0 I 2 s otoGar3.GL873532 28842529 2 - 32117204 gt i otoGar3.GL873532 I 3 I 2 s canFam3.chr25 42516437 2 + 51628933 gt i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073255 2 - 2169676 gt i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880994 2 + 84719076 gt i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I e rn5.chr9 92381835 0 + 121549591 C a score=19351.000000 s mm10.chr1_GL456221_random 137524 18 + 206961 -----agtttat--gcaagatatag s rn5.chr9 92381835 14 + 121549591 ---------tat--gtaatagatag i rn5.chr9 C 0 C 0 s hg19.chr2 231156298 18 + 243199373 -----aatgtattagtatttcat-- i hg19.chr2 I 2 I 2 s panTro4.chr2B 235534333 18 + 247518478 -----aatgtattagtatttcat-- i panTro4.chr2B I 2 I 2 s gorGor3.chr2B 119491036 18 + 131632457 -----aatgtattagtatttcat-- i gorGor3.chr2B I 2 I 2 s ponAbe2.chr2b 122713004 18 + 135000294 -----aatgtattggtacttcat-- i ponAbe2.chr2b I 2 I 2 s nomLeu2.GL397366 3674971 18 + 6458163 -----aatgtattagtatttcat-- i nomLeu2.GL397366 I 2 I 2 s rheMac3.chr12 94083945 18 + 106825570 -----aatgtattagtacttcat-- i rheMac3.chr12 I 4 I 2 s calJac3.chr6 146764066 18 + 158406734 -----actgtattagtacttcat-- i calJac3.chr6 I 2 I 2 s saiBol1.JH378144 13136 18 + 18451090 -----aatgtattggtacttcat-- i saiBol1.JH378144 I 2 I 2 s otoGar3.GL873532 28842533 18 - 32117204 -----cttgtgttagtacttcat-- i otoGar3.GL873532 I 2 I 3 s canFam3.chr25 42516439 12 + 51628933 aatagaatatat------------- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073257 12 - 2169676 agtagcatgtat------------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17880996 12 + 84719076 aatagtgtgtat------------- i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57483 173 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126277 233 + 176633 I a score=3291.000000 s mm10.chr1_GL456221_random 137542 1 + 206961 t s rn5.chr9 92381849 1 + 121549591 c i rn5.chr9 C 0 C 0 s hg19.chr2 231156318 1 + 243199373 c i hg19.chr2 I 2 C 0 s panTro4.chr2B 235534353 1 + 247518478 c i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119491056 1 + 131632457 c i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122713024 1 + 135000294 c i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3674991 1 + 6458163 c i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94083965 1 + 106825570 c i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146764086 1 + 158406734 c i calJac3.chr6 I 2 C 0 s saiBol1.JH378144 13156 1 + 18451090 c i saiBol1.JH378144 I 2 C 0 s micMur1.scaffold_3075 126510 1 + 176633 t i micMur1.scaffold_3075 I 233 I 79 s otoGar3.GL873532 28842554 1 - 32117204 t i otoGar3.GL873532 I 3 C 0 s canFam3.chr25 42516451 1 + 51628933 t i canFam3.chr25 C 0 I 18 s ailMel1.GL192536.1 1073269 1 - 2169676 t i ailMel1.GL192536.1 C 0 I 11 s equCab2.chr6 17881008 1 + 84719076 t i equCab2.chr6 C 0 I 14 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57483 173 + 66950 I e felCat5.chrC1 212439728 310 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=27001.000000 s mm10.chr1_GL456221_random 137543 10 + 206961 tttcattta-g s rn5.chr9 92381850 10 + 121549591 cttaattga-t i rn5.chr9 C 0 C 0 s hg19.chr2 231156319 10 + 243199373 ttttattga-c i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534354 10 + 247518478 ttttattga-c i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491057 10 + 131632457 ttttattga-c i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713025 10 + 135000294 ttttattga-t i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3674992 10 + 6458163 ttttattga-c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083966 10 + 106825570 ttttattga-c i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764087 10 + 158406734 ttttattca-c i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13157 10 + 18451090 ttttattga-t i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842555 10 - 32117204 ttttattgg-c i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212440038 8 + 221441202 tttttttt--- i felCat5.chrC1 I 310 I 86 s canFam3.chr25 42516470 9 + 51628933 ttttttttg-- i canFam3.chr25 I 18 I 2 s ailMel1.GL192536.1 1073281 9 - 2169676 ttttgttga-- i ailMel1.GL192536.1 I 11 I 2 s equCab2.chr6 17881023 10 + 84719076 ttttattgcc- i equCab2.chr6 I 14 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57483 173 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126511 79 + 176633 I a score=279888.000000 s mm10.chr1_GL456221_random 137553 72 + 206961 gaataacgtgatatt---ccactgtatgtacatattacattttcatcattccttcctcagtttggattatttctg s rn5.chr9 92381860 70 + 121549591 gaataatatgatatt---tcgctgtacacacacattacattttcaccattcagtcatcagtttggatagtttt-- i rn5.chr9 C 0 C 0 s hg19.chr2 231156329 69 + 243199373 aaataat---atatg---tcattgtatagatataccacactttgtttataaactcatcatttggaactatttcca i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534364 69 + 247518478 aaataat---atatt---tcattgtatagatataccacactttgtttataaactcatcatttggaactattttca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491067 69 + 131632457 aaataat---atatt---tcattgtatagatataccacactttgtttataaactcatcatttggaactattttca i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713035 69 + 135000294 aaatcat---atatt---tcattgtatagatataccacatttagtttatccattcatcctcttgggttattttca i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675002 69 + 6458163 agataat---gtatt---tcattgtatagatataccacattttgtttataaactcatcatttggaactattttca i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94083976 69 + 106825570 aaataat---atatt---tcattgtatagatataccacattttgtttataaactcatcatttggaactattttca i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764097 69 + 158406734 aaataat---atatt---tcattgtatagatatactacattttgtttataaactcattatttggaactattttca i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13167 69 + 18451090 aaataat---atatt---taattgtatagatatatcacattttgtttatccattcatcaacttggtttatgttca i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842565 68 - 32117204 aaataat---gtaatagaccattgcatggctatgccacattttattcat----tcttcagtttgagttgttttca i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516481 67 + 51628933 aagtaat---atatt---tcatagtgtcaatacatcatatac--atcattcattcatcagtttgggttgtttcca i canFam3.chr25 I 2 I 1 s ailMel1.GL192536.1 1073292 67 - 2169676 aaataat---atatt---tcatggtgtgaatacaccaaatac--atcattcatccatcagtttgggttgtttcca i ailMel1.GL192536.1 I 2 I 1 s equCab2.chr6 17881033 64 + 84719076 aaatgatataatatt---tcatgg--------aaccatattttgtttatccattcattaatttgggttttttcca i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57483 173 + 66950 I e felCat5.chrC1 212440046 86 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126511 79 + 176633 I a score=3971.000000 s mm10.chr1_GL456221_random 137625 1 + 206961 t s hg19.chr2 231156398 1 + 243199373 c i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534433 1 + 247518478 c i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491136 1 + 131632457 c i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713104 1 + 135000294 c i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675071 1 + 6458163 c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084045 1 + 106825570 c i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764166 1 + 158406734 c i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13236 1 + 18451090 t i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842633 1 - 32117204 c i otoGar3.GL873532 C 0 I 2 s felCat5.chrC1 212440132 1 + 221441202 c i felCat5.chrC1 I 86 C 0 s equCab2.chr6 17881097 1 + 84719076 c i equCab2.chr6 C 0 C 0 e canFam3.chr25 42516548 1 + 51628933 I e ailMel1.GL192536.1 1073359 1 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57483 173 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126511 79 + 176633 I e rn5.chr9 92381930 0 + 121549591 C a score=6392.000000 s mm10.chr1_GL456221_random 137626 1 + 206961 t s hg19.chr2 231156399 1 + 243199373 t i hg19.chr2 C 0 I 1 s panTro4.chr2B 235534434 1 + 247518478 t i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119491137 1 + 131632457 t i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122713105 1 + 135000294 t i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3675072 1 + 6458163 t i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94084046 1 + 106825570 t i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146764167 1 + 158406734 t i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 13237 1 + 18451090 t i saiBol1.JH378144 C 0 I 1 s micMur1.scaffold_3075 126590 1 + 176633 c i micMur1.scaffold_3075 I 79 I 21 s otoGar3.GL873532 28842636 1 - 32117204 c i otoGar3.GL873532 I 2 C 0 s felCat5.chrC1 212440133 1 + 221441202 t i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42516549 1 + 51628933 t i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1073360 1 - 2169676 t i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17881098 1 + 84719076 t i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57483 173 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e rn5.chr9 92381930 0 + 121549591 C a score=10651.000000 s mm10.chr1_GL456221_random 137627 2 + 206961 tt s hg19.chr2 231156401 2 + 243199373 tt i hg19.chr2 I 1 C 0 s panTro4.chr2B 235534436 2 + 247518478 tt i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119491139 2 + 131632457 tt i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122713107 2 + 135000294 tt i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3675074 2 + 6458163 tt i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94084048 2 + 106825570 tt i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146764169 2 + 158406734 tt i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 13239 2 + 18451090 tt i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 28842637 1 - 32117204 -t i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212440134 2 + 221441202 ct i felCat5.chrC1 C 0 I 175 s canFam3.chr25 42516550 2 + 51628933 ct i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1073361 2 - 2169676 ct i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17881099 2 + 84719076 ct i equCab2.chr6 C 0 I 1 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57483 173 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126591 21 + 176633 I e rn5.chr9 92381930 0 + 121549591 C a score=87688.000000 s mm10.chr1_GL456221_random 137629 16 + 206961 gggatgtaataaataa s rn5.chr9 92381930 15 + 121549591 -acatgtaataaatag i rn5.chr9 C 0 C 0 s hg19.chr2 231156403 16 + 243199373 tggctattataaataa i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534438 16 + 247518478 tggctattataaataa i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491141 16 + 131632457 tagctattataaataa i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713109 16 + 135000294 tggctgttataaataa i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675076 16 + 6458163 tggctattataaataa i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084050 16 + 106825570 tggctattataaataa i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764171 16 + 158406734 tggctattataaataa i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13241 16 + 18451090 tggctgctataaacaa i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842638 16 - 32117204 tgggagttataaataa i otoGar3.GL873532 C 0 I 3 s canFam3.chr25 42516553 16 + 51628933 gggctattatgcataa i canFam3.chr25 I 1 I 3 s ailMel1.GL192536.1 1073364 16 - 2169676 tggctattatgaataa i ailMel1.GL192536.1 I 1 I 3 s equCab2.chr6 17881102 16 + 84719076 tggctattacgaacaa i equCab2.chr6 I 1 I 3 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57483 173 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126591 21 + 176633 I a score=20055.000000 s mm10.chr1_GL456221_random 137645 2 + 206961 tg s rn5.chr9 92381945 2 + 121549591 tg i rn5.chr9 C 0 C 0 s hg19.chr2 231156419 2 + 243199373 tg i hg19.chr2 C 0 I 3 s panTro4.chr2B 235534454 2 + 247518478 tg i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119491157 2 + 131632457 tg i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122713125 2 + 135000294 tg i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3675092 2 + 6458163 tg i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94084066 2 + 106825570 tg i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146764187 2 + 158406734 tg i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13257 2 + 18451090 tg i saiBol1.JH378144 C 0 I 3 s micMur1.scaffold_3075 126612 2 + 176633 tg i micMur1.scaffold_3075 I 21 I 49 s otoGar3.GL873532 28842657 2 - 32117204 tg i otoGar3.GL873532 I 3 C 0 s canFam3.chr25 42516572 2 + 51628933 tg i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1073383 2 - 2169676 tg i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17881121 2 + 84719076 tg i equCab2.chr6 I 3 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57483 173 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=151282.000000 s mm10.chr1_GL456221_random 137647 47 + 206961 tttggagaattcgaggagg-acaacatg------tgtaggaatatacatactca s rn5.chr9 92381947 44 + 121549591 ttttgagaattc---aagg-tcaacatg------tgtaggaacacacatactca i rn5.chr9 C 0 C 0 s hg19.chr2 231156424 42 + 243199373 ttctgaacattt--gtgta-acaagttt------tgtgtgaacata---tttca i hg19.chr2 I 3 I 5 s panTro4.chr2B 235534459 42 + 247518478 ttctgaacattt--gtgta-acaagttt------tgtgtgaacata---tttca i panTro4.chr2B I 3 I 5 s gorGor3.chr2B 119491162 42 + 131632457 ttctgaacattt--gtgta-acaagttt------tgtgtgaacata---tttca i gorGor3.chr2B I 3 I 5 s ponAbe2.chr2b 122713130 42 + 135000294 ttttgaacattt--atgtt-aagagttt------ggtgagaacata---tttca i ponAbe2.chr2b I 3 I 5 s nomLeu2.GL397366 3675097 42 + 6458163 ttctgaacattt--gtgta-acaagttt------tgtgtgaacata---tttca i nomLeu2.GL397366 I 3 I 5 s rheMac3.chr12 94084071 42 + 106825570 tcctgaacattt--gtgta-acaagttt------tgtgtgaacata---tttca i rheMac3.chr12 I 3 I 4 s calJac3.chr6 146764189 42 + 158406734 ttttgaacatat--gtgta-acaagttt------tgtgtgaacata---tttca i calJac3.chr6 C 0 I 5 s saiBol1.JH378144 13262 42 + 18451090 ttttgaacattc--attta-acaaattt------ggtgtgaacata---tttca i saiBol1.JH378144 I 3 I 5 s otoGar3.GL873532 28842659 44 - 32117204 ttttgagcattt--gtat--gcgagttc------tgtgtgaatatatgcttcca i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516574 51 + 51628933 ttttgaatattc--atgta-tgagtttttgtgtgtgtgtgaacaaatattttca i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073385 45 - 2169676 ttttgaatattc--atgta-tgagtttt------tgtgtgaacgaatgttttca i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881123 45 + 84719076 ttttgaa-attc--atgtaccaagtttt------tctgtgaacatatgttttca i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57483 173 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126614 49 + 176633 I a score=294.000000 s mm10.chr1_GL456221_random 137694 1 + 206961 g s rn5.chr9 92381991 1 + 121549591 g i rn5.chr9 C 0 C 0 s otoGar3.GL873532 28842703 1 - 32117204 a i otoGar3.GL873532 C 0 I 4 s canFam3.chr25 42516625 1 + 51628933 a i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073430 1 - 2169676 g i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881168 1 + 84719076 a i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 13304 5 + 18451090 I e ponAbe2.chr2b 122713172 5 + 135000294 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e rheMac3.chr12 94084113 4 + 106825570 I e nomLeu2.GL397366 3675139 5 + 6458163 I e gorGor3.chr2B 119491204 5 + 131632457 I e panTro4.chr2B 235534501 5 + 247518478 I e hg19.chr2 231156466 5 + 243199373 I e calJac3.chr6 146764231 5 + 158406734 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57483 173 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126614 49 + 176633 I a score=15555.000000 s mm10.chr1_GL456221_random 137695 2 + 206961 tt s rn5.chr9 92381992 2 + 121549591 gt i rn5.chr9 C 0 C 0 s hg19.chr2 231156471 2 + 243199373 tt i hg19.chr2 I 5 C 0 s panTro4.chr2B 235534506 2 + 247518478 tt i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 119491209 2 + 131632457 tt i gorGor3.chr2B I 5 C 0 s ponAbe2.chr2b 122713177 2 + 135000294 tt i ponAbe2.chr2b I 5 C 0 s nomLeu2.GL397366 3675144 2 + 6458163 tt i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 94084117 2 + 106825570 tt i rheMac3.chr12 I 4 C 0 s papHam1.scaffold13267 57656 2 + 66950 tt i papHam1.scaffold13267 I 173 C 0 s calJac3.chr6 146764236 2 + 158406734 tt i calJac3.chr6 I 5 C 0 s saiBol1.JH378144 13309 2 + 18451090 tt i saiBol1.JH378144 I 5 C 0 s micMur1.scaffold_3075 126663 2 + 176633 tt i micMur1.scaffold_3075 I 49 I 214 s otoGar3.GL873532 28842708 2 - 32117204 tt i otoGar3.GL873532 I 4 C 0 s canFam3.chr25 42516626 2 + 51628933 tt i canFam3.chr25 C 0 I 7 s ailMel1.GL192536.1 1073431 2 - 2169676 tt i ailMel1.GL192536.1 C 0 I 7 s equCab2.chr6 17881169 2 + 84719076 ta i equCab2.chr6 C 0 I 7 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I a score=-6461.000000 s mm10.chr1_GL456221_random 137697 3 + 206961 -tga s rn5.chr9 92381994 3 + 121549591 -tga i rn5.chr9 C 0 C 0 s hg19.chr2 231156473 3 + 243199373 -tgg i hg19.chr2 C 0 I 1 s panTro4.chr2B 235534508 3 + 247518478 -tgg i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119491211 3 + 131632457 -tgg i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122713179 3 + 135000294 -gga i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3675146 3 + 6458163 -tgg i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94084119 3 + 106825570 -tgg i rheMac3.chr12 C 0 I 2 s papHam1.scaffold13267 57658 3 + 66950 -tga i papHam1.scaffold13267 C 0 I 19 s calJac3.chr6 146764238 3 + 158406734 -tgg i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 13311 3 + 18451090 -gga i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28842710 3 - 32117204 -tga i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42516635 3 + 51628933 tta- i canFam3.chr25 I 7 C 0 s ailMel1.GL192536.1 1073440 3 - 2169676 tta- i ailMel1.GL192536.1 I 7 C 0 s equCab2.chr6 17881178 3 + 84719076 aca- i equCab2.chr6 I 7 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=14630.000000 s mm10.chr1_GL456221_random 137700 4 + 206961 gaca s rn5.chr9 92381997 4 + 121549591 ggca i rn5.chr9 C 0 C 0 s hg19.chr2 231156477 4 + 243199373 tata i hg19.chr2 I 1 C 0 s panTro4.chr2B 235534512 4 + 247518478 tata i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119491215 4 + 131632457 tata i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122713183 4 + 135000294 tgta i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3675150 4 + 6458163 tata i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94084124 4 + 106825570 tata i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146764242 4 + 158406734 tgta i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 13315 4 + 18451090 tgta i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 28842714 4 - 32117204 tata i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42516638 2 + 51628933 --ta i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073443 2 - 2169676 --ta i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881181 2 + 84719076 --ta i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57661 19 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 14432 3161 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=9413.000000 s mm10.chr1_GL456221_random 137704 4 + 206961 --cact s rn5.chr9 92382001 4 + 121549591 --caca i rn5.chr9 C 0 C 0 s hg19.chr2 231156481 4 + 243199373 --tagt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534516 4 + 247518478 --tatt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491219 4 + 131632457 --tatt i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713187 4 + 135000294 --tatt i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675154 4 + 6458163 --tatt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084128 4 + 106825570 --tatt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764246 4 + 158406734 --tgtt i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13319 4 + 18451090 --tatt i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842718 4 - 32117204 --tact i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516640 4 + 51628933 --tacc i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073445 4 - 2169676 --tacc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881183 4 + 84719076 --tacc i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 17593 4 - 513109 tcta-- i dasNov3.JH581855 I 3161 I 220 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57661 19 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=15612.000000 s mm10.chr1_GL456221_random 137708 7 + 206961 gaaggga-- s rn5.chr9 92382005 7 + 121549591 gaagccg-- i rn5.chr9 C 0 C 0 s hg19.chr2 231156485 7 + 243199373 caagaga-- i hg19.chr2 C 0 I 2 s panTro4.chr2B 235534520 7 + 247518478 caagaga-- i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119491223 7 + 131632457 caagaga-- i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122713191 7 + 135000294 caagaaa-- i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3675158 7 + 6458163 caagaga-- i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94084132 7 + 106825570 caagaga-- i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146764250 7 + 158406734 caagaga-- i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 13323 7 + 18451090 caagaga-- i saiBol1.JH378144 C 0 I 2 s otoGar3.GL873532 28842722 7 - 32117204 caggaat-- i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42516644 9 + 51628933 caggagtgg i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073449 9 - 2169676 caggagtgc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881187 9 + 84719076 caggagtgg i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57661 19 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=12208.000000 s mm10.chr1_GL456221_random 137715 2 + 206961 ag s rn5.chr9 92382012 2 + 121549591 ag i rn5.chr9 C 0 C 0 s hg19.chr2 231156494 2 + 243199373 aa i hg19.chr2 I 2 C 0 s panTro4.chr2B 235534529 2 + 247518478 aa i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119491232 2 + 131632457 aa i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122713200 2 + 135000294 ag i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3675167 2 + 6458163 aa i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94084141 2 + 106825570 aa i rheMac3.chr12 I 2 C 0 s papHam1.scaffold13267 57680 2 + 66950 aa i papHam1.scaffold13267 I 19 I 666 s calJac3.chr6 146764259 2 + 158406734 aa i calJac3.chr6 I 2 C 0 s saiBol1.JH378144 13332 2 + 18451090 aa i saiBol1.JH378144 I 2 C 0 s otoGar3.GL873532 28842731 2 - 32117204 aa i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42516653 2 + 51628933 aa i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073458 2 - 2169676 ac i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881196 2 + 84719076 aa i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=326626.000000 s mm10.chr1_GL456221_random 137717 69 + 206961 tttctgggtcatgtggtgaaagattatatgttgaactcagtaaggaatcaccaaaatgtttttggtggt s rn5.chr9 92382014 65 + 121549591 ttgctaggtcatatggt----gattgtatgttgagctcagtgaggactcaccaaaatggttttggtggt i rn5.chr9 C 0 C 0 s hg19.chr2 231156496 64 + 243199373 tgactacatcgtatggt----aattctatgtttaatttattgaggaatcaccaaagtg-tttccacagt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534531 65 + 247518478 ttactacattgtatggt----aattctatgtttaatttattgaggaatcaccaaagtgttttccacagt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491234 65 + 131632457 ttactacatcgtatggt----aattctatttttaatttactgaggaatcaccaaagtgttttccacagt i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713202 65 + 135000294 ttgctgagtcaaatggt----aattctattcttaacttattgaggaaacaccaaagtgttttcaacagt i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675169 65 + 6458163 ttactgcatcgtatggt----aattctatgtttaacttattgaggaatcaccaaagtgttttccacagt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084143 65 + 106825570 ttactgcatcatatggt----aattctatgtttaactcattgaggaatcaccaaagtgtttttcacagt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764261 65 + 158406734 ttactaagtcaaatggt----aattctgtgtttaacctattgaggaatcaccaacgtgttttccacagt i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13334 65 + 18451090 ttgctgcagcaaatagt----aattctatttttaacttactgaggaaacaccaaagtgctttccacagt i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842733 65 - 32117204 ttggtgggtcacatggc----aattctatatttaacttattgaggaatcaccaaaccattttctgtaga i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516655 65 + 51628933 ttgctggttcatatggt----aaatctatatttaacttcctgagaaagcacaaaaatatttttcaccat i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073460 65 - 2169676 ctgctggttcatatggt----aaatctacatttaacttacggagaaagcaccaaaatgttttctacagt i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881198 64 + 84719076 tcactggttattatggt----aattgtatgtttaatttattgagaaa-cactaaaatgttttccacagt i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26312989 1282 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=13235.000000 s mm10.chr1_GL456221_random 137786 2 + 206961 gg s hg19.chr2 231156560 2 + 243199373 gg i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534596 2 + 247518478 gg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491299 2 + 131632457 gg i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713267 2 + 135000294 gg i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675234 2 + 6458163 gg i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084208 2 + 106825570 gg i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764326 2 + 158406734 gg i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13399 2 + 18451090 gg i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842798 2 - 32117204 ag i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516720 2 + 51628933 gg i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073525 2 - 2169676 gg i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881262 2 + 84719076 gg i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26314271 1 + 30916457 -a i myoLuc2.GL429770 I 1282 I 8 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I e rn5.chr9 92382079 0 + 121549591 C a score=27424.000000 s mm10.chr1_GL456221_random 137788 7 + 206961 ctacac-g s rn5.chr9 92382079 1 + 121549591 -------g i rn5.chr9 C 0 C 0 s hg19.chr2 231156562 8 + 243199373 ctgcacta i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534598 8 + 247518478 ctgcacta i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491301 8 + 131632457 ctgcacta i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713269 8 + 135000294 ctgcacta i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675236 8 + 6458163 ctgcacta i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084210 8 + 106825570 ctgcacta i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764328 8 + 158406734 ctgcacta i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13401 8 + 18451090 ctgcactg i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842800 8 - 32117204 ctgcacta i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516722 7 + 51628933 ctgcact- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073527 7 - 2169676 ctgccct- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881264 7 + 84719076 ctgcact- i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314272 8 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=-11069.000000 s mm10.chr1_GL456221_random 137795 2 + 206961 -gt s rn5.chr9 92382080 2 + 121549591 -tt i rn5.chr9 C 0 C 0 s hg19.chr2 231156570 2 + 243199373 -tt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534606 2 + 247518478 -tt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491309 2 + 131632457 -tt i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713277 2 + 135000294 -tt i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675244 2 + 6458163 -tt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084218 2 + 106825570 -tt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764336 2 + 158406734 -tt i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13409 2 + 18451090 -tt i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842808 2 - 32117204 -tt i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516729 2 + 51628933 at- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073534 2 - 2169676 at- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881271 2 + 84719076 aa- i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26314280 2 + 30916457 gt- i myoLuc2.GL429770 I 8 I 310 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=-10455.000000 s mm10.chr1_GL456221_random 137797 2 + 206961 tt- s rn5.chr9 92382082 2 + 121549591 ct- i rn5.chr9 C 0 C 0 s hg19.chr2 231156572 2 + 243199373 ct- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534608 2 + 247518478 ct- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491311 2 + 131632457 ct- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713279 2 + 135000294 ct- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675246 2 + 6458163 ct- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084220 2 + 106825570 ct- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764338 2 + 158406734 ct- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13411 2 + 18451090 ct- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842810 1 - 32117204 a-- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516731 2 + 51628933 -tt i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1073536 2 - 2169676 -tt i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17881273 2 + 84719076 -ta i equCab2.chr6 C 0 I 1 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 20607 424 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440136 175 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=37267.000000 s mm10.chr1_GL456221_random 137799 5 + 206961 gtttt s rn5.chr9 92382084 5 + 121549591 gtgtt i rn5.chr9 C 0 C 0 s hg19.chr2 231156574 5 + 243199373 gtatt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534610 5 + 247518478 gtatt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491313 5 + 131632457 gtatt i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713281 5 + 135000294 atatt i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675248 5 + 6458163 gtatt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084222 5 + 106825570 gtatt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764340 5 + 158406734 atatt i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13413 5 + 18451090 atatt i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842811 4 - 32117204 -tttt i otoGar3.GL873532 C 0 I 5 s turTru2.JH486691 21031 5 - 63237 atatt i turTru2.JH486691 I 424 I 41 s felCat5.chrC1 212440311 5 + 221441202 atatt i felCat5.chrC1 I 175 I 41 s canFam3.chr25 42516734 5 + 51628933 atatt i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1073539 5 - 2169676 atgtt i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17881276 5 + 84719076 atatt i equCab2.chr6 I 1 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=170483.000000 s mm10.chr1_GL456221_random 137804 35 + 206961 cccaccagcaatgcagggggcctcccacttcccta s rn5.chr9 92382089 35 + 121549591 cccaccagcaatgaagggggcctccaacttcccaa i rn5.chr9 C 0 C 0 s hg19.chr2 231156579 35 + 243199373 cctaccagcaatgtatgaaggctccaatttctcta i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534615 35 + 247518478 cctaccagcaatgtatgaaggctccaatttctcta i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491318 35 + 131632457 cctaccagcaatgtatgaaggctccaatttctcta i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713286 35 + 135000294 cccaccagaaatgtatgaaggctcccattcctcta i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675253 35 + 6458163 cctaccagcaatgtatgaaggctccaatttctcta i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084227 35 + 106825570 cctactggcagtgtgtgaaggctccagtttctcta i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764345 35 + 158406734 cccaccggccatgtttgaaggctccaatttctcta i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13418 35 + 18451090 cccaccagaaatgtatgaaggctcctgtttctcta i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842820 31 - 32117204 cccaccagcaatgtataaaggcttcagtttc---- i otoGar3.GL873532 I 5 C 0 s canFam3.chr25 42516739 35 + 51628933 cccaccagcaatgtctgagggccccaatttttcaa i canFam3.chr25 C 0 I 6 s ailMel1.GL192536.1 1073544 35 - 2169676 cccaccggcaatgtctgagggccccaatttttcta i ailMel1.GL192536.1 C 0 I 6 s equCab2.chr6 17881281 21 + 84719076 cccaccagcagtgt------------atccttg-- i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21036 41 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440316 41 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=2492.000000 s mm10.chr1_GL456221_random 137839 1 + 206961 t s rn5.chr9 92382124 1 + 121549591 t i rn5.chr9 C 0 C 0 s hg19.chr2 231156614 1 + 243199373 c i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534650 1 + 247518478 c i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491353 1 + 131632457 c i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713321 1 + 135000294 c i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675288 1 + 6458163 c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084262 1 + 106825570 c i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764380 1 + 158406734 t i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13453 1 + 18451090 c i saiBol1.JH378144 C 0 C 0 s turTru2.JH486691 21077 1 - 63237 t i turTru2.JH486691 I 41 I 100 s felCat5.chrC1 212440357 1 + 221441202 t i felCat5.chrC1 I 41 I 66 s canFam3.chr25 42516780 1 + 51628933 t i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1073585 1 - 2169676 t i ailMel1.GL192536.1 I 6 C 0 e otoGar3.GL873532 28842851 0 - 32117204 C e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e equCab2.chr6 17881302 0 + 84719076 C e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=78769.000000 s mm10.chr1_GL456221_random 137840 31 + 206961 gt-----caaaa-gctgctgtttc-ctttcg----tcttctc s rn5.chr9 92382125 32 + 121549591 gc-----caaaa-gctgtggttccatttttg----ttttctg i rn5.chr9 C 0 C 0 s hg19.chr2 231156615 40 + 243199373 atgctcaccaac-tttgttatcgt-ctgtctgtcttttttta i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534651 40 + 247518478 atgctcaccaac-tttgttatcat-ctgtctgtcttttttta i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491354 40 + 131632457 atgctcaccaac-tttgttatcgt-ctgtctgtcttttttta i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713322 36 + 135000294 acactcaccaacacttgttattgt-ttgtc-----tttttta i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675289 40 + 6458163 atgctcaccaac-tttgtcattgt-ctgtctgtcttttttta i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084263 39 + 106825570 atgctcaccaac-tttgttatcat-ctgtctgtc-tttttta i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764381 33 + 158406734 atgcccgccagc-cttgttattgc-ctg-------tttttta i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13454 36 + 18451090 acactcgccaacacttgttattgt-ctatc-----tttttta i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842851 36 - 32117204 atactcactaatgcttcttattgt-ccatc-----tttttta i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516781 30 + 51628933 ------gtcaatacttgttattgt-ctgat-----tttttta i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1073586 30 - 2169676 ------atcaatacttgttattgt-ctgat-----tttttaa i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17881302 29 + 84719076 -------ccaacactttttattgt-ttgcc-----cttttta i equCab2.chr6 C 0 I 1 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21078 100 - 63237 I e vicPac1.scaffold_13731 10090 1010 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440358 66 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=-7589.000000 s mm10.chr1_GL456221_random 137871 2 + 206961 ta s rn5.chr9 92382157 2 + 121549591 tc i rn5.chr9 C 0 C 0 s hg19.chr2 231156655 2 + 243199373 tt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534691 2 + 247518478 tt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491394 2 + 131632457 tt i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713358 2 + 135000294 tt i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675329 2 + 6458163 tt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084302 2 + 106825570 tt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764414 2 + 158406734 tt i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13490 2 + 18451090 tt i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842887 2 - 32117204 tt i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 11100 1 + 11994 t- i vicPac1.scaffold_13731 I 1010 I 57 s canFam3.chr25 42516812 1 + 51628933 t- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1073617 1 - 2169676 t- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17881332 1 + 84719076 t- i equCab2.chr6 I 1 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21078 100 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440358 66 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=150072.000000 s mm10.chr1_GL456221_random 137873 29 + 206961 atg--------gttatcctggtgggtgtaaaatggtg s rn5.chr9 92382159 29 + 121549591 atg--------gttatcctggtgggtgtgaaatggtg i rn5.chr9 C 0 C 0 s hg19.chr2 231156657 37 + 243199373 acagtcatactgtcatcctagtgggtatgacatggta i hg19.chr2 C 0 I 1 s panTro4.chr2B 235534693 37 + 247518478 actgtcatactgtcatcctagtgggtatgacatggta i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119491396 37 + 131632457 acagtcatactgtcatcctagtgggtatgacatggta i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122713360 29 + 135000294 atg--------atcatcctagtgggtgtgacatggta i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3675331 37 + 6458163 acagtcatcctgtcatcctagtgggtatgacatggta i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94084304 37 + 106825570 acagtcatcctatcatcctagtgggtgtgacatggtg i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146764416 29 + 158406734 aca--------atcatcctagtgggtgtgacatggta i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 13492 29 + 18451090 atg--------atcatcctagtgggtgtgacgtggta i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28842889 29 - 32117204 atg--------gctgtcccggtgggtatgaagtggta i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42516813 29 + 51628933 atg--------accatcctagtggttatgaagtgata i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073618 29 - 2169676 atg--------aacatcctagtgggtatggggtagta i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881333 29 + 84719076 gtg--------ttcatcctagtgggtgtgaagtggca i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21078 100 - 63237 I e vicPac1.scaffold_13731 11101 57 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440358 66 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126665 214 + 176633 I a score=4682.000000 s mm10.chr1_GL456221_random 137902 1 + 206961 t s rn5.chr9 92382188 1 + 121549591 c i rn5.chr9 C 0 C 0 s hg19.chr2 231156695 1 + 243199373 c i hg19.chr2 I 1 I 3 s panTro4.chr2B 235534731 1 + 247518478 c i panTro4.chr2B I 1 I 3 s gorGor3.chr2B 119491434 1 + 131632457 c i gorGor3.chr2B I 1 I 3 s ponAbe2.chr2b 122713390 1 + 135000294 c i ponAbe2.chr2b I 1 I 3 s nomLeu2.GL397366 3675369 1 + 6458163 c i nomLeu2.GL397366 I 1 I 3 s rheMac3.chr12 94084342 1 + 106825570 c i rheMac3.chr12 I 1 I 3 s calJac3.chr6 146764446 1 + 158406734 c i calJac3.chr6 I 1 I 3 s saiBol1.JH378144 13522 1 + 18451090 c i saiBol1.JH378144 I 1 I 3 s micMur1.scaffold_3075 126879 1 + 176633 c i micMur1.scaffold_3075 I 214 I 13 s otoGar3.GL873532 28842919 1 - 32117204 c i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42516842 1 + 51628933 t i canFam3.chr25 C 0 I 3 s ailMel1.GL192536.1 1073647 1 - 2169676 t i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17881362 1 + 84719076 t i equCab2.chr6 C 0 I 3 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21078 100 - 63237 I e vicPac1.scaffold_13731 11101 57 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440358 66 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I a score=-31.000000 s mm10.chr1_GL456221_random 137903 1 + 206961 g s rn5.chr9 92382189 1 + 121549591 a i rn5.chr9 C 0 C 0 e saiBol1.JH378144 13523 3 + 18451090 I e ponAbe2.chr2b 122713391 3 + 135000294 I e otoGar3.GL873532 28842920 0 - 32117204 C e canFam3.chr25 42516843 3 + 51628933 I e ailMel1.GL192536.1 1073648 3 - 2169676 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21078 100 - 63237 I e rheMac3.chr12 94084343 3 + 106825570 I e equCab2.chr6 17881363 3 + 84719076 I e nomLeu2.GL397366 3675370 3 + 6458163 I e gorGor3.chr2B 119491435 3 + 131632457 I e panTro4.chr2B 235534732 3 + 247518478 I e hg19.chr2 231156696 3 + 243199373 I e calJac3.chr6 146764447 3 + 158406734 I e vicPac1.scaffold_13731 11101 57 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440358 66 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126880 13 + 176633 I a score=3895.000000 s mm10.chr1_GL456221_random 137904 2 + 206961 gt s rn5.chr9 92382190 2 + 121549591 gt i rn5.chr9 C 0 C 0 s hg19.chr2 231156699 1 + 243199373 -t i hg19.chr2 I 3 C 0 s panTro4.chr2B 235534735 1 + 247518478 -t i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119491438 1 + 131632457 -t i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122713394 1 + 135000294 -c i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3675373 1 + 6458163 -t i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94084346 1 + 106825570 -t i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146764450 1 + 158406734 -t i calJac3.chr6 I 3 C 0 s saiBol1.JH378144 13526 1 + 18451090 -t i saiBol1.JH378144 I 3 C 0 s otoGar3.GL873532 28842920 1 - 32117204 -t i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212440424 1 + 221441202 -c i felCat5.chrC1 I 66 I 41 s canFam3.chr25 42516846 2 + 51628933 gt i canFam3.chr25 I 3 I 1 s ailMel1.GL192536.1 1073651 2 - 2169676 at i ailMel1.GL192536.1 I 3 I 1 s equCab2.chr6 17881366 2 + 84719076 ac i equCab2.chr6 I 3 I 1 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21078 100 - 63237 I e vicPac1.scaffold_13731 11101 57 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126880 13 + 176633 I a score=16813.000000 s mm10.chr1_GL456221_random 137906 11 + 206961 aggaattttgt- s rn5.chr9 92382192 11 + 121549591 agcaattttgt- i rn5.chr9 C 0 C 0 s hg19.chr2 231156700 11 + 243199373 tttggttttgg- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235534736 11 + 247518478 tttggttttgg- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119491439 11 + 131632457 tttggttttgg- i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122713395 11 + 135000294 tgtggttttgc- i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3675374 11 + 6458163 tttggttttgg- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94084347 11 + 106825570 tgtggttttgc- i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146764451 11 + 158406734 tgtgggtttgc- i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 13527 11 + 18451090 tgtggttttgc- i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28842921 8 - 32117204 cattgtat---- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516849 11 + 51628933 -gtggttttgat i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1073654 11 - 2169676 -atgtttttgat i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17881369 11 + 84719076 -gtggctttagt i equCab2.chr6 I 1 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21078 100 - 63237 I e vicPac1.scaffold_13731 11101 57 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440425 41 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126880 13 + 176633 I a score=7847.000000 s mm10.chr1_GL456221_random 137917 1 + 206961 t s rn5.chr9 92382203 1 + 121549591 t i rn5.chr9 C 0 C 0 s hg19.chr2 231156712 1 + 243199373 t i hg19.chr2 I 1 C 0 s panTro4.chr2B 235534748 1 + 247518478 t i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119491451 1 + 131632457 t i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122713407 1 + 135000294 t i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3675386 1 + 6458163 t i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94084359 1 + 106825570 t i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146764463 1 + 158406734 t i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 13539 1 + 18451090 t i saiBol1.JH378144 I 1 C 0 s micMur1.scaffold_3075 126893 1 + 176633 c i micMur1.scaffold_3075 I 13 I 21 s otoGar3.GL873532 28842929 1 - 32117204 t i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516860 1 + 51628933 t i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073665 1 - 2169676 t i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881380 1 + 84719076 t i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21078 100 - 63237 I e vicPac1.scaffold_13731 11101 57 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440425 41 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I a score=51526.000000 s mm10.chr1_GL456221_random 137918 11 + 206961 ctcattttcat s rn5.chr9 92382204 11 + 121549591 tgcgttttcat i rn5.chr9 C 0 C 0 s hg19.chr2 231156713 11 + 243199373 tgtgtttcctt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534749 11 + 247518478 tgtgtttcctt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491452 11 + 131632457 tgtgtttcctt i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713408 11 + 135000294 tgcatttccct i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675387 11 + 6458163 tgtgtttcctt i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084360 11 + 106825570 tgtgtttcctt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764464 11 + 158406734 tgtgtttcctt i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13540 11 + 18451090 tgcatttccct i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842930 11 - 32117204 tgcatttctct i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516861 11 + 51628933 tatgtttctcc i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073666 11 - 2169676 tgcatctctcc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881381 11 + 84719076 tgcatttctcg i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21078 100 - 63237 I e vicPac1.scaffold_13731 11101 57 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440425 41 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17597 220 - 513109 I e micMur1.scaffold_3075 126894 21 + 176633 I a score=7847.000000 s mm10.chr1_GL456221_random 137929 1 + 206961 a s rn5.chr9 92382215 1 + 121549591 a i rn5.chr9 C 0 C 0 s hg19.chr2 231156724 1 + 243199373 a i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534760 1 + 247518478 a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491463 1 + 131632457 a i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713419 1 + 135000294 a i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675398 1 + 6458163 a i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084371 1 + 106825570 a i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764475 1 + 158406734 a i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13551 1 + 18451090 a i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842941 1 - 32117204 a i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516872 1 + 51628933 a i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073677 1 - 2169676 a i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881392 1 + 84719076 a i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 17817 1 - 513109 g i dasNov3.JH581855 I 220 I 255 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21078 100 - 63237 I e vicPac1.scaffold_13731 11101 57 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440425 41 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e micMur1.scaffold_3075 126894 21 + 176633 I a score=33486.000000 s mm10.chr1_GL456221_random 137930 7 + 206961 ataatgg s rn5.chr9 92382216 7 + 121549591 ataacga i rn5.chr9 C 0 C 0 s hg19.chr2 231156725 7 + 243199373 atggcta i hg19.chr2 C 0 I 1 s panTro4.chr2B 235534761 7 + 247518478 atggcta i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119491464 7 + 131632457 atggcta i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122713420 7 + 135000294 atggctg i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3675399 7 + 6458163 atggcta i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94084372 7 + 106825570 atggcta i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146764476 7 + 158406734 atgacta i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 13552 7 + 18451090 atggctg i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28842942 7 - 32117204 atgatta i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42516873 7 + 51628933 atgactg i canFam3.chr25 C 0 I 5 s ailMel1.GL192536.1 1073678 7 - 2169676 gtgactg i ailMel1.GL192536.1 C 0 I 5 s equCab2.chr6 17881393 7 + 84719076 atgactt i equCab2.chr6 C 0 I 1 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21078 100 - 63237 I e vicPac1.scaffold_13731 11101 57 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440425 41 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 126894 21 + 176633 I a score=10285.000000 s mm10.chr1_GL456221_random 137937 1 + 206961 t s rn5.chr9 92382223 1 + 121549591 a i rn5.chr9 C 0 C 0 s hg19.chr2 231156733 1 + 243199373 t i hg19.chr2 I 1 C 0 s panTro4.chr2B 235534769 1 + 247518478 t i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119491472 1 + 131632457 t i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122713428 1 + 135000294 t i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3675407 1 + 6458163 t i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94084380 1 + 106825570 t i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146764484 1 + 158406734 t i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 13560 1 + 18451090 t i saiBol1.JH378144 I 1 C 0 s micMur1.scaffold_3075 126915 1 + 176633 t i micMur1.scaffold_3075 I 21 I 181 s otoGar3.GL873532 28842950 1 - 32117204 t i otoGar3.GL873532 I 1 C 0 s vicPac1.scaffold_13731 11158 1 + 11994 t i vicPac1.scaffold_13731 I 57 I 200 s turTru2.JH486691 21178 1 - 63237 t i turTru2.JH486691 I 100 I 151 s felCat5.chrC1 212440466 1 + 221441202 t i felCat5.chrC1 I 41 C 0 s canFam3.chr25 42516885 1 + 51628933 t i canFam3.chr25 I 5 C 0 s ailMel1.GL192536.1 1073690 1 - 2169676 t i ailMel1.GL192536.1 I 5 C 0 s equCab2.chr6 17881401 1 + 84719076 t i equCab2.chr6 I 1 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e papHam1.scaffold13267 57682 666 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I a score=-7697.000000 s mm10.chr1_GL456221_random 137938 2 + 206961 ga- s rn5.chr9 92382224 2 + 121549591 ga- i rn5.chr9 C 0 C 0 s hg19.chr2 231156734 2 + 243199373 gg- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534770 2 + 247518478 gg- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491473 2 + 131632457 gg- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713429 2 + 135000294 gg- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675408 2 + 6458163 gg- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084381 2 + 106825570 gg- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764485 2 + 158406734 gg- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13561 2 + 18451090 gg- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842951 2 - 32117204 gg- i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212440467 2 + 221441202 -gc i felCat5.chrC1 C 0 I 964 s canFam3.chr25 42516886 2 + 51628933 -gc i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073691 2 - 2169676 -gc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881402 2 + 84719076 -ga i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21179 151 - 63237 I e vicPac1.scaffold_13731 11159 200 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 126916 181 + 176633 I a score=542591.000000 s mm10.chr1_GL456221_random 137940 132 + 206961 tgccaaacatGTCATTAGCTTTTT---------AAAAAATCATA-ATCTCTATTTCCACGGGATAAGATTT---------ATGTCTGATGCTGTCTACCTATGACTGCAGGGATGGAC-AAACATCTGTTCAGTATTCCCTTTAAATTGGAT s rn5.chr9 92382226 140 + 121549591 tgtcaaacatATCCTTAGCTTTTTTTTTAAAAAAAGAAATCGTA-GTCTCTATTTCCATGGGATAGGATTT---------ATGTTTGATGGTGTCTACCTATGACGGCAGGGATGGAC-AAACTTCTGTTCAATATTCCCTTT-AATTGGAT i rn5.chr9 C 0 C 0 s hg19.chr2 231156736 137 + 243199373 tgttgagcatGTGACTATCTTTTA-------CATATAAATTAAA-TTTTTTATC------AGATAACATTTCACAATTAGTTTTTTAATATCAGCTACCTGTGATTGCAGGGATATGA-AAATTTCTGTTTAATAATGCCACTAGACTGCAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534772 137 + 247518478 tgttgagcatGTGACTATCTTTTA-------CATATAAATTAAA-TTTTTTATC------AGATAACATTTCACAATTAGTTTTTTAATATCAGCTACCCGTGATTGCAGGGATATGA-AAATTTCTGTTTAATAATGCCACTAGACTGCAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491475 137 + 131632457 tgttgagcatGTGACTATCTTTTA-------CATATAAATTAAA-TTTTTTATC------AGATAACATTTCACAATTAGTTTTTTAATATCAGCTACCCGTGATTGCAGGGATATGA-AAATTTCCGTTTAATAATGCCACTAGACTGCAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713431 128 + 135000294 ggt--------tgactatcttttA-------TATATAACTTAAT-TTTTCTATT------AGGTAACACTTCACAATTA-TTTTTTAATATCAGCTACCTGTGATTGCACAGATGAGA-AAATCTCTGTTCAATAATGCCCTAAAACTGAAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675410 137 + 6458163 tattgagcatGTGACTATCTTTTA-------CATATAAATTAAA-TTTTTAATC------AGATAACATTTCACAATTAGTTTTTTAATATCAGCTACCCGTGATTGCAGGGATATGA-AAATCTCTGTTCAATAATGCCACTAGACTGCAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084383 137 + 106825570 tattgagcatGTGACTATCTTTTA-------Catataaattaaa-ttttttatt------GGATAACATTTCACAATTAGTTTTTTAATATCAGCTACCCACGATTGCAGGGGTGTGA-AAATCTCTGTTCACTAATGCCACTAAACTGCAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764487 138 + 158406734 tgttgagcGTGTGGCTATCTTTTA-------CACAAACATTAAATTTTTTTATT------GGATAACATTTCACAATTAGTTTTTAAATATCAGCTACCCATGATTGCAGAGATGTGA-AAACTTCTGTTCAATAATGCCATTAAACTGCAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13563 136 + 18451090 tgttgagcatGTAACTGTCtttta-------tatataacttaaa-ttttctatt------agataatattttataattatttttt-aatatCAGCTACCTATGGTTGCAGAGATGAGA-AAATCTCTGTTCAATAATGCCATAAAACTGAAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28842953 102 - 32117204 tgttgtgcatgtggctaactattg-------gata------aca-tttc----------------acatttcacaatta-ctttttcatattggctacccatGATTTCAGGGATGGGAGAAATCTCTCCCCAA------------------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42516888 134 + 51628933 tgtttagcatAAGATTATCTTTCA-------TGCATAGCTT-AA-TTTTCCACT------GGGTAACATTTCATGATTA--TTTTTAATGTCAGGTATCCACGATTTCAGGGATGGGG-AAAACTCTGCTTAATAATGCTATTACACTGTAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073693 134 - 2169676 tgtttagcatAGGATTATCTTCTA-------TGCGTAGCTT-AA-TTTTCCACT------GGGTAGCATTTCACAATTA--TTTTTAATATCAGCTATCCGTGATTTCAGGGATGGGA-AAAGCTCTGCTTAATAATGCCATTACACTGGAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881404 135 + 84719076 tgcttagcatattattatCTTTTA-------CACATAAATTAAA-TTTTTCACT------GGATAATATTTCACAATTA--TTTTTAATATCAGCTATCCATGATTTCAAGAATGAGA-AAATCTGTGCTCAATAATGCCATTAAACTGAAT i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21179 151 - 63237 I e vicPac1.scaffold_13731 11159 200 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 126916 181 + 176633 I a score=26078.000000 s mm10.chr1_GL456221_random 138072 8 + 206961 AGAAAGCG s rn5.chr9 92382366 8 + 121549591 AGAAAACG i rn5.chr9 C 0 C 0 s hg19.chr2 231156873 8 + 243199373 AAAACATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534909 8 + 247518478 AAAACATG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491612 8 + 131632457 AAAACATG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713559 8 + 135000294 GAAAAATG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675547 8 + 6458163 AAAACATG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084520 8 + 106825570 AAAACATG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764625 8 + 158406734 AAAATATG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13699 8 + 18451090 GAAAAATG i saiBol1.JH378144 C 0 C 0 s vicPac1.scaffold_13731 11359 6 + 11994 --ACAATG i vicPac1.scaffold_13731 I 200 I 2 s canFam3.chr25 42517022 5 + 51628933 ---AAAAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073827 8 - 2169676 TAAAAAAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881539 8 + 84719076 GAAAAATG i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28843055 0 - 32117204 C e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21179 151 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 126916 181 + 176633 I a score=10818.000000 s mm10.chr1_GL456221_random 138080 4 + 206961 ATGT s rn5.chr9 92382374 4 + 121549591 ATGT i rn5.chr9 C 0 C 0 s hg19.chr2 231156881 4 + 243199373 TTAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534917 4 + 247518478 TTAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491620 4 + 131632457 TTAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713567 4 + 135000294 TTGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675555 4 + 6458163 TTAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084528 4 + 106825570 TTAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764633 4 + 158406734 TTAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13707 4 + 18451090 TTGT i saiBol1.JH378144 C 0 C 0 s vicPac1.scaffold_13731 11367 2 + 11994 --GT i vicPac1.scaffold_13731 I 2 I 2 s turTru2.JH486691 21330 3 - 63237 -AGG i turTru2.JH486691 I 151 I 667 s canFam3.chr25 42517027 4 + 51628933 ATGT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073835 4 - 2169676 ATGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881547 4 + 84719076 TTGT i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28843055 0 - 32117204 C e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 126916 181 + 176633 I a score=6153.000000 s mm10.chr1_GL456221_random 138084 15 + 206961 -------CACCTAA------------------------TCCTGAGT s rn5.chr9 92382378 15 + 121549591 -------CACCTAA------------------------TCCTGAGT i rn5.chr9 C 0 C 0 s hg19.chr2 231156885 39 + 243199373 -------AATTGAGAGTGCAGATGTTGCGGGAGTGACCCCCTGAGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534921 39 + 247518478 -------AATTGAGAGTGCAGATGTTGCGGGAGTGACCCCCTGAGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491624 39 + 131632457 -------AATTGAGAGTGCAGATGTTGCGGGAGTGACCCCCTGAGC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713571 39 + 135000294 -------AATAGAAGGTGCACATGTTGCTAGTGTGGCCTCCTGAGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675559 39 + 6458163 -------AATTGAGAGTGCAGATGTTGCGGGAGTGACCCCCTGAGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084532 38 + 106825570 -------AATTGAGAATGCAGATGTTGCTGGAGTGACC-CCTGAGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764637 39 + 158406734 -------TGTTGAGAGTGCAGAGGTTGCTGGAGTGGCCCCCTGAGC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13711 39 + 18451090 -------GATAGAAGGTGCACGTGTTGCTGGTGTGGCCTTCTGAGC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28843055 22 - 32117204 ------------------------TTGCTGTGGTGACTTCCTGAGC i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 11371 10 + 11994 CAAATTCCAT------------------------------------ i vicPac1.scaffold_13731 I 2 I 9 s canFam3.chr25 42517031 3 + 51628933 -------AAT------------------------------------ i canFam3.chr25 C 0 I 6 s ailMel1.GL192536.1 1073839 3 - 2169676 -------AAT------------------------------------ i ailMel1.GL192536.1 C 0 I 6 s equCab2.chr6 17881551 3 + 84719076 -------AAT------------------------------------ i equCab2.chr6 C 0 I 6 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314282 310 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 126916 181 + 176633 I a score=21145.000000 s mm10.chr1_GL456221_random 138099 6 + 206961 TGCAGA s rn5.chr9 92382393 6 + 121549591 TGCAGA i rn5.chr9 C 0 C 0 s hg19.chr2 231156924 6 + 243199373 CACAGG i hg19.chr2 C 0 I 2 s panTro4.chr2B 235534960 6 + 247518478 CACAGG i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119491663 6 + 131632457 CACAGG i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122713610 6 + 135000294 CACAGG i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3675598 6 + 6458163 CACAGG i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94084570 6 + 106825570 CACAGG i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146764676 6 + 158406734 CATAGG i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 13750 6 + 18451090 CACAGA i saiBol1.JH378144 C 0 I 2 s otoGar3.GL873532 28843077 5 - 32117204 TGTAG- i otoGar3.GL873532 C 0 I 5 s canFam3.chr25 42517040 4 + 51628933 TA--GA i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1073848 6 - 2169676 TACCGA i ailMel1.GL192536.1 I 6 C 0 s equCab2.chr6 17881560 6 + 84719076 CACAGA i equCab2.chr6 I 6 C 0 s myoLuc2.GL429770 26314592 6 + 30916457 CACAGA i myoLuc2.GL429770 I 310 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e vicPac1.scaffold_13731 11381 9 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 126916 181 + 176633 I a score=285.000000 s mm10.chr1_GL456221_random 138105 2 + 206961 AA s rn5.chr9 92382399 2 + 121549591 AA i rn5.chr9 C 0 C 0 s hg19.chr2 231156932 1 + 243199373 -A i hg19.chr2 I 2 I 1 s panTro4.chr2B 235534968 1 + 247518478 -A i panTro4.chr2B I 2 I 1 s gorGor3.chr2B 119491671 1 + 131632457 -A i gorGor3.chr2B I 2 I 1 s ponAbe2.chr2b 122713618 1 + 135000294 -A i ponAbe2.chr2b I 2 I 1 s nomLeu2.GL397366 3675606 1 + 6458163 -A i nomLeu2.GL397366 I 2 I 1 s rheMac3.chr12 94084578 1 + 106825570 -A i rheMac3.chr12 I 2 I 1 s calJac3.chr6 146764684 1 + 158406734 -A i calJac3.chr6 I 2 I 1 s saiBol1.JH378144 13758 1 + 18451090 -A i saiBol1.JH378144 I 2 I 1 s micMur1.scaffold_3075 127097 1 + 176633 -G i micMur1.scaffold_3075 I 181 I 77 s vicPac1.scaffold_13731 11390 1 + 11994 -T i vicPac1.scaffold_13731 I 9 C 0 s canFam3.chr25 42517044 2 + 51628933 TG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073854 2 - 2169676 TG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881566 2 + 84719076 TA i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26314598 2 + 30916457 TG i myoLuc2.GL429770 C 0 C 0 e otoGar3.GL873532 28843082 5 - 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I a score=-36350.000000 s mm10.chr1_GL456221_random 138107 5 + 206961 CCAGT------- s rn5.chr9 92382401 5 + 121549591 CCAGG------- i rn5.chr9 C 0 C 0 s hg19.chr2 231156934 5 + 243199373 CCATC------- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235534970 5 + 247518478 CCATC------- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119491673 5 + 131632457 CCATC------- i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122713620 5 + 135000294 CTATC------- i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3675608 5 + 6458163 CCATC------- i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94084580 5 + 106825570 CCATC------- i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146764686 5 + 158406734 CCATC------- i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 13760 5 + 18451090 CTATC------- i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 28843087 5 - 32117204 CCGTC------- i otoGar3.GL873532 I 5 C 0 s vicPac1.scaffold_13731 11391 9 + 11994 ---TTAAAATGT i vicPac1.scaffold_13731 C 0 I 10 s canFam3.chr25 42517046 6 + 51628933 ---TTG---GAT i canFam3.chr25 C 0 I 3 s ailMel1.GL192536.1 1073856 6 - 2169676 ---TCG---GGT i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17881568 7 + 84719076 ---TTG--CTGT i equCab2.chr6 C 0 I 3 s myoLuc2.GL429770 26314600 7 + 30916457 ---TTG--CCTT i myoLuc2.GL429770 C 0 I 3 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 127098 77 + 176633 I a score=-16675.000000 s mm10.chr1_GL456221_random 138112 7 + 206961 GGC-AGTC- s rn5.chr9 92382406 7 + 121549591 AAC-AGTT- i rn5.chr9 C 0 C 0 s hg19.chr2 231156939 7 + 243199373 TGA-GACC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534975 7 + 247518478 TGA-GACC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491678 7 + 131632457 TGA-GACC- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713625 7 + 135000294 TCA-GACT- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675613 7 + 6458163 TGA-GACC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084585 7 + 106825570 TGA-GACC- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764691 7 + 158406734 TTA-GACA- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13765 7 + 18451090 TGA-GACT- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28843092 7 - 32117204 TAA-GACC- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42517055 8 + 51628933 -AACCATTC i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1073865 7 - 2169676 -AG-GATTC i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17881578 7 + 84719076 -AC-CATTC i equCab2.chr6 I 3 C 0 s myoLuc2.GL429770 26314610 7 + 30916457 -GT-CATTG i myoLuc2.GL429770 I 3 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e vicPac1.scaffold_13731 11400 10 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 127098 77 + 176633 I a score=-13877.000000 s mm10.chr1_GL456221_random 138119 3 + 206961 TTA- s rn5.chr9 92382413 3 + 121549591 TTA- i rn5.chr9 C 0 C 0 s hg19.chr2 231156946 3 + 243199373 GTA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534982 3 + 247518478 GTA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491685 3 + 131632457 GTA- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713632 3 + 135000294 GTA- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675620 3 + 6458163 GTA- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084592 3 + 106825570 GTA- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764698 3 + 158406734 GTA- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13772 3 + 18451090 GTA- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28843099 3 - 32117204 GCA- i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_13731 11410 1 + 11994 ---A i vicPac1.scaffold_13731 I 10 I 13 s canFam3.chr25 42517063 3 + 51628933 -TAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073872 3 - 2169676 -TAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881585 3 + 84719076 -TGA i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26314617 3 + 30916457 -AGA i myoLuc2.GL429770 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 127098 77 + 176633 I a score=-49726.000000 s mm10.chr1_GL456221_random 138122 12 + 206961 --------------GTCA------------TAGC-TGCA s rn5.chr9 92382416 12 + 121549591 --------------GTTG------------AAGC-TGAA i rn5.chr9 C 0 C 0 s hg19.chr2 231156949 13 + 243199373 --------------GCCC------------CAAGTTGAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534985 13 + 247518478 --------------GCCC------------CAAGTTGAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491688 13 + 131632457 --------------GCCC------------CAAGTTGAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713635 12 + 135000294 --------------CCCC------------TAAG-TAAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675623 13 + 6458163 --------------GCCA------------CAAGTTGAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084595 13 + 106825570 --------------GCCA------------CAAGTTGAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764701 12 + 158406734 --------------GCCA------------CAAG-TTGA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13775 12 + 18451090 --------------CCTC------------TAAG-TGAG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28843102 7 - 32117204 --------------GATC------------TGA------ i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42517066 17 + 51628933 GT---------TCATTCT------------CAAGTTGA- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073875 17 - 2169676 GC---------TCAGTCT------------CAACTTGG- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881588 38 + 84719076 GCCACAGGGCACCCACCTGAGATCTGAGTGCAACTTGA- i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26314620 25 + 30916457 GCAGCAGGGC-AGGGCCT------------CCATTTCA- i myoLuc2.GL429770 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e vicPac1.scaffold_13731 11411 13 + 11994 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 127098 77 + 176633 I a score=39311.000000 s mm10.chr1_GL456221_random 138134 6 + 206961 GATTCT s rn5.chr9 92382428 6 + 121549591 GATTCC i rn5.chr9 C 0 C 0 s hg19.chr2 231156962 6 + 243199373 GATTCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235534998 6 + 247518478 GATTCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491701 6 + 131632457 GATTCT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713647 6 + 135000294 GATTCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675636 6 + 6458163 GATTCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084608 6 + 106825570 GATTCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764713 6 + 158406734 GGATCT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13787 6 + 18451090 GATTCT i saiBol1.JH378144 C 0 C 0 s vicPac1.scaffold_13731 11424 6 + 11994 GGTGCC i vicPac1.scaffold_13731 I 13 N 0 s canFam3.chr25 42517083 6 + 51628933 AGTTCT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073892 6 - 2169676 GGTTCT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881626 6 + 84719076 GGTTCT i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26314645 6 + 30916457 GATTTC i myoLuc2.GL429770 C 0 C 0 e otoGar3.GL873532 28843109 0 - 32117204 C e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 127098 77 + 176633 I a score=29032.000000 s mm10.chr1_GL456221_random 138140 11 + 206961 ACCTCC-AACTT s rn5.chr9 92382434 11 + 121549591 ACCTCC-ACCTA i rn5.chr9 C 0 C 0 s hg19.chr2 231156968 12 + 243199373 GCCTCCAACATT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535004 12 + 247518478 GCCTCCAACATT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491707 12 + 131632457 GCCTCCAACATT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713653 11 + 135000294 GCCTCC-ACATT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675642 12 + 6458163 GCCTCCAACAGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084614 12 + 106825570 GCCTCCAACATT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764719 12 + 158406734 GCCTCCAACATT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13793 11 + 18451090 GACTCC-ACATT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28843109 8 - 32117204 ----CCTGCATT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42517089 11 + 51628933 ATCTTC-ACCTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073898 11 - 2169676 ACCTTC-ACATT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881632 11 + 84719076 GCCTCC-ACATT i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26314651 3 + 30916457 ACT--------- i myoLuc2.GL429770 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 17818 255 - 513109 I e micMur1.scaffold_3075 127098 77 + 176633 I a score=10500.000000 s mm10.chr1_GL456221_random 138151 1 + 206961 G s rn5.chr9 92382445 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231156980 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535016 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491719 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713664 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675654 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084626 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764731 1 + 158406734 G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13804 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28843117 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42517100 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073909 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881643 1 + 84719076 G i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 18073 1 - 513109 G i dasNov3.JH581855 I 255 I 1154 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314654 0 + 30916457 C e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e micMur1.scaffold_3075 127098 77 + 176633 I a score=72598.000000 s mm10.chr1_GL456221_random 138152 22 + 206961 CCT---GGGGCACCTG-AGACTCTGG s rn5.chr9 92382446 17 + 121549591 CCT---GGGGCACCCA-AGAC----- i rn5.chr9 C 0 C 0 s hg19.chr2 231156981 26 + 243199373 CCCTCACAGCCATCTGGAGACTCAGG i hg19.chr2 C 0 I 1 s panTro4.chr2B 235535017 26 + 247518478 CCCTCACAGCCATCTGGAGACTCAGG i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119491720 26 + 131632457 CCCTCACAGCCATCTGGAGACTCAGG i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122713665 26 + 135000294 CCTCCAGAGCCATCTGCAGACTCAGG i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3675655 26 + 6458163 CCCTCACAGCCACCTGGAGACTCAGG i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94084627 26 + 106825570 CCCTCACAGCCATCTGGAGACTCAGG i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146764732 26 + 158406734 CCCTCAGAGCCATCTGGAGACTCAGG i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 13805 26 + 18451090 CCCCCAGAGCCATCTGCAGACGCAGG i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28843118 25 - 32117204 CCTCCA-AGCTGTCTAGAGATTCTTG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42517101 25 + 51628933 CCCCAGGAGCCA-TTGGAGATTCTGG i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1073910 25 - 2169676 CCCCAAGAGCCA-CTGGAGTCTCTGG i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17881644 26 + 84719076 CCCCCAGGGCCATCTGCAGACTGTAG i equCab2.chr6 C 0 I 1 s myoLuc2.GL429770 26314654 10 + 30916457 ---------CCA-AAGTAGA------ i myoLuc2.GL429770 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127098 77 + 176633 I a score=13369.000000 s mm10.chr1_GL456221_random 138174 2 + 206961 TT s rn5.chr9 92382463 1 + 121549591 -T i rn5.chr9 C 0 C 0 s hg19.chr2 231157008 2 + 243199373 CT i hg19.chr2 I 1 C 0 s panTro4.chr2B 235535044 2 + 247518478 CT i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119491747 2 + 131632457 CT i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122713692 2 + 135000294 CT i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3675682 2 + 6458163 CT i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94084654 2 + 106825570 CT i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146764759 2 + 158406734 CT i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 13832 2 + 18451090 CT i saiBol1.JH378144 I 1 C 0 s micMur1.scaffold_3075 127175 2 + 176633 CC i micMur1.scaffold_3075 I 77 I 107 s otoGar3.GL873532 28843143 2 - 32117204 CT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42517127 2 + 51628933 CC i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1073936 2 - 2169676 CT i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17881671 2 + 84719076 CT i equCab2.chr6 I 1 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314664 0 + 30916457 C e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I a score=50738.000000 s mm10.chr1_GL456221_random 138176 29 + 206961 GTTCTCCAGCTTGAGAGCTCAGCATCAGG s rn5.chr9 92382464 29 + 121549591 GTTCTCCAGCTTGAGAGCACAGCATCCGG i rn5.chr9 C 0 C 0 s hg19.chr2 231157010 29 + 243199373 GGCCTCTACTTCCAAATTTGAATAGCAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535046 29 + 247518478 GGCCTCTACTTCCAAATTTGAATAGCAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491749 29 + 131632457 GGCCTCTACTTCCAAATTTGAATAGCAAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713694 29 + 135000294 GGTCTCTACCCCCAGAATTCAACAGCATG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675684 29 + 6458163 GGTCTCTACTTCCAAATTTGAATAGCAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084656 29 + 106825570 GGTCTCTACTTCCAAATTTGAATAGAAAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764761 29 + 158406734 GGTCTCTACTTCCAAATTTGAATAGCAAA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13834 28 + 18451090 GGTCTCTAC-CCCAGAATCCAACAGCAAA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28843145 29 - 32117204 GATCTCTACCTCCAGAATTTAAAAGCAAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42517129 7 + 51628933 ATTCCCT---------------------- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073938 7 - 2169676 GTTCTCT---------------------- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881673 7 + 84719076 GTTCTCT---------------------- i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314664 0 + 30916457 C e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4168402 244 - 10418462 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127177 107 + 176633 I a score=17250.000000 s mm10.chr1_GL456221_random 138205 14 + 206961 CTAGACCCCAGTCA- s rn5.chr9 92382493 5 + 121549591 TTGGA---------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168646 14 - 10418462 CTAGAACCCGACAA- i speTri2.JH393335 I 244 C 0 s hg19.chr2 231157039 14 + 243199373 TTGGAGTCCTCTCA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535075 14 + 247518478 TTGGAGTCCTCTCA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491778 14 + 131632457 TTGGAGTCCTCTCA- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713723 14 + 135000294 TTGGAGTCCTCTCA- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675713 14 + 6458163 TTGGAGTCCTCTCG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084685 14 + 106825570 TTGGAATCCTCTGA- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764790 14 + 158406734 TTGGAATCCTCTTA- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13862 14 + 18451090 TTGGAATGCTCTCG- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28843174 14 - 32117204 TTGAAACCCTCTCA- i otoGar3.GL873532 C 0 I 1714 s canFam3.chr25 42517136 10 + 51628933 -----GTCCCCAGCA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073945 10 - 2169676 -----GTCCCCAGCA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881680 10 + 84719076 -----ATCCCCAGGA i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314664 0 + 30916457 C e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127177 107 + 176633 I a score=42451.000000 s mm10.chr1_GL456221_random 138219 42 + 206961 CACTGTGGACCCCAGTCAC------ACTGTGGAGTTGCTCGATGGCTT s rn5.chr9 92382498 28 + 121549591 ----------CCCAGTCAC------ACTGTGCTATTGGTC----ACTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168660 38 - 10418462 CAAATTGAAATCCTCTCAT------TCTTAGGAATTGCGT----GCGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157053 20 + 243199373 ------------------T------CTTTCAGAATCACTT----GCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535089 20 + 247518478 ------------------T------CTTTCAGAATCACTT----GCTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491792 20 + 131632457 ------------------T------CTTTCAGAATCACTT----GCTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713737 20 + 135000294 ------------------T------CTTTCAGAATCACTT----GCTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675727 20 + 6458163 ------------------T------CTTTCAGAATCACTT----GCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084699 20 + 106825570 ------------------T------CTTTCAGAATCACTT----GCTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764804 20 + 158406734 ------------------T------CTTTCGGAATCACTT----GCTT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13876 20 + 18451090 ------------------T------CTCTCAGAATCACTT----GCTT i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42517146 36 + 51628933 --AATTGAGATCCTCTCAT------GCTTCAGGTTGACTT----GCTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1073955 36 - 2169676 --ACCTGAGATCCTCTCAC------TCTTCAGGTTCACTT----GCTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881690 36 + 84719076 --AATTGAAATCCTCTCAT------CCTTCAGAATCACTT----GCTT i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26314664 33 + 30916457 -------AAATCTCCTTACATGGTATTTACAGGATGGGTT-------- i myoLuc2.GL429770 C 0 I 357 e otoGar3.GL873532 28843188 1714 - 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127177 107 + 176633 I a score=143908.000000 s mm10.chr1_GL456221_random 138261 37 + 206961 GTCTGTT-TCTTGGTGACCTTGAAGTAGTTTTAAAAG----------G s rn5.chr9 92382526 37 + 121549591 GTTTGTT-TCTTGGTGACCCTGAAGTAGTTTTAAAAG----------G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168698 47 - 10418462 TTCCTCT-TGTAGGTGATTCCTAGATATTTTTAAAAGCTTGCTTTTCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157073 35 + 243199373 TTCCTTC-TGTAAGTGCTTTTGAAATGC--TTAAAAG----------G i hg19.chr2 C 0 I 7 s panTro4.chr2B 235535109 35 + 247518478 TTCCTTC-TGTAAGTGCTTTTGAAATGC--TTAAAAG----------G i panTro4.chr2B C 0 I 7 s gorGor3.chr2B 119491812 35 + 131632457 TTCCTTC-TGTAAGTGCTTTTGAAATGC--TTAAAAG----------G i gorGor3.chr2B C 0 I 7 s ponAbe2.chr2b 122713757 36 + 135000294 TTCCTTCTTGTAAGTGCTTTTGAAATGC--TTGAAAG----------G i ponAbe2.chr2b C 0 I 7 s nomLeu2.GL397366 3675747 35 + 6458163 TTCTTTC-TGTAAGTGCTTTTGAAATGC--TTAAAAG----------G i nomLeu2.GL397366 C 0 I 7 s rheMac3.chr12 94084719 35 + 106825570 TTCCTTC-TGTAAGTGCTTTTGAAATGC--TTAAAAG----------G i rheMac3.chr12 C 0 I 7 s calJac3.chr6 146764824 35 + 158406734 TTCCTTC-TGTAAGTGCTTTTGAAACAC--TTAAAAG----------G i calJac3.chr6 C 0 I 7 s saiBol1.JH378144 13896 37 + 18451090 TTCCTTC-TGTAAGTGCTTCTGAAACACTTTTCAAAG----------G i saiBol1.JH378144 C 0 I 7 s canFam3.chr25 42517182 36 + 51628933 -TTCCTT-TGTAGATGATTTTGAAATATTTTTAAAAG----------A i canFam3.chr25 C 0 I 6 s ailMel1.GL192536.1 1073991 35 - 2169676 -TTCCTT-TGTAGATGA-TTTAAAATACTTTTAAAAG----------G i ailMel1.GL192536.1 C 0 I 10 s equCab2.chr6 17881726 36 + 84719076 -TTCCTT-CATAGTTGATTTTGAAATACTTCTAAAAG----------G i equCab2.chr6 C 0 I 10 e otoGar3.GL873532 28843188 1714 - 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127177 107 + 176633 I a score=9555.000000 s mm10.chr1_GL456221_random 138298 1 + 206961 T s rn5.chr9 92382563 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168745 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157115 1 + 243199373 T i hg19.chr2 I 7 I 3 s panTro4.chr2B 235535151 1 + 247518478 T i panTro4.chr2B I 7 I 3 s gorGor3.chr2B 119491854 1 + 131632457 T i gorGor3.chr2B I 7 I 3 s ponAbe2.chr2b 122713800 1 + 135000294 T i ponAbe2.chr2b I 7 I 3 s nomLeu2.GL397366 3675789 1 + 6458163 T i nomLeu2.GL397366 I 7 I 3 s rheMac3.chr12 94084761 1 + 106825570 T i rheMac3.chr12 I 7 I 3 s calJac3.chr6 146764866 1 + 158406734 T i calJac3.chr6 I 7 I 3 s saiBol1.JH378144 13940 1 + 18451090 T i saiBol1.JH378144 I 7 I 1 s micMur1.scaffold_3075 127284 1 + 176633 T i micMur1.scaffold_3075 I 107 I 64 s canFam3.chr25 42517224 1 + 51628933 T i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1074036 1 - 2169676 T i ailMel1.GL192536.1 I 10 C 0 s equCab2.chr6 17881772 1 + 84719076 T i equCab2.chr6 I 10 C 0 e otoGar3.GL873532 28843188 1714 - 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I a score=59338.000000 s mm10.chr1_GL456221_random 138299 18 + 206961 GGTGATTATCATCTTTTT-- s rn5.chr9 92382564 16 + 121549591 CGTGATTATCATC--TCT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168746 16 - 10418462 GGTAATTGTTACT--TTC-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157119 16 + 243199373 GATAACCATCACT--CTC-- i hg19.chr2 I 3 C 0 s panTro4.chr2B 235535155 16 + 247518478 GATAACCATCACT--CTC-- i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119491858 16 + 131632457 GATAACCATCACT--CTC-- i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122713804 16 + 135000294 GATAACCATCACT--TTC-- i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3675793 16 + 6458163 GATAACCATCACT--TTC-- i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94084765 16 + 106825570 GACAACCATCACT--TTC-- i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146764870 15 + 158406734 -ATAACTATCACT--TTC-- i calJac3.chr6 I 3 C 0 s saiBol1.JH378144 13942 15 + 18451090 -ATAACGATCACT--TAT-- i saiBol1.JH378144 I 1 C 0 s canFam3.chr25 42517225 18 + 51628933 AATAATTATCACC--TTTCT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1074037 18 - 2169676 GGTAATTATCACC--TTTTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881773 18 + 84719076 GATAATTATCACT--TTTTT i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28843188 1714 - 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127285 64 + 176633 I a score=147792.000000 s mm10.chr1_GL456221_random 138317 41 + 206961 TTCACACATGAA-CATGAAAGAAATATGCAAAGTTT--CATG-AA s rn5.chr9 92382580 42 + 121549591 TTCATGAATGAA-AATGAAAGAAATATGCAAGGTTT--CATGAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168762 41 - 10418462 TTCATGC--GAA-GATCAAAGAAATGTACACACCCTGCCAGA-AA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157135 42 + 243199373 CTCATGGATGAA-GGTCAAAGAAATGTGCACCCCCA-CCAGG-AA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535171 42 + 247518478 CTCATGGATGAA-GGTCAAAGAAATGTGCACCCCCA-CCAGG-AA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119491874 42 + 131632457 CTCATGGATGAA-GGTCAAAGAAATGTGCACCCCCA-CCAGG-AA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122713820 42 + 135000294 TTCATGGATGAA-GGTCAAAGAAATGTGCACCCCCA-CCAGG-AA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3675809 42 + 6458163 TTCATGGATGGA-GGTCAAAGAAATGTGCACCCCCA-CCAGG-AA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94084781 42 + 106825570 TTCATGGATGAA-GGTCAAAGAAATGTGCACCGCCG-CCAGG-AA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146764885 41 + 158406734 TTCATGGATGAA-AGTCAAACAAATGTGTACCCTCA--CAGG-AA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 13957 42 + 18451090 TTCATGGATAAA-GGAGGAAGAAATGTGCACCACCA-CCAGG-AA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 3130686 42 + 32117204 TTCCTGCATGAA-GGCCAGAGAAATATACACACATG-GCAAG-GA i otoGar3.GL873532 n 1714 C 0 s canFam3.chr25 42517243 41 + 51628933 --GTTGCACAAAGTTTTAAAGAAATGTTGCCACAAG-GCAGA-AA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1074055 41 - 2169676 --GTTGCACCAAGTTTTAAAGAAATGTTGCCCCAAG-GCAGG-AA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881791 40 + 84719076 --GTTGCACAAA-TGTTAAAGAAATGTTATTACAAA-GCAGG-AA i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127285 64 + 176633 I a score=3372.000000 s mm10.chr1_GL456221_random 138358 1 + 206961 G s rn5.chr9 92382622 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168803 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157177 1 + 243199373 A i hg19.chr2 C 0 I 1 s panTro4.chr2B 235535213 1 + 247518478 A i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119491916 1 + 131632457 A i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122713862 1 + 135000294 A i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3675851 1 + 6458163 A i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94084823 1 + 106825570 A i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146764926 1 + 158406734 A i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 13999 1 + 18451090 A i saiBol1.JH378144 C 0 I 1 s micMur1.scaffold_3075 127349 1 + 176633 A i micMur1.scaffold_3075 I 64 I 1158 s otoGar3.GL873532 3130728 1 + 32117204 G i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42517284 1 + 51628933 A i canFam3.chr25 C 0 I 3 s ailMel1.GL192536.1 1074096 1 - 2169676 A i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17881831 1 + 84719076 A i equCab2.chr6 C 0 I 3 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I a score=13007.000000 s mm10.chr1_GL456221_random 138359 8 + 206961 CTC--TTTAG-- s rn5.chr9 92382623 8 + 121549591 CTC--TTGAG-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168804 10 - 10418462 CTCCTTTCAG-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157179 8 + 243199373 ATC--CTTAG-- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235535215 8 + 247518478 ATC--CTTAG-- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119491918 8 + 131632457 ATC--CTTAG-- i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122713864 8 + 135000294 ATC--CTTAG-- i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3675853 8 + 6458163 ATC--CTTAG-- i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94084825 8 + 106825570 ATC--CTTAG-- i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146764928 8 + 158406734 ATC--CTTAG-- i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 14001 8 + 18451090 GTC--CTTAG-- i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 3130730 8 + 32117204 CTG--CTTCT-- i otoGar3.GL873532 I 1 I 4 s canFam3.chr25 42517288 8 + 51628933 --C--CTTTGAG i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1074100 8 - 2169676 --C--CTTTGAG i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17881835 8 + 84719076 --C--CTTTAAT i equCab2.chr6 I 3 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 57682 666 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=13745.000000 s mm10.chr1_GL456221_random 138367 2 + 206961 AG s rn5.chr9 92382631 2 + 121549591 GG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168814 2 - 10418462 GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157187 2 + 243199373 AG i hg19.chr2 C 0 I 3 s panTro4.chr2B 235535223 2 + 247518478 AG i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119491926 2 + 131632457 AG i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122713872 2 + 135000294 AG i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3675861 2 + 6458163 AG i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94084833 2 + 106825570 AG i rheMac3.chr12 C 0 I 3 s papHam1.scaffold13267 58348 2 + 66950 AG i papHam1.scaffold13267 I 666 I 373 s calJac3.chr6 146764936 2 + 158406734 AG i calJac3.chr6 C 0 I 3 s saiBol1.JH378144 14009 2 + 18451090 AG i saiBol1.JH378144 C 0 I 3 s otoGar3.GL873532 3130742 2 + 32117204 TG i otoGar3.GL873532 I 4 C 0 s canFam3.chr25 42517296 2 + 51628933 GG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1074108 2 - 2169676 GG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881843 2 + 84719076 GG i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=44287.000000 s mm10.chr1_GL456221_random 138369 16 + 206961 AACCCCAGGGTTGAG-C- s rn5.chr9 92382633 16 + 121549591 AATCCCAGGACTGAG-C- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168816 17 - 10418462 AACTTTCAGGCTGGGTT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157192 15 + 243199373 -ATTTTCAGGCTGGA-T- i hg19.chr2 I 3 I 1 s panTro4.chr2B 235535228 15 + 247518478 -ATTTTCAGGCTGGA-T- i panTro4.chr2B I 3 I 1 s gorGor3.chr2B 119491931 15 + 131632457 -ATTTTCAGGCTGGA-T- i gorGor3.chr2B I 3 I 1 s ponAbe2.chr2b 122713877 15 + 135000294 -ACTTTCAGGCTGGA-T- i ponAbe2.chr2b I 3 I 1 s nomLeu2.GL397366 3675866 15 + 6458163 -ACTTTCAGGCTGGA-T- i nomLeu2.GL397366 I 3 I 1 s rheMac3.chr12 94084838 15 + 106825570 -ACTTTCAGGCTGGA-T- i rheMac3.chr12 I 3 I 1 s calJac3.chr6 146764941 14 + 158406734 -ACTTTCAGGCTGGA--- i calJac3.chr6 I 3 I 1 s saiBol1.JH378144 14014 15 + 18451090 -ACTTTCAGGCTGGA-T- i saiBol1.JH378144 I 3 I 1 s otoGar3.GL873532 3130744 16 + 32117204 GTCTTTGAGGCTGAG-T- i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42517298 17 + 51628933 GACTTACAGTCTAGA-TT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1074110 8 - 2169676 GACTT---------A-TT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881845 17 + 84719076 GACTTAGAGGCTGGG-TT i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 58350 373 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=8281.000000 s mm10.chr1_GL456221_random 138385 1 + 206961 T s rn5.chr9 92382649 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4168833 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157208 1 + 243199373 T i hg19.chr2 I 1 C 0 s panTro4.chr2B 235535244 1 + 247518478 T i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119491947 1 + 131632457 T i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122713893 1 + 135000294 T i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3675882 1 + 6458163 T i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94084854 1 + 106825570 T i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146764956 1 + 158406734 T i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 14030 1 + 18451090 T i saiBol1.JH378144 I 1 C 0 s canFam3.chr25 42517315 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1074118 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17881862 1 + 84719076 T i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 3130760 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 58350 373 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=115857.000000 s mm10.chr1_GL456221_random 138386 24 + 206961 GGGACTCCCGAAGGCAGGCAGG-AG s rn5.chr9 92382650 24 + 121549591 GGGACTCCTGAAGCCAGGCCAG-AG i rn5.chr9 C 0 I 13 s speTri2.JH393335 4168834 24 - 10418462 GGGTCCCCTGAAATCTGAGAGG-TG i speTri2.JH393335 C 0 I 8 s hg19.chr2 231157209 24 + 243199373 GGGGCCTCTGTAGTCTGAGAGG-GA i hg19.chr2 C 0 I 15 s panTro4.chr2B 235535245 24 + 247518478 GGGGCCTCTGTAGTCTGAGAGG-GA i panTro4.chr2B C 0 I 15 s gorGor3.chr2B 119491948 24 + 131632457 GGGGCCTCTGTAGTCTGAGAGG-GA i gorGor3.chr2B C 0 I 15 s ponAbe2.chr2b 122713894 24 + 135000294 GGGGCCTCTGAAGTCTGAGAGG-GA i ponAbe2.chr2b C 0 I 15 s nomLeu2.GL397366 3675883 24 + 6458163 GGGGCCTCTGTAGTCTGAGAGG-GA i nomLeu2.GL397366 C 0 I 15 s rheMac3.chr12 94084855 24 + 106825570 GAGGCCTCTGAAGTCTGAGAGG-GA i rheMac3.chr12 C 0 I 15 s calJac3.chr6 146764957 24 + 158406734 GGGGCCTCTGAAGCTTGAGAGG-GA i calJac3.chr6 C 0 I 15 s saiBol1.JH378144 14031 24 + 18451090 GGGGCCTCTGAAATCTGAGAGG-GA i saiBol1.JH378144 C 0 I 15 s otoGar3.GL873532 3130762 24 + 32117204 GGGCACCCTAAGGTCTGAGAGG-AG i otoGar3.GL873532 I 2 n 2 s canFam3.chr25 42517316 25 + 51628933 GGGGATTCTAAAGGCTGAAAACAAG i canFam3.chr25 C 0 I 15 s ailMel1.GL192536.1 1074119 24 - 2169676 GGGGATTTCAAAGGCTGAAAAT-GG i ailMel1.GL192536.1 C 0 I 15 s equCab2.chr6 17881863 24 + 84719076 TGGAATTCTCAAGTCTGAAAGG-GG i equCab2.chr6 C 0 I 15 e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 58350 373 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=1481770.000000 s mm10.chr1_GL456221_random 138410 268 + 206961 GCTATTGACTTTCAGCAC-AGCTTTGGTGGCTCTAGATCCAGTGTGGTGGGAGATCATGAATCTGAGCCCTAGGTACAAAGCAGGCTCAGAACTAACCTATTGTGGTCTTACAGGGATATCTGTGAAGTCCATACAGTGTCAGAATGGAAACTGGTTCACACCCTCGGAATTTGAAATGATGGGAGGCTATGGAAAGTCAAAGAACTGGAAACTGAGCCTGGGCTGCCATAATTGGCCCCTGAAACTCCTGATCCAGGTATTGCAAAT---G s rn5.chr9 92382687 268 + 121549591 GCTATTGACTTTCAGCAT-AGATTTGGTGGCTCTAGATCCAGTGCGGTGGGAGATCATGAATCTGAGTCCTAGGGACAAAGCAGGCTCAGAACTAACCTCCTGTGATCTTACAGGGATATCTGTGATGTCTATACAGTGCCAGGATGGGAACTGGGTCACACCCCCTGAATTTGAAATCATGGGAGGCCATGGAAGATCAAAGAACTGGAAATTGAGTCTGCGGTGCTATAATTGGCCCCTGAAACTTCTGATCCAGGTATTGCAGAT---G i rn5.chr9 I 13 C 0 s speTri2.JH393335 4168866 251 - 10418462 GCTATTGACCTTGAGCCC-AATTTGGAT-----------------GGTGGGAGGCTGAAGTCTTAAACTTTGGGGACAAACAGAAATGGGGACCAACCTTCTCTGGTCTTACAGGAATCTCCATAAAGTGTATACTGAGTGAGACTGGAGACTGGCTCACGCCCCGTGAATTTGAAATCAAAGGAGGCTACGCAAGATCCAAGTACTGGAAACAGAGTGTGTACTGTGGCGGGCGGCCCCTGTTATGGCTGATGCAGGTATTCCGTTC---A i speTri2.JH393335 I 8 I 1 s hg19.chr2 231157248 267 + 243199373 GCTATTGATCTGCATCAC-AAATTGGGTGGCTCTAGATCCAGTGTGGTGAGTGGCCATAG-TCTGTGCGCTGGGAAAAAAGAGGGCTCAGGATCAAGTTACCCTGGTCTTACAGGAATCTTGGTGAAGTGTATACAGACTGAGGATGGAAAATGGTTCACCCCCACGGAATTTGAAATCAAAGGAGGCCATGCAAGATCAAAGAACTGGAGGCTGAGTGTGCGCTGTGGCGGGTGGCCCCTACGATGGCTGATGGAGGTATTCCAATG---A i hg19.chr2 I 15 I 1 s panTro4.chr2B 235535284 268 + 247518478 GCTATTGATCTTCATCGCAAAATTGGGTGGCTCTAGATCCAGTGTGGTGAGTGGCCACAG-TCTGTGCGCTGGGAACAAAGAGGGCTCAGGATCAAGTTACCCTGGTCTTACAGGAATCTTGGTGAAGTGTATACAGACTGAGGATGGAAAATGGTTCACCCCCACGGAATTTGAAATCAAAGGAGGCCACGCAAGATCGAAGAACTGGAGGCTGAGTGTGCGCTGTGGCGGGTGGCCCCTACGATGGCTGATGGAGGTATTCCAATG---A i panTro4.chr2B I 15 I 1 s gorGor3.chr2B 119491987 267 + 131632457 GCTATTGATCTTCATCAC-AAATTGGGTGGCTCTAGATCCAGTGTGGTGAGTGGCCACAG-TCTGTGCGCTGGGAACAAAGAGGGCTCAGGATCAAGTTACCCTGGTCTTACAGGAATCTTGGTGAAGTGTATACAGACTGAGGATGGAAAATGGTTCACCCCCACGGAATTTGAAATCAAAGGAGGCCACGCAAGATCAAAGAACTGGAGGCTGAGTGTGCGCTGTGGCGGGTGGCCCCTACGATGGCTGATGGAGGTATTCCAATG---A i gorGor3.chr2B I 15 I 1 s ponAbe2.chr2b 122713933 266 + 135000294 GCTATTGATCTTCATCAC-AGA-TGGGTGGCTCTAGATCCAATGTGGTGAGCGGCCACAG-TCTGAGTGCTGGGAACAAAGAGGGCTCAGGATCAACTTACCCTGGTCTTACAGGAACCTTCGTGAAGTGTATACAGACTGAGGATGGAAATTGGTTCACCCCCAGGAAATTTGAAATCAAAGGAGGCTACGCAAGATCAAAGAACTGGAGGCTGAGTTTGCGCTGTGGCGGGTGGCCCCTACAACGGTTGATGGAGGTATTCCAATG---A i ponAbe2.chr2b I 15 I 1 s nomLeu2.GL397366 3675922 267 + 6458163 GCTATTGATCTTCACCAC-AAATTGGGTGGCTCTAGATCCAGTGTGGTTAGTGGCCACAG-TCTGAGTGCCGGGAACAAAGAGGGCTCAGGATCAAGTTACCCTGGTCTTACAGGAATCTTGGTGAAGTGTATACAGACTGAGGATGGAAATTGGTTCACCCCCACGGAATTTGAGATCAAAGGAGGCCACGCAAGATCAAAGAACTGGAGGCTGAGTGTGCGCTGTGGCGGGTGGCCCCTACGATGGCTGATGGAGGTATTCCAAGG---A i nomLeu2.GL397366 I 15 I 1 s rheMac3.chr12 94084894 267 + 106825570 GCTATTGATCTTGATCAG-AAATTGGGTGGCTGTAGATCCAGTGTGGTGAGTGGCCACAG-TCTGAGTGCTGGGAACAAAGAGGGCTCAGAATCAACTTACCCTGGTCTTACAGGAATCTTGGTGAAGTGTATACAGAGTGAGGATGGAAATTGGTTCACCCCCAGGGAATTTGAAATCAAAGGAGGCCACGCAAGATCAAAGAACTGGAAGCTGAGTGTGCGCTGTGGCGGGTGGCCCCTACGATGGCTGATAGAGGTATTCCAATG---A i rheMac3.chr12 I 15 I 1 s calJac3.chr6 146764996 258 + 158406734 GCTGTTGATCCGGATCAC-AAATTGTGTGA--------TCAGT-TGGTGAGTGGCCACAG-TCTGAGCACTGGGAACAAAGAGAGCTCAGGATCAACTTACCCTGGTCTTACAGGAATCTTGGTGAAGTGTATACAGAGTGAGGATGGAAATTGGTTCACCCCCAGGGAATTTGAAATCAAAGGAGGCCACGCAAGATCAAAGAACTGGAGGCTGAGTGTGCGCTGTGGCGGGTGGCCCCTACGATGGCTGATGGAGGTATTCCAGTG---A i calJac3.chr6 I 15 I 1 s saiBol1.JH378144 14070 267 + 18451090 ACTGTTGATCTTGATCAC-AAATTGTGTGGTTCTAGATTCAGTGTGGTGAGCGGCTACAG-TCTGAGCACTGGGAAGAAAGAGGGCTCAGGATCAACTTACCCTGGTCTTACAGGAATCTTGATGAAGTGTATACAGACTGAGGATGGAAACTGGCTCAGCCTCAGGGAATTTGCAATCAAAGGAGGCTACGCAAGAACAAAGAACTGGAAGCTGAGTGTGCGCTGTTATGGGTGGCCCCTACAACGGCTGATGGAGGTATTCCAGTG---A i saiBol1.JH378144 I 15 I 1 s canFam3.chr25 42517356 266 + 51628933 GCTAAAAATCTTGAGCTC-AAATTGGGTGGCTCCAGATGCATTGTGGTGGGAGCCCATCA-TCTGTGTTCTGAAGACTAAGAAGGCTCAGGCTCAACTTACCTTGTTCTTACAGGAGTCTTGGTGAGATGTATACAGAGTGAGGATGGAAATTGGTTCACCCCCAGGGAATTTGAAGTCAAAGGAGGCCACGCAAGATCAAAGAACTGGAGGATGAGCGTTCGCTGTGGTGGGATGCCCCTACGATGGCTGATAGAGGTATTGCAAGG---- i canFam3.chr25 I 15 C 0 s ailMel1.GL192536.1 1074158 266 - 2169676 GCTAAAAATCTTGAACCC-AAATTGGGTGGCTCCAGAGGCATTGTGGTGGGAGCCCATCA-TCTGAGTTCTGAAGACAAAGACGGCTCAGGCTCAACTTACCCTGGTCTTACAGGAGTCTTGGAGAGGTGTATACAGAGTGAGGATGGACAATGGTTCACCCCCAAGGAATTTGAAGTCAGAGGAGGCCACGCAAGATCAAAGAACTGGAAGCTGAGTGTGCGCTGTGGTGGAAGGCCTCTACGATGGCTGATGGAGGTATTTCAAGG---- i ailMel1.GL192536.1 I 15 C 0 s equCab2.chr6 17881902 264 + 84719076 GCTTTTGATCTCGAGCCC-AAATTGGGTGTCTCCAGA-----TCTGGTATAAGGCCACTG-TCTGAGTTCTGAGAACCAAGAATGCTCAGGATCAACTTACCCTGGTCTTACAGGAGCCTTGGTGAAGAGCATACAGCGTGAAGATGGAAACTGGCTGACTCCCAGGGAATTTGAAGTCAATGGAGGCTTCGCAAGATCAAAGAACTGGAAGCTGAGTGTACGCTGTGGTGGGAGGCCCCTACGATGGCTGATGGAGGTATTCCAGTGACA- i equCab2.chr6 I 15 C 0 e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 58350 373 + 66950 I e felCat5.chrC1 212440469 964 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=16145.000000 s mm10.chr1_GL456221_random 138678 4 + 206961 AGGA s rn5.chr9 92382955 4 + 121549591 AGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169118 4 - 10418462 AAGG i speTri2.JH393335 I 1 C 0 s hg19.chr2 231157516 4 + 243199373 AAGG i hg19.chr2 I 1 C 0 s panTro4.chr2B 235535553 4 + 247518478 AAGG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119492255 4 + 131632457 AAGG i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122714200 4 + 135000294 AAGG i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3676190 4 + 6458163 AAGG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94085162 4 + 106825570 AAGG i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146765255 4 + 158406734 AAGG i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 14338 4 + 18451090 AAGG i saiBol1.JH378144 I 1 C 0 s felCat5.chrC1 212441433 2 + 221441202 --GA i felCat5.chrC1 I 964 I 14 s canFam3.chr25 42517622 1 + 51628933 ---A i canFam3.chr25 C 0 I 3 s ailMel1.GL192536.1 1074424 1 - 2169676 ---A i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17882166 4 + 84719076 GGGG i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 58350 373 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-19780.000000 s mm10.chr1_GL456221_random 138682 3 + 206961 --GAG s rn5.chr9 92382959 3 + 121549591 --GAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169122 3 - 10418462 --GCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157520 1 + 243199373 --G-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535557 1 + 247518478 --G-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119492259 1 + 131632457 --G-- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122714204 1 + 135000294 --G-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676194 1 + 6458163 --G-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085166 1 + 106825570 --G-- i rheMac3.chr12 C 0 I 41 s calJac3.chr6 146765259 1 + 158406734 --G-- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 14342 1 + 18451090 --G-- i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42517626 2 + 51628933 -AA-- i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1074428 2 - 2169676 -GA-- i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17882170 3 + 84719076 CTG-- i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 58350 373 + 66950 I e felCat5.chrC1 212441435 14 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=6228.000000 s mm10.chr1_GL456221_random 138685 1 + 206961 G s rn5.chr9 92382962 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169125 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157521 1 + 243199373 G i hg19.chr2 C 0 I 1 s panTro4.chr2B 235535558 1 + 247518478 G i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119492260 1 + 131632457 G i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122714205 1 + 135000294 G i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3676195 1 + 6458163 G i nomLeu2.GL397366 C 0 I 1 s calJac3.chr6 146765260 1 + 158406734 G i calJac3.chr6 C 0 I 36 s saiBol1.JH378144 14343 1 + 18451090 G i saiBol1.JH378144 C 0 I 1506 s canFam3.chr25 42517628 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1074430 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882173 1 + 84719076 G i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e rheMac3.chr12 94085167 41 + 106825570 I e papHam1.scaffold13267 58350 373 + 66950 I e felCat5.chrC1 212441435 14 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=13207.000000 s mm10.chr1_GL456221_random 138686 8 + 206961 AAGGTCAG s rn5.chr9 92382963 8 + 121549591 GAGGTCAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169126 8 - 10418462 GAGGTGGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157523 8 + 243199373 CAGGCCTG i hg19.chr2 I 1 C 0 s panTro4.chr2B 235535560 8 + 247518478 CAGACCTG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119492262 8 + 131632457 CAGACTTG i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122714207 8 + 135000294 CAGACCTG i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3676197 8 + 6458163 CAGACCTG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94085208 8 + 106825570 CTGTACTG i rheMac3.chr12 I 41 C 0 s calJac3.chr6 146765297 8 + 158406734 GAGGTCAC i calJac3.chr6 I 36 C 0 s canFam3.chr25 42517629 8 + 51628933 CAGATGTG i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1074431 8 - 2169676 CAGATGCG i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17882174 8 + 84719076 GAGATCTG i equCab2.chr6 C 0 I 8 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 58350 373 + 66950 I e felCat5.chrC1 212441435 14 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=4433.000000 s mm10.chr1_GL456221_random 138694 6 + 206961 TGCTTC s rn5.chr9 92382971 6 + 121549591 TCCTTC i rn5.chr9 C 0 I 16 s speTri2.JH393335 4169134 6 - 10418462 CCCCTC i speTri2.JH393335 C 0 I 33 s hg19.chr2 231157531 6 + 243199373 TGTTCC i hg19.chr2 C 0 I 22 s panTro4.chr2B 235535568 6 + 247518478 TGTCCC i panTro4.chr2B C 0 I 22 s gorGor3.chr2B 119492270 6 + 131632457 TGTCCC i gorGor3.chr2B C 0 I 22 s ponAbe2.chr2b 122714215 6 + 135000294 TGCCCC i ponAbe2.chr2b C 0 I 25 s nomLeu2.GL397366 3676205 6 + 6458163 CGTCCC i nomLeu2.GL397366 C 0 I 22 s rheMac3.chr12 94085216 1 + 106825570 T----- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146765305 6 + 158406734 TGTTTA i calJac3.chr6 C 0 I 5 s felCat5.chrC1 212441449 6 + 221441202 CTTTCC i felCat5.chrC1 I 14 C 0 s canFam3.chr25 42517638 6 + 51628933 CTTTCC i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1074440 6 - 2169676 CTTTCC i ailMel1.GL192536.1 I 1 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e equCab2.chr6 17882182 8 + 84719076 I e papHam1.scaffold13267 58350 373 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-39932.000000 s mm10.chr1_GL456221_random 138700 9 + 206961 -----AGATCAAAT s rn5.chr9 92382993 9 + 121549591 -----AGATCAAAT i rn5.chr9 I 16 C 0 s speTri2.JH393335 4169173 9 - 10418462 -----TCATCAAAT i speTri2.JH393335 I 33 C 0 s hg19.chr2 231157559 4 + 243199373 ----------AGAC i hg19.chr2 I 22 C 0 s panTro4.chr2B 235535596 4 + 247518478 ----------AGAC i panTro4.chr2B I 22 C 0 s gorGor3.chr2B 119492298 4 + 131632457 ----------AGAC i gorGor3.chr2B I 22 C 0 s ponAbe2.chr2b 122714246 4 + 135000294 ----------AGAT i ponAbe2.chr2b I 25 C 0 s nomLeu2.GL397366 3676233 4 + 6458163 ----------AGAC i nomLeu2.GL397366 I 22 C 0 s papHam1.scaffold13267 58723 4 + 66950 ----------AGAC i papHam1.scaffold13267 I 373 C 0 s calJac3.chr6 146765316 4 + 158406734 ----------CAAA i calJac3.chr6 I 5 C 0 s felCat5.chrC1 212441455 9 + 221441202 ATGTTGTAT----- i felCat5.chrC1 C 0 I 675 s canFam3.chr25 42517644 8 + 51628933 TTA-TGTAT----- i canFam3.chr25 C 0 I 11 s ailMel1.GL192536.1 1074446 9 - 2169676 TTGTTGTGT----- i ailMel1.GL192536.1 C 0 I 11 s equCab2.chr6 17882190 8 + 84719076 -TGCTGCAT----- i equCab2.chr6 I 8 I 22 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e rheMac3.chr12 94085217 0 + 106825570 C e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-4655.000000 s mm10.chr1_GL456221_random 138709 4 + 206961 AGCC- s rn5.chr9 92383002 4 + 121549591 AGGT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169182 3 - 10418462 -GTT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157563 4 + 243199373 TGTT- i hg19.chr2 C 0 I 16 s panTro4.chr2B 235535600 4 + 247518478 TGTT- i panTro4.chr2B C 0 I 16 s gorGor3.chr2B 119492302 4 + 131632457 TGTT- i gorGor3.chr2B C 0 I 16 s ponAbe2.chr2b 122714250 4 + 135000294 TGTT- i ponAbe2.chr2b C 0 I 16 s nomLeu2.GL397366 3676237 4 + 6458163 TGTT- i nomLeu2.GL397366 C 0 I 16 s rheMac3.chr12 94085217 1 + 106825570 ---T- i rheMac3.chr12 C 0 I 16 s papHam1.scaffold13267 58727 4 + 66950 TGTT- i papHam1.scaffold13267 C 0 I 666 s calJac3.chr6 146765320 4 + 158406734 TGTG- i calJac3.chr6 C 0 I 1 s canFam3.chr25 42517663 4 + 51628933 -GCTC i canFam3.chr25 I 11 C 0 s ailMel1.GL192536.1 1074466 4 - 2169676 -GCTC i ailMel1.GL192536.1 I 11 C 0 s equCab2.chr6 17882220 4 + 84719076 -GCTC i equCab2.chr6 I 22 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=23908.000000 s mm10.chr1_GL456221_random 138713 7 + 206961 ATTGAGT s rn5.chr9 92383006 7 + 121549591 ATTGAGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169185 7 - 10418462 TGTGAGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157583 7 + 243199373 GTTAGGT i hg19.chr2 I 16 C 0 s panTro4.chr2B 235535620 7 + 247518478 GTTAGGT i panTro4.chr2B I 16 C 0 s gorGor3.chr2B 119492322 7 + 131632457 GTTAGGT i gorGor3.chr2B I 16 C 0 s ponAbe2.chr2b 122714270 7 + 135000294 GTTAGGT i ponAbe2.chr2b I 16 C 0 s nomLeu2.GL397366 3676257 7 + 6458163 GTTAGGT i nomLeu2.GL397366 I 16 C 0 s rheMac3.chr12 94085234 7 + 106825570 GTTAGGT i rheMac3.chr12 I 16 C 0 s calJac3.chr6 146765325 7 + 158406734 GTTAGGT i calJac3.chr6 I 1 C 0 s canFam3.chr25 42517667 7 + 51628933 ACCAAGT i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1074470 7 - 2169676 ACCAAAT i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17882224 7 + 84719076 ACTAAAT i equCab2.chr6 C 0 I 1 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 21333 667 - 63237 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-5262.000000 s mm10.chr1_GL456221_random 138720 6 + 206961 TATGG------------G s rn5.chr9 92383013 6 + 121549591 TATGG------------G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169192 6 - 10418462 TATAG------------A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157590 5 + 243199373 TATAG------------- i hg19.chr2 C 0 I 22 s panTro4.chr2B 235535627 5 + 247518478 TATAG------------- i panTro4.chr2B C 0 I 22 s gorGor3.chr2B 119492329 5 + 131632457 TATAG------------- i gorGor3.chr2B C 0 I 22 s ponAbe2.chr2b 122714277 5 + 135000294 TATAG------------- i ponAbe2.chr2b C 0 I 22 s nomLeu2.GL397366 3676264 5 + 6458163 TATAG------------- i nomLeu2.GL397366 C 0 I 22 s rheMac3.chr12 94085241 5 + 106825570 TATTG------------- i rheMac3.chr12 C 0 I 22 s calJac3.chr6 146765332 5 + 158406734 CATAG------------- i calJac3.chr6 C 0 I 22 s turTru2.JH486691 22000 17 - 63237 TATGGCTAAAGCCCAGA- i turTru2.JH486691 I 667 I 640 s canFam3.chr25 42517675 5 + 51628933 TTTGT------------- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1074478 5 - 2169676 TTTGT------------- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17882232 5 + 84719076 TTTGT------------- i equCab2.chr6 I 1 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-433.000000 s mm10.chr1_GL456221_random 138726 1 + 206961 G s rn5.chr9 92383019 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169198 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s canFam3.chr25 42517680 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1074483 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882237 1 + 84719076 T i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714282 22 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26314697 357 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085246 22 + 106825570 I e nomLeu2.GL397366 3676269 22 + 6458163 I e gorGor3.chr2B 119492334 22 + 131632457 I e panTro4.chr2B 235535632 22 + 247518478 I e hg19.chr2 231157595 22 + 243199373 I e calJac3.chr6 146765337 22 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=781.000000 s mm10.chr1_GL456221_random 138727 1 + 206961 G s rn5.chr9 92383020 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169199 1 - 10418462 A i speTri2.JH393335 C 0 I 1 s canFam3.chr25 42517681 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1074484 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882238 1 + 84719076 G i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26315054 1 + 30916457 G i myoLuc2.GL429770 I 357 I 12 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714282 22 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085246 22 + 106825570 I e nomLeu2.GL397366 3676269 22 + 6458163 I e gorGor3.chr2B 119492334 22 + 131632457 I e panTro4.chr2B 235535632 22 + 247518478 I e hg19.chr2 231157595 22 + 243199373 I e calJac3.chr6 146765337 22 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-9802.000000 s mm10.chr1_GL456221_random 138728 9 + 206961 AGTT---------ATGG-G s rn5.chr9 92383021 18 + 121549591 AGCCCAGATACCAGTTA-G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169201 18 - 10418462 AGCCCTGATTACTCTGC-A i speTri2.JH393335 I 1 C 0 s canFam3.chr25 42517682 9 + 51628933 AGTT---------ATGAC- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1074485 9 - 2169676 ACTT---------ATAGC- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882239 9 + 84719076 AGTT---------ATAGC- i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714282 22 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315055 12 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085246 22 + 106825570 I e nomLeu2.GL397366 3676269 22 + 6458163 I e gorGor3.chr2B 119492334 22 + 131632457 I e panTro4.chr2B 235535632 22 + 247518478 I e hg19.chr2 231157595 22 + 243199373 I e calJac3.chr6 146765337 22 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-52.000000 s mm10.chr1_GL456221_random 138737 1 + 206961 G s rn5.chr9 92383039 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169219 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157617 1 + 243199373 T i hg19.chr2 I 22 C 0 s panTro4.chr2B 235535654 1 + 247518478 T i panTro4.chr2B I 22 C 0 s gorGor3.chr2B 119492356 1 + 131632457 T i gorGor3.chr2B I 22 C 0 s ponAbe2.chr2b 122714304 1 + 135000294 T i ponAbe2.chr2b I 22 C 0 s nomLeu2.GL397366 3676291 1 + 6458163 T i nomLeu2.GL397366 I 22 C 0 s rheMac3.chr12 94085268 1 + 106825570 T i rheMac3.chr12 I 22 C 0 s calJac3.chr6 146765359 1 + 158406734 T i calJac3.chr6 I 22 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517691 0 + 51628933 C e ailMel1.GL192536.1 1074494 0 - 2169676 C e proCap1.scaffold_27553 8746 2163 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315055 12 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e equCab2.chr6 17882248 0 + 84719076 C e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-9369.000000 s mm10.chr1_GL456221_random 138738 3 + 206961 AAG-- s rn5.chr9 92383040 3 + 121549591 TTT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169220 3 - 10418462 TTT-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157618 3 + 243199373 TTA-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535655 3 + 247518478 TTA-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119492357 3 + 131632457 TTA-- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122714305 3 + 135000294 TTA-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676292 3 + 6458163 TTA-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085269 3 + 106825570 TCT-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146765360 3 + 158406734 TGA-- i calJac3.chr6 C 0 C 0 s canFam3.chr25 42517691 3 + 51628933 TAA-- i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1074494 2 - 2169676 T-A-- i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17882248 3 + 84719076 TGA-- i equCab2.chr6 C 0 I 2 s proCap1.scaffold_27553 10909 3 + 24860 --AAG i proCap1.scaffold_27553 I 2163 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315055 12 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=9322.000000 s mm10.chr1_GL456221_random 138741 9 + 206961 TTCTGAGAC s rn5.chr9 92383043 9 + 121549591 TCCTGTCAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169223 9 - 10418462 TCCTTTGAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157621 9 + 243199373 TCCTCTCAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535658 9 + 247518478 TCCTCTCAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119492360 9 + 131632457 TCCTCTCAC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122714308 9 + 135000294 TCCTCTCAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676295 9 + 6458163 TCCTTTCTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085272 5 + 106825570 TCCT----C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146765363 9 + 158406734 TCCTTTCAC i calJac3.chr6 C 0 C 0 s canFam3.chr25 42517696 7 + 51628933 --ACCTGAT i canFam3.chr25 I 2 I 20 s ailMel1.GL192536.1 1074498 7 - 2169676 --ACCTGAT i ailMel1.GL192536.1 I 2 I 20 s equCab2.chr6 17882253 7 + 84719076 --CTTTGAT i equCab2.chr6 I 2 I 20 s myoLuc2.GL429770 26315067 7 + 30916457 --CCCTAAC i myoLuc2.GL429770 I 12 I 626 s proCap1.scaffold_27553 10912 6 + 24860 -TTTTTC-- i proCap1.scaffold_27553 C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=13201.000000 s mm10.chr1_GL456221_random 138750 4 + 206961 TTCA s rn5.chr9 92383052 3 + 121549591 -TCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169232 3 - 10418462 -TCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231157630 3 + 243199373 -TCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535667 3 + 247518478 -TCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119492369 3 + 131632457 -TCA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122714317 3 + 135000294 -TCA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676304 3 + 6458163 -TCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085277 3 + 106825570 -TCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146765372 3 + 158406734 -TCA i calJac3.chr6 C 0 C 0 s canFam3.chr25 42517723 4 + 51628933 ACCC i canFam3.chr25 I 20 C 0 s ailMel1.GL192536.1 1074525 4 - 2169676 ACCC i ailMel1.GL192536.1 I 20 C 0 s equCab2.chr6 17882280 4 + 84719076 ACCC i equCab2.chr6 I 20 C 0 s proCap1.scaffold_27553 10918 4 + 24860 TTCA i proCap1.scaffold_27553 C 0 I 2147 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=649044.000000 s mm10.chr1_GL456221_random 138754 186 + 206961 GGAGAGAGACACCCCTCATTCACAGCCTCATGGAAGGTAC-ACCCTTGGTGGTATTG-ACAA-----------ATGAGAGATACAGAACCTCTGAGGTGGGAATGGTCATTTTGAATAGGGGTGTTTGCAGAGAAATTTCTGCCTGAAGCCCAAGTAA--GAGTTGACTGTCAAACAAGT----GGGAGACAGTCTAGGGCAAAG s rn5.chr9 92383055 156 + 121549591 GGAGAGAGGCATCTCTCATTCAGAACCTCATCGGAGGCAT-GCCCTTGGTGGTATTG-ACAA-----------ATGGGAGATACAGAACCTCTGAGGAGGGAATGGTCATTCTGAATAGGGATT------------TTTCTGCCTGAGGTCAAAG--------------------AAAAT----GGAAAATAGTCTAGAGCAAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169235 181 - 10418462 -AAGCCAGGGGTCCCACATTTGTAACTCCA-GGATGGTACAGCACATG--AATGTTG--CAA-----------AGGGTAGATGCAGAACCTTAGAGGAGGGAGTGGCCATTCCAATTAGAG-TAAATGCAGAAAC-TTTCTGTGTTTAAAAAAAA-AA--AAGTCTACAGTCAAACAATGC--AAGAAGACACTCCAGAGAAAGG i speTri2.JH393335 C 0 I 285 s hg19.chr2 231157633 198 + 243199373 GGAGAGAGGGACCCCACATTCATAACCACA-CTACAGTGCAACACATT--GACGTTGTACCAGGGGCTCCGTCAGGATAGACTCAGCAGCTTGGAGGAGGAAAGGGTCATTCTGACTAGGG-TGCATGCAGACAGCTTTGTGCACTGAAAGAAAG-AAGGGAGTTGACAGTCAAGCAGTGG--AAGAAGACACTTCAGAGAAAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535670 198 + 247518478 GGAGAGAGGGACCCCACATTCATAACCACA-CTACAGTGCAACACATT--GACGTTGTACCAGGGGCTCCGTCAGGATAGACTCAGCAGCTTGGAGGAGGAAAGGGTCATTCTGACTAGGG-TGCATGCAGACAGCTTTGTGCACTGAAAGAAAG-AAGGGAGTTGACAGTCAAGCAGTGG--AAGAAGACACTTCAGAGAAAGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119492372 198 + 131632457 GGAGAGAGGGACCCCACATTCATAACCACA-CTACAGTGCAACACATT--GACGTTGTACCAGGGGCTCCGTCAGGATAGACTCAGCAGCTTGGAGGAGGAAAGGGTCATTCTGACTAGGG-TGCATGCAGACAGCTTTGTGCACTGAAAGAAAG-AAGGGAGTTGACAGTCAAGCAGTGG--AAGAAGACACTTCAGAGAAAGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122714320 197 + 135000294 GGAGAGAGGGACCCCATATCCATAACCACA-CTACACTGCAACACACT--GATGTTGTACCAGGGGCTCCGTCAGGATAGACTCAGCAGCTTGGAGGAGGAAAGGGTCATTCTGGCTAGGG-T-CATGCGGACAATTTTGTGCACTGAGAAAAAG-AAGAGAGTCAATAGTCAAGCAGGGC--AAGAAGACACTTCAGAGAAAGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3676307 198 + 6458163 GAAGAAAGGGACCCCACATTCATAACCACA-CTACAGTGCAACACATT--GATGTTGTCCCAGGGGCTCCGTCAGGATAGACTCAGCAGCTTGGAGGAGGAAAGGGTCGTTCTGACTGGGG-TGCATGCAGACAGCTTTGTACACTGAAAGAAAG-AAAGGAGTTGACAGTCAAGCAGTGG--AAGAAGACACTTCAGAGAAAGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085280 198 + 106825570 GGAGAGAGGGACCCCATATCCGTAACCACA-CTACAGTGCAACACATC--CATGTTGTACCAGGGGCTCCATCAGGATAGGCTCAGCAGCTTGAAGGAGGAAAGGGTCATTCTGACTAGGG-TGCATGCAGACAGCTTTGTGCACTGAAAGAAGG-AAAGGAGTTGATAGTCAAGCAGTGG--AAGAAGACACTTCAGAGAAAGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146765375 198 + 158406734 GGAGAGAGGGACTCCACATTCATAACCACA-CTCCAGTGCAGCACATC--CATGTTGTACCAGGAACTCCATCGGGATAGACACAGCACCTTGGAGGAGGGAAGGGTCACTCTGACTAGAG-TACATGCAGACAGCTTTGTGCACTGAAAGAAAG-AAGAGAGTCGATAGTCAAGCAGTGG--AGGAAGACACTTCAGAGAAAGA i calJac3.chr6 C 0 C 0 s canFam3.chr25 42517727 196 + 51628933 AGGGAGAGATGCACCACATTCATAACTTTC-CTAATATGTCACACATT--GATGTTGTAAAGGGAGCTCTGTGTAGATAGAGGTTGGAGCTTGGAGGAGGGAGAAGCCATTATGACTCAGG-TGCATGCAGACTACATCCTGCACTGAAAGAAGA-C----AGTCTACATTCAGACAAATGGAAAGAGGATACTCCAGAGAAAGA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1074529 196 - 2169676 AGGGAGAGATGTCCCACATTCATAACCTCC-CTAAAATGTTGCACATT--AATGTTGTAAAAGGGGTTCTGTCTGGTTAGAGGCCTGAGCTTGGAGGGGGAAGAGGTCATAGTGACTCAGG-TGCATGTAGACAACTTCATGCACTGAAAGAAGA-C----AGTCTACAGTCAAACAAATGGAAAGAGGTTACTCCAGAGAAAGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882284 197 + 84719076 AGGGAGAGGTGTCCCACATGCATAACCTCA-GTACAATGCATCACTTC--AGTGTGGTACAAGGGGCTCTGTCAGGGTAGATGCAGGAGCTTGGAGGAGGGAAAGGTCATTCTGACTAAGG-TGAATGCAGACAACTTTATGCAGTGAAAGAAGA-A---GACTGTACAGTCAAACAAGAGGAAAAAAGACACTTCAGAGAAAGA i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=19515.000000 s mm10.chr1_GL456221_random 138940 5 + 206961 AGGAC s rn5.chr9 92383211 5 + 121549591 AGAGC i rn5.chr9 C 0 C 0 s hg19.chr2 231157831 5 + 243199373 ATGGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535868 5 + 247518478 ATGGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119492570 5 + 131632457 ATGGC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122714517 5 + 135000294 ATGAC i ponAbe2.chr2b C 0 I 440 s nomLeu2.GL397366 3676505 5 + 6458163 ATGGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085478 5 + 106825570 ATGGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146765573 5 + 158406734 ATGGC i calJac3.chr6 C 0 C 0 s canFam3.chr25 42517923 5 + 51628933 ATGGC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1074725 5 - 2169676 AAGGC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882481 5 + 84719076 ATGAC i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=10010.000000 s mm10.chr1_GL456221_random 138945 2 + 206961 AT s rn5.chr9 92383216 2 + 121549591 AT i rn5.chr9 C 0 C 0 s hg19.chr2 231157836 2 + 243199373 AT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235535873 2 + 247518478 AT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119492575 2 + 131632457 AT i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3676510 2 + 6458163 AT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94085483 2 + 106825570 AT i rheMac3.chr12 C 0 I 732 s calJac3.chr6 146765578 2 + 158406734 AT i calJac3.chr6 C 0 C 0 s canFam3.chr25 42517928 2 + 51628933 AT i canFam3.chr25 C 0 I 4 s ailMel1.GL192536.1 1074730 2 - 2169676 AT i ailMel1.GL192536.1 C 0 I 424 s equCab2.chr6 17882486 2 + 84719076 AT i equCab2.chr6 C 0 I 343 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-6037.000000 s mm10.chr1_GL456221_random 138947 4 + 206961 -TCAA s rn5.chr9 92383218 4 + 121549591 -TCGG i rn5.chr9 C 0 C 0 s hg19.chr2 231157838 2 + 243199373 ---AA i hg19.chr2 C 0 I 2 s panTro4.chr2B 235535875 2 + 247518478 ---AA i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119492577 2 + 131632457 ---AA i gorGor3.chr2B C 0 I 2 s nomLeu2.GL397366 3676512 2 + 6458163 ---AA i nomLeu2.GL397366 C 0 I 2 s calJac3.chr6 146765580 2 + 158406734 ---AC i calJac3.chr6 C 0 I 2 s canFam3.chr25 42517934 4 + 51628933 TCCA- i canFam3.chr25 I 4 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=2100.000000 s mm10.chr1_GL456221_random 138951 1 + 206961 g s hg19.chr2 231157842 1 + 243199373 G i hg19.chr2 I 2 C 0 s panTro4.chr2B 235535879 1 + 247518478 G i panTro4.chr2B I 2 I 696 s gorGor3.chr2B 119492581 1 + 131632457 G i gorGor3.chr2B I 2 I 738 s nomLeu2.GL397366 3676516 1 + 6458163 G i nomLeu2.GL397366 I 2 I 695 s calJac3.chr6 146765584 1 + 158406734 G i calJac3.chr6 I 2 I 685 s canFam3.chr25 42517938 1 + 51628933 G i canFam3.chr25 C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I e rn5.chr9 92383222 0 + 121549591 C a score=311.000000 s mm10.chr1_GL456221_random 138952 22 + 206961 ggctggag---agatggctcagtgg s canFam3.chr25 42517939 25 + 51628933 AACCATAGCTAAAGTAGCTCTGTGG i canFam3.chr25 C 0 I 389 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e hg19.chr2 231157843 0 + 243199373 C e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I e rn5.chr9 92383222 0 + 121549591 C a score=-2457.000000 s mm10.chr1_GL456221_random 138974 84 + 206961 ttaagagcactgaaaacagctacagtgtgctcatataaatataactaataaatcttaaaaaaaaaagaaTAAGGA---CATTCAAA-C s hg19.chr2 231157843 19 + 243199373 ---------------------------------------------------------------------CCAGAATGCCATGAAAACC i hg19.chr2 C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I e rn5.chr9 92383222 0 + 121549591 C a score=5161.000000 s mm10.chr1_GL456221_random 139058 75 + 206961 AGAGTTCCAACGAGGGCCCCTGTGAAGATATAGGCAGTGCGCTGTGTG-----TTTGGCATAACCCATCCTTTAAGGTTt s rn5.chr9 92383222 74 + 121549591 AGAGTTCCAATGAGGGCACCTGTG-TGATGTAGGGGGTGCACTTTGTG-----TTTGGCATAACCCATCCTTTGAGGTTt i rn5.chr9 C 0 C 0 s hg19.chr2 231157862 73 + 243199373 AGAACCATGGCAAAAGTAGCTCTGTGGATTTAGGTAGCACAGGTTGTGTGCAATTAGGTATAATTTAACAATT------- i hg19.chr2 C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=27122.000000 s mm10.chr1_GL456221_random 139133 401 + 206961 gtaaatgtagcttttatttgcttgaagtaatt-tcatctccgaggtttactgcctctgatgctaacctaagcctaggcctagaaacttctagcctctgtacaatcttgtctaggcctggaatgtgttcagcctctgaggcttactgctgattaagctcatcctttctactgctttctgaact----gtggttggttcaactcagctgttctggctcaaagtcctgttcaagctggctgattcaatctggcttatctcagtttctcctgaattgttctgcttggcctcatgctaactttggcaatctgttctaatctt---gctccttctcattctctggcgcattctgtcctcacctgtgactggcttgttctctcttcaactggtgtctgtaaagctctcctggtaga s rn5.chr9 92383296 409 + 121549591 gtaaatatagcttttattcatctgaagtaattgtaatttctgagttgtgttgcctccaatgctaatctaggcctaggcctagaaatgtccagccactgtacaatcttatctaggcctggaatgttttcagcctctgagacttactgttgaataagctcatcctttctagtactttctgaactctggctggctggttcatctcagctgttttggctctaagtcctttccaatctgactgtttcaatctggtttctctcagtttcttctgaattgctctgcttggcctcataatacctttggcaatctgttctgttcttctggccccttctcattctctggcccattctgtcttcacctgtgtctagcttgttttctcttcaacctgtctctgtaaaactttgctggtaaa i rn5.chr9 C 0 I 181 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e hg19.chr2 231157935 0 + 243199373 C e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=22724.000000 s mm10.chr1_GL456221_random 139534 353 + 206961 actgcctccttctcttttgttttcctctcactgcactgccccttaagtagctccccttccctctctcttctcctgagagctgggcagatcctattctgtcacatctttttctgatttgtcactttatctgccactcaattagacatcactttcaaacactgttgcttccttctacaatctaacttcaccttcactgtttgggattaaaggtgcatactaagggtatatctgtattctagccagagggatt-aaagtgtgtcctaagagctgagccacactagaactagaaacaagtttttttcagtaaataacacaatcccagggttcacagtgttaacaaatatcctgcaaca s rn5.chr9 92383886 349 + 121549591 actctctctctctctctc-tctccctctTCTtgtgctgccctgtaaatagtttcccttttctctctctaccc---agagttgagcatatcctattctatcacatctttttctgattcatcactttgtctgccgctcaattagacttgactttcaaacactggtgcttccttttacaaactcacttcaccttcattgtttgtgactaaaggtgagtactaagggcctatctatattccaatcagagtgattgaaagtgtgccctaaaatctgagccacactacaactagaaacaggtttttt-cagtaaataacacaatctcagggttcacagtgttatcaaatatcctgcaaca i rn5.chr9 I 181 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e hg19.chr2 231157935 0 + 243199373 C e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=10536.000000 s mm10.chr1_GL456221_random 139887 101 + 206961 GAGGTTGTTGGTGCAGGATTTAATTAATGCCACTGTAATTACCCCAAATCCAAAATTCAG---ACAAGAAATCAGTTATATCCTTGAAG-TTAGAAATGGCAGTT s rn5.chr9 92384235 98 + 121549591 AAAGTTGTAGGTGTAGGGATT---TAATTCCACCCAAATTACCCCAAATTCAAAATTCAG---ACAAGAAATCAATGATGTCCTTGAAG-TTAGAAATAGCAGTT i rn5.chr9 C 0 C 0 s hg19.chr2 231157935 102 + 243199373 GGGGCAGGTTGTGCAGGGCTT---TAATGCCAGGCTAAGGAGTTTAAACCTGTAATTGAGATAACAAGGATTCAGTGAAATCTTCTAGGATTGGAAATGACATTT i hg19.chr2 C 0 I 317 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-1041.000000 s mm10.chr1_GL456221_random 139988 20 + 206961 GA----------------------------------------------------------------------------AGACAAAACATCTTGGCA s rn5.chr9 92384333 96 + 121549591 GAGCTCTTGCCCTGAATAAACTCCGTTCTATACTAAAAACAAAAACAAACAAACAAACAAAAAAGAAATGGTAGTTGAAGACAAGACATCTtgaca i rn5.chr9 C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e hg19.chr2 231158037 317 + 243199373 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=69006.000000 s mm10.chr1_GL456221_random 140008 342 + 206961 AAAG-ctttaatctcagaacttcggattcagagataggaagatttctgtgttttcaaggctagcctgatctaaatagcaagtttcaagacaaccagggctaggcagaaagatcctgtttcaaaagaaaaaaaGGAAAAAAGAAATGGAAGTTCAAATATATGATTATCATTGCCATCATTATTTGGTGTACAAAGTTGAACCTAGGGCTTCAAGTGAACTAAAGAAGACTTCAGCTCTAAGCTAAGCCCAGCCTTCTTGTTTTACTTTg-ttcctgtgctgctatgatgaacaccatgaccaaaatcaacctgttgaaggaaa-ggattatttggcttgcagcgt s rn5.chr9 92384429 341 + 121549591 caagtctttagtctcagtacttgggactcagagatgggaagatttacgtgttttcaaggctagtctggtctaaatagcaagttccaagacaaccatggctatgcagagagaacctgtttcagaagaaaaaaaAGAAAAA-GAAATGGAGGTTGAAACATGTCACCATCA---CCATCATTATTTGGTATACAGGGTTGAACCTAGGGCTTTGAGTGACCTAAAGAAGACTTCAGCCCTAAACAAAGCCCAGTCTTCTTGTTTTACCTTGCTTCCTGTGCtgctatgaaaaacaccatgaccaaaatccacctgttgaaggaaaaggattacttggcttacagctt i rn5.chr9 C 0 C 0 s monDom5.chr3 183319057 326 + 527952102 aaaa-tttttcttacagaact----aatcaaag------------ctgtGTGATCATGGCTAGCCTGATCTAAATAGCAAGTACCAAGACAACCAGGGCTAGGCAGAGAGATCCTGTTTCAAAAGAAAAAAAGGAAAAAAGAAATGGAAGTTCAAATATATGATCATCATTGCCATCATTATTTGGTGTACAAAGTTGAACCTAGGGCTTCAAGTGAACTAAAGAAGACTTCAGCTCTAAGCTAAGCCCAGCCTTCTTGTTTTACTTTG-TTCCTGTGCTGCTATGATGAACACCATGACCAATATCAACCTGTTGAAGGAAA-GGATTATTTGGCTTGCAGCAT i monDom5.chr3 N 0 N 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e hg19.chr2 231158037 317 + 243199373 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=19822.000000 s mm10.chr1_GL456221_random 140350 312 + 206961 acaatccattacagtgggaagccaaggcaggtactcaagacagaaataaggaggcatgaactgaagcagaaaccattgcttaaggcttgctccttggctcatattcaacttccattattattcaacttcggtataccatttctagggatggtaccacccacagggggcttagatttcctatatgaatccataatcaagaaaatgctcccatggaattgcctatagtttatctgagatacataattcttcaattgatgtttgctcttcttaggcatgtcaaattgacagccaaactagccaggacaCATCTAC s rn5.chr9 92384770 295 + 121549591 acagtccattatagtgtgaagccaaggtaggaactcaaggcagaaatatggaggcacaaactgaagcagaaaccactgcttaaggcttgctccttggctagtgttcaactgcttttcttattcaacttcggtacacc-tttctagggatggtaccacccacagtgggctgagacatcctatatcaattcttaatcaagaaaacatccccacagaattgcctatagtctatctgggatagacaattcttcaacttatgt---------------atgtcaagttaacaaccaaactagctaggacaCATCTA- i rn5.chr9 C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e hg19.chr2 231158037 317 + 243199373 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=177.000000 s mm10.chr1_GL456221_random 140662 7 + 206961 AATGCTA s hg19.chr2 231158354 7 + 243199373 AACAGTA i hg19.chr2 I 317 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169416 285 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I e rn5.chr9 92385065 0 + 121549591 C a score=15545.000000 s mm10.chr1_GL456221_random 140669 133 + 206961 TTTGAAACAGCTGGTCTCAGACATGATTTCATCATCTGTCTATTTAGCAAGCCTGAGTATTTATTCTAGAATTCTTAGCTCAAATATCTCTTCCCTCCCTGACTGTCC------TAGTCCCTCAG-----------------CTCCCAGAGATCCT s rn5.chr9 92385065 118 + 121549591 -------------GTCTCA--CATGATTTTGTCATCTCTCTATCCAGCAAGCCTGAGTATTTATCTTAGAATTCTTAGCTCAAATATCTCTCCCCACTCTGACTGTCC------TAGTTCCTCAG-----------------CTCCAAGAGAACCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169701 120 - 10418462 --------------TTTGA--AACAGCTTCCCTGTCTCTGCACTCAGCAATCT---ATATCAAACACAGAATGCTCAGTTAAAATGTGTCACCCCTCCCTAAATGTCC------CAGCCCCTCAT-----------CATCCCCTCCCAGGGCTCTC i speTri2.JH393335 I 285 C 0 s hg19.chr2 231158361 135 + 243199373 --------------TTTTA--GACAGCCACGG-GGctttccccctagcaaacct--atactcaatctagaatgctcagttcaagtg--ttaccccttcctgaatgttcattgattgacctgtcatgggccattgaccaggccttcccagggctcct i hg19.chr2 C 0 I 78 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=273.000000 s mm10.chr1_GL456221_random 140802 1 + 206961 T s rn5.chr9 92385183 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169821 1 - 10418462 T i speTri2.JH393335 C 0 I 38 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e hg19.chr2 231158496 78 + 243199373 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=9685.000000 s mm10.chr1_GL456221_random 140803 197 + 206961 CTTAAACTGTATGAGATAGGTTCTGTATGCTggcaaccacagcacatgcctttaatccaaacatttctgaggcagacggaggtgaatctctgagttcaagacctctacagt------aaaatggccaggatacaggAG----------CAGGAAAAAAaggaggaggaggaggaggaggagaaggaggaagaagaaggacaggagaggagaag s rn5.chr9 92385184 212 + 121549591 CTTAAACAGTGTGAGATTGGTTCTCTGTGTTggcagtcatagcacatgcctttaatccaaacactcctgag-cagaagcaggcgaatctctgtgttcgaggcctctacagtgcaagtaagagggctaggacacagagaaacccagtctcaagaagaAAGTggaggagggtggagggagaagaaggatgagaaagaggagaaggagaagaagga i rn5.chr9 C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169822 38 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e hg19.chr2 231158496 78 + 243199373 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=2704.000000 s mm10.chr1_GL456221_random 141000 78 + 206961 aaggaggaggaggaagagaaggaggaagaaggaagaag-------------------------aagaaagaggaggaggaa--------------gaggaggaggagACAAGGAAAG s rn5.chr9 92385396 99 + 121549591 gaagaggaggaggaggaggaagaagaagaaggaagaagtggaggaggaagaagtggagaaagtaggaaaggggaggaggag--------------gaggagAA----AAAAGGAGAG i rn5.chr9 C 0 C 0 s sarHar1.chr2_GL842283_random 20893 88 + 34115 aaggaaaaataggaTTAATAAGTTTAAGAAGGTTCCAA-------------------------AGCAATTGACAGGATTAATGGTTTTGGTGTTTTAGGGCAG----ACATGGAAAG i sarHar1.chr2_GL842283_random N 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169822 38 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882488 343 + 84719076 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e hg19.chr2 231158496 78 + 243199373 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=493.000000 s mm10.chr1_GL456221_random 141078 6 + 206961 -AGATCC s rn5.chr9 92385495 6 + 121549591 -AGATTC i rn5.chr9 C 0 C 0 s equCab2.chr6 17882831 6 + 84719076 -aggtcc i equCab2.chr6 I 343 C 0 s sarHar1.chr2_GL842283_random 20981 6 + 34115 AAAGTC- i sarHar1.chr2_GL842283_random C 0 C 0 e saiBol1.JH378144 14344 1506 + 18451090 I e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4169822 38 - 10418462 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e nomLeu2.GL397366 3676517 695 + 6458163 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e hg19.chr2 231158496 78 + 243199373 I e calJac3.chr6 146765585 685 + 158406734 I e papHam1.scaffold13267 58731 666 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=3276.000000 s mm10.chr1_GL456221_random 141084 1 + 206961 T s rn5.chr9 92385501 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169860 1 - 10418462 T i speTri2.JH393335 I 38 C 0 s nomLeu2.GL397366 3677212 1 + 6458163 T i nomLeu2.GL397366 I 695 I 3 s papHam1.scaffold13267 59397 1 + 66950 t i papHam1.scaffold13267 I 666 I 3 s saiBol1.JH378144 15850 1 + 18451090 T i saiBol1.JH378144 I 1506 I 3 s vicPac1.scaffold_216595 257 1 + 1070 T i vicPac1.scaffold_216595 N 0 N 0 s equCab2.chr6 17882837 1 + 84719076 t i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL842283_random 20987 1 + 34115 T i sarHar1.chr2_GL842283_random C 0 C 0 e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235535880 696 + 247518478 I e hg19.chr2 231158496 78 + 243199373 I e calJac3.chr6 146765585 685 + 158406734 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=701.000000 s mm10.chr1_GL456221_random 141085 3 + 206961 -TTT s rn5.chr9 92385502 3 + 121549591 -TTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169861 3 - 10418462 -TGT i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235536576 3 + 247518478 -tTC i panTro4.chr2B I 696 C 0 s nomLeu2.GL397366 3677216 3 + 6458163 -TCC i nomLeu2.GL397366 I 3 C 0 s papHam1.scaffold13267 59401 3 + 66950 -tcc i papHam1.scaffold13267 I 3 C 0 s calJac3.chr6 146766270 3 + 158406734 -ttc i calJac3.chr6 I 685 C 0 s saiBol1.JH378144 15854 3 + 18451090 -TCC i saiBol1.JH378144 I 3 C 0 s equCab2.chr6 17882838 3 + 84719076 -tct i equCab2.chr6 C 0 I 5 s sarHar1.chr2_GL842283_random 20988 3 + 34115 CTT- i sarHar1.chr2_GL842283_random C 0 C 0 e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e gorGor3.chr2B 119492582 738 + 131632457 I e hg19.chr2 231158496 78 + 243199373 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=784.000000 s mm10.chr1_GL456221_random 141088 2 + 206961 TC s rn5.chr9 92385505 1 + 121549591 -C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169864 2 - 10418462 AC i speTri2.JH393335 C 0 C 0 s equCab2.chr6 17882846 2 + 84719076 tc i equCab2.chr6 I 5 C 0 s sarHar1.chr2_GL842283_random 20991 2 + 34115 TC i sarHar1.chr2_GL842283_random C 0 C 0 e saiBol1.JH378144 15857 0 + 18451090 C e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 3130786 2 + 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22017 640 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e nomLeu2.GL397366 3677219 0 + 6458163 C e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235536579 0 + 247518478 C e hg19.chr2 231158496 78 + 243199373 I e calJac3.chr6 146766273 0 + 158406734 C e papHam1.scaffold13267 59404 0 + 66950 C e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=7807.000000 s mm10.chr1_GL456221_random 141090 3 + 206961 TTT- s rn5.chr9 92385506 3 + 121549591 TTC- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169866 3 - 10418462 TTC- i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235536579 3 + 247518478 TTT- i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3677219 3 + 6458163 TTC- i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold13267 59404 3 + 66950 ttc- i papHam1.scaffold13267 C 0 C 0 s calJac3.chr6 146766273 3 + 158406734 ttt- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 15857 3 + 18451090 TTC- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28844902 3 - 32117204 ttc- i otoGar3.GL873532 I 1714 C 0 s turTru2.JH486691 22657 2 - 63237 -TC- i turTru2.JH486691 I 640 I 8 s equCab2.chr6 17882848 3 + 84719076 ttc- i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL842283_random 20993 3 + 34115 -TCT i sarHar1.chr2_GL842283_random C 0 C 0 e ponAbe2.chr2b 122714522 440 + 135000294 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94085485 732 + 106825570 I e gorGor3.chr2B 119492582 738 + 131632457 I e hg19.chr2 231158496 78 + 243199373 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=10853.000000 s mm10.chr1_GL456221_random 141093 19 + 206961 CAAGAGCTT--TTTCCTCATC s rn5.chr9 92385509 19 + 121549591 CATGAGCTT--TCTCCTCATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169869 19 - 10418462 CTTGAGCTT--TCTTCTTCTC i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235536582 19 + 247518478 TGTGAGTGC--TTTTTGTCCG i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3677222 19 + 6458163 TGTGAGTGC--TTTTTGTCTG i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold13267 59407 19 + 66950 tgtgagtgc--tttttgcctg i papHam1.scaffold13267 C 0 C 0 s calJac3.chr6 146766276 19 + 158406734 tgtgagtgc--ttttagtctg i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 15860 19 + 18451090 TGTAAGTGC--TTTTTGCCTC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28844905 21 - 32117204 caacaggtctgtctttgtctc i otoGar3.GL873532 C 0 C 0 s equCab2.chr6 17882851 16 + 84719076 catgcattc--ttttttt--- i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL842283_random 20996 15 + 34115 ---CCATAC--CTTTCTTCT- i sarHar1.chr2_GL842283_random C 0 C 0 e ponAbe2.chr2b 122714522 440 + 135000294 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315074 626 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22659 8 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e gorGor3.chr2B 119492582 738 + 131632457 I e hg19.chr2 231158496 78 + 243199373 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=3417.000000 s mm10.chr1_GL456221_random 141112 3 + 206961 C---CC s rn5.chr9 92385528 3 + 121549591 C---CC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169888 6 - 10418462 TAGACC i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235536601 6 + 247518478 TAGACT i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3677241 6 + 6458163 TAGACC i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold13267 59426 6 + 66950 tagatc i papHam1.scaffold13267 C 0 C 0 s calJac3.chr6 146766295 6 + 158406734 tagacc i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 15879 6 + 18451090 TAGATC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28844926 6 - 32117204 tagatc i otoGar3.GL873532 C 0 C 0 s myoLuc2.GL429770 26315700 2 + 30916457 ----CC i myoLuc2.GL429770 I 626 I 1 s sarHar1.chr2_GL842283_random 21011 3 + 34115 ---TCC i sarHar1.chr2_GL842283_random C 0 C 0 e ponAbe2.chr2b 122714522 440 + 135000294 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22659 8 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e equCab2.chr6 17882867 0 + 84719076 C e gorGor3.chr2B 119492582 738 + 131632457 I e hg19.chr2 231158496 78 + 243199373 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=7939.000000 s mm10.chr1_GL456221_random 141115 2 + 206961 CT s rn5.chr9 92385531 2 + 121549591 CC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169894 2 - 10418462 TC i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235536607 2 + 247518478 CC i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3677247 2 + 6458163 CC i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold13267 59432 2 + 66950 tc i papHam1.scaffold13267 C 0 C 0 s calJac3.chr6 146766301 2 + 158406734 cc i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 15885 2 + 18451090 CC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28844932 2 - 32117204 cc i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 22667 2 - 63237 CC i turTru2.JH486691 I 8 C 0 s equCab2.chr6 17882867 2 + 84719076 ct i equCab2.chr6 C 0 I 1 s myoLuc2.GL429770 26315703 2 + 30916457 CT i myoLuc2.GL429770 I 1 I 56 s sarHar1.chr2_GL842283_random 21014 2 + 34115 CT i sarHar1.chr2_GL842283_random C 0 C 0 e ponAbe2.chr2b 122714522 440 + 135000294 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94085485 732 + 106825570 I e gorGor3.chr2B 119492582 738 + 131632457 I e hg19.chr2 231158496 78 + 243199373 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=765.000000 s mm10.chr1_GL456221_random 141117 2 + 206961 --TC s rn5.chr9 92385533 2 + 121549591 --TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169896 2 - 10418462 --TC i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235536609 2 + 247518478 --TT i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3677249 2 + 6458163 --TT i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold13267 59434 2 + 66950 --tt i papHam1.scaffold13267 C 0 C 0 s calJac3.chr6 146766303 2 + 158406734 --tt i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 15887 2 + 18451090 --TT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28844934 2 - 32117204 --tc i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 22669 2 - 63237 --TC i turTru2.JH486691 C 0 C 0 s equCab2.chr6 17882870 2 + 84719076 --tc i equCab2.chr6 I 1 C 0 s sarHar1.chr2_GL842283_random 21016 2 + 34115 GA-- i sarHar1.chr2_GL842283_random C 0 C 0 e ponAbe2.chr2b 122714522 440 + 135000294 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315705 56 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94085485 732 + 106825570 I e gorGor3.chr2B 119492582 738 + 131632457 I e hg19.chr2 231158496 78 + 243199373 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 18074 1154 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-33711.000000 s mm10.chr1_GL456221_random 141119 2 + 206961 -C------T s rn5.chr9 92385535 2 + 121549591 -C------T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169898 7 - 10418462 -CAG-GGTT i speTri2.JH393335 C 0 C 0 s panTro4.chr2B 235536611 3 + 247518478 -TAG----- i panTro4.chr2B C 0 C 0 s nomLeu2.GL397366 3677251 4 + 6458163 -TAGA---- i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold13267 59436 3 + 66950 -tag----- i papHam1.scaffold13267 C 0 C 0 s calJac3.chr6 146766305 2 + 158406734 -ta------ i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 15889 2 + 18451090 -TA------ i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28844936 3 - 32117204 -tag----- i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 22671 1 - 63237 -T------- i turTru2.JH486691 C 0 I 70 s equCab2.chr6 17882872 1 + 84719076 -t------- i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 19228 1 - 513109 -T------- i dasNov3.JH581855 I 1154 C 0 s sarHar1.chr2_GL842283_random 21018 2 + 34115 CT------- i sarHar1.chr2_GL842283_random C 0 C 0 e ponAbe2.chr2b 122714522 440 + 135000294 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315705 56 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94085485 732 + 106825570 I e gorGor3.chr2B 119492582 738 + 131632457 I e hg19.chr2 231158496 78 + 243199373 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-3103.000000 s mm10.chr1_GL456221_random 141121 5 + 206961 -AAACC s rn5.chr9 92385537 5 + 121549591 -AAACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169905 5 - 10418462 -CTACA i speTri2.JH393335 C 0 C 0 s equCab2.chr6 17882873 5 + 84719076 -agacc i equCab2.chr6 C 0 I 7 s dasNov3.JH581855 19229 2 - 513109 ----CT i dasNov3.JH581855 C 0 I 2 s sarHar1.chr2_GL842283_random 21020 5 + 34115 GGAAC- i sarHar1.chr2_GL842283_random C 0 C 0 e saiBol1.JH378144 15891 0 + 18451090 C e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 28844939 0 - 32117204 C e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315705 56 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22672 70 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e nomLeu2.GL397366 3677255 0 + 6458163 C e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235536614 0 + 247518478 C e hg19.chr2 231158496 78 + 243199373 I e calJac3.chr6 146766307 0 + 158406734 C e papHam1.scaffold13267 59439 0 + 66950 C e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-212.000000 s mm10.chr1_GL456221_random 141126 1 + 206961 A s rn5.chr9 92385542 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169910 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158574 1 + 243199373 g i hg19.chr2 I 78 C 0 s calJac3.chr6 146766307 1 + 158406734 g i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 15891 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s equCab2.chr6 17882885 1 + 84719076 a i equCab2.chr6 I 7 C 0 s dasNov3.JH581855 19233 1 - 513109 A i dasNov3.JH581855 I 2 C 0 s sarHar1.chr2_GL842283_random 21025 1 + 34115 A i sarHar1.chr2_GL842283_random C 0 C 0 e ponAbe2.chr2b 122714522 440 + 135000294 I e otoGar3.GL873532 28844939 0 - 32117204 C e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1074732 424 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315705 56 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22672 70 - 63237 I e rheMac3.chr12 94085485 732 + 106825570 I e nomLeu2.GL397366 3677255 0 + 6458163 C e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235536614 0 + 247518478 C e papHam1.scaffold13267 59439 0 + 66950 C e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=10500.000000 s mm10.chr1_GL456221_random 141127 1 + 206961 G s rn5.chr9 92385543 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169911 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158575 1 + 243199373 g i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536614 1 + 247518478 G i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122714962 1 + 135000294 g i ponAbe2.chr2b I 440 C 0 s rheMac3.chr12 94086217 1 + 106825570 G i rheMac3.chr12 I 732 I 2 s papHam1.scaffold13267 59439 1 + 66950 g i papHam1.scaffold13267 C 0 I 491 s calJac3.chr6 146766308 1 + 158406734 g i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 15892 1 + 18451090 G i saiBol1.JH378144 C 0 I 2 s otoGar3.GL873532 28844939 1 - 32117204 g i otoGar3.GL873532 C 0 I 2 s ailMel1.GL192536.1 1075156 1 - 2169676 G i ailMel1.GL192536.1 I 424 C 0 s equCab2.chr6 17882886 1 + 84719076 g i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 19234 1 - 513109 G i dasNov3.JH581855 C 0 I 3180 s sarHar1.chr2_GL842283_random 21026 1 + 34115 G i sarHar1.chr2_GL842283_random C 0 C 0 e canFam3.chr25 42517964 389 + 51628933 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315705 56 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22672 70 - 63237 I e nomLeu2.GL397366 3677255 0 + 6458163 C e gorGor3.chr2B 119492582 738 + 131632457 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-307.000000 s mm10.chr1_GL456221_random 141128 2 + 206961 TG s rn5.chr9 92385544 2 + 121549591 GT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169912 2 - 10418462 TG i speTri2.JH393335 C 0 C 0 s sarHar1.chr2_GL842283_random 21027 2 + 34115 GG i sarHar1.chr2_GL842283_random C 0 C 0 e saiBol1.JH378144 15893 2 + 18451090 I e ponAbe2.chr2b 122714963 0 + 135000294 C e otoGar3.GL873532 28844940 2 - 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e ailMel1.GL192536.1 1075157 0 - 2169676 C e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315705 56 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22672 70 - 63237 I e rheMac3.chr12 94086218 2 + 106825570 I e equCab2.chr6 17882887 0 + 84719076 C e nomLeu2.GL397366 3677255 0 + 6458163 C e gorGor3.chr2B 119492582 738 + 131632457 I e panTro4.chr2B 235536615 0 + 247518478 C e hg19.chr2 231158576 0 + 243199373 C e calJac3.chr6 146766309 2 + 158406734 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-505.000000 s mm10.chr1_GL456221_random 141130 1 + 206961 -T s rn5.chr9 92385546 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169914 1 - 10418462 -T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158576 1 + 243199373 -t i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536615 1 + 247518478 -T i panTro4.chr2B C 0 C 0 s ponAbe2.chr2b 122714963 1 + 135000294 -t i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677255 1 + 6458163 -T i nomLeu2.GL397366 C 0 C 0 s otoGar3.GL873532 28844942 1 - 32117204 -t i otoGar3.GL873532 I 2 I 1 s ailMel1.GL192536.1 1075157 1 - 2169676 -T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882887 1 + 84719076 -t i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL842283_random 21029 1 + 34115 A- i sarHar1.chr2_GL842283_random C 0 C 0 e saiBol1.JH378144 15893 2 + 18451090 I e canFam3.chr25 42517964 389 + 51628933 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315705 56 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22672 70 - 63237 I e rheMac3.chr12 94086218 2 + 106825570 I e gorGor3.chr2B 119492582 738 + 131632457 I e calJac3.chr6 146766309 2 + 158406734 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=5634.000000 s mm10.chr1_GL456221_random 141131 1 + 206961 T s rn5.chr9 92385547 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169915 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158577 1 + 243199373 t i hg19.chr2 C 0 I 1 s panTro4.chr2B 235536616 1 + 247518478 T i panTro4.chr2B C 0 I 1 s ponAbe2.chr2b 122714964 1 + 135000294 t i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3677256 1 + 6458163 T i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94086220 1 + 106825570 T i rheMac3.chr12 I 2 I 1 s calJac3.chr6 146766311 1 + 158406734 t i calJac3.chr6 I 2 I 1 s saiBol1.JH378144 15895 1 + 18451090 T i saiBol1.JH378144 I 2 I 1 s ailMel1.GL192536.1 1075158 1 - 2169676 T i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17882888 1 + 84719076 t i equCab2.chr6 C 0 I 2 s sarHar1.chr2_GL842283_random 21030 1 + 34115 T i sarHar1.chr2_GL842283_random C 0 C 0 e otoGar3.GL873532 28844943 1 - 32117204 I e canFam3.chr25 42517964 389 + 51628933 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315705 56 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22672 70 - 63237 I e gorGor3.chr2B 119492582 738 + 131632457 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=-14981.000000 s mm10.chr1_GL456221_random 141132 4 + 206961 --TTT-G s rn5.chr9 92385548 4 + 121549591 --TCT-G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169916 1 - 10418462 --T---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158579 3 + 243199373 --tCC-- i hg19.chr2 I 1 I 2 s panTro4.chr2B 235536618 3 + 247518478 --TCC-- i panTro4.chr2B I 1 I 2 s ponAbe2.chr2b 122714966 3 + 135000294 --tcc-- i ponAbe2.chr2b I 1 I 2 s nomLeu2.GL397366 3677258 3 + 6458163 --TCC-- i nomLeu2.GL397366 I 1 I 2 s rheMac3.chr12 94086222 3 + 106825570 --CCC-- i rheMac3.chr12 I 1 I 1 s calJac3.chr6 146766313 3 + 158406734 --ccc-- i calJac3.chr6 I 1 I 1 s saiBol1.JH378144 15897 3 + 18451090 --TCT-- i saiBol1.JH378144 I 1 I 1 s otoGar3.GL873532 28844944 4 - 32117204 --tcca- i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42518353 3 + 51628933 --TCT-- i canFam3.chr25 I 389 I 1 s ailMel1.GL192536.1 1075161 3 - 2169676 --TCC-- i ailMel1.GL192536.1 I 2 I 1 s equCab2.chr6 17882891 3 + 84719076 --tcc-- i equCab2.chr6 I 2 I 1 s sarHar1.chr2_GL842283_random 21031 4 + 34115 GAta--- i sarHar1.chr2_GL842283_random C 0 C 0 e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315705 56 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22672 70 - 63237 I e gorGor3.chr2B 119492582 738 + 131632457 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=213135.000000 s mm10.chr1_GL456221_random 141136 43 + 206961 ---------------------TCTTTGTGTGCTCTAAATTCATCAGAGTCTGTGACACTCTAT-A s rn5.chr9 92385552 43 + 121549591 ---------------------TCTTTGTGTGCTCCAAATTCATCAGAGTCTGTGACAACCTAT-A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169917 40 - 10418462 ---------------------TCTTTGCATGCTCAATATCTATTAGAG---GTTCCAATAGAT-A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158584 43 + 243199373 ---------------------TCTTCATGTGCCCAAGATTGATCAGAATTACTGATACCCAGT-A i hg19.chr2 I 2 C 0 s panTro4.chr2B 235536623 43 + 247518478 ---------------------CCTTCATGTGCCCAAGATTGATCAGAATTACTGATACCCAGT-A i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119493320 43 + 131632457 ---------------------TCTTCATGTGCCCAAGATTGATCAGAATTACTGATACCCAGT-A i gorGor3.chr2B I 738 C 0 s ponAbe2.chr2b 122714971 43 + 135000294 ---------------------ccttcatgtacccaagattgatcagagtgactgacacccagt-a i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3677263 43 + 6458163 ---------------------TCTTCATGTGCCCAAGATTGATCAGAATTACTGATACCCAGT-A i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94086226 43 + 106825570 ---------------------TCTTCATGTGCCCAAGATTGATCAGAGTTACTGATACCCAGT-A i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146766317 43 + 158406734 ---------------------tcttcatatgtccaagattgatcggagtgattgacacccagt-a i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 15901 43 + 18451090 ---------------------TCTTCAGGTACCCAAGATTGATCGGAGTGACTGACACCCAGT-A i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 28844948 44 - 32117204 ---------------------tctttatatgcccaagatcgatcacagtggctgatacccagtgg i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518357 43 + 51628933 ---------------------TCTTTGTATGCCCAAAATTGTCCATAATGTCTGATGCCCAGT-A i canFam3.chr25 I 1 I 1 s ailMel1.GL192536.1 1075165 43 - 2169676 ---------------------TCTTTGTGTGCCCAAGATTGTCCAGAGTGTCTGATACTCAGT-A i ailMel1.GL192536.1 I 1 I 1 s equCab2.chr6 17882895 43 + 84719076 ---------------------tatttgtgtgcccaagattgtccagagtgtgtgacactcagt-a i equCab2.chr6 I 1 I 1 s sarHar1.chr2_GL842283_random 21035 60 + 34115 gataggagagagagacagtATACTCATTGCAGTAAAGATCATTTGAGAT--ATGATGGTTAA--- i sarHar1.chr2_GL842283_random C 0 C 0 e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e myoLuc2.GL429770 26315705 56 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22672 70 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=38282.000000 s mm10.chr1_GL456221_random 141179 15 + 206961 -AGCAAGCAACAACTG s rn5.chr9 92385595 15 + 121549591 -TGCAAGCAACAAATG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169957 14 - 10418462 -T-TGGGCAATAATTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158627 12 + 243199373 -G-CAGGCAAT--GTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536666 12 + 247518478 -G-CAGGCAAT--GTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493363 12 + 131632457 -G-CAGGCAAT--GTG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715014 14 + 135000294 -g-catgcaataagtg i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677306 14 + 6458163 -G-CAGGCAATAAGTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086269 14 + 106825570 -G-CAGCCAATAAGTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766360 14 + 158406734 -g-catgcagtaattg i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 15944 14 + 18451090 -G-CATGCAGTAAGTG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28844992 14 - 32117204 -g-catgtaataactg i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518401 14 + 51628933 -A-CATGGGATAAGTG i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1075209 14 - 2169676 -A-CATGGGACAAGTG i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17882939 14 + 84719076 -g-catgggataagtg i equCab2.chr6 I 1 C 0 s myoLuc2.GL429770 26315761 14 + 30916457 -C-TGTGGGACATGTG i myoLuc2.GL429770 I 56 C 0 s sarHar1.chr2_GL842283_random 21095 15 + 34115 AG-CAAATAGAAGAAG i sarHar1.chr2_GL842283_random C 0 C 0 e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22672 70 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212441464 675 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 127350 1158 + 176633 I a score=30571.000000 s mm10.chr1_GL456221_random 141194 6 + 206961 GCTGTT--- s rn5.chr9 92385610 6 + 121549591 GGTGTT--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169971 6 - 10418462 TGTGTT--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158639 4 + 243199373 --TGTG--- i hg19.chr2 C 0 I 2 s panTro4.chr2B 235536678 4 + 247518478 --TGTG--- i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119493375 4 + 131632457 --TGTG--- i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122715028 4 + 135000294 --tgtg--- i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3677320 4 + 6458163 --TGTG--- i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94086283 4 + 106825570 --TGTG--- i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146766374 4 + 158406734 --tgtg--- i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 15958 4 + 18451090 --TGTG--- i saiBol1.JH378144 C 0 I 2 s micMur1.scaffold_3075 128508 6 + 176633 tatgtg--- i micMur1.scaffold_3075 I 1158 I 18 s otoGar3.GL873532 28845006 3 - 32117204 --tgt---- i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 22742 4 - 63237 --tgtg--- i turTru2.JH486691 I 70 I 415 s felCat5.chrC1 212442139 4 + 221441202 --TGTG--- i felCat5.chrC1 I 675 I 307 s canFam3.chr25 42518415 4 + 51628933 --TGTG--- i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1075223 4 - 2169676 --TGTG--- i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17882953 4 + 84719076 --tgtg--- i equCab2.chr6 C 0 I 2 s myoLuc2.GL429770 26315775 4 + 30916457 --TGTG--- i myoLuc2.GL429770 C 0 I 2 s sarHar1.chr2_GL842283_random 21110 6 + 34115 ---GTGGGA i sarHar1.chr2_GL842283_random C 0 C 0 e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e papHam1.scaffold13267 59440 491 + 66950 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I a score=104244.000000 s mm10.chr1_GL456221_random 141200 16 + 206961 GACTGGCTAGTTTTGG s rn5.chr9 92385616 16 + 121549591 GACTGGCTAGATCTGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4169977 16 - 10418462 GCCTGGATAGTCCTAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158645 16 + 243199373 GCTTGGATAGCTCTGG i hg19.chr2 I 2 C 0 s panTro4.chr2B 235536684 16 + 247518478 GCTTGGATAGCTCTGG i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119493381 16 + 131632457 GCTTGGATAGCTCTGG i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122715034 16 + 135000294 gCTTGGATAGCTCTGG i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3677326 16 + 6458163 GCTTGGATAGCTCTGG i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94086289 16 + 106825570 GCTTGGATAGCTGTGG i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146766380 16 + 158406734 gCTTGGATAGCTCTGG i calJac3.chr6 I 2 C 0 s saiBol1.JH378144 15964 16 + 18451090 GCTTGGATAGCTCTGG i saiBol1.JH378144 I 2 C 0 s otoGar3.GL873532 28845009 16 - 32117204 gattagatgactgTTG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518421 16 + 51628933 GATTAAACAGACCTGG i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1075229 16 - 2169676 GATTGAATAGCCCTGG i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17882959 16 + 84719076 gattgaatgGCTCTGC i equCab2.chr6 I 2 C 0 s myoLuc2.GL429770 26315781 16 + 30916457 AGTTGAGCAGCCCTGG i myoLuc2.GL429770 I 2 C 0 s sarHar1.chr2_GL842283_random 21116 10 + 34115 ------GAAGTGTTGG i sarHar1.chr2_GL842283_random C 0 C 0 e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128514 18 + 176633 I a score=17607.000000 s mm10.chr1_GL456221_random 141216 2 + 206961 -TG s rn5.chr9 92385632 2 + 121549591 -TA i rn5.chr9 C 0 I 2 s speTri2.JH393335 4169993 2 - 10418462 -TG i speTri2.JH393335 C 0 I 2 s hg19.chr2 231158661 2 + 243199373 -TG i hg19.chr2 C 0 I 2 s panTro4.chr2B 235536700 2 + 247518478 -TG i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119493397 2 + 131632457 -TG i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122715050 2 + 135000294 -TG i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3677342 2 + 6458163 -TG i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94086305 2 + 106825570 -TG i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146766396 2 + 158406734 -TG i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 15980 2 + 18451090 -TG i saiBol1.JH378144 C 0 I 2 s micMur1.scaffold_3075 128532 2 + 176633 -TG i micMur1.scaffold_3075 I 18 I 44 s otoGar3.GL873532 28845025 2 - 32117204 -TG i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42518437 2 + 51628933 -TG i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1075245 2 - 2169676 -TG i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17882975 2 + 84719076 -TG i equCab2.chr6 C 0 I 2 s myoLuc2.GL429770 26315797 2 + 30916457 -TG i myoLuc2.GL429770 C 0 N 0 s sarHar1.chr2_GL842283_random 21126 2 + 34115 AT- i sarHar1.chr2_GL842283_random C 0 C 0 e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I a score=29743.000000 s mm10.chr1_GL456221_random 141218 7 + 206961 -GAAAGTC s rn5.chr9 92385636 7 + 121549591 -GAAAGTC i rn5.chr9 I 2 C 0 s speTri2.JH393335 4169997 7 - 10418462 -GGAATTC i speTri2.JH393335 I 2 C 0 s hg19.chr2 231158665 7 + 243199373 -AGGACTC i hg19.chr2 I 2 C 0 s panTro4.chr2B 235536704 7 + 247518478 -AGGACTC i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119493401 7 + 131632457 -AGGACTC i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122715054 7 + 135000294 -GGGACTC i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3677346 7 + 6458163 -GGGACTC i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94086309 7 + 106825570 -GGGACTC i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146766400 7 + 158406734 -GAGACTC i calJac3.chr6 I 2 C 0 s saiBol1.JH378144 15984 7 + 18451090 -AGGACTC i saiBol1.JH378144 I 2 C 0 s otoGar3.GL873532 28845029 7 - 32117204 -GAGCCTC i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42518441 7 + 51628933 -TGGACTT i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1075249 7 - 2169676 -TGGACTC i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17882979 7 + 84719076 -AGGACTC i equCab2.chr6 I 2 I 1 s sarHar1.chr2_GL842283_random 21128 7 + 34115 CAAAATA- i sarHar1.chr2_GL842283_random C 0 C 0 e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128534 44 + 176633 I a score=-5800.000000 s mm10.chr1_GL456221_random 141225 1 + 206961 -A s rn5.chr9 92385643 1 + 121549591 -A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170004 1 - 10418462 -A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158672 1 + 243199373 -C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536711 1 + 247518478 -C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493408 1 + 131632457 -C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715061 1 + 135000294 -C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677353 1 + 6458163 -C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086316 1 + 106825570 -C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766407 1 + 158406734 -C i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 15991 1 + 18451090 -C i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845036 1 - 32117204 -T i otoGar3.GL873532 C 0 C 0 s sarHar1.chr2_GL842283_random 21135 1 + 34115 A- i sarHar1.chr2_GL842283_random C 0 C 0 e canFam3.chr25 42518448 0 + 51628933 C e ailMel1.GL192536.1 1075256 0 - 2169676 C e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e equCab2.chr6 17882986 1 + 84719076 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128534 44 + 176633 I a score=58833.000000 s mm10.chr1_GL456221_random 141226 14 + 206961 AGCTGAAGTGG-GTC s rn5.chr9 92385644 14 + 121549591 AGCTAAAGTGG-GTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170005 12 - 10418462 AACTTGAGC---GTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158673 14 + 243199373 AGCTGGAGTGG-CAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536712 14 + 247518478 AGCTGGAGTGG-CAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493409 14 + 131632457 AGCTGGAGTGG-CAC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715062 14 + 135000294 AGCTGGAGTGG-CAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677354 14 + 6458163 AGCTGGAGTGG-CAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086317 14 + 106825570 AGCTGGAGTGG-CAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766408 14 + 158406734 AGTTGGAATGG-CAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 15992 11 + 18451090 AGCTGAAGTGG---- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845037 15 - 32117204 AGCCAGAGTGCCCGC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518448 14 + 51628933 AGCATAAGTGA-CAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075256 14 - 2169676 ATCATGAGTGG-CAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17882987 14 + 84719076 AGCTGGAGTGG-CAC i equCab2.chr6 I 1 C 0 s sarHar1.chr2_GL842283_random 21136 14 + 34115 GATAGAAATAA-GAC i sarHar1.chr2_GL842283_random C 0 C 0 e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 14913 2882 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128534 44 + 176633 I a score=23926.000000 s mm10.chr1_GL456221_random 141240 6 + 206961 --AGACAG s rn5.chr9 92385658 6 + 121549591 --AGGTGG i rn5.chr9 C 0 I 4 s speTri2.JH393335 4170017 6 - 10418462 --CTGTGG i speTri2.JH393335 C 0 I 4 s hg19.chr2 231158687 6 + 243199373 --TGGTGG i hg19.chr2 C 0 I 6 s panTro4.chr2B 235536726 6 + 247518478 --TGGTGG i panTro4.chr2B C 0 I 6 s gorGor3.chr2B 119493423 6 + 131632457 --TGGTGG i gorGor3.chr2B C 0 I 6 s ponAbe2.chr2b 122715076 6 + 135000294 --TGGTGG i ponAbe2.chr2b C 0 I 6 s nomLeu2.GL397366 3677368 6 + 6458163 --TGGTGA i nomLeu2.GL397366 C 0 I 6 s rheMac3.chr12 94086331 6 + 106825570 --TGGTGG i rheMac3.chr12 C 0 I 6 s calJac3.chr6 146766422 6 + 158406734 --TGGTGG i calJac3.chr6 C 0 I 6 s otoGar3.GL873532 28845052 6 - 32117204 --TGGTAG i otoGar3.GL873532 C 0 I 9 s canFam3.chr25 42518462 6 + 51628933 --TGGTGG i canFam3.chr25 C 0 I 18 s ailMel1.GL192536.1 1075270 6 - 2169676 --TGGTGG i ailMel1.GL192536.1 C 0 I 18 s equCab2.chr6 17883001 6 + 84719076 --TTGTGG i equCab2.chr6 C 0 I 18 s choHof1.scaffold_14362 17795 5 + 23990 ---GAAAA i choHof1.scaffold_14362 I 2882 I 374 s sarHar1.chr2_GL842283_random 21150 8 + 34115 ATGTGCAG i sarHar1.chr2_GL842283_random C 0 C 0 e saiBol1.JH378144 16003 0 + 18451090 C e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128534 44 + 176633 I a score=-2340.000000 s mm10.chr1_GL456221_random 141246 4 + 206961 ATTT- s rn5.chr9 92385668 4 + 121549591 AGAG- i rn5.chr9 I 4 C 0 s speTri2.JH393335 4170027 4 - 10418462 GGAA- i speTri2.JH393335 I 4 C 0 s sarHar1.chr2_GL842283_random 21158 4 + 34115 -TTTT i sarHar1.chr2_GL842283_random C 0 C 0 e saiBol1.JH378144 16003 0 + 18451090 C e ponAbe2.chr2b 122715082 6 + 135000294 I e otoGar3.GL873532 28845058 9 - 32117204 I e canFam3.chr25 42518468 18 + 51628933 I e ailMel1.GL192536.1 1075276 18 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e rheMac3.chr12 94086337 6 + 106825570 I e equCab2.chr6 17883007 18 + 84719076 I e nomLeu2.GL397366 3677374 6 + 6458163 I e gorGor3.chr2B 119493429 6 + 131632457 I e panTro4.chr2B 235536732 6 + 247518478 I e hg19.chr2 231158693 6 + 243199373 I e calJac3.chr6 146766428 6 + 158406734 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128534 44 + 176633 I a score=-23344.000000 s mm10.chr1_GL456221_random 141250 6 + 206961 AAAG--GT----- s rn5.chr9 92385672 6 + 121549591 ACAG--GT----- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170031 6 - 10418462 ATAG--GT----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158699 4 + 243199373 AAGA--------- i hg19.chr2 I 6 I 7 s panTro4.chr2B 235536738 4 + 247518478 AAGA--------- i panTro4.chr2B I 6 I 7 s gorGor3.chr2B 119493435 4 + 131632457 AAGA--------- i gorGor3.chr2B I 6 I 7 s ponAbe2.chr2b 122715088 4 + 135000294 AAAA--------- i ponAbe2.chr2b I 6 I 7 s nomLeu2.GL397366 3677380 4 + 6458163 AAAA--------- i nomLeu2.GL397366 I 6 I 7 s rheMac3.chr12 94086343 4 + 106825570 AAAA--------- i rheMac3.chr12 I 6 I 7 s calJac3.chr6 146766434 4 + 158406734 AAAA--------- i calJac3.chr6 I 6 I 7 s saiBol1.JH378144 16003 4 + 18451090 AAAG--------- i saiBol1.JH378144 C 0 I 7 s micMur1.scaffold_3075 128578 5 + 176633 ATAGG-------- i micMur1.scaffold_3075 I 44 I 366 s otoGar3.GL873532 28845067 6 - 32117204 AGAAGT------- i otoGar3.GL873532 I 9 I 10 s canFam3.chr25 42518486 3 + 51628933 -AAA--------- i canFam3.chr25 I 18 I 3 s ailMel1.GL192536.1 1075294 3 - 2169676 -AGG--------- i ailMel1.GL192536.1 I 18 I 3 s equCab2.chr6 17883025 3 + 84719076 -AGA--------- i equCab2.chr6 I 18 I 3 s sarHar1.chr2_GL842283_random 21162 9 + 34115 AAAG----AGGCT i sarHar1.chr2_GL842283_random C 0 C 0 e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I a score=270611.000000 s mm10.chr1_GL456221_random 141256 68 + 206961 TGAATCAGT----GATTGT-AGGAAAACATTCT----------CAG-GACTTAAGGAAG---ATG-CAGCAGAGAA----AGATGGATGTAA s rn5.chr9 92385678 68 + 121549591 TGAAGCAGT----GATTAT-CGGGGAAAATTCT----------CAG-GACTTAAGGGAG---ATG-CATCAGACAA----AGATGGATGTAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170037 68 - 10418462 AAAGGCTG--------TCT-GAGGAAAGCCTCT----------CAGAGACTTAGAAAAG---AGG--ACAAGAGAAAGGGAGAAGGTTCTAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158710 76 + 243199373 -TAGGTGGTATGAGATTGTGAAGGAAAACCTCT----------TAG-GACTTAGGAAAG---AAG-CACAAGAGAAGGGAAAATGGTCCTGA i hg19.chr2 I 7 C 0 s panTro4.chr2B 235536749 76 + 247518478 -TAGGTGGTATGAGATTGTGAAGGAAAACCTCT----------TAG-GACTTAGGAAAG---AAG-CACAAGAGAAGGGAAAATGGTCCTGA i panTro4.chr2B I 7 C 0 s gorGor3.chr2B 119493446 76 + 131632457 -TAGGTGGTATGAGATTGTGAAGGAAAACCTCT----------TAG-GACTTAGGAAAG---AAG-CACAAGAGAAGGGAAAATGGTCCTGA i gorGor3.chr2B I 7 C 0 s ponAbe2.chr2b 122715099 76 + 135000294 -TAGATGGTATGAGATTATGAACGAAAACCTCT----------TAG-GACTTAGGAAAG---AAG-CCCAAGAGAAGGGAAAATCGTCCTGA i ponAbe2.chr2b I 7 C 0 s nomLeu2.GL397366 3677391 76 + 6458163 -TAGATGGTATGAGATTGTGAAGGAAAACCTCT----------TAG-GACTTAGAAAAG---AAG-CACAAGAGAAGGGAAAATGGTCCTGA i nomLeu2.GL397366 I 7 C 0 s rheMac3.chr12 94086354 76 + 106825570 -TAGATGGTATGAGATTATGAATGAAAACCTCT----------TAG-GACTTAGGAAAG---AAG-CACAAGAGAAGGGAAAATGGTCCTGA i rheMac3.chr12 I 7 C 0 s calJac3.chr6 146766445 71 + 158406734 -TAGATGGTAGGAGATTAT-----TAAAACTCT----------TAG-GATTTAGTAAAG---AAG-CACAAGCAAAGGGAAAATGGTCCTGA i calJac3.chr6 I 7 C 0 s saiBol1.JH378144 16014 76 + 18451090 -TAGATGGTATGAGAATGTAAGGGAAAACCTCT----------TAG-GACTTAGGAAAG---AAG-CTCAAGAAAAGGGAAAATGGTCCTGA i saiBol1.JH378144 I 7 C 0 s otoGar3.GL873532 28845083 70 - 32117204 -TAAA---CAAGATATTATAAAGAAAAGCCTCT----------TAG-GACTTAG---AG---AAG-CACAAGAGTAAGGGAAACGGTTCTaa i otoGar3.GL873532 I 10 C 0 s canFam3.chr25 42518492 66 + 51628933 -------CAAAGAGATTACGAAGGAAAACCTCT----------CAA-AACTTAGGAAAA---AATGCACAAGAGAAAAGGAAAAAGC----- i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1075300 68 - 2169676 -------TAAAGAGATTATGAAGGAAAACCTCT----------TAA-AACTTAGGAAAA---AAG--ACAAGAGAAAAGAAAAAAGTT-TAA i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17883031 70 + 84719076 -------CAAAGGGATGGTGAAGAAAAACCTCT----------TAA-AACTTAGGAAAA---AAG-CACAGGAGAAAGTAAAAACGTTCTAA i equCab2.chr6 I 3 C 0 s sarHar1.chr2_GL842283_random 21171 80 + 34115 ----TTAATCAAAGTtcaccaatatatatatatatatatagaaagg-gAAGTGAGAAAGTTTAAG-CATGAGAAACAGGAACATGA------ i sarHar1.chr2_GL842283_random C 0 I 627 e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=136362.000000 s mm10.chr1_GL456221_random 141324 35 + 206961 GGTGGATCTTTCTAG-----------CTGTCACAGGCTAGAGTCCA s rn5.chr9 92385746 35 + 121549591 GGCGGGTCTTTCTAG-----------CTGTCACAGGCTACAGTGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170105 34 - 10418462 GG-GTGACTTTCCAA-----------CTATCATTTGTTGAAATCTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158786 34 + 243199373 AG-ATGCTTTTCTGG-----------CTTCTATTGATTGAAGTCTA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536825 34 + 247518478 AG-ATGCTTTTCTGG-----------CTTCTATTGATTGAAGTCTA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493522 34 + 131632457 AG-ATGCTTTTCTGG-----------CTTCTATTGATTGAAGTCTA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715175 33 + 135000294 AA-ATGATTTTCTGG-----------CTTCTATTGATTGGAGTCT- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677467 34 + 6458163 AG-ATGCTTTTCTGG-----------CTTCTATTGATTGAAGTCTA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086430 34 + 106825570 AG-ATGCTTTTCTGG-----------CTTCTATTGATTGAAGTCTA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766516 34 + 158406734 AG-ATGATTTTCTGG-----------CTTCTATTGATTAAAGTATA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16090 34 + 18451090 AG-ATGATTTTCTGG-----------CTTCTGTTGATTGAAATCTA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845153 34 - 32117204 gg-atgattttccag-----------ctttcattgattaaaattta i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518558 39 + 51628933 -------ACTTGAAATGCTTGAAATTCTACCATTGATTGAATTCTA i canFam3.chr25 C 0 I 6 s ailMel1.GL192536.1 1075368 45 - 2169676 AG-ATGATTTTCCAATCCTTGAAATTCTACCACTGATTGAATTCTA i ailMel1.GL192536.1 C 0 I 6 s equCab2.chr6 17883101 34 + 84719076 AG-ATTATTTTCCAG-----------CTACGATTTATTGAAGTCTA i equCab2.chr6 C 0 I 4 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 24041 3289 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=-19945.000000 s mm10.chr1_GL456221_random 141359 1 + 206961 -T s rn5.chr9 92385781 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170139 1 - 10418462 -T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158820 1 + 243199373 -G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536859 1 + 247518478 -G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493556 1 + 131632457 -G i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3677501 1 + 6458163 -G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086464 1 + 106825570 -G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766550 1 + 158406734 -G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16124 1 + 18451090 -G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845187 1 - 32117204 -g i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518603 1 + 51628933 C- i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1075419 1 - 2169676 C- i ailMel1.GL192536.1 I 6 C 0 s equCab2.chr6 17883139 1 + 84719076 A- i equCab2.chr6 I 4 C 0 s pteVam1.scaffold_9232 45587 1 + 60856 c- i pteVam1.scaffold_9232 I 3492 I 15 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e ponAbe2.chr2b 122715208 0 + 135000294 C e proCap1.scaffold_27553 10922 2147 + 24860 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=26174.000000 s mm10.chr1_GL456221_random 141360 15 + 206961 AGGTAACAAA--------AGGGA---- s rn5.chr9 92385782 15 + 121549591 AGGTAACAAG--------AGAGA---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170140 15 - 10418462 AAGAGGCAAG--------TGAGA---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158821 15 + 243199373 AAGAAGCACA--------GGTGA---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536860 15 + 247518478 AAGAAGCACA--------GGTGA---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493557 15 + 131632457 AAGAAGCACA--------GGTGA---- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715208 14 + 135000294 -AGAAGCACA--------GGTGA---- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677502 15 + 6458163 AAGAAGCACA--------GGTGA---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086465 15 + 106825570 AAGAAGCACA--------GGTGA---- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766551 15 + 158406734 AAGCAGCACA--------AGCGA---- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16125 12 + 18451090 A---AGCACA--------GGTGA---- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845188 23 - 32117204 aagaagtacaggaatattggtga---- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518604 15 + 51628933 ----AGATGA--------GGAGAGGGA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075420 15 - 2169676 ----AGGTGA--------GGAGAGGGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883140 15 + 84719076 ----AGTTGA--------GGCAAGGAA i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_9232 45588 15 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=-10362.000000 s mm10.chr1_GL456221_random 141375 6 + 206961 AATGGA- s rn5.chr9 92385797 6 + 121549591 AATGGA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170155 6 - 10418462 AAAGAA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158836 6 + 243199373 AGACAG- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536875 6 + 247518478 AGACAG- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493572 6 + 131632457 AGACAG- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715222 6 + 135000294 AGACAG- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677517 6 + 6458163 AAAGAG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086480 6 + 106825570 AGAGAG- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766566 6 + 158406734 AGAGAG- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16137 6 + 18451090 AGAGAA- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845211 6 - 32117204 agagtg- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518619 6 + 51628933 -GATGGT i canFam3.chr25 C 0 I 6 s ailMel1.GL192536.1 1075435 6 - 2169676 -GATGTT i ailMel1.GL192536.1 C 0 I 6 s equCab2.chr6 17883155 6 + 84719076 -GATGGT i equCab2.chr6 C 0 I 6 s pteVam1.scaffold_9232 45603 1 + 60856 ------t i pteVam1.scaffold_9232 I 15 I 6219 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=68111.000000 s mm10.chr1_GL456221_random 141381 22 + 206961 G---------------TCA----GACAACCTGGGTCTGAAC--------------- s rn5.chr9 92385803 21 + 121549591 G---------------TCA----GACA-CCTGGGTCTGAAT--------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170161 31 - 10418462 AGA------TTCTCATTTA----GACACCTTGAATCTCAAC--------------- i speTri2.JH393335 C 0 I 15 s hg19.chr2 231158842 36 + 243199373 GGAGATGGTTTCTCATT-A----GACACCTTGGATTTGAGC--------------- i hg19.chr2 C 0 I 15 s panTro4.chr2B 235536881 36 + 247518478 GGAGATGGTTTCTCATT-A----GACACCTTGGATTTGAGC--------------- i panTro4.chr2B C 0 I 15 s gorGor3.chr2B 119493578 36 + 131632457 GGAGATGGTTTCTCATT-A----GACACCTTGGATTTGAGC--------------- i gorGor3.chr2B C 0 I 15 s ponAbe2.chr2b 122715228 37 + 135000294 GGAGATGGTATCTCATTCA----GATACCTTGGGTTTGAGC--------------- i ponAbe2.chr2b C 0 I 15 s nomLeu2.GL397366 3677523 36 + 6458163 GGAGATGGTTTCTCATT-A----GACAACTTGGATTTGAGC--------------- i nomLeu2.GL397366 C 0 I 15 s rheMac3.chr12 94086486 36 + 106825570 GGAGATGGTTTCTCATT-A----GACACCCTGGGTTTGAGC--------------- i rheMac3.chr12 C 0 I 15 s calJac3.chr6 146766572 37 + 158406734 GGAGATGGTTTCTCAACCA----GACACCTTGGGTTTGAGC--------------- i calJac3.chr6 C 0 I 15 s saiBol1.JH378144 16143 41 + 18451090 AGAGATGATTACTTATTCATTCTGACACCGTGGGTTGGAGT--------------- i saiBol1.JH378144 C 0 I 15 s otoGar3.GL873532 28845217 33 - 32117204 ggagatcatttttc----t----gacaccttgggtttaagc--------------- i otoGar3.GL873532 C 0 I 15 s canFam3.chr25 42518631 37 + 51628933 ---------------TTTA----GTCACCCTGGCTTTGAGCTGACAGTGGGACACC i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1075447 32 - 2169676 ---------------TTTA----GCCACCCTGGCTT-----TGACAGTGGGACACC i ailMel1.GL192536.1 I 6 C 0 s equCab2.chr6 17883167 37 + 84719076 ---------------TTTA----GATACTTTGGCTTTGAGCTGACAGTGGGACATC i equCab2.chr6 I 6 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_9232 45604 6219 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=39610.000000 s mm10.chr1_GL456221_random 141403 5 + 206961 CAGGC s rn5.chr9 92385824 5 + 121549591 CAGGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170207 5 - 10418462 CAGGC i speTri2.JH393335 I 15 C 0 s hg19.chr2 231158893 5 + 243199373 CAGGT i hg19.chr2 I 15 C 0 s panTro4.chr2B 235536932 5 + 247518478 CAGGT i panTro4.chr2B I 15 C 0 s gorGor3.chr2B 119493629 5 + 131632457 CAGGT i gorGor3.chr2B I 15 C 0 s ponAbe2.chr2b 122715280 5 + 135000294 CAGGT i ponAbe2.chr2b I 15 C 0 s nomLeu2.GL397366 3677574 5 + 6458163 CAGGT i nomLeu2.GL397366 I 15 C 0 s rheMac3.chr12 94086537 5 + 106825570 CAGAT i rheMac3.chr12 I 15 C 0 s calJac3.chr6 146766624 5 + 158406734 CCGGT i calJac3.chr6 I 15 C 0 s saiBol1.JH378144 16199 5 + 18451090 CAGGT i saiBol1.JH378144 I 15 C 0 s otoGar3.GL873532 28845265 5 - 32117204 caggt i otoGar3.GL873532 I 15 C 0 s canFam3.chr25 42518668 5 + 51628933 CAAGT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075479 5 - 2169676 CAGGT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883204 5 + 84719076 CAGGT i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26117301 5 + 30916457 TAAGA i myoLuc2.GL429770 N 0 I 159 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_9232 45604 6219 + 60856 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=20055.000000 s mm10.chr1_GL456221_random 141408 2 + 206961 AG s rn5.chr9 92385829 2 + 121549591 AG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170212 2 - 10418462 AG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158898 2 + 243199373 AG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536937 2 + 247518478 AG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493634 2 + 131632457 AG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715285 2 + 135000294 AG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677579 2 + 6458163 AG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086542 2 + 106825570 AG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766629 2 + 158406734 AG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16204 2 + 18451090 AG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845270 2 - 32117204 ag i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518673 2 + 51628933 AG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075484 2 - 2169676 AG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883209 2 + 84719076 AG i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_9232 45604 6219 + 60856 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=14563.000000 s mm10.chr1_GL456221_random 141410 4 + 206961 AA--CT- s rn5.chr9 92385831 4 + 121549591 AA--CT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170214 4 - 10418462 AA--AT- i speTri2.JH393335 C 0 I 1 s hg19.chr2 231158900 4 + 243199373 AA--AT- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235536939 4 + 247518478 AA--AT- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119493636 4 + 131632457 AA--AT- i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122715287 4 + 135000294 AA--GT- i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3677581 4 + 6458163 AG--AT- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94086544 4 + 106825570 AA--AG- i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146766631 4 + 158406734 AA--AT- i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 16206 4 + 18451090 AA--AT- i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28845272 4 - 32117204 aa--at- i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42518675 4 + 51628933 AA--AT- i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1075486 6 - 2169676 AAATAT- i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17883211 4 + 84719076 GA--AT- i equCab2.chr6 C 0 I 2 s xenTro3.GL174023 63012 4 - 79923 -A--ATT i xenTro3.GL174023 N 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_9232 45604 6219 + 60856 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=7098.000000 s mm10.chr1_GL456221_random 141414 1 + 206961 T s rn5.chr9 92385835 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170219 1 - 10418462 T i speTri2.JH393335 I 1 C 0 s hg19.chr2 231158905 1 + 243199373 T i hg19.chr2 I 1 C 0 s panTro4.chr2B 235536944 1 + 247518478 T i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119493641 1 + 131632457 T i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122715292 1 + 135000294 T i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3677586 1 + 6458163 T i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94086549 1 + 106825570 T i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146766636 1 + 158406734 T i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 16211 1 + 18451090 T i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 28845277 1 - 32117204 t i otoGar3.GL873532 I 1 C 0 s xenTro3.GL174023 63016 1 - 79923 T i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e canFam3.chr25 42518679 2 + 51628933 I e ailMel1.GL192536.1 1075492 2 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_9232 45604 6219 + 60856 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e equCab2.chr6 17883215 2 + 84719076 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=201453.000000 s mm10.chr1_GL456221_random 141415 30 + 206961 TTGGAAGG---TTGGAAATGCAAGACTCATACC------ s rn5.chr9 92385836 33 + 121549591 TTGGGAGGAGGTTGGAAATGCAAGACTCATACC------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170220 32 - 10418462 TTGGGAGGAGGTTGGCTATGC-AGGCTCACCAA------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158906 33 + 243199373 TTGGGAGGAGGTTGGAAATGCCAGACTCACAAA------ i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536945 33 + 247518478 TTGGGAGGAGGTTGGAAATGCCAGACTCACAAA------ i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493642 33 + 131632457 TTGGGAGGAGGTTGGAAATGCCAGACTCACAAA------ i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715293 33 + 135000294 CTGGGAAGAGGTTGGAAATGCCAGACTGACAAA------ i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677587 33 + 6458163 TTGGGAGGAGGTTGGAAATGCCAGACTCACAAA------ i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086550 33 + 106825570 TTGGGAGGAGGTTGGAAATGCCAGACTCACAAA------ i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766637 33 + 158406734 TTGGGAGGAGGTTGGAAAAGCCAGACTCAGAAA------ i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16212 33 + 18451090 TTGGAAGGAGGTTAGAAATGCCAGACTCACAAA------ i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845278 32 - 32117204 ttgggaggtgatgggaaatgccagaatc-taaa------ i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518681 31 + 51628933 ATGGGGAGAGGCTGGAAATGCCAGAC--ACAAA------ i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1075494 33 - 2169676 ATGGGAGAAGGCTGGAAATGCCAGACTTACAAA------ i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17883217 33 + 84719076 TTGAGAGGGGGTTAGAAATGCCAGATTCAGAAA------ i equCab2.chr6 I 2 C 0 s xenTro3.GL174023 63017 25 - 79923 TTGCAA-----TTGGAAA---------CATAAATGGTCT i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_9232 45604 6219 + 60856 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442143 307 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=153.000000 s mm10.chr1_GL456221_random 141445 1 + 206961 -A s rn5.chr9 92385869 1 + 121549591 -A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170252 1 - 10418462 -A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158939 1 + 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536978 1 + 247518478 -A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493675 1 + 131632457 -A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715326 1 + 135000294 -A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677620 1 + 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086583 1 + 106825570 -A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766670 1 + 158406734 -A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16245 1 + 18451090 -G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845310 1 - 32117204 -a i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212442450 1 + 221441202 -G i felCat5.chrC1 I 307 I 114 s canFam3.chr25 42518712 1 + 51628933 -A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075527 1 - 2169676 -A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883250 1 + 84719076 -A i equCab2.chr6 C 0 C 0 s xenTro3.GL174023 63042 1 - 79923 C- i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_9232 45604 6219 + 60856 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=466976.000000 s mm10.chr1_GL456221_random 141446 86 + 206961 CTGAAATACGGA-TACCTACATGCTCAGGTCC-----TTT--------------------TATCTTGCAGAGAAATTTTCTA----CCCAATCCTCCACGGATACATCACAA-----AAGA s rn5.chr9 92385870 91 + 121549591 CCGAAATACAGA-TACCTACATATTCAGGTCC-----TTT--------------------TATCTTGCAGAGAAATTTTCTA----CCCATTCCTCCACGGATATATGGCAAGAGAAAAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170253 92 - 10418462 CAGAAACCCAGAGTAACCATGGAGTTGAATCT-----TTT--------------------TATCTTGCAGGAAGGATTTCTA----CCTCATCCTCCAAGAATATATCACAGGAAAAAAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231158940 92 + 243199373 CGGAAACACAGGCTGACCATATACCTGAATCT-----TTT--------------------TGTCTTTCAGAATGGATTTCTG----CCTGATCCTCCAAGAATACGTTACAGGAAAAAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235536979 92 + 247518478 CGGAAACACAGGCTGACCATATACCTGAATCT-----TTT--------------------TGTCTTTCAGAATGGATTTCTG----CCTGATCCTCCAAGAATACGTTACAGGAAAAAAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493676 92 + 131632457 CGGAAACACAGGCTGACCATATACCTGAATCT-----TTT--------------------TGTCTTTCAGAATGGATTTCTG----CCTGATCCTCCAAGAATACGTTACAGGAAAAAAAA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715327 92 + 135000294 CAGAAACATAGGCTGACTATGTACCTTGGTCT-----TTT--------------------TATCTTTCAGGAAGGATTTCTA----CCTAATCCTCCAAGAATATATTACAGGAACAAAAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677621 92 + 6458163 CAGAAACACAGGCTGACCATATACCTGAATCT-----TTT--------------------TGTCTTTCAGAATGGATTTCTG----CCTGATCCTCCAAGAATACATTACAGGAAAAAAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086584 92 + 106825570 CAGAAACACAGGCTGACCATATACCTGAATCT-----TTT--------------------TGTCTTTCAGAATGGATTTCTG----CCTAATCCTCCAAGAATATATTCCAGGAAAAAAAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766671 86 + 158406734 CAGAAACACAGGCTGACCATGTACCTGAATCT-----TTT--------------------TGTATTTCAGAGTGGATTTCTG----CATAATCCTCCAAGAA------ATAGGAAAAAGAA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16246 112 + 18451090 CAAAAACACAGGCTGACCATATACCttgtttg-----tttgtttctttgtttgtttgttCTATCTTTCAGGAAGGATTTCTA----CCTAATCCTCCAAGAATTTATTACAGGAACAAAAA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845311 85 - 32117204 cagaaatacaggctg-------acctagaTCT-----TTT--------------------TACCTTTCAGGGTGGAATGCTA----CCTCATCCTTCAAGAGTATATAATGGGAGGAAAAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518713 87 + 51628933 TAGAAACATAGGCTAGCCACAAACTTGGATCT-----TTT--------------------TATCTTTCAGAAAGAACTTCTA----CATAATCCTCCAAGAAAATATTTCAGGAAA----- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075528 85 - 2169676 TAGAA--ATAGGCTAGCCACAAACTTGGATCT-----TTT--------------------TATCTTTCAGAAAGGACTTCTA----CATAATCCTCCAAGAAAATATTTCAGGAAA----- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883251 87 + 84719076 CAGAAGCACAGGCTAACCATATACTTAAATCT-----TTT--------------------TATCTTTCAGAAAGGATTTCTA----CATAATCCTGAAAGAATTTATGGCAGGAGA----- i equCab2.chr6 C 0 C 0 s xenTro3.GL174023 63043 84 - 79923 CTATAACAC---------TTCTACCTGAGGGTGCAAGTTT--------------------TATCTTGCAAAGTCCTTTACCACCCTCCTAAACCTTCCGGCTCA----ATCGGATAA---- i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_9232 45604 6219 + 60856 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442451 114 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=13981.000000 s mm10.chr1_GL456221_random 141532 2 + 206961 GG s rn5.chr9 92385961 2 + 121549591 GG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170345 2 - 10418462 GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159032 2 + 243199373 GG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537071 2 + 247518478 GG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493768 2 + 131632457 GG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715419 2 + 135000294 GG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677713 2 + 6458163 GG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086676 2 + 106825570 GG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766757 2 + 158406734 GG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16358 2 + 18451090 GG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845396 2 - 32117204 GG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518800 2 + 51628933 AG i canFam3.chr25 C 0 I 26 s ailMel1.GL192536.1 1075613 2 - 2169676 AG i ailMel1.GL192536.1 C 0 I 26 s equCab2.chr6 17883338 2 + 84719076 AA i equCab2.chr6 C 0 I 26 s pteVam1.scaffold_12135 12951 2 + 44403 AA i pteVam1.scaffold_12135 T 29661 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e xenTro3.GL174023 63127 0 - 79923 C e proCap1.scaffold_27553 10922 2147 + 24860 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442451 114 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=-31218.000000 s mm10.chr1_GL456221_random 141534 3 + 206961 TG---------------------A s rn5.chr9 92385963 3 + 121549591 TG---------------------A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170347 24 - 10418462 TGATCATTATATAACTTTCTACAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159034 23 + 243199373 TGATTATTACATAGCTTTATAC-A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537073 23 + 247518478 TGATTATTACATAGCTTTATAT-A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493770 23 + 131632457 TGATTATTACATAGCTTTATAC-A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715421 23 + 135000294 TGATTATTACATAATTTTCTAC-A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677715 23 + 6458163 TGATTATTACATAGCTTTATAC-A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086678 23 + 106825570 TGATTATTACATAGCTTTCTAC-A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766759 23 + 158406734 TAATTATTACATAACTTTCTAC-A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16360 23 + 18451090 TGATTATTACATAATTTTCTAC-A i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845398 7 - 32117204 TGA-TATT---------------- i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212442565 3 + 221441202 -----------TAA---------- i felCat5.chrC1 I 114 I 25 s canFam3.chr25 42518828 3 + 51628933 -----------TAA---------- i canFam3.chr25 I 26 C 0 s ailMel1.GL192536.1 1075641 3 - 2169676 -----------TAA---------- i ailMel1.GL192536.1 I 26 C 0 s equCab2.chr6 17883366 3 + 84719076 -----------TAA---------- i equCab2.chr6 I 26 C 0 s pteVam1.scaffold_12135 12953 2 + 44403 ------------AA---------- i pteVam1.scaffold_12135 C 0 I 25 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e xenTro3.GL174023 63127 0 - 79923 C e proCap1.scaffold_27553 10922 2147 + 24860 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=-7749.000000 s mm10.chr1_GL456221_random 141537 3 + 206961 GTG s rn5.chr9 92385966 3 + 121549591 GTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170371 3 - 10418462 GTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159057 1 + 243199373 G-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537096 1 + 247518478 G-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493793 1 + 131632457 G-- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715444 1 + 135000294 G-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677738 1 + 6458163 G-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086701 1 + 106825570 G-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766782 1 + 158406734 G-- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16383 1 + 18451090 G-- i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42518831 1 + 51628933 G-- i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1075644 1 - 2169676 G-- i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17883369 1 + 84719076 A-- i equCab2.chr6 C 0 I 2 s pteVam1.scaffold_12135 12980 1 + 44403 G-- i pteVam1.scaffold_12135 I 25 I 118 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e otoGar3.GL873532 28845405 0 - 32117204 C e xenTro3.GL174023 63127 0 - 79923 C e proCap1.scaffold_27553 10922 2147 + 24860 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442568 25 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=5301.000000 s mm10.chr1_GL456221_random 141540 5 + 206961 CTCAC s rn5.chr9 92385969 5 + 121549591 CTCAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170374 5 - 10418462 CTCAC i speTri2.JH393335 C 0 C 0 s canFam3.chr25 42518834 5 + 51628933 CTTAT i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1075647 5 - 2169676 CTCAT i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17883372 5 + 84719076 CTCAT i equCab2.chr6 I 2 C 0 s xenTro3.GL174023 63127 5 - 79923 TCCAA i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 16384 0 + 18451090 C e ponAbe2.chr2b 122715445 0 + 135000294 C e otoGar3.GL873532 28845405 0 - 32117204 C e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e rheMac3.chr12 94086702 0 + 106825570 C e nomLeu2.GL397366 3677739 0 + 6458163 C e gorGor3.chr2B 119493794 0 + 131632457 C e panTro4.chr2B 235537097 0 + 247518478 C e hg19.chr2 231159058 0 + 243199373 C e calJac3.chr6 146766783 0 + 158406734 C e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442568 25 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=2810.000000 s mm10.chr1_GL456221_random 141545 1 + 206961 C s rn5.chr9 92385974 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170379 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159058 1 + 243199373 C i hg19.chr2 C 0 I 8 s panTro4.chr2B 235537097 1 + 247518478 C i panTro4.chr2B C 0 I 8 s gorGor3.chr2B 119493794 1 + 131632457 C i gorGor3.chr2B C 0 I 8 s ponAbe2.chr2b 122715445 1 + 135000294 A i ponAbe2.chr2b C 0 I 8 s nomLeu2.GL397366 3677739 1 + 6458163 C i nomLeu2.GL397366 C 0 I 8 s rheMac3.chr12 94086702 1 + 106825570 C i rheMac3.chr12 C 0 I 8 s calJac3.chr6 146766783 1 + 158406734 A i calJac3.chr6 C 0 I 8 s saiBol1.JH378144 16384 1 + 18451090 C i saiBol1.JH378144 C 0 I 8 s tupBel1.scaffold_131864.1-63012 16697 1 + 63012 T i tupBel1.scaffold_131864.1-63012 N 0 C 0 s canFam3.chr25 42518839 1 + 51628933 C i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075652 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883377 1 + 84719076 C i equCab2.chr6 C 0 C 0 s xenTro3.GL174023 63132 1 - 79923 T i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e otoGar3.GL873532 28845405 0 - 32117204 C e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442568 25 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=1730.000000 s mm10.chr1_GL456221_random 141546 1 + 206961 -A s rn5.chr9 92385975 1 + 121549591 -A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170380 1 - 10418462 -A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159067 1 + 243199373 -A i hg19.chr2 I 8 C 0 s panTro4.chr2B 235537106 1 + 247518478 -A i panTro4.chr2B I 8 C 0 s gorGor3.chr2B 119493803 1 + 131632457 -A i gorGor3.chr2B I 8 C 0 s ponAbe2.chr2b 122715454 1 + 135000294 -A i ponAbe2.chr2b I 8 C 0 s nomLeu2.GL397366 3677748 1 + 6458163 -A i nomLeu2.GL397366 I 8 C 0 s rheMac3.chr12 94086711 1 + 106825570 -A i rheMac3.chr12 I 8 C 0 s calJac3.chr6 146766792 1 + 158406734 -A i calJac3.chr6 I 8 C 0 s tarSyr1.scaffold_76449 3785 1 + 9015 -G i tarSyr1.scaffold_76449 N 0 I 7 s otoGar3.GL873532 28845405 1 - 32117204 -A i otoGar3.GL873532 C 0 C 0 s tupBel1.scaffold_131864.1-63012 16698 1 + 63012 -A i tupBel1.scaffold_131864.1-63012 C 0 C 0 s canFam3.chr25 42518840 1 + 51628933 -A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075653 1 - 2169676 -A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883378 1 + 84719076 -A i equCab2.chr6 C 0 C 0 s xenTro3.GL174023 63133 1 - 79923 T- i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 16385 8 + 18451090 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442568 25 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=1482.000000 s mm10.chr1_GL456221_random 141547 1 + 206961 T s rn5.chr9 92385976 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170381 1 - 10418462 C i speTri2.JH393335 C 0 I 2 s hg19.chr2 231159068 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537107 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493804 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715455 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677749 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086712 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766793 1 + 158406734 T i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28845406 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s tupBel1.scaffold_131864.1-63012 16699 1 + 63012 T i tupBel1.scaffold_131864.1-63012 C 0 N 0 s canFam3.chr25 42518841 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075654 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883379 1 + 84719076 C i equCab2.chr6 C 0 C 0 s xenTro3.GL174023 63134 1 - 79923 T i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 16385 8 + 18451090 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e tarSyr1.scaffold_76449 3786 7 + 9015 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442568 25 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=27657.000000 s mm10.chr1_GL456221_random 141548 4 + 206961 GTGA s rn5.chr9 92385977 4 + 121549591 GTGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170384 4 - 10418462 ATGA i speTri2.JH393335 I 2 C 0 s hg19.chr2 231159069 4 + 243199373 ATAA i hg19.chr2 C 0 I 1 s panTro4.chr2B 235537108 4 + 247518478 ATAA i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119493805 4 + 131632457 ATAA i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122715456 4 + 135000294 ACAA i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3677750 4 + 6458163 ATAA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94086713 4 + 106825570 ATAA i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146766794 4 + 158406734 ATAA i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 16393 4 + 18451090 ACAA i saiBol1.JH378144 I 8 I 1 s otoGar3.GL873532 28845407 4 - 32117204 GTAA i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42518842 4 + 51628933 ATAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075655 4 - 2169676 ATAA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883380 4 + 84719076 ATAA i equCab2.chr6 C 0 C 0 s xenTro3.GL174023 63135 4 - 79923 ACAG i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 22746 415 - 63237 I e tarSyr1.scaffold_76449 3786 7 + 9015 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442568 25 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=1225.000000 s mm10.chr1_GL456221_random 141552 1 + 206961 G s rn5.chr9 92385981 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170388 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s turTru2.JH486691 23161 1 - 63237 C i turTru2.JH486691 I 415 C 0 s canFam3.chr25 42518846 1 + 51628933 C i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075659 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883384 1 + 84719076 C i equCab2.chr6 C 0 C 0 s xenTro3.GL174023 63139 1 - 79923 C i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 16397 1 + 18451090 I e ponAbe2.chr2b 122715460 1 + 135000294 I e otoGar3.GL873532 28845411 1 - 32117204 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e rheMac3.chr12 94086717 1 + 106825570 I e tarSyr1.scaffold_76449 3786 7 + 9015 I e nomLeu2.GL397366 3677754 1 + 6458163 I e gorGor3.chr2B 119493809 1 + 131632457 I e panTro4.chr2B 235537112 1 + 247518478 I e hg19.chr2 231159073 1 + 243199373 I e calJac3.chr6 146766798 1 + 158406734 I e papHam1.scaffold13267 59440 491 + 66950 I e felCat5.chrC1 212442568 25 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128583 366 + 176633 I a score=6232.000000 s mm10.chr1_GL456221_random 141553 2 + 206961 -TG s rn5.chr9 92385982 1 + 121549591 -T- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170389 1 - 10418462 -T- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159074 1 + 243199373 -T- i hg19.chr2 I 1 I 3 s panTro4.chr2B 235537113 1 + 247518478 -T- i panTro4.chr2B I 1 I 3 s gorGor3.chr2B 119493810 1 + 131632457 -T- i gorGor3.chr2B I 1 I 3 s ponAbe2.chr2b 122715461 1 + 135000294 -T- i ponAbe2.chr2b I 1 I 3 s nomLeu2.GL397366 3677755 1 + 6458163 -T- i nomLeu2.GL397366 I 1 I 3 s rheMac3.chr12 94086718 1 + 106825570 -T- i rheMac3.chr12 I 1 I 3 s papHam1.scaffold13267 59931 1 + 66950 -T- i papHam1.scaffold13267 I 491 I 9 s calJac3.chr6 146766799 1 + 158406734 -T- i calJac3.chr6 I 1 I 3 s saiBol1.JH378144 16398 1 + 18451090 -T- i saiBol1.JH378144 I 1 I 3 s tarSyr1.scaffold_76449 3793 1 + 9015 -T- i tarSyr1.scaffold_76449 I 7 C 0 s micMur1.scaffold_3075 128949 1 + 176633 -T- i micMur1.scaffold_3075 I 366 I 1802 s otoGar3.GL873532 28845412 1 - 32117204 -T- i otoGar3.GL873532 I 1 I 1 s turTru2.JH486691 23162 1 - 63237 -T- i turTru2.JH486691 C 0 I 115 s canFam3.chr25 42518847 1 + 51628933 -T- i canFam3.chr25 C 0 I 7 s ailMel1.GL192536.1 1075660 1 - 2169676 -T- i ailMel1.GL192536.1 C 0 I 7 s equCab2.chr6 17883385 1 + 84719076 -T- i equCab2.chr6 C 0 I 9 s xenTro3.GL174023 63140 2 - 79923 AC- i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e felCat5.chrC1 212442568 25 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I a score=8281.000000 s mm10.chr1_GL456221_random 141555 1 + 206961 T s rn5.chr9 92385983 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170390 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159078 1 + 243199373 T i hg19.chr2 I 3 C 0 s panTro4.chr2B 235537117 1 + 247518478 T i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119493814 1 + 131632457 T i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122715465 1 + 135000294 T i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3677759 1 + 6458163 T i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94086722 1 + 106825570 T i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146766803 1 + 158406734 T i calJac3.chr6 I 3 C 0 s saiBol1.JH378144 16402 1 + 18451090 T i saiBol1.JH378144 I 3 C 0 s tarSyr1.scaffold_76449 3794 1 + 9015 T i tarSyr1.scaffold_76449 C 0 N 0 s otoGar3.GL873532 28845414 1 - 32117204 T i otoGar3.GL873532 I 1 C 0 s xenTro3.GL174023 63142 1 - 79923 T i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e canFam3.chr25 42518848 7 + 51628933 I e ailMel1.GL192536.1 1075661 7 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e myoLuc2.GL429770 26117306 159 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e equCab2.chr6 17883386 9 + 84719076 I e papHam1.scaffold13267 59932 9 + 66950 I e felCat5.chrC1 212442568 25 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=4556.000000 s mm10.chr1_GL456221_random 141556 1 + 206961 -T s rn5.chr9 92385984 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170391 1 - 10418462 -T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159079 1 + 243199373 -T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537118 1 + 247518478 -T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493815 1 + 131632457 -T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715466 1 + 135000294 -T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677760 1 + 6458163 -T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086723 1 + 106825570 -T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766804 1 + 158406734 -T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16403 1 + 18451090 -T i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845415 1 - 32117204 -T i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212442593 1 + 221441202 -T i felCat5.chrC1 I 25 C 0 s canFam3.chr25 42518855 1 + 51628933 -T i canFam3.chr25 I 7 C 0 s ailMel1.GL192536.1 1075668 1 - 2169676 -T i ailMel1.GL192536.1 I 7 C 0 s equCab2.chr6 17883395 1 + 84719076 -T i equCab2.chr6 I 9 C 0 s myoLuc2.GL429770 26117465 1 + 30916457 -T i myoLuc2.GL429770 I 159 N 0 s xenTro3.GL174023 63143 1 - 79923 A- i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e papHam1.scaffold13267 59932 9 + 66950 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=13923.000000 s mm10.chr1_GL456221_random 141557 1 + 206961 A s rn5.chr9 92385985 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170392 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159080 1 + 243199373 A i hg19.chr2 C 0 I 3 s panTro4.chr2B 235537119 1 + 247518478 A i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119493816 1 + 131632457 A i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122715467 1 + 135000294 A i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3677761 1 + 6458163 A i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94086724 1 + 106825570 A i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146766805 1 + 158406734 A i calJac3.chr6 C 0 I 3 s saiBol1.JH378144 16404 1 + 18451090 A i saiBol1.JH378144 C 0 I 3 s otoGar3.GL873532 28845416 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212442594 1 + 221441202 A i felCat5.chrC1 C 0 I 2 s canFam3.chr25 42518856 1 + 51628933 A i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1075669 1 - 2169676 A i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17883396 1 + 84719076 A i equCab2.chr6 C 0 I 3 s eriEur1.scaffold_375106 40207 1 - 46785 A i eriEur1.scaffold_375106 N 0 N 0 s xenTro3.GL174023 63144 1 - 79923 A i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e papHam1.scaffold13267 59932 9 + 66950 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=-2515.000000 s mm10.chr1_GL456221_random 141558 1 + 206961 -C s rn5.chr9 92385986 1 + 121549591 -C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170393 1 - 10418462 -C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159084 1 + 243199373 -T i hg19.chr2 I 3 C 0 s panTro4.chr2B 235537123 1 + 247518478 -T i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119493820 1 + 131632457 -T i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122715471 1 + 135000294 -T i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3677765 1 + 6458163 -T i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94086728 1 + 106825570 -T i rheMac3.chr12 I 3 C 0 s papHam1.scaffold13267 59941 1 + 66950 -T i papHam1.scaffold13267 I 9 C 0 s calJac3.chr6 146766809 1 + 158406734 -T i calJac3.chr6 I 3 C 0 s saiBol1.JH378144 16408 1 + 18451090 -T i saiBol1.JH378144 I 3 C 0 s otoGar3.GL873532 28845417 1 - 32117204 -T i otoGar3.GL873532 C 0 C 0 s xenTro3.GL174023 63145 1 - 79923 A- i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e canFam3.chr25 42518857 2 + 51628933 I e ailMel1.GL192536.1 1075670 2 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e equCab2.chr6 17883397 3 + 84719076 I e felCat5.chrC1 212442595 2 + 221441202 I e choHof1.scaffold_14362 17800 374 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=3291.000000 s mm10.chr1_GL456221_random 141559 1 + 206961 A s rn5.chr9 92385987 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170394 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159085 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537124 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493821 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715472 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677766 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086729 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 59942 1 + 66950 G i papHam1.scaffold13267 C 0 I 1364 s calJac3.chr6 146766810 1 + 158406734 G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16409 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845418 1 - 32117204 A i otoGar3.GL873532 C 0 I 22 s choHof1.scaffold_14362 18174 1 + 23990 A i choHof1.scaffold_14362 I 374 C 0 s xenTro3.GL174023 63146 1 - 79923 A i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e canFam3.chr25 42518857 2 + 51628933 I e ailMel1.GL192536.1 1075670 2 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e equCab2.chr6 17883397 3 + 84719076 I e felCat5.chrC1 212442595 2 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=11037.000000 s mm10.chr1_GL456221_random 141560 4 + 206961 CACA s rn5.chr9 92385988 4 + 121549591 TACA i rn5.chr9 C 0 I 3 s speTri2.JH393335 4170395 4 - 10418462 TGTA i speTri2.JH393335 C 0 I 2 s hg19.chr2 231159086 2 + 243199373 --CA i hg19.chr2 C 0 I 2 s panTro4.chr2B 235537125 2 + 247518478 --CA i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119493822 2 + 131632457 --CA i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122715473 2 + 135000294 --TA i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3677767 2 + 6458163 --CA i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94086730 2 + 106825570 --CA i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146766811 2 + 158406734 --CA i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 16410 2 + 18451090 --TA i saiBol1.JH378144 C 0 I 2 s otoGar3.GL873532 28845441 2 - 32117204 --CA i otoGar3.GL873532 I 22 I 2 s felCat5.chrC1 212442597 4 + 221441202 TACA i felCat5.chrC1 I 2 C 0 s canFam3.chr25 42518859 4 + 51628933 TACA i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1075672 4 - 2169676 TACA i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17883400 4 + 84719076 CATG i equCab2.chr6 I 3 C 0 s choHof1.scaffold_14362 18175 4 + 23990 TGTG i choHof1.scaffold_14362 C 0 I 1 s xenTro3.GL174023 63147 4 - 79923 AATG i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=-11439.000000 s mm10.chr1_GL456221_random 141564 2 + 206961 GT- s rn5.chr9 92385995 2 + 121549591 GT- i rn5.chr9 I 3 C 0 s speTri2.JH393335 4170401 2 - 10418462 GT- i speTri2.JH393335 I 2 C 0 s hg19.chr2 231159090 2 + 243199373 AA- i hg19.chr2 I 2 C 0 s panTro4.chr2B 235537129 2 + 247518478 AA- i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119493826 2 + 131632457 AA- i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122715477 2 + 135000294 AC- i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3677771 2 + 6458163 AA- i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94086734 2 + 106825570 AA- i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146766815 2 + 158406734 GA- i calJac3.chr6 I 2 C 0 s saiBol1.JH378144 16414 2 + 18451090 AC- i saiBol1.JH378144 I 2 C 0 s otoGar3.GL873532 28845445 2 - 32117204 GA- i otoGar3.GL873532 I 2 I 11 s felCat5.chrC1 212442601 1 + 221441202 -A- i felCat5.chrC1 C 0 I 1 s canFam3.chr25 42518863 1 + 51628933 -A- i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1075676 1 - 2169676 -C- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17883404 1 + 84719076 -C- i equCab2.chr6 C 0 I 1 s choHof1.scaffold_14362 18180 2 + 23990 AA- i choHof1.scaffold_14362 I 1 C 0 s xenTro3.GL174023 63151 2 - 79923 -CT i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=5170.000000 s mm10.chr1_GL456221_random 141566 8 + 206961 ATCTTA-CT- s rn5.chr9 92385997 8 + 121549591 ATCTTA-CT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170403 8 - 10418462 GTCTTA-TT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159092 9 + 243199373 ATCTTATTT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537131 9 + 247518478 ATCTTATTT- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493828 9 + 131632457 ATCTTATTT- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715479 9 + 135000294 ATCTTATTT- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677773 9 + 6458163 ATCTTATTT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086736 9 + 106825570 ATCTTATTT- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766817 9 + 158406734 ATCTTCTTT- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16416 9 + 18451090 ATTTTATTT- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845458 9 - 32117204 ACCTTATTT- i otoGar3.GL873532 I 11 C 0 s felCat5.chrC1 212442603 4 + 221441202 -----TATA- i felCat5.chrC1 I 1 C 0 s canFam3.chr25 42518865 4 + 51628933 -----TATT- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1075678 4 - 2169676 -----TACT- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17883406 4 + 84719076 -----ATTT- i equCab2.chr6 I 1 C 0 s choHof1.scaffold_14362 18182 8 + 23990 AGCTTACT-- i choHof1.scaffold_14362 C 0 I 1346 s xenTro3.GL174023 63153 8 - 79923 --CTTATATC i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=10205.000000 s mm10.chr1_GL456221_random 141574 2 + 206961 GA- s rn5.chr9 92386005 2 + 121549591 GA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170411 2 - 10418462 TA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159101 2 + 243199373 TA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537140 2 + 247518478 TA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493837 2 + 131632457 TA- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715488 2 + 135000294 TA- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677782 2 + 6458163 TA- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086745 2 + 106825570 TA- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766826 2 + 158406734 TA- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16425 2 + 18451090 TA- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845467 2 - 32117204 TA- i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212442607 2 + 221441202 TA- i felCat5.chrC1 C 0 I 1402 s canFam3.chr25 42518869 2 + 51628933 TA- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075682 2 - 2169676 TA- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883410 2 + 84719076 TA- i equCab2.chr6 C 0 C 0 s xenTro3.GL174023 63161 2 - 79923 -AA i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=74491.000000 s mm10.chr1_GL456221_random 141576 24 + 206961 TGGCACCTA-AATTGGGTTGTTATC--- s rn5.chr9 92386007 24 + 121549591 TGGTGCCTG-AGTTGGGCTGTTATA--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170413 24 - 10418462 TGGCATCTC-AAGTGGGTAATCATA--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159103 25 + 243199373 TGGGGTCTGAAATTGGGTAGGAATA--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537142 25 + 247518478 TGGGGTCTGAAATTGGGTAGGAATA--- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493839 25 + 131632457 TGGTGTCTGAAATTGGGTAGGAATA--- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715490 25 + 135000294 TGGAGTCTCCAATTGGGTAACTATA--- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677784 25 + 6458163 TGGGGTCTGAAATTGGGTAAGAATA--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086747 25 + 106825570 TGGGGTCTGAAATTGGGTAAATATA--- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766828 25 + 158406734 TAGGGTCTGAAATTGGGTATTTATA--- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16427 25 + 18451090 TGAAGCGTCCAATTGCATAATTATA--- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845469 24 - 32117204 TGGAGTTTG-AATTTGGTAATTATA--- i otoGar3.GL873532 C 0 I 21 s canFam3.chr25 42518871 23 + 51628933 -TAGTTCTT-AATTGGGTAATTATA--- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075684 23 - 2169676 -TAGTTCTC-AATTGGGTAATTATA--- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883412 22 + 84719076 --TGGTCTC-AGTTGGGTAATTATA--- i equCab2.chr6 C 0 C 0 s xenTro3.GL174023 63163 24 - 79923 --AGAGCAC-AATT-CTTAGTTACCTTC i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=12363.000000 s mm10.chr1_GL456221_random 141600 17 + 206961 -CTTAATGTCAC----CTCTCA s rn5.chr9 92386031 15 + 121549591 -CTTA--GTCAC----CTCTCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170437 17 - 10418462 -AATAATCTTAT----ACCTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159128 12 + 243199373 ------ATTAAG----CTTTCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537167 12 + 247518478 ------ATTAAG----CTTTCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493864 12 + 131632457 ------ATTAAG----CTTTCA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715515 12 + 135000294 ------ATTAAG----CTTTCA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677809 12 + 6458163 ------ATTAAG----CTTTCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086772 12 + 106825570 ------ATTAAG----CTTTCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766853 16 + 158406734 ------ATTAAATAATCTTCCA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16452 12 + 18451090 ------ATTAAG----CCTTCA i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42518894 12 + 51628933 ------ATTAAG----CTTCCT i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1075707 12 - 2169676 ------ATTAAG----CTTCCT i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17883434 12 + 84719076 ------ATTAAG----CCTCCT i equCab2.chr6 C 0 I 1 s xenTro3.GL174023 63187 16 - 79923 CTTTGTTTTAAT----TCTT-- i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e otoGar3.GL873532 28845493 21 - 32117204 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=-39471.000000 s mm10.chr1_GL456221_random 141617 46 + 206961 TTTCCTCCTCTACTGCCTTCTTTTCT----GGTTTTCA---GCCTGTGTCTTC--- s rn5.chr9 92386046 42 + 121549591 TTTCCTCCTCTACTGCTTTCTTTGCT----GGTTTTCA---GCCTGTG----C--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170454 41 - 10418462 TCCACCCCTTCCTTTATTTTTTCTTT----CATTTTGG---ATGGGGG-------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159140 42 + 243199373 ---CCTTCTTCACTACTCACCTTAAAATA-CTTTTTGC---ATGTATT----C--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537179 42 + 247518478 ---CCTTCTTCACTACTCACCTTAAAATA-CTTTTTGC---ATGTATT----C--- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493876 42 + 131632457 ---CCTTCTTCACTACTCACCTTAAAATA-CTTTTTGC---ATGTATT----C--- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715527 40 + 135000294 ---CCTTCTCCACTTCCCACttataaat---tttttaa---atatatG----C--- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677821 42 + 6458163 ---CCTTCTTCACTACCTACCTTAAAATA-CTTTTTGC---GTGTATT----C--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086784 42 + 106825570 ---CCTTCATCACTACCCACCTTAAAATA-CACTTTGC---ATGTATT----C--- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766869 43 + 158406734 ---CCTCCCCTACTACCCACCTTAAAACATTTTTTTTG---GTATATG----C--- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16464 41 + 18451090 ---CCTTCTCCATTACCTACGTTTAATA--TTTTTTTG---ATATATG----T--- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845514 16 - 32117204 ---------TCACTTC--------------CTCT----------AGTT----C--- i otoGar3.GL873532 I 21 C 0 s canFam3.chr25 42518907 32 + 51628933 -------CGCCCCTCCCTCCCTT-------TTTGGGGG---GCATGTG----A--- i canFam3.chr25 I 1 I 8 s ailMel1.GL192536.1 1075720 32 - 2169676 -------CAACCCTCCTCTCCCC-------TTTTTTGG---GCGTGTG----A--- i ailMel1.GL192536.1 I 1 I 8 s equCab2.chr6 17883447 37 + 84719076 -----TTCTACCTCCACCCCCCC-------TTTGGGGGGAAGCTTGTG----C--- i equCab2.chr6 I 1 I 8 s xenTro3.GL174023 63203 39 - 79923 ----CTCCTTAATTTTCTTTTTAG------TTTTATAA---CTTTACT----TTCC i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 12981 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23163 115 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=20385.000000 s mm10.chr1_GL456221_random 141663 4 + 206961 CTTC s rn5.chr9 92386088 4 + 121549591 CTTC i rn5.chr9 C 0 C 0 s hg19.chr2 231159182 4 + 243199373 CTTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537221 4 + 247518478 CTTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493918 4 + 131632457 CTTC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715567 4 + 135000294 CTTC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677863 4 + 6458163 CTTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086826 4 + 106825570 CTTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766912 4 + 158406734 CTTC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16505 3 + 18451090 C-TC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845530 4 - 32117204 CTTC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518947 3 + 51628933 -TTG i canFam3.chr25 I 8 I 2 s ailMel1.GL192536.1 1075760 3 - 2169676 -TTG i ailMel1.GL192536.1 I 8 I 2 s equCab2.chr6 17883492 3 + 84719076 -TTG i equCab2.chr6 I 8 I 2 s pteVam1.scaffold_12135 13099 3 + 44403 -TTG i pteVam1.scaffold_12135 I 118 n 118 s xenTro3.GL174023 63242 4 - 79923 CTTC i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4170495 0 - 10418462 C e turTru2.JH486691 23163 115 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=-3736.000000 s mm10.chr1_GL456221_random 141667 1 + 206961 -C s rn5.chr9 92386092 1 + 121549591 -C i rn5.chr9 C 0 C 0 s hg19.chr2 231159186 1 + 243199373 -A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537225 1 + 247518478 -A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493922 1 + 131632457 -A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715571 1 + 135000294 -A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677867 1 + 6458163 -A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086830 1 + 106825570 -A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766916 1 + 158406734 -A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16508 1 + 18451090 -A i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845534 1 - 32117204 -A i otoGar3.GL873532 C 0 C 0 s xenTro3.GL174023 63246 1 - 79923 C- i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e canFam3.chr25 42518950 2 + 51628933 I e ailMel1.GL192536.1 1075763 2 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 13102 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4170495 0 - 10418462 C e turTru2.JH486691 23163 115 - 63237 I e equCab2.chr6 17883495 2 + 84719076 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=-6059.000000 s mm10.chr1_GL456221_random 141668 3 + 206961 CCC s rn5.chr9 92386093 3 + 121549591 CTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170495 3 - 10418462 CAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159187 3 + 243199373 GAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537226 3 + 247518478 GAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493923 3 + 131632457 GAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715572 3 + 135000294 GAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677868 3 + 6458163 GAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086831 3 + 106825570 GAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146766917 3 + 158406734 GCA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16509 3 + 18451090 GAC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845535 3 - 32117204 GAA i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 23278 3 - 63237 TGC i turTru2.JH486691 I 115 I 777 s canFam3.chr25 42518952 2 + 51628933 -AC i canFam3.chr25 I 2 I 1 s ailMel1.GL192536.1 1075765 2 - 2169676 -AC i ailMel1.GL192536.1 I 2 I 1 s equCab2.chr6 17883497 2 + 84719076 -AC i equCab2.chr6 I 2 I 1 s xenTro3.GL174023 63247 3 - 79923 TAT i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 13102 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=125693.000000 s mm10.chr1_GL456221_random 141671 40 + 206961 ATGCTCTT------------------------GTA---------T-TGTGTGTAGAGCTACATCCTTCTTGAAT s rn5.chr9 92386096 40 + 121549591 ATGCTCCT------------------------GTA---------G-TGTGGGTAGAGCAAGATCTTCCTTGAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170498 60 - 10418462 ATGCACCTTCAGAATTGTGACTTTTGAGTACAATG---------C-TGTATATAAAGCTAGGTCTTCTT----T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159190 48 + 243199373 TCGCTAAT------------------------TTG-AACACTAAA-TGTATATAAAGCTAGGTCCTGTTTGGAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537229 48 + 247518478 TCGCTAAT------------------------TTG-AACACTAAA-TGTATATAAAGCTAGGTCCTGTTTGGAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493926 48 + 131632457 TCGCTAAT------------------------TTG-AACACTAAA-TGTATATAAAGCTAGGTCCTCTTTGGAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715575 48 + 135000294 TTGCTACT------------------------TTG-AATACTTTG-TGTATATAAAGCTAGGTCCTCTTTGGAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677871 46 + 6458163 TCGCTAAT------------------------TTG-AACACTAAA---TATATAAAGCTAGGTCCTCTTTGGAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94086834 49 + 106825570 TTGCTAAT------------------------TTTCAATGCTAAA-TGTATATAAAGCTAGGTCCTCTTTGGAT i rheMac3.chr12 C 0 I 715 s calJac3.chr6 146766920 46 + 158406734 TTGCTAAT------------------------TTG-AACAGTAAA-TATATATGAAGCTAGGCCCTCTTTGG-- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16512 48 + 18451090 TTACTACT------------------------TTG-AATACTGCA-TCTGTCTAAAGCTAGGTCCTCTTTGGAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845538 49 - 32117204 TGGCTACT------------------------TTG-AATACTATGTTGTATATAAAGCTAGATCTTCCTTGAAT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518955 38 + 51628933 --------------------------------TTG-AACATTATGCCATATAAAAGGCAAGA---TCTTTGAAT i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1075768 41 - 2169676 --------------------------------TTG-AACGTTATGCTGCACAAAAGGCAAGATCTTCTTTGAAT i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17883500 41 + 84719076 --------------------------------ATG-AACAATATGTTGTATATAAGGCAAGGTCTTCTTTGAAG i equCab2.chr6 I 1 C 0 s xenTro3.GL174023 63250 35 - 79923 -------------------------------------TCACTAC--TGTATATACACTTATTCCCTTCTTAAAT i xenTro3.GL174023 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 13102 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23281 777 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=16195.000000 s mm10.chr1_GL456221_random 141711 7 + 206961 GTTGACT s rn5.chr9 92386136 7 + 121549591 GTTAACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170558 7 - 10418462 GTTAATC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159238 5 + 243199373 --TCAAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537277 5 + 247518478 --TCAAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493974 5 + 131632457 --TCAAC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715623 5 + 135000294 --TAAAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677917 5 + 6458163 --TCAAC i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146766966 7 + 158406734 ATTAAAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16560 7 + 18451090 ATTAAAC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845587 7 - 32117204 ATTAAAC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42518993 7 + 51628933 GGTAAAC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075809 7 - 2169676 GGTAAAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883541 7 + 84719076 GGTAATC i equCab2.chr6 C 0 C 0 s xenTro3.GL174023 63285 7 - 79923 GTTGCCT i xenTro3.GL174023 C 0 N 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 13102 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23281 777 - 63237 I e rheMac3.chr12 94086883 715 + 106825570 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=61541.000000 s mm10.chr1_GL456221_random 141718 15 + 206961 GCTTTAAGTTGGAGA s rn5.chr9 92386143 15 + 121549591 GCTTTAAGTTGGAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170565 15 - 10418462 CATGAGAAGTGGAGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159243 15 + 243199373 CATTTCATATGAAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537282 15 + 247518478 CATTTCATATGAAGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493979 15 + 131632457 CGTTTCATATGAAGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715628 15 + 135000294 CATATTAGATGGAGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677922 15 + 6458163 CATTTCATATGAAGA i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146766973 15 + 158406734 AATTTCATATGAAGA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16567 15 + 18451090 CATATCAGATGGAGA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28845594 15 - 32117204 CAGTTAAGATGGAGA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42519000 15 + 51628933 CATTTAAGGTAGAGA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075816 15 - 2169676 CGTTTGAGGTGGAGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17883548 15 + 84719076 CATTTGAGATGGAGA i equCab2.chr6 C 0 I 715 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 13102 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23281 777 - 63237 I e rheMac3.chr12 94086883 715 + 106825570 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=77780.000000 s mm10.chr1_GL456221_random 141733 16 + 206961 AGTTAGTATGCTATTA s rn5.chr9 92386158 16 + 121549591 TGTTAGAGAGCCAGCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170580 16 - 10418462 TGATAGGGAGCCATCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159258 16 + 243199373 TGATAAGGAGCCATCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537297 16 + 247518478 TGATAAGGAGCCATCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119493994 16 + 131632457 TGATAAGGAGCCATCA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122715643 16 + 135000294 TGCTGAGGAGCCATCA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677937 16 + 6458163 TGATAAGGAGCCATCA i nomLeu2.GL397366 C 0 C 0 s calJac3.chr6 146766988 16 + 158406734 TGATAAGGAATCATCA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 16582 16 + 18451090 TGCTGAGAAGCCATCA i saiBol1.JH378144 C 0 I 1013 s otoGar3.GL873532 28845609 16 - 32117204 TGACAAGGAGCCATCA i otoGar3.GL873532 C 0 I 679 s canFam3.chr25 42519015 16 + 51628933 CGATAAGGAACCATCA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075831 16 - 2169676 TGATAAGGAGCCATCG i ailMel1.GL192536.1 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 13102 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23281 777 - 63237 I e rheMac3.chr12 94086883 715 + 106825570 I e equCab2.chr6 17883563 715 + 84719076 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=1480.000000 s mm10.chr1_GL456221_random 141749 1 + 206961 G s rn5.chr9 92386174 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170596 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159274 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537313 1 + 247518478 G i panTro4.chr2B C 0 I 674 s gorGor3.chr2B 119494010 1 + 131632457 G i gorGor3.chr2B C 0 I 674 s ponAbe2.chr2b 122715659 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3677953 1 + 6458163 G i nomLeu2.GL397366 C 0 I 674 s calJac3.chr6 146767004 1 + 158406734 A i calJac3.chr6 C 0 C 0 s canFam3.chr25 42519031 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075847 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 16598 1013 + 18451090 I e otoGar3.GL873532 28845625 679 - 32117204 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_12135 13102 118 + 44403 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 23281 777 - 63237 I e rheMac3.chr12 94086883 715 + 106825570 I e equCab2.chr6 17883563 715 + 84719076 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=56558.000000 s mm10.chr1_GL456221_random 141750 7 + 206961 CATAGAC s rn5.chr9 92386175 7 + 121549591 CATAGAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170597 7 - 10418462 AATAGAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159275 7 + 243199373 AATATAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235537988 7 + 247518478 CACAGAC i panTro4.chr2B I 674 C 0 s gorGor3.chr2B 119494685 7 + 131632457 CACAGAC i gorGor3.chr2B I 674 C 0 s ponAbe2.chr2b 122715660 7 + 135000294 AACAAAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678628 7 + 6458163 CACAGAC i nomLeu2.GL397366 I 674 C 0 s rheMac3.chr12 94087598 7 + 106825570 CACAGAT i rheMac3.chr12 I 715 C 0 s calJac3.chr6 146767005 7 + 158406734 AATAGAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17611 7 + 18451090 CACAGAC i saiBol1.JH378144 I 1013 C 0 s otoGar3.GL873532 28846304 7 - 32117204 cactgac i otoGar3.GL873532 I 679 C 0 s turTru2.JH486691 24058 7 - 63237 CACAGAT i turTru2.JH486691 I 777 I 2 s canFam3.chr25 42519032 7 + 51628933 AACAGAC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1075848 7 - 2169676 AACAGAC i ailMel1.GL192536.1 C 0 I 980 s equCab2.chr6 17884278 7 + 84719076 CACAGAC i equCab2.chr6 I 715 I 2 s pteVam1.scaffold_10686 27330 7 + 49512 CACAGAC i pteVam1.scaffold_10686 I 3289 I 2 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e oviAri1.chr2 244338562 0 + 263237078 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=15672.000000 s mm10.chr1_GL456221_random 141757 3 + 206961 TTC s rn5.chr9 92386182 3 + 121549591 TTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170604 3 - 10418462 CTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231159282 3 + 243199373 GTC i hg19.chr2 C 0 I 677 s panTro4.chr2B 235537995 3 + 247518478 TTC i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119494692 3 + 131632457 TTC i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122715667 3 + 135000294 CTC i ponAbe2.chr2b C 0 I 676 s nomLeu2.GL397366 3678635 3 + 6458163 TTC i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94087605 3 + 106825570 TTC i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146767012 3 + 158406734 CTC i calJac3.chr6 C 0 I 678 s saiBol1.JH378144 17618 3 + 18451090 TTC i saiBol1.JH378144 C 0 I 3 s otoGar3.GL873532 28846311 3 - 32117204 ttc i otoGar3.GL873532 C 0 I 3 s turTru2.JH486691 24067 3 - 63237 CTA i turTru2.JH486691 I 2 C 0 s canFam3.chr25 42519039 3 + 51628933 CTC i canFam3.chr25 C 0 C 0 s equCab2.chr6 17884287 3 + 84719076 CTA i equCab2.chr6 I 2 C 0 s pteVam1.scaffold_10686 27339 3 + 49512 CTA i pteVam1.scaffold_10686 I 2 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e ailMel1.GL192536.1 1075855 980 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e oviAri1.chr2 244338562 0 + 263237078 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=7845.000000 s mm10.chr1_GL456221_random 141760 1 + 206961 A s rn5.chr9 92386185 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4170607 1 - 10418462 A i speTri2.JH393335 C 0 I 771 s hg19.chr2 231159962 1 + 243199373 A i hg19.chr2 I 677 C 0 s panTro4.chr2B 235538001 1 + 247518478 A i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119494698 1 + 131632457 A i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122716346 1 + 135000294 A i ponAbe2.chr2b I 676 C 0 s nomLeu2.GL397366 3678641 1 + 6458163 A i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94087611 1 + 106825570 A i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146767693 1 + 158406734 A i calJac3.chr6 I 678 C 0 s saiBol1.JH378144 17624 1 + 18451090 A i saiBol1.JH378144 I 3 C 0 s otoGar3.GL873532 28846317 1 - 32117204 a i otoGar3.GL873532 I 3 C 0 s turTru2.JH486691 24070 1 - 63237 A i turTru2.JH486691 C 0 I 1410 s canFam3.chr25 42519042 1 + 51628933 A i canFam3.chr25 C 0 I 1426 s equCab2.chr6 17884290 1 + 84719076 A i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_10686 27342 1 + 49512 C i pteVam1.scaffold_10686 C 0 I 398 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e ailMel1.GL192536.1 1075855 980 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e oviAri1.chr2 244338562 0 + 263237078 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=21971.000000 s mm10.chr1_GL456221_random 141761 7 + 206961 ACAGGCC s rn5.chr9 92386186 7 + 121549591 ACAAGCC i rn5.chr9 C 0 C 0 s hg19.chr2 231159963 7 + 243199373 ACAGCTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538002 7 + 247518478 ACAGCTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119494699 7 + 131632457 ACAGCTC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716347 7 + 135000294 ACAGCTC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678642 7 + 6458163 ACAGCTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087612 7 + 106825570 ACAGCTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146767694 3 + 158406734 ACA---- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17625 7 + 18451090 ACAGGTC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846318 7 - 32117204 atagctc i otoGar3.GL873532 C 0 C 0 s equCab2.chr6 17884292 7 + 84719076 ATAGGTC i equCab2.chr6 I 1 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e canFam3.chr25 42519043 1426 + 51628933 I e ailMel1.GL192536.1 1075855 980 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 27343 398 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4170608 771 - 10418462 I e turTru2.JH486691 24071 1410 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=222981.000000 s mm10.chr1_GL456221_random 141768 82 + 206961 ACATATCACTGAACTCTGG--CTTCAAAGCTCACTAA----AAATCTGAACTCCAGGCTATCGTATAATTTGTCCTTGGCATTATTGT- s rn5.chr9 92386193 86 + 121549591 ACATATCACTGGACACTGG--CTTCATAGCTCACTGACTGAGAAACTGAACTCCAGGCTAGCATATAATTTGTCTTGGCCACTATTGT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171379 65 - 10418462 AGACATCACTGACCTCTGG-ACTTCATG------TTA----GAATTTGAAATCTCAGCCTTTGCAATATCAG------------TGGT- i speTri2.JH393335 I 771 C 0 s hg19.chr2 231159970 72 + 243199373 ACACATAGCTAGCCACTAA-GCTTCATATTCCACTGG----GAACCTGAGATGCAGGCCTTTACATTATCTG-----------ATATA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538009 72 + 247518478 ACACATAGCTAGCCACTAA-GCTTCATATTCCACTGG----GAACCTGAGATGCGGGCCTTTACATTATCTG-----------ATATA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119494706 72 + 131632457 ACACATAGCTAGCCACTAA-GCTTCATATTCCACTGG----GAACCTGAGATCCAGGCCTTTACATTATCTG-----------ATATA- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716354 72 + 135000294 ACACATAGCTAGCCACTAA-GCTTCATATTCCACTGG----GAACCTGAGATCCAGGCCTTTACATTATCTG-----------ATATA- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678649 72 + 6458163 ACACGTAGCTAGCCACCAA-GTTTCATATTCCACTGG----GAACCTGAGATCCAGGCCTTTACATTATCTG-----------ATATA- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087619 72 + 106825570 ACACATAGCTAGCCACTGA-GCTTCATATTCCACTGG----GAACCTGGGATTCAAGTGTTTATATGATCAG-----------ATATA- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146767697 61 + 158406734 -----------GCCACTGG-GCTTCATATTCTACTAG----GAACCTGAGATCCAGGCCTTTGCATTAGCCA-----------ATGTT- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17632 72 + 18451090 ACACACAGCTCGTCCTTGG-GCCTCATATTCCGCTGG----GAACCTGGGATCTGGGCGTTTATATTATCTG-----------ATATT- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846325 64 - 32117204 actcataactagtcactgg-gcttcatattccaccag----gaagctgagatttaggcctttgaatTAT-------------------- i otoGar3.GL873532 C 0 C 0 s equCab2.chr6 17884299 74 + 84719076 ACCTATAGCTGGCCAATGGAACTTCATCTTCCGCTGG----GAATTTGAGGTCCAGGCCTTTACATTATCTG-----------ATGTTG i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e canFam3.chr25 42519043 1426 + 51628933 I e ailMel1.GL192536.1 1075855 980 - 2169676 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 27343 398 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=739070.000000 s mm10.chr1_GL456221_random 141850 160 + 206961 CTAGCTTGCTTGAAT-TCTGAATCCCCAGGATGTTTTG-----------CCCACTGCATTTTCTAGAAGGAAGCTACGATATAACCTGTCCAACAATTACTTTAAAGGCCTGTA-----CCTCTA-CCTTCCCCAGCATGCTAAGAGCATCACAGTCTGGGTCTCT-------------------CAAACAA---------------------------------GCTAG s rn5.chr9 92386279 159 + 121549591 CAAGCTTGCTTGAAC-TCTGAATCCCCCAGACATTTCA-----------TCCACTCTGTTT-CTAGAAGTAAGCTCTGATCTAACCTGCTCAACAATTACTTTAAAGGCCAGTG-----CCTCTG-TCTTCCCCCATAGGCCAAGAGTATCTCAGCCTGGATCGCT-------------------CAAACAA---------------------------------GCTAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171444 159 - 10418462 CTCACTGGTTTGAAC-TCTCAGCCCCTGGAATATTTCA-----------TCCAATGGGTTTCCTAAAAGGAGACTATT-TTTTGCCTACTTGGTGAGTGCTTTAAAGACAAGTG-----GCTCTA-ACTTTCCCAAGGTGTCAAGAGTAACTCAGACCACATTATG-------------------AGAATGA---------------------------------GCTGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160042 160 + 243199373 CTGGCTGATTTGAAT-TTTCAGCCACTGAGACATTTCA-----------TCCACTGGGTTTCCCGAAGGGAAACTATGATGTCACCTATTCAGTGACTACACTAAAGACCAGCA-----TCTCTA-CCTTTCACCGGGTGCCAAGAGTAACTGAGTCTGGATGACC-------------------CAAATGA---------------------------------GCTGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538081 160 + 247518478 CTGGCTGATTTGAAT-TTTCAGCCACTGAGACATTTCA-----------TCCACTGGGTTTCCCGAAGGGAAACTATGATGTCACCTATTCAGTGACTACACTAAAGACCAGCA-----TCTCTA-CCTTTCACTGGGTGCCAAGAGTAACTGAGTCTGGATGACC-------------------CAAATGA---------------------------------GCTGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119494778 160 + 131632457 CTGGCTGATTTGAAT-TCTCAGCCACTGAGACATTTCA-----------TCCACTGGGTTTCCCGAAGGGAAACTATGATGTCACCTATTCAGTGACTACACTAAAGACCAGCA-----ACTCTA-CCTTTCGCCAGGTGCCAAGAGTAACTGAGTCTGGATGACC-------------------CAAACGA---------------------------------GCTGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716426 160 + 135000294 CTGGCTGATTTGAAT-TCTCAGCCACTGAGACATTTCA-----------TCCACTGGTTTTCCTGAAGGGAAACTATTATGTCACCTATTCAGTGAGTACACTAAAGACCAGCA-----ACTCTA-CCTTTCCCCAGGTGCCAGGAGTAACTCAGCCTGGATGACC-------------------CAAATAA---------------------------------GCTGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678721 160 + 6458163 CTGGCTGATTTGAAT-TCTCAGCCACTGAGACATTTCA-----------TCCACTGGGTTTCCCGAAGGGAAACTATTATGTCACCTATTCAGTGAGTACACTAAAGACCAGCA-----ACTCTA-GCTTTCCCCAGGTGCCACGAGTAACTCAGCCTGGATGACC-------------------CAAATGA---------------------------------GCTGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087691 159 + 106825570 CTGGCTGATTTGAAT-TCTCAGTCACTGAGGTATTTCA-----------TCCACTGGGTTTCCCAAAGGGAAACTATTATGT-ACCTATTCAGTGAGTACACTAAACACTAGCA-----TCTCTA-CCTTTCCCCAGGTGCCAAGAGTAACTCAGCCTGGATGACC-------------------CAAATGA---------------------------------GCTGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146767758 164 + 158406734 CTGGCTGATTTGAAC-TCTCAG-CACTGAGACATTTTA-----------TCCACTGGGTTTCCTGAAGGGAAACTATTATGTCACCTATTCAGTGAGTACACTAAAGACCTTTAGGTACTCTCTA-CCTTTCCGCGGGTACCATGAGAAACTCAGTCTAAATGACC-------------------CAAATGA---------------------------------GCTGG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17704 160 + 18451090 CTGGCTGATTTGAAG-TCTCAGCCACTGAGACATTTCA-----------TACTCTGGGTTTCCTGAAGGGAAACTCTTGTGTCACCTATTCAGTAAGTACACTAAATACCAGCA-----TCTCTA-CTTTTCCCCAGGTGCCAAGAGCAACTCAGTCTAGATGACC-------------------CAAATGA---------------------------------ACTGG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846389 171 - 32117204 CTCGCTGATTTCAAC-TCTTGGCCACTAGAACATTTCGttcagtaggttttcagtaggttttcTGAAAGGTAAATATTATTTGACCTATTCAGTATGTAGACTAAAGACCAGGA-----TCTCTA-CCTTTCCCCAGGTGTCAAGAGTAACCCAGTCTAAGTTACA-------------------TAAAGAA---------------------------------GCTGG i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1076835 208 - 2169676 CTGGATCATTTGAACTTTTCAGTCCTTGGGACATTTCA-----------TCCCCTGGATTTCCTAAAGGGAAACTAGTATTTGATCT-TTTAG----TATTTTAAAGACCAGCA-----TCTGTA-TCATTTCCCAGATGTCTAGAGTTACTCAGTTTgggattcctgctggttcagtgggtagacatgtgactcttgtctcaggatcatgagttcaagtcccacgttgg i ailMel1.GL192536.1 I 980 I 80 s equCab2.chr6 17884373 153 + 84719076 TTGGCTGGTTTGAAC-TCTCATTCCTTGGGACATTTCA-----------TCCACTGGATTTCCTAAAGGGAAACTATTATTTGACCTATTTAT----TATGTTAAAGACCAGCA-----GCTGTACCCATTCCCCAGGTGTCAAGAGTT----GGTTTAGATTACC-------------------CAAGTGA---------------------------------GCTGG i equCab2.chr6 C 0 I 1 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e canFam3.chr25 42519043 1426 + 51628933 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 27343 398 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=63567.000000 s mm10.chr1_GL456221_random 142010 23 + 206961 AACTGTTCAGCCGATGAAACCAT- s rn5.chr9 92386438 23 + 121549591 AAATGTCTAGCCTATGAAACCCT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171603 23 - 10418462 AAATTTCCAACCAACAGAATCTA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160202 23 + 243199373 CAATTTCCGACTAACCGACTCTC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538241 23 + 247518478 CAATTTCCGACTAACCGACTCTC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119494938 23 + 131632457 CAATTTCCGACTAACCGACTCTC- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716586 23 + 135000294 CAATTTCCAACCAACCGACTCTC- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678881 23 + 6458163 CAATTTCCGAACAACTGATTCTC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087850 23 + 106825570 CAATTTCCAACCAACCGACTCTC- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146767922 23 + 158406734 CAATTGCCAACTAACTGACTCTG- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17864 23 + 18451090 CAATTGCCAACTAACTGACTCTC- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846560 21 - 32117204 AAACTTCCAGCTAAT--ATTCTA- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520469 23 + 51628933 -AACTTCTTAACAACAGGATCTAC i canFam3.chr25 I 1426 C 0 s ailMel1.GL192536.1 1077123 23 - 2169676 -GGCGACTTATGGACAGGATCTAC i ailMel1.GL192536.1 I 80 C 0 s equCab2.chr6 17884527 22 + 84719076 -AACTTCCTATCAACAGGATCTA- i equCab2.chr6 I 1 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 27343 398 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212442609 1402 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=10035.000000 s mm10.chr1_GL456221_random 142033 1 + 206961 C s rn5.chr9 92386461 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171626 1 - 10418462 C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160225 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538264 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119494961 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716609 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678904 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087873 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146767945 1 + 158406734 T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17887 1 + 18451090 C i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846581 1 - 32117204 C i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212444011 1 + 221441202 C i felCat5.chrC1 I 1402 I 40 s canFam3.chr25 42520492 1 + 51628933 C i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077146 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17884549 1 + 84719076 C i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 27343 398 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=259617.000000 s mm10.chr1_GL456221_random 142034 50 + 206961 CTTAATTCTTGGGTGCAGTATTTCATAGCAACAAGAGGCAGTTGACTCT-T s rn5.chr9 92386462 50 + 121549591 CTTAGTTCTTGGGTGCAGTATTTCATAGCAACAAGGGGCGGTTGCCTCT-T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171627 47 - 10418462 CCTA--TCATGAGTGCAATGCTTGGC--CTACAAGCTGCAGTTGCCTCTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160226 51 + 243199373 CTCTATTCTGGGGTGCAAAACTTAGCAGCGACAAGGTGCAGTTGCCTCTAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538265 51 + 247518478 CTCTATTCTGGGGTGCAAAACTTAGCAGCGACAAGGTGCAGTTGCCTCTAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119494962 51 + 131632457 CTCTATTCTGGGGTGCAACACTTAGCAGCAACAAGCTGCAGTTGCCTCTAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716610 51 + 135000294 CTCTATTCAGGGGTGCAACACTTAGCAGCAAGAAGCTGCAGTTGCCTCTAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678905 51 + 6458163 CCCTATTCAGGGGTGCAACACTTAGCAGCAACAAGCTGCAGTTGCCTCTAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087874 51 + 106825570 CTCTCTTCTGGGGTGCAACACTTAGCAGCAACAAGCTGCAGTTGCCTCTAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146767946 51 + 158406734 CCCTATTCTGGGATGTAACACTTTGCAGCAACAAGCTGCCCTTGCCTCTAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17888 51 + 18451090 TCTTATTCTGGGATGCAACACTTAGCAGCAGCAGGCTGCAGTTGACTTCAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846582 51 - 32117204 CCTTATTTGTGGGTGCGAAACTTTGCAGCAACAAGCTTCTGTTGCCTTTGT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520493 50 + 51628933 CTTTATCTGTGGGTGTAACACTTTTCAGCAACAAGCCTCAGCTGCCTCTA- i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1077147 49 - 2169676 C-TTATCCATGGGTGCAACACTTTTCAGCAACAAGCCTCAGCTGCCTCTA- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17884550 50 + 84719076 CCTTATCCATGGGTGTGACACCTTTTAGCAACAAGCTGCTGTTGCCTCTA- i equCab2.chr6 C 0 I 1 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 27343 398 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212444012 40 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=9555.000000 s mm10.chr1_GL456221_random 142084 1 + 206961 A s rn5.chr9 92386512 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171674 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160277 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538316 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495013 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716661 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678956 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087925 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146767997 1 + 158406734 A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17939 1 + 18451090 A i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846633 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212444052 1 + 221441202 A i felCat5.chrC1 I 40 I 535 s canFam3.chr25 42520544 1 + 51628933 A i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1077197 1 - 2169676 A i ailMel1.GL192536.1 I 1 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 27343 398 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e equCab2.chr6 17884600 1 + 84719076 I e papHam1.scaffold13267 59943 1364 + 66950 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=54813.000000 s mm10.chr1_GL456221_random 142085 8 + 206961 TTTTGTGT s rn5.chr9 92386513 8 + 121549591 TTTTGTGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171675 8 - 10418462 TATTGTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160278 8 + 243199373 TGTTGTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538317 8 + 247518478 TGTTGTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495014 8 + 131632457 TGTTGTGT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716662 8 + 135000294 TGTTGTGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678957 8 + 6458163 TGTTGTAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087926 8 + 106825570 TGTTGTGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146767998 8 + 158406734 TTTTGTGA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17940 8 + 18451090 TTCTGTGT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846634 8 - 32117204 TTTTATGT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520545 8 + 51628933 TTTTGTGT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077198 8 - 2169676 TTTTGTGT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17884601 8 + 84719076 ATTTGTGT i equCab2.chr6 I 1 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 10922 2147 + 24860 I e pteVam1.scaffold_10686 27343 398 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=7147.000000 s mm10.chr1_GL456221_random 142093 2 + 206961 TT- s rn5.chr9 92386521 2 + 121549591 CT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171683 2 - 10418462 CT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160286 2 + 243199373 CT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538325 2 + 247518478 CT- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495022 2 + 131632457 CT- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716670 2 + 135000294 CT- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678965 2 + 6458163 CT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087934 2 + 106825570 CT- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768006 2 + 158406734 AT- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17948 2 + 18451090 TT- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846642 2 - 32117204 CT- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520553 2 + 51628933 TT- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077206 2 - 2169676 CT- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17884609 2 + 84719076 CT- i equCab2.chr6 C 0 C 0 s proCap1.scaffold_27553 13069 2 + 24860 -TC i proCap1.scaffold_27553 I 2147 I 5573 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e pteVam1.scaffold_10686 27343 398 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=-7952.000000 s mm10.chr1_GL456221_random 142095 2 + 206961 C--T s rn5.chr9 92386523 2 + 121549591 C--T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171685 4 - 10418462 CCTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160288 4 + 243199373 CCTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538327 4 + 247518478 CCTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495024 4 + 131632457 CCTC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716672 4 + 135000294 CCTC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678967 4 + 6458163 CCTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087936 4 + 106825570 CCTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768008 4 + 158406734 CCTC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17950 4 + 18451090 CCTC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846644 4 - 32117204 CCTC i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_4435 65717 2 + 111236 CC-- i vicPac1.scaffold_4435 N 0 I 68 s canFam3.chr25 42520555 2 + 51628933 CT-- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077208 2 - 2169676 CC-- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17884611 2 + 84719076 CC-- i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27343 398 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=215887.000000 s mm10.chr1_GL456221_random 142097 59 + 206961 --GTTTGTAAGAACAGA--ATTCCCAGAGAAACAGAATCCAAGATCCATTTCCATTTTTACAA s rn5.chr9 92386525 59 + 121549591 --GTTTGTAAGAACAGA--ATTCCCAGTGAAACAGAATCCAAGATCCATTTCCATTTTCCTAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171689 60 - 10418462 --GTTGGTGAGAGCAGATGCTCTCCAGAGTGGCAGATCCCAGGATCCA-TTCTACTTCCATAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160292 60 + 243199373 --ATGGGGGAGAACAGAAGGTCCCTTAAGTGGCAGATCC-AGGATCCATTATGAACTCCATGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538331 60 + 247518478 --ATGGGGGAGAACAGAAGGTCCCTTAAGTGGCAGATCC-AGGATCCATTATGAACTCCATGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495028 60 + 131632457 --ATGGGGGAGAACAGAAGGTCGCTTAAGTGGCAGATCC-AGGATCCATTATGAACTCCATGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716676 58 + 135000294 --AT-GGGGAGAACAG-AGGTCCCCCAAGTGGCAGATCC-AGGATCCATTATGAACTCCATGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3678971 58 + 6458163 --AT-GAGGAGAACAG-AGGTCCCCCAAGTGGCAGATCC-AGGATCCATTATGAACTCCATGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087940 59 + 106825570 --AT-GGGGAGAACAGAACGCCCCTTAAGTGGCAGATCC-ACGATCCATTATGAACTCCATTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768012 60 + 158406734 --AT-GGAGAGAACAGAAAGTCCCTTAAGTGGCAGACCTCAGGAACCATTATGAACTCCATGG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 17954 59 + 18451090 --GT-GGAGAGAACAGGAGGTCGCTTAAGTGGCAGATCT-AGGATCCATTACAAACTCCATGG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846648 61 - 32117204 --ATACGCAAGAATAGAAGATCCCCAAAGTGGCAGATCTCAGGATCCATTCCTATCTTCATGA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520557 51 + 51628933 CCATG------------AGCTCCCCAAAATGACAGATCTTAAAATCCATTCTTACCCCCATGA i canFam3.chr25 C 0 I 9 s ailMel1.GL192536.1 1077210 51 - 2169676 CTGTG------------AGCTCTCCAAAATGGCAGATCTTGCAATCCATTATTACCCCTAGGG i ailMel1.GL192536.1 C 0 I 9 s equCab2.chr6 17884613 62 + 84719076 CCATGAGCAAGAACAGAAGCTCCCCAAATTGGCAGATCCCAGGATCCATTATTA-CTCTGTGA i equCab2.chr6 C 0 I 9 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27343 398 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65719 68 + 111236 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=10375.000000 s mm10.chr1_GL456221_random 142156 2 + 206961 GA s rn5.chr9 92386584 2 + 121549591 GT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171749 2 - 10418462 GT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160352 2 + 243199373 GT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538391 2 + 247518478 GT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495088 2 + 131632457 GT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716734 2 + 135000294 GT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679029 2 + 6458163 GT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94087999 2 + 106825570 GT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768072 2 + 158406734 AT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 18013 2 + 18451090 AT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28846709 2 - 32117204 GT i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_4435 65787 2 + 111236 GC i vicPac1.scaffold_4435 I 68 I 3495 s canFam3.chr25 42520617 2 + 51628933 GC i canFam3.chr25 I 9 C 0 s ailMel1.GL192536.1 1077270 2 - 2169676 GC i ailMel1.GL192536.1 I 9 C 0 s equCab2.chr6 17884684 2 + 84719076 GA i equCab2.chr6 I 9 C 0 s pteVam1.scaffold_10686 27741 2 + 49512 GC i pteVam1.scaffold_10686 I 398 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=24015.000000 s mm10.chr1_GL456221_random 142158 7 + 206961 -CTCCCAG s rn5.chr9 92386586 7 + 121549591 -CTCCCAG i rn5.chr9 C 0 I 5 s speTri2.JH393335 4171751 6 - 10418462 -CT-TCAG i speTri2.JH393335 C 0 I 5 s hg19.chr2 231160354 6 + 243199373 -CC-TCTG i hg19.chr2 C 0 I 5 s panTro4.chr2B 235538393 6 + 247518478 -CC-TCTG i panTro4.chr2B C 0 I 5 s gorGor3.chr2B 119495090 6 + 131632457 -CC-TCTG i gorGor3.chr2B C 0 I 5 s ponAbe2.chr2b 122716736 6 + 135000294 -CC-TCTA i ponAbe2.chr2b C 0 I 5 s nomLeu2.GL397366 3679031 6 + 6458163 -CC-TCTG i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94088001 6 + 106825570 -CC-TCTG i rheMac3.chr12 C 0 I 5 s calJac3.chr6 146768074 6 + 158406734 -CC-TCTG i calJac3.chr6 C 0 I 5 s saiBol1.JH378144 18015 6 + 18451090 -CC-TCTG i saiBol1.JH378144 C 0 I 5 s otoGar3.GL873532 28846711 6 - 32117204 -CC-TCGG i otoGar3.GL873532 C 0 I 5 s canFam3.chr25 42520619 7 + 51628933 TTC-TCAG i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1077272 7 - 2169676 CTC-TCAG i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17884686 7 + 84719076 CTC-TCAG i equCab2.chr6 C 0 I 2 s pteVam1.scaffold_10686 27743 7 + 49512 CTC-CCAG i pteVam1.scaffold_10686 C 0 I 702 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=335237.000000 s mm10.chr1_GL456221_random 142165 71 + 206961 CTT---------CATCTGCTCAGAAGTG---TGGACTCTGGAAATTTCTGTGTCACAGTCAGCATCACATGCCAGCTTCTCA------A s rn5.chr9 92386598 56 + 121549591 CTT---------CATCTACTCAGAGGCA---TGGACTCTGGAAATTTCCACGTCACAGTCAGCATCAC--------------------- i rn5.chr9 I 5 C 0 s speTri2.JH393335 4171762 82 - 10418462 CTTGGAGTGTCCCTTGCTTTCAGAGCCA-CTTGGCTCCTGAAAACTTCAGTGTCACCATGAGCACCAGGTGAGAACTTTCCA------G i speTri2.JH393335 I 5 C 0 s hg19.chr2 231160365 82 + 243199373 CTCAGAGCTTCTCTTACTTGCAGAGCCA-TTTGGCTTTAGGAAATTTCAGTGTCACTATGAGTGCCACATGATAGCATCTCT------G i hg19.chr2 I 5 C 0 s panTro4.chr2B 235538404 82 + 247518478 CTCACAGCTTCTCTTACTTGCAGAGCTA-TTTGGCTTTAGGAAATTTCAGTGTCACTATGAGTGCCACATGATAGCATCTCT------G i panTro4.chr2B I 5 C 0 s gorGor3.chr2B 119495101 82 + 131632457 CTCAGAGCTTCTCTTACTTGCAGAGCCA-TTTGGCTTTAGGAAATTTCAGTGTCACTATGAGTGCCACATGATAGCATCTCT------G i gorGor3.chr2B I 5 C 0 s ponAbe2.chr2b 122716747 88 + 135000294 CTCAGAGCTTCTCTTGCTTGCAGAGCCA-CTTGGCTTCTGGAAACTTCAGTGTCACTATCAGTGCCACATGATAATATCTCTGCTCAGG i ponAbe2.chr2b I 5 C 0 s nomLeu2.GL397366 3679042 82 + 6458163 CTCAGAGCTTCTCTTACTTGCAGAGCCA-TTTGGCTTTAGGAAGTTTCAGTGTCACTATGAGTGCCACATAATAGCATCTCT------G i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 94088012 76 + 106825570 CTCAGAGCTT------CTGGCAGGGCCA-TTTGGCTTTGGGAAATTTCAGTGTCACTACCAGTGCCACCTGATGGCATCTTA------G i rheMac3.chr12 I 5 C 0 s calJac3.chr6 146768085 82 + 158406734 CTCAGAGTTTCTCTTGCTTGTAGAGCCA-CTTGGCTTCTGGAAACTTCAGTGTCACTATCAGTGCCACATGATAGTGTCTCT------G i calJac3.chr6 I 5 C 0 s saiBol1.JH378144 18026 82 + 18451090 CTCAGAGCTTCTCTTGCTAGTAGAGCCA-CTTGGCTTCTGGAAACTTCAGTGTCACTATCAGTGCCACATGATAGCATCTAT------G i saiBol1.JH378144 I 5 C 0 s otoGar3.GL873532 28846722 82 - 32117204 TTCTGAA-TTCTCTTGCTTTCAGAGCCACTTTGCCTTCTGGAAACTTTACTGTTCCTATCAGCAGCACATGACAGCTTCTTG------G i otoGar3.GL873532 I 5 C 0 s canFam3.chr25 42520628 75 + 51628933 -------CCTGTTTTGTTGATGGACCCC-CTTGGCTTCTGGAAATTTCAGTATCACTCTTGATACCACATGATAGCTTATTG------G i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1077281 75 - 2169676 -------CCTCTTTTGCTGATGGAGCCC-CTTGGCTTTTGGAAACTTCAGTATCACTCTTAATACCACATGGCAGCTTATTG------G i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17884695 75 + 84719076 -------CCTCTCCTGTTGATGGAGCCC-CTTGATTTCTGGGATCTTCAGTGTCACTCTTGGTACCACGTCACAGCTTCCTG------G i equCab2.chr6 I 2 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=12198.000000 s mm10.chr1_GL456221_random 142236 2 + 206961 GT s hg19.chr2 231160447 2 + 243199373 CT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538486 2 + 247518478 CT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495183 2 + 131632457 CT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122716835 2 + 135000294 CT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679124 2 + 6458163 CT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088088 2 + 106825570 CT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768167 2 + 158406734 CT i calJac3.chr6 C 0 I 6 s saiBol1.JH378144 18108 2 + 18451090 CT i saiBol1.JH378144 C 0 I 6 s otoGar3.GL873532 28846804 2 - 32117204 CT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520703 2 + 51628933 CT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077356 2 - 2169676 CT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17884770 2 + 84719076 CT i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4171844 0 - 10418462 C e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 59943 1364 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I e rn5.chr9 92386654 0 + 121549591 C a score=39594.000000 s mm10.chr1_GL456221_random 142238 6 + 206961 TATGAT s rn5.chr9 92386654 5 + 121549591 -ATGAC i rn5.chr9 C 0 C 0 s hg19.chr2 231160449 6 + 243199373 CATGAC i hg19.chr2 C 0 I 1 s panTro4.chr2B 235538488 6 + 247518478 CATGAC i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119495185 6 + 131632457 CATGAC i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122716837 6 + 135000294 CATGAC i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3679126 6 + 6458163 CATGAC i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94088090 6 + 106825570 CATGAC i rheMac3.chr12 C 0 I 1 s papHam1.scaffold13267 61307 6 + 66950 CATGAC i papHam1.scaffold13267 I 1364 I 1121 s calJac3.chr6 146768175 6 + 158406734 CATGAC i calJac3.chr6 I 6 I 1 s saiBol1.JH378144 18116 6 + 18451090 TATGAC i saiBol1.JH378144 I 6 I 1 s otoGar3.GL873532 28846806 6 - 32117204 CAAAAT i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42520705 6 + 51628933 CCTGAC i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1077358 6 - 2169676 CCTGAC i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17884772 6 + 84719076 CCTGAC i equCab2.chr6 C 0 I 1 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4171844 0 - 10418462 C e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=212971.000000 s mm10.chr1_GL456221_random 142244 58 + 206961 AGGACTGTTTAAACTTGCTGGTGATGACTGGTTTGT-GTCAGAAAGTCTTGGATTCTCA---- s rn5.chr9 92386659 58 + 121549591 AGGACTTTTTAAACTGGCTGGTGATGACTGGTTTGT-GTCAGGAAGTCTTGGATCCCCA---- i rn5.chr9 C 0 C 0 s hg19.chr2 231160456 59 + 243199373 AGGGCCACATAGACCTTTTGGTGGCACCTGAGATATTGTAAAGCAATCTGATATACTCA---- i hg19.chr2 I 1 I 1 s panTro4.chr2B 235538495 59 + 247518478 AGGGCCACATAGACCTTTTGGTGGCACCTGAGATATTGTAAAGCAATCTGATATACTCA---- i panTro4.chr2B I 1 I 1 s gorGor3.chr2B 119495192 59 + 131632457 AGGGCCACATAGACCTTTTGGTGGCAGCTGAGATATTGTAAAACAATCTGATATACTCA---- i gorGor3.chr2B I 1 I 1 s ponAbe2.chr2b 122716844 59 + 135000294 AGTGCCACATAAACCTTTTGGTGGTAGCTGCGGTGTTGTAAAACAATCTGATACACTCA---- i ponAbe2.chr2b I 1 I 660 s nomLeu2.GL397366 3679133 59 + 6458163 AGGGCCACATAGACCTTTTGGTGGCAGCTGAGATATTGTAAAACAATCTGATATACTCA---- i nomLeu2.GL397366 I 1 I 1 s rheMac3.chr12 94088097 58 + 106825570 AGGGCCACATAAACCTTTTGGT-CCAGCTGAGGTATTGTAAAACCATCTGATACACTCA---- i rheMac3.chr12 I 1 I 1 s calJac3.chr6 146768182 59 + 158406734 AGGGCCACATAAACCTTTTTGTGGCAGCTGAGGTGTTGGAAAGCAATCAGATATACTCA---- i calJac3.chr6 I 1 I 1 s saiBol1.JH378144 18123 59 + 18451090 AGGGCCACATAAACCTTTTGTTGGCAGCTGAGGTGTTGTAAAACAATCTGATATACTCA---- i saiBol1.JH378144 I 1 I 703 s otoGar3.GL873532 28846813 59 - 32117204 GGGGCCACTTAAGCCCTCTGGTGATAGCTGAGATGTCATAAAACAATCAGATATACTCA---- i otoGar3.GL873532 I 1 I 1 s canFam3.chr25 42520712 41 + 51628933 AGGGCC-----------------ACAGTTGTTGTGTTGTAAAATA-----ATATATTCCTCCT i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1077365 58 - 2169676 AGGGCCACTAATATCTTTTGGTGACAGTTGCTATGTTATAAAATA-----ATATATTCCTCCA i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17884779 62 + 84719076 AGGGCCACTAAAAG-TTTTGGTGACAGCTGCTGTGTTGTAAAATAATCTGATATACTCCTCCA i equCab2.chr6 I 1 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4171844 0 - 10418462 C e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=-16338.000000 s mm10.chr1_GL456221_random 142302 10 + 206961 TTACAACCA------------T s rn5.chr9 92386717 10 + 121549591 TCATAACCG------------T i rn5.chr9 C 0 C 0 s hg19.chr2 231160516 10 + 243199373 CCAGAATAA------------T i hg19.chr2 I 1 C 0 s panTro4.chr2B 235538555 10 + 247518478 CCAGAATAA------------T i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119495252 10 + 131632457 CCAGAATAA------------T i gorGor3.chr2B I 1 C 0 s nomLeu2.GL397366 3679193 10 + 6458163 CCAGAATAA------------T i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94088156 10 + 106825570 CCAGAATAA------------T i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146768242 10 + 158406734 CCAGAATAA------------T i calJac3.chr6 I 1 C 0 s otoGar3.GL873532 28846873 14 - 32117204 TCAGAACAATCA--------TT i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42520753 3 + 51628933 -----------T--------TA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077423 3 - 2169676 -----------G--------TA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17884841 11 + 84719076 -----------GAGCAATCATT i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e ponAbe2.chr2b 122716903 660 + 135000294 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4171844 0 - 10418462 C e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 18190 1346 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=3465.000000 s mm10.chr1_GL456221_random 142312 1 + 206961 C s rn5.chr9 92386727 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231160526 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538565 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495262 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3679203 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088166 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768252 1 + 158406734 T i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28846887 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520756 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077426 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17884852 1 + 84719076 T i equCab2.chr6 C 0 C 0 s choHof1.scaffold_14362 19536 1 + 23990 T i choHof1.scaffold_14362 I 1346 I 40 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e ponAbe2.chr2b 122716903 660 + 135000294 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4171844 0 - 10418462 C e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=97634.000000 s mm10.chr1_GL456221_random 142313 44 + 206961 --------------ACGTCT---GCATTGAGATACCCAGAG-TCTCTTTTCCCAAGCAAAGC---- s rn5.chr9 92386728 58 + 121549591 ATTTCTGAGTGATGACATCT---GCATTGAGACATCCAGAG-TCTCTTTTCCTAAGCGAAGC---- i rn5.chr9 C 0 C 0 s hg19.chr2 231160527 54 + 243199373 ---GTTGTATGCTAATGTTT---GCTTAAGAGCCTCCAGTG------ATTTCTAAGTGAATCAACA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538566 54 + 247518478 ---GTTGTATGATAATGTTT---GCTTAAGAGCCTCCAGTG------ATTTCTAAGTGAATCAACA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495263 54 + 131632457 ---GTTGTATGCTAATGTTT---GCTTAAGAGCCTCCAGTG------ATTTCTAAGTGAATCAACA i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3679204 54 + 6458163 ---GTTGTATGCTAATGTTT---GCTTAAGAGCCTCCAGTG------ATTTCTAAGGGAATCAATA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088167 54 + 106825570 ---ATTGTATGCTAATGTTT---GCTTGAGGGCCTCCAGTA------ATTTCTAAGTGAAAAAATA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768253 54 + 158406734 ---GTTGTATGAAAATGTTT---GTTTAAGAGACTCCAGTA------ATTTCTCAGTCAGATAATA i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28846888 54 - 32117204 ---ATTGTATGCTAATATTT---GCTTAAGCAACTCCAGTG------ATCTCTAAGTAAAATAATA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520757 59 + 51628933 ---ATCCTATGCTAATATTT---CTTAAGAGATAGCAAGTAATCTCTTTTCCTAAGCTAAG-AATA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077427 60 - 2169676 ---ATTGTATGCTAATATTT---CTTAAGAGATAGCAAGTAATCCCTTTTCCTAAGCTCAGCAATA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17884853 61 + 84719076 ---ATTGTACGCTAATATTTTTGCTTCAGAGATAGCAAGTAGTCTC--TTCCTAAGCAAAATAATG i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e ponAbe2.chr2b 122716903 660 + 135000294 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4171844 0 - 10418462 C e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19537 40 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=2760.000000 s mm10.chr1_GL456221_random 142357 1 + 206961 C s rn5.chr9 92386786 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231160581 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538620 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495317 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3679258 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088221 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768307 1 + 158406734 T i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28846942 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520816 1 + 51628933 C i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077487 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17884914 1 + 84719076 C i equCab2.chr6 C 0 C 0 s choHof1.scaffold_14362 19577 1 + 23990 T i choHof1.scaffold_14362 I 40 I 121 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e ponAbe2.chr2b 122716903 660 + 135000294 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4171844 0 - 10418462 C e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=24787.000000 s mm10.chr1_GL456221_random 142358 12 + 206961 TTATTTTCTCCT s rn5.chr9 92386787 12 + 121549591 TTATTTACTCGT i rn5.chr9 C 0 C 0 s hg19.chr2 231160582 12 + 243199373 TCATTTATTCAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538621 12 + 247518478 TCATTTATTCAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495318 12 + 131632457 TCATTTATTCAC i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3679259 12 + 6458163 TCAGTTATTCAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088222 12 + 106825570 TCATTTATTCAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768308 12 + 158406734 TCATTTATTCAC i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28846943 12 - 32117204 TCCTTTATTCAC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520817 8 + 51628933 TCATTTTt---- i canFam3.chr25 C 0 I 4 s ailMel1.GL192536.1 1077488 8 - 2169676 TCATTCat---- i ailMel1.GL192536.1 C 0 I 4 s equCab2.chr6 17884915 8 + 84719076 TGAGTTAT---- i equCab2.chr6 C 0 I 190 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e ponAbe2.chr2b 122716903 660 + 135000294 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4171844 0 - 10418462 C e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19578 121 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=3036.000000 s mm10.chr1_GL456221_random 142370 1 + 206961 C s rn5.chr9 92386799 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231160594 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538633 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495330 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3679271 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088234 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768320 1 + 158406734 C i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28846955 1 - 32117204 C i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520829 1 + 51628933 t i canFam3.chr25 I 4 C 0 s ailMel1.GL192536.1 1077500 1 - 2169676 t i ailMel1.GL192536.1 I 4 C 0 s equCab2.chr6 17885113 1 + 84719076 T i equCab2.chr6 I 190 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e ponAbe2.chr2b 122716903 660 + 135000294 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4171844 0 - 10418462 C e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19578 121 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=188926.000000 s mm10.chr1_GL456221_random 142371 59 + 206961 TGTGTGAT--------------------------GCTTAATTACAAAGTATACAC--AGAATGCCCAATGACTGGAAGAGAAGATTG s rn5.chr9 92386800 61 + 121549591 TGTGTGAT--------------------------GCTTCATTCTAAAGAACACACAGAGAATGCCCAAGGACTGGAAGAGAAGATCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171844 59 - 10418462 TACGTGAC--------------------------ACATGATT--AATGAACACATCCTAAGTGTCCAGTGGTCACTAGAGAAGATTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160595 56 + 243199373 CACTCAAC--------------------------ATATAATTATCAAGCACACAC--TAAATG-CCAATGGACATTACAGAAGAT-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235538634 58 + 247518478 CACTCAAC--------------------------ATATAATTATCAAGCACACAC--TAAATG-CCAATGGCCATTACAGAAGATTG i panTro4.chr2B C 0 I 316 s gorGor3.chr2B 119495331 58 + 131632457 CGCTCAAC--------------------------ATATAATTATCAAGCACACAC--TAAATG-CCAATGGCCATTACAGAAGATTG i gorGor3.chr2B C 0 I 320 s nomLeu2.GL397366 3679272 58 + 6458163 CACTCAAC--------------------------ATACAATTATCAAGCACATAC--TAAATG-CCAATGGCCATTACAGAAGATTG i nomLeu2.GL397366 C 0 I 67 s rheMac3.chr12 94088235 58 + 106825570 CATTCAAC--------------------------ATATGATTATCAAGTACCTAT--GAAATG-CCAATGACCATTACAGAAGATTG i rheMac3.chr12 C 0 I 66 s calJac3.chr6 146768321 58 + 158406734 CATTCAAC--------------------------ATATAATTATCAAGCACATAC--TAAATG-CCAATAACCATCACAGAAGATTG i calJac3.chr6 C 0 I 67 s otoGar3.GL873532 28846956 57 - 32117204 CATTCAAC--------------------------TTATAATTATTAAGCATATAC--TAAATGTCCAGTGGCCATTACAAAAGAT-- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520830 59 + 51628933 cattcaac--------------------------atataattttcaagcccacat--taaatgcccagtggccattaaagattattg i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077501 59 - 2169676 cattcaac--------------------------atatgattatcaagcccatac--taaatgtccagtggtcattaaagttgattg i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885114 85 + 84719076 CATTGACCAAAACGTTGTTATGCGGTGCATGACTATATAATTATTGAGCACATAC--TAAATGCCCAGAGGCCATTAAAGAAGATTG i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e ponAbe2.chr2b 122716903 660 + 135000294 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19578 121 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=1159.000000 s mm10.chr1_GL456221_random 142430 23 + 206961 TAACAGTAGCC----CTGACTGACCCC s rn5.chr9 92386861 27 + 121549591 TAACAAGAGCCCTCTCTGACTGACCCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171903 19 - 10418462 AAACTGTATTC--------CTGACCTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160651 7 + 243199373 --------------------TGACCTC i hg19.chr2 C 0 C 0 s nomLeu2.GL397366 3679397 23 + 6458163 agatgggagga----tcatttgagccc i nomLeu2.GL397366 I 67 C 0 s rheMac3.chr12 94088359 23 + 106825570 agatgggaata----tcatttaagccc i rheMac3.chr12 I 66 C 0 s calJac3.chr6 146768446 23 + 158406734 agatgggagga----tgacttgagccc i calJac3.chr6 I 67 C 0 s otoGar3.GL873532 28847013 7 - 32117204 --------------------TGACCTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520889 19 + 51628933 aaacaatattc--------ctgacctc i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077560 19 - 2169676 aaacaatattc--------ctgacctc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885199 19 + 84719076 AAACAATATCC--------CAGACCTC i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e ponAbe2.chr2b 122716903 660 + 135000294 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e gorGor3.chr2B 119495389 320 + 131632457 I e panTro4.chr2B 235538692 316 + 247518478 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19578 121 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=18320.000000 s mm10.chr1_GL456221_random 142453 8 + 206961 AAGTATTT s rn5.chr9 92386888 8 + 121549591 GAGTGTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171922 8 - 10418462 AAGGACTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160658 8 + 243199373 AAAAATTA i hg19.chr2 C 0 I 1 s ponAbe2.chr2b 122717563 8 + 135000294 aaaGATTG i ponAbe2.chr2b I 660 I 1 s nomLeu2.GL397366 3679420 8 + 6458163 aggaattt i nomLeu2.GL397366 C 0 I 216 s rheMac3.chr12 94088382 8 + 106825570 aggaattt i rheMac3.chr12 C 0 I 226 s calJac3.chr6 146768469 8 + 158406734 aggaattt i calJac3.chr6 C 0 I 148 s otoGar3.GL873532 28847020 8 - 32117204 CAAGGTTG i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42520908 8 + 51628933 agagaTTG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077579 8 - 2169676 aaggaTTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885218 8 + 84719076 AAGAATTG i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e gorGor3.chr2B 119495389 320 + 131632457 I e panTro4.chr2B 235538692 316 + 247518478 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19578 121 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=-5706.000000 s mm10.chr1_GL456221_random 142461 2 + 206961 -TG s rn5.chr9 92386896 2 + 121549591 -TG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171930 2 - 10418462 -TG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160667 1 + 243199373 -T- i hg19.chr2 I 1 C 0 s ponAbe2.chr2b 122717572 1 + 135000294 -T- i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3679644 1 + 6458163 -T- i nomLeu2.GL397366 I 216 C 0 s rheMac3.chr12 94088616 1 + 106825570 -T- i rheMac3.chr12 I 226 C 0 s otoGar3.GL873532 28847029 1 - 32117204 -T- i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42520916 2 + 51628933 TT- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077587 2 - 2169676 TT- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885226 2 + 84719076 CT- i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e gorGor3.chr2B 119495389 320 + 131632457 I e panTro4.chr2B 235538692 316 + 247518478 I e calJac3.chr6 146768477 148 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19578 121 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=11396.000000 s mm10.chr1_GL456221_random 142463 2 + 206961 TC s rn5.chr9 92386898 2 + 121549591 TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171932 2 - 10418462 TC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160668 2 + 243199373 TC i hg19.chr2 C 0 I 304 s panTro4.chr2B 235539008 2 + 247518478 TT i panTro4.chr2B I 316 C 0 s gorGor3.chr2B 119495709 2 + 131632457 TT i gorGor3.chr2B I 320 C 0 s ponAbe2.chr2b 122717573 2 + 135000294 TC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679645 2 + 6458163 TT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088617 2 + 106825570 TT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768625 2 + 158406734 tc i calJac3.chr6 I 148 C 0 s otoGar3.GL873532 28847030 2 - 32117204 TT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520918 2 + 51628933 TC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077589 2 - 2169676 TC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885228 2 + 84719076 TC i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19578 121 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=38084.000000 s mm10.chr1_GL456221_random 142465 13 + 206961 AAAGTTGCTATCT s rn5.chr9 92386900 13 + 121549591 AAAGTTGCTGTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171934 12 - 10418462 -AATTCATTGTGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160974 13 + 243199373 AAATTTATTGTCA i hg19.chr2 I 304 C 0 s panTro4.chr2B 235539010 13 + 247518478 AAATTTATTGTCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495711 13 + 131632457 AAATTTATTGTCA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717575 13 + 135000294 AATTTTATTGTAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679647 13 + 6458163 AAATTTATTGTCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088619 13 + 106825570 AAATTTATTGTCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768627 13 + 158406734 aaagctgtagtga i calJac3.chr6 C 0 I 95 s otoGar3.GL873532 28847032 13 - 32117204 AATTTTATTGTAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520920 13 + 51628933 AACCTCAAATTCT i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1077591 13 - 2169676 AACCTCAAATTCT i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17885230 13 + 84719076 AACTTCATTGTCT i equCab2.chr6 C 0 I 1 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 18182 703 + 18451090 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19578 121 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=10920.000000 s mm10.chr1_GL456221_random 142478 1 + 206961 A s rn5.chr9 92386913 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171946 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160987 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539023 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495724 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717588 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679660 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088632 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768735 1 + 158406734 A i calJac3.chr6 I 95 C 0 s saiBol1.JH378144 18885 1 + 18451090 A i saiBol1.JH378144 I 703 C 0 s otoGar3.GL873532 28847045 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520934 1 + 51628933 A i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1077605 1 - 2169676 A i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17885244 1 + 84719076 A i equCab2.chr6 I 1 C 0 s choHof1.scaffold_14362 19699 1 + 23990 A i choHof1.scaffold_14362 I 121 I 104 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=157066.000000 s mm10.chr1_GL456221_random 142479 45 + 206961 CATTAAACAATGAC-CAATAGGGTGAAGTAGGGAATTCTAGCACAG--------- s rn5.chr9 92386914 45 + 121549591 CGTTAAATAATGAT-CAATAGGGTGAAGTGGGGGATTCTAGACCAG--------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171947 28 - 10418462 AATGGAATAATAAT-AAGCTGGTCAAAG-----------------G--------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231160988 45 + 243199373 CATGGATGAATTAC-AAATGGGGTGGGGTGGGAGATTCTAGACCAG--------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539024 45 + 247518478 CATGGATGAATTAC-AAATGGGGTGGGGTGGGAGATTCTAGACCAG--------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495725 45 + 131632457 CATGGATGAATTAC-AAATGGGGTGGGGTGGGAGATTCTAGACCAG--------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717589 44 + 135000294 CATGGATGAATTAC-AAAT-GGGTGGAGTAGGAGATTCTAGGCTAG--------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679661 45 + 6458163 CATGGATGAATTAC-AAATGGGGTGGGGTGGGAGATTCTAGACCAG--------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088633 44 + 106825570 CATGGATGAATTAC-AACT-GGGTTGGGTTGGAGATTCTAGGCCAG--------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768736 45 + 158406734 CATGGATGAATTAC-AAATGGGGTGGGATGGGAGATTCTAGGCTAG--------- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 18886 45 + 18451090 CATAGATGAATTAC-AAATTGGCGTGGGTGGGAGATTCTAGGCTAA--------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847046 45 - 32117204 TATGGAGGAATAACTTAATGGGCTGGGGTA-TAGATTCTAGGCTAG--------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520935 54 + 51628933 CATGGAAGTTTAAC-TAACGGGTAAGGGTGGGGGATTTTAGGTCACCCCGAGAGA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077606 39 - 2169676 CAT----------------GGGGAGGGGTGGGGGATTTTAGGTCACCCAGAGAGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885245 54 + 84719076 CATGGAAGAAGAAC-TAATGGGGAGGGGCGGGAGATTCTAGGCCACACAGAGAAG i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19700 104 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=2801.000000 s mm10.chr1_GL456221_random 142524 3 + 206961 TAG s rn5.chr9 92386959 3 + 121549591 TGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171975 3 - 10418462 TGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161033 3 + 243199373 TTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539069 3 + 247518478 TTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495770 3 + 131632457 TTG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717633 3 + 135000294 TCA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679706 3 + 6458163 TTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088677 3 + 106825570 TCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768781 3 + 158406734 TCA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 18931 3 + 18451090 TCA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847091 3 - 32117204 TCA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520989 3 + 51628933 TAG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077645 3 - 2169676 TGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885299 3 + 84719076 TGG i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26320060 1 + 30916457 T-- i myoLuc2.GL429770 N 0 I 53 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19700 104 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=240762.000000 s mm10.chr1_GL456221_random 142527 43 + 206961 G---------CAGTAG-CAGGACCACCTCTCAGGTGAGTATATCTTACGTCAT s rn5.chr9 92386962 43 + 121549591 G---------TAGTGA-CAGGACCACCCCTCAGGTGAGTATATCCTAGATCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4171978 43 - 10418462 G---------CAGTGA-CATGGCCACCTCTGAGGGTATTGTCCCTTAGGTCCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161036 52 + 243199373 GAGAGGCATTCAGTGA-CAAGGTCATCTCTCAGGTGCTTGTCCTTTGAATCAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539072 52 + 247518478 GAGAGGCATTCAGTGA-CAAGGTCATCTCTCAGGTGCTTGTCCTTTGAATCAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495773 52 + 131632457 GAGAGGCATTCAGTGA-CAAGGTCATCTCTCAGGTGCTTGTCTTTTGAATCAC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717636 52 + 135000294 GAGATGCAGTCAGTGA-CAAGGTCACCTCTCAGGTGCTTGTGCTTTAGATCAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679709 52 + 6458163 GAGAGGCATTCAGTGA-CAAGGTCACCTCTCAGGTGCTTGTCCTTTGAATCAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088680 52 + 106825570 GAGAGGCATTCAGTGA-CAAGGTCACCTCTCAAGTGCTTGTCCTTTGAATCAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768784 52 + 158406734 GAGAGGTAGTCAGGGA-CAAGGTCACCTCTTAGGTGCTTGTTCTTTGGATCAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 18934 51 + 18451090 GAGAGGCAGTGAGTGA-CAAGGTCACCTCTCAGATGCTTG-TCTTTGGATCAC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847094 53 - 32117204 GAGAGGCCGGTAGTAACCAAGGTCACCTCTGAGGTGATCGTCACTTGGATCAC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42520992 43 + 51628933 ---------GCAATGA-GATGATCACTTCTCAGGTCATTATCTCATGGATCAC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077648 43 - 2169676 ---------GCAATGG-CATGGCCACTTCTCAGGTCATTGTCCCGTGGATCAC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885302 43 + 84719076 ---------GCAGTGA-CATGGCCACCTCTCAGGTCATTGTCCAGTGGATCAC i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320061 53 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e choHof1.scaffold_14362 19700 104 + 23990 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=27485.000000 s mm10.chr1_GL456221_random 142570 3 + 206961 GCT s rn5.chr9 92387005 3 + 121549591 GCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172021 3 - 10418462 ACT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161088 3 + 243199373 ACT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539124 3 + 247518478 ACT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495825 3 + 131632457 ACT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717688 3 + 135000294 ACT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679761 3 + 6458163 ACT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088732 3 + 106825570 ACT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768836 3 + 158406734 ACT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 18985 3 + 18451090 ACT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847147 3 - 32117204 ACT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521035 3 + 51628933 ACT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077691 3 - 2169676 ACT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885345 3 + 84719076 TCT i equCab2.chr6 C 0 C 0 s choHof1.scaffold_14362 19804 3 + 23990 ACT i choHof1.scaffold_14362 I 104 N 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320061 53 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=35995.000000 s mm10.chr1_GL456221_random 142573 7 + 206961 TGTCTCT s rn5.chr9 92387008 7 + 121549591 TGTCTCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172024 7 - 10418462 CGTCTAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161091 7 + 243199373 TGTTTAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539127 7 + 247518478 TGTTTAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495828 7 + 131632457 TGTTTAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717691 7 + 135000294 TGTTTAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679764 7 + 6458163 TGTTTAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088735 7 + 106825570 TGTTTAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768839 7 + 158406734 TGTTTAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 18988 7 + 18451090 TGTTTAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847150 6 - 32117204 TATTT-T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521038 7 + 51628933 TGTCTAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077694 7 - 2169676 TGTCTGT i ailMel1.GL192536.1 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320061 53 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e equCab2.chr6 17885348 0 + 84719076 C e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=5757.000000 s mm10.chr1_GL456221_random 142580 1 + 206961 A s rn5.chr9 92387015 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172031 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161098 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539134 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495835 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717698 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679771 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088742 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768846 1 + 158406734 G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 18995 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847156 1 - 32117204 G i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521045 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077701 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s myoLuc2.GL429770 26320114 1 + 30916457 G i myoLuc2.GL429770 I 53 I 185 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e equCab2.chr6 17885348 0 + 84719076 C e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=10206.000000 s mm10.chr1_GL456221_random 142581 7 + 206961 G-CTCTCA s rn5.chr9 92387016 7 + 121549591 G-CTCTCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172032 8 - 10418462 GTCTCTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161099 8 + 243199373 GCCTCTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539135 8 + 247518478 GCCTCTGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495836 8 + 131632457 GCCTCTGT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717699 8 + 135000294 GCTTCTGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679772 8 + 6458163 GCCTCTGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088743 8 + 106825570 GCCTCTGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768847 8 + 158406734 GCCTCTGT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 18996 8 + 18451090 GCCTCTGT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847157 8 - 32117204 GCCTTTCA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521046 7 + 51628933 ACTACTC- i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1077702 7 - 2169676 ACTACTG- i ailMel1.GL192536.1 C 0 I 1 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320115 185 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e equCab2.chr6 17885348 0 + 84719076 C e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444053 535 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=2810.000000 s mm10.chr1_GL456221_random 142588 1 + 206961 G s rn5.chr9 92387023 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172040 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161107 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539143 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119495844 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717707 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679780 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088751 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146768855 1 + 158406734 G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19004 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847165 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212444588 1 + 221441202 A i felCat5.chrC1 I 535 I 211 s canFam3.chr25 42521054 1 + 51628933 G i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1077710 1 - 2169676 G i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17885348 1 + 84719076 G i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320115 185 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=724366.000000 s mm10.chr1_GL456221_random 142589 158 + 206961 CTCAGGACTAGAGTTAAGTAAGAGCTGTGACTCCCTGTATCACAGAAGGGAAGGATGAAAAGTCACTACAG-CAGATGAGCT-AAGCAATGTGAAT---------TCTACT--GTTGCCTCTTAACATTGCAGCCAGCATGGCATCCC----TTTGAGTTTTGA--ATACAG-----AGGAG s rn5.chr9 92387024 155 + 121549591 CCCAGGGCTGGAGT----TAAGAGCTGTGACTCCCTGTATCACAGAAGGGAAGAATGAAAAGACACCACAG-TGGATGTGCCAAAGCAATGTGAAT---------TCTACT--GTTGCTTCTTAGCATTGTGGCCAGCATGGCATCTT----TTTGAGATTTGA--ATAGAG-----AGGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172041 161 - 10418462 TCCTGGGATAGAGG----TAAGAGTTGAGTTTGCACATATCTCCGAAGTGAAGAATGCTAGCTCGTTGTAC-TGGATGTTTAAAGGCAATGTAAAC------AAATCTAGA--ATTTTCTCTGAAAAGT-CAGCCAGC-TGACATCTT----CTTGGGATTTGG--ATAGAGGAGCAAGGAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161108 158 + 243199373 CCCTGGGCTACAGA----CAAAAGCTGAGGCTGCTTGTATCCCAGAAGGGAAGGATGCCAAGTCA-TGCCA-TGGATATCCAAAAGCAATCTAAAT------AAATGTAGTGGGTTACCTCTTAAAAGT-CAGTCAACCTGGCATCTT----CTTGTGATTTGG--ATAGAA-----GGGAG i hg19.chr2 C 0 I 1 s panTro4.chr2B 235539144 158 + 247518478 CCCTGGGCTACAGA----CAAAAGCTAAGGCTGCCTGTATCCCAGAAGGGAAGGATGCCAAGTCA-TGTCA-TGGATATCCAAAAGCAATCTAAAT------AAATGTAGTGGGTTACCTCTTAAAAGT-CAGTCAACCTGGCATCTT----CTTGTGATTTGG--ATAGAA-----GGGAG i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119495845 158 + 131632457 CCCTGGGCTACAGA----CAAAAGCTGAGGCTGCCTGTATCCCAGAAGGGAAGGATGCCAAGTCA-TGCCA-TGGGTATCCAAAAGCAATCTAAAT------AAATGTAGTGGGTTACCTCTTAAAAGT-CAGTCAACCTGGCATCTT----CTTGTGATTTGG--ATAGAA-----GGGAG i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122717708 158 + 135000294 CCCTGGGCTAGAGA----CAAAAGCTGAGGCTGCCTGTATCCTAGAAGGGAAAGCTGCCAACTCC-TGCAA-TGGATATCCAAAAGCAATCTAAAT------AAATCTAGTGGGTTACCTCTTAAAAGA-CAGTCAACCTGACATCTT----CTTGTGATTTGG--ATAGAA-----GGGAG i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3679781 158 + 6458163 CCCTGGGCTATAGA----CAAAAGCTGAGGCTGCCTGTATCCCAGAAGGGAAGGATGCCAAGTCA-TGCCA-TGGATATCCAAAAGCAATCTAGAT------AAATGTAGTGGGTTACTTCTTAAAAGT-CAGTCAACTTGGCATCTT----CTTGTGATTTGG--ATAGAA-----GGGAG i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94088752 158 + 106825570 CCCTGGGCTACAGA----TAGAAGCTAAAGCTGCCTGTATCCCAGAAGGGAAGGATGCCAAGTCA-TGCAA-TGGATATCCAAAAGCCATCTAAAT------AAATATAGTGGGTTACCTCTGAAAAGT-CAGTGAACCTGACATCTT----TTTGTGATTTGG--ATAGAA-----GGGAG i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146768856 158 + 158406734 CCCTGGGCTAGAGA----CAAAAGCTGAGCCTGTCTGTATCCCAGAAAGGAAGGATGCCAAGTCA-TGCAG-TGGATACTCAAAAGCAGTCTAAAT------AAATCTAGTGGGTTACCTCTGAAAATT-CAGTCAAGCTGACATCTT----TTTGTGATTTGT--ATAGAA-----GGGAG i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 19005 155 + 18451090 CCATGGGCTAGAGA----CAAAAGTTGTGGCTGCCTGTGTCCCAGAAGGAAAGGATGCCAAATCA-TGCAA-TGGATACCCAAAAGCAATCTAAAT------AAATCTAGTAGGTTACCTCTTAAAAGT-CAATCAATCTGACACC-------TTGTGATTTGA--ATAGGA-----GAGAG i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28847166 159 - 32117204 CCCTGTGCTAGACA----TAAAAGCCAAGGTTTCCTGCATCCCAGAAGGGAAGGATGCCAAGGCA-GGCTATTGGATATCTAAAAGTAAAATCAAT------AAATGTAGTAGGTCACCTCTGAAAAGT-CAGCTGGTCTGACATTTT----CTTGGGATTTGG--ATAGAG-----AAGAG i otoGar3.GL873532 C 0 I 31 s canFam3.chr25 42521055 150 + 51628933 CCCTGGGCAGGAGA----TAAAAGCTAC----------ATTACAAA-GGGAAGGGGGCCAGGTCA-TTCTACTGAATATGCAAAAGCATTGTAAGTTTAGTGAGTGATAATCAATTACCTCTGAAAAGT-CACCTAGC-TAATATCTT----TTTGGG---AGG--AGAGAG-----GAGGG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077711 147 - 2169676 CCCTGGGCTGGAGA----TAAAAGCTGC----------ATTACAGA-GGGAAGGAGGCCAGGTCG-TTCTACTGAATATGGAAAAGCATTGTAAGTTTAGTGAGTGATAATCAATTACCTCTGAAAAGT-CACCCAGC-TGACATCTT----TTTG------GG--AGAGAG-----GAGGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885349 166 + 84719076 TCCTTGGCTGGAGA----TAAGAGCTGAGGTTGCCTG-ATCCCAGAGGGGAAGGAGGCCAAGTCA-TTCTACTGAATATGAGAAAGCAATGTAAGTCCAGTGGGTGGTAGTCAGTTACCTCTGAAAAGT-CAGCCAGC-TGGCATCTTGGGATTTGGA---TGGCAGGAGAG-----AAGGG i equCab2.chr6 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320115 185 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444589 211 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 128950 1802 + 176633 I a score=-6070.000000 s mm10.chr1_GL456221_random 142747 2 + 206961 -GG s rn5.chr9 92387179 2 + 121549591 -GG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172202 2 - 10418462 -GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161267 2 + 243199373 -GG i hg19.chr2 I 1 I 29 s panTro4.chr2B 235539303 2 + 247518478 -GG i panTro4.chr2B I 1 I 29 s gorGor3.chr2B 119496004 2 + 131632457 -GG i gorGor3.chr2B I 1 I 29 s ponAbe2.chr2b 122717867 2 + 135000294 -GC i ponAbe2.chr2b I 1 I 29 s nomLeu2.GL397366 3679940 2 + 6458163 -GG i nomLeu2.GL397366 I 1 I 29 s rheMac3.chr12 94088911 2 + 106825570 -GC i rheMac3.chr12 I 1 I 29 s calJac3.chr6 146769015 2 + 158406734 -GG i calJac3.chr6 I 1 I 29 s saiBol1.JH378144 19161 2 + 18451090 -AG i saiBol1.JH378144 I 1 I 27 s micMur1.scaffold_3075 130752 2 + 176633 -GG i micMur1.scaffold_3075 I 1802 I 360 s otoGar3.GL873532 28847356 2 - 32117204 -GA i otoGar3.GL873532 I 31 I 1 s canFam3.chr25 42521205 2 + 51628933 TG- i canFam3.chr25 C 0 I 14 s ailMel1.GL192536.1 1077858 2 - 2169676 TG- i ailMel1.GL192536.1 C 0 I 15 s equCab2.chr6 17885515 2 + 84719076 TG- i equCab2.chr6 C 0 I 15 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320115 185 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444589 211 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I a score=1179.000000 s mm10.chr1_GL456221_random 142749 1 + 206961 A s rn5.chr9 92387181 1 + 121549591 A i rn5.chr9 C 0 I 26 s speTri2.JH393335 4172204 1 - 10418462 G i speTri2.JH393335 C 0 I 25 s canFam3.chr25 42521221 1 + 51628933 A i canFam3.chr25 I 14 C 0 s ailMel1.GL192536.1 1077875 1 - 2169676 A i ailMel1.GL192536.1 I 15 C 0 s equCab2.chr6 17885532 1 + 84719076 A i equCab2.chr6 I 15 C 0 s myoLuc2.GL429770 26320300 1 + 30916457 A i myoLuc2.GL429770 I 185 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e saiBol1.JH378144 19163 27 + 18451090 I e ponAbe2.chr2b 122717869 29 + 135000294 I e otoGar3.GL873532 28847358 1 - 32117204 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e rheMac3.chr12 94088913 29 + 106825570 I e nomLeu2.GL397366 3679942 29 + 6458163 I e gorGor3.chr2B 119496006 29 + 131632457 I e panTro4.chr2B 235539305 29 + 247518478 I e hg19.chr2 231161269 29 + 243199373 I e calJac3.chr6 146769017 29 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444589 211 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=14995.000000 s mm10.chr1_GL456221_random 142750 4 + 206961 CCTG s rn5.chr9 92387208 4 + 121549591 CCGG i rn5.chr9 I 26 C 0 s speTri2.JH393335 4172230 4 - 10418462 CCTG i speTri2.JH393335 I 25 C 0 s hg19.chr2 231161298 4 + 243199373 ACAG i hg19.chr2 I 29 C 0 s panTro4.chr2B 235539334 4 + 247518478 ACAG i panTro4.chr2B I 29 C 0 s gorGor3.chr2B 119496035 4 + 131632457 ACAG i gorGor3.chr2B I 29 C 0 s ponAbe2.chr2b 122717898 4 + 135000294 ACAG i ponAbe2.chr2b I 29 C 0 s nomLeu2.GL397366 3679971 4 + 6458163 ACAG i nomLeu2.GL397366 I 29 C 0 s rheMac3.chr12 94088942 4 + 106825570 ACAG i rheMac3.chr12 I 29 C 0 s calJac3.chr6 146769046 4 + 158406734 ACAG i calJac3.chr6 I 29 C 0 s saiBol1.JH378144 19190 4 + 18451090 ACAG i saiBol1.JH378144 I 27 C 0 s otoGar3.GL873532 28847359 3 - 32117204 -CTG i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42521222 4 + 51628933 GCTG i canFam3.chr25 C 0 I 8 s ailMel1.GL192536.1 1077876 4 - 2169676 GCTG i ailMel1.GL192536.1 C 0 I 8 s equCab2.chr6 17885533 4 + 84719076 GCCG i equCab2.chr6 C 0 I 8 s myoLuc2.GL429770 26320301 4 + 30916457 CTTG i myoLuc2.GL429770 C 0 I 46 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444589 211 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=52400.000000 s mm10.chr1_GL456221_random 142754 12 + 206961 GGAGCCTTGGTT s rn5.chr9 92387212 12 + 121549591 GGAGCCTTAGTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172234 12 - 10418462 GGGACTTTTTAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161302 12 + 243199373 AGGACCTTGGAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539338 12 + 247518478 AGGACCTTGGAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496039 12 + 131632457 AGGACCTTGGAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717902 12 + 135000294 AGGACCTTGGAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679975 12 + 6458163 AGGACCTTGGAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088946 12 + 106825570 AGGACCTTGGAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769050 12 + 158406734 AGGAACTTGGAG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19194 12 + 18451090 AGGAACTTGGAG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847362 12 - 32117204 GGGACCCTCAGG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521234 12 + 51628933 GGGACGTTGGGC i canFam3.chr25 I 8 C 0 s ailMel1.GL192536.1 1077888 12 - 2169676 GGGACATTGGGC i ailMel1.GL192536.1 I 8 C 0 s equCab2.chr6 17885545 11 + 84719076 GGGAC-TTGGAT i equCab2.chr6 I 8 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320305 46 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444589 211 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=40356.000000 s mm10.chr1_GL456221_random 142766 14 + 206961 -TTA-TTTGATTTTCA s rn5.chr9 92387224 14 + 121549591 -TCA-TTTGATTTTCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172246 14 - 10418462 -ATA-TTTTATCTTTA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161314 14 + 243199373 -GCA-TTTTATCACCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539350 14 + 247518478 -GCA-TTTTATCACCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496051 14 + 131632457 -GCA-TTTTATCAGCA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717914 14 + 135000294 -GCA-TTTTATCACCA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3679987 15 + 6458163 -GCATTTTTATCACCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088958 14 + 106825570 -GCA-TTTTATCACCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769062 14 + 158406734 -GTG-TTTTATCACCA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19206 14 + 18451090 -GCA-TTTTATCACCA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847374 12 - 32117204 -G---ATGTGTCTCTA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521246 13 + 51628933 -ACA-TTTTATTTT-G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1077900 14 - 2169676 -ACA-TTTTATCTTAG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885556 14 + 84719076 -GCA-TTTTATCTTCC i equCab2.chr6 C 0 C 0 s xenTro3.GL172926 1337229 14 + 1453821 TTAA-TTGACTTACC- i xenTro3.GL172926 N 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320305 46 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444589 211 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=-3340.000000 s mm10.chr1_GL456221_random 142780 1 + 206961 -G s rn5.chr9 92387238 1 + 121549591 -G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172260 1 - 10418462 -G i speTri2.JH393335 C 0 I 12 s hg19.chr2 231161328 1 + 243199373 -G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539364 1 + 247518478 -G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496065 1 + 131632457 -G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122717928 1 + 135000294 -G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680002 1 + 6458163 -G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94088972 1 + 106825570 -G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769076 1 + 158406734 -G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19220 1 + 18451090 -G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847386 1 - 32117204 -A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521259 1 + 51628933 -G i canFam3.chr25 C 0 I 13 s ailMel1.GL192536.1 1077914 1 - 2169676 -A i ailMel1.GL192536.1 C 0 I 13 s equCab2.chr6 17885570 1 + 84719076 -T i equCab2.chr6 C 0 I 12 s myoLuc2.GL429770 26320351 1 + 30916457 -A i myoLuc2.GL429770 I 46 C 0 s xenTro3.GL172926 1337243 1 + 1453821 T- i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e felCat5.chrC1 212444589 211 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=12475.000000 s mm10.chr1_GL456221_random 142781 2 + 206961 GA- s rn5.chr9 92387239 2 + 121549591 GG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172273 2 - 10418462 GG- i speTri2.JH393335 I 12 C 0 s hg19.chr2 231161329 2 + 243199373 GG- i hg19.chr2 C 0 I 13 s panTro4.chr2B 235539365 2 + 247518478 GG- i panTro4.chr2B C 0 I 13 s gorGor3.chr2B 119496066 2 + 131632457 GG- i gorGor3.chr2B C 0 I 13 s ponAbe2.chr2b 122717929 2 + 135000294 GG- i ponAbe2.chr2b C 0 I 13 s nomLeu2.GL397366 3680003 2 + 6458163 GG- i nomLeu2.GL397366 C 0 I 13 s rheMac3.chr12 94088973 2 + 106825570 GG- i rheMac3.chr12 C 0 I 13 s calJac3.chr6 146769077 2 + 158406734 GG- i calJac3.chr6 C 0 I 13 s saiBol1.JH378144 19221 2 + 18451090 GG- i saiBol1.JH378144 C 0 I 13 s otoGar3.GL873532 28847387 2 - 32117204 GG- i otoGar3.GL873532 C 0 I 2 s felCat5.chrC1 212444800 2 + 221441202 GG- i felCat5.chrC1 I 211 I 84 s canFam3.chr25 42521273 2 + 51628933 GA- i canFam3.chr25 I 13 C 0 s ailMel1.GL192536.1 1077928 2 - 2169676 GA- i ailMel1.GL192536.1 I 13 C 0 s equCab2.chr6 17885583 2 + 84719076 GA- i equCab2.chr6 I 12 C 0 s myoLuc2.GL429770 26320352 2 + 30916457 GA- i myoLuc2.GL429770 C 0 C 0 s xenTro3.GL172926 1337244 2 + 1453821 -GT i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 61313 1121 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=-2634.000000 s mm10.chr1_GL456221_random 142783 1 + 206961 -G s rn5.chr9 92387241 1 + 121549591 -G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172275 1 - 10418462 -A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161344 1 + 243199373 -G i hg19.chr2 I 13 C 0 s panTro4.chr2B 235539380 1 + 247518478 -G i panTro4.chr2B I 13 C 0 s gorGor3.chr2B 119496081 1 + 131632457 -G i gorGor3.chr2B I 13 C 0 s ponAbe2.chr2b 122717944 1 + 135000294 -G i ponAbe2.chr2b I 13 C 0 s nomLeu2.GL397366 3680018 1 + 6458163 -G i nomLeu2.GL397366 I 13 C 0 s rheMac3.chr12 94088988 1 + 106825570 -G i rheMac3.chr12 I 13 C 0 s papHam1.scaffold13267 62434 1 + 66950 -G i papHam1.scaffold13267 I 1121 I 402 s calJac3.chr6 146769092 1 + 158406734 -A i calJac3.chr6 I 13 C 0 s saiBol1.JH378144 19236 1 + 18451090 -G i saiBol1.JH378144 I 13 C 0 s equCab2.chr6 17885585 1 + 84719076 -A i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26320354 1 + 30916457 -A i myoLuc2.GL429770 C 0 I 1268 s xenTro3.GL172926 1337246 1 + 1453821 T- i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e otoGar3.GL873532 28847389 2 - 32117204 I e canFam3.chr25 42521275 0 + 51628933 C e ailMel1.GL192536.1 1077930 0 - 2169676 C e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212444802 84 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=256343.000000 s mm10.chr1_GL456221_random 142784 71 + 206961 GAGCTATAG--AGGTGATGGATTTTTC---TCTCTGGG---GTTACTTGGACTCTAGGATTCT-GAGCCTTATGGGTCCT s rn5.chr9 92387242 72 + 121549591 GAGCTACAG-AAAGTGATGGATTTTTC---TTTCTGGG---GTCACTTGGACTCTAGAAATCT-GAGCCTTATGGGTTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172276 68 - 10418462 GAGCTTCAG-AAAGTA--GGAGAGTTC---TCCGTGGG---CTTCCTTGGGTTCCAGGA--CC-TGGCCCTGTGGTTACT i speTri2.JH393335 C 0 I 2 s hg19.chr2 231161345 74 + 243199373 GAGCTGCAG-AAAGCA--GTGCTCTTC--TTGTCTGGGACACTTGCATGGCCTCTAGGACTCT-GAGTCCTGTGGTCCCA i hg19.chr2 C 0 I 2 s panTro4.chr2B 235539381 74 + 247518478 GAGCTGCAG-AAAGCA--GTGTTCTTC--TTGTCTGGGACACTTGCATGGCCTCTAGGACTCT-GAGCCCTGTGGTCCCA i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119496082 74 + 131632457 GAGCTGCAG-AAAGCA--GTGTTCTTC--TTGTCTGGGACACTTGCATGGCCTCTAGGACTCT-GAGCCCTGTGGTCCCA i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122717945 71 + 135000294 GAGCTGCAG-AAAGCA--GTGCTCTTC-----TCTGGGACACTTGCATGGCCTCCAGGACTCT-GGGTCCTGTGGTCCCT i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3680019 77 + 6458163 GAGCTGCAGAAAAGCA--GTGTTTCTTCTTTCTCTGGAACAC-TGCATGGCCTCTGGGACTCTGGGGCCCTGTGGTCCCA i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94088989 73 + 106825570 GAGCTGCAA-AAAGCA--GTGTTCTTC--TTCTCTGGGACAC-TGCATAGCCTCCAGGACTCT-GGGCCCTGTGATCCCA i rheMac3.chr12 C 0 I 2 s calJac3.chr6 146769093 72 + 158406734 GGGCTGGAG-AAAGCA--GTGTTCTTC--TTCT-TGGGACCCTTGCATGGCCTCCAGAACTCT-GAGCCTTA-GGTCCCT i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 19237 73 + 18451090 GGGCTGGAG-AAAGCA--GTGTTCTTC--TTCTCTGGGACACTTGCATGGCCTCCAGGACTCT-GGGCCCTA-GGTCCCT i saiBol1.JH378144 C 0 I 2 s otoGar3.GL873532 28847391 69 - 32117204 -----GAAG-AAAGTA--GTGGAATTC--TTTTCTGGGACACTTTCATGGCCTCCAGGACTCT-GGGCCCTATGATCACT i otoGar3.GL873532 I 2 I 2 s canFam3.chr25 42521275 71 + 51628933 GGACTGCAA-AAGGCA--ATGGAA-----TTCTCTGGGACATTTCCCCCGATTCCAGAACTCT-GGGCTCTGTGATCACT i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1077930 71 - 2169676 AGACTGCAA-AAGGCA--GCGCAG-----TTCTCTGGGACATTTCTATAGATTCCAGGACTCT-GGGTCCTGTGGTCACT i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17885586 73 + 84719076 GAGCGGCAG-AAGGTG--ATGGAGCTC--TTCTGTGGGGCATTTGCAAGGATTCCAGGACTCT-GGGCTCTGTGGTCTC- i equCab2.chr6 C 0 C 0 s xenTro3.GL172926 1337247 50 + 1453821 -GGGTAAGA-AAGGTGATAGATTATTC--TATATTGGCCTGTTTCCTTTTTTTG-------------------------- i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212444802 84 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=-1510.000000 s mm10.chr1_GL456221_random 142855 2 + 206961 TG s rn5.chr9 92387314 2 + 121549591 TG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172346 2 - 10418462 GG i speTri2.JH393335 I 2 C 0 s hg19.chr2 231161421 2 + 243199373 AG i hg19.chr2 I 2 C 0 s panTro4.chr2B 235539457 2 + 247518478 AG i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119496158 2 + 131632457 AG i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122718018 2 + 135000294 AG i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3680098 1 + 6458163 A- i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94089064 2 + 106825570 GG i rheMac3.chr12 I 2 C 0 s calJac3.chr6 146769167 2 + 158406734 AG i calJac3.chr6 I 2 C 0 s saiBol1.JH378144 19312 2 + 18451090 AG i saiBol1.JH378144 I 2 C 0 s otoGar3.GL873532 28847462 2 - 32117204 CA i otoGar3.GL873532 I 2 C 0 s felCat5.chrC1 212444886 1 + 221441202 -G i felCat5.chrC1 I 84 I 31 s canFam3.chr25 42521348 1 + 51628933 -G i canFam3.chr25 I 2 I 1 s ailMel1.GL192536.1 1078002 1 - 2169676 -G i ailMel1.GL192536.1 I 1 I 1 s equCab2.chr6 17885659 2 + 84719076 TG i equCab2.chr6 C 0 I 3 s xenTro3.GL172926 1337297 2 + 1453821 TG i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=125434.000000 s mm10.chr1_GL456221_random 142857 28 + 206961 ACTA---TGATTGGCACATCTTCAGCCTCAT s rn5.chr9 92387316 28 + 121549591 AATA---CGATTGGTTCATCTTCAGCCTCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172348 28 - 10418462 GCTG---TGACTGCTAAGTCCTCAGACTGAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161423 28 + 243199373 GCTG---TGGGAGATAAGTCCTCAGCCTGAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539459 28 + 247518478 GCTG---TGGGAGATAAGTCCTCAGCCTGAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496160 28 + 131632457 GCTG---TGGGAGATAAGTCCTCAGCCTGAC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718020 28 + 135000294 GCTG---TGGGGGATAAATTATCAGCCTGAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680099 26 + 6458163 GCTG---TGAGGGATAAGTC-TCAG-CTGAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089066 28 + 106825570 GCTG---TGGGGGATAAGTCCTCAGCCTGAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769169 28 + 158406734 GCTG---TGGGGGATGAGTCCTCAGCCTGAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19314 28 + 18451090 GCTG---TGGGGGATGAGTCCTCAGCCTGAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847464 19 - 32117204 GTTG------------GGTCCTCAACCTGAC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521350 28 + 51628933 GCTG---TTGGTGATGAGTTCTTAACCTGAT i canFam3.chr25 I 1 I 2 s ailMel1.GL192536.1 1078004 28 - 2169676 GCTG---TTGGTGATGAGTTCTTGACCTGAT i ailMel1.GL192536.1 I 1 I 2 s equCab2.chr6 17885664 28 + 84719076 GCTG---TTGGTGATGAGGCCTCAGCCTGAT i equCab2.chr6 I 3 I 2 s xenTro3.GL172926 1337299 30 + 1453821 ACTAAACTGAAAGGTCAGACTCTAAAGTAT- i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212444887 31 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=2126.000000 s mm10.chr1_GL456221_random 142885 2 + 206961 -TC s rn5.chr9 92387344 2 + 121549591 -TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172376 2 - 10418462 -TC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161451 2 + 243199373 -TA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539487 2 + 247518478 -TA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496188 2 + 131632457 -TA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718048 2 + 135000294 -TA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680125 2 + 6458163 -TA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089094 2 + 106825570 -TA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769197 2 + 158406734 -TG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19342 2 + 18451090 -TA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847483 2 - 32117204 -TC i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212444918 2 + 221441202 -TC i felCat5.chrC1 I 31 I 196 s canFam3.chr25 42521380 2 + 51628933 -TC i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1078034 2 - 2169676 -TC i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17885694 2 + 84719076 -TC i equCab2.chr6 I 2 C 0 s xenTro3.GL172926 1337329 2 + 1453821 TT- i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=332965.000000 s mm10.chr1_GL456221_random 142887 118 + 206961 ---TCATGGCAGCTACTCTGCAGCGAGGGGGGCTGTTGGCCATGGTGGACACATCCTGGGATGGCAAAGAGAAAGAAAATAGCCTAGAG--CCTTGAATGTTCGAGGCTAA----GTAGAATT------ATTC--- s rn5.chr9 92387346 111 + 121549591 ---TCATGGTA-CTACTCTGCAGTAGAGTACATGTGTGGCCA------ACACATCCTGGGTTGGCAAGTTGAAAGAAAATGGCCTAGAG--CCTTGAATGCTCAAGGATAA----GTAGAATT------ATTT--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172378 106 - 10418462 ---TCGCTGCAGCTCCTGTG-------------GGTGGGCTG------GCAGATCCTGGGCAGCCAAGTTGAAGGAAAATGGCTGAGAACCCCTTGAA-GCAACAGGACAG----GTAAAATTTCTCCAATTC--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161453 100 + 243199373 ---TTATTGAGGCTCCTCTG-------------GGTGGGATG------ACAC------AAAGGCCAAGTTTAGGAAATATGCCTGAGGGCCCCTTGAA-GTAAGAGGACAA----GTAGAGCTTCTCTGACTT--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539489 100 + 247518478 ---TTATTGAGGCTCCTCTG-------------GGTGGGATG------ACAC------AAAGGCCAAGTTTAGGAAATATGCCTGAGGGCCCCTTGAA-GTAAGAGGACAA----GCAGAGCTTCTCTGACTT--- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496190 100 + 131632457 ---TTATTGAGGCTTCTCTG-------------GGTGGGATG------ACAC------AAAGGCCAAGTTTAGGAAATATGCCTGAGGGCCCCTTGAA-GTAAGAGGACAA----GTAGAGCTTCTCTGACTT--- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718050 100 + 135000294 ---TTATTGCAACTCCTCTG-------------GGTGGGATG------ACAC------AAAGGCCAAGTTTAGGAAATATGCCTGAGGGCCCCTTGGA-GTAAGAGGACAA----GTAGAGCTTCTCCGACTT--- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680127 99 + 6458163 ----TATTGCGGCTCCTCTG-------------GGTGGGATG------ACAC------AAAGGCCAAGTTTAGGAAATATGCCTGAGGGCCCCTTGGA-GTAAGAGGACAA----GTAGAGCTTCTCTGACTT--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089096 98 + 106825570 ---TTATTGCAGCTCTTCTG-------------GGTGGGATG------TCAC------AAAGGCCAAGTTTAGGAAATATGCCTGAGGGCCCCTTGGA-GTAAGAGGACAA----GT--AGTTTCTGTGAATT--- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769199 100 + 158406734 ---TTTTTGCAGCTCCTCTG-------------GGTGGGATG------ACAC------AAAGGCCAGCTTTAGGAGATATGACTGAGGGCCCCTTGGA-GGAAGAGGACAA----GTAGAGTTTCTCTGACTT--- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19344 100 + 18451090 ---TTATTGCAGCTCCTCTG-------------GGTGGGATG------ACAC------AAAGGTCAAGTTTAGGAGATATGACTGAGGGCCCCTTGGA-GTAAGAGGACAA----GTAGAGTTTCTCTGACTT--- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847485 106 - 32117204 ---TGATTACAGCCCCTCTG-------------AGTGGGATG------ATAAATTCTGAGGAGCCAAGATAAAGAGAAATCCCTGAGGGCTCCTCAGG-GCAAGAGGACAA----GTAGAGTTTCTACAACTT--- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521382 92 + 51628933 ---TCATTGAACCTCCTCCT-------------GATGGGATG------ATAC--------TTTCTAATGTAGAGAAAAATGCCCGAGGAACCTTCAAA-GTAAGAGAACCA----GTGGAGTTTCTC--------- i canFam3.chr25 C 0 I 7 s ailMel1.GL192536.1 1078036 91 - 2169676 ---TCATTGCATCTCCTCCT-------------GGTGGGATG------ATAT--------TTTCTAATGGAGAGAAAAATAGCTGA-GAACCTTCGAA-GTAGGAGAACCA----GTGGAGTTTCTT--------- i ailMel1.GL192536.1 C 0 I 6 s equCab2.chr6 17885696 91 + 84719076 ---TCCTTGCAGCTTCTCTA-------------GGT-GGATG------ACAC--------TTTTTAGTATAGAGAAAGATGCCTGAAGTCCACTGCAA-GTAAGAGAACCA----GAGGAGTTTCTC--------- i equCab2.chr6 C 0 I 7 s xenTro3.GL172926 1337331 108 + 1453821 TAATGATATCATCTCTTTTT-------------TGTATTTTT------GTCC--TTGCAGTCTCTGGGTTTGCAATAACTGACTGA------CTTGAG-GGCCTATAACCATATTGTGAGCTATCCAAAACCCTTT i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212444920 196 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=183433.000000 s mm10.chr1_GL456221_random 143005 91 + 206961 A---TTTAGAAACCAGACCCT------GCTTCCTTGCAT---GGCTTCACAAAGGCTCCTTGGGGACT--AAAGCCAGCAAGGGGACCTTGCTTTAATTCAAACA s rn5.chr9 92387457 91 + 121549591 A---TTTAGAAACCAGGTCCT------GCCTCCTTGCAT---GACTTCACAAAGGCACCTTGGGGACT--AGAACCAGCAAGTAGAATTTGCTTTCATCCAAACA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172484 95 - 10418462 AGTCTGTGGAAACCAGGTCCT------GGGTCCCCTCTT---GGCAACACGAAGGCCCACCGTGAATTGAAGAGCTGGGGAAGGGAGTGTGCATTGG-CCACACA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161553 60 + 243199373 GGCCTGTGCAAACTAGGTCCA------GACTCCCTG---------------------------------------CAGGGAATGGGACTTGCATTGGGATTAACG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539589 60 + 247518478 GGCCTGTGCAAACTAGGTCCA------GACTCCCTG---------------------------------------CAGGGAATGGGACTTGCATTGGGCTTAACG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496290 60 + 131632457 GGCCTGTGCAAACTAGGTCCA------GACTCCCTG---------------------------------------CAGGGAATGGGACTTGCATTGGGCTTAATG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718150 60 + 135000294 GGCCTGTGCAAACTAGGTCCA------GACTCCCTG---------------------------------------CAGGGAATGGGACTTGCATTGGGCTGAACA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680226 60 + 6458163 GGCCTGTGCAAACTAGGTCCA------GACTTCCTG---------------------------------------CAGGGAATGGGACTTGCACTGGGCTTAACG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089194 60 + 106825570 GGCCTGTGCAAACTAGGTCCA------GACTCCCTG---------------------------------------CAGGGAATGGGACTTGCACTGGGCTGAACA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769299 60 + 158406734 GGCCTTTGCAAACTAGGTCCA------GACTCCCTA---------------------------------------CAGGGAATGGGACTTGCGTTGGGCTGAACG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19444 60 + 18451090 GGCCTTTGCAAACTAGGTCCA------GACTCCCTG---------------------------------------CAGGTAATGGGACTTGGGTTGGGCTGAACG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847591 86 - 32117204 GGCTTGTGGAGACCAGGTCTA------GACTCCCTGCAC---AGCTTCACAAAGGCCC-------ACT--TTGGCCAGGAAATGAAACTCACA-TGGGCCAAACA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521481 96 + 51628933 CATCTGTAGAAACCAGAGCCA------GACTCTCTGCAT---GGCTTCACAAAGGCCTACCTTGGGTCAGAAATTCAGGAAATTAAACTTGCATTGGGCCAAACA i canFam3.chr25 I 7 C 0 s ailMel1.GL192536.1 1078133 96 - 2169676 CATCCGTAGAAACCAGGGGCA------GACTCCCTGCAT---GGCTTCATGAAGACCTACTTTGGGTCAGAAATCCAGGAAATTGAACTTGCATTGGGCCAAACA i ailMel1.GL192536.1 I 6 C 0 s equCab2.chr6 17885794 94 + 84719076 -ATCCGCTAAAACCAGGGCCA------GACTCCCTTCAT---GGCTTCACAATGGCCCACCTTGGTTCTGAAAGCCAGG-GATTATAATTACATTGGGCCAAACA i equCab2.chr6 I 7 C 0 s xenTro3.GL172926 1337439 95 + 1453821 -----GCTAAAACTGAATCTAATAAGTGCTGCCTTGGGTACAGTTTTCAATAAGGCTCCATGTTTGCTAAC----TTAAGTGGGGTGTTTGATTTAGGCTAACT- i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 24071 1410 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212444920 196 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 130754 360 + 176633 I a score=14742.000000 s mm10.chr1_GL456221_random 143096 1 + 206961 A s rn5.chr9 92387548 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172579 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161613 1 + 243199373 G i hg19.chr2 C 0 I 3 s panTro4.chr2B 235539649 1 + 247518478 G i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119496350 1 + 131632457 G i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122718210 1 + 135000294 G i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3680286 1 + 6458163 G i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94089254 1 + 106825570 G i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146769359 1 + 158406734 G i calJac3.chr6 C 0 I 3 s saiBol1.JH378144 19504 1 + 18451090 G i saiBol1.JH378144 C 0 I 3 s micMur1.scaffold_3075 131114 1 + 176633 G i micMur1.scaffold_3075 I 360 I 196 s otoGar3.GL873532 28847677 1 - 32117204 G i otoGar3.GL873532 C 0 I 3 s turTru2.JH486691 25481 1 - 63237 G i turTru2.JH486691 I 1410 C 0 s felCat5.chrC1 212445116 1 + 221441202 G i felCat5.chrC1 I 196 I 453 s canFam3.chr25 42521577 1 + 51628933 G i canFam3.chr25 C 0 I 3 s ailMel1.GL192536.1 1078229 1 - 2169676 G i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17885888 1 + 84719076 G i equCab2.chr6 C 0 I 3 s xenTro3.GL172926 1337534 1 + 1453821 G i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I a score=15052.000000 s mm10.chr1_GL456221_random 143097 3 + 206961 TAG s rn5.chr9 92387549 3 + 121549591 TAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172580 2 - 10418462 -AG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161617 3 + 243199373 TAC i hg19.chr2 I 3 C 0 s panTro4.chr2B 235539653 3 + 247518478 TAC i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119496354 3 + 131632457 TAC i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122718214 3 + 135000294 TAC i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3680290 3 + 6458163 TAC i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94089258 3 + 106825570 TAC i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146769363 3 + 158406734 TAC i calJac3.chr6 I 3 C 0 s saiBol1.JH378144 19508 3 + 18451090 TAC i saiBol1.JH378144 I 3 C 0 s otoGar3.GL873532 28847681 3 - 32117204 AAC i otoGar3.GL873532 I 3 C 0 s turTru2.JH486691 25482 3 - 63237 TGG i turTru2.JH486691 C 0 I 461 s canFam3.chr25 42521581 3 + 51628933 TAT i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1078233 3 - 2169676 TAT i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17885892 3 + 84719076 TGC i equCab2.chr6 I 3 C 0 s xenTro3.GL172926 1337535 3 + 1453821 TAC i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=14227.000000 s mm10.chr1_GL456221_random 143100 3 + 206961 TTT s rn5.chr9 92387552 3 + 121549591 TTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172582 3 - 10418462 CTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161620 3 + 243199373 TTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539656 3 + 247518478 TTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496357 3 + 131632457 TTC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718217 3 + 135000294 TTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680293 3 + 6458163 TTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089261 3 + 106825570 TTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769366 3 + 158406734 TTG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19511 3 + 18451090 TTG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847684 3 - 32117204 TTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521584 3 + 51628933 TTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078236 3 - 2169676 TTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17885895 3 + 84719076 TTT i equCab2.chr6 C 0 C 0 s xenTro3.GL172926 1337538 3 + 1453821 CTT i xenTro3.GL172926 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=202906.000000 s mm10.chr1_GL456221_random 143103 43 + 206961 GATGAT-CCTCTTTTTCTCCTAGTAGATGCA--CAAGTC--CATAAAA s rn5.chr9 92387555 43 + 121549591 GATGAT-CCTCTTTTTCTCCTACTAGATACA--CAGATC--CATAAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172585 46 - 10418462 GTTGGCACTTCTTGTTCTCCTAATAGATGCG--TAGGCCAACATAAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161623 41 + 243199373 CACA---CTTTTTATTCTTTCAGTAGATATA--TAGGTC--CAAAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539659 41 + 247518478 CACA---CTTTTTATTCTTTCAGTAGATATA--TAGGTC--CAAAAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496360 41 + 131632457 CACA---CTTTTTATTCTTTCAGTAGATATA--TAGGTC--CAAAAAA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718220 41 + 135000294 GGCA---CTTTTTCTTCCCTCAGTACATATA--TAGGTC--CAAAAAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680296 41 + 6458163 CACA---CTTTTTATTCTCTCAGTAGATGTA--TAGGTC--CAGAAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089264 41 + 106825570 GGCA---CTTTTTATTCTCTCAGTAGATATA--TAGGCC--CCAAAAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769369 41 + 158406734 GGCA---CTTTTCATTCTCTCGGTAGATATG--TAGGCC--CATAAAA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19514 41 + 18451090 GGCA---CTTTTCATTCTCTCAGTAGATATG--TAGGTC--CATAAAA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847687 41 - 32117204 GGCA---TTTTTTATTCTCCTAGTAGATATG--TAGATC--TGTAAAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521587 41 + 51628933 GGTC---CTTTTTATTCTCCAAGTAGATATA--TAGGTC--CATAAAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078239 41 - 2169676 GGTA-----TTTTATTCTCCAAGTAGATATATTTAAGTC--CATAAAA i ailMel1.GL192536.1 C 0 I 86 s equCab2.chr6 17885898 39 + 84719076 GGCA-----CTTAATTCTCCTAGTAGATATG--AAGGTC--CATAAAA i equCab2.chr6 C 0 C 0 s xenTro3.GL172926 1337541 44 + 1453821 ACCAGAACCCCTTGCTGCAGCATTAGGCACA--CATTTC--CTTAGGC i xenTro3.GL172926 C 0 I 4 s oryLat2.chr18 29082606 43 + 29908082 GGTG---CGTCTCTCTTCTGTGGAGGATATA--CAAACAGGCATGAAT i oryLat2.chr18 N 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=-7800.000000 s mm10.chr1_GL456221_random 143146 9 + 206961 --ATAGATGT-----------G s rn5.chr9 92387598 20 + 121549591 --ATAGATATAAGGGGGGAGGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172631 14 - 10418462 --AGGGATGGAATAA------A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161664 16 + 243199373 --TCAGATATGAGGTAA----A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539700 16 + 247518478 --TCAGATATGAGGTAA----A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496401 16 + 131632457 --TCAGATATGAGGTAA----A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718261 16 + 135000294 --TCAGATATGAGATAA----A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680337 16 + 6458163 --TCAGATATGAGGTAA----A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089305 16 + 106825570 --TCAGATATGAGGTAA----A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769410 16 + 158406734 --TCAGGGGTGAGGTAA----A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19555 16 + 18451090 --TCAGATGTGAGGTAA----A i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847728 16 - 32117204 --TTAGATATGAAGTAA----A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42521628 9 + 51628933 --CCAAGTATG----------- i canFam3.chr25 C 0 N 0 s equCab2.chr6 17885937 9 + 84719076 --ACAGGTATG----------- i equCab2.chr6 C 0 C 0 s xenTro3.GL172926 1337589 7 + 1453821 --AAAGGCA------------- i xenTro3.GL172926 I 4 C 0 s oryLat2.chr18 29082649 9 + 29908082 GCTGAAGTT------------- i oryLat2.chr18 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=13518.000000 s mm10.chr1_GL456221_random 143155 3 + 206961 GGG s rn5.chr9 92387618 3 + 121549591 AGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172645 3 - 10418462 AGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161680 3 + 243199373 GGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539716 3 + 247518478 GGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496417 3 + 131632457 GGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718277 3 + 135000294 GGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680353 3 + 6458163 GGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089321 3 + 106825570 GGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769426 3 + 158406734 GGG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19571 3 + 18451090 AGG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847744 3 - 32117204 CAA i otoGar3.GL873532 C 0 C 0 s equCab2.chr6 17885946 3 + 84719076 AAG i equCab2.chr6 C 0 I 81 s xenTro3.GL172926 1337596 3 + 1453821 GGG i xenTro3.GL172926 C 0 I 1 s oryLat2.chr18 29082658 3 + 29908082 GTG i oryLat2.chr18 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=1656.000000 s mm10.chr1_GL456221_random 143158 3 + 206961 AGT s rn5.chr9 92387621 3 + 121549591 AAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172648 3 - 10418462 CAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161683 3 + 243199373 AAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539719 3 + 247518478 AAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496420 3 + 131632457 AAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718280 3 + 135000294 AAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680356 3 + 6458163 AAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089324 3 + 106825570 AAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769429 3 + 158406734 AAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19574 3 + 18451090 AAG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847747 3 - 32117204 TAG i otoGar3.GL873532 C 0 C 0 s xenTro3.GL172926 1337600 3 + 1453821 AAT i xenTro3.GL172926 I 1 C 0 s oryLat2.chr18 29082661 1 + 29908082 -A- i oryLat2.chr18 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=15987.000000 s mm10.chr1_GL456221_random 143161 11 + 206961 -AGCTACTTTAA s rn5.chr9 92387624 11 + 121549591 -AGATGTTTTAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172651 10 - 10418462 -A-TTGtgtaga i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161686 10 + 243199373 -A-CTGTTTACa i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539722 10 + 247518478 -A-CTGTTTAaa i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496423 10 + 131632457 -A-CTGTTTAaa i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718283 10 + 135000294 -A-CTGTttaaa i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680359 10 + 6458163 -A-Ctgttaaaa i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089327 10 + 106825570 -G-Ctgtttaaa i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769432 10 + 158406734 -A-CTGTTTAaa i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19577 10 + 18451090 -A-CTATTTTAa i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847750 10 - 32117204 -A-CTGtgttaa i otoGar3.GL873532 C 0 C 0 s anoCar2.chrUn_GL343303 1627972 10 + 1664127 -a-ttaccacAA i anoCar2.chrUn_GL343303 N 0 C 0 s xenTro3.GL172926 1337603 8 + 1453821 ----TGCCTCTG i xenTro3.GL172926 C 0 C 0 s oryLat2.chr18 29082662 11 + 29908082 AG-CTGGTGAAA i oryLat2.chr18 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=798.000000 s mm10.chr1_GL456221_random 143172 10 + 206961 GAGA-AACA-CT s rn5.chr9 92387635 10 + 121549591 GAGA-AACA-CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172661 11 - 10418462 gaga-aaaatct i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161696 11 + 243199373 aaaataaaa-ct i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539732 11 + 247518478 aaaataaaa-ct i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496433 11 + 131632457 aaaataaaa-ct i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718293 11 + 135000294 aaaataaaa-ct i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680369 11 + 6458163 aaaataaga-ct i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089337 10 + 106825570 aaaataa-a-ct i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769442 11 + 158406734 aaaacaaaa-ct i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19587 11 + 18451090 aaactaaaa-ct i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847760 10 - 32117204 aaga-aaaa-ct i otoGar3.GL873532 C 0 C 0 s anoCar2.chrUn_GL343303 1627982 10 + 1664127 GAGG-ATCG-CT i anoCar2.chrUn_GL343303 C 0 C 0 s xenTro3.GL172926 1337611 11 + 1453821 CACCCTAAA-CA i xenTro3.GL172926 C 0 N 0 s oryLat2.chr18 29082673 4 + 29908082 -----AACA--- i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044858 9 + 46386876 GAGAAAAGC--- i danRer7.chr23 N 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=26604.000000 s mm10.chr1_GL456221_random 143182 6 + 206961 TTAGGT s rn5.chr9 92387645 6 + 121549591 TTAGAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172672 6 - 10418462 ctagac i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161707 6 + 243199373 ttagac i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539743 6 + 247518478 ttaggc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496444 6 + 131632457 ttagac i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718304 6 + 135000294 tcagac i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680380 6 + 6458163 ttagac i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089347 6 + 106825570 ttagac i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769453 6 + 158406734 ttagac i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19598 6 + 18451090 ttagac i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847770 6 - 32117204 ttacac i otoGar3.GL873532 C 0 C 0 s anoCar2.chrUn_GL343303 1627992 6 + 1664127 GTTAGT i anoCar2.chrUn_GL343303 C 0 I 1 s oryLat2.chr18 29082677 6 + 29908082 ACAAGT i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044867 6 + 46386876 TCAAGC i danRer7.chr23 C 0 C 0 e sarHar1.chr2_GL842283_random 21251 627 + 34115 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=54976.000000 s mm10.chr1_GL456221_random 143188 22 + 206961 -------AGAATGAATTAAACCAGTATTT s rn5.chr9 92387651 22 + 121549591 -------AGAATGAATTAAATCAGCATTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172678 22 - 10418462 -------aaaataaatttgatgagcttgt i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161713 21 + 243199373 -------aaaataaaatttat-agcattt i hg19.chr2 C 0 I 3 s panTro4.chr2B 235539749 21 + 247518478 -------aaaataaaatttat-agcattt i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119496450 21 + 131632457 -------aaaataaatttaat-agcattt i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122718310 21 + 135000294 -------aaaataaatttaat-agcattt i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3680386 21 + 6458163 -------aaaataaaatttat-agcattt i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94089353 21 + 106825570 -------aaaataaaatttat-agcattt i rheMac3.chr12 C 0 I 3 s calJac3.chr6 146769459 21 + 158406734 -------aaaataaacttaat-agtattt i calJac3.chr6 C 0 I 63 s saiBol1.JH378144 19604 21 + 18451090 -------gaaataaatttaat-agtattt i saiBol1.JH378144 C 0 I 63 s otoGar3.GL873532 28847776 14 - 32117204 -------aaa-------taac-agaattt i otoGar3.GL873532 C 0 I 2 s sarHar1.chr2_GL842283_random 21878 21 + 34115 -------AGAATGAACTGAAC-AACTAAA i sarHar1.chr2_GL842283_random I 627 I 2 s anoCar2.chrUn_GL343303 1627999 22 + 1664127 -------AGAATGACTTCAACCAGCATAT i anoCar2.chrUn_GL343303 I 1 I 1 s oryLat2.chr18 29082683 24 + 29908082 ATTTGGAGGAGAAAATA-----ATTGATT i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044873 19 + 46386876 TT-----GAAATAAGTT-----ATCGTCA i danRer7.chr23 C 0 C 0 e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=1365.000000 s mm10.chr1_GL456221_random 143210 1 + 206961 T s rn5.chr9 92387673 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172700 1 - 10418462 t i speTri2.JH393335 C 0 C 0 s otoGar3.GL873532 28847792 1 - 32117204 t i otoGar3.GL873532 I 2 C 0 s oryLat2.chr18 29082707 1 + 29908082 T i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044892 1 + 46386876 T i danRer7.chr23 C 0 C 0 e sarHar1.chr2_GL842283_random 21899 2 + 34115 I e saiBol1.JH378144 19625 63 + 18451090 I e ponAbe2.chr2b 122718331 3 + 135000294 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e anoCar2.chrUn_GL343303 1628021 1 + 1664127 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e rheMac3.chr12 94089374 3 + 106825570 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680407 3 + 6458163 I e gorGor3.chr2B 119496471 3 + 131632457 I e panTro4.chr2B 235539770 3 + 247518478 I e hg19.chr2 231161734 3 + 243199373 I e calJac3.chr6 146769480 63 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62435 402 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=10514.000000 s mm10.chr1_GL456221_random 143211 3 + 206961 CAA s rn5.chr9 92387674 3 + 121549591 CAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172701 3 - 10418462 tga i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161737 3 + 243199373 tga i hg19.chr2 I 3 C 0 s panTro4.chr2B 235539773 3 + 247518478 tga i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119496474 3 + 131632457 gga i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122718334 3 + 135000294 gga i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3680410 3 + 6458163 tga i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94089377 3 + 106825570 tga i rheMac3.chr12 I 3 C 0 s papHam1.scaffold13267 62837 3 + 66950 caa i papHam1.scaffold13267 I 402 I 11 s otoGar3.GL873532 28847793 3 - 32117204 tga i otoGar3.GL873532 C 0 C 0 s sarHar1.chr2_GL842283_random 21901 2 + 34115 -AA i sarHar1.chr2_GL842283_random I 2 I 1 s anoCar2.chrUn_GL343303 1628022 2 + 1664127 -GA i anoCar2.chrUn_GL343303 I 1 I 1 s oryLat2.chr18 29082708 3 + 29908082 GGA i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044893 3 + 46386876 AGA i danRer7.chr23 C 0 C 0 e saiBol1.JH378144 19625 63 + 18451090 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e calJac3.chr6 146769480 63 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=5094.000000 s mm10.chr1_GL456221_random 143214 9 + 206961 TCAATGA---GT s rn5.chr9 92387677 9 + 121549591 TCGAAGA---AT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172704 12 - 10418462 gcgacaagaggg i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161740 9 + 243199373 gcaaaga---gc i hg19.chr2 C 0 I 3 s panTro4.chr2B 235539776 9 + 247518478 gcaaaga---gc i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119496477 9 + 131632457 gcaaaga---gc i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122718337 9 + 135000294 tcaaaga---gc i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3680413 9 + 6458163 gcaaaga---gc i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94089380 9 + 106825570 gcaaaga---gc i rheMac3.chr12 C 0 I 3 s otoGar3.GL873532 28847796 9 - 32117204 gtaaaga---gc i otoGar3.GL873532 C 0 I 3 s sarHar1.chr2_GL842283_random 21904 9 + 34115 GTGAAAA---GT i sarHar1.chr2_GL842283_random I 1 C 0 s anoCar2.chrUn_GL343303 1628025 9 + 1664127 TAAATTA---GT i anoCar2.chrUn_GL343303 I 1 C 0 s oryLat2.chr18 29082711 7 + 29908082 --AACAA--GA- i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044896 6 + 46386876 --AAGGA---A- i danRer7.chr23 C 0 C 0 e saiBol1.JH378144 19625 63 + 18451090 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e calJac3.chr6 146769480 63 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62840 11 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=21259.000000 s mm10.chr1_GL456221_random 143223 8 + 206961 TCAAGAGT s rn5.chr9 92387686 8 + 121549591 TTAAGAGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172716 8 - 10418462 tcatgagt i speTri2.JH393335 C 0 I 2 s hg19.chr2 231161752 8 + 243199373 tcatgaat i hg19.chr2 I 3 I 2 s panTro4.chr2B 235539788 8 + 247518478 tcatgaat i panTro4.chr2B I 3 I 2 s gorGor3.chr2B 119496489 8 + 131632457 tcatgaat i gorGor3.chr2B I 3 I 2 s ponAbe2.chr2b 122718349 8 + 135000294 tcatgaat i ponAbe2.chr2b I 3 I 297 s nomLeu2.GL397366 3680425 8 + 6458163 tcatgaat i nomLeu2.GL397366 I 3 I 2 s rheMac3.chr12 94089392 8 + 106825570 tcatgaat i rheMac3.chr12 I 3 I 2 s otoGar3.GL873532 28847808 8 - 32117204 ttatgaat i otoGar3.GL873532 I 3 I 2 s sarHar1.chr2_GL842283_random 21913 8 + 34115 TTAAAACC i sarHar1.chr2_GL842283_random C 0 C 0 s anoCar2.chrUn_GL343303 1628034 2 + 1664127 TC------ i anoCar2.chrUn_GL343303 C 0 C 0 s oryLat2.chr18 29082718 8 + 29908082 TCGCGGAT i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044902 7 + 46386876 TCAT-ACT i danRer7.chr23 C 0 C 0 e saiBol1.JH378144 19625 63 + 18451090 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e calJac3.chr6 146769480 63 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62840 11 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=4047.000000 s mm10.chr1_GL456221_random 143231 19 + 206961 GAATACACTCTG----TTAACAG------ s rn5.chr9 92387694 19 + 121549591 GAATACACTCTG----CCAACAG------ i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172726 19 - 10418462 ggcagcactcag----gtaagaa------ i speTri2.JH393335 I 2 C 0 s hg19.chr2 231161762 23 + 243199373 ggcagcactcagaacaaggagag------ i hg19.chr2 I 2 C 0 s panTro4.chr2B 235539798 23 + 247518478 ggcagcactcagaacaaggagag------ i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119496499 23 + 131632457 ggcagcactcagaacaaggagag------ i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 3680435 23 + 6458163 ggcagcactcagaacaaggagag------ i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94089402 23 + 106825570 ggcagcactcagaacaagaagag------ i rheMac3.chr12 I 2 C 0 s papHam1.scaffold13267 62851 23 + 66950 ggcagcgctcagaacaagaagag------ i papHam1.scaffold13267 I 11 C 0 s otoGar3.GL873532 28847818 22 - 32117204 gagagcactcag-accagaagag------ i otoGar3.GL873532 I 2 C 0 s sarHar1.chr2_GL842283_random 21921 19 + 34115 ----AAATACATTATTTTAACAG------ i sarHar1.chr2_GL842283_random C 0 N 0 s anoCar2.chrUn_GL343303 1628036 13 + 1664127 -------CTCAT---GTTGAAAG------ i anoCar2.chrUn_GL343303 C 0 C 0 s oryLat2.chr18 29082726 12 + 29908082 -----------------GAATAATCTCCG i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044909 8 + 46386876 -----------------TAATAATT---- i danRer7.chr23 C 0 C 0 e saiBol1.JH378144 19625 63 + 18451090 I e ponAbe2.chr2b 122718357 297 + 135000294 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e calJac3.chr6 146769480 63 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=-8096.000000 s mm10.chr1_GL456221_random 143250 36 + 206961 TTCCTGGG-AACCCCCTG------AAGGTGCACGAGGCCACAA------- s rn5.chr9 92387713 37 + 121549591 TTCTTGGGAAACCCCCTG------CAGGTGCATGAGGCCATAA------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172745 37 - 10418462 caccgctgagctccgatg------caccagcgtgagcaggcca------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161785 24 + 243199373 gttcagagaactctgctg------tagcag-------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539821 24 + 247518478 gttcagagaactctgctg------tagcag-------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496522 24 + 131632457 gttcagagaactctgctg------tagcag-------------------- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3680458 24 + 6458163 gttcagagaactctgctg------tagcag-------------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089425 24 + 106825570 gttcagagaactctgctg------cagcag-------------------- i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 62874 24 + 66950 gttcagagagctctgctg------cagcag-------------------- i papHam1.scaffold13267 C 0 C 0 s otoGar3.GL873532 28847840 21 - 32117204 gtttagagagctctgcta------tag----------------------- i otoGar3.GL873532 C 0 C 0 s anoCar2.chrUn_GL343303 1628049 24 + 1664127 ATTTTCTGAACTGaagtg------gctcag-------------------- i anoCar2.chrUn_GL343303 C 0 I 8 s oryLat2.chr18 29082738 36 + 29908082 -TCTTGTTAATCTGCCTGAAGGTGCAGAAG-------------GCTCCAA i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044917 31 + 46386876 -TTTTGTTAATTCTCTTCA-----CAGGAA-------------TTGACGA i danRer7.chr23 C 0 C 0 e saiBol1.JH378144 19625 63 + 18451090 I e ponAbe2.chr2b 122718357 297 + 135000294 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e calJac3.chr6 146769480 63 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=-15203.000000 s mm10.chr1_GL456221_random 143286 7 + 206961 CT----------TCTAC-- s rn5.chr9 92387750 7 + 121549591 CT----------TCTAC-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172782 7 - 10418462 ct----------ttcat-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161809 5 + 243199373 ------------cccag-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539845 5 + 247518478 ------------cccag-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496546 5 + 131632457 ------------cccag-- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3680482 5 + 6458163 ------------cccaa-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089449 5 + 106825570 ------------cccag-- i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 62898 5 + 66950 ------------cccag-- i papHam1.scaffold13267 C 0 C 0 s calJac3.chr6 146769543 17 + 158406734 cttctacagcagtccag-- i calJac3.chr6 I 63 C 0 s saiBol1.JH378144 19688 17 + 18451090 cttctgcagcagtccag-- i saiBol1.JH378144 I 63 C 0 s otoGar3.GL873532 28847861 4 - 32117204 -------------cctg-- i otoGar3.GL873532 C 0 I 4 s anoCar2.chrUn_GL343303 1628081 5 + 1664127 ------------CACAC-- i anoCar2.chrUn_GL343303 I 8 I 2 s oryLat2.chr18 29082774 7 + 29908082 ------------CATATGT i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044948 7 + 46386876 ------------TGTAGAT i danRer7.chr23 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131115 196 + 176633 I a score=5190.000000 s mm10.chr1_GL456221_random 143293 1 + 206961 A s rn5.chr9 92387757 1 + 121549591 A i rn5.chr9 C 0 I 2 s speTri2.JH393335 4172789 1 - 10418462 g i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161814 1 + 243199373 a i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539850 1 + 247518478 a i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496551 1 + 131632457 a i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3680487 1 + 6458163 a i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089454 1 + 106825570 a i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 62903 1 + 66950 a i papHam1.scaffold13267 C 0 C 0 s calJac3.chr6 146769560 1 + 158406734 a i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19705 1 + 18451090 a i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 131311 1 + 176633 a i micMur1.scaffold_3075 I 196 C 0 s otoGar3.GL873532 28847869 1 - 32117204 a i otoGar3.GL873532 I 4 C 0 s oryLat2.chr18 29082781 1 + 29908082 G i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044955 1 + 46386876 G i danRer7.chr23 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e anoCar2.chrUn_GL343303 1628086 2 + 1664127 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I a score=21801.000000 s mm10.chr1_GL456221_random 143294 18 + 206961 -----GATTTG----GGTCAACGTAAG- s speTri2.JH393335 4172790 18 - 10418462 -----ggctaa----ggtggaagtaag- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161815 18 + 243199373 -----cagtga----ggccaacacagg- i hg19.chr2 C 0 I 6 s panTro4.chr2B 235539851 18 + 247518478 -----cagtga----ggccaacacaga- i panTro4.chr2B C 0 I 6 s gorGor3.chr2B 119496552 18 + 131632457 -----cagtga----ggccaacacagg- i gorGor3.chr2B C 0 I 6 s nomLeu2.GL397366 3680488 18 + 6458163 -----cagtga----ggccaacacagg- i nomLeu2.GL397366 C 0 I 6 s rheMac3.chr12 94089455 18 + 106825570 -----cagtga----ggccaacaaagg- i rheMac3.chr12 C 0 I 6 s papHam1.scaffold13267 62904 18 + 66950 -----cagtga----ggccaacacagg- i papHam1.scaffold13267 C 0 I 217 s calJac3.chr6 146769561 18 + 158406734 -----cagtga----ggccaacacagg- i calJac3.chr6 C 0 I 6 s saiBol1.JH378144 19706 18 + 18451090 -----cagtga----ggccaacacagg- i saiBol1.JH378144 C 0 I 6 s micMur1.scaffold_3075 131312 16 + 176633 -----aattaa--ttggccaac----t- i micMur1.scaffold_3075 C 0 I 6 s otoGar3.GL873532 28847870 18 - 32117204 -----cagtga----ggctgatgtggg- i otoGar3.GL873532 C 0 I 6 s anoCar2.chrUn_GL343303 1628088 18 + 1664127 -----GAGCTG----GGTCTCAAGAGA- i anoCar2.chrUn_GL343303 I 2 C 0 s oryLat2.chr18 29082782 22 + 29908082 GATTTTTGGAAAGCTGGCTGCC------ i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044956 26 + 46386876 GACATCAGGGA--CTGGGTCACATTAAG i danRer7.chr23 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e rn5.chr9 92387758 2 + 121549591 I a score=42459.000000 s mm10.chr1_GL456221_random 143312 41 + 206961 ATTGAGAA-AC--ACGTGTGACTGGTCAGGAT--GGAAAATCCCTA s speTri2.JH393335 4172808 42 - 10418462 acagagaagat--acgtttaattggttagagt--ggaaagaccctg i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161839 42 + 243199373 acagagaaaCT--ATATTTAATGGGTTATCAT--AGAAAGATGAta i hg19.chr2 I 6 C 0 s panTro4.chr2B 235539875 42 + 247518478 acagagaaact--atatttaatgggttatcat--agaaagatgata i panTro4.chr2B I 6 C 0 s gorGor3.chr2B 119496576 42 + 131632457 acagagaaact--atatttaatgggttatcat--agaaagatgata i gorGor3.chr2B I 6 C 0 s nomLeu2.GL397366 3680512 42 + 6458163 acagagaaaCT--ATATTTAATGGGTTATCAt--agaaagatgata i nomLeu2.GL397366 I 6 C 0 s rheMac3.chr12 94089479 42 + 106825570 tcaggaaaact--aaatttactggcttatcat--ggaaagatgata i rheMac3.chr12 I 6 C 0 s calJac3.chr6 146769585 42 + 158406734 acagagaaact--atatttaatgcgttatcat--ggaaagatgcta i calJac3.chr6 I 6 C 0 s saiBol1.JH378144 19730 41 + 18451090 acagagaaact--ata-ttaatgggttatcat--ggaaagatgcta i saiBol1.JH378144 I 6 C 0 s micMur1.scaffold_3075 131334 38 + 176633 -tatagaaaa-----aattagcggggcatggt--ggcacgtgcctg i micMur1.scaffold_3075 I 6 I 886 s otoGar3.GL873532 28847894 41 - 32117204 -catagaaaat--atatttgattggtgagagc--agaaacatccta i otoGar3.GL873532 I 6 C 0 s anoCar2.chrUn_GL343303 1628106 41 + 1664127 -AGTAGTAAGC--CTGGGGATTGGGTCACCAA--ACACACTCCTTG i anoCar2.chrUn_GL343303 C 0 I 11 s oryLat2.chr18 29082804 37 + 29908082 ----TGAAGCC--CTGGATATTGCTCAACTGC---GACAGCCTCTA i oryLat2.chr18 C 0 C 0 s danRer7.chr23 18044982 42 + 46386876 ---ATGATGCTGATTTGAT-CTACACTATTGTTTGTACAATTTATA i danRer7.chr23 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e rn5.chr9 92387758 2 + 121549591 I a score=19573.000000 s mm10.chr1_GL456221_random 143353 8 + 206961 GTGAGAGA s speTri2.JH393335 4172850 8 - 10418462 gttaaaga i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161881 8 + 243199373 attagagg i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539917 8 + 247518478 attagagg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496618 8 + 131632457 attagagg i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3680554 8 + 6458163 attagagg i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089521 8 + 106825570 attagagg i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769627 8 + 158406734 attagagg i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19771 8 + 18451090 atcagaag i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847935 8 - 32117204 attagcgg i otoGar3.GL873532 C 0 C 0 s anoCar2.chrUn_GL343303 1628158 8 + 1664127 GTAGAAAA i anoCar2.chrUn_GL343303 I 11 C 0 s oryLat2.chr18 29082841 8 + 29908082 ACCATAGA i oryLat2.chr18 C 0 N 0 s danRer7.chr23 18045024 7 + 46386876 CCCA-AGA i danRer7.chr23 C 0 I 4 e ponAbe2.chr2b 122718357 297 + 135000294 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131372 886 + 176633 I e rn5.chr9 92387758 2 + 121549591 I a score=28076.000000 s mm10.chr1_GL456221_random 143361 21 + 206961 TTAG-GGAGAGGCTTTATGTGA s speTri2.JH393335 4172858 22 - 10418462 ttagctgttattttttttttaa i speTri2.JH393335 C 0 I 3 s hg19.chr2 231161889 21 + 243199373 ttagatggcagattctagttg- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539925 21 + 247518478 ttagatggcagattctagttg- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496626 20 + 131632457 -tagatggcagattctagctg- i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3680562 21 + 6458163 ttaaatggcagattctagttg- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089529 21 + 106825570 ttagatggcagattctagttg- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769635 21 + 158406734 ttagatggcggattctagttg- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19779 21 + 18451090 ttagatggcggattctagtgg- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847943 21 - 32117204 ttagctggcagtttctggttg- i otoGar3.GL873532 C 0 C 0 s anoCar2.chrUn_GL343303 1628166 13 + 1664127 CTGGGCTATACAT--------- i anoCar2.chrUn_GL343303 C 0 C 0 s danRer7.chr23 18045035 21 + 46386876 TAAAGGAGTGGCTTGATAATG- i danRer7.chr23 I 4 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131372 886 + 176633 I e rn5.chr9 92387758 2 + 121549591 I a score=115555.000000 s mm10.chr1_GL456221_random 143382 48 + 206961 CTACAGTGTCTCTTTTGATCTTG----------TTTGCTTT-ATCCTCTAATTTGTTTA s rn5.chr9 92387760 51 + 121549591 CTACAGTGTCTCCTTTGATCTTGCTG-------TTCACATT-ATCCACTAATTAGTTTA i rn5.chr9 I 2 C 0 s speTri2.JH393335 4172883 50 - 10418462 ctaaagtcactagtttctccttactg-------ttttcattgggctccccatt--ttta i speTri2.JH393335 I 3 C 0 s hg19.chr2 231161910 51 + 243199373 gtaaaatctctagtttcattttactg-------tttacatc-aggtttcagtttgctta i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539946 51 + 247518478 gtaaaatctctagtttcattttactg-------tttacatc-aggtttcagtttgctta i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496646 51 + 131632457 gtaaaatctctagtttcattttactg-------tttacatc-aggtttcagtttgctta i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3680583 51 + 6458163 gtaaagtccctagtttcattttactg-------tttacatc-aggtttcagtttgctta i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089550 51 + 106825570 gtaaagtctctagtttcattttattg-------tttatatc-agctttcagtttgctta i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769656 50 + 158406734 gcaaa-tctctagtttcattttactg-------tttacatc-aggtttcagtttgctta i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19800 51 + 18451090 gtaaagtctctagtttcattttactg-------tttacacc-aggtttcagtttgctta i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28847964 51 - 32117204 gttatgtgtccagtttcatcttgttg-------cttttatt-ggactttgatttgcttc i otoGar3.GL873532 C 0 C 0 s anoCar2.chrUn_GL343303 1628179 43 + 1664127 -----GTGGTTCATTAGCTTCT-----------TTCCCACCTAGATTTTGCTGTATTAC i anoCar2.chrUn_GL343303 C 0 C 0 s danRer7.chr23 18045056 48 + 46386876 ----------TTATTGTATTGTATTGTGTATTTTTTTCCTA-GTCATTGAAATTGTTTA i danRer7.chr23 C 0 N 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131372 886 + 176633 I a score=37552.000000 s mm10.chr1_GL456221_random 143430 10 + 206961 GATGGGAACT s rn5.chr9 92387811 10 + 121549591 TGTGGGAACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172933 10 - 10418462 tgtggacact i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161961 10 + 243199373 cttagaaact i hg19.chr2 C 0 C 0 s panTro4.chr2B 235539997 10 + 247518478 cttagaaact i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496697 10 + 131632457 cttagaaact i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3680634 10 + 6458163 cttagaaact i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089601 10 + 106825570 cttaggaact i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769706 10 + 158406734 cttaggaact i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19851 10 + 18451090 cttaggaact i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848015 10 - 32117204 cataggaact i otoGar3.GL873532 C 0 I 76 s anoCar2.chrUn_GL343303 1628222 10 + 1664127 CTCAGGAACC i anoCar2.chrUn_GL343303 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131372 886 + 176633 I a score=37718.000000 s mm10.chr1_GL456221_random 143440 32 + 206961 AAACA-AGCTCAACACTTGAGCTGTT---CCTACCT s rn5.chr9 92387821 32 + 121549591 AAACA-AGCTCAACACTTGAGTTGTT---CCTACCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172943 24 - 10418462 ---------taaagtcctgagccaac---ctaaccc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161971 25 + 243199373 --------taaaccactggagccacc---ccagcct i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540007 25 + 247518478 --------taaaccactggagccacc---ccagcct i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496707 25 + 131632457 --------taaaccactggagccacc---ccagcct i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3680644 25 + 6458163 --------taaaccactggagccacc---ccagcct i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089611 25 + 106825570 --------taaaccactggagccatc---ccagtct i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769716 25 + 158406734 --------taaagcactggagccacc---ccagcct i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 19861 25 + 18451090 --------tcaagcactggagccacc---ccagcct i saiBol1.JH378144 C 0 N 0 s anoCar2.chrUn_GL343303 1628232 34 + 1664127 --CCACATTCCTACTCTCTAGCTATTAAGCAGAGCT i anoCar2.chrUn_GL343303 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131372 886 + 176633 I a score=-4174.000000 s mm10.chr1_GL456221_random 143472 6 + 206961 A-AGAGC s rn5.chr9 92387853 6 + 121549591 A-TGAGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172967 7 - 10418462 actgatt i speTri2.JH393335 C 0 C 0 s hg19.chr2 231161996 6 + 243199373 -actggc i hg19.chr2 C 0 I 61 s panTro4.chr2B 235540032 6 + 247518478 -actggc i panTro4.chr2B C 0 I 61 s gorGor3.chr2B 119496732 6 + 131632457 -actggc i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3680669 6 + 6458163 -actggc i nomLeu2.GL397366 C 0 I 62 s rheMac3.chr12 94089636 6 + 106825570 -gcaggt i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769741 6 + 158406734 -gctggc i calJac3.chr6 C 0 C 0 s anoCar2.chrUn_GL343303 1628266 6 + 1664127 -ATGAGG i anoCar2.chrUn_GL343303 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131372 886 + 176633 I a score=781.000000 s mm10.chr1_GL456221_random 143478 1 + 206961 C s rn5.chr9 92387859 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172974 1 - 10418462 t i speTri2.JH393335 C 0 C 0 s gorGor3.chr2B 119496738 1 + 131632457 c i gorGor3.chr2B C 0 I 60 s rheMac3.chr12 94089642 1 + 106825570 c i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769747 1 + 158406734 c i calJac3.chr6 C 0 C 0 s anoCar2.chrUn_GL343303 1628272 1 + 1664127 C i anoCar2.chrUn_GL343303 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131372 886 + 176633 I a score=-2113.000000 s mm10.chr1_GL456221_random 143479 1 + 206961 -T s rn5.chr9 92387860 1 + 121549591 -C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172975 1 - 10418462 -c i speTri2.JH393335 C 0 C 0 s rheMac3.chr12 94089643 1 + 106825570 -t i rheMac3.chr12 C 0 I 61 s calJac3.chr6 146769748 1 + 158406734 -t i calJac3.chr6 C 0 I 1 s anoCar2.chrUn_GL343303 1628273 1 + 1664127 A- i anoCar2.chrUn_GL343303 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e gorGor3.chr2B 119496739 60 + 131632457 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131372 886 + 176633 I a score=-1951.000000 s mm10.chr1_GL456221_random 143480 2 + 206961 -CT s rn5.chr9 92387861 2 + 121549591 -CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172976 2 - 10418462 -ct i speTri2.JH393335 C 0 C 0 s calJac3.chr6 146769750 1 + 158406734 -c- i calJac3.chr6 I 1 I 80 s anoCar2.chrUn_GL343303 1628274 2 + 1664127 GT- i anoCar2.chrUn_GL343303 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e rheMac3.chr12 94089644 61 + 106825570 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e gorGor3.chr2B 119496739 60 + 131632457 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131372 886 + 176633 I a score=59.000000 s mm10.chr1_GL456221_random 143482 7 + 206961 AAATAAT--- s rn5.chr9 92387863 7 + 121549591 CAATAAT--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172978 7 - 10418462 aattaat--- i speTri2.JH393335 C 0 C 0 s anoCar2.chrUn_GL343303 1628276 7 + 1664127 ---TAGTTGC i anoCar2.chrUn_GL343303 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e rheMac3.chr12 94089644 61 + 106825570 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e gorGor3.chr2B 119496739 60 + 131632457 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e calJac3.chr6 146769751 80 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131372 886 + 176633 I a score=-1294.000000 s mm10.chr1_GL456221_random 143489 1 + 206961 -T s rn5.chr9 92387870 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4172985 1 - 10418462 -t i speTri2.JH393335 C 0 I 80 s saiBol1.JH378144 140171 1 + 18451090 -t i saiBol1.JH378144 N 0 C 0 s anoCar2.chrUn_GL343303 1628283 1 + 1664127 A- i anoCar2.chrUn_GL343303 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e rheMac3.chr12 94089644 61 + 106825570 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e gorGor3.chr2B 119496739 60 + 131632457 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e calJac3.chr6 146769751 80 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 131372 886 + 176633 I a score=7288.000000 s mm10.chr1_GL456221_random 143490 29 + 206961 AAGCAAATTTTATAggcaag----atgacgcaa s rn5.chr9 92387871 29 + 121549591 AAACAAATTTTATAggcaag----atggcacat i rn5.chr9 C 0 C 0 s saiBol1.JH378144 140172 29 + 18451090 acaaaaattagctgggcatg----gtggcgtgt i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_10815 33951 29 + 47586 aaaaaaattagccaggcatg----gtggcacat i micMur1.scaffold_10815 n 886 C 0 s anoCar2.chrUn_GL343303 1628284 29 + 1664127 ----AAACCATATATGTATATCACATGGGGCAA i anoCar2.chrUn_GL343303 C 0 N 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4172986 80 - 10418462 I e turTru2.JH486691 25485 461 - 63237 I e rheMac3.chr12 94089644 61 + 106825570 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e gorGor3.chr2B 119496739 60 + 131632457 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e calJac3.chr6 146769751 80 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I a score=14561.000000 s mm10.chr1_GL456221_random 143519 51 + 206961 ggctggaatcttagc-acatggaatgcagaagcagaaggat----------caggagttcaa s rn5.chr9 92387900 51 + 121549591 ggctggaatcccagc-acatggaatgtaaaagcagaaggat----------caggagttcaa i rn5.chr9 C 0 C 0 s saiBol1.JH378144 140201 62 + 18451090 gcctgtagtctcagctactcgggaggctgagacaggagaattgcttgaactcaggaggtaaa i saiBol1.JH378144 C 0 I 33 s micMur1.scaffold_10815 33980 62 + 47586 gcctgtagtcccagctacttgggaggctgaggcaggaggattgcttgagcccaggagtttga i micMur1.scaffold_10815 C 0 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4172986 80 - 10418462 I e turTru2.JH486691 25485 461 - 63237 I e rheMac3.chr12 94089644 61 + 106825570 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e gorGor3.chr2B 119496739 60 + 131632457 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e calJac3.chr6 146769751 80 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I a score=-2952.000000 s mm10.chr1_GL456221_random 143570 31 + 206961 gttcagccttggctatatagggagt--ccaagg s rn5.chr9 92387951 2 + 121549591 g-------------------------------g i rn5.chr9 C 0 C 0 s micMur1.scaffold_10815 34042 29 + 47586 ----ggttgctgtgagctaggctgttgccacgg i micMur1.scaffold_10815 C 0 I 8 e saiBol1.JH378144 140263 33 + 18451090 I e ponAbe2.chr2b 122718357 297 + 135000294 I e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4172986 80 - 10418462 I e turTru2.JH486691 25485 461 - 63237 I e rheMac3.chr12 94089644 61 + 106825570 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e gorGor3.chr2B 119496739 60 + 131632457 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e calJac3.chr6 146769751 80 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I a score=7446.000000 s mm10.chr1_GL456221_random 143601 50 + 206961 ctagcctgggc--taa-agtgagat-atatctcagaaGTAAGATTAATGCTGGT s rn5.chr9 92387953 50 + 121549591 ccagcctgggc--taa-agtgagac-atatctcagaaGTAAGATTAATGCTGGT i rn5.chr9 C 0 C 0 s saiBol1.JH378144 140296 47 + 18451090 ccagcctgggtaacaagagtgaaactctgtctcaaaat--aaataaata----- i saiBol1.JH378144 I 33 C 0 s micMur1.scaffold_10815 34079 36 + 47586 ctagcctgggcaacaa-agtgagactctgtctcaaaa----------------- i micMur1.scaffold_10815 I 8 C 0 e ponAbe2.chr2b 122718357 297 + 135000294 I e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4172986 80 - 10418462 I e turTru2.JH486691 25485 461 - 63237 I e rheMac3.chr12 94089644 61 + 106825570 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e gorGor3.chr2B 119496739 60 + 131632457 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e calJac3.chr6 146769751 80 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 62922 217 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I a score=2332.000000 s mm10.chr1_GL456221_random 143651 3 + 206961 GAT s rn5.chr9 92388003 3 + 121549591 GAC i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122718654 3 + 135000294 GAT i ponAbe2.chr2b I 297 C 0 s rheMac3.chr12 94089705 3 + 106825570 GAT i rheMac3.chr12 I 61 C 0 s papHam1.scaffold13267 63139 3 + 66950 GAT i papHam1.scaffold13267 I 217 C 0 e saiBol1.JH378144 140343 0 + 18451090 C e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4172986 80 - 10418462 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e gorGor3.chr2B 119496739 60 + 131632457 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e calJac3.chr6 146769751 80 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_10815 34115 0 + 47586 C a score=313.000000 s mm10.chr1_GL456221_random 143654 2 + 206961 GA s rn5.chr9 92388006 2 + 121549591 GA i rn5.chr9 C 0 C 0 s micMur1.scaffold_10815 34115 1 + 47586 -a i micMur1.scaffold_10815 C 0 C 0 e saiBol1.JH378144 140343 0 + 18451090 C e ponAbe2.chr2b 122718657 0 + 135000294 C e otoGar3.GL873532 28848025 76 - 32117204 I e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4172986 80 - 10418462 I e turTru2.JH486691 25485 461 - 63237 I e rheMac3.chr12 94089708 0 + 106825570 C e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e gorGor3.chr2B 119496739 60 + 131632457 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e calJac3.chr6 146769751 80 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63142 0 + 66950 C e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I a score=-6285.000000 s mm10.chr1_GL456221_random 143656 5 + 206961 ---TAAAA s rn5.chr9 92388008 5 + 121549591 ---TAAAA i rn5.chr9 C 0 C 0 s ponAbe2.chr2b 122718657 5 + 135000294 GACTA--- i ponAbe2.chr2b C 0 I 2 s rheMac3.chr12 94089708 5 + 106825570 GACTA--- i rheMac3.chr12 C 0 I 2 s papHam1.scaffold13267 63142 5 + 66950 GACTA--- i papHam1.scaffold13267 C 0 I 2 s saiBol1.JH378144 140343 4 + 18451090 -aata--- i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_10815 34116 3 + 47586 --aaa--- i micMur1.scaffold_10815 C 0 I 2 s otoGar3.GL873532 28848101 3 - 32117204 --TTA--- i otoGar3.GL873532 I 76 I 2 e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4172986 80 - 10418462 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680675 62 + 6458163 I e gorGor3.chr2B 119496739 60 + 131632457 I e panTro4.chr2B 235540038 61 + 247518478 I e hg19.chr2 231162002 61 + 243199373 I e calJac3.chr6 146769751 80 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I a score=14747.000000 s mm10.chr1_GL456221_random 143661 4 + 206961 CAAA s rn5.chr9 92388013 4 + 121549591 CAAA i rn5.chr9 C 0 C 0 s hg19.chr2 231162063 4 + 243199373 TAAA i hg19.chr2 I 61 C 0 s panTro4.chr2B 235540099 4 + 247518478 TAAA i panTro4.chr2B I 61 C 0 s gorGor3.chr2B 119496799 4 + 131632457 TAAA i gorGor3.chr2B I 60 C 0 s ponAbe2.chr2b 122718664 4 + 135000294 TAAA i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3680737 4 + 6458163 TAAA i nomLeu2.GL397366 I 62 C 0 s rheMac3.chr12 94089715 4 + 106825570 TAAA i rheMac3.chr12 I 2 C 0 s papHam1.scaffold13267 63149 4 + 66950 TAAA i papHam1.scaffold13267 I 2 C 0 s saiBol1.JH378144 140347 4 + 18451090 aaaG i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_10815 34121 4 + 47586 CACA i micMur1.scaffold_10815 I 2 n 2 s otoGar3.GL873532 28848106 4 - 32117204 CAAA i otoGar3.GL873532 I 2 I 6 e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4172986 80 - 10418462 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e calJac3.chr6 146769751 80 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I a score=40819.000000 s mm10.chr1_GL456221_random 143665 27 + 206961 TTTAAGCAACTGTCATTTGACTGTTTG s rn5.chr9 92388017 27 + 121549591 TTTAAGTAACTATCATTTGACTACTTG i rn5.chr9 C 0 C 0 s hg19.chr2 231162067 19 + 243199373 TTTAAATAAGTGATAGATG-------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540103 19 + 247518478 TTTAAATAAGTGATAGATG-------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496803 19 + 131632457 TTTAAATAAGTGATAGATG-------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718668 19 + 135000294 TTTAAGTAAGTGATAGATG-------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680741 19 + 6458163 TTTAAATAAGTGATAGATG-------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089719 19 + 106825570 TTTAAACAAATGATAGATG-------- i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 63153 19 + 66950 TTTAAGTAAGTGATAGATG-------- i papHam1.scaffold13267 C 0 C 0 s saiBol1.JH378144 140351 19 + 18451090 TCTGCTCAAATGTGGAGTT-------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848116 19 - 32117204 TTTAAATAAATAATATGTG-------- i otoGar3.GL873532 I 6 C 0 e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4172986 80 - 10418462 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e calJac3.chr6 146769751 80 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_10815 34125 2 + 47586 I a score=2489.000000 s mm10.chr1_GL456221_random 143692 17 + 206961 AATGAATAATCAGAT-----------------------------------------------------------------------------------------CT s rn5.chr9 92388044 106 + 121549591 AATGGATAATCATAtttttttttttcggagctggggaccgaacccagggccttgagcttgctaggcaagtgctctactaaatccacaacccGGGATAATCATATCT i rn5.chr9 C 0 C 0 s hg19.chr2 231162086 15 + 243199373 ---GAAACAATGCATTCA---------------------------------------------------------------------------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540122 15 + 247518478 ---GAAACATCACATTCA---------------------------------------------------------------------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496822 15 + 131632457 ---GAAACATCACATTCA---------------------------------------------------------------------------------------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718687 15 + 135000294 ---GAAACAATGCATTCA---------------------------------------------------------------------------------------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680760 15 + 6458163 ---GAAACATCACATTCA---------------------------------------------------------------------------------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089738 15 + 106825570 ---GAAACATTACGTTCA---------------------------------------------------------------------------------------- i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 63172 15 + 66950 ---GAAACAATGCATTCA---------------------------------------------------------------------------------------- i papHam1.scaffold13267 C 0 C 0 s calJac3.chr6 146769831 15 + 158406734 ---GAGACAACACATTCA---------------------------------------------------------------------------------------- i calJac3.chr6 I 80 C 0 s saiBol1.JH378144 140370 18 + 18451090 AATGAAAAATCACACTCA---------------------------------------------------------------------------------------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848135 15 - 32117204 ---CAAGTATGACATTCA---------------------------------------------------------------------------------------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42627565 17 + 51628933 AATGAAAAATCATATTC----------------------------------------------------------------------------------------- i canFam3.chr25 N 0 I 2 e ailMel1.GL192536.1 1078280 86 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4172986 80 - 10418462 I e turTru2.JH486691 25485 461 - 63237 I e equCab2.chr6 17885949 81 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_10815 34125 2 + 47586 I a score=546.000000 s mm10.chr1_GL456221_random 143709 1 + 206961 T s rn5.chr9 92388150 1 + 121549591 T i rn5.chr9 C 0 C 0 s canFam3.chr25 42627584 1 + 51628933 T i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1078366 1 - 2169676 T i ailMel1.GL192536.1 I 86 C 0 e saiBol1.JH378144 140388 0 + 18451090 C e ponAbe2.chr2b 122718702 0 + 135000294 C e otoGar3.GL873532 28848150 0 - 32117204 C e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4172986 80 - 10418462 I e turTru2.JH486691 25485 461 - 63237 I e rheMac3.chr12 94089753 0 + 106825570 C e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680775 0 + 6458163 C e gorGor3.chr2B 119496837 0 + 131632457 C e panTro4.chr2B 235540137 0 + 247518478 C e hg19.chr2 231162101 0 + 243199373 C e calJac3.chr6 146769846 0 + 158406734 C e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63187 0 + 66950 C e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_10815 34125 2 + 47586 I a score=276.000000 s mm10.chr1_GL456221_random 143710 4 + 206961 ATAC s rn5.chr9 92388151 4 + 121549591 AGAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173066 4 - 10418462 ATAG i speTri2.JH393335 I 80 C 0 s canFam3.chr25 42627585 4 + 51628933 ATTG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078367 4 - 2169676 ATTG i ailMel1.GL192536.1 C 0 C 0 e saiBol1.JH378144 140388 0 + 18451090 C e ponAbe2.chr2b 122718702 0 + 135000294 C e otoGar3.GL873532 28848150 0 - 32117204 C e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e rheMac3.chr12 94089753 0 + 106825570 C e equCab2.chr6 17885949 81 + 84719076 I e nomLeu2.GL397366 3680775 0 + 6458163 C e gorGor3.chr2B 119496837 0 + 131632457 C e panTro4.chr2B 235540137 0 + 247518478 C e hg19.chr2 231162101 0 + 243199373 C e calJac3.chr6 146769846 0 + 158406734 C e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63187 0 + 66950 C e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_10815 34125 2 + 47586 I a score=42051.000000 s mm10.chr1_GL456221_random 143714 12 + 206961 T---------CACTCAAATCT s rn5.chr9 92388155 21 + 121549591 TTAATATTATCACTCAAATTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173070 12 - 10418462 T---------CACCGAATATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162101 18 + 243199373 ---ATATCATAAATCAATCTT i hg19.chr2 C 0 I 4 s panTro4.chr2B 235540137 18 + 247518478 ---ATATTATAAATCAATCTT i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119496837 18 + 131632457 ---ATATTGTAAATCAATCTT i gorGor3.chr2B C 0 I 4 s ponAbe2.chr2b 122718702 18 + 135000294 ---ATATCATAAATCAATCTT i ponAbe2.chr2b C 0 I 4 s nomLeu2.GL397366 3680775 18 + 6458163 ---ATATTGTAAATCAATCTT i nomLeu2.GL397366 C 0 I 5 s rheMac3.chr12 94089753 18 + 106825570 ---ATATTGTAAATCAATCTT i rheMac3.chr12 C 0 I 5 s papHam1.scaffold13267 63187 18 + 66950 ---GTATCATAAATCAATCTT i papHam1.scaffold13267 C 0 I 546 s calJac3.chr6 146769846 17 + 158406734 ---ATATTATAAATCAA-CTT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 140388 18 + 18451090 ---ATATTGTAAGCCAATCTT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848150 18 - 32117204 ---GTAGGGTCATTTGATTTG i otoGar3.GL873532 C 0 I 4 s canFam3.chr25 42627589 12 + 51628933 ---------TCACTCAATCTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078371 12 - 2169676 ---------TCATTTAATCTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17886030 12 + 84719076 ---------TCACTCAATTAT i equCab2.chr6 I 81 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_10815 34125 2 + 47586 I a score=-25009.000000 s mm10.chr1_GL456221_random 143726 4 + 206961 --TCT-C s rn5.chr9 92388176 4 + 121549591 --TAT-T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173082 4 - 10418462 --TTT-C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162123 3 + 243199373 --TTT-- i hg19.chr2 I 4 C 0 s panTro4.chr2B 235540159 3 + 247518478 --TTT-- i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119496859 3 + 131632457 --TTT-- i gorGor3.chr2B I 4 C 0 s ponAbe2.chr2b 122718724 3 + 135000294 --TTT-- i ponAbe2.chr2b I 4 C 0 s nomLeu2.GL397366 3680798 3 + 6458163 --TTT-- i nomLeu2.GL397366 I 5 C 0 s rheMac3.chr12 94089776 3 + 106825570 --TTT-- i rheMac3.chr12 I 5 C 0 s calJac3.chr6 146769863 4 + 158406734 --TCTT- i calJac3.chr6 C 0 I 2 s saiBol1.JH378144 140406 4 + 18451090 --TCTG- i saiBol1.JH378144 C 0 N 0 s otoGar3.GL873532 28848172 3 - 32117204 --TCT-- i otoGar3.GL873532 I 4 C 0 s canFam3.chr25 42627601 4 + 51628933 TCTC--- i canFam3.chr25 C 0 I 3 s ailMel1.GL192536.1 1078383 4 - 2169676 TCTC--- i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17886042 4 + 84719076 TCTC--- i equCab2.chr6 C 0 I 3 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_10815 34125 2 + 47586 I a score=566668.000000 s mm10.chr1_GL456221_random 143730 137 + 206961 TTTCAGCAGAGAACAC--AGAACTTGCATCGTT-CCCCAGCTGACCCTAGTGTAAGTACT--GACTCCTAGCTACAATCCCTGAAAGGCCCCG--------TCTCAT-T-GGTGCTTTGCCTGTG-ACTTGGTTGCCTCTCCCTTAAAGAGA--C s rn5.chr9 92388180 124 + 121549591 TT--AGAAGAGAACAC--AAAGTTTGCATCATT-TCCCAGCGGACCCAGACGTAAGTACT--GACTCCTAATTATAATCCCTGAAAAGCCCCA----GCCTTCTTCT-T-GGTGC----------------GTTGTCTCTCCCTTAAAGGGA--C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173086 137 - 10418462 TTTCAACAGACAACACTACAGACTCACAACAAT------GTTGACCCGGATGTAAGTACT--AACTCCCAGCTGTATCCCCAGA-----CCCATAAGACCTTTTTCC-A-AGCACATTTCCTGTG-TCATGACTGCTTTTCCCCGAAGTGCA--C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162126 145 + 243199373 TTTCAACAGAGAATACTGAAGTCTCAAAACAATAGCTCAGTTGACCCTTGTGTAAGTACA--AATTCTGAACTACGACCCCCAGAATATTCCA---CTCCTTTCTCC-A-GGCATATGTTCTGTG-TCATGACTGCTGTTGCCTGAATCATG--T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540162 147 + 247518478 TTTCAACAGAGAATACTGAAGTCTCACAACAATAACTCAGTTGACCCTTGTGTAAGTACA--AATTCTGAACTATGACCCCCAGAATATTCCA---CTCCTTTTTCCAA-GGCATATGTTCTGTGTTCATGACTGCTGTTGCCTGAAGCATG--T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119496862 145 + 131632457 TTTCAACAGAGAATACTGAAGTCTCACAACAATAACTCAGTTGACCCTTGTGTAAGTACA--AATTCTGAACTATGACCCCCAGAATATTCCA---CTCCTTTCTCC-A-TGCATATGTTCTGTG-TCATGACTGCTGTTGCCTGAAGCATG--T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718727 145 + 135000294 TTTCAACAGAGAATACCGAAGTCTCAAAACAATAGCTCAGTTGACCGTTGTGTAAGTACA--AATTCTGAACTACGGCCCCCAGAATATTCCA---CTCCTTTCTCC-A-GGCATATGTTCTGTG-TCATGACTGCTGTTGCCTGAAGCATG--T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680801 145 + 6458163 TTTCAACAGAGAATACTGAAGTCTCAAAACAATAGCTCAGTTGACCCTTGTGTAAGTACA--AATCCTGAACTATGAACCCCAGAATATTCCA---CTCCTTTCTCC-A-GGCATATGTTCTGTG-TCGTGACTGCTGTTGCCTGAAGCATG--T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089779 145 + 106825570 TTTCAACAGAGAATACTGAAGTCTCACAACAATACTTCAGTTGACCCTTGTGTAAGTATA--AATTCTGAACTATGACCCCCAGAATATTCCA---CTCCTTTCTCC-A-GGGATATGTTCTGTG-TCATGACTGCTGTTCCCTGAAGCATG--T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146769869 145 + 158406734 TTTCAACAGCGAATACTGAAGTCTCACAAGAATACCTCAGTTGACCCTTGTGTAAGTACA--AATTCTGAACTATTACTCCCAGAATGTCCCA---CTCCTTTCTCC-A-GGCATATGTTCTGTG-TCATGCCTGCTGTTCTCTGAAATATG--T i calJac3.chr6 I 2 C 0 s saiBol1.JH378144 19997 142 + 18451090 TTTTGGCAGAGAATACTGAAGACTCAC---AATACTTCAGTTGACCCTTGTGTAAGTACA--AATTCTGAACTATGACCCACAGAATGCCCCA---CTCCTTTCTCC-A-GGCGTATGTTCTGTG-TCATGACTGCTGTTCCCTGGAGCATG--T i saiBol1.JH378144 N 0 C 0 s otoGar3.GL873532 28848175 140 - 32117204 TTTCAGCGGAGGATACTGAAGTCTCACGATACTAACTCAGATGATCCTTCTGTAAGTATT--AATTTCCTACTATTATAT---GAATATTCCA---CATCTTTC-CT-A-GGCATTTG-TCTGTG-TCATTTCTGCTTTTTCCTGAAGCATG--C i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42627608 132 + 51628933 TTTC---------------AGTCTAGCAGCAACAACTTTTTTGACCCTTATGTAAGTACTTACTCCCTCACCCGTGACCC-CAGAATAATCCA---GGCCTTATCCC-TCCATACATTACCTGTG-TCATTGCTGGGTTTCCCTGCTACACG--T i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1078390 134 - 2169676 TTTCAGCGGACAATACCAAAGTCTTACAACAACACCTTAGTTGACCCTTATGTAAGTACT-------ACACCTGTAACCC-CAG-ATAATCCA---GGCCTTGTCCC-T-GGTGCA----CTGTG-TCATTGCTGTGTTTCCCTAATGTGTG--C i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17886049 143 + 84719076 TTTCAGCCGACAATACTGAAGTCTCCCAACAATGCCTTAGTAGACCCCTATGTAAGTACT------CCTACCTGTAACCC-CAGAGTAATCCA---GGCCTTCTCCC-TCGGTACATTATCTGTG-TCATTGCTGCTTTTCCCTGAAGCATGCTC i equCab2.chr6 I 3 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_10815 34125 2 + 47586 I a score=346983.000000 s mm10.chr1_GL456221_random 143867 150 + 206961 -TCAACTCTCAATTTAGGTATGCTG-TATGGGTGAAGTGCCATCATTACCAGACCTGTCCC----ACAACCAAGGCAGGAGGAGCCA--CACT--------GGGTGTTT--GGGT---CAGAAACA--TCCTAC----TACATGGCCA-GCATGGGTTCTCATATCCTCAT-------TTACCCT s rn5.chr9 92388304 142 + 121549591 -CCACCTGTCGGTTTAGATATGCTGCTGTGAGTAAAGAGTCATCATTACCAAACCTATCCC----ACAACCAAGGTAGGAGAAGTCA--CTGT--------GGGTGTTT--GGGT---CAGAAGCA--TCTGAC----TACATGG----------GATCATATATTCTCAT-------TTACCCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173223 138 - 10418462 -TCAC---TCACTGTAG-TATGTTGCTGTGTGCAATGAACAAAGAATATCA----------------AGACAGGGACATGGGTCTGA--CACT--------GGGTGTCT--CCAC---TGAAAGTA--CCCTTCCC-TTATATTTCAGTGGAAAACTTCCCGTG-CCTCGT-------CCCCCCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162271 144 + 243199373 -TCAG-TCTCAGCTGGAGTATGTGGCTGTGT------------GAAT-TCAGTTGCATCAC----CCAAGCCAGGTAGATGTGCCTGGGCCTT--------GGATGTCT--CATTA--TGAAAGCA--CCCTTTCC-ATCTGTTTCAGTAGAAACCTTCCAATGTCCTTAT-------TTCCCCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540309 144 + 247518478 -TCAG-TCTCAGTTGGAGTATGCCGCTGTGG------------GAAT-TCAGTTGCATCAC----CCACGCCAGGTAGATGTGCCTGGGCCTT--------GGATGTCT--CATTA--TGAAAGCA--CCCTTTCC-ATCTGTTTCAGTAGAAACCTTCCAATGTCCTTAT-------TTCCCCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497007 144 + 131632457 -TCAG-TCTCAGTTGGAGTATGTGGCTGTGT------------GAAT-TCAGTTGCATCAC----CCAAGCCAGGTAGATGTGCCTGGGCCTT--------GGATGTCT--CATTA--TGAAAGCA--CCCTTTCC-ATCTGTTTCAGTAGAAAGCTTCCAATGTCCTTAT-------TTCCCCT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122718872 153 + 135000294 -TCAG-TCTCAATTGGAGTATGTGGCTGTGT------------GAAT-TCAGTTGCATCAC----CCAAGCCAGGTAGATGTGCCTGGGCCTT--------GGATGTCTTGCAGTG--TGAAAGCA--CCCTTTCC-ATCTGTTTCAGTGGAAACCCTCCAATATCCTTACTTCCTTATTCCCTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3680946 157 + 6458163 -TCAG-TCTCAGTTGGAGTATGTTGCTGTGTGTGATGACCAAAGAATGCCAGATGCATCAC----CCAGGCCAGGTAGATGTGCCTGGGCCTT--------GGATGTCT--CATTA--TGAAAGCA--CCCTTTCC-ATCTGTTTTAGTAGAAACCTTCCAATTTCCTTAT-------TTCCCCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94089924 161 + 106825570 -TCAG-TCTCAGTTGGAGTATGTTGCTGTGTGTGATGACCAAAGAATGCCAGATGCATCAC----CCAAGCCAGGCAGATGTGCCTGGGCCTT--------GGATGTCT--CAGTG--TGAAAGCA--CCCTTTCC-ATCTGTTTCAGTAGAAACCTTCCAATGTCCTTATTTAT---TTCCCCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770014 156 + 158406734 -TCAG-TCTCAGTTGGAGTATGTTGCTGTGTGTGATGAGCAAAGAATACCAGATGCATCAC----CGAAGCCAGGTATATGTGTCTGGG-CTT--------GGCTGTCT--CAGTG--TGAAAGAA--CTCTTTCC-CTTTGTTTCAGTGGAATCCTTCCAAAGTCCTTAT-------TTCCCCT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20139 141 + 18451090 --------TCAGTTGGAGTATGTTGATGTGTGTGAAGAGCAAAGAATACCAGATGTATCCC----CCAAGCCAGGTAGATGTGCCCAGGCCTT--------AGCTGTCT--CTCTG--TGAAAGAA--CCCTTTCC-ATCTGCTTCAGTGG----------AAGTCCTTAT-------TTCCCCT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848315 154 - 32117204 -TCAC-TTTTAGTTAAAATATATTGCTATGTGTGGTGAGCAAAGCATAACAGATGTATGAC----CCAAGCCAGGAGCATGGGTCAGG--CTT--------GG-TATCT--CAGCA--AGAAAGCA--TACTTTCC-ATTTGTTTTTATGGAAACCTTCCCATTTTCTCAT-------TTCTCCT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42627740 152 + 51628933 -GCAC-ACTCAGTTGGAGCGCGCC-TTGGGTGTGATGAGCAGAGAATGGCAGACGCGTTAC----CCACACCAGGGAGCTGATTTGGGAGCT----------GGTGTCT--CTGCA--TGAAAGTC--TCCTTTCC-ATTTGT-TCAG-GGAAACCTTCCTGTTTCCTTAT-------TTCCCCT i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1078524 160 - 2169676 -CCAC-ACTCAGTTGGAGCGTGTCACTGTACGCGATGAGCAGAGAACAGCAGACGGATCAC----CTGCACCAGGAAGGTGGTTCTGGAGAC----------CGTGTGTGGTTGCATTTGTTATTTCATCCTTTCCTATTTGC-TCAG-GGAAACCTTCCTGTTTCCTCAT-------GTCCCCT i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17886192 155 + 84719076 -ACAC-ACTCAGTGGGAGCATGTTGCTGTGTGTAATGAGCAGAGACTAGTAGATGCATCAC----CTATACCAGGTAGATGGTTCTGGGGTT---------GGGTATCT--CAGTG--TGAAAGCA--TCCTTTCC-ATTTGT-TCAGTGGAAAACTTCCCATTTCCTCAT-------TTCCCCT i equCab2.chr6 C 0 C 0 s xenTro3.GL173050 1017540 106 - 1070475 TCCAC-TATCAATTCAA------TGCTCCGT------------AGATGGAAAATCGATCACACTATCAGCTCCGGAGGACATACCAAGGTTTTTGCAAGCCTGCGGTCT--CAC----CAATATTG--ACCTT---------------------------------------------------- i xenTro3.GL173050 N 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25485 461 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e felCat5.chrC1 212445117 453 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_10815 34125 2 + 47586 I a score=-16770.000000 s mm10.chr1_GL456221_random 144017 2 + 206961 -AG s rn5.chr9 92388446 2 + 121549591 -CA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173361 2 - 10418462 -CC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162415 2 + 243199373 -GG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540453 2 + 247518478 -GG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497151 2 + 131632457 -GG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719025 2 + 135000294 -GG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681103 2 + 6458163 -GG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090085 2 + 106825570 -GG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770170 2 + 158406734 -GG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20280 2 + 18451090 -GG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848469 2 - 32117204 -GG i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 25946 1 - 63237 --G i turTru2.JH486691 I 461 C 0 s felCat5.chrC1 212445570 1 + 221441202 --G i felCat5.chrC1 I 453 C 0 s canFam3.chr25 42627893 1 + 51628933 --A i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1078685 1 - 2169676 --G i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17886347 2 + 84719076 -TG i equCab2.chr6 C 0 C 0 s xenTro3.GL173050 1017646 3 - 1070475 ACG i xenTro3.GL173050 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_10815 34125 2 + 47586 I a score=11422.000000 s mm10.chr1_GL456221_random 144019 1 + 206961 A s rn5.chr9 92388448 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173363 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162417 1 + 243199373 A i hg19.chr2 C 0 I 8 s panTro4.chr2B 235540455 1 + 247518478 A i panTro4.chr2B C 0 I 8 s gorGor3.chr2B 119497153 1 + 131632457 A i gorGor3.chr2B C 0 I 8 s ponAbe2.chr2b 122719027 1 + 135000294 G i ponAbe2.chr2b C 0 I 8 s nomLeu2.GL397366 3681105 1 + 6458163 A i nomLeu2.GL397366 C 0 I 8 s rheMac3.chr12 94090087 1 + 106825570 A i rheMac3.chr12 C 0 I 8 s calJac3.chr6 146770172 1 + 158406734 A i calJac3.chr6 C 0 I 8 s saiBol1.JH378144 20282 1 + 18451090 A i saiBol1.JH378144 C 0 I 8 s micMur1.scaffold_3075 132258 1 + 176633 A i micMur1.scaffold_3075 I 886 I 181 s otoGar3.GL873532 28848471 1 - 32117204 A i otoGar3.GL873532 C 0 I 8 s turTru2.JH486691 25947 1 - 63237 A i turTru2.JH486691 C 0 I 1970 s felCat5.chrC1 212445571 1 + 221441202 A i felCat5.chrC1 C 0 C 0 s canFam3.chr25 42627894 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078686 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17886349 1 + 84719076 A i equCab2.chr6 C 0 C 0 s xenTro3.GL173050 1017649 1 - 1070475 G i xenTro3.GL173050 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I a score=1694.000000 s mm10.chr1_GL456221_random 144020 1 + 206961 G s rn5.chr9 92388449 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173364 1 - 10418462 A i speTri2.JH393335 C 0 I 6 s felCat5.chrC1 212445572 1 + 221441202 A i felCat5.chrC1 C 0 I 191 s canFam3.chr25 42627895 1 + 51628933 A i canFam3.chr25 C 0 I 7 s ailMel1.GL192536.1 1078687 1 - 2169676 A i ailMel1.GL192536.1 C 0 I 7 s equCab2.chr6 17886350 1 + 84719076 A i equCab2.chr6 C 0 I 7 s xenTro3.GL173050 1017650 1 - 1070475 A i xenTro3.GL173050 C 0 C 0 e saiBol1.JH378144 20283 8 + 18451090 I e ponAbe2.chr2b 122719028 8 + 135000294 I e otoGar3.GL873532 28848472 8 - 32117204 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090088 8 + 106825570 I e nomLeu2.GL397366 3681106 8 + 6458163 I e gorGor3.chr2B 119497154 8 + 131632457 I e panTro4.chr2B 235540456 8 + 247518478 I e hg19.chr2 231162418 8 + 243199373 I e calJac3.chr6 146770173 8 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 132259 181 + 176633 I a score=671348.000000 s mm10.chr1_GL456221_random 144021 153 + 206961 G-TGGG--AGATAGAGTTTTAGATCACTGGGGTCCCT---GGTACAAAACCTGACATGGCAGTGGGCCTGGCTGGC-TTT-GGATGAAGGGT-AAGAG-------CAAATACAGGAGG-AGACAG-------------CA-TTTGCAAAGGGCAGT--GTATGG----------AATGAAAACATCCTAGCATGTA s rn5.chr9 92388450 144 + 121549591 G-TGGG--AGACAGAGTTCTAGATTACTGGGGTCCCT---GGGACAGAACCTGGCATGACAGTGGGCCTGGCTGGC-TTT-GGATGAAGGGTGAAGGG-------CAAATACAGGAGG-AGATAC-------------CA-TTCCCAAAGGACAGT----------------------AAAACATCCTAGCTCAGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173371 151 - 10418462 G-TGGG--AAGCAGAGATCTAGA-------------------GGCAGAA-TTGAAGTAGGGATGGTCAGGAATGGC-CTGAAGATGAGGGGCATACAG-------CAACTTTGAGAGGAAAACAG-------------CACTTTAAAGAAGTCAGTGGGGATGGAAAGGGTGGTAAGGAAAATAT-GTGACGTCCA i speTri2.JH393335 I 6 C 0 s hg19.chr2 231162426 160 + 243199373 A-TGGG--AGGCTGAGCTCCAGACCACTGAGGTCTCT--TGAGACAGAGCCTGAAGTGGTAATGGGTAGGGCTGGC-CTGGTGATTAGGGGGAAGGAA-------CAAATGTGAGAGGATAACAG-------------CATTTTCAAGTAAGTGGTGTGGATGA----------AAGGGAAAGTCCTAAAAATGCA i hg19.chr2 I 8 I 1 s panTro4.chr2B 235540464 160 + 247518478 A-TGGG--AGGCTTAGCTCCAGACCACTGAGGTCTCT--TGAGACAGAGCCTGAAGTGGTAATGGGTAGGGCTGGC-CTGGTGATTAGGGGGAAGGAA-------CAAATGTGAGAGGATAACAG-------------CATTTTCAAGTAAGTGGTGTGGATGA----------AAGGGAAAGTCCCAAAAATGCA i panTro4.chr2B I 8 I 1 s gorGor3.chr2B 119497162 160 + 131632457 A-TGGG--AGGCTGAGCTCCAGACCACTGAGGTCTCT--TGAGACAGAGCCTGAAGTGGTAATGGGTAGGGCTGGC-CTGTTGATTAGGGGGAAGGAA-------CAAATGTGAGAGGATAACAG-------------CATTTTCAAGTAAGTGGTGTGGATGA----------AAGGGAAAGTCCCAAAAATGCA i gorGor3.chr2B I 8 I 1 s ponAbe2.chr2b 122719036 160 + 135000294 A-TGGG--AGGCTGAGCTCTAGACCACTGAGGTCTCT--TGAAACAGAGCTTGAAGTGGTAAAGGGTAGGGCTGGC-CTGGTGATTAGGGGGAAGGGG-------TAAATGTGAGAGGATAACAG-------------CATTCTCAAGTAAGGGGTATGGATGA----------AAGGGAAGATCCCAAAAATGCC i ponAbe2.chr2b I 8 I 1 s nomLeu2.GL397366 3681114 160 + 6458163 A-TGGG--AGGCTGAGCTCTAGACCACTGAGGTCTCT--TGAGACAGAGCCTGAAGTGGTAATGGGTAGGGCTGGC-CTGATCATTAGGGGGAAGGAG-------AAAATGTGAGAGGATAACAG-------------CATTTTCAAGTAAGTGGTGTGGATGA----------AAGGGAAAGTCCCAAAAATGCA i nomLeu2.GL397366 I 8 I 1 s rheMac3.chr12 94090096 160 + 106825570 G-TAGG--AGGCTGAGCTCTATACCACTGAGGTCTCT--TGAGACAGAGCTTGAAGTGGTAATGAGTAGGGCTGGC-CTGGTGAGTAAGGGGAAGGAG-------CAAATGTGAAAGGATAATAG-------------CATTTTCAAGTAAGGGGTGTGGGTGA----------AAGGGAAAGTCCCCAGAATGTA i rheMac3.chr12 I 8 I 1 s calJac3.chr6 146770181 160 + 158406734 A-TAGG--AGGCTGAGCTCTAGACCCCTGTGGTTTCT--AGAGACAAAGCTTGAAGTGGTAATGGGTAGGGCTGGC-TTGGTGATTAGGGGGAAGGAG-------CAAATGTGAGAGGATAAGAG-------------CATTTTCAAGTAAGTGGTGTGGATGA----------AAGGGAAAATCCCAAAAATGCA i calJac3.chr6 I 8 I 1 s saiBol1.JH378144 20291 159 + 18451090 A-TAG----------------GGCCCCTGAGGTCTCT--AGAGACAGAGCTTGAAGTGGCAACGGGTAAGGCTGGC-CTGGTGATTAGGGGAAAGGGT-------CAAATGTGAGAGGATAAGAGCAAGTTATCGTCACATTTTCAAGTAAGTGGAGTGTATGA----------AAGGGAAAATCCCAGAAATGCA i saiBol1.JH378144 I 8 I 1 s otoGar3.GL873532 28848480 159 - 32117204 ATTAGG--AAGCTTAGTTCTAGCCCACTGTGGTCTCT--AGAGATGGAGTGTAAAGTGGTAATGGATAGAGCTGTT-CTGATGACCAAGG--AAGGAG-------CAAATGTGAGAGAATAACAG-------------CATTTTCAAGAAGGTAGTGGGAATGG----------GAAAGAAAATCCCAAAGATCCA i otoGar3.GL873532 I 8 I 1 s canFam3.chr25 42627903 160 + 51628933 A-TGGG--AGTCAGAGGACTAGACTACTGGGGTCTCT--AGAGCCAGGACTTAAAGTGGTAATAGCCAAGGCTGGC-CTGCAAATTAGGGGTAAGGAG-------CACATTTGGGAGAATCGCAG-------------CATTTTAAAGAAGGGGAAAAGGGAGG----------GAAGGAAGACGACAAACACGCA i canFam3.chr25 I 7 I 1 s ailMel1.GL192536.1 1078695 157 - 2169676 A-TGGG--AAGCAGAGCTCTAGACCACTGGGGTCTCT--AGAGCCAGGGCCTGAAGTGGTAATAGCCAAAGCTGGC-ATGCAGATTAGGAGTAAGGAG-------CAAATTTGGGAGAA---AAG-------------CATTTTAAAGAAGGCAATAGGGAAGG----------AAAGGAAAGTCCCAAACATCTA i ailMel1.GL192536.1 I 7 I 1 s equCab2.chr6 17886358 153 + 84719076 A-CGGG--AGGCAGAGCTCTAGACCACTGGGGTCTCT--AGAGATGGGGCTTGAAGTGGTAGTGGGCGGGGCTGGC-CTGCAGATTAGAGATAAGGAG-------CAAATTTGAGAGTATAACAG-------------CATTTTAAAGAAGGC-------AAGG----------GAAGGAAAATCCCAAACATCCA i equCab2.chr6 I 7 I 1 s xenTro3.GL173050 1017651 168 - 1070475 A-TGGGTAAAATTCACAACGATGCCAGCAATTACTCCACTAATACGGAA---GGAATCGTGGCAAGATGTGCAAACACCAAAAAGTAAGAGAAAGAAGAATCGATCAACACCGGAAAAACTCCAG-------------AA-ACCAACTGAGCCAATGGTCATGG----------AATGAAAGCACCCAGCCAGAGA i xenTro3.GL173050 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e felCat5.chrC1 212445573 191 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 132259 181 + 176633 I a score=20229.000000 s mm10.chr1_GL456221_random 144174 2 + 206961 TC s rn5.chr9 92388594 2 + 121549591 TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173522 2 - 10418462 CC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162587 2 + 243199373 TC i hg19.chr2 I 1 C 0 s panTro4.chr2B 235540625 2 + 247518478 TC i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119497323 2 + 131632457 TC i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122719197 2 + 135000294 TC i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3681275 2 + 6458163 TC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94090257 2 + 106825570 TC i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146770342 2 + 158406734 TC i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 20451 2 + 18451090 TC i saiBol1.JH378144 I 1 C 0 s micMur1.scaffold_3075 132440 2 + 176633 TT i micMur1.scaffold_3075 I 181 I 18 s otoGar3.GL873532 28848640 2 - 32117204 TC i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42628064 2 + 51628933 TC i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1078853 2 - 2169676 TC i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17886512 2 + 84719076 TC i equCab2.chr6 I 1 C 0 s xenTro3.GL173050 1017819 2 - 1070475 CC i xenTro3.GL173050 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e felCat5.chrC1 212445573 191 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I a score=37150.000000 s mm10.chr1_GL456221_random 144176 11 + 206961 CAGTTTT---CAGG-- s rn5.chr9 92388596 11 + 121549591 CCATGTG---CAGG-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173524 10 - 10418462 CAG-ATG---CAGG-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162589 11 + 243199373 CAAGGTG---CAGG-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540627 11 + 247518478 CAAGGTG---CAGG-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497325 11 + 131632457 CAAGGTG---CAGG-- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719199 11 + 135000294 CAAGGTG---CAGG-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681277 11 + 6458163 CAAGGTG---CAGG-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090259 11 + 106825570 CAAGTTG---CAGG-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770344 11 + 158406734 CAAGTTG---CAGG-- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20453 11 + 18451090 CAAGTTG---CAGG-- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848642 11 - 32117204 CAAAATA---TAGG-- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42628066 14 + 51628933 CAAGATAGCTCAGA-- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078855 11 - 2169676 CAAGGTG---TAGG-- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17886514 12 + 84719076 TAAGGTTG--CAGG-- i equCab2.chr6 C 0 C 0 s xenTro3.GL173050 1017821 11 - 1070475 --AATTC---TTTATT i xenTro3.GL173050 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e felCat5.chrC1 212445573 191 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 132442 18 + 176633 I a score=18444.000000 s mm10.chr1_GL456221_random 144187 3 + 206961 TAG- s rn5.chr9 92388607 3 + 121549591 TAG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173534 3 - 10418462 CAG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162600 3 + 243199373 TAG- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540638 3 + 247518478 GAG- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497336 3 + 131632457 TAG- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719210 3 + 135000294 TAG- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681288 3 + 6458163 TAG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090270 3 + 106825570 TAG- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770355 3 + 158406734 TAG- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20464 3 + 18451090 TAG- i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 132460 3 + 176633 CAG- i micMur1.scaffold_3075 I 18 C 0 s otoGar3.GL873532 28848653 3 - 32117204 CAG- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42628080 3 + 51628933 TGG- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078866 3 - 2169676 CAG- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17886526 3 + 84719076 CAG- i equCab2.chr6 C 0 C 0 s xenTro3.GL173050 1017832 3 - 1070475 -AGG i xenTro3.GL173050 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e felCat5.chrC1 212445573 191 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I a score=11827.000000 s mm10.chr1_GL456221_random 144190 4 + 206961 AACT s rn5.chr9 92388610 4 + 121549591 AACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173537 4 - 10418462 AGCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162603 4 + 243199373 AGTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540641 4 + 247518478 AGCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497339 4 + 131632457 AGCT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719213 4 + 135000294 AGCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681291 4 + 6458163 AGTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090273 4 + 106825570 AGCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770358 4 + 158406734 AGCT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20467 4 + 18451090 AGCT i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 132463 1 + 176633 A--- i micMur1.scaffold_3075 C 0 I 3383 s otoGar3.GL873532 28848656 1 - 32117204 A--- i otoGar3.GL873532 C 0 I 7 s felCat5.chrC1 212445764 4 + 221441202 AGCT i felCat5.chrC1 I 191 I 1472 s canFam3.chr25 42628083 4 + 51628933 TTTG i canFam3.chr25 C 0 I 10 s ailMel1.GL192536.1 1078869 4 - 2169676 AGCT i ailMel1.GL192536.1 C 0 I 9 s equCab2.chr6 17886529 4 + 84719076 AGCT i equCab2.chr6 C 0 I 21 s xenTro3.GL173050 1017835 4 - 1070475 AGAT i xenTro3.GL173050 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e dasNov3.JH581855 19235 3180 - 513109 I a score=13433.000000 s mm10.chr1_GL456221_random 144194 4 + 206961 CAGA s rn5.chr9 92388614 4 + 121549591 CAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173541 4 - 10418462 CAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162607 4 + 243199373 GAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540645 4 + 247518478 GAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497343 4 + 131632457 GAAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719217 4 + 135000294 GAAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681295 4 + 6458163 GAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090277 4 + 106825570 GAAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770362 4 + 158406734 AAAG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20471 4 + 18451090 AAAG i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42628097 4 + 51628933 CAGA i canFam3.chr25 I 10 C 0 s ailMel1.GL192536.1 1078882 4 - 2169676 CAGA i ailMel1.GL192536.1 I 9 C 0 s equCab2.chr6 17886554 4 + 84719076 CAGA i equCab2.chr6 I 21 C 0 s xenTro3.GL173050 1017839 4 - 1070475 CAAA i xenTro3.GL173050 C 0 C 0 e otoGar3.GL873532 28848657 7 - 32117204 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=10920.000000 s mm10.chr1_GL456221_random 144198 1 + 206961 A s rn5.chr9 92388618 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173545 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162611 1 + 243199373 A i hg19.chr2 C 0 I 14 s panTro4.chr2B 235540649 1 + 247518478 A i panTro4.chr2B C 0 I 14 s gorGor3.chr2B 119497347 1 + 131632457 A i gorGor3.chr2B C 0 I 14 s ponAbe2.chr2b 122719221 1 + 135000294 A i ponAbe2.chr2b C 0 I 14 s nomLeu2.GL397366 3681299 1 + 6458163 A i nomLeu2.GL397366 C 0 I 14 s rheMac3.chr12 94090281 1 + 106825570 A i rheMac3.chr12 C 0 I 28 s calJac3.chr6 146770366 1 + 158406734 A i calJac3.chr6 C 0 I 14 s saiBol1.JH378144 20475 1 + 18451090 A i saiBol1.JH378144 C 0 I 14 s otoGar3.GL873532 28848664 1 - 32117204 A i otoGar3.GL873532 I 7 I 1 s canFam3.chr25 42628101 1 + 51628933 A i canFam3.chr25 C 0 I 6 s ailMel1.GL192536.1 1078886 1 - 2169676 A i ailMel1.GL192536.1 C 0 I 6 s equCab2.chr6 17886558 1 + 84719076 A i equCab2.chr6 C 0 I 6 s xenTro3.GL173050 1017843 1 - 1070475 A i xenTro3.GL173050 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63205 546 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=1398.000000 s mm10.chr1_GL456221_random 144199 2 + 206961 --TG s rn5.chr9 92388619 2 + 121549591 --GG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4173546 2 - 10418462 --TG i speTri2.JH393335 C 0 I 595 s hg19.chr2 231162626 2 + 243199373 --AG i hg19.chr2 I 14 C 0 s panTro4.chr2B 235540664 2 + 247518478 --AG i panTro4.chr2B I 14 C 0 s gorGor3.chr2B 119497362 2 + 131632457 --AG i gorGor3.chr2B I 14 C 0 s ponAbe2.chr2b 122719236 2 + 135000294 --AG i ponAbe2.chr2b I 14 C 0 s nomLeu2.GL397366 3681314 2 + 6458163 --AG i nomLeu2.GL397366 I 14 C 0 s rheMac3.chr12 94090310 2 + 106825570 --GG i rheMac3.chr12 I 28 C 0 s papHam1.scaffold13267 63751 2 + 66950 --TG i papHam1.scaffold13267 I 546 C 0 s calJac3.chr6 146770381 2 + 158406734 --AG i calJac3.chr6 I 14 C 0 s saiBol1.JH378144 20490 2 + 18451090 --AG i saiBol1.JH378144 I 14 C 0 s otoGar3.GL873532 28848666 2 - 32117204 --GG i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42628108 2 + 51628933 --GG i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1078893 2 - 2169676 --GG i ailMel1.GL192536.1 I 6 C 0 s equCab2.chr6 17886565 2 + 84719076 --AG i equCab2.chr6 I 6 C 0 s choHof1.scaffold_21362 14409 2 + 17772 --TG i choHof1.scaffold_21362 N 0 N 0 s xenTro3.GL173050 1017844 2 - 1070475 TC-- i xenTro3.GL173050 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=12776.000000 s mm10.chr1_GL456221_random 144201 3 + 206961 C----CA s rn5.chr9 92388621 3 + 121549591 C----CA i rn5.chr9 C 0 C 0 s hg19.chr2 231162628 3 + 243199373 C----CA i hg19.chr2 C 0 I 15 s panTro4.chr2B 235540666 3 + 247518478 C----CA i panTro4.chr2B C 0 I 15 s gorGor3.chr2B 119497364 3 + 131632457 C----GA i gorGor3.chr2B C 0 I 15 s ponAbe2.chr2b 122719238 3 + 135000294 C----CA i ponAbe2.chr2b C 0 I 15 s nomLeu2.GL397366 3681316 3 + 6458163 C----CA i nomLeu2.GL397366 C 0 I 15 s rheMac3.chr12 94090312 3 + 106825570 C----CA i rheMac3.chr12 C 0 I 1 s papHam1.scaffold13267 63753 3 + 66950 C----CA i papHam1.scaffold13267 C 0 I 6 s calJac3.chr6 146770383 3 + 158406734 C----CA i calJac3.chr6 C 0 I 15 s saiBol1.JH378144 20492 3 + 18451090 C----CA i saiBol1.JH378144 C 0 I 15 s otoGar3.GL873532 28848668 3 - 32117204 C----CT i otoGar3.GL873532 C 0 I 18 s canFam3.chr25 42628110 7 + 51628933 CTGGGTG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078895 3 - 2169676 C----TC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17886567 3 + 84719076 C----CA i equCab2.chr6 C 0 C 0 s xenTro3.GL173050 1017846 3 - 1070475 C----CA i xenTro3.GL173050 C 0 N 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4173548 595 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=20245.000000 s mm10.chr1_GL456221_random 144204 11 + 206961 -GGCCTCCTGT-G s rn5.chr9 92388624 11 + 121549591 -GACCTCCTGT-G i rn5.chr9 C 0 C 0 s hg19.chr2 231162646 10 + 243199373 -GCCAAGCTAT-- i hg19.chr2 I 15 C 0 s panTro4.chr2B 235540684 10 + 247518478 -GCCAAGCTAT-- i panTro4.chr2B I 15 C 0 s gorGor3.chr2B 119497382 10 + 131632457 -GCCAAGCTAT-- i gorGor3.chr2B I 15 C 0 s ponAbe2.chr2b 122719256 10 + 135000294 -GCCAAGCTAT-- i ponAbe2.chr2b I 15 C 0 s nomLeu2.GL397366 3681334 10 + 6458163 -GCCAAGCTAT-- i nomLeu2.GL397366 I 15 C 0 s rheMac3.chr12 94090316 10 + 106825570 -GTTGGGCTAT-- i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146770401 10 + 158406734 -GCCAAGCTAT-- i calJac3.chr6 I 15 C 0 s saiBol1.JH378144 20510 10 + 18451090 -CCCAAGCTAT-- i saiBol1.JH378144 I 15 C 0 s otoGar3.GL873532 28848689 11 - 32117204 -AACAAGCCAGG- i otoGar3.GL873532 I 18 I 2 s canFam3.chr25 42628117 11 + 51628933 GGCTAAGCTGG-- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078898 11 - 2169676 GGCCAAGCTGA-- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17886570 11 + 84719076 GGCCAAGCTGG-- i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4173548 595 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63756 6 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=27136.000000 s mm10.chr1_GL456221_random 144215 8 + 206961 TAAGTTTT s rn5.chr9 92388635 8 + 121549591 AAAATTCT i rn5.chr9 C 0 C 0 s hg19.chr2 231162656 8 + 243199373 TATGTTCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540694 8 + 247518478 TATGTTCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497392 8 + 131632457 TATGTTCA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719266 8 + 135000294 TATGTTTA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681344 8 + 6458163 TATGTTCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090326 8 + 106825570 TATGTTCA i rheMac3.chr12 C 0 C 0 s papHam1.scaffold13267 63762 8 + 66950 TATGTTTA i papHam1.scaffold13267 I 6 I 3138 s calJac3.chr6 146770411 8 + 158406734 TACGTTCA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20520 8 + 18451090 TATGTTCA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848702 6 - 32117204 AGTATT-- i otoGar3.GL873532 I 2 I 2 s canFam3.chr25 42628128 8 + 51628933 CAAGTCCA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078909 8 - 2169676 TGAGTTTA i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17886581 8 + 84719076 TGAATTCA i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4173548 595 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=68663.000000 s mm10.chr1_GL456221_random 144223 14 + 206961 AGGTCTGGG-CCTCT s rn5.chr9 92388643 14 + 121549591 AGGTCTGGA-CCTCT i rn5.chr9 C 0 C 0 s hg19.chr2 231162664 15 + 243199373 AGGTGTTGATCCTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540702 15 + 247518478 AGGTGTTGATCCTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497400 15 + 131632457 AGGTGTTGATCCTGT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719274 15 + 135000294 AGGTGTGGAGCCTGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681352 15 + 6458163 AGGTGTTGATCCTGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090334 15 + 106825570 AGGTGTGGATCCTGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770419 15 + 158406734 AGGTGCGGAGCCTGT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20528 15 + 18451090 AGGTGTGGAGCCTGT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848710 15 - 32117204 AGGTGTGGGCTCTGA i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42628136 14 + 51628933 -GGGGTGGACCCTGG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078918 15 - 2169676 GGGGGTGGACCCTAT i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17886589 15 + 84719076 AGGTGTGGACCCTGT i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4173548 595 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 19235 3180 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-493.000000 s mm10.chr1_GL456221_random 144237 1 + 206961 -C s rn5.chr9 92388657 1 + 121549591 -C i rn5.chr9 C 0 C 0 s hg19.chr2 231162679 1 + 243199373 -C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540717 1 + 247518478 -C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497415 1 + 131632457 -C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719289 1 + 135000294 -C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681367 1 + 6458163 -C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090349 1 + 106825570 -C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770434 1 + 158406734 -C i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20543 1 + 18451090 -C i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848725 1 - 32117204 -C i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42628150 1 + 51628933 -C i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078933 1 - 2169676 -T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17886604 1 + 84719076 -T i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 22415 1 - 513109 A- i dasNov3.JH581855 I 3180 I 6360 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4173548 595 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=102367.000000 s mm10.chr1_GL456221_random 144238 43 + 206961 CTT-GTCCTGCAGAAAGTTGCCTACAGACTGAA-------------------------TGGGTTTTCAC s rn5.chr9 92388658 43 + 121549591 TTT-GTCCCACAGAAAGTTGCCTACAGAGTGAG-------------------------TAGGTTCTCAT i rn5.chr9 C 0 C 0 s hg19.chr2 231162680 44 + 243199373 ATTAGCCCTGTAAAGGAGTACATACAAGGCAAG-------------------------GGGTCCTTTAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540718 44 + 247518478 ATTAGCCCTGTAAAGGAGTACATACAAGGCAAA-------------------------GGGTCCTTTAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497416 44 + 131632457 ATTAGCCCTGTAAAGGAGTACATACAAGGCAAG-------------------------GGGTCCTTTAC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719290 44 + 135000294 ATTAGTCCTGTAAAGGAGTACATACAGGGCAAG-------------------------AGGTCCTTTAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681368 44 + 6458163 ATTAGCCCTGTAAAGAAGTACATACAGGGCAAG-------------------------GGGTCCTTTAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090350 44 + 106825570 ATTAGCCCTGTAAAGGAGTACATACAGGGTGAG-------------------------GGGTCTTTTAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770435 19 + 158406734 ATTAGTCCTATAAAGGAAT-------------------------------------------------- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20544 19 + 18451090 ATTAGTCCAGTGAAGGAAT-------------------------------------------------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848726 45 - 32117204 ATTAGTTCTGAAGAGATATGCATGCAGAGCACGT------------------------GGATATTTTAT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42628151 69 + 51628933 ATGAGTCCTGCTGAGAAATGTACACGGGGCAGGTGGAGACTGCAGAGAAGTAGCTGCAGGGTCCTTTGT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078934 45 - 2169676 GTGAATCCTGCAGAGAAATGCATGCAGGGCAAGT------------------------GGGCCTTTTAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17886605 45 + 84719076 GTGAGTCCTGCAGAGAAATGTATGCAGGGCAAGT------------------------GGGTCCTTTAT i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4173548 595 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=384121.000000 s mm10.chr1_GL456221_random 144281 77 + 206961 AGAAACCCTGGGACCAGTCTGAAGAGAGCCATGGGGGTTCACTGCTGATCGGAAGCAAAACCATCA-CACTGAGCAAA s rn5.chr9 92388701 77 + 121549591 AGAAACCCTGGGACCAGTCTGAAGAGAGCCACAGCCAGCCACAGCTGATTGGAGGCAAAACCATCA-CACCGAGCAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4174143 78 - 10418462 agaaagaCTGTAGCCAGTCTCAAGGCAGCCATTAGGAGGCTGAGATGGCTAAGACTGAAACCATCACCACTTAGCAAA i speTri2.JH393335 I 595 C 0 s hg19.chr2 231162724 78 + 243199373 AGAGCTCATTTGGATGGTTTCAGGGAAGCCATTAGGGTGCTGAGCTGGTTAGGACTGAAACCATCACGACCTAGCAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540762 78 + 247518478 AGAGCTCGTTTGGATGGTTTCAGGGAAGCCATTAGGGCGCTCAGCTGGTTAGGACTGAAACCATCACGACCTAGCAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497460 78 + 131632457 AGAGCTCGTTTGGATGGTTTCAGGGAAGCCATTAGGGTGCTGAGCTGGTTAGGACTGAAACCATCACGACCTAGCAAA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719334 78 + 135000294 AGAGCCCCTATCACCAGTCTCAGGGAAGCCATTAGGGTGCTGAGCTGGTTAGGACTGAAACCATCACGACCTAGCAAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681412 78 + 6458163 AGAGCTCATTTGGATGGTCTCAGGGGAACCATTAGGGTGCTGAGCTGGTTAGGACTGAAACCATCACGACCTAGCAAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090394 78 + 106825570 AGAGCTCCTATGGATGGTCTCAGGTAAGCCATTAGCATGCTGAGCTGGTTAGGACTGAAACCAGCATGACCTAGCAAA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770454 62 + 158406734 ----------------GACTCAGGGAAACCGTTAGGGTGCTGAGCTGGTTAGGACTGAAACCATCATGACCTAGCAAA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20563 62 + 18451090 ----------------GGCTCAGGGAAGCGATTAGGGTGCTGAGCTGGTTAGGACTGAAACCATCATGACCTAGCAAA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848771 78 - 32117204 GAAGCCCCTATGGCCAGTCTTGAGGGAGCCATCAGAGTGCTGAGCTGGTTAGGACTGAAACCATCATGCTTGAGCAAA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42628220 68 + 51628933 GGAGACCCTGGAGTCTGTCTCAAGGGAGCCACCAGGGTACTGAGCTGGCTAAGACTGAAGC----------TAGCAAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1078979 78 - 2169676 GGAGGCCATGTATCTGGTCTTGAGGGAGCCGTCAGGGTGCTAAGCTGGTGAGGGCTGAAACGATCACCACGCAGCCCA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17886650 77 + 84719076 GGAGCCCCTGTAGCC-ATCTGGAGGGAGCCATCAGGGTGCTGAGCTGGTTAGAACTGAAACCATCACCACTTATCAAA i equCab2.chr6 C 0 I 73135 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=17826.000000 s mm10.chr1_GL456221_random 144358 4 + 206961 TCAC s rn5.chr9 92388778 4 + 121549591 TCAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4174221 4 - 10418462 TCAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162802 4 + 243199373 TCCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540840 4 + 247518478 TCCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497538 4 + 131632457 TCCT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719412 4 + 135000294 TCCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681490 4 + 6458163 TCCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090472 4 + 106825570 TCCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770516 4 + 158406734 TCAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20625 4 + 18451090 TCAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848849 4 - 32117204 CCAT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42628288 4 + 51628933 TCAC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1079057 4 - 2169676 TCAC i ailMel1.GL192536.1 C 0 I 1422 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e equCab2.chr6 17886727 73135 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=227399.000000 s mm10.chr1_GL456221_random 144362 66 + 206961 TG----TTTTTTCTGTGTCCGCTTGGCTGGTGTTTGGGCATAGGCAAACCATCCTAACACCTAAGGTCCT s rn5.chr9 92388782 56 + 121549591 CA--------------GTCAGCTTGGCTGGTGTTCGGGCGTAGGTAAACCATCCTAATACATAAGGCCCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4174225 65 - 10418462 AG----TTTATTCAA-ACTTGTTTGGCTGGTGCTTAATAATGTACAAACCATTCTGATCCCATGGGTCCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162806 68 + 243199373 GAGGCATTTTAACTC-AACTGCTTATCTGGTGCTCAGTACTATGCAAACT-TTCTGATGCCACAGGCCCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540844 68 + 247518478 GAGGCATTTTAACTC-AACTGCTTATCTGGTACTCAGTACCATGCAGACT-TTCTGATGCCACAGGCCCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497542 68 + 131632457 GAGGCATTTTAACTC-AACTGCTTATCTGGTGCTCAGTACTATGCAAACT-TTCTGATGCCACTGGCCCC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719416 68 + 135000294 GAGGCATTTTAACTT-AACTGCTTATCTGGTGTTCAGTACTATGCAAACT-TTCTGATGCCATGGGCCCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681494 68 + 6458163 GAGGCATTTTAACTC-AACTGCTTATCTGGTGCTCAGTACTATGCAAACT-TTCTGATGCCATGGGTCCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090476 67 + 106825570 GAGGCATTTTAACTC-AACTGCTTATCTGGTGCTCAGTACTAAGCAACCC-TTCTGATTCCAT-GGCCCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770520 68 + 158406734 GAGGCATTTTTACTC-AACTGCTTATCTGGTGCTCAGTAATATGCACACC-TTCTGATCCCATGGGCCCC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20629 68 + 18451090 GAGGCGTTTTTACTT-AGCTGCTTATCTGGTGCTCAGTGCTATGCAAACC-TTCCGATCCCATGGGCCCC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848853 69 - 32117204 GGGGAATTTTTACTCTAGCTGCTTGGCTGGTGCTTGGAAATGTGCAAACC-TTCTGATCTTTTAGGTCTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42628292 69 + 51628933 -AGACATTTTTACTCAAATTGCTTGGCTAGAGCTCGATTATGTGCAGACCCTTCTGATCTCATAGGCCCT i canFam3.chr25 C 0 I 2339 e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e equCab2.chr6 17886727 73135 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=71630.000000 s mm10.chr1_GL456221_random 144428 18 + 206961 GTCCATTCTCTGTTTGCC s rn5.chr9 92388838 18 + 121549591 GTCCATCCTCTGCTCACC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4174290 18 - 10418462 GTTTGCCATATGGCTTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162874 18 + 243199373 ATCCATTCTCTGCTTGCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540912 18 + 247518478 ATCCATTCTCTGCTTGCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497610 18 + 131632457 ATCCATTCTCTGCTTGCT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719484 18 + 135000294 ATCCATTCTCTGCTTGCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681562 18 + 6458163 ATTCATTCTCTGCTTGCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090543 18 + 106825570 ATCCATTCTCTGCTTGCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770588 18 + 158406734 ATCCATTCTCTGCTTGCT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20697 18 + 18451090 ATCTATTCTCTATTTGCT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28848922 18 - 32117204 ATCTTTTCTGTGCCTGCC i otoGar3.GL873532 C 0 I 8816 e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e equCab2.chr6 17886727 73135 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=1153.000000 s mm10.chr1_GL456221_random 144446 1 + 206961 A s rn5.chr9 92388856 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4174308 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231162892 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540930 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497628 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719502 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681580 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090561 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770606 1 + 158406734 A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 20715 1 + 18451090 A i saiBol1.JH378144 C 0 I 3818 e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e equCab2.chr6 17886727 73135 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=28926.000000 s mm10.chr1_GL456221_random 144447 20 + 206961 GTATCCTTGGACTTTGTGGA s rn5.chr9 92388857 20 + 121549591 GTATCCTTGTACTTTATGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4174309 17 - 10418462 G---CTTTGGGGTCTGCTGA i speTri2.JH393335 C 0 I 1077 s hg19.chr2 231162893 19 + 243199373 -TATGACTGCCtgctttgga i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540931 19 + 247518478 -TATGACTGCCtgctttggg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497629 19 + 131632457 -TATGACTGCCtgctttggg i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719503 19 + 135000294 -TATGACTGCCtgctttggg i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681581 19 + 6458163 -TATCACTACCtgctttggg i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090562 19 + 106825570 -TATGACTGCCtgttttggg i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770607 19 + 158406734 -TATGGCTGCCTGCTTTGGG i calJac3.chr6 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e equCab2.chr6 17886727 73135 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=16372.000000 s mm10.chr1_GL456221_random 144467 7 + 206961 TCTTGCT s rn5.chr9 92388877 7 + 121549591 GCTTGCT i rn5.chr9 C 0 C 0 s hg19.chr2 231162912 7 + 243199373 ttctgcc i hg19.chr2 C 0 C 0 s panTro4.chr2B 235540950 7 + 247518478 ttctgcc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119497648 7 + 131632457 ttctgcc i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122719522 7 + 135000294 ttctgct i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3681600 7 + 6458163 ttctgcc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94090581 7 + 106825570 ttctgcc i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146770626 7 + 158406734 TTCTGCT i calJac3.chr6 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e equCab2.chr6 17886727 73135 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=5113.000000 s mm10.chr1_GL456221_random 144474 4 + 206961 AGAA- s rn5.chr9 92388884 4 + 121549591 AGAG- i rn5.chr9 C 0 C 0 s hg19.chr2 231162919 4 + 243199373 aaaa- i hg19.chr2 C 0 I 11005 s panTro4.chr2B 235540957 4 + 247518478 aaaa- i panTro4.chr2B C 0 I 11423 s gorGor3.chr2B 119497655 4 + 131632457 aaaa- i gorGor3.chr2B C 0 N 0 s ponAbe2.chr2b 122719529 4 + 135000294 gaaa- i ponAbe2.chr2b C 0 I 1858 s nomLeu2.GL397366 3681607 4 + 6458163 gaaa- i nomLeu2.GL397366 C 0 I 11349 s rheMac3.chr12 94090588 4 + 106825570 aaaa- i rheMac3.chr12 C 0 I 16719 s calJac3.chr6 146770633 4 + 158406734 GAAA- i calJac3.chr6 C 0 I 6935 s sarHar1.chr4_GL856786_random 2033663 4 + 4048845 -AGAT i sarHar1.chr4_GL856786_random N 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e equCab2.chr6 17886727 73135 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-820.000000 s mm10.chr1_GL456221_random 144478 1 + 206961 -C s rn5.chr9 92388888 1 + 121549591 -C i rn5.chr9 C 0 I 116 s sarHar1.chr4_GL856786_random 2033667 1 + 4048845 A- i sarHar1.chr4_GL856786_random C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=7363.000000 s mm10.chr1_GL456221_random 144479 75 + 206961 AAAGAAACATTTTAAATAA-----GCTTAAAAGTTAGTGTTCAGAAGACAAAGAGCTGGGTGCATTTGGGAAGTGAGAGG s rn5.chr9 92389005 75 + 121549591 AAAGAAACATTTTAAAGAA-----GCTTACAAGTTAGTGGTCAGAAGACAAAGAACTGGGTGGATTTGAGAAATGAGAGG i rn5.chr9 I 116 C 0 s sarHar1.chr4_GL856786_random 2033668 80 + 4048845 AAAGAACCAATAAGAGGAAATCATGTTTTGGATTTAGTTCTCACCAAAAAAGGAGAAGGTGACTTTTGGGATGGAAAGGA i sarHar1.chr4_GL856786_random C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=23.000000 s mm10.chr1_GL456221_random 144554 5 + 206961 TTTGA s rn5.chr9 92389080 5 + 121549591 ACAGA i rn5.chr9 C 0 C 0 s sarHar1.chr4_GL856786_random 2033748 5 + 4048845 TGAGA i sarHar1.chr4_GL856786_random C 0 C 0 s latCha1.JH126729 157317 5 + 2143125 tttaa i latCha1.JH126729 N 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-6473.000000 s mm10.chr1_GL456221_random 144559 91 + 206961 ---AGCAGGATAGGTTTGTCATGTATGGAGCATGTTATA-----AATGGTAGAGACAAAGAAAAGATCAG---GGTACAGTAGGA-ACATGGCCCAGAGTTTA s rn5.chr9 92389085 94 + 121549591 ---AGCAGGATAGGTTTGTGGCACATGGAGCGCGTTATATAG--AATGGTAGAGACAAGGAAAAGATCAG---GGAACAGTAGGA-ACATGGTTCAGAGTTTA i rn5.chr9 C 0 C 0 s sarHar1.chr4_GL856786_random 2033753 80 + 4048845 ---AACTGGAATGG--------AAGTAGTGTTCTTTGCTTAG--AATTTTTGATAATTGAAAAA----------GTATAGTCTAACATATACTCAAGATTTTA i sarHar1.chr4_GL856786_random C 0 C 0 s anoCar2.chr4 16855429 91 - 156502444 ---AACATAAGAGGGTGGTCCTG-ATGGCAAAAGTTCTA-----AATGAGAAACACACAAACTAGAAGAGGCtggagcagtttgt-ttttg--catgagccta i anoCar2.chr4 N 0 I 1 s latCha1.JH126729 157322 99 + 2143125 agtcactTAAGGCATTCATGCACAGTAGGCTCATTTCCAGAGGTAGTTATTTGAAGAAGGAGAAAATCAG---GGTAACAAAGGA-GCTGGAGACAGAGATTA i latCha1.JH126729 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26320355 1268 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=205.000000 s mm10.chr1_GL456221_random 144650 1 + 206961 G s rn5.chr9 92389179 1 + 121549591 A i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26321623 1 + 30916457 G i myoLuc2.GL429770 I 1268 I 21 s sarHar1.chr4_GL856786_random 2033833 1 + 4048845 G i sarHar1.chr4_GL856786_random C 0 I 1 s latCha1.JH126729 157421 1 + 2143125 A i latCha1.JH126729 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e anoCar2.chr4 16855520 1 - 156502444 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-2164.000000 s mm10.chr1_GL456221_random 144651 20 + 206961 ------CAGGATGAGTTTGAGCTGCA s rn5.chr9 92389180 20 + 121549591 ------CAGGATGAGTTTGAGCCGCA i rn5.chr9 C 0 C 0 s sarHar1.chr4_GL856786_random 2033835 19 + 4048845 ------GAGGGCAGATTTCAAA-GCA i sarHar1.chr4_GL856786_random I 1 C 0 s anoCar2.chr4 16855521 19 - 156502444 ------tgggaagagcaagagt-tca i anoCar2.chr4 I 1 I 14 s latCha1.JH126729 157422 18 + 2143125 GAGGTACGAGGAGATTTT-------- i latCha1.JH126729 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26321624 21 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-2095.000000 s mm10.chr1_GL456221_random 144671 1 + 206961 -T s rn5.chr9 92389200 1 + 121549591 -C i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26321645 1 + 30916457 -C i myoLuc2.GL429770 I 21 I 206 s sarHar1.chr4_GL856786_random 2033854 1 + 4048845 -T i sarHar1.chr4_GL856786_random C 0 C 0 s anoCar2.chr4 16855554 1 - 156502444 -c i anoCar2.chr4 I 14 C 0 s latCha1.JH126729 157440 1 + 2143125 G- i latCha1.JH126729 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=763.000000 s mm10.chr1_GL456221_random 144672 7 + 206961 -CCAGGGA s rn5.chr9 92389201 7 + 121549591 -CTAGGGA i rn5.chr9 C 0 C 0 s sarHar1.chr4_GL856786_random 2033855 7 + 4048845 -GCAGAGA i sarHar1.chr4_GL856786_random C 0 N 0 s anoCar2.chr4 16855555 7 - 156502444 -ccactGA i anoCar2.chr4 C 0 I 3 s latCha1.JH126729 157441 7 + 2143125 TCTAGGG- i latCha1.JH126729 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26321646 206 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-1901.000000 s mm10.chr1_GL456221_random 144679 10 + 206961 GCCCTAGAAG-- s rn5.chr9 92389208 10 + 121549591 GCCCTTGAGG-- i rn5.chr9 C 0 C 0 s anoCar2.chr4 16855565 7 - 156502444 AATTTGG----- i anoCar2.chr4 I 3 C 0 s latCha1.JH126729 157448 10 + 2143125 --CTCCGACGGA i latCha1.JH126729 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26321646 206 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-4135.000000 s mm10.chr1_GL456221_random 144689 26 + 206961 AGACATGG----------CTGGGCATTAA-AACACAA s rn5.chr9 92389218 26 + 121549591 GGACATGG----------CTGAGCACTGG-GACATGA i rn5.chr9 C 0 C 0 s sarHar1.chr2_GL841408_random 1053149 29 - 1314191 AGATGAGGT--------TCTGGGTGTTAACAatatca i sarHar1.chr2_GL841408_random N 0 C 0 s anoCar2.chr4 16855572 32 - 156502444 GGGCAAGCTACCTA--CTTTGGCAATTTG-AACCC-- i anoCar2.chr4 C 0 C 0 s latCha1.JH126729 157458 36 + 2143125 TGACATGACTCAAACCCTTGAGTcattaa-aatataa i latCha1.JH126729 C 0 N 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26321646 206 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=2336.000000 s mm10.chr1_GL456221_random 144715 115 + 206961 GGAGCTGAGGAGAGATGAGACACCATGAAGCTGAGGA-CACAGGTGGAAA-CTGCAGCAGGAGAGTGACTCTGATCATCTGGACAGACTGTAGATAAGGATGGAAAACTGGGGAATT s rn5.chr9 92389244 114 + 121549591 GGAGCTGAGGAGAGTTGAGACACCATGAGGCTGAGGA-CACGGGTGGAAACCTGCAGCTG--GAATGACTGTGATCATCTGGAGAGACTGTAGCTGCGGATGGAAACCTGAGGAATT i rn5.chr9 C 0 C 0 s sarHar1.chr2_GL841408_random 1053178 104 - 1314191 gaagataaaaatag-------gcCATTTAATAAATGAGCAAAGATAGAATCCAGAGAGAG--TAGCAACAGGTTAGATCTGAGGG----GTAAAAGATAATAGCAAATCAAGGACCC i sarHar1.chr2_GL841408_random C 0 C 0 s anoCar2.chr4 16855604 106 - 156502444 --AGTTGACTGCAACTGA------AGGAAGCTGAGGA-CAAAGTGGGGAA-CTGGGTGAGGACAGAGAAGTTGAAACTTTttgaaagcagctggaaaagtgggaaaatggaggatt- i anoCar2.chr4 C 0 N 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26321646 206 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=4731.000000 s mm10.chr1_GL456221_random 144830 30 + 206961 CCATCCTTTGCATGTGGAGGAAGAGAAGGA s rn5.chr9 92389358 30 + 121549591 CCATCCTTTGCATGTTAAGGAAGAGAAGGA i rn5.chr9 C 0 C 0 s sarHar1.chr2_GL841408_random 1053282 30 - 1314191 CCATCTTTCAAGTCTGGATGATTAGAAGGA i sarHar1.chr2_GL841408_random C 0 N 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26321646 206 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=1323.000000 s mm10.chr1_GL456221_random 144860 16 + 206961 CCAGGGAAGGAAAGTG s rn5.chr9 92389388 16 + 121549591 CCTGGGAAGGAAAGTG i rn5.chr9 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26321646 206 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=38.000000 s mm10.chr1_GL456221_random 144876 1 + 206961 G s rn5.chr9 92389404 1 + 121549591 G i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26321852 1 + 30916457 A i myoLuc2.GL429770 I 206 I 119 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=6119.000000 s mm10.chr1_GL456221_random 144877 117 + 206961 TCCAGCAGTCAGGTGATACAGCAAACCAACAAGACTGATGCAGAAGGACCAACTTCTCCTGAGGGCAGAGATGGCCCTGGTCACAGAATGGTTGGCCCTGTCACCTTGGCTACTTCC s rn5.chr9 92389405 104 + 121549591 TCCAGCAG--------TAGAGCAAACCACCGAGAATGATGCAGAAGG----ACTTCTTCTGAGGGCAGAAATTG-CCTGGGCTTAGAATGGTTGGCACTATCACCTTGGCTACCTCC i rn5.chr9 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26321853 119 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-1553.000000 s mm10.chr1_GL456221_random 144994 11 + 206961 CTTGTCCCACT---- s rn5.chr9 92389509 8 + 121549591 CTT---CTACC---- i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26321972 11 + 30916457 ----CGCTCCTCAAT i myoLuc2.GL429770 I 119 I 21 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-31.000000 s mm10.chr1_GL456221_random 145005 1 + 206961 C s rn5.chr9 92389517 1 + 121549591 T i rn5.chr9 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26321983 21 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=1064.000000 s mm10.chr1_GL456221_random 145006 9 + 206961 ACTCACCCA s rn5.chr9 92389518 9 + 121549591 ACTCACCCT i rn5.chr9 C 0 C 0 s xenTro3.GL172836 571266 9 + 1874013 ACCAACCAA i xenTro3.GL172836 N 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26321983 21 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=594.000000 s mm10.chr1_GL456221_random 145015 3 + 206961 GTG s rn5.chr9 92389527 3 + 121549591 GTG i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26322004 3 + 30916457 GCA i myoLuc2.GL429770 I 21 I 405 s xenTro3.GL172836 571275 3 + 1874013 ATG i xenTro3.GL172836 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=8141.000000 s mm10.chr1_GL456221_random 145018 314 + 206961 --------GTGGCCCAGACCTCAAGCCACGCTTGTATTTGTCCCTTAGACAATCACAGGAAAGTAG--AAAATTT--CCAACAGCCCATGGACTACGTAGAGGTGTTTCTTCC--CCTCTTTTACACC-----------ATATCTTCTTCCTTCTCTTCCTC----TCTTCTTTCCCTGATAtttttgagatagggtctcatgtaga-------ccaaaataaccacaaacttactatgtagccaagggt------------cctgaccttcctgtcttgactttcctactatg--tgcca--ccatacctgAAT-TGTGATTTTTCTGT-GTTCCTATAGAACCACCTCTCATTTCTCAA------ACTGTCA s rn5.chr9 92389530 344 + 121549591 --------GTGGCCCAGTCCTCAAGCTGCAATAATGTTTGTACCTCAGACAGTCACAAGAAAGTAGAAAAAATTC--CCAACAGTTCATGGACTACATAAAAGGAGTGCCCCCCACACTTTTTACATCTTTTT-----TCTTTCTTTTCCCCCCTCTTCCTC----TCTTCCTTCCTTGAGAGttttgagatagggtctcatgtaga-------cc-aactgacctcaaattcactatgtagccaaggatgaacttg-aacccctgatcctccggtctcgacgttctagttgagattcccagtctgtgccaGTTT-TGAAATTTTTCTGT-GTTCCTATTGAGGCACCTCTCATTTCTCAAATTGTCACTGTCA i rn5.chr9 C 0 C 0 s xenTro3.GL172836 571278 316 + 1874013 GAACTGCAGTGAACCTACCT---AGCTGTGCATGTTCTTCAACATTTTACAGGCAATAAACAAAAATAAAAGTTTGAGTATTACACTATTTACTATGTAAAGGTG-------------TTTTTAAATGTTGGTAAAGAAACAGCTTTTTCATTCTCATCTGCATCTTTTTGTTTCTCTGCTGGTGTTTATA------CGCAGGTGGAGAAAAAGCCACATTAGCCTTACATTT-------------GAATAAACATGTTACACCTGACCTCTCACTTTAA----TCTAGCTA-----------ATATACTTAAATATGAGATAGTTATGTAGTTGCCAAT--ATTTTCTTTTATATCTAAA------GATGTTA i xenTro3.GL172836 C 0 N 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322007 405 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=8024.000000 s mm10.chr1_GL456221_random 145332 120 + 206961 CCATTCTCCTTGAAGTTGGGACCAGGAATGCATGTGTTCCTCTCCACATGTTATTCTGATTCTTCCTGGTTCCTGTGTTAACAGTAGTCATAGG-AAACCCCAGCAACATACCAAGGGAGG s rn5.chr9 92389874 120 + 121549591 CCATTCTCCTTGAACTTGGGACTAGGAATGTGTGTTTTCCGGTACACATGTTATTCTGATACTTCTTGGTTCCTGTGTTAACAGTGATCGTAGGAAAACCCCAGCAACATG-CAAGGGAGA i rn5.chr9 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322007 405 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-485.000000 s mm10.chr1_GL456221_random 145452 7 + 206961 TTGTGAG----- s rn5.chr9 92389994 7 + 121549591 TTATGAG----- i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26322412 7 + 30916457 -----agggcag i myoLuc2.GL429770 I 405 I 1019 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=11816.000000 s mm10.chr1_GL456221_random 145459 266 + 206961 GAACTCATTTGAATACCTTTCTGAATGGCAGAAACAAAACCCACTAAAACTCTCCCATGAGGACAGA--------------------GTGGGGCAGGAAACTAATAGACCATCCTAGGCTCTCTCAACTATTTATG---GTTTTtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtTTCATTGT-------TGTTGTTGTTACAAGGCTTCAAGCTGTCTTCAAAACCATGACTCTACTGCCTTAATCTCCTCAGTGGAGTTCCTTAATCCGTGTACCCACCCCAT-------ttctg s rn5.chr9 92390001 298 + 121549591 GAACTCATTTGAATACCTTTCTGAATGACAGGAAACAGACACCC----ACTGACCAAGGATCATAGGTGTTATTAGGGGCTTCCCATGGGGGGCAGAGAACTAGTAGACCATCCTAGGC-CTCTCAGCTACTTATGtctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctGTTGTTGTTACAAGGCTTCAAGCTGTCTTCAAACCCATGATTCTATTGCCTTAATCTCCTCAGTGGGATACCTTAATCCATATACCCACCccatttaggccttctg i rn5.chr9 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17886727 73135 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=26479.000000 s mm10.chr1_GL456221_random 145725 251 + 206961 acttttccagatgtttaggcagtatataacattgagccttaattttggtgttatgccaGGCTTCCCACATGCAGCAGC-GGTTTGGTCATAGTCCACTTCTGCTGCCCCTTGAACACACATGTATTTGTA--------------------------------------------------CATTGGTTTTGATAAATAGATCTTACTCTATAGTAACAAAGAACAAATAATGTCAAAGATTAGC-TTTTCTAGATAGAAA-TAACTTTGACTCCAGGCAGTCTGTGTTAGTCTTGGTAAGATGT s rn5.chr9 92390299 295 + 121549591 acttttccagctatttaggcagca-ataacattgagccttaattttGCTGTTATGCCAGGCTTCCCCCACACAGCA----GTTCACTCATAGTTCACTT---CTGGCCCTTGAACACACATATATTTGTATACCATACAATGGATGTGTATTGGTCTCTTTATAATTGCTCTATAAAGTCTATTGGTTTTGATAAGTAGATCTTAC-CTATAGTAACAAAGAAAAAACAATGTCAAGGATTAGCTTTTTCTAGATGAAAACTAACTTTGACTCTAGGCAGTCTGTACTAGTCTTGGCAAAAAGT i rn5.chr9 C 0 C 0 s equCab2.chr6 17959862 299 + 84719076 attttaccaaatgtcaaggtagcacataatattgagtttaattttggtccttattccaTCTTTTCCTTGCATGACAAAGGGCTCAGTCACAGACCAGTT---CTTTGTCATGAATACACATGTATTTGTGTATAATAGAGTATATCTGTACTGGTCTCTTTATATTTGATCTACAAATTCTCTTGGTTTTAATGATTAGGAGTTATTCTACAAGATTTGGATGCAAATACTGTCAAGTTTTATC-TTCTCTAAATGAAAT-TAAACCTGGTTAAAGTCCTCACATATTGAGACTGGTGAGAAAT i equCab2.chr6 I 73135 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=3093.000000 s mm10.chr1_GL456221_random 145976 51 + 206961 TCAAACCTCTGTTGACTTGAGGGAT----TCTTTTCCCTTTCATAGGACAAAG-TA s rn5.chr9 92390594 49 + 121549591 TC-AACCTCTTTTGACTTGGGGGAT------TTTTCCCTTTCATAGAACGAAGTTC i rn5.chr9 C 0 C 0 s equCab2.chr6 17960161 54 + 84719076 CC-AGTATCAGTTGATTCGGGGAGTGCCTCCCCATTCTTTCTATAGAACAAAG-CA i equCab2.chr6 C 0 I 3 s sarHar1.chr1_GL834736_random 478539 52 - 2599895 TCAGTCACCTATAGACTTAGAGAAT---TGGCTACCATATTCAGTGACTAAAT-TA i sarHar1.chr1_GL834736_random N 0 I 1 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=2979.000000 s mm10.chr1_GL456221_random 146027 25 + 206961 TCTTTTATGCCTGCAGAGAGCAATG s rn5.chr9 92390643 25 + 121549591 TCTTTTATGCTTACAGAGAATAATG i rn5.chr9 C 0 I 191 s sarHar1.chr1_GL834736_random 478592 21 - 2599895 TCTCTCATGCTCACAG----CACTA i sarHar1.chr1_GL834736_random I 1 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17960215 3 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=242.000000 s mm10.chr1_GL456221_random 146052 4 + 206961 CATT s sarHar1.chr1_GL834736_random 478613 4 - 2599895 TATT i sarHar1.chr1_GL834736_random C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17960215 3 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I e rn5.chr9 92390668 191 + 121549591 I a score=6696.000000 s mm10.chr1_GL456221_random 146056 178 + 206961 -AACAAGTGCATGTTCATG-CTCCTCTTACTTTCTCTGCTCTCATAC------CCAGGAAGCCACAGTGGCTGGGTCTAACTATAATGCCCCCAACCT----AGAATACACAGCTGAAGAAGTTCTTTTCTCAGATG--ATTCTTCTgttggggttttattgctgtgaa------------gagacaccatgactaaagcaact s rn5.chr9 92390859 165 + 121549591 -aatgagtgcacgatcacg-ctcacctccctttctctgctcacagac-----tccaggaagcc--------------taaccGTAATTAACATACTCT----AGAATACACATCCCAAGGGGTTCTTTTCCCAGATG--ATTCTTGTCGtagggttttattgcagtgaa------------gagacaccatgcctaaggcaact i rn5.chr9 I 191 I 173 s sarHar1.chr1_GL834736_random 478617 163 - 2599895 TATCAAAGGCAGAATTGGGACTCATCTTCCTTTCTCTGATATCAGTCCTCATTCCAGTCTACC--------------------------ACGTTCTCTTATAAGATTTCATAATtcagaa------tttctcatttgtaattcT---------GTTGTGTGCCAGTGGATACTTTGATGTTTAGACCTAATGATTTAGTTAGAT i sarHar1.chr1_GL834736_random C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17960215 3 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-77.000000 s mm10.chr1_GL456221_random 146234 5 + 206961 cttat s sarHar1.chr1_GL834736_random 478780 5 - 2599895 TGTCT i sarHar1.chr1_GL834736_random C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17960215 3 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I e rn5.chr9 92391024 173 + 121549591 I a score=8377.000000 s mm10.chr1_GL456221_random 146239 166 + 206961 aaaggaaaacatttaattggggc----tggcttacag-----tttcagcagatta-------------------gtcctttatcatcatagtgggaagcatggcagcatccaggcagatatggtgctgga-gaagaagaa--gctgagagttctacatcttgatgtgcgggcagcag------aaggagcttatgtgtcatag s rn5.chr9 92391197 161 + 121549591 aaaggagaacatttaattgggac----tggcttaga------cttcagaagttta-------------------gtccattagcatcaccgtgggaagcatggcagcatccaggcagccgtggtgctgga-gaggaaa------tgagagttctacctcttgacgtgcaggcagcag------aagaagcttgtgcgccatcc i rn5.chr9 I 173 C 0 s sarHar1.chr1_GL834736_random 478785 181 - 2599895 -------GAAATTCATCTTGTACTTCATGACTTATTGACAATttttagaaaatcataaaggGAAAGACTAGTCTGTCCTTTAACAAAATTGCTGGAAACATTTAA---------------TAGTACTGGGTGAAGAAACATTTCCCAAAGACCTACGTGCTCCAGTGTTTAtaacagggaaaaaataaaatcatgtatcTTAG i sarHar1.chr1_GL834736_random C 0 N 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17960215 3 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=2159.000000 s mm10.chr1_GL456221_random 146405 43 + 206961 tgggtgtagcttgagcatgtataacctc-aaaacccatctttac s rn5.chr9 92391358 44 + 121549591 tgggtttagcttgagcgtatataacctcgaaaagcctttctccc i rn5.chr9 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17960215 3 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=9234.000000 s mm10.chr1_GL456221_random 146448 176 + 206961 agtaaaaccccacctccaacaaggccacacacactccaacaaggtcacatctccta----atagtgctacttcctatgagccaagcattcaaacacattattagcct-atgga---gagccatatctactcaaacccctacaATTCTAGATTATAT--CAAGTTCAAGAATAAACTTACCATACCA s rn5.chr9 92391402 178 + 121549591 agtaaaacactgcctccaacaaggctacacccacttcaacaaagtcacacctccta----atagtgccacccactatcggccaagcgttcaaacacattattagtct-atggaaggggggcatatctattcgaaccac-ACAATTCTAGACTGTAT--CAAGTTCACAAACAAACTAAACATGCCA i rn5.chr9 C 0 C 0 s latCha1.JH131062 39522 169 - 85399 AGAGAAATCCAGTCTGTTTCATGGACACACTCACCCTG--AGGGTCTTCTTCCTTAATCCATAAGTCTGTCCTCAATT--CCA--CACTAATGTACACACTCATCCTGATGGT---CTCCTACTTCCATTC--------ACTGTCCTATCCTGAATTCCACTTTAATGTACACACTTGCCCCAACG i latCha1.JH131062 N 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94090592 16719 + 106825570 I e equCab2.chr6 17960215 3 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e calJac3.chr6 146770637 6935 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=422.000000 s mm10.chr1_GL456221_random 146624 1 + 206961 A s rn5.chr9 92391580 1 + 121549591 A i rn5.chr9 C 0 C 0 s rheMac3.chr12 94107311 1 + 106825570 A i rheMac3.chr12 I 16719 C 0 s calJac3.chr6 146777572 1 + 158406734 A i calJac3.chr6 I 6935 C 0 s latCha1.JH131062 39691 1 - 85399 G i latCha1.JH131062 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ponAbe2.chr2b 122719533 1858 + 135000294 I e otoGar3.GL873532 28848940 8816 - 32117204 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e equCab2.chr6 17960215 3 + 84719076 I e nomLeu2.GL397366 3681611 11349 + 6458163 I e panTro4.chr2B 235540961 11423 + 247518478 I e hg19.chr2 231162923 11005 + 243199373 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=49547.000000 s mm10.chr1_GL456221_random 146625 25 + 206961 -------TCTCCAAC-CCTGAGTGACTGACATG s rn5.chr9 92391581 25 + 121549591 -------TCTCCAAC-CCTGGGTGATTGACATG i rn5.chr9 C 0 C 0 s hg19.chr2 231173928 24 + 243199373 -------TCTTCAAC-ACTGTATGG-TGCTGTT i hg19.chr2 I 11005 C 0 s panTro4.chr2B 235552384 24 + 247518478 -------TCTTCAAC-ACTGTATGG-TGCTGTT i panTro4.chr2B I 11423 C 0 s gorGor3.chr2B 119600550 24 + 131632457 -------TCTTCAAC-ACTGTATGG-TGCTGTT i gorGor3.chr2B N 0 C 0 s ponAbe2.chr2b 122721391 24 + 135000294 -------TCTTCAAC-ACTGTATGG-TGCTGTT i ponAbe2.chr2b I 1858 C 0 s nomLeu2.GL397366 3692960 24 + 6458163 -------TCTTCAAC-ACCGTATGG-TGCTGTT i nomLeu2.GL397366 I 11349 C 0 s rheMac3.chr12 94107312 24 + 106825570 -------TCTTCAAC-ACTGTATGG-TGCTGTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146777573 25 + 158406734 -------TCTTCAAC-ACTGTATGGTTATTGTT i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28857756 24 - 32117204 -------TCTTCAAC--CTGGGTGGTCGCTGTT i otoGar3.GL873532 I 8816 C 0 s latCha1.JH131062 39692 25 - 85399 TTTCCTACCTCCATCCACTGGCCCG-------- i latCha1.JH131062 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e canFam3.chr25 42628361 2339 + 51628933 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e equCab2.chr6 17960215 3 + 84719076 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=181324.000000 s mm10.chr1_GL456221_random 146650 111 + 206961 -------------ACTACAGT-CCTTGGATTTT-A-GTGATAGTGGCTC-ATGTCTCACATG---------CCCA-T-CT--CTTTG-----------GTCTTGTGGGAT-T----TTCTACAGGGTTCCAAAAGCTAC---AGATTATTTTTTGTTTTT------ s rn5.chr9 92391606 105 + 121549591 -------------ACTACAGT-CCTTGGATTTT-A-GTGACAGTGACTCCAGGTCTCACATG---------CCCA-TTCT--CTTGG-----------GTCTTGTGGGAT-TGATCTTCTACAAGGTTCCAACAA---------------TTTTTTTTTT------ i rn5.chr9 C 0 C 0 s hg19.chr2 231173952 103 + 243199373 -------------ACCATTGT-CCTTGGTCATC-A-GAGATGGCACCTTCGCACCTTACAAT---------CCAA-GTTA--GCTAA-----------GTCAAGGGGGAT-G-----TATGCCAGGCTCCCAGAGCTGA---AGAG----CTCTG----------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552408 103 + 247518478 -------------ACCATTGT-CCTTGGTCATT-A-GAGATGGCATCTTCGCACCTTGCAAT---------CCAA-GTTA--GCTAA-----------GTCACGGGGGAT-G-----TATGCCAGGCTCCCAGAGCCGA---AGAG----CTCTG----------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600574 103 + 131632457 -------------ACCACTGT-CCTTGGTCATT-A-GAGATGGCACCTTCACACCTTACAGT---------CCAA-GTTA--GCTAA-----------GTCACGGGGGAT-G-----TATGCCAGGCTCCCAGAGCCGA---AGAG----CTCTG----------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721415 104 + 135000294 -------------ACCACTGT-CCTTGGTCATT-ATTAGATGGCATCTTCACACCTTACAAT---------CCAA-TTTA--GCTAA-----------GTCACGGGGGAT-G-----TATGCCAGGCTCCCAGAGCCAA---AGAG----CTCTG----------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3692984 103 + 6458163 -------------ACCACTGT-CCTTGGCCATT-A-GAGATGGCACCTTCCCACCTTACAAT---------CCAA-GTTA--GCTAA-----------GTCACGGGGGAT-G-----TATGCCAGGCTCCCAGAGCCGA---AGAG----CTCTG----------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107336 104 + 106825570 -------------ACCACTGT-CCTTGGCCATT-G-GAGATGGCACCTTCGCACCTTACAAT---------TCAG-GTTA--GCTAA-----------GTCATGGGAGATCA-----TCTGCCAGGCTCCCAGAGCCGA---AGAG----CTCTG----------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146777598 106 + 158406734 -------------ACCACTGT-CCTTGCTCATT-A-GAAATGACATCTTCACATCTTGCAAT---------CCAA-GTTA--GCTGA-----------GTCATGGGGGAA-A--TCTTCTGCCAGGCTCCCAGAGCCGA---AGAG----CTCTG----------- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28857780 107 - 32117204 -------------ATCACACTCCCTTGGCCATT-A-GATTTGGCACCGCCACACTTTACATG---------CCAAGGTTA--CCTAA-----------GGTA-GAGAGAG-A--TCTTCTCCCAGTCTCCCAAAGCCAA---AGAA----CTCTG----------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42630700 97 + 51628933 -------------ACCACAAT-CCCTGACCATTTG-GAGATGGCATCTCCACACCTTACATA---------TCGA-A------CTAA-----------ATCATAGAACAT-C----TTCCCACAGGCTCCCAGAGCC-A---AGAG----CT-------------- i canFam3.chr25 I 2339 C 0 s equCab2.chr6 17960218 98 + 84719076 -------------ACCACACT-CCATGGCCATTCA-GAGATGGCTCCTCCACATCTTATATG---------TCAG-G------CTAA-----------GTCATGGGGCAT-C----TTCCCTCAGGCTCCTAGAGCCAA---AGGG----AT-------------- i equCab2.chr6 I 3 C 0 s latCha1.JH131062 39717 146 - 85399 TTCTCAATTCTATACTAATGT-TCAC-ACTTTC-C-CCACCGGTCTCCTTCCTCTTTCCACTGGCCTCTCCTCAA-TTCTACACTAATGTGCGCATTTGCCCTAAGGGTC-T-----TTTCCCTCTATCCACCAACCAGTCCTTAG----TTCTA-----CACTAT i latCha1.JH131062 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4174326 1077 - 10418462 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-9371.000000 s mm10.chr1_GL456221_random 146761 24 + 206961 ------------------TGTTTTCTTCCTTGAACCC---A-CTTG---- s rn5.chr9 92391711 24 + 121549591 ------------------TTTTTGCTTTCTTGAATCC---A-CTCG---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175403 27 - 10418462 ------------------TGTTTTCATCCTAAAGCTCAAAA-CAAA---- i speTri2.JH393335 I 1077 C 0 s hg19.chr2 231174055 16 + 243199373 ----------------------TGCTTCCTGGGGCCC---A--------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552511 16 + 247518478 ----------------------TGCTCTCTGGGGCCC---A--------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600677 16 + 131632457 ----------------------TGCTCCCTGGGGCCC---A--------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721519 16 + 135000294 ----------------------TGCTCCCTGGAGCAC---A--------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693087 16 + 6458163 ----------------------TGCTCCCTGGGACCC---A--------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107440 16 + 106825570 ----------------------TGCTCCCTGTGGTCC---A--------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146777704 17 + 158406734 ----------------------TGATCCCAGGGGCCC---AC-------- i calJac3.chr6 C 0 C 0 s otoGar3.GL873532 28857887 16 - 32117204 ----------------------TCCTCCCTGGCAACC---C--------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42630797 19 + 51628933 -------------------CTGTCCTCCCTGGCAACT---A--------- i canFam3.chr25 C 0 C 0 s equCab2.chr6 17960316 19 + 84719076 -------------------CCATCCGCCCTGGCACCC---A--------- i equCab2.chr6 C 0 C 0 s latCha1.JH131062 39863 42 - 85399 TGTACACACTCTCCCCAACAATTTCCTCCTTGAATAC---A-----CTGG i latCha1.JH131062 C 0 C 0 e saiBol1.JH378144 20716 3818 + 18451090 I e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=65279.000000 s mm10.chr1_GL456221_random 146785 21 + 206961 CCT---GGTCATCTGTAGTCA--TAT s rn5.chr9 92391735 21 + 121549591 CCT---GGCCACCTGTACTCA--TAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175430 25 - 10418462 CCTCAAAATGATTATTAGTCAG-CAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174071 22 + 243199373 CCT---GGTCATCTCCACCCAC-GGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552527 22 + 247518478 CCT---GGTCATCTCCACCCAC-GGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600693 22 + 131632457 CCT---GGTCATCTCCACCCAT-GGT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721535 22 + 135000294 CCT---GATCATCTCCACCCAC-AGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693103 22 + 6458163 CCT---GGTCATCTCCACCCAC-GGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107456 22 + 106825570 CAT---GGTCATCTGTACCCAC-GGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146777721 21 + 158406734 -CT---GGTCATCTACACCCAT-GGT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24534 22 + 18451090 CCT---AGTCATCTGCACCTAT-GGT i saiBol1.JH378144 I 3818 C 0 s otoGar3.GL873532 28857903 22 - 32117204 CCT---GGTCATGTGTTCCCAT-TGT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42630816 21 + 51628933 CCT---GGCCATCTGTGGCCAC--AT i canFam3.chr25 C 0 C 0 s equCab2.chr6 17960335 23 + 84719076 CCT---GCCCATCTGTACCCATGGGT i equCab2.chr6 C 0 C 0 s latCha1.JH131062 39905 21 - 85399 CCC---ATTTTCCTGCTATCAT-AT- i latCha1.JH131062 C 0 N 0 e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=36349.000000 s mm10.chr1_GL456221_random 146806 8 + 206961 CCTGCCAT s rn5.chr9 92391756 8 + 121549591 CCTGCCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175455 8 - 10418462 CTTTTCAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174093 8 + 243199373 CCTTCCCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552549 8 + 247518478 CCTTCCCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600715 8 + 131632457 CCTTCCCC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721557 8 + 135000294 CCTTCCCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693125 8 + 6458163 CCTTCCCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107478 8 + 106825570 CCTTCCCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146777742 8 + 158406734 CCTTCCCC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24556 8 + 18451090 CCTTCCCC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28857925 8 - 32117204 ACTTCTAG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42630837 8 + 51628933 CTTTCCAC i canFam3.chr25 C 0 C 0 s equCab2.chr6 17960358 8 + 84719076 CTTTCCAA i equCab2.chr6 C 0 C 0 e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=372529.000000 s mm10.chr1_GL456221_random 146814 106 + 206961 TTCAGAGGCCCTACCACAGGCTCT-GGGCCCTCTAGACAGAAA------------------TCTCTCCAGAT----TCTTCAGTTCATGGTATGCTC-ACTGCTTAATTTACAGGATGTGG---CATTCTCTT s rn5.chr9 92391764 127 + 121549591 TGCAGAGGCCCTACCACAGGTTCT-TAACCCTCTAGACACAGGAGCCACCGTCAAAAATCTCCTCTGTAGATGCTTTCTTCAATTCATGGCATGCTT-GCAGCTTAATT-ACAAGATGCAG---TATTCTCTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175463 109 - 10418462 CTTTGATTACTTTCCATAG--TCA-GAACCCAC-AGCCCAAAG------------------CCTCTCCAGGCCTTTCCTTCAGCT-ACGGGGAGCTT-ACAGCCAAGGCTACGGGATGCAGTTATATTTCAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174101 123 + 243199373 CTCAGAGGTC--------GGCGTA-GAGCCCTCCAGGCACAAAACGTACAGTCTAGGAATCCCTAACTAGGCCCTCTCTTCAACTCATGGGGAACTT-ATGGCCAAGAATATGGGATGTGGTGATATCTCAGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552557 123 + 247518478 CTCAGAGGTC--------AGTGTA-GAGCCCTCCAGGCACAAAACCTACAGTGTAGGAACCCCTAACTAGGCCCTGTCTTCAACTCATGGGGAACTT-ATGGCCAAGAATATGGGATGTGATGATATCTCAGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600723 123 + 131632457 CTCAGAGGTC--------GGTGTA-GAGCCCTCCAGGCACAAAACCTACAATCTAGGAACCCCTAACTAGGCCCTGTCTTCAACTCATGGGGAACTT-ATGGCCAAGAATATGGGATGTGATGATATCTTAGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721565 122 + 135000294 CTCAGAGGTC--------GGCATA-GAGCCCTCCAGGCACAAAACTTACAGTCTAGGAACCCCTAACTAGGCCCTCTCTTCAACTCATGGGGAACTT-ATGGCCAAGAATATGGGATGTGATGATATCTCAG- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693133 123 + 6458163 CTCAGAGGTC--------GGCGTA-GAGCCCTCCAGGCACAAAACCTACAGTCTAGGAACCCCTAACTAGGCCCACTCTTCAACTCATTGGGAACTT-ATGGCCAAGAATATGGGATGTGATGATATCTCGGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107486 123 + 106825570 CTCAGAGGTC--------GGCGTA-GAGCCCTCCAGGCGCAAAACCTACAGTCTAGGAACCCCTAACTAGGCCCTCTCTTCAACTCATGGGGAACTT-ATGGCCAAGAATATGGCATGTGATGATATCTCAGA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146777750 123 + 158406734 CTCAGGGGTA--------GGCGCA-CAGCCCTCCTGGCACAGAACCTACAGTCCAGGAACCCCTAACTAGGCCATCTCTTCAACTCATGGGGAACTT-AGGGCCAAGCTTATGGGAAGTGATGACATCTCAGA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24564 120 + 18451090 CTCAGAGGTA--------GGTGCA-CAGCCCTTCAGGCACAGAACCTACAGTCCAGGAACCCCTAACTAGGCCGTCTCTTCAACTCCTGGGGAACTT-ATGGCCAAGAATATGGAAAGTAAT---ATCTCAGA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28857933 121 - 32117204 CCCATGGGCA--------GGCCTA-GAGCCCTCCAGGCACAGAATCCACAGTGCAGGAAGCCCTGCCCTAGTCCTTTCTCCAACTCATGGAGAGCTTAATGGCTGAGAACGTGGGATAATGTGATAACCC--- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42630845 125 + 51628933 CCCAGAGGTACTGTCACAGGCCCAGGAGCCCTCCAGTCACGGAGTCCACAGTGCAGGAACTCCTCTCCAGGAC----CTTCAAATCATGAGGAGCTT-ATGGCCAAGAAAATAGGATGCGGTGATATGTT--- i canFam3.chr25 C 0 N 0 s equCab2.chr6 17960366 124 + 84719076 CCCGAAGGCACTGTCACAGGCCCAGGAGCCCTCCAGGCACAGAATCCACAGTCTAGAAACTCCTA-CCAGGCC----CTTCAGCTCTTGGGGAGCCT-ACAGCCAAGAAAACAGTATGCAGTGCTTTCTT--- i equCab2.chr6 C 0 T 72481 s sarHar1.chr2_GL841394_random 1951070 85 - 2947391 TTCATAGATG--------ATAATA-GAACCTATGGGATCTGATAT------------AATCACCAAATGAGTC---------------------AGT-ACAGT--AAGATAAGAGAGGTGAGAACAGTGT--- i sarHar1.chr2_GL841394_random N 0 C 0 e ailMel1.GL192536.1 1079061 1422 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=120371.000000 s mm10.chr1_GL456221_random 146920 22 + 206961 AGTTTATTCAATTCAAT-TCAAT s rn5.chr9 92391891 22 + 121549591 AGTTTATTCCATCAAGT-TAAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175572 23 - 10418462 AGTTTATTCCCTCATATATAAAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174224 22 + 243199373 AGCTTATTCCATCATAT-GTAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552680 22 + 247518478 AGCTTATTCCATCATAT-GTAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600846 22 + 131632457 AGCTTATTCCATCATAT-GTAAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721687 22 + 135000294 AGCTTATTCCATCATAT-GTAAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693256 22 + 6458163 AGCTTATTCCATCATAT-GTAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107609 22 + 106825570 AGCTTATTCTCTCATGT-GTAAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146777873 22 + 158406734 AGCTTATTCCAGCATAT-ATAAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24684 22 + 18451090 AGCTTATTCCATCATAT-GTAAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858054 22 - 32117204 AGTTCATTCCATCATAT-TTCAT i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42523834 22 + 51628933 AGTTTATCCCTTCTTAT-TAAAT i canFam3.chr25 N 0 C 0 s ailMel1.GL192536.1 1080483 21 - 2169676 AGTTTATCCCGTC-TAT-TAAAT i ailMel1.GL192536.1 I 1422 C 0 s equCab2.chr6 17888009 21 + 84719076 AATTTATTCCATCTTAT-T-AAT i equCab2.chr6 T 72481 C 0 s sarHar1.chr2_GL841394_random 1951155 22 - 2947391 AAGATATTCAATTAAGC-CTTAT i sarHar1.chr2_GL841394_random C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-120.000000 s mm10.chr1_GL456221_random 146942 1 + 206961 C s rn5.chr9 92391913 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175595 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s otoGar3.GL873532 28858077 1 - 32117204 C i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42523856 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080504 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888030 1 + 84719076 T i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL841394_random 1951177 1 - 2947391 T i sarHar1.chr2_GL841394_random C 0 C 0 e saiBol1.JH378144 24706 0 + 18451090 C e ponAbe2.chr2b 122721709 0 + 135000294 C e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94107631 0 + 106825570 C e nomLeu2.GL397366 3693278 0 + 6458163 C e gorGor3.chr2B 119600868 0 + 131632457 C e panTro4.chr2B 235552702 0 + 247518478 C e hg19.chr2 231174246 0 + 243199373 C e calJac3.chr6 146777895 0 + 158406734 C e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-35140.000000 s mm10.chr1_GL456221_random 146943 4 + 206961 C-------------------CTA- s rn5.chr9 92391914 4 + 121549591 C-------------------ATA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175596 4 - 10418462 T-------------------TTA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174246 3 + 243199373 --------------------TAG- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552702 3 + 247518478 --------------------TAG- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600868 3 + 131632457 --------------------TAG- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721709 3 + 135000294 --------------------TAT- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693278 3 + 6458163 --------------------TAT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107631 3 + 106825570 --------------------TCT- i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 24706 3 + 18451090 --------------------TCT- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858078 23 - 32117204 TCCATTAAATGAGAATTAAATGA- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42523857 4 + 51628933 -------------------TTCA- i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1080505 4 - 2169676 -------------------CTCA- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17888031 4 + 84719076 -------------------CCCA- i equCab2.chr6 C 0 I 1 s sarHar1.chr2_GL841394_random 1951178 4 - 2947391 --------------------TCTG i sarHar1.chr2_GL841394_random C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e calJac3.chr6 146777895 0 + 158406734 C e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=943.000000 s mm10.chr1_GL456221_random 146947 1 + 206961 C s rn5.chr9 92391918 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175600 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174249 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552705 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600871 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721712 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693281 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107634 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 24709 1 + 18451090 C i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858101 1 - 32117204 C i otoGar3.GL873532 C 0 C 0 s sarHar1.chr2_GL841394_random 1951182 1 - 2947391 T i sarHar1.chr2_GL841394_random C 0 C 0 e canFam3.chr25 42523861 1 + 51628933 I e ailMel1.GL192536.1 1080509 1 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e equCab2.chr6 17888035 1 + 84719076 I e calJac3.chr6 146777895 0 + 158406734 C e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=466136.000000 s mm10.chr1_GL456221_random 146948 111 + 206961 ----TACATTATCCCTTAGATGAGTCAATGTCATTATTGTTATAGAGGCAAGTGGACTAAATAT--TTTATTTCAGGAACTTCTTTTATCTACATGCTAGGAAT---ATTAGTCAGATTA s rn5.chr9 92391919 110 + 121549591 ----TACATC-TCCCTTAAATGAGTCAATATCATCATTGTTATACAGGCAAGTGGACTTAATAT--TTTATTTCAGAAACTCCTTTTATCTACATGCTTGGAAC---ATTAGTCAGATTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175601 109 - 10418462 ----TAAATC-ACACTTTGTTGAGTCAATTTCATCATTATTGTATAAGCTAATGGATTCAACA---TTTATTTTAGGAA---CTTTTGTCTGCAGGCTAGTAATAAAATTATTCAGATTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174250 103 + 243199373 ----TAGGTC-TCCTTTTCACTAGTTGAT-------TTGTGGTATAGGCAAATTGATTTAACAC--TTCATTTCAAAACCTGGTTTTATCTGCAGAATAAGGAA---ATTATTCAGATTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552706 103 + 247518478 ----TAGGTC-TCCTTTTCACCAGTTGAT-------TTGTGGTATAGGCAAATTGATTTAACAC--TTTATTTCAAAACCTGGTTTTATCTGCAGAATAAGGAA---ATTATTCAGATTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600872 103 + 131632457 ----TAGGTC-TCCTTTTCACCAGTTGAT-------TTGTGGTATAGGCAAATTGATTTAACAC--TTTATTTCAAAACCCGGTTTTATCTGCAGAATAAGGAA---ATTATTCAGATTC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721713 103 + 135000294 ----TAGGTC-TCCTTTTCACCAGTTAAT-------TTGTGGTATAGGCAAATGGATTTAACAC--TTTATTTCAAAGCCTGGTTTTATCTGCAGAATAAAGAA---ATTATTCAGATTC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693282 103 + 6458163 ----TAGGTC-TCCTTTTCACCAGTTGAT-------TTGTGGTATAGGCAAATGGATTCAACAC--TTTATTTCAAAACCTGGTTTTATCTGCAGAATAAGGAA---ATTATTCAGATTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107635 103 + 106825570 ----TGAGTC-TCCTTTTCACCAGTTGAT-------TTGTGGTATAGGCAAATGGATTTAACAC--TTTATTTGAAAACCTGGTTTTATCTGCAGCATAATACA---ATTATTCAGATTC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146777895 99 + 158406734 --------TC-TCCTTTCCACCAGTTGAC-------TTGTGGTATAGGCAAATGGATTTAATAC--TTTATTTCAACACCTGCTTTTATCTGCAGCATAATACA---ATTACTCAGATTC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24710 103 + 18451090 ----TAGGTC-TCCCTTTCATGAGCTGAT-------TTGTAGTATAGGCAAATGGATTTAACAC--TTTACTTCAAAACCTGATTTTATCTGCAGCATAATACA---GTTATTCAGATTC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858102 111 - 32117204 ----TCCATT-CTTCTTCTGTGAGTCAATTTTATCATTGTGGTATATGCAGATGAATT-AACACTGTTTTTTTTAGGACTTTGTTTTATATGCAAGATAATAAA---ATAATTTAGGTTC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42523862 110 + 51628933 ----TATTTC-ACCTTTCTGTGAGTCTATGTCTCTGTTATGATATAGGCAAGTGCACTTAACAC--TTTGTTTCGAGACTTTGTTTTTCCTGCAAGGTAATAAT---ATTATTCGGATTC i canFam3.chr25 I 1 I 1 s ailMel1.GL192536.1 1080510 103 - 2169676 ----TATTTC-GC----CTGTGAGTCTGTCT---TCTTGCGGTATAGGCAAATGCATTTAACAC--TTTATTTCGGGGACTTGTCTTATCTGCAAGGTGATAAT---ATTATTCAGGTTC i ailMel1.GL192536.1 I 1 I 1 s equCab2.chr6 17888036 109 + 84719076 ----TATATC-AAGCTTGCGCAAGTCAATTTAGTCATTGTGGTGTAGCCAAGTGGATTTAAAAC--TTTATTTGAGGACATTGTTTTATCTGCAAGG-AATAAA---ATTATTCAGATTC i equCab2.chr6 I 1 I 1 s sarHar1.chr2_GL841394_random 1951183 96 - 2947391 CAAACTATTC-TCTAGTTTTCCAGATGTT------ATTATTAAATAAGTCATT-------------CTTCTGACAATAATTTGTATT-CCTGCATTATTGAATA---TTGAGTTACAATA i sarHar1.chr2_GL841394_random C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 27750 702 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-3355.000000 s mm10.chr1_GL456221_random 147059 1 + 206961 -T s rn5.chr9 92392029 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175710 1 - 10418462 -C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174353 1 + 243199373 -C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552809 1 + 247518478 -C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600975 1 + 131632457 -C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721816 1 + 135000294 -C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693385 1 + 6458163 -C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107738 1 + 106825570 -C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146777994 1 + 158406734 -C i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24813 1 + 18451090 -C i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858213 1 - 32117204 -C i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42523973 1 + 51628933 -T i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1080614 1 - 2169676 -T i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17888146 1 + 84719076 -T i equCab2.chr6 I 1 C 0 s pteVam1.scaffold_10686 28452 1 + 49512 -T i pteVam1.scaffold_10686 I 702 I 7 s sarHar1.chr2_GL841394_random 1951279 1 - 2947391 G- i sarHar1.chr2_GL841394_random C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=6653.000000 s mm10.chr1_GL456221_random 147060 5 + 206961 GTAAA- s rn5.chr9 92392030 5 + 121549591 ATAAA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175711 5 - 10418462 CTCAA- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174354 5 + 243199373 TATAA- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235552810 5 + 247518478 TATAA- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119600976 5 + 131632457 TATAA- i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122721817 5 + 135000294 TATAA- i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3693386 5 + 6458163 TATAA- i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94107739 5 + 106825570 TATAA- i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146777995 4 + 158406734 TA-AA- i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 24814 5 + 18451090 AGTAA- i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28858214 5 - 32117204 TATAA- i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42523974 4 + 51628933 -ATAA- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080615 4 - 2169676 -ATAA- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888147 4 + 84719076 -ATAA- i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL841394_random 1951280 5 - 2947391 -TTGAT i sarHar1.chr2_GL841394_random C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28453 7 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212445768 1472 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 132464 3383 + 176633 I a score=-235.000000 s mm10.chr1_GL456221_random 147065 1 + 206961 A s rn5.chr9 92392035 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175716 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s micMur1.scaffold_3075 135847 1 + 176633 A i micMur1.scaffold_3075 I 3383 C 0 s otoGar3.GL873532 28858220 1 - 32117204 A i otoGar3.GL873532 I 1 C 0 s felCat5.chrC1 212447240 1 + 221441202 A i felCat5.chrC1 I 1472 I 537 s canFam3.chr25 42523978 1 + 51628933 A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080619 1 - 2169676 C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888151 1 + 84719076 A i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL841394_random 1951285 1 - 2947391 G i sarHar1.chr2_GL841394_random C 0 C 0 e saiBol1.JH378144 24819 1 + 18451090 I e ponAbe2.chr2b 122721822 1 + 135000294 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28453 7 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 25948 1970 - 63237 I e rheMac3.chr12 94107744 1 + 106825570 I e nomLeu2.GL397366 3693391 1 + 6458163 I e gorGor3.chr2B 119600981 1 + 131632457 I e panTro4.chr2B 235552815 1 + 247518478 I e hg19.chr2 231174359 1 + 243199373 I e calJac3.chr6 146777999 1 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e dasNov3.JH581855 22416 6360 - 513109 I a score=10028.000000 s mm10.chr1_GL456221_random 147066 1 + 206961 A s rn5.chr9 92392036 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175717 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174360 1 + 243199373 A i hg19.chr2 I 1 C 0 s panTro4.chr2B 235552816 1 + 247518478 A i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119600982 1 + 131632457 A i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122721823 1 + 135000294 A i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3693392 1 + 6458163 A i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94107745 1 + 106825570 A i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146778000 1 + 158406734 A i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 24820 1 + 18451090 A i saiBol1.JH378144 I 1 C 0 s micMur1.scaffold_3075 135848 1 + 176633 A i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28858221 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 27918 1 - 63237 A i turTru2.JH486691 I 1970 I 811 s canFam3.chr25 42523979 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080620 1 - 2169676 A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888152 1 + 84719076 A i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL841394_random 1951286 1 - 2947391 G i sarHar1.chr2_GL841394_random C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28453 7 + 49512 I e myoLuc2.GL429770 26322419 1019 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I a score=13365.000000 s mm10.chr1_GL456221_random 147067 1 + 206961 T s rn5.chr9 92392037 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175718 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174361 1 + 243199373 T i hg19.chr2 C 0 I 6 s panTro4.chr2B 235552817 1 + 247518478 T i panTro4.chr2B C 0 I 6 s gorGor3.chr2B 119600983 1 + 131632457 T i gorGor3.chr2B C 0 I 6 s ponAbe2.chr2b 122721824 1 + 135000294 T i ponAbe2.chr2b C 0 I 6 s nomLeu2.GL397366 3693393 1 + 6458163 T i nomLeu2.GL397366 C 0 I 6 s rheMac3.chr12 94107746 1 + 106825570 T i rheMac3.chr12 C 0 I 6 s calJac3.chr6 146778001 1 + 158406734 T i calJac3.chr6 C 0 I 6 s saiBol1.JH378144 24821 1 + 18451090 T i saiBol1.JH378144 C 0 I 6 s micMur1.scaffold_3075 135849 1 + 176633 T i micMur1.scaffold_3075 C 0 I 24 s otoGar3.GL873532 28858222 1 - 32117204 T i otoGar3.GL873532 C 0 I 6 s canFam3.chr25 42523980 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080621 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888153 1 + 84719076 T i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26323438 1 + 30916457 T i myoLuc2.GL429770 I 1019 C 0 s pteVam1.scaffold_10686 28460 1 + 49512 T i pteVam1.scaffold_10686 I 7 C 0 s sarHar1.chr2_GL841394_random 1951287 1 - 2947391 C i sarHar1.chr2_GL841394_random C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 27919 811 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I a score=11099.000000 s mm10.chr1_GL456221_random 147068 1 + 206961 C s rn5.chr9 92392038 1 + 121549591 C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175719 1 - 10418462 C i speTri2.JH393335 C 0 I 6 s hg19.chr2 231174368 1 + 243199373 C i hg19.chr2 I 6 C 0 s panTro4.chr2B 235552824 1 + 247518478 C i panTro4.chr2B I 6 C 0 s gorGor3.chr2B 119600990 1 + 131632457 C i gorGor3.chr2B I 6 C 0 s ponAbe2.chr2b 122721831 1 + 135000294 C i ponAbe2.chr2b I 6 C 0 s nomLeu2.GL397366 3693400 1 + 6458163 C i nomLeu2.GL397366 I 6 C 0 s rheMac3.chr12 94107753 1 + 106825570 C i rheMac3.chr12 I 6 C 0 s calJac3.chr6 146778008 1 + 158406734 T i calJac3.chr6 I 6 C 0 s saiBol1.JH378144 24828 1 + 18451090 C i saiBol1.JH378144 I 6 C 0 s otoGar3.GL873532 28858229 1 - 32117204 C i otoGar3.GL873532 I 6 C 0 s canFam3.chr25 42523981 1 + 51628933 C i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1080622 1 - 2169676 C i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17888154 1 + 84719076 C i equCab2.chr6 C 0 I 1 s myoLuc2.GL429770 26323439 1 + 30916457 C i myoLuc2.GL429770 C 0 I 569 s pteVam1.scaffold_10686 28461 1 + 49512 C i pteVam1.scaffold_10686 C 0 I 1 s sarHar1.chr2_GL841394_random 1951288 1 - 2947391 T i sarHar1.chr2_GL841394_random C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 27919 811 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135850 24 + 176633 I a score=-6905.000000 s mm10.chr1_GL456221_random 147069 3 + 206961 -TT-G s rn5.chr9 92392039 3 + 121549591 -TT-G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175726 3 - 10418462 -TT-G i speTri2.JH393335 I 6 C 0 s hg19.chr2 231174369 3 + 243199373 -TT-G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552825 3 + 247518478 -TT-G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600991 3 + 131632457 -TT-G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721832 3 + 135000294 -TT-G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693401 3 + 6458163 -TT-G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107754 3 + 106825570 -TT-G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778009 3 + 158406734 -TT-G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24829 3 + 18451090 -TT-G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858230 3 - 32117204 -TT-G i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42523983 2 + 51628933 -TC-- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1080624 2 - 2169676 -TC-- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17888156 2 + 84719076 -TC-- i equCab2.chr6 I 1 C 0 s pteVam1.scaffold_10686 28463 3 + 49512 -TTG- i pteVam1.scaffold_10686 I 1 I 12931 s sarHar1.chr2_GL841394_random 1951289 3 - 2947391 TTT-- i sarHar1.chr2_GL841394_random C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 27919 811 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135850 24 + 176633 I a score=27932.000000 s mm10.chr1_GL456221_random 147072 4 + 206961 TTTT s rn5.chr9 92392042 4 + 121549591 TTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175729 4 - 10418462 TTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174372 4 + 243199373 CTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552828 4 + 247518478 CTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119600994 4 + 131632457 CTTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721835 4 + 135000294 CTTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693404 4 + 6458163 CTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107757 4 + 106825570 CTTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778012 4 + 158406734 CTTT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24832 4 + 18451090 CTTT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858233 4 - 32117204 TTTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42523985 4 + 51628933 TTCT i canFam3.chr25 C 0 I 23 s ailMel1.GL192536.1 1080626 4 - 2169676 TTCT i ailMel1.GL192536.1 C 0 I 6 s equCab2.chr6 17888158 4 + 84719076 CTTT i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL841394_random 1951292 4 - 2947391 ATAT i sarHar1.chr2_GL841394_random C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 27919 811 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135850 24 + 176633 I a score=56907.000000 s mm10.chr1_GL456221_random 147076 9 + 206961 ATGGCTAGT s rn5.chr9 92392046 9 + 121549591 GTTGCTAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175733 9 - 10418462 GCTGTTGGT i speTri2.JH393335 C 0 I 13 s hg19.chr2 231174376 9 + 243199373 GTTGCTAGT i hg19.chr2 C 0 I 9 s panTro4.chr2B 235552832 9 + 247518478 GTTGCTAGT i panTro4.chr2B C 0 I 14 s gorGor3.chr2B 119600998 9 + 131632457 GTTGCTAGT i gorGor3.chr2B C 0 I 14 s ponAbe2.chr2b 122721839 9 + 135000294 GTTGCTAGT i ponAbe2.chr2b C 0 I 14 s nomLeu2.GL397366 3693408 9 + 6458163 GTTGCTAGT i nomLeu2.GL397366 C 0 I 14 s rheMac3.chr12 94107761 9 + 106825570 ATTGCTAGT i rheMac3.chr12 C 0 I 16 s calJac3.chr6 146778016 9 + 158406734 GTTGCTAGT i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 24836 9 + 18451090 GTAACTAGT i saiBol1.JH378144 C 0 I 8 s otoGar3.GL873532 28858237 9 - 32117204 GTTGCTCTT i otoGar3.GL873532 C 0 I 1 s ailMel1.GL192536.1 1080636 9 - 2169676 TCTGCTAGT i ailMel1.GL192536.1 I 6 I 2 s equCab2.chr6 17888162 9 + 84719076 GTTGCTAGT i equCab2.chr6 C 0 I 8 s sarHar1.chr2_GL841394_random 1951296 9 - 2947391 CTTGCTTGT i sarHar1.chr2_GL841394_random C 0 C 0 e canFam3.chr25 42523989 23 + 51628933 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 27919 811 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135850 24 + 176633 I a score=-2600.000000 s mm10.chr1_GL456221_random 147085 2 + 206961 -ta s rn5.chr9 92392055 2 + 121549591 -TG i rn5.chr9 C 0 C 0 s calJac3.chr6 146778026 1 + 158406734 -T- i calJac3.chr6 I 1 C 0 s micMur1.scaffold_3075 135874 1 + 176633 -T- i micMur1.scaffold_3075 I 24 I 418 s otoGar3.GL873532 28858247 1 - 32117204 -T- i otoGar3.GL873532 I 1 C 0 s ailMel1.GL192536.1 1080647 1 - 2169676 -T- i ailMel1.GL192536.1 I 2 C 0 s sarHar1.chr2_GL841394_random 1951305 2 - 2947391 TT- i sarHar1.chr2_GL841394_random C 0 C 0 e saiBol1.JH378144 24845 8 + 18451090 I e ponAbe2.chr2b 122721848 14 + 135000294 I e canFam3.chr25 42523989 23 + 51628933 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4175742 13 - 10418462 I e turTru2.JH486691 27919 811 - 63237 I e rheMac3.chr12 94107770 16 + 106825570 I e equCab2.chr6 17888171 8 + 84719076 I e nomLeu2.GL397366 3693417 14 + 6458163 I e gorGor3.chr2B 119601007 14 + 131632457 I e panTro4.chr2B 235552841 14 + 247518478 I e hg19.chr2 231174385 9 + 243199373 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I a score=814.000000 s mm10.chr1_GL456221_random 147087 4 + 206961 -tctt s rn5.chr9 92392057 4 + 121549591 -TCtt i rn5.chr9 C 0 C 0 s calJac3.chr6 146778027 4 + 158406734 -TTTT i calJac3.chr6 C 0 I 2 s otoGar3.GL873532 28858248 4 - 32117204 -TTTT i otoGar3.GL873532 C 0 I 12 s ailMel1.GL192536.1 1080648 4 - 2169676 -TCTG i ailMel1.GL192536.1 C 0 C 0 s sarHar1.chr2_GL841394_random 1951307 4 - 2947391 ATTT- i sarHar1.chr2_GL841394_random C 0 C 0 e saiBol1.JH378144 24845 8 + 18451090 I e ponAbe2.chr2b 122721848 14 + 135000294 I e canFam3.chr25 42523989 23 + 51628933 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4175742 13 - 10418462 I e turTru2.JH486691 27919 811 - 63237 I e rheMac3.chr12 94107770 16 + 106825570 I e equCab2.chr6 17888171 8 + 84719076 I e nomLeu2.GL397366 3693417 14 + 6458163 I e gorGor3.chr2B 119601007 14 + 131632457 I e panTro4.chr2B 235552841 14 + 247518478 I e hg19.chr2 231174385 9 + 243199373 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=-653.000000 s mm10.chr1_GL456221_random 147091 4 + 206961 agtt s rn5.chr9 92392061 2 + 121549591 ag-- i rn5.chr9 C 0 C 0 s ailMel1.GL192536.1 1080652 1 - 2169676 ---T i ailMel1.GL192536.1 C 0 I 3 s sarHar1.chr2_GL841394_random 1951311 4 - 2947391 AGTT i sarHar1.chr2_GL841394_random C 0 C 0 e saiBol1.JH378144 24845 8 + 18451090 I e ponAbe2.chr2b 122721848 14 + 135000294 I e otoGar3.GL873532 28858252 12 - 32117204 I e canFam3.chr25 42523989 23 + 51628933 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4175742 13 - 10418462 I e turTru2.JH486691 27919 811 - 63237 I e rheMac3.chr12 94107770 16 + 106825570 I e equCab2.chr6 17888171 8 + 84719076 I e nomLeu2.GL397366 3693417 14 + 6458163 I e gorGor3.chr2B 119601007 14 + 131632457 I e panTro4.chr2B 235552841 14 + 247518478 I e hg19.chr2 231174385 9 + 243199373 I e calJac3.chr6 146778031 2 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=-23.000000 s mm10.chr1_GL456221_random 147095 2 + 206961 ag s sarHar1.chr2_GL841394_random 1951315 2 - 2947391 TG i sarHar1.chr2_GL841394_random C 0 N 0 e saiBol1.JH378144 24845 8 + 18451090 I e ponAbe2.chr2b 122721848 14 + 135000294 I e otoGar3.GL873532 28858252 12 - 32117204 I e canFam3.chr25 42523989 23 + 51628933 I e ailMel1.GL192536.1 1080653 3 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4175742 13 - 10418462 I e turTru2.JH486691 27919 811 - 63237 I e rheMac3.chr12 94107770 16 + 106825570 I e equCab2.chr6 17888171 8 + 84719076 I e nomLeu2.GL397366 3693417 14 + 6458163 I e gorGor3.chr2B 119601007 14 + 131632457 I e panTro4.chr2B 235552841 14 + 247518478 I e hg19.chr2 231174385 9 + 243199373 I e calJac3.chr6 146778031 2 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I e rn5.chr9 92392063 0 + 121549591 C a score=22326.000000 s mm10.chr1_GL456221_random 147097 357 + 206961 ggttttattgctgggaagatataacatgaccagggcaactcttataaaaaa---------------------tttgttttcattgggtctggcttacggttcagaggtctagtccattatcatcatggcaggaagcatggcagcatgctggctgacatggtgctggagcagtagctgagagttttacaactggattagaaggcagcagaaagttgactgtgaacctctaggtctggtttgaactacctagacctcaaagtctgccccctagtgatggaattcctccaacaaagtcatgctggtttcaacaaggccacaactcctaatagcaccactccct--------atgggggccatttttattcaaaccagcacCCTAAGATT s rn5.chr9 92392063 383 + 121549591 ggttttatagctgtgaagaaataccatgaccaggacaattcttataaacaaacaaacaaataaacaacctcacgacatttcattgggtctggcttacagttcagaggtttagttaattatcatcatgacaggg-gcatggcagcatgcaggctgacacggtgctggagaggcagctgggagttttacatctggatcggaaggcagcaggaagt-gactgtgagctgctaggcctggtttaaactaccaagacctcaaagtctgcccc-tagtgatggacttcctccaacaaagccatagctgtctcaacaaggccacacatcctaatagtgccactccctgtgatcctatgggggccatttttattcaaaccaccacaCTTGTATT i rn5.chr9 C 0 C 0 e saiBol1.JH378144 24845 8 + 18451090 I e ponAbe2.chr2b 122721848 14 + 135000294 I e otoGar3.GL873532 28858252 12 - 32117204 I e canFam3.chr25 42523989 23 + 51628933 I e ailMel1.GL192536.1 1080653 3 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4175742 13 - 10418462 I e turTru2.JH486691 27919 811 - 63237 I e rheMac3.chr12 94107770 16 + 106825570 I e equCab2.chr6 17888171 8 + 84719076 I e nomLeu2.GL397366 3693417 14 + 6458163 I e gorGor3.chr2B 119601007 14 + 131632457 I e panTro4.chr2B 235552841 14 + 247518478 I e hg19.chr2 231174385 9 + 243199373 I e calJac3.chr6 146778031 2 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=-1107.000000 s mm10.chr1_GL456221_random 147454 4 + 206961 GGGG-- s rn5.chr9 92392446 4 + 121549591 CTGT-- i rn5.chr9 C 0 C 0 s turTru2.JH486691 28730 4 - 63237 --ggaa i turTru2.JH486691 I 811 I 233 e saiBol1.JH378144 24845 8 + 18451090 I e ponAbe2.chr2b 122721848 14 + 135000294 I e otoGar3.GL873532 28858252 12 - 32117204 I e canFam3.chr25 42523989 23 + 51628933 I e ailMel1.GL192536.1 1080653 3 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4175742 13 - 10418462 I e rheMac3.chr12 94107770 16 + 106825570 I e equCab2.chr6 17888171 8 + 84719076 I e nomLeu2.GL397366 3693417 14 + 6458163 I e gorGor3.chr2B 119601007 14 + 131632457 I e panTro4.chr2B 235552841 14 + 247518478 I e hg19.chr2 231174385 9 + 243199373 I e calJac3.chr6 146778031 2 + 158406734 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=1000.000000 s mm10.chr1_GL456221_random 147458 1 + 206961 G s rn5.chr9 92392450 1 + 121549591 G i rn5.chr9 C 0 C 0 s calJac3.chr6 146778033 1 + 158406734 G i calJac3.chr6 I 2 C 0 s saiBol1.JH378144 24853 1 + 18451090 G i saiBol1.JH378144 I 8 C 0 s equCab2.chr6 17888179 1 + 84719076 G i equCab2.chr6 I 8 C 0 e ponAbe2.chr2b 122721848 14 + 135000294 I e otoGar3.GL873532 28858252 12 - 32117204 I e canFam3.chr25 42523989 23 + 51628933 I e ailMel1.GL192536.1 1080653 3 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4175742 13 - 10418462 I e turTru2.JH486691 28734 233 - 63237 I e rheMac3.chr12 94107770 16 + 106825570 I e nomLeu2.GL397366 3693417 14 + 6458163 I e gorGor3.chr2B 119601007 14 + 131632457 I e panTro4.chr2B 235552841 14 + 247518478 I e hg19.chr2 231174385 9 + 243199373 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=3641.000000 s mm10.chr1_GL456221_random 147459 2 + 206961 TC s rn5.chr9 92392451 2 + 121549591 TC i rn5.chr9 C 0 C 0 s hg19.chr2 231174394 2 + 243199373 TT i hg19.chr2 I 9 C 0 s calJac3.chr6 146778034 2 + 158406734 TT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24854 2 + 18451090 TT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858264 2 - 32117204 TT i otoGar3.GL873532 I 12 C 0 s canFam3.chr25 42524012 2 + 51628933 TT i canFam3.chr25 I 23 C 0 s equCab2.chr6 17888180 2 + 84719076 TT i equCab2.chr6 C 0 C 0 e ponAbe2.chr2b 122721848 14 + 135000294 I e ailMel1.GL192536.1 1080653 3 - 2169676 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4175742 13 - 10418462 I e turTru2.JH486691 28734 233 - 63237 I e rheMac3.chr12 94107770 16 + 106825570 I e nomLeu2.GL397366 3693417 14 + 6458163 I e gorGor3.chr2B 119601007 14 + 131632457 I e panTro4.chr2B 235552841 14 + 247518478 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=2025.000000 s mm10.chr1_GL456221_random 147461 3 + 206961 AGG s rn5.chr9 92392453 3 + 121549591 AGG i rn5.chr9 C 0 C 0 s hg19.chr2 231174396 3 + 243199373 ACA i hg19.chr2 C 0 C 0 s calJac3.chr6 146778036 3 + 158406734 ATA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24856 3 + 18451090 ACA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858266 3 - 32117204 AGA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524014 3 + 51628933 AGA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080656 3 - 2169676 AGG i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17888182 3 + 84719076 TGA i equCab2.chr6 C 0 C 0 e ponAbe2.chr2b 122721848 14 + 135000294 I e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e speTri2.JH393335 4175742 13 - 10418462 I e turTru2.JH486691 28734 233 - 63237 I e rheMac3.chr12 94107770 16 + 106825570 I e nomLeu2.GL397366 3693417 14 + 6458163 I e gorGor3.chr2B 119601007 14 + 131632457 I e panTro4.chr2B 235552841 14 + 247518478 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=13525.000000 s mm10.chr1_GL456221_random 147464 2 + 206961 AT s rn5.chr9 92392456 2 + 121549591 AT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175755 2 - 10418462 AT i speTri2.JH393335 I 13 C 0 s hg19.chr2 231174399 2 + 243199373 AT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552855 2 + 247518478 AT i panTro4.chr2B I 14 C 0 s gorGor3.chr2B 119601021 2 + 131632457 AT i gorGor3.chr2B I 14 C 0 s ponAbe2.chr2b 122721862 2 + 135000294 AT i ponAbe2.chr2b I 14 C 0 s nomLeu2.GL397366 3693431 2 + 6458163 AT i nomLeu2.GL397366 I 14 C 0 s calJac3.chr6 146778039 2 + 158406734 AT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24859 2 + 18451090 GT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858269 1 - 32117204 -T i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42524017 2 + 51628933 AT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080659 2 - 2169676 AT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888185 2 + 84719076 AT i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 28734 233 - 63237 I e rheMac3.chr12 94107770 16 + 106825570 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=335817.000000 s mm10.chr1_GL456221_random 147466 69 + 206961 CTTTGGTTTCACAGGGAAGATGG-----GGTCTGGT--TCATGCCT------CCCTTCTCCCAGACTTCACTGAAGACCAGG s rn5.chr9 92392458 74 + 121549591 TTTTGGTTTTACAGGGAGGATGGTTTGGGGTCTGGT--TCCTGCTT------CCCTTCTCCCAGACTTCATTGAAGACCAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175757 68 - 10418462 CTCTGGTTTTG-AGAGGAAATGTTTTCTGGTATGGC--ACGTGGTC------TCCTCTTCCTGAACTTTAACAG-----AAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174401 72 + 243199373 CTCTGGTTTCATAAGGAAGACTTTTCA-ATTCTGAC--CCATAC-C------CCTTCCTCCTGAACTTCACTGCAGACCAGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552857 72 + 247518478 CTCTGGTTTCATAAGGAAAACTTTTCA-ATTCTGAC--CCATAC-C------CCTTCCTCCTGAACTTCACTGCAGACCAGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601023 72 + 131632457 CTCTGGTTTCATAAGGAAAACTTTTCA-ATTCTGAC--CCATAC-C------CCTTCCTCCTGAACTTCACTGCAGACCAGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721864 72 + 135000294 CTCTGGTTTCATAAGGAAAACTTTTCA-ATTCTGAC--CCACAA-C------CCTTCCTCCTGAACTTCACTGCAGACCAGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693433 72 + 6458163 CTCTGGTTTCATAAGGAAAACTTTTCA-ATTCTGAC--CCATAC-C------CCTTCCTCCTGAACTTCACTGCAGACCAGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107786 72 + 106825570 CTCTGGTTTTATAAGGAAAACGTTTTT-ATTCTGAC--ACATAC-C------CCTGCCTCCTGAACTTCACTGCAGACCAGG i rheMac3.chr12 I 16 C 0 s calJac3.chr6 146778041 72 + 158406734 CTCTGGATTTATAAGGAAAACTTTTCA-ATTCTGAC--ACATAC-C------CCTTCCTCCTGAACTTCACTACAGACTAGG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24861 70 + 18451090 CTCTGGTTTCATAAGGAAACATTTT---ATTCTGAC--ACATAC-C------CCTTCCTCCTGAACTTCACTGCAGACTAGG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858271 74 - 32117204 CTTTCGTTTTGTAAGGAAAACTTTTCT-GTTCTGACATCCAGCC-C------CGTCCCTTCTGAACGTCACTGCAGCCCAGG i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42524019 73 + 51628933 CTCTGGTTTTATAGGGAGAACTTTTCT-CGTATGAT--ACACAGAC------CCCTCCTCCTGAGCATCATTGAGGATGGTG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080661 79 - 2169676 CTCTGGTTTTATAGGAAGAACTTTTCT-GGTATGAC--ACACAAGCCCCCCACCCCCACCCCGAGCAGCATTGCAGATGGCA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888187 73 + 84719076 CTCTGATCTTATGGATAAAACTTTTCT-GGTCTGAC--ACACAGAT------CCCTCCTCCTGAACTTCCCTGCAGACCATG i equCab2.chr6 C 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 28734 233 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=364009.000000 s mm10.chr1_GL456221_random 147535 104 + 206961 AA-GCCTTG---TTTTGCAAATTGTGTTCCATGTTTTTCCTA-------AATCTACCAGGCAGAA-GCATCAA--TTTCCT--TATAGATTCGTGCAAAGGCC-ACCTTGTGGA------GGATTGC s rn5.chr9 92392532 103 + 121549591 AA-ATCTTG---TTTTGCAAATTGTGGTTCATGTTTTTACTA-------AATATCCGAGGTAGAA-GCATCAA--TGTCCT--TGTAGACTCATGCAAAGGTC-AACT-GTGGA------GGATTGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175825 97 - 10418462 AT-GTCTTG----TCTGAACTCTCCACTCCAAGCACCTACTA-----------TCCCAGGGAGAA-GCAAATG--GGCCCA--TGCAGGTTTGCCCAGAGGCT-TGT--GTTCT------GGGTTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174473 102 + 243199373 A----TTTG---TTCTGAAATCTCCATGCCATGTTTTTCCTT-------CATATCCCAGGGAGAA-GCATTTGCCTGTCCA--TGCAGGTTCACACAAAGGCA-GTGT-GTTCT------AGTTGCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235552929 102 + 247518478 A----TTTG---TTCTGAAATCTCCATGCCATGCTTTTCCTT-------CATATCCCAGGGAGAA-GCATTTGCCTGTCCA--TGTAGGTTCACACAAAGGCA-GTGT-GTTCT------AGATGCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601095 102 + 131632457 A----TTTG---TTCTGAAATCTCCATGCCATGCTTTTCCTT-------CATATCCCAGGGAGAA-GCATTTGCCTGTCCA--TGCAGGTTCACACAAAGGCA-GTGT-GTTCT------AGATGCC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122721936 102 + 135000294 A----TTTG---TTCTGAAATCTCCATGCCATGCTTTTCCTT-------CATATCCCAGGGAGAA-GCATATGCCTGTCTA--TACAGGCTCACACATAAGCA-GTGT-GTTCT------AGATGCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693505 102 + 6458163 A----TTTG---TTCTGAAATCTCCATGCCATGCTTTTCCTT-------CATATCTCAGGCAGAA-GCATACGCCTGTCCA--TGCAGGTTCACACAAAGGCA-TTGT-GTTCT------AGATGCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107858 101 + 106825570 A----TTTG---TTCTGAAATCTCCATGCCATGCTTTTCCTT-------CATATCCCAGGGAGAA-GCATACGCCTGTCCA--CACAGACTCACACA-AGGCA-GTGT-GTTCT------AGATGCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778113 90 + 158406734 A----TTTG---TTCTGAAATCTCCAGGCCATGATTCTCCTG-------CATACCCCAGTGAGAA-GCAAATGCCTGTTGA--TGCAGGTT-ATGCAAAGGCA-------------------GTGCC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 24931 103 + 18451090 C----TTTG---TTCTGAAATTTCCAGGCCATGCTTTTCCTT-------TACATCCCAGTGAGAA-GCAAATGCCTGTCCA--CGCAGGTTCACGCAAAGGTAAGAGT-GTTCT------AGATGGC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858345 87 - 32117204 A--GCCTTG---TTATGAAATCTGCACTCCATTTTGTTTCTT-------GATATCTCAGGGAG-----------------A--TCCAGTTTCATG-AAAGGCA-GTGT-GTTCT------AGATTCC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524092 100 + 51628933 A----TTTC---TTCCAAAGTCTCCACTCCATGCTGTTCCTT-------CATACCTC--GGAGAA-GTATAGACGTGTCTG--TGCAGGTTCACACAAAAGCA-GTGA-ATTCT------AGATCCC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080740 102 - 2169676 A----TTTC---TTCTGAAGTCTCCACTCTATGCTGCTCCTT-------CATCCCTCGGGGAGAA-GCATAAATGTGTCCA--GGCAGGTTCACACAAAGGCA-GCGA-ATTCT------AGATTCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888260 105 + 84719076 A----TTTCTTGTTCCGAAACCTCCACTCCATGCTGTTCCTT-------CATAGCTCAGGGAGAA-GCATATAAGTGACCA--CGCAGGTTCACACAAAGGCA-GTGA-ATTCT------AGATTCC i equCab2.chr6 C 0 C 0 s sarHar1.chr3_GL849727_random 9381 121 - 994684 -AAGTCTCA---CATTTTAAACTGTGTTCTACAGCTTTCTTAAACTTAGCAAATCCAAGACAGAATGCATTCTTTCCCCAAATTCCATACTCTTCCAAATATC-TCTT-ATTTCTGTCAAAGATGGC i sarHar1.chr3_GL849727_random N 0 C 0 e proCap1.scaffold_27553 13071 5573 + 24860 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 28734 233 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=41955.000000 s mm10.chr1_GL456221_random 147639 11 + 206961 CA-----------------------------------------------ATGGTGAAG s rn5.chr9 92392635 44 + 121549591 CACAGTGGTGGCTTTGC-AAATC---------TCACCATCCCTCA----ATGATTTAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175922 47 - 10418462 CATAGCAGTGGCTTTGCGGGGTC---------TTGCCAATCCCAGTGACACGGTT--G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174575 47 + 243199373 CAGAGGGTTGGCCTTCCTGAATC---------TTGCGGTTCCCAGTGACGTGGAC--A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553031 47 + 247518478 CAGAGGGTTGGCCTTCCTGAATC---------TTGCGGTTCCCAGTGACGTGGAC--A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601197 47 + 131632457 CAGAGGGTTGGCCTTCCTGAATC---------TTGCGGTTCCCAGTGACGTGGAC--A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722038 47 + 135000294 CAGAGGGGTGGCCTTCCTGAATC---------TTGCGATTCCCAGTGACATGGAC--A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693607 47 + 6458163 CAGAGGGGTGGCCTTCCTGAATC---------TTGCGGTTCCCAGTGACGTGGAC--A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94107959 47 + 106825570 CAGAGGGGTGGCCTTCCTGAATC---------TTGCAGTTCCCAGTGACGTGGAC--G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778203 55 + 158406734 CAGAGGGG-GGCCTTCCTGAATCTGTCACAGGTGGCAGATCCCTGTGACGTGGAC--A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25034 47 + 18451090 CAGAAGGGTGGCCTTCCTGAATC---------TTGCAGATCCCTATGATGTGGAC--A i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858432 46 - 32117204 CACAGTGGTGGCC-TCCAGAGCC---------TCACTGATCTCGGTGATGTGGAC--A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524192 41 + 51628933 CATAGCGGTGGCCTGTTAGGGTC---------TCCC------TGGGGATGTGAAC--A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080842 41 - 2169676 CATCGCGGTGGCCTGCTGGGGTC---------TCAC------CAGGGGTACGGAC--A i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888365 40 + 84719076 CATAGTGCTGGCCTTTTGGGGTC---------TCAC------ATGGGAT-TGGAC--A i equCab2.chr6 C 0 C 0 s proCap1.scaffold_27553 18644 11 + 24860 ------------------------------------CAATCCTAGTT----------- i proCap1.scaffold_27553 I 5573 N 0 s sarHar1.chr3_GL849727_random 9502 6 - 994684 ---------ATCATT------------------------------------------- i sarHar1.chr3_GL849727_random C 0 C 0 e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 28734 233 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=27487.000000 s mm10.chr1_GL456221_random 147650 4 + 206961 ATGT s rn5.chr9 92392679 4 + 121549591 ATGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175969 4 - 10418462 TTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174622 4 + 243199373 CTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553078 4 + 247518478 CTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601244 4 + 131632457 CTGT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722085 4 + 135000294 CTGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693654 4 + 6458163 CTGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108006 4 + 106825570 CTGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778258 4 + 158406734 CTGT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25081 4 + 18451090 CTGT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858478 4 - 32117204 TTGT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524233 4 + 51628933 TTGT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080883 4 - 2169676 TTCT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888405 4 + 84719076 TTGT i equCab2.chr6 C 0 C 0 s sarHar1.chr3_GL849727_random 9508 4 - 994684 CTTT i sarHar1.chr3_GL849727_random C 0 N 0 e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 28734 233 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=23641.000000 s mm10.chr1_GL456221_random 147654 3 + 206961 TCT s rn5.chr9 92392683 3 + 121549591 TCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175973 3 - 10418462 TTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174626 3 + 243199373 TTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553082 3 + 247518478 TTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601248 3 + 131632457 TTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722089 3 + 135000294 TTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693658 3 + 6458163 TTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108010 3 + 106825570 TTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778262 3 + 158406734 TTT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25085 3 + 18451090 TTT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858482 3 - 32117204 TTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524237 3 + 51628933 CTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080887 3 - 2169676 TTC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888409 3 + 84719076 TCT i equCab2.chr6 C 0 C 0 s monDom5.chr2 530365508 3 - 541556283 TCA i monDom5.chr2 N 0 C 0 s sarHar1.chr4_GL857037_random 61871 3 + 214398 ttt i sarHar1.chr4_GL857037_random N 0 C 0 e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 28734 233 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=5142.000000 s mm10.chr1_GL456221_random 147657 3 + 206961 ATT- s rn5.chr9 92392686 3 + 121549591 ATT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175976 3 - 10418462 CTC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174629 3 + 243199373 ATC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553085 3 + 247518478 ATC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601251 3 + 131632457 ACC- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722092 3 + 135000294 ACC- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693661 3 + 6458163 ACC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108013 3 + 106825570 ACC- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778265 3 + 158406734 ACC- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25088 3 + 18451090 ACC- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858485 3 - 32117204 ACC- i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 28967 3 - 63237 ACC- i turTru2.JH486691 I 233 I 657 s canFam3.chr25 42524240 3 + 51628933 GCC- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080890 3 - 2169676 GCC- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888412 3 + 84719076 ATC- i equCab2.chr6 C 0 C 0 s monDom5.chr2 530365511 3 - 541556283 -CTT i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 61874 3 + 214398 -cct i sarHar1.chr4_GL857037_random C 0 C 0 e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=152405.000000 s mm10.chr1_GL456221_random 147660 21 + 206961 TTCTAGATTCAGAACTCAGAT s rn5.chr9 92392689 21 + 121549591 TTCTACATTCAGAACTCAGAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4175979 21 - 10418462 TTCTAGATGGGAAACTCGGAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174632 21 + 243199373 TTCTAGATGAGAAACCTGGAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553088 21 + 247518478 TTCTAGATGAGAAACCTGGAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601254 21 + 131632457 TTCTAGATGAGAAACCTGGAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722095 21 + 135000294 TTCTAGATGAGAAACTTGGAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693664 21 + 6458163 TTCTAGATGAGAAACTTGGAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108016 21 + 106825570 TTCTAGATGAGAAACTTGGAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778268 21 + 158406734 TTCTAGATGGGAAACTTGGAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25091 21 + 18451090 TTCTAGATGAGAAACGTGGAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858488 21 - 32117204 CTCTAGCTGGGAAACATGGAC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524243 21 + 51628933 TTTTAGCTGGGAAACTCTGAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080893 21 - 2169676 TTCTAGCTGGGAAACTCCGAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888415 21 + 84719076 TTGTAGCTGGGAAACTCAGAT i equCab2.chr6 C 0 C 0 s monDom5.chr2 530365514 21 - 541556283 TTTCAGCCAGAGAATAGTGAT i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 61877 21 + 214398 tttcagcCAGAGAATAGCAAT i sarHar1.chr4_GL857037_random C 0 C 0 s ornAna1.chr7 32349019 21 + 40039088 TTCTAGCCTGAAAACGATGAC i ornAna1.chr7 N 0 C 0 e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 244338562 0 + 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=898274.000000 s mm10.chr1_GL456221_random 147681 83 + 206961 GAATGTGAGGTGTGCCGGGATGGAGGAACACTCTTCTGCTGTGATACTTGTTTCAGAGCCTTCCATGAGGACTGTCATATCCC s rn5.chr9 92392710 83 + 121549591 GAGTGTGAGGTGTGCCGGGATGGAGGAACGCTCTTCTGCTGTGACACATGTTCCAGAGCCTTCCATGAAGAGTGTCATATCCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176000 83 - 10418462 GTGTGTGAGGTGTGTCGGCGTAGGGGACTGCTGTTCTGCTGTGACACTTGCTCCAGAGCCTTCCATAGGAACTGTCACATTCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174653 83 + 243199373 GAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTGCGACACTTGTTCAAGAGTCTTCCATGAGGACTGTCACATCCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553109 83 + 247518478 GAGTGTGAGGTGTGCCGGGATGGAGGGGAGCTGTTCTGTTGCGACACTTGTTCAAGAGTCTTCCATGAGGACTGTCACATCCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601275 83 + 131632457 GAGTGTGAGGTGTGCCGGGATGGAGGGGAGCTGTTCTGTTGCGACACTTGTTCAAGAGTCTTCCATGAGGACTGTCACATCCC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722116 83 + 135000294 GAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTGTGACACTTGTTCAAGAGTCTTCCATGAGGACTGCCACATCCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693685 83 + 6458163 GAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTGTGACACTTGTTCAAGAGTCTTCCATGAGGACTGTCACATCCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108037 83 + 106825570 GAGTGTGAGGTGTGCCGGGACGGAGGGGAGCTGTTCTGTTGTGACACTTGTTCAAGAGTCTTCCATGAAGACTGTCACATCGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778289 83 + 158406734 GAGTGCGAGGTTTGCCGGGACGGAGGGGAACTGTTCTGTTGCGACACTTGTTCAAGAGTCTTCCATGAGGACTGCCACATCCC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25112 83 + 18451090 GAGTGTGAGGTTTGCCGGGAAGGAGGGAAGCTGTTCTGTTGTGACACTTGTTCAAGAGTCTTCCATGAGGACTGCCACATCCC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858509 83 - 32117204 GAATGTGAGGTGTGCCGGGATGGAGGGTTTCTATACTGCTGTGACACTTGTTCCAGAGCCTTCCATGAAGACTGTCATATCCC i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18986791 82 - 263237078 GAATGTGAGGTGTGCTGCAAAGG-GGCTCGCTTCTCCGCTGTGACACTTGCCCACGATTCTTTCACGAGGACTGCCACATCCC i oviAri1.chr2 I 52124 C 0 s canFam3.chr25 42524264 83 + 51628933 GAGTGTGAGACGTGCCGGGACGGAGGAGAGCTGTTTTGCTGTGATACTTGTTCGAGATCTTTTCATGAGGACTGTCACATCCC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080914 83 - 2169676 GTGTGTGAGACGTGCCGGGATGGAGGACAGCTGTTCTGCTGTGATACTTGTTCCAGATCTTTTCATGAGGACTGTCACATCCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888436 83 + 84719076 ATATGTGAGATGTGCCGGGATGGAGGATGGCTGTTCTGCTGTGATACTTGCTCGAGATCTTTTCATGAGGACTGTCACATCCC i equCab2.chr6 C 0 C 0 s monDom5.chr2 530365535 83 - 541556283 GACTGTTTCGTGTGTGCAGAGGAAGGCTACCTCTTCTGCTGTGATTCATGTCCCAAATCCTTCCATGAGAACTGCCATATTCC i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 61898 83 + 214398 GAGTGCTTCGTGTGTACAGATGGAGGTAAACTGTTCTGCTGTGACTCCTGTCCCAGATCCTTCCATGGGGACTGCCACATCCC i sarHar1.chr4_GL857037_random C 0 C 0 s ornAna1.chr7 32349040 83 + 40039088 GAGTGTGCCGTCTGTAGGAATGGGGGGATGCTGATCTGCTGTGACTCGTGTCCCAATTCATTTCACGAAGACTGCCACATCCC i ornAna1.chr7 C 0 I 1698 e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=15548.000000 s mm10.chr1_GL456221_random 147764 3 + 206961 AAC s rn5.chr9 92392793 3 + 121549591 AGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176083 3 - 10418462 ACC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174736 3 + 243199373 GCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553192 3 + 247518478 GCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601358 3 + 131632457 ACC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722199 3 + 135000294 GCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693768 3 + 6458163 GCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108120 3 + 106825570 GCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778372 3 + 158406734 ACC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25195 3 + 18451090 ACC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858592 3 - 32117204 TCC i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18986873 3 - 263237078 ACC i oviAri1.chr2 C 0 C 0 s canFam3.chr25 42524347 3 + 51628933 ACC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1080997 3 - 2169676 ACC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888519 3 + 84719076 GCC i equCab2.chr6 C 0 C 0 s monDom5.chr2 530365618 3 - 541556283 CAC i monDom5.chr2 C 0 I 1636 s sarHar1.chr4_GL857037_random 61981 3 + 214398 TGC i sarHar1.chr4_GL857037_random C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=178420.000000 s mm10.chr1_GL456221_random 147767 27 + 206961 AGTGGAAGCTGAGATGTGAGTGGGATG s rn5.chr9 92392796 27 + 121549591 AGTGGAAGCTGAGGTGTAAGTGGGGTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176086 23 - 10418462 AGCAAAGATTGAG----GAGTGAGATG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174739 27 + 243199373 TGTGGAAGCTGAGAGGTAAGTGACATG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553195 27 + 247518478 TGTGGAAGCTGAGAGGTAAGTGACATG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601361 27 + 131632457 TGTGGAAAGTGAGAAGTAAGTGACATG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722202 27 + 135000294 TGTGGAAAGTGAGAAGTAAGTGACATG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693771 27 + 6458163 CGTGGAAGCTGAGAGGTAAGTGACATG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108123 27 + 106825570 TGTGGAAACTGAGAGGTGAGTGACATG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778375 27 + 158406734 TGTGGAAACTGAGAAGTGAGTGACATG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25198 27 + 18451090 TGTGGAAACTGAGAAGTGAGTGACATG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858595 27 - 32117204 TGTAGAAATTGAGCAGTGAGTATCATC i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18986876 27 - 263237078 CTCGGAGGCTGAGAGGTTAGTGAGACG i oviAri1.chr2 C 0 I 630 s canFam3.chr25 42524350 27 + 51628933 TGTGGAAACTGAGAGGTTTGTGAGATG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081000 27 - 2169676 TGTGGAAACTGAGAGGTTTGTGAGATG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888522 27 + 84719076 TGTGGAAACTCAGAGGTTCGTGCGATG i equCab2.chr6 C 0 C 0 s sarHar1.chr4_GL857037_random 61984 26 + 214398 TGTTTCACAGGAGAA-TGGGTGAGATG i sarHar1.chr4_GL857037_random C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=-20169.000000 s mm10.chr1_GL456221_random 147794 7 + 206961 GGATC--CC- s rn5.chr9 92392823 7 + 121549591 TGATC--CC- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176109 7 - 10418462 TGATT--CC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174766 7 + 243199373 CAGGC--GT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553222 7 + 247518478 CAGGC--GC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601388 7 + 131632457 CAGGC--AC- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722229 7 + 135000294 CAGGC--GC- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693798 7 + 6458163 CAGGT--GC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108150 7 + 106825570 CAGGC--GC- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778402 7 + 158406734 CAGGT--GC- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25225 7 + 18451090 CAGGC--GC- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858622 9 - 32117204 CAGTCCTGT- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524377 4 + 51628933 -----ATGT- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081027 4 - 2169676 -----AAGT- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888549 4 + 84719076 -----CAGC- i equCab2.chr6 C 0 C 0 s sarHar1.chr4_GL857037_random 62010 7 + 214398 -AGAT--TCC i sarHar1.chr4_GL857037_random C 0 I 1917 e ornAna1.chr7 32349123 1698 + 40039088 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=70612.000000 s mm10.chr1_GL456221_random 147801 22 + 206961 TTCTC-TGTCTCCTAG-TA------CCCCC s rn5.chr9 92392830 23 + 121549591 TTCTC-TGTCTCCTAGATA------CCCTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176116 27 - 10418462 TTCTC-TCTCTCCTGC-TAGGAGT-CCTTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174773 28 + 243199373 CTCTCTTTTTGTCCTT-TAAGGGA-TCTTC i hg19.chr2 C 0 I 1 s panTro4.chr2B 235553229 28 + 247518478 CTCTCTTTTTGTCCTT-TAAGGGA-CCTTC i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119601395 27 + 131632457 CTCTC-TTTCATCCTT-TAAGGGA-CCTTC i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122722236 27 + 135000294 CTCTC-TTTCATCCTT-TAAGGGA-CCTTC i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3693805 28 + 6458163 CTCTCTTTTTGTCCTT-TAAGGGA-CCTTC i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94108157 27 + 106825570 CTCTC-CTTCCTCCTT-TAAGGGA-CCTTC i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146778409 27 + 158406734 CTCTC-TTTCATCCTT-TAAGGGA-CCTTC i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 25232 28 + 18451090 CTCTC-TTTCGTCCTT-TAAGGGACCCTTC i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28858631 27 - 32117204 CTGTT-TTCCCTCCTT-CTATGGA-CCCTT i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42524381 27 + 51628933 CTCCC-CCACTCCAAT-TAGGAAC-CCTTC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081031 27 - 2169676 CCCCC-CCACCCCAGT-TAGGGAG-CCTTC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888553 27 + 84719076 CCCCG-TCCGTCCTAT-TAGCAAT-GCTTC i equCab2.chr6 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 135875 418 + 176633 I a score=2076.000000 s mm10.chr1_GL456221_random 147823 3 + 206961 GCC s rn5.chr9 92392853 3 + 121549591 AGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176143 3 - 10418462 CCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174802 2 + 243199373 -AC i hg19.chr2 I 1 C 0 s panTro4.chr2B 235553258 2 + 247518478 -AT i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119601423 2 + 131632457 -AC i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122722264 2 + 135000294 -AC i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3693834 2 + 6458163 -AC i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94108185 2 + 106825570 -GC i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146778437 2 + 158406734 -AC i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 25261 2 + 18451090 -AC i saiBol1.JH378144 I 1 C 0 s micMur1.scaffold_3075 136293 2 + 176633 -TC i micMur1.scaffold_3075 I 418 I 144 s otoGar3.GL873532 28858660 2 - 32117204 -TC i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42524408 3 + 51628933 CCC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081058 3 - 2169676 CCC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888580 3 + 84719076 TTC i equCab2.chr6 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I a score=62979.000000 s mm10.chr1_GL456221_random 147826 9 + 206961 TTGTCATAT s rn5.chr9 92392856 9 + 121549591 TTGGTGTAC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176146 9 - 10418462 CTGCCATGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174804 9 + 243199373 CTGCCATGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553260 9 + 247518478 CTGCCATGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601425 9 + 131632457 CTGCCATGC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722266 9 + 135000294 CTGCCATGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693836 9 + 6458163 CTGCCATGC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108187 9 + 106825570 CTGCCATGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778439 9 + 158406734 CTGCCATGT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25263 9 + 18451090 CTGCCATGC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858662 9 - 32117204 CTGCCATGT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524411 9 + 51628933 CTGCCATAG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081061 9 - 2169676 CTGCCATAG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888583 9 + 84719076 TTGCCATGC i equCab2.chr6 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136295 144 + 176633 I a score=399664.000000 s mm10.chr1_GL456221_random 147835 114 + 206961 GCATCATCCTTATGGAGTGGTAGTG-TGGGTCTTGAGGTGGGAAACACAAGG--------------------------GCTCT--TAACAGATACCAAACAGGAAGACCCAGAGAGCTGTCTCAAGATGCTGTCAGCAAAAGG s rn5.chr9 92392865 113 + 121549591 ACAACATCCT-GTGGAGTGGTAGCC-TGGGTCTTGAGGTGGGAAACACAAGG--------------------------GCTCT--TAACAGGTACCAAACAGGAAGACCCAGGGAGCTGTTTCAAGATGCTGTCAGCAAGAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176155 109 - 10418462 ACACTTGCCC--TGCAGTGTTCCTCTTGGGTCTCGATGAGGAATGAGCAGAG--------------------------ATCCTAGCGACCAGGATCTAGCAGCATGATTCAGAGGGCTATTGAAAGATGCTGC------AATA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174813 114 + 243199373 GCACTCTCCA-GCAGAGTGCCGGCT-TGTGTCTAGATGGGGAAAGAGCAGGT--------------------------TCATCGGGTACTGGGACCCAGCAGTGTGATCCAGAGAGCAGTG-GGAGACGCTGGCAGCAGGAGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553269 114 + 247518478 GCACTCCCCA-GCAGAGTGCCGGCT-TATGTCTAGATAGGGAAGGAGCAGGT--------------------------TCATTGGGTACTGGGACCCAGCAGTGTGATCCAGAGAGCAGTG-GGAGATGCTGGCAGCAGGAGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601434 114 + 131632457 GCACTCTCCA-GCAGAGTGCCAGCT-TGTATCTAGATAGGGAAGGAGCAGGT--------------------------TCATCGGGTACTGGGACCCAGCAGTGTGATCCAGAGAGCAGTG-GGAGACGCTGGCAGTAGGAGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722275 114 + 135000294 GCACTCTCCA-GCAGAATGCCTGCT-TGTGTCTAGATGGGGAAGGAGCAGGT--------------------------TCATCGGGTACTGGGACCCAGCAGTGTGATCCAGAGAGCAGTG-GGAGATGCTGGCAGCAGGAGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693845 114 + 6458163 GTACTCTCCA-GCAGAGTGCCTGCT-TGTGTCTAGATGGGGAAGGAGCAGGT--------------------------TCATCGGGTACTGGGACTCAGCAGTGTGATCCAGAGAGCAGTG-GGAGACGCTGGCAGCAGGAGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108196 113 + 106825570 GCACTCTCCA-GCAGAGCGCCCACT-TGTGTCTAGATGGGGAAGGAGCAGGT--------------------------TCGTCGGGTACTGGGACCCAGCAGTGTG-TTCAGAGAGCAGCG-GGAGACGCTGGCAGCAGGAGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778448 114 + 158406734 GCTCTCCCCA-GCAGAGTGCCTGCT-TGTGTTTAGCTGGGGAAGGAGCAGGT--------------------------TCCTTGGGTACTGGAACCCAGCAGTGTGATCCAGAGAGCAGTG-GGAGATGCTGGCAGCAGGAGG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25272 114 + 18451090 GCTCTCCCCA-GCAGAGTGCCTGCT-TGTGTTTAGCTGGGGAAGGAGCAGGT--------------------------TCCTTGGGTACTGGGACCCAGCAGTGTGATCCAGAGAGCAGTG-GGAGACGCTGGCAGCAGGAGG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858671 115 - 32117204 GCACTCCCCCTGAAGAGTGCCTGC--TGTGTCTAGGTTGGGAAGGAGCTGGC--------------------------TGGGTAGGTCCCAGGACCCAGCAGTATCACCCAGAGAGCTGTGTGAAGGTACTGGCAGCAGGAGG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524420 114 + 51628933 GAGCTCCCCCTGTGGAGTTCCTACT-TCCGTCCAGGCAGAGAAAGAACAGGG--------------------------CCAGATGTA--TGAGGTCCAGCTGTATGATCCAGAGAGCTGGTTAAAGACACTGGCAGCATGAGG i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1081070 99 - 2169676 GAGGAACCTATGT----------------GTCCAGGCAGAGAAAGAGCAGGG--------------------------TCGGACGTA--CGGGGTCCAGCAGTATGATCCAGAGAGCTGTTTAAAGACACTGGTAGCACGAGA i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17888592 110 + 84719076 ACACTCCCTTTGCGGTGTTCCTACT-TGTGTCTGTATGAGGAAAGAGCAGGG--------------------------CCGTAGATA--TGA-GTCCAGCAGTGTGATCCAGAGACCTGTTTAACGATGCTG---GCACAGGG i equCab2.chr6 C 0 I 1 s xenTro3.GL172813 783503 118 + 2080551 -----------GCAGCATCCTTATG-GGAATGGAAATGATACAAAAGCTGAGAAAAATATATTTTTTTCTTTTAGAAATCACTCAACAAACGGACTAAAAATCACACTACGGAAGGCTGTACATAAATGT------------- i xenTro3.GL172813 N 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e felCat5.chrC1 212447241 537 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136295 144 + 176633 I a score=47472.000000 s mm10.chr1_GL456221_random 147949 12 + 206961 -----------TTAATGTTCTCT s rn5.chr9 92392978 12 + 121549591 -----------GGCGTGTTCTCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176264 12 - 10418462 -----------TCAATATTCTCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174927 12 + 243199373 -----------TTAATGTCCTCT i hg19.chr2 C 0 I 3 s panTro4.chr2B 235553383 12 + 247518478 -----------TTAATGTTCTCT i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119601548 12 + 131632457 -----------TAAATGCTCTCT i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122722389 12 + 135000294 -----------TTAATGTTCTCT i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3693959 12 + 6458163 -----------TTAATGCTCTCT i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94108309 12 + 106825570 -----------TTCATGTTCTCT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778562 12 + 158406734 -----------TTAATGTTCTCT i calJac3.chr6 C 0 I 3 s saiBol1.JH378144 25386 12 + 18451090 -----------TTAACGTTCTCT i saiBol1.JH378144 C 0 I 2 s otoGar3.GL873532 28858786 12 - 32117204 -----------TGGAAATCCTTT i otoGar3.GL873532 C 0 I 3 s felCat5.chrC1 212447778 10 + 221441202 -----------ACACTGTTCT-- i felCat5.chrC1 I 537 I 377 s canFam3.chr25 42524536 12 + 51628933 -----------ATGCTGTTCTTT i canFam3.chr25 I 2 I 4 s ailMel1.GL192536.1 1081171 12 - 2169676 -----------ATGCTGTTCTTT i ailMel1.GL192536.1 I 2 I 3 s equCab2.chr6 17888703 12 + 84719076 -----------CTCCTGTTCTTT i equCab2.chr6 I 1 I 4 s xenTro3.GL172813 783621 21 + 2080551 ACCATTACCCCTTGGTGTTTC-- i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e papHam1.scaffold13267 63770 3138 + 66950 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136295 144 + 176633 I a score=5966.000000 s mm10.chr1_GL456221_random 147961 3 + 206961 CTG s rn5.chr9 92392990 3 + 121549591 GCG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176276 3 - 10418462 GTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174942 3 + 243199373 CTC i hg19.chr2 I 3 C 0 s panTro4.chr2B 235553398 3 + 247518478 CTC i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119601563 3 + 131632457 CTC i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122722404 3 + 135000294 CTC i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3693974 3 + 6458163 CTC i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94108321 3 + 106825570 GTG i rheMac3.chr12 C 0 I 3 s papHam1.scaffold13267 66908 3 + 66950 CTC i papHam1.scaffold13267 I 3138 N 0 s calJac3.chr6 146778577 3 + 158406734 CTC i calJac3.chr6 I 3 C 0 s saiBol1.JH378144 25400 2 + 18451090 -TC i saiBol1.JH378144 I 2 C 0 s otoGar3.GL873532 28858801 3 - 32117204 CTG i otoGar3.GL873532 I 3 C 0 s canFam3.chr25 42524552 2 + 51628933 -TT i canFam3.chr25 I 4 I 1 s ailMel1.GL192536.1 1081186 2 - 2169676 -TA i ailMel1.GL192536.1 I 3 I 1 s equCab2.chr6 17888719 2 + 84719076 -TC i equCab2.chr6 I 4 I 1 s xenTro3.GL172813 783642 3 + 2080551 CTG i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136295 144 + 176633 I a score=-3156.000000 s mm10.chr1_GL456221_random 147964 1 + 206961 -T s rn5.chr9 92392993 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176279 1 - 10418462 -C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174945 1 + 243199373 -T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553401 1 + 247518478 -T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601566 1 + 131632457 -T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722407 1 + 135000294 -T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693977 1 + 6458163 -T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108327 1 + 106825570 -T i rheMac3.chr12 I 3 C 0 s calJac3.chr6 146778580 1 + 158406734 -T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25402 1 + 18451090 -T i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858804 1 - 32117204 -C i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524555 1 + 51628933 -T i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1081189 1 - 2169676 -G i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17888722 1 + 84719076 -T i equCab2.chr6 I 1 C 0 s xenTro3.GL172813 783645 1 + 2080551 G- i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136295 144 + 176633 I a score=-3340.000000 s mm10.chr1_GL456221_random 147965 1 + 206961 -T s rn5.chr9 92392994 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176280 1 - 10418462 -A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174946 1 + 243199373 -C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553402 1 + 247518478 -C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601567 1 + 131632457 -C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722408 1 + 135000294 -C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693978 1 + 6458163 -C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108328 1 + 106825570 -C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778581 1 + 158406734 -C i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25403 1 + 18451090 -C i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 136439 1 + 176633 -C i micMur1.scaffold_3075 I 144 I 14 s otoGar3.GL873532 28858805 1 - 32117204 -C i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524556 1 + 51628933 -C i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081190 1 - 2169676 -C i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888723 1 + 84719076 -T i equCab2.chr6 C 0 C 0 s xenTro3.GL172813 783646 1 + 2080551 A- i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26323440 569 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I a score=8592.000000 s mm10.chr1_GL456221_random 147966 4 + 206961 A-GGG- s rn5.chr9 92392995 4 + 121549591 A-GGA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176281 5 - 10418462 ACCGG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174947 4 + 243199373 A-GGG- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553403 4 + 247518478 A-GGG- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601568 4 + 131632457 A-GGG- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722409 4 + 135000294 A-GGG- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693979 4 + 6458163 A-GGG- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108329 4 + 106825570 A-GGG- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778582 4 + 158406734 A-GGG- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25404 4 + 18451090 A-GGG- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28858806 4 - 32117204 A-GGG- i otoGar3.GL873532 C 0 I 501 s canFam3.chr25 42524557 4 + 51628933 -TGGG- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081191 4 - 2169676 -TGGG- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888724 4 + 84719076 -GGGG- i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26324009 3 + 30916457 --GGG- i myoLuc2.GL429770 I 569 I 8 s xenTro3.GL172813 783647 4 + 2080551 --AGGT i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136440 14 + 176633 I a score=-31883.000000 s mm10.chr1_GL456221_random 147970 9 + 206961 ----AGCCATCTC s rn5.chr9 92392999 9 + 121549591 ----AGCCATGTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176286 9 - 10418462 ----AGATACCTC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174951 7 + 243199373 ------ACACCTC i hg19.chr2 C 0 I 1 s panTro4.chr2B 235553407 7 + 247518478 ------ACACCTC i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119601572 7 + 131632457 ------ACACCTC i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122722413 7 + 135000294 ------ACACCTC i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3693983 7 + 6458163 ------ACACCTC i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94108333 6 + 106825570 ------AC-CCGC i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146778586 7 + 158406734 ------ATGCCTC i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 25408 7 + 18451090 ------ACACCTC i saiBol1.JH378144 C 0 I 1 s canFam3.chr25 42524561 1 + 51628933 --------A---- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081195 1 - 2169676 --------A---- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888728 1 + 84719076 --------A---- i equCab2.chr6 C 0 C 0 s xenTro3.GL172813 783651 9 + 2080551 ATTAAGATG---- i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e otoGar3.GL873532 28858810 501 - 32117204 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26324012 8 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 65789 3495 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136440 14 + 176633 I a score=-6126.000000 s mm10.chr1_GL456221_random 147979 2 + 206961 -TC s rn5.chr9 92393008 2 + 121549591 -TC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176295 2 - 10418462 -TT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174959 1 + 243199373 -T- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235553415 1 + 247518478 -T- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119601580 1 + 131632457 -T- i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122722421 1 + 135000294 -T- i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3693991 1 + 6458163 -T- i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94108340 1 + 106825570 -T- i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146778594 1 + 158406734 -T- i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 25416 1 + 18451090 -T- i saiBol1.JH378144 I 1 C 0 s micMur1.scaffold_3075 136454 1 + 176633 -T- i micMur1.scaffold_3075 I 14 C 0 s vicPac1.scaffold_4435 69284 1 + 111236 -T- i vicPac1.scaffold_4435 I 3495 I 1 s canFam3.chr25 42524562 1 + 51628933 -T- i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1081196 1 - 2169676 -T- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17888729 1 + 84719076 -T- i equCab2.chr6 C 0 I 1 s xenTro3.GL172813 783660 2 + 2080551 TT- i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e otoGar3.GL873532 28858810 501 - 32117204 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26324012 8 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I a score=-1366.000000 s mm10.chr1_GL456221_random 147981 2 + 206961 CT- s rn5.chr9 92393010 2 + 121549591 CT- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176297 2 - 10418462 CG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174960 2 + 243199373 CT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553416 2 + 247518478 CG- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601581 2 + 131632457 CT- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722422 2 + 135000294 CT- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693992 2 + 6458163 CT- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108341 2 + 106825570 CT- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778595 2 + 158406734 CT- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25417 2 + 18451090 CT- i saiBol1.JH378144 C 0 C 0 s vicPac1.scaffold_4435 69286 1 + 111236 G-- i vicPac1.scaffold_4435 I 1 I 2346 s canFam3.chr25 42524564 2 + 51628933 CT- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1081198 2 - 2169676 CT- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17888731 2 + 84719076 CT- i equCab2.chr6 I 1 C 0 s xenTro3.GL172813 783662 2 + 2080551 -TG i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e otoGar3.GL873532 28858810 501 - 32117204 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26324012 8 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136455 0 + 176633 C a score=11132.000000 s mm10.chr1_GL456221_random 147983 2 + 206961 GA s rn5.chr9 92393012 2 + 121549591 GA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176299 2 - 10418462 GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174962 2 + 243199373 GA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553418 2 + 247518478 GA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601583 2 + 131632457 GA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722424 2 + 135000294 GA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693994 2 + 6458163 GA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108343 2 + 106825570 GA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778597 2 + 158406734 GA i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25419 2 + 18451090 GG i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 136455 2 + 176633 GG i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28859311 2 - 32117204 CT i otoGar3.GL873532 I 501 C 0 s canFam3.chr25 42524566 2 + 51628933 GA i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1081200 2 - 2169676 GA i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17888733 2 + 84719076 GA i equCab2.chr6 C 0 I 1 s xenTro3.GL172813 783664 2 + 2080551 TA i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26324012 8 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I a score=-5005.000000 s mm10.chr1_GL456221_random 147985 1 + 206961 -T s rn5.chr9 92393014 1 + 121549591 -T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176301 1 - 10418462 -G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174964 1 + 243199373 -T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553420 1 + 247518478 -T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601585 1 + 131632457 -T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722426 1 + 135000294 -T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693996 1 + 6458163 -T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108345 1 + 106825570 -T i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778599 1 + 158406734 -T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25421 1 + 18451090 -T i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 136457 1 + 176633 -G i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28859313 1 - 32117204 -G i otoGar3.GL873532 C 0 C 0 s xenTro3.GL172813 783666 1 + 2080551 G- i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e canFam3.chr25 42524568 1 + 51628933 I e ailMel1.GL192536.1 1081202 1 - 2169676 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e myoLuc2.GL429770 26324012 8 + 30916457 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e equCab2.chr6 17888735 1 + 84719076 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I a score=9616.000000 s mm10.chr1_GL456221_random 147986 5 + 206961 ATAAA-- s rn5.chr9 92393015 5 + 121549591 ATAAA-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176302 5 - 10418462 ATGCA-- i speTri2.JH393335 C 0 I 9 s hg19.chr2 231174965 5 + 243199373 ATGCT-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553421 5 + 247518478 ATGCT-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601586 5 + 131632457 ATGCT-- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722427 5 + 135000294 ATGCT-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3693997 5 + 6458163 ATGCT-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108346 5 + 106825570 ATGCT-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778600 5 + 158406734 ACGCT-- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25422 5 + 18451090 ATGCT-- i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 136458 5 + 176633 ATGCC-- i micMur1.scaffold_3075 C 0 C 0 s otoGar3.GL873532 28859314 5 - 32117204 GTGAC-- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524569 3 + 51628933 --GCT-- i canFam3.chr25 I 1 I 3 s ailMel1.GL192536.1 1081203 3 - 2169676 --GCT-- i ailMel1.GL192536.1 I 1 I 3 s equCab2.chr6 17888736 3 + 84719076 --GCC-- i equCab2.chr6 I 1 I 3 s myoLuc2.GL429770 26324020 3 + 30916457 --ACA-- i myoLuc2.GL429770 I 8 N 0 s xenTro3.GL172813 783667 5 + 2080551 --ACAAA i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I a score=10159.000000 s mm10.chr1_GL456221_random 147991 2 + 206961 GG s rn5.chr9 92393020 2 + 121549591 GG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176316 2 - 10418462 GA i speTri2.JH393335 I 9 C 0 s hg19.chr2 231174970 2 + 243199373 GA i hg19.chr2 C 0 I 8 s panTro4.chr2B 235553426 2 + 247518478 GA i panTro4.chr2B C 0 I 8 s gorGor3.chr2B 119601591 2 + 131632457 GA i gorGor3.chr2B C 0 I 8 s ponAbe2.chr2b 122722432 2 + 135000294 GA i ponAbe2.chr2b C 0 I 8 s nomLeu2.GL397366 3694002 2 + 6458163 GA i nomLeu2.GL397366 C 0 I 8 s rheMac3.chr12 94108351 2 + 106825570 GA i rheMac3.chr12 C 0 I 8 s calJac3.chr6 146778605 2 + 158406734 GA i calJac3.chr6 C 0 I 7 s saiBol1.JH378144 25427 2 + 18451090 GA i saiBol1.JH378144 C 0 I 8 s micMur1.scaffold_3075 136463 2 + 176633 GA i micMur1.scaffold_3075 C 0 I 779 s otoGar3.GL873532 28859319 2 - 32117204 AG i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42524575 2 + 51628933 AG i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1081209 2 - 2169676 GG i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17888742 2 + 84719076 TA i equCab2.chr6 I 3 C 0 s xenTro3.GL172813 783672 2 + 2080551 AA i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I a score=200576.000000 s mm10.chr1_GL456221_random 147993 73 + 206961 ------CTGGGT--------CCTTTGCCTAAACACCACTACTG-CCTTTTCTCAAAGTTGTATACTAAAGCCTCTTGTCCAA--AAGATT s rn5.chr9 92393022 71 + 121549591 ------CTGGG---------CCTTTGCCTACACTCCGCTACAG-CCTTTTCTCAAAGTTGTGCACCAAAGCCTCTCGTTCAA--A-GATT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176318 73 - 10418462 ------CTGGGT--------CCTTAGCCTACATACTATAATTATCCTTTCTTCAAAGTTTTGCAGCAGGGACTTATGTCCAT--G-GATT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231174980 63 + 243199373 ------TTGGGGA-------CCTTTGCCTACATACCGGCATTGTCCTTTCCTTGAAGTTTTGCAGCTGGGT-------------G-GGTT i hg19.chr2 I 8 C 0 s panTro4.chr2B 235553436 63 + 247518478 ------TTGGGGA-------CCTTTGCCTACATACTGGTATTGTCCTTTCCTTGAAGTTTTGCAGCTGGGT-------------G-GGTT i panTro4.chr2B I 8 C 0 s gorGor3.chr2B 119601601 63 + 131632457 ------TTGGGGA-------CCTTTGCCTACATACTGGCATTGTCCTTTCCTTGAAGTTTTGCAGCTGGGT-------------G-GGTT i gorGor3.chr2B I 8 C 0 s ponAbe2.chr2b 122722442 76 + 135000294 ------TTGGGGA-------CCTTTGCCTACATACTGGTATTGTCCTTTCCTTGAGGTTTTGCTTTAGGGTCTCCTGTCCCAGGG-GGTT i ponAbe2.chr2b I 8 C 0 s nomLeu2.GL397366 3694012 63 + 6458163 ------TTGGGGA-------CCTTTGCCTACATACTGGCATTGTCCTTTCCTTCAAGTTTTGCAGCTGGGT-------------G-GGTT i nomLeu2.GL397366 I 8 C 0 s rheMac3.chr12 94108361 64 + 106825570 ------CTGGGGAC------CCTTTGCCTACATACTGGCCTTGTCCTTTCCTTCAAGTTTTGCAGCAGGGT-------------G-GGTT i rheMac3.chr12 I 8 C 0 s calJac3.chr6 146778614 77 + 158406734 ------TTGGGGAC------CCTTTGCCTATATACTGGTATTGTCCTTTCCTTCAAGTTTTGCAGCAAGGTCTCCTGTCCAAAGG-GGCG i calJac3.chr6 I 7 C 0 s saiBol1.JH378144 25437 77 + 18451090 ------TTGGGGAC------CCTTTGCCTATATACTGGTATTGTCCTTTCCTTCAAGTTTTGCAGCAAGGTCTCCTGTCCAAGGA-GACT i saiBol1.JH378144 I 8 C 0 s otoGar3.GL873532 28859323 67 - 32117204 -------------ACTGCC-CCTCTGCCTACATA------TTGCCCTTTCCTCCAACTTTTGCAGCAGAGACTCCTG--CAAGGG-AGTT i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42524577 70 + 51628933 ------CTGGGT--------CCCTTGCCTATATACTGCTACTG----TCCCTTCAAGTTTTCCAGCCCAGACCTCTGCTCACA-G-AGGT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081211 64 - 2169676 ------CTGGAT--------CCCTTGCTTTCACACTGCT----------TCAACAAGTTTTCCAGCCTGGGCTCCTGTTCACA-G-AGGT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888744 74 + 84719076 ------TTGGAT--------CCTTTGCCTACATGCTGCTGCTGTGCTTTCCTAGAAATTTTCTAGCATGGACTCCTGTTCACA-G-GGAT i equCab2.chr6 C 0 C 0 s xenTro3.GL172813 783674 86 + 2080551 AAGGACCTGGAGAATAAATGCTTTTG--GAGTTTCAGCTCTCGCTGTTTGCTTTATAATTCATGTGCTTATCCCTTTAGAGTA-G-AATT i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=321.000000 s mm10.chr1_GL456221_random 148066 1 + 206961 G s rn5.chr9 92393093 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176391 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175043 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553499 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601664 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722518 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694075 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108425 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778691 1 + 158406734 T i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25514 1 + 18451090 T i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859390 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524647 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081275 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888818 1 + 84719076 C i equCab2.chr6 C 0 C 0 s choHof1.scaffold_56718 5678 1 - 9327 A i choHof1.scaffold_56718 N 0 N 0 s xenTro3.GL172813 783760 1 + 2080551 G i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=100187.000000 s mm10.chr1_GL456221_random 148067 38 + 206961 GGGG-TAGAGTAC---ACTACTT--------TTGCTTTCTATGTACTTAT-- s rn5.chr9 92393094 41 + 121549591 GGGA-TAGAATAC---CCTGGTTACT-----TTTGTTTCTATGTACTTGT-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176392 42 - 10418462 GAAA-TGGGAAATG--ACAGGTTTTT-----TTTTTTCTTCTGTGCTTAG-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175044 38 + 243199373 GAGA-CAAGAAAC---ACCAGTTGTT-----TATATTT---TGTGCTTAT-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553500 38 + 247518478 GAGA-CAAGAAAC---ACCAGTTGTT-----TATATTT---TGTGCTTAT-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601665 38 + 131632457 GAGA-CAAGAAAC---ACCAGTTGTT-----TATATTT---TGTGCTTAT-- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722519 38 + 135000294 AGGA-AAAGAAAC---ACCAGTTGTT-----TATATTT---TGTGCTTAT-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694076 38 + 6458163 GAGA-CCAGAAAC---ACCAGTTGTT-----TATATTT---TGTGCTTAT-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108426 38 + 106825570 GAGA-CAAGAAGC---ACCAGTTGTT-----TATATTT---TGTGCTTAT-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778692 22 + 158406734 GGG-------AAC------------------TATATTT---TGGGCTTAT-- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25515 38 + 18451090 GGGG-CAAGAAAC---ACCAGTTGTT-----TATATTT---TGTGCTTAT-- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859391 39 - 32117204 GAGAGCAGAAAAC---ACCAGTTATT-----TATATTT---TGTGCCTAT-- i otoGar3.GL873532 C 0 I 6 s canFam3.chr25 42524648 31 + 51628933 GGGA--------C---ACCAGTTGTT-----TGTGTTC---TGCACTTTT-- i canFam3.chr25 C 0 I 6 s ailMel1.GL192536.1 1081276 31 - 2169676 GGGA--------C---ACAAGCTGTT-----TGTGTTC---TGTGCTTTT-- i ailMel1.GL192536.1 C 0 I 6 s equCab2.chr6 17888819 31 + 84719076 GAAA--------T---GCCAGTGGTT-----TCTATTC---TGTGCTTAT-- i equCab2.chr6 C 0 I 6 s xenTro3.GL172813 783761 39 + 2080551 -------------CTGAAAGATTGTTATAGCAATATCTTGGTGTGCAAATAT i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=2466.000000 s mm10.chr1_GL456221_random 148105 2 + 206961 GA s rn5.chr9 92393135 2 + 121549591 GA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176434 2 - 10418462 TC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175082 2 + 243199373 TC i hg19.chr2 C 0 I 4 s panTro4.chr2B 235553538 2 + 247518478 TC i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119601703 2 + 131632457 TC i gorGor3.chr2B C 0 I 4 s ponAbe2.chr2b 122722557 2 + 135000294 TC i ponAbe2.chr2b C 0 I 4 s nomLeu2.GL397366 3694114 2 + 6458163 TC i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94108464 2 + 106825570 TC i rheMac3.chr12 C 0 I 4 s calJac3.chr6 146778714 2 + 158406734 TC i calJac3.chr6 C 0 I 4 s saiBol1.JH378144 25553 2 + 18451090 TC i saiBol1.JH378144 C 0 I 4 s xenTro3.GL172813 783800 2 + 2080551 AC i xenTro3.GL172813 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e otoGar3.GL873532 28859430 6 - 32117204 I e canFam3.chr25 42524679 6 + 51628933 I e ailMel1.GL192536.1 1081307 6 - 2169676 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e equCab2.chr6 17888850 6 + 84719076 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=88042.000000 s mm10.chr1_GL456221_random 148107 86 + 206961 AAGAAAAA--TAAGCATGACTGACTACTTCCCACATTTCA---CCACC-TTGCAA-----------TGGACTCTTGGAAGTTCAAGATTCCCAGAATT-TTTTT---- s rn5.chr9 92393137 85 + 121549591 AAGAAAAA---ATGCATGACTGACTACTTCCCACATT-CA---CCAGA-TTGTAA-----------GGGGCTCTAGGAAGTTCAAGGTTACCAGAAATATTTTT---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176436 76 - 10418462 AGGAAAGAAATAAACACAACTGG----TTCCCACTTTTCA---TTACG-CTTTAA-----------TGGGC----ATGGACCCAAGATCACCAGGAGT-----T---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175088 55 + 243199373 AAGACAGG---AAGCACGA------------------------------TCTCAT-----------TGGGCTGTTGGAGGCCCGAGGTCCCTGGGGCT-----G---- i hg19.chr2 I 4 C 0 s panTro4.chr2B 235553544 55 + 247518478 AAGACAGG---AAGCACGG------------------------------TCTCAT-----------TGGGCTGTTGGAGGCCCAAGGTCCCTGGGGCT-----G---- i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119601709 55 + 131632457 AAGACAGG---AAGCACGG------------------------------TCTCAC-----------TGGGCTGTTGGAGGCCCGAGGTCCCTGGGGCT-----G---- i gorGor3.chr2B I 4 C 0 s ponAbe2.chr2b 122722563 52 + 135000294 AAGACAGG---AAGCACGG------------------------------TTTCA--------------GGCTGATGGAGGCCCGAAGTCCCTGGAGTT-----G---- i ponAbe2.chr2b I 4 C 0 s nomLeu2.GL397366 3694120 52 + 6458163 AAGACAGG---AAGCACGG------------------------------TCTCA--------------GGCTGATGGAGGTCCGAAGTCCCCGGAGCT-----G---- i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94108470 55 + 106825570 AAGACAGG---AAGCACAG------------------------------TCTCAT-----------TGGGCTGATGGAGGCCCGAGGTCCCTGGAGCT-----G---- i rheMac3.chr12 I 4 C 0 s calJac3.chr6 146778720 55 + 158406734 AAGACAGG---AAGCATGA------------------------------TCCCAT-----------TGGGCTGATGGAGGCCCGAGGTCCCTGGAGCT-----G---- i calJac3.chr6 I 4 C 0 s saiBol1.JH378144 25559 55 + 18451090 AAGACAAG---TGGCATGG------------------------------TCTCAT-----------TTGGTTGATGGAGGCGCGAGGTCCCTGGAGCT-----G---- i saiBol1.JH378144 I 4 C 0 s otoGar3.GL873532 28859436 71 - 32117204 AAGACAGG---AAGCACGG---------TTCCACATTTCA---CTTTGTTCTCAT-----------TGGGCTCATAGAGGCTGGAGATCCC--GAGGT-----T---- i otoGar3.GL873532 I 6 C 0 s canFam3.chr25 42524685 78 + 51628933 AAAGCAGT---AAACATGG---CCTGCTTCGTACATTTTA---CCACAGGCTCAA-----------TGGGCTGATAGAGG-CCAGGGTCCCCAAGGGT-----T---- i canFam3.chr25 I 6 C 0 s ailMel1.GL192536.1 1081313 77 - 2169676 AAGGCAGG---AAGCGTGG---CCTGGTTCATGCATTTTA---CCACGGGCTCAG-----------C-GGCTGATAGAGG-CCTGGATCCCCAGGGCT-----G---- i ailMel1.GL192536.1 I 6 C 0 s equCab2.chr6 17888856 79 + 84719076 AAGGCAGG---AAACCTGG---CCAGGTTCCCTCATCTTG---CCACATTCTCAA-----------CAGGCTGATGGAAGCCCCAGGCCCCCAGGGGT-----T---- i equCab2.chr6 I 6 C 0 s xenTro3.GL172813 783802 100 + 2080551 AGTATAAA--TAGGTATGATTGTGCACTTTCTACATTTCAGGGGCAAA-TTTCATCTTTGAGATCGTGCTTTGTTGCAATTTCTACAATCACAGGGTT-----TATTT i xenTro3.GL172813 C 0 N 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=421878.000000 s mm10.chr1_GL456221_random 148193 85 + 206961 GAAGACCATTTTACTGTGC--------------CTAGTCTCCTTGTGCTCCCAGCAACCTCTGTCAGGAAATGGGGACCTAC-CACTCATTA---CAAAGGCC s rn5.chr9 92393222 99 + 121549591 GAAGACCATTTTACTATGCTTAGATTTAATAGCCTAGTCTCCTTTTGCTCCCAGCCACCTCTGTCAGGAAATGGGGACCCAC-CACTCATCA---CAAAGCCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176512 90 - 10418462 AAAGCCCCATTTCTTATACTTGAGCCTCGTTGGCAGGGCTCCTTGTATTCCCA-------CTGG-GGGAAAGGAGATCCTAT-TAGTCAACA---TGACA-CT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175143 97 + 243199373 AAAACCCAGTTTCTGAAACTCAGGCCTGACAGACAGGGTTCCCTGTGCTCCCAGCAGCT-CAGACAGAGAAAGGAGAGTCCA-CACTCACGG---TGACA-CC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553599 97 + 247518478 AAAACCCAGTTTCTGAAACTCAGGCCTGACAGACAGGGTTCCTTGTGCTCCCAGCAGCT-CAGACAGAGAAAGGAGAGTCCA-CACTCACGG---TGACA-CT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601764 97 + 131632457 AAAACCCAGTTTCTGAAACTCAGGCCTGACAGACAGGGTTCCTTGTGCTCCCAGCAGCT-CAGACAGAGAAAGGAGAGTCCA-CACTCATGG---TGACA-CT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722615 97 + 135000294 AAAGCCCAGTTTCTGACACTCGGGCCTGGCAGGCAGGACTCCTTGTGCTCCCAGCAGCT-CAGACAGGGAAAGGATAGTCCA-CACTCACGG---TGACA-CC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694172 97 + 6458163 AAAGCCCAGTTTCTGACACTCAGACCTAGCAGGCAGGGCTCCTTGTGCTCCCAGCAGCT-CAGACAGGGAAAGGATAGTCCA-CACTCACAG---TGACA-CC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108525 97 + 106825570 AAAGCCCAGTTTCTGAAACTCAGGCCTGGCAGGCAGGGCTGCTTGTGCTCCCAGCAGCT-CAGACAGGAAAAGGAGAGTCCA-CACTCATGG---TGACA-CC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778775 96 + 158406734 AAAATCCAGTTTCTGATGCTCAGGCCTGGTAAGCAGGGCTCCTTGTGCTCTCAGCAGCT-CAGACAGAGAAAGGAGAG-CCA-CACTCACAG---TGACA-CC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25614 96 + 18451090 AAAGCCCCGTTTCTGAAACTCAGGCCTGGCAGGCAGGGCTCCTTGTGctcccagcagct-cagacaggaaaaggagag-cca-cgctcacag---tgaca-cc i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859507 100 - 32117204 AAAGCTCACTTTCCCATACTCAGGCCTGGCAATCAGGGCTCCCTGTGCCCCCAGCAGGT-CAGGCAGGGAAAGGAGAAAGAG-AACTCACCTCTCTGGTA-CC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524763 96 + 51628933 AAGACCCATTTT-TGACACTTGGGTGTGGTGGGCAGGGCTCTTTGTGCTCCTAGCAGCT-CCAGTGAGAAAAAGAGAGCCCATCACTC-CCC---TGTCA-CC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081390 97 - 2169676 AAGGCCCAGTTT-TGACACTTGGGTGTGACAGGCAGGGCGCCTTGTGCTCCCAGCAACT-CCGGTGGGGAAAGGAGAGCCCACCACTCACCC---TGACA-CA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17888935 77 + 84719076 AAGGCCCAGTTTCCAAAATTCAGGCCTGGCAGGCAG---------------------CT-CAGACGGGGAAAGGAGAGCCCACCACTCACCC---TGACA-CC i equCab2.chr6 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 22416 6360 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=4660.000000 s mm10.chr1_GL456221_random 148278 1 + 206961 A s rn5.chr9 92393321 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176602 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175240 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553696 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601861 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722712 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694269 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108622 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778871 1 + 158406734 A i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25710 1 + 18451090 a i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859607 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524859 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081487 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889012 1 + 84719076 C i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 28776 1 - 513109 A i dasNov3.JH581855 I 6360 I 1409 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=38831.000000 s mm10.chr1_GL456221_random 148279 10 + 206961 CTTTCCA-AGG s rn5.chr9 92393322 10 + 121549591 CTTTCCA-AGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176603 10 - 10418462 CTTTCCG-AGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175241 10 + 243199373 CCTTCCT-CAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553697 10 + 247518478 CCTTCCT-CAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601862 10 + 131632457 CCTTCCT-CCG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722713 10 + 135000294 CCTTCCT-GAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694270 10 + 6458163 CCTTCGT-GAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108623 11 + 106825570 CCTTCCGAGAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778872 10 + 158406734 CCTTCCT-CAG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25711 10 + 18451090 ccttcct-cag i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859608 10 - 32117204 CCTTCCT-CAG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524860 10 + 51628933 CCCTCCA-CAC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081488 10 - 2169676 CCCTCCG-CGC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889013 10 + 84719076 CCCTCCA-CCC i equCab2.chr6 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_10686 28466 12931 + 49512 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=3803.000000 s mm10.chr1_GL456221_random 148289 4 + 206961 GCTG s rn5.chr9 92393332 4 + 121549591 ACAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176613 4 - 10418462 ACTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175251 4 + 243199373 ACTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553707 4 + 247518478 ACTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601872 4 + 131632457 ACTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722723 4 + 135000294 GCTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694280 4 + 6458163 GCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108634 4 + 106825570 GATT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778882 4 + 158406734 GCTT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25721 4 + 18451090 gctt i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859618 4 - 32117204 ACCA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524870 4 + 51628933 ACCA i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1081498 4 - 2169676 ACTG i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17889023 4 + 84719076 ACGG i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_9232 51823 3 + 60856 ACC- i pteVam1.scaffold_9232 I 6219 I 2910 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=2079.000000 s mm10.chr1_GL456221_random 148293 1 + 206961 C s rn5.chr9 92393336 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176617 1 - 10418462 A i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175255 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553711 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601876 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722727 1 + 135000294 C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694284 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108638 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778886 1 + 158406734 C i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25725 1 + 18451090 c i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859622 1 - 32117204 C i otoGar3.GL873532 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e canFam3.chr25 42524874 1 + 51628933 I e ailMel1.GL192536.1 1081502 1 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e equCab2.chr6 17889027 1 + 84719076 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=63778.000000 s mm10.chr1_GL456221_random 148294 25 + 206961 -C-------TCCTG--CCA-TGACATTGACAGGGGG s rn5.chr9 92393337 25 + 121549591 -C-------TCCTG--CCA-TGACACTGAAAGGAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176618 18 - 10418462 -CATCCTGTTTCTG--CCA-TG-------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175256 33 + 243199373 -CTGCCTGCTGCTA--CCACTGATGCGAGGGAAAGG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553712 33 + 247518478 -CTGCCTGCTGCTA--GCGCTGATGTGAGGGAAAGG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601877 33 + 131632457 -CTGCCTGCTGCTA--CCACTGATGCGAGGGAAAGG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722728 33 + 135000294 -CCTCCCGCTGCTA--CCACTGATGCGAGGGAAAGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694285 33 + 6458163 -CCTCCCGCTGCTA--CCACTGATGCGAGGGAAAGG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108639 33 + 106825570 -CTGCCTGCTGCTA--CCACTGATGCGAGGGAAAGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778887 33 + 158406734 -CCACCTGCTGCTA--CCAATGACGCAAGGGAAAGG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25726 33 + 18451090 -ccgcctgctgcta--ccagtgatgtgagggaaagg i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859623 30 - 32117204 -CCACCTGCTGCCA--CCACTGATGGGAGGG---GG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524875 28 + 51628933 GTCCCCTGTTGCCA--CCCTCAATGGGAGG------ i canFam3.chr25 I 1 I 3 s ailMel1.GL192536.1 1081503 28 - 2169676 GCCCCCTGTTGCCA--GCCTTGATGGGAGG------ i ailMel1.GL192536.1 I 1 I 3 s equCab2.chr6 17889028 26 + 84719076 CTCCC----TGCTAATCCCTCAGTGGAAAG------ i equCab2.chr6 I 1 I 3 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212447788 377 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=-16295.000000 s mm10.chr1_GL456221_random 148319 5 + 206961 -CTGAC s rn5.chr9 92393362 5 + 121549591 -CTGGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176636 2 - 10418462 --TG-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175289 5 + 243199373 -CCAAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553745 5 + 247518478 -CCAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601910 5 + 131632457 -CCAAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722761 5 + 135000294 -CCAGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694318 5 + 6458163 -CCAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108672 5 + 106825570 -CCAAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778920 5 + 158406734 -CCAAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25759 5 + 18451090 -ccAAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859653 5 - 32117204 -CCATC i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212448165 5 + 221441202 CTCAT- i felCat5.chrC1 I 377 I 1905 s canFam3.chr25 42524906 5 + 51628933 GTCAT- i canFam3.chr25 I 3 I 3 s ailMel1.GL192536.1 1081534 5 - 2169676 GTCGT- i ailMel1.GL192536.1 I 3 I 3 s equCab2.chr6 17889057 5 + 84719076 GTCAT- i equCab2.chr6 I 3 I 3 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 28970 657 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=7383.000000 s mm10.chr1_GL456221_random 148324 3 + 206961 AAC s rn5.chr9 92393367 3 + 121549591 AAC i rn5.chr9 C 0 C 0 s hg19.chr2 231175294 3 + 243199373 GGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553750 3 + 247518478 GGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601915 3 + 131632457 GGC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722766 3 + 135000294 GGC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694323 3 + 6458163 GTC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108677 3 + 106825570 GGC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778925 3 + 158406734 GGC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25764 3 + 18451090 GAC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859658 3 - 32117204 AGC i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 29627 1 - 63237 --T i turTru2.JH486691 I 657 I 189 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e canFam3.chr25 42524911 3 + 51628933 I e ailMel1.GL192536.1 1081539 3 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18986903 630 - 263237078 I e speTri2.JH393335 4176638 0 - 10418462 C e equCab2.chr6 17889062 3 + 84719076 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=313043.000000 s mm10.chr1_GL456221_random 148327 81 + 206961 CTAAGATTCTAAGTG-GGGTCCTTCAGTGTCTGAGAA---------CCCTTGCCCCAGAT-AGACTGTCAGCC----ATTCACGAA---AGCATAATA-G s rn5.chr9 92393370 82 + 121549591 TTAAGACCCTAAGTG-GGGTCCTTCAGAGTCCAGGAA---------CCCTTGCCCCAGATGAGTCTGTCAGTC----ATTCCCAAA---AGCATAATG-G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176638 68 - 10418462 --------------G-GGATCTTGCACACTCTGGGAG-------------TGTTCTAACT-AGCATATCAACCAACTATTCCTTAA---AGGAGGACATG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175297 94 + 243199373 TGGAGACCCCATGTGTGAATCTTGCATACTTTGGGAGGTGTTCCCCTCCCTCCCATGACTGAGCCCATCAGCC----ATTCCTGAA-GGAAGACAGTG-G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553753 94 + 247518478 TGGAGACCCCATGTGTGAATCTTGCATACTTTGGGAGGTGTTCCCCTCCCTCCCATGACTGAGGCTATTGGCC----ATTCCTGAA-GGAAGACAGTG-G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119601918 93 + 131632457 TGGAGACCCCATGTGTGAACCTTGCATACTTTGGGAGGTGTTCCCCT-CCTCCCATGACTGAGGCTATTGGCC----ATTCCTGAA-GGAAGACAGTG-G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722769 94 + 135000294 TGGAGACCTCATGTGCAGTTCTTGGATACTCTGGGAGGTGTTCCCCTCCCTCCCATGACTGAGCCCATCAGCC----ATTCCTGAA-GGAAGACAGTG-G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694326 94 + 6458163 TGGAGACCTCATGTGCGAATCTTGCATACTCTGGGAGGTGTTCCCCTCCCTCCCATGACTGAGGCTATTGGCC----ATTCCTGAA-GGAAGACAGTG-G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108680 94 + 106825570 TGGAGATCCCATGTGTGAATCCTGCATACTCTGGGAGGTATTCTCCTCCCTCCCATGGCTGAGGCCATTGGCC----ATTCCTGAA-GGAAGACAGTG-G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146778928 83 + 158406734 TGGAGACCCCACGTGCAGTTCT-----------GAAGGTGTTGCCCTCCCTCCCATGGCTGAGGCCATCGGCT----ATTCCTGAA-GGAGGACAGTG-G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25767 94 + 18451090 TGGAGACCCCATGTGCAGTTCTTGGATACTCTGGGAGGTGTTCTCCTGCCCCCCATAGCTGAGCCCATCAGCC----ATTCCTGAA-GGAAGACAGTA-G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859661 86 - 32117204 ACGAGACTTCAGGTG-AAGGCTAGGGTGCTCTGAAAGGTGG-------CCACCCGTGGCTGAGCCCCTTGCCC----ATTTCTGAA-GGAGGGTAGTG-G i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42524914 94 + 51628933 CTCAGGCCCTACATGTGCATCTTGGAGGCTCTGGGAGGTGTCTCCTT-CATCTCCCAGCTGTGTCCATCGGCC----ATGCTTGAAAGGAGGCCAGTG-G i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1081542 93 - 2169676 CTCAGGCCCCACATGGG-GTCTTGGAGACTCTGGGAGGTGTCCCCTT-CATCTCCCAGCTGTGTCCACCGGCC----ATGCCTGAAAGGAGGACGGTG-G i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17889065 94 + 84719076 CTCAGACCCCATGTGAGGGGCTTGGGGATGCTGGGAGGTGTTCCCTT-CATCTTCCAGCTGTATCCATAAACC----ATTCCCAAAAGGAGGACAGGG-A i equCab2.chr6 I 3 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18986903 630 - 263237078 I e turTru2.JH486691 29628 189 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=173363.000000 s mm10.chr1_GL456221_random 148408 29 + 206961 CAGGCATAGG--AACAGTGGCTGTTTTCACT s rn5.chr9 92393452 29 + 121549591 CAGGTTCGGG--AACAGTGGGCGCTTTCAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176706 29 - 10418462 CAGCTATGGG--AACAGTAGCTATTTCCAGG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175391 29 + 243199373 TAGCCACAGG--AACGGTGGCCATTTCCAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553847 29 + 247518478 TAGCCACAGG--AACGGTGGCCATTTCCAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119602011 29 + 131632457 TAGCCACAGG--AACGGTGGCCATTTCCAAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722863 29 + 135000294 CAGCCACAGG--AACGGTGGCCATTTCCAGG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694420 29 + 6458163 TAGCCACAGG--AACGGTGGCCATTTCCAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108774 29 + 106825570 CAGCCACAGG--AACGGTGGCCGTTTCCAGG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779011 21 + 158406734 CAGCCACA----------GGGTATTTCCAGG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25861 28 + 18451090 CAGCCACA-A--AATGGTGGCCATTTCCAGG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859747 29 - 32117204 CAGCCACAAG--AAAGGTGGCTGTTTCCAGG i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18987533 31 - 263237078 CAGGAAAAGGAAAACGGTGGCTGTTTCCAAG i oviAri1.chr2 I 630 C 0 s canFam3.chr25 42525008 29 + 51628933 CAGCCCTAGG--AACAGGGGTTGTTTCCAGG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081635 29 - 2169676 CCACCGTGGG--AACAGGGGCTGTTTCCAGG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889159 29 + 84719076 CAGCTGTAGG--AACAGTGGCTGTTTTCAGG i equCab2.chr6 C 0 C 0 e ornAna1.chr7 32349123 1698 + 40039088 I e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29628 189 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=20161.000000 s mm10.chr1_GL456221_random 148437 5 + 206961 GGTCA s rn5.chr9 92393481 5 + 121549591 GGTCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176735 5 - 10418462 GGCCG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175420 5 + 243199373 CTCCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553876 5 + 247518478 GTCCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119602040 5 + 131632457 CTCCC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722892 5 + 135000294 GTCCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694449 5 + 6458163 GTCCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108803 5 + 106825570 GTCCC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779032 5 + 158406734 GTCCC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25889 5 + 18451090 GTCCC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859776 5 - 32117204 GGCTT i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18987564 5 - 263237078 GACCT i oviAri1.chr2 C 0 C 0 s canFam3.chr25 42525037 5 + 51628933 GGACT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081664 5 - 2169676 GGCCT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889188 5 + 84719076 GGCCT i equCab2.chr6 C 0 C 0 s ornAna1.chr7 32350821 5 + 40039088 GACCT i ornAna1.chr7 I 1698 C 0 e sarHar1.chr4_GL857037_random 62017 1917 + 214398 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29628 189 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=474066.000000 s mm10.chr1_GL456221_random 148442 60 + 206961 TGTCCTCTGC-TCACTTCCTGTCCA-------AC-CTTTCAGAACAC-----CATGGA---------GTTGCATCTTCTGTAG s rn5.chr9 92393486 60 + 121549591 CATTCTCTGC-TAAGTTCATGTCCA-------AT-CTTTCAGAACAC-----CATGGA---------GTTGCATCTTCTGTAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176740 60 - 10418462 TGTTCTCTGC-TCACTTTATGCACA-------AT-CTCCCAGGACCC-----CGTGGA---------GTTGCATTTTCTGCAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175425 59 + 243199373 TGCCCTCTGC-TCAC-CCATGTCCA-------AT-CTCTCAGGACCC-----CGTGGA---------ATTGCATCTTCTGCAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553881 59 + 247518478 TGCCCTCTGC-TCAC-CCATGTCCA-------AT-CTCTCAGGACCC-----CATGGA---------ATTGCATCTTCTGCAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119602045 59 + 131632457 TGCCCTCTGC-TCAC-CCATGTCCA-------AT-CTCTCAGGACCC-----CGTGGA---------ATTGCATCTTCTGCAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722897 59 + 135000294 TGCCCTCTAC-TGAC-CCATGTCCA-------AT-CTCTTAGGACCC-----CGTGGA---------GTTGCATCTTCTGCAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694454 59 + 6458163 TGCCCTCTGC-TCAC-CCATGTCCA-------AT-CTCTCAGGACCC-----CGTGGA---------GTTGCATCTTCTGCAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108808 59 + 106825570 TGCCCTCTGC-TCAC-CCATGTCCA-------AT-CTCTCAGGACCC-----CGTGGA---------GTTGCATCTTCTGCAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779037 59 + 158406734 TGCCCTCTGC-TCAC-CTAAGTCCA-------AT-CTCTCAGGACCC-----CGTGGA---------GTTGCATCTTCTGCAG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25894 59 + 18451090 TGCCCTCTGC-TCAC-TTAAGTTCA-------AT-CTCTCAGGACCC-----CGTGGA---------GCTGCATCTTCTGCAG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859781 59 - 32117204 TGCCCTCTGC-TCAG-CTATGTCCA-------AC-CTCTCAGAAACC-----CATGGA---------GCTGCATCTTCTGCAG i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18987569 58 - 263237078 TGTCCT-CGC-TCAT-TTATGCCCG-------GC-CCCGCAGGAGCC-----CATGGA---------GTTGCACCTTCTGCAG i oviAri1.chr2 C 0 C 0 s canFam3.chr25 42525042 57 + 51628933 TGCCCT-TGC-TCAC-TTATGCCCA-------AC-CTCT-AGGAGCC-----CGTGGA---------GCTGCACCTTCTGCAG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081669 58 - 2169676 GGCCCT-TGC-TCAC-TTACGCCCG-------AC-CTCTCAGGAGCC-----CGTGGA---------GTTGCACCTTCTGCCG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889193 58 + 84719076 TGCCCT-TGC-TCAC-TTATGCTCA-------AC-CTCTCAGGAACC-----CGTGGA---------GTTGCACCTTCTGCAG i equCab2.chr6 C 0 C 0 s sarHar1.chr1_GL834637_random 1821912 80 - 2638213 TTTCCTCTGC-TTAC-CTTTCTCTGCATCTTTAT-TTCTCAGCACTCGTTATCTTGGGAGGCAAGCTGGTACGTCTAGTATAG i sarHar1.chr1_GL834637_random n 1917 I 1 s ornAna1.chr7 32350826 62 + 40039088 TTTCCTTGGCTTCACTTTCTGTCCC-------TCATTTTCAGCCCAG-----AATGGA---------TCTGCACCTATTGCCG i ornAna1.chr7 C 0 C 0 e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29628 189 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=4653.000000 s mm10.chr1_GL456221_random 148502 1 + 206961 A s rn5.chr9 92393546 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176800 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175484 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553940 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119602104 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722956 1 + 135000294 G i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694513 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108867 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779096 1 + 158406734 G i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25953 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859840 1 - 32117204 C i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 29817 1 - 63237 A i turTru2.JH486691 I 189 I 628 s oviAri1.chr2 18987627 1 - 263237078 A i oviAri1.chr2 C 0 I 3 s canFam3.chr25 42525099 1 + 51628933 G i canFam3.chr25 C 0 I 3 s ailMel1.GL192536.1 1081727 1 - 2169676 G i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17889251 1 + 84719076 G i equCab2.chr6 C 0 I 3 s ornAna1.chr7 32350888 1 + 40039088 A i ornAna1.chr7 C 0 C 0 e sarHar1.chr1_GL834637_random 1821992 1 - 2638213 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=755040.000000 s mm10.chr1_GL456221_random 148503 111 + 206961 ATG---------------CAGTCCTTAGGAAGTCAACCGAGTCTTCCAGAATCTGAGATACTGCAGAGGGA--------------GAT--GGCTCCCCAGGAACAGTTGGTGAGTCA-CT-GTGAACCA--ATCTTTTCTCCTTTT-- s rn5.chr9 92393547 112 + 121549591 ATG---------------CAGTCCTTAGGAAGTCAACAGAGTCTTCCAGAATCTGAGATACTGCAGAGGGA--------------GAT--GGTGCCCCAGGAACAGTTGGTGAGTTA-CT-GTGAACCCC-ATATTTTCTCCTTTC-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176801 112 - 10418462 ATG---------------GGCTCCTTAGACAGTCAAGAGAGTCATCGGGAATCTGAGATCCTAGAGAGGCA--------------GAT--GCAGCCCGAGGAACAGCTGGTGAGTCC-AC-GGAATCCCC-AAGCCTTCTCGTTTC-- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175485 116 + 243199373 ATG------------AAGGAGTCTCCGGGAAGCCAACAGTGTTGTCAGGAATCTGAGGTCCTGGAGAGGCA--------------GAT--GTGTCCTGAGGAACAGTTGGTAAATCAGAT-GCAAACCCC-AAGCCTTCTCCTTTC-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235553941 116 + 247518478 ATG------------AAGGAGTCTCCGGGAAGCCAACAGTGTTGTCAGGAATCTGAGGTCCTGGAGAGGCA--------------GAT--GTGTCCTGAGGAACAGTTGGTAAATCAGAT-GCAAACCCC-AAGCCTTCTCCTTTC-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119602105 116 + 131632457 ATG------------AAGGAGTCTCCGGGAAGCCAACAGTGTTGTCAGGAATCTGAGGTCCTGGAGAGGCA--------------GAT--GTGTCCTGAGGAACAGTTGGTAAATCAGAT-GCAAACCCC-AAGCCTTCTCCTTTC-- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122722957 116 + 135000294 ATG------------AACAAGTCTCCAGGAAGCCAACAGTGTTGTCAGGAATCTGAGGTCCTGGAGAGGCA--------------GAT--GTGTCCTGAGGAACAGTTGGTAAATCAGAT-GCAAACCCT-AAGCCTTCTCCTTTC-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694514 116 + 6458163 ATG------------AAGGAGTCTTCAGGAAGCCAACAGTGTTGTCAGGAATCTGAGGTCCTGGAGAGGCA--------------GAT--GTGTCCTGAGGAACACATGGTAAAGCAGAT-GCAAACCCC-AAGCCTTCTCCTTTC-- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108868 116 + 106825570 ATG------------AAGGAGTCTTCAGGAAGCCAACAGTGTTGTCAGGAATCTGAGGTCCTGGAGAGGCA--------------GAT--GTGTCCGCAGGAACAGTTGGTAAGTCAGAT-GCAAACCCC-AAGCCTTCTCCTTTC-- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779097 116 + 158406734 ATG------------AAGGAGTCTGCAGGAAGTCAACAGTGCTGTCAGGAATCTGAGGTCCTGGAGAGGCA--------------GAT--GTGTCCTGAGGAACAGTCGGTGAGTCGGAT-ACAAAGCCC-AAGCCTTCTCCTTTC-- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 25954 116 + 18451090 ATG------------AAGGAGTCTTCAGGAAGCCAACAGTGCTGTCAGGAATCTGAGGTCCTGGAGAGGCA--------------GAT--GTGTCCTGAGGAACAGTTGGTGAGTCAGAT-GCAATGCCC-AAGCCTTCTCCTTTC-- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859841 116 - 32117204 ATG------------AAGGAGTTTCCAGAAGATCAACAATGTTATCAGGAATTTGAGATCCTGGAGAAACA--------------GAT--GGGGCCAGAGGAACAGCTGGTGAGTCTGAT-GCACATCCC-CAGCCCTCTGCTTTC-- i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18987631 112 - 263237078 ---------------AAGGAGTCTTCAGGAAACCAGCAGGGTCTCCAGGAATCTGAGGTTCGGGCAAGGTC--------------CAT--GCAGCCCGAGGAGCAGCTGGTGAGTGGGAT-GGGGAC-CC-AAGCCTTCCCCCTTC-- i oviAri1.chr2 I 3 C 0 s canFam3.chr25 42525103 108 + 51628933 ------------------GAGTCTTTGGGAAGGCAGCAGTGTCACAGGGAGTCTGAGGTCCTTGAGAGGCA--------------GAT--GCAACCCGAGGAGCAGCTGGTGAGTTGGGT-GTCAACCCT-AAGTCT--TCCTTAC-- i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1081731 113 - 2169676 ---------------AAGGAGTCTTCGGGAAGGCAGCAGCGTCACGGGGAATCTGAGGTCCTGCAGAGGCA--------------GAT--GCAGCCTGAGGAGCAGATGGTGAGTTGGGT-GCCCACCCC-AAGCCTTCTCCTTAC-- i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17889255 113 + 84719076 ---------------AAGGAGTCTTCAGGAAGCCAGCAGTGTCACGGGGAGCCTGAGGTCCTGGTGAGGCA--------------GAT--GGGGCCTGAGGAGCAGTTGGTGAGTCAGAT-TCAAACTCC-AAGCCTTTTCCTTTC-- i equCab2.chr6 I 3 C 0 s sarHar1.chr1_GL834637_random 1821993 96 - 2638213 ---------------TTTGTATCCCTATCAAACCGCCA--------------CAAAGATCCAGAAAATACACCAGACTTAATTCTGATTAAGAACACCAAGAAAAGTTAGTGAGTCA---------------------tttttttC-- i sarHar1.chr1_GL834637_random I 1 C 0 s ornAna1.chr7 32350889 132 + 40039088 ATGGAGAAAGCTGAGAAGAGATGTCCACCAAACGTGGCGCGTCATCCAGAGTTGCAGGTCCTAAAGATGAA--------------GAT--GCTTCCGGAAGAACTCTTGGTGAGTCTGATCGTTAACTCTGAAAGCTACTCCTCTTGT i ornAna1.chr7 C 0 I 1733 e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=33307.000000 s mm10.chr1_GL456221_random 148614 18 + 206961 TCCT------GGATAAGGACAGAC s rn5.chr9 92393659 18 + 121549591 CCCT------GGATAAGGACAAAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176913 24 - 10418462 CCTTCTCTTGTGAGAAACACCAAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175601 24 + 243199373 CCCTCACACGTGAGAACCATGAAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554057 24 + 247518478 CCCTCACACGTGAGAACCATGAAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119602221 24 + 131632457 CCCTCACACGTGAGAACCATGAAT i gorGor3.chr2B C 0 T 91883 s ponAbe2.chr2b 122723073 24 + 135000294 CCCTCACACGTGAGAATCATGAAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694630 24 + 6458163 CCCTCACACGTGAGAATCATGAAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94108984 24 + 106825570 CCCTCACACGTGAGCACCATGAAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779213 24 + 158406734 CCCTTACACTTGAAAAGCATGAAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26070 24 + 18451090 CCCTCACATGTGAGAAGCAGGAAC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859957 24 - 32117204 CTTTCTTACACGAGAACCACAGAC i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18987743 9 - 263237078 CCC---------------TCAAAC i oviAri1.chr2 C 0 C 0 s canFam3.chr25 42525211 23 + 51628933 CCCTAATATGTGAGAAG-ACCAAC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081844 23 - 2169676 CCCGGACACGTGAGCAG-TCCAAC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889368 21 + 84719076 CAC--ACACAGGAACGT-TCAAAC i equCab2.chr6 C 0 C 0 s sarHar1.chr1_GL834637_random 1822089 20 - 2638213 AGGGCAGTTTAGGGAGAGAC---- i sarHar1.chr1_GL834637_random C 0 C 0 e ornAna1.chr7 32351021 1733 + 40039088 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=83588.000000 s mm10.chr1_GL456221_random 148632 25 + 206961 AGGCTTGGAGCCAGAAG-AATAGCAT s rn5.chr9 92393677 25 + 121549591 AGTCTTGGAGCCAGAAG-AATAGCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176937 25 - 10418462 AGGCCTGGGGTCAGAGA-CGTGGAAC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175625 24 + 243199373 AAGCGCAAGGGCAGGGG-AAT-GTAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554081 24 + 247518478 AAGCGCAGGGGCAGGGT-AAT-GTAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119510362 24 + 131632457 AAGCGCAGGGGCAGGGG-AAT-GTAC i gorGor3.chr2B T 91883 C 0 s ponAbe2.chr2b 122723097 24 + 135000294 AAGCGCAGGGGCAGGGG-AAT-GTAC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694654 24 + 6458163 AAGCGCAGGGGCAGGGG-AAT-GTAC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109008 24 + 106825570 AAGCGCAGGGTCAGGGG-AAT-TCAC i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779237 24 + 158406734 AAGCGCAGGGTCAGGGG-AAT-GCAC i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26094 24 + 18451090 AAGCACAGCATCAGAGG-AAT-GCAC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28859981 25 - 32117204 AGGCACAGGGTCAGAGGCAAG-GCAT i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18987752 25 - 263237078 AGGCAGAGGGTCCAGGG-AAGGGCAC i oviAri1.chr2 C 0 C 0 s canFam3.chr25 42525234 25 + 51628933 AGACAAGTGTTGAAGGG-AAGGGCAC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081867 25 - 2169676 AGACAAGGGGTGAAGGG-AAGGGCGC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889389 18 + 84719076 AGGCAAAGGGTCGGGGG-A------- i equCab2.chr6 C 0 C 0 s sarHar1.chr1_GL834637_random 1822109 25 - 2638213 AGGTCTGGAACCATGAG-GATAGAAT i sarHar1.chr1_GL834637_random C 0 n 0 e ornAna1.chr7 32351021 1733 + 40039088 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=232240.000000 s mm10.chr1_GL456221_random 148657 70 + 206961 -TCACAGAGAGCCTGCTCTCACAAGCCGCAC-TCCATC---ATAGAGCTG-TCGCA----GCATAACTCCTTGGTATAAA---- s rn5.chr9 92393702 69 + 121549591 -CCA-GTATAGCCTGCTCTCCCAAGCCTCAC-CCCATC---ATTGTGCTG-CCGCA----GCATAGCCTCTAGGTATAAA---- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4176962 75 - 10418462 -TAGGAGGGAGCTTTCTCTTCCAACCCACGCTTCTGTT---ATGCTGACA-TCACA----CCAGAACATGTTTACAGAAAGAAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175649 70 + 243199373 -TGA-AAGGAGCCTGCTCTTCCGCGCCACACTTCAATG---GCACTGATA-GAACA----CCACACCTTGTTTGCACAAA---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554105 70 + 247518478 -CGA-AGGGAGCCTGCTCTTCCGCGCCACACTTCAATG---GCACTGATA-GAACA----CCACAACTTGTTTGCACAAA---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119510386 70 + 131632457 -CGA-CAGGAGCCTGCTCTTCCGCGCCACACTTCAATG---GCACTGATA-GAACC----CCACAACTTGTTTGCACAAA---- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723121 70 + 135000294 -CGA-AAGGAGCCTGCTCTTCCGCGCCACACTTCAATG---GCACTGATA-GAACA----CCACAACTTGTTTGCACAAA---- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694678 70 + 6458163 -CAA-AAGGAGCCTGCTCTTCCGCGCCACATTTCAATG---GCACTGATA-GAACA----CCACAATTTGTTTGCACAAA---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109032 69 + 106825570 --AA-AAGGAGCCTACTCTTCCGAGCCACACTTCAATC---ACACTGATA-GAACA----CCCCAATTTGTTTGCACAAA---- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779261 67 + 158406734 -CAA-A---AGTGTGCTCTTGAGAGCCACACTTTAGTT---GCACTGATA-GACCA----CTACAACTTGTTTGCAGAAA---- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26118 67 + 18451090 -CAA-A---AGTGTGCTCTTCAGAGCCACACTTCAATT---GCACTGATA-GGCCA----CTACAACTTGTTTGCAGAAA---- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860006 72 - 32117204 TCAA-AGGAAGCCTGCTCTTCTGAGCTACACTTTCATC---ACACTGATATTAACA----CCATAACTTGTTTGCTGAAA---- i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18987777 68 - 263237078 CCAA-AGAAAGCCT----------TCAGTGTCTCACTTCCGAGGATGGAG-CTTCAGCGCCCAAACGTGGAGGACAGACA---- i oviAri1.chr2 C 0 C 0 s canFam3.chr25 42525259 71 + 51628933 CCTG-AGGGAGCCCGCTCATCCAAGCCATGTCTCTATC---ATGCTGAAG-TCATC----CCAGAACTGGATTGTAAGAA---- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1081892 70 - 2169676 CCCG-AGGGAGACTGTTCATCCAAGCCATGTCTCAATC---ATGCTGAAA-TCATA----CCAGAACTGGACTGT-GGAA---- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889407 67 + 84719076 -----AGGGAGCCTGCTCTTTGGAGCCATGCCACAACC---ATGCCGAAA-CCACA----CCAGAACTTGTTCACAGAAA---- i equCab2.chr6 C 0 C 0 e ornAna1.chr7 32351021 1733 + 40039088 I e sarHar1.chr1_GL834637_random 1822134 0 - 2638213 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=22800.000000 s mm10.chr1_GL456221_random 148727 2 + 206961 AA s rn5.chr9 92393771 2 + 121549591 AA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177037 2 - 10418462 AA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175719 2 + 243199373 AA i hg19.chr2 C 0 I 4 s panTro4.chr2B 235554175 2 + 247518478 AA i panTro4.chr2B C 0 I 4 s gorGor3.chr2B 119510456 2 + 131632457 AA i gorGor3.chr2B C 0 I 4 s ponAbe2.chr2b 122723191 2 + 135000294 AA i ponAbe2.chr2b C 0 I 4 s nomLeu2.GL397366 3694748 2 + 6458163 AA i nomLeu2.GL397366 C 0 I 4 s rheMac3.chr12 94109101 2 + 106825570 AA i rheMac3.chr12 C 0 I 4 s calJac3.chr6 146779328 2 + 158406734 AA i calJac3.chr6 C 0 I 4 s saiBol1.JH378144 26185 2 + 18451090 AA i saiBol1.JH378144 C 0 I 4 s otoGar3.GL873532 28860078 2 - 32117204 AA i otoGar3.GL873532 C 0 I 4 s oviAri1.chr2 18987845 2 - 263237078 GA i oviAri1.chr2 C 0 I 1 s canFam3.chr25 42525330 2 + 51628933 AA i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1081962 2 - 2169676 AA i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17889474 2 + 84719076 AA i equCab2.chr6 C 0 I 1 s latCha1.JH128553 167487 2 - 424428 AA i latCha1.JH128553 N 0 C 0 e ornAna1.chr7 32351021 1733 + 40039088 I e sarHar1.chr1_GL834637_random 1822134 0 - 2638213 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 136465 779 + 176633 I a score=33151.000000 s mm10.chr1_GL456221_random 148729 4 + 206961 CTCA s rn5.chr9 92393773 4 + 121549591 CTCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177039 4 - 10418462 CTTA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175725 4 + 243199373 CTCA i hg19.chr2 I 4 C 0 s panTro4.chr2B 235554181 4 + 247518478 CTCA i panTro4.chr2B I 4 C 0 s gorGor3.chr2B 119510462 4 + 131632457 CTCA i gorGor3.chr2B I 4 C 0 s ponAbe2.chr2b 122723197 4 + 135000294 CTCA i ponAbe2.chr2b I 4 C 0 s nomLeu2.GL397366 3694754 4 + 6458163 CTCA i nomLeu2.GL397366 I 4 C 0 s rheMac3.chr12 94109107 4 + 106825570 CTCA i rheMac3.chr12 I 4 C 0 s calJac3.chr6 146779334 4 + 158406734 CTCA i calJac3.chr6 I 4 C 0 s saiBol1.JH378144 26191 4 + 18451090 CTCA i saiBol1.JH378144 I 4 C 0 s micMur1.scaffold_3075 137244 4 + 176633 ATAA i micMur1.scaffold_3075 I 779 I 1364 s otoGar3.GL873532 28860084 4 - 32117204 CTCA i otoGar3.GL873532 I 4 C 0 s oviAri1.chr2 18987848 4 - 263237078 TTCA i oviAri1.chr2 I 1 C 0 s canFam3.chr25 42525333 4 + 51628933 CTAA i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1081965 4 - 2169676 ATAA i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17889477 4 + 84719076 ATAA i equCab2.chr6 I 1 C 0 s latCha1.JH128553 167489 4 - 424428 CTCA i latCha1.JH128553 C 0 C 0 e ornAna1.chr7 32351021 1733 + 40039088 I e sarHar1.chr1_GL834637_random 1822134 0 - 2638213 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I a score=13847.000000 s mm10.chr1_GL456221_random 148733 5 + 206961 -----GTCAA s rn5.chr9 92393777 5 + 121549591 -----GTCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177043 5 - 10418462 -----GCCCT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175729 5 + 243199373 -----GCCAT i hg19.chr2 C 0 I 1 s panTro4.chr2B 235554185 5 + 247518478 -----GCCAT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119510466 5 + 131632457 -----GCCAT i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122723201 5 + 135000294 -----GCCGT i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3694758 5 + 6458163 -----GCCGT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94109111 5 + 106825570 -----GCCAT i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146779338 5 + 158406734 -----GCCAT i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 26195 5 + 18451090 -----GCCAC i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28860088 5 - 32117204 -----GCCAT i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42525337 5 + 51628933 -----GTTAG i canFam3.chr25 C 0 I 5 s ailMel1.GL192536.1 1081969 5 - 2169676 -----CTCAG i ailMel1.GL192536.1 C 0 I 5 s equCab2.chr6 17889481 4 + 84719076 -----GCC-A i equCab2.chr6 C 0 I 2 s latCha1.JH128553 167493 10 - 424428 GGAATCCCAA i latCha1.JH128553 C 0 C 0 e ornAna1.chr7 32351021 1733 + 40039088 I e sarHar1.chr1_GL834637_random 1822134 0 - 2638213 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18987852 0 - 263237078 C e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=278916.000000 s mm10.chr1_GL456221_random 148738 91 + 206961 ---ACAAGTTTATAACCAAGAGGCA-CTCATGTT-GGGCAGATTT-------G-CAGATGGGTTTGAGCGGCAC-CTTC----------CCCCTGGGTACATGTATAGACTCTGC------------- s rn5.chr9 92393782 90 + 121549591 ---ACAAGTTTATAACCAAGAGGCA-CTCATGTT-GGGCAAATTT-------G-CAGATGGGTTTGAATGGTGC-CTTC----------CCGA-GGGTACATGTATAGATTCTGC------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177048 77 - 10418462 -----------------------TA-CACATGTT-TGGAGAATCTTCCTGAAG-CTGGGGGGCATGAGTCATGC-TTTC----------TGTG-GGGTGAGCATATGGGTTTCTT------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175735 91 + 243199373 ---ACATGTCTGTTTCCAAGAGCCA-CACATGTT-AGAGAAACTT----GAGG-AAGAAGGGTGTGAGTTCTGT-GCTG----------TGTCT---CATGCATGTGGGCTCATT------------- i hg19.chr2 I 1 C 0 s panTro4.chr2B 235554191 91 + 247518478 ---ACATGTCTGTTTCCAAGAGCCA-TACATGTT-AGAGAAACTT----GAGG-AAGAAGGGTGTGAGTCGTGT-GCTG----------TGTCT---CATGCATGTGGGCTCATT------------- i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119510472 91 + 131632457 ---ACATGTCTGTTTCCAAGAGCCA-CACATGTT-AGAGAAACTT----GAGG-AAGAAGGGTGTGAGTCATGT-GCTC----------TGTCT---CATGCATGTGGGCTCATT------------- i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122723207 91 + 135000294 ---ACATGTCTGTTTCCAAGAGCCA-CACATGTT-AGAGAAACTT----GTGG-AAGAAGAGTGTGAGTCGTGT-GCTC----------TGTCT---CATGCATGTGGGCTCATT------------- i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3694764 91 + 6458163 ---ACATGTCTGTTTCCAAGAGCCA-CACATGTT-AGAGAAACTT----GTGG-AAGAAGGGTGTGAGTCGTGT-GCTC----------TGTCT---CATGCGTGTGGGCTCATT------------- i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94109117 91 + 106825570 ---ACATGTCTGTTTCCAAGAGCCA-CACATGTT-AGAGAAACTT----GTGG-AAGAAGGGTGTGAGTCGTGT-GCTC----------CGTCT---CATGCATGTGGGCTCATT------------- i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146779344 92 + 158406734 ---ACATGTCTGTTTCCAAGAGCCA-CGCATGTT-AGAGAAATCT----GTGG-AAGAAGGGTGTGAGTCCTGT-G--C----------TGTCTGGACATGCATGTGGACTCACT------------- i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 26201 94 + 18451090 ---ACATGTCTGTTTCTAAGAGCCA-CAAACGTT-AGAGAAACTT----GTGG-AAGAAGGGTGTGAGTCATGT-GCTC----------TGTCTGGACAGGCATGTGGGCTCACT------------- i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 28860094 67 - 32117204 ---ACATGTCTGTTTCCA----CCC-CACATGTG-GTGGAAACTC----CCTG-AAGATGGGTGTGAGTCA--------------------TCC---CTTACA-----------C------------- i otoGar3.GL873532 I 1 C 0 s oviAri1.chr2 18987852 102 - 263237078 ---ACATTCACCTCCCCA----CCACGGCACCTTGGCAGATGCAG----TCAG-AAGGCTGGT-TGTGTCTGGCTGCTCCTATGTGTGATTTCTGGGCAAAGGCTTGACCTCACT------------- i oviAri1.chr2 C 0 C 0 s canFam3.chr25 42525347 94 + 51628933 ---ACATGTCTGTTTCCAAGAACCA-AACACGTTTGGGGGAACTT----CTGG-AACACGAGTGTGAGTCATGC--CTC----------TGCCTGGGCATGTGTATGGGCTTAAT------------- i canFam3.chr25 I 5 C 0 s ailMel1.GL192536.1 1081979 94 - 2169676 ---ACATGTCTGTTTCCAAGAGCCA-AACATGTTTGGGGAAACTT----CCAG-AACACCGGTGTGAGTCACGC--CTT----------TGCCTGGGCATGTATATGGGCTTAAT------------- i ailMel1.GL192536.1 I 5 C 0 s equCab2.chr6 17889487 95 + 84719076 ---ACATGTCTGTTTCCAAGAGCCA-TAAATACTCAAGGAAACTT----CCGG-AAGACTAGTGT-AGTCATGCCTCTC----------TGCCTGGGCATGTGTATGGGCTCCTT------------- i equCab2.chr6 I 2 C 0 s latCha1.JH128553 167503 104 - 424428 ATACCTGGCTTATGTCTAAGTGGCA-GGAAAGCCCTGGCAAACCT----ACAGTAAGAAATCCAAGAGTAA----TCGC----------TAACT-----TGAACATAGTTTTACTTCaaaaaaaCTTC i latCha1.JH128553 C 0 C 0 e ornAna1.chr7 32351021 1733 + 40039088 I e sarHar1.chr1_GL834637_random 1822134 0 - 2638213 I e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=124930.000000 s mm10.chr1_GL456221_random 148829 29 + 206961 CTTTCTAAGTCACTTTG-----A--CTGAGTCCCT--T s rn5.chr9 92393872 29 + 121549591 CTTTCTACGTCACTCTG-----A--CTGACTCCCT--T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177125 32 - 10418462 CTTTTCAAGCTGCTTTT----CA--TTGACAGCCTACT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175826 32 + 243199373 CTCTCCAAGCTGCTTTT----CA--TTTACGGCCTCTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554282 32 + 247518478 CTCTCCAAGCTGCTTTT----CA--TTTATGGCCTCTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119510563 32 + 131632457 CTCTCCAAGCTGCTTTT----CA--TTTATGGCCTCTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723298 32 + 135000294 CTCTCCAAGCTGCTTTT----CA--CTTATGGCCTCTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694855 32 + 6458163 CTCTCCAAGCTGCTTTT----CA--CTTACGGCCTCTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109208 32 + 106825570 CTCTCCAAGCTGCTTTT----CA--TTTACAGCCTCTT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779436 32 + 158406734 CTCTCCACGCTGCTTTT----CA--TTTACAGCCTCTT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26295 32 + 18451090 CTCTCCATGCTGCTTTT----CA--TTTATGGCCTCTT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860161 31 - 32117204 CTATGCAAGATGGTTTT----CA--TTTAC-TCTTCTT i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18987954 34 - 263237078 TTCTCCAGACTGCATTT----TGCCTTTAAATCCCTCT i oviAri1.chr2 C 0 C 0 s canFam3.chr25 42525441 32 + 51628933 GTCTCCAAACTTCCTTT----AA--TTCACAGCCTTCT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082073 32 - 2169676 GTGTCCAAACTGCTTTT----TA--TTGACAGCCTTCT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889582 32 + 84719076 CTCCCCGAGCTGCTTTT----CA--TTCACAGCCTCCT i equCab2.chr6 C 0 C 0 s sarHar1.chr4_GL857037_random 63934 31 + 214398 -----CTGGCTTTATTTGTCTCA--TACACAAGCTTTA i sarHar1.chr4_GL857037_random I 1917 C 0 s ornAna1.chr7 32352754 29 + 40039088 CCCTCCGAG-TGCTGCT-----A--AATACATTCTTA- i ornAna1.chr7 I 1733 C 0 s latCha1.JH128553 167607 24 - 424428 -CTTTGAAGAAACCTCT----GA--CT----GCCT--- i latCha1.JH128553 C 0 C 0 e monDom5.chr2 530365621 1636 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=863375.000000 s mm10.chr1_GL456221_random 148858 83 + 206961 TT---TCTTGC-AGAAGTGTGAGTATGTTCTCTTGAGAGTCTATTGCTGTTCTGAGAGCTCCTTT-TTTTTCCAAGATGCCATATTAT s rn5.chr9 92393901 82 + 121549591 TT---TCTTTC-AGAAGTGTGAGTATGTTCTCTTGAGAGTCTATTGCTGTTCTGAGAGCTCCTTT-TTTT-CCAAGATGCCATATTAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177157 82 - 10418462 TC---TCTTGT-AGAAATGTGAGTTCCTCCTCTTGAAGGTCTATTGCTGTTCGGAGAGCTCCATT-TTTG-CCAAGGATCCACGTTAT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175858 82 + 243199373 TC---TTTTGC-AGAAATGTGAGTTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTT-TTTG-CCAAGATTCCATACTAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554314 82 + 247518478 TC---TTTTGC-AGAAATGTGAGTTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTT-TTTG-CCAAGATTCCATACTAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119510595 82 + 131632457 TC---TTTTGC-AGAAATGTGAGTTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTT-TTTG-CCAAGATTCCATACTAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723330 82 + 135000294 TC---TTTTGC-AGAAATGTGAGTTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTT-TTTG-CCAAGATTCCATACTAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694887 82 + 6458163 TC---TTTTGC-AGAAATGTGAGTTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTT-TTTG-CCAAGATTCCATACTAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109240 82 + 106825570 TC---TTTTGC-AGAAATGTGAGTTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTT-TTTG-CCAAGATTCCATACTAT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779468 82 + 158406734 TC---TTTTGC-AGAAATGTGAATTCCTCCTCTTGAAACTCTATTGCTGTTCTGAGAGCTCCTTT-TTTG-CCAAGATTCCGTATTAT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26327 82 + 18451090 TC---TTTTGC-AGAAATGTGAATTCCTCCTCTTGAAAGTCTATTGCTGTTCTGAGAGCTCCTTT-TTTG-CCAAGATTCCATATTAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860192 82 - 32117204 TC---TTTTGC-AGAAATGTGAATTCCTTCTGTTGAAAGTCTATTGCTGTTCTGAGAGTTCCTTT-TTTG-CCAAGATTCCATATTAT i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18987988 86 - 263237078 TCGTATTTTACTAGAAATGTGAGTTTCTCCTCTTGAAAGCCTACTGTCATCCACAAAGCTCATTC-TTTG-CGGAGACCCCATGTAAT i oviAri1.chr2 C 0 I 815 s canFam3.chr25 42525473 82 + 51628933 TC---TTTTGC-AGAAATGTGAGTTCATTCTCTTGAGGGTCTATTGCCATTCAGAGAGCTCCTTT-TTTT-CGAAGATTCCATATTAT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082105 82 - 2169676 TC---TTTTGC-AGAAATGTGAGTTCCTCCTCTTGAAGGTCTACTGCCATTCAGAGAGCTCCTTT-TTTT-CGAAGATTCCATATTAT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889614 82 + 84719076 TC---TTTTGC-AGAAATGTGAGTTCCTCCTCCTGACGGTCTATTGCCATTCAGAGAGCTCCTTT-TTTG-CGAAGATTCCATATTAT i equCab2.chr6 C 0 C 0 s monDom5.chr2 530367257 76 - 541556283 TT---TTCTGC-AGAAATGTGAGTTTCTTCTCCTGAGAATGTACTGTCGCATGGAAAGTGTCCCC-TTTA-CCAAAGATCCA------ i monDom5.chr2 I 1636 C 0 s sarHar1.chr4_GL857037_random 63965 76 + 214398 TC---TTCTGC-AGAAATGTGAGTATCTCCTGATGAAAATGTATTGCTGCAGAGAAAGCATGCTC-TTTG-CTACAGATCCA------ i sarHar1.chr4_GL857037_random C 0 C 0 s ornAna1.chr7 32352783 77 + 40039088 TC---TTTCGC-AGAAATGTGAGTTTCTTCTCTTGAAGATCTTTTGCCTCTATGACAGTAAGATT-TTTA-TCGAGGATCCAG----- i ornAna1.chr7 C 0 C 0 s latCha1.JH128553 167631 68 - 424428 CT---TCCTGC-AGGA--GTAAACCAGGCCTCT-------------CTGTCCTCTAAGCTCCTTTCTTTC-CCTGGGGGCCACTTCTT i latCha1.JH128553 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=73184.000000 s mm10.chr1_GL456221_random 148941 8 + 206961 TATTATGT s rn5.chr9 92393983 8 + 121549591 TATTATGT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177239 8 - 10418462 CATCGTGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175940 8 + 243199373 TATTATGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554396 8 + 247518478 TATTATGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119510677 8 + 131632457 TATTATGT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723412 8 + 135000294 TATTATGT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694969 8 + 6458163 TATTATGT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109322 8 + 106825570 TATTATGT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779550 8 + 158406734 TATTATGT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26409 8 + 18451090 TATGATGT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860274 8 - 32117204 TACTACGT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42525555 8 + 51628933 TATTATGT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082187 8 - 2169676 TATTATGT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889696 8 + 84719076 TATTATGT i equCab2.chr6 C 0 C 0 s monDom5.chr2 530367333 8 - 541556283 TGCCAGGT i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 64041 8 + 214398 CGCAATGT i sarHar1.chr4_GL857037_random C 0 C 0 s ornAna1.chr7 32352860 7 + 40039088 -AACGGGT i ornAna1.chr7 C 0 C 0 s latCha1.JH128553 167699 8 - 424428 TGTGTTGT i latCha1.JH128553 C 0 N 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18988074 815 - 263237078 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=77317.000000 s mm10.chr1_GL456221_random 148949 16 + 206961 AAGTAACGGTGGTG--------------AA- s rn5.chr9 92393991 16 + 121549591 AAGTAATGGTGGTG--------------AA- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177247 16 - 10418462 AAGTAACAGCAGAG--------------AG- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175948 15 + 243199373 AAGTAACAACAGC---------------AA- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554404 15 + 247518478 AAGTAACAACAGC---------------AA- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119510685 15 + 131632457 AAGTAACAACAGC---------------AA- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723420 15 + 135000294 AAGTAACAACAGC---------------AA- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694977 15 + 6458163 AAGTAACAACAGC---------------AA- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109330 15 + 106825570 AAGTAAAAACAGC---------------AA- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779558 15 + 158406734 AAGTAACAACAGC---------------AA- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26417 15 + 18451090 AAGTAACAACAGC---------------AA- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860282 15 - 32117204 AAGTAACAATAAC---------------AA- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42525563 15 + 51628933 AAGTAACAACAAC---------------CA- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082195 15 - 2169676 AAGTAATAACAAC---------------CA- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889704 14 + 84719076 AAGTAACAACAG----------------AA- i equCab2.chr6 C 0 C 0 s monDom5.chr2 530367341 30 - 541556283 AAGTAACAGAGATTTGAATAATAACCTCTA- i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 64049 29 + 214398 AAGTAACAGTGATTCAAATAATATTCT-TA- i sarHar1.chr4_GL857037_random C 0 C 0 s ornAna1.chr7 32352867 16 + 40039088 AAGTGACAGCTAT---------------GGA i ornAna1.chr7 C 0 I 2421 e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18988074 815 - 263237078 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=79863.000000 s mm10.chr1_GL456221_random 148965 18 + 206961 CCCCTGATCCCTGGCTTC------------------- s rn5.chr9 92394007 18 + 121549591 TCCCTGGTCACTGGCTTC------------------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177263 17 - 10418462 CCTC-GGTCACAGGCCAC------------------- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231175963 18 + 243199373 CCCATGATTACAGGCTGC------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554419 18 + 247518478 CCCATGATTACAGGCTGC------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119510700 18 + 131632457 CCCATGATTACAGGCTGC------------------- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723435 18 + 135000294 CCCATGATTACAGGCTGC------------------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3694992 18 + 6458163 CCCATGATTACAGGCTGC------------------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109345 18 + 106825570 CCCATGATTACAGGCTGC------------------- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779573 18 + 158406734 CCCATGATTACAGGCTGC------------------- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26432 18 + 18451090 CCCATGATTACAGGCTGC------------------- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860297 18 - 32117204 GCCATGATTATGGGTTGC------------------- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42525578 18 + 51628933 GCCGTGATCGCAGGCCAC------------------- i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1082210 18 - 2169676 ACCATGATTATAGGCCAC------------------- i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17889718 18 + 84719076 ACCATGATTACAGGCTGC------------------- i equCab2.chr6 C 0 C 0 s monDom5.chr2 530367371 37 - 541556283 TCTCTGAAGACCAATTGATTAACCATTCATTAAACTC i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 64078 37 + 214398 CCTCTGAGGGCCAAATTATTAAACATTCGCTAAACTC i sarHar1.chr4_GL857037_random C 0 C 0 e ornAna1.chr7 32352883 2421 + 40039088 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18988074 815 - 263237078 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=8666.000000 s mm10.chr1_GL456221_random 148983 1 + 206961 C s rn5.chr9 92394025 1 + 121549591 C i rn5.chr9 C 0 I 1 s speTri2.JH393335 4177280 1 - 10418462 C i speTri2.JH393335 C 0 I 1 s hg19.chr2 231175981 1 + 243199373 C i hg19.chr2 C 0 I 1 s panTro4.chr2B 235554437 1 + 247518478 C i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119510718 1 + 131632457 C i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122723453 1 + 135000294 C i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3695010 1 + 6458163 C i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94109363 1 + 106825570 C i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146779591 1 + 158406734 C i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 26450 1 + 18451090 C i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28860315 1 - 32117204 T i otoGar3.GL873532 C 0 I 1 s equCab2.chr6 17889736 1 + 84719076 C i equCab2.chr6 C 0 I 1 s monDom5.chr2 530367408 1 - 541556283 C i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 64115 1 + 214398 C i sarHar1.chr4_GL857037_random C 0 C 0 e ornAna1.chr7 32352883 2421 + 40039088 I e canFam3.chr25 42525596 2 + 51628933 I e ailMel1.GL192536.1 1082228 2 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18988074 815 - 263237078 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=390688.000000 s mm10.chr1_GL456221_random 148984 125 + 206961 TGATGTCTCATG----ACTGAG------A---GGGCCAT-TGTGGGATTTGTGATCTTAATCCCTG-AGGGG-CA---CAG----------------------------------------------------------GCTCTG-------TTGTTTCT---GTA-----------------GACTTTCTGGGACCCGATGGAAGGT-AAATGCTGAACCGT-GGCATTC s rn5.chr9 92394027 125 + 121549591 TGATGTCTCGTG----ACTGAG------A---GGGCCAT-TTGTGGGATTCTGATCTTACTCTTCC-AGGAG-CG---CAG----------------------------------------------------------GCTCTA-------TTGTTTCT---GTG-----------------GAGTTTCTGGGACCCCAGGGAATGT-AAATGCTGAGCCAT-GGTATTC i rn5.chr9 I 1 C 0 s speTri2.JH393335 4177282 127 - 10418462 CGATACGAGGTG----ACTCTG------A-------CAT----GGGATCTGTGATCTCAGTCCCTG-GGGCG-TGAGACAGCA--------------------------------------------------------GCCCTG-------TTGTCTTTCCATTG-----------------GATTTTATGAGAATCCATAGCAGGTCAAACACTAAACTGT-GCTAGTA i speTri2.JH393335 I 1 C 0 s hg19.chr2 231175983 155 + 243199373 TGACATTACCTG----ACCCTG------AAATGGGCCCT-CGTGAGATTTGTGATCTTAATCCCAC-GGGGC-AA---GAGCACA--------------------------CGCTGT--------CGTTAGTTGCCTTCACCTTG-------TTGTATTTCTGCTG-----------------GATTTTATGGGAATCCACAGAAGGT-AGACACTGAACTAT-GCTGGTA i hg19.chr2 I 1 C 0 s panTro4.chr2B 235554439 152 + 247518478 TGACATTACCTG----ACCCTG------AAATGGACCCT-CGTGAGATTTGTGATCTTAATCCCAT-GGGGC-AA---GAGCACA--------------------------CGCTGT--------CGTTAGTTGCCTTCACC----------TTGTATTTCTGCTG-----------------GATTTTATGGGAATCCACAGAAGGT-AGACATTGAACTAT-GCTGGTA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119510720 155 + 131632457 TGACATTACCTG----ACCCTG------AAATGGGCCCT-CGTGAGATTTGTGATCTTAATCCCAC-GGGGC-AA---GAGCACA--------------------------CGCTGT--------CTTTAGTTGCCTTCACCTTG-------TTGTATTTCTGCTG-----------------GATTTTATGGGAATCCACAGAAGGT-AGACATTGAACTAT-GCCGGTA i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122723455 155 + 135000294 TGACATTACCTG----ACCCTG------AAATGGGCCCT-CGTGAGATTTGTGATCTTAATCCCAC-GGGGC-AA---GAGCACA--------------------------CGCTGT--------CGTTAGTTGCCTTCACCTTG-------TTGTATTTCTGCTG-----------------GATTTTATGGGAATCCACAGAAGGT-AGACATTGAACTAT-GCTGGTA i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3695012 155 + 6458163 TGACATTACCTG----ACCCTG------AAATGGGCCCT-CGTGAGATTTGTGATCTTAATCCCAC-GGGGC-GA---GAGCACA--------------------------CACTGT--------CGTTAGTTGCCTTCACCTTG-------TTGTATTTCTGCTG-----------------GATTTTATGGGAATCCACAGAAGGT-AGACGTTGAACTAT-GCTGGTA i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94109365 154 + 106825570 TGACATTACCTG----ACCCTG------AAATGGGCCCT-CGTGAGATTTGTGATCTTAATCCCAT-GGAGC-AA---GAGCACA--------------------------CGCCGT--------CTTTA-CAACCTTCACCTTG-------TTGTATTTCTGCTG-----------------GATTTTATGGGAATCCACAGAAAGC-AGACATTGAACTAT-ACTGGTA i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146779593 161 + 158406734 TGACATTACCTG----ACCCTGAAAAAAAAATGGACGCT-TGTGAGATTTGTGATTTTAATCCTAT-GGAGC-AA---GAGCACA--------------------------AGTTGT--------CATTAGTTACCTTCACTTTG-------TTGCATTTCTGCTG-----------------GATTTTATGGGAAGCCACAGAAGGT-AGAGATTGAACTGT-GCTGGTA i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 26452 149 + 18451090 TGACATTGCCTG----------------AAATGGGCACT-TGTGAGATTTGTGATCTTAGTCCCGT-GGAGC-AA---GAGCACA--------------------------GGCCGT--------CATTAGTTACCTTCACTTTG-------TTGTATTTCTGCTG-----------------GATTTCATGGGACACCACAGAAGGT-AGAGATTGAACTGT-GCTGGTA i saiBol1.JH378144 I 1 C 0 s otoGar3.GL873532 28860317 127 - 32117204 TGATATCACATA----GCCCTG-------------------------------ATCTTGATCCCATGGGGGC-AA---GAACCCA--------------------------AGTTGC--------C----GTGGCCTTTGCTTTG-------TTGGATTT-TGCTG-----------------GATTTTATGGGAACCCGCAGAAGGC-AGACATTGAACTAT-GCTGGTA i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42525598 137 + 51628933 TGACATTCCCTG----CCCTTC------ACTCAGGCACCGGGGGGGATTTGTGATCTGAATCCCATGGGAGG-GA---GAGCATG--------------------------------------------------CCCCACCT----------TGTATCTCTGCTG-----------------GATTTGG-GGAAATCCACAGGAGGC-GGACATTGAACTAT-GCCAGTA i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1082230 130 - 2169676 TGACGTTCCCTG----CCCTTC------CTACAGGCACC-GGAGGGATTTGTGATCTGAA-CCCATGAGAGG-GA---GAGCATG--------------------------AGCTGC--------CATTA----TCTGTACCT----------TGTATCTCTGCCG-----------------GATTTGG-------------------GGACATTGAACTAT-GCCAGTA i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17889738 152 + 84719076 TGATGATACCTG----ACCTTG------AAATGAGCTCC-TGTGGGATTTGTGATCTGAATCCTACGGAAAT-GA---GGGCACG--------------------------AGCTGT--------CGCTA----TCTTTATCTCA-------ATGTAATTCTGCTA-----------------GATTTTATGGGAATCCATAGAAGGC-AGACATTGAATCAT-TCCAATA i equCab2.chr6 I 1 C 0 s monDom5.chr2 530367409 139 - 541556283 ---CTCTGCCTGCCAAGCTCTG------TGCTGGCCATT-------------------GACTGCCT-AGGCAGTA---GAACAGAATGGGTGCATC---------------TGCCAA---------------------TACCTTGGGTCCCCTGGATTCA-----------------------TGTTTCATCAGAAAGTGATGGAACC-AGCTGCTGGTCTAGAGCTCATG i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 64116 191 + 214398 ---CACTGCCTGCCAAGCCCCA------TGCTGGGCACT-------------------GATCACCC-AGGCA-CA---GAACAGAAAGGACACCTCGCAGCCAAATAATGTTGCCAAATATATAGCCCAAAGTGCTGCTACCTTGGATTCACTTGCTTTCCATGTGGGGCTGGACATCCTGATTGTTTCACCA------GATGGAAGC-AGCCACTGTGTGAGAGCTGATG i sarHar1.chr4_GL857037_random C 0 C 0 e ornAna1.chr7 32352883 2421 + 40039088 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18988074 815 - 263237078 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=20778.000000 s mm10.chr1_GL456221_random 149109 12 + 206961 ACTCTT------------------------------CTGTGG s rn5.chr9 92394152 12 + 121549591 ACGCTC------------------------------CTCCGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177409 42 - 10418462 GCTCTCACAAATTCTTCCAGTTTAAGACTTAAGTAACTTGGT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176138 12 + 243199373 GCTTTT------------------------------CCATTG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554591 12 + 247518478 GCTTTT------------------------------CCATTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119510875 12 + 131632457 GCTTTT------------------------------CCATTG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723610 12 + 135000294 GCTTTT------------------------------CCATTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695167 12 + 6458163 GCTTTT------------------------------CCGCTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109519 12 + 106825570 GATTTT------------------------------CTGTTG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779754 12 + 158406734 GCCTTC------------------------------CCACTG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26601 12 + 18451090 TCCTTC------------------------------CCACTG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860444 12 - 32117204 GCTCTC------------------------------CTGTTG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42525735 12 + 51628933 ACTCTC------------------------------CCATTG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082360 12 - 2169676 ACTCTC------------------------------CCATTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889890 12 + 84719076 ATTCTC------------------------------CCACTG i equCab2.chr6 C 0 C 0 s monDom5.chr2 530367548 9 - 541556283 TCCCTT------------------------------TCG--- i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 64307 9 + 214398 TCCTTT------------------------------CCA--- i sarHar1.chr4_GL857037_random C 0 C 0 s ornAna1.chr7 32355304 12 + 40039088 ACTTTT------------------------------CTTGCC i ornAna1.chr7 I 2421 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18988074 815 - 263237078 I e turTru2.JH486691 29818 628 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=-10652.000000 s mm10.chr1_GL456221_random 149121 2 + 206961 -CT s rn5.chr9 92394164 2 + 121549591 -CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177451 2 - 10418462 -GT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176150 2 + 243199373 -GT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554603 2 + 247518478 -AT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119510887 2 + 131632457 -GT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723622 2 + 135000294 -AT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695179 2 + 6458163 -GT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109531 2 + 106825570 -TT i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779766 2 + 158406734 -GT i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26613 2 + 18451090 -GT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860456 2 - 32117204 -GT i otoGar3.GL873532 C 0 C 0 s turTru2.JH486691 30446 2 - 63237 -AT i turTru2.JH486691 I 628 I 1166 s canFam3.chr25 42525747 2 + 51628933 -AT i canFam3.chr25 C 0 I 3 s ailMel1.GL192536.1 1082372 2 - 2169676 -AT i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17889902 2 + 84719076 -AT i equCab2.chr6 C 0 I 3 s monDom5.chr2 530367557 1 - 541556283 --T i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 64316 1 + 214398 --T i sarHar1.chr4_GL857037_random C 0 C 0 s ornAna1.chr7 32355316 2 + 40039088 AA- i ornAna1.chr7 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18988074 815 - 263237078 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=217942.000000 s mm10.chr1_GL456221_random 149123 41 + 206961 ATTTCCCT--------------------CACCAGTTTAGAG--------A--------GATGACTGTGGGTGTGCAA s rn5.chr9 92394166 41 + 121549591 ATTTCCCT--------------------CACCAGTTTAGAG--------A--------GATGGCTGTGGGCGTGCAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177453 39 - 10418462 ATTT--GT--------------------CAGCAGATGAGGG--------A--------GACTTGTCAAAGTCTGAAG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176152 41 + 243199373 ATATTTGT--------------------CACCAGATTAGAG--------A--------GGCGTGTCAAGGCCTGAAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554605 41 + 247518478 ATTTTTGT--------------------CGCCAGATTAGAG--------A--------GGCGTGTCAAGGCCTGAAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119510889 41 + 131632457 ATATTTGT--------------------CACCAGATTAGAG--------A--------GGCTTGTCAAGGCCTGAAG i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723624 41 + 135000294 ATTTTTGT--------------------CACCAGATTAGAG--------A--------GGCGTGTCAAGGCCTGAAG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695181 41 + 6458163 ATTTTTGT--------------------CACCAGATTAGAG--------A--------GGCGTGTCAAGGCCTGAAG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109533 41 + 106825570 TTTTTTGT--------------------CACCAGATTAGAG--------A--------GACGTGTCAAGGCCTGAAG i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779768 41 + 158406734 ATTTTTGT--------------------CGCCAGATTAGAG--------A--------GGCGTGTCAAGGCCTGAAG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26615 41 + 18451090 ATTTTTGT--------------------CACCAGATTAGAG--------A--------GGCGTGTCAAGGCCTGAAG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860458 41 - 32117204 ATTTTTGT--------------------CACCAGCTTGGAG--------A--------GGCTTGTCAAGGCCTGAAG i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42525752 39 + 51628933 TTTTT--T--------------------TACCAGATTAAAG--------A--------GGTTTCTCAAAACATAAAG i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1082377 41 - 2169676 TTTTTTCT--------------------CACCAGATTAGAG--------A--------GGTTTCTCAAAACCTAAAG i ailMel1.GL192536.1 I 3 C 0 s equCab2.chr6 17889907 61 + 84719076 tcttttcttttcttttctttttttttTATACCAGATGAAAG--------A--------GGTTTCTGAAAAACTAAAG i equCab2.chr6 I 3 C 0 s monDom5.chr2 530367558 41 - 541556283 ATCTTTTT--------------------TAGCAGATTAAGAACTATTCCA--------AGCAGATCAGA-------- i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 64317 41 + 214398 GTTTTTGT--------------------CAACAGTTTACGGCGTATTCCA--------AGTGTGTCAGA-------- i sarHar1.chr4_GL857037_random C 0 C 0 s ornAna1.chr7 32355318 41 + 40039088 ATTTTTCT--------------------CCCCAGATTAAAG--------ACTACTACCAGCATATCAAG-------- i ornAna1.chr7 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e oviAri1.chr2 18988074 815 - 263237078 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=1329803.000000 s mm10.chr1_GL456221_random 149164 142 + 206961 GAGCCTATGTGGTTGGACATCATCAAGAAAAGGCTGAGTGACCAGGCTTACTGCCAAGTAGAAGACTTTGTGCAAGACATGAGGCTCATCTTCCAGAATCACAAAATCACGTTCAAGG-----------T-CAGCATCCCTTTGTGCCTGCATC----- s rn5.chr9 92394207 142 + 121549591 GAACCTATGTGGTTGGACATAATCAAGAGAAAGCTGAGTGATCAGGCTTACTCCCAAGTAGAAGACTTCGTGCAGGACATGAGACTCATCTTCCGGAATCACAGAATCACGTTCAAGG-----------T-CAGCATCCCTCTTTGTCTGCATC----- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177492 152 - 10418462 GAACCTATGTGGTTAAACAAAATCAAGAGAAGGCTGAATAATCAGGGTTACTCCCAAGTGAAGGGGTTTGTGCAGGACATACGCCTCATCTTTGAGAACCACAGGGCCTCGTACAAGGTAAGGACGCGCT-CTGCTTCCCTTTCTGTTTTC-TC----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176193 142 + 243199373 GAGCCCATGTGGTTGGATAAAATCAAGAAAAGGCTGAATGAGCACGGTTACCCCCAAGTGGAGGGGTTTGTACAAGACATGCGCCTCATCTTCCAGAACCACAGGGCCTCTTACAAGG-----------T-AGGTGGCTCTTCCTGCTTCCATT----- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554646 142 + 247518478 GAGCCCATGTGGTTGGATAAAATCAAGAAAAGGCTGAATGAGCACGGTTACCCCCAAGTGGAGGGGTTTGTACAAGACATGCGCCTCATCTTCCAGAACCACAGGGCCTCTTACAAGG-----------T-AGGTGGCTCTTCCTGCTTCCATT----- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119510930 142 + 131632457 GAGCCCATGTGGTTGGATAAAATCAAGAAAAGGCTGAATGAGCACGGTTACCCCCAAGTGGAGGGGTTTGTACAAGACATGCGCCTCATCTTCCAGAACCACAGGGCCTCTTACAAGG-----------T-AGGTGGCTCTTCCTGCTTCCATT----- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723665 142 + 135000294 GAGCCCATGTGGTTGGATAAAATCAAGAAAAGGCTGAATGAGCACGGTTACCCCCAAGTGGAGGGGTTTGTACAAGACATGCGCCTCATCTTCCAGAACCACAGGGCCTCTTACAAGG-----------T-AGGTGGCTCTTCCTGCTTCCATT----- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695222 142 + 6458163 GAGCCCATGTGGTTGGATAAAATCAAGAAAAGGCTGAATGAGCACGGTTACCCCCAAGTGGAGGGGTTTATACAAGACATGCGCCTCATCTTCCAGAACCACAGGGCCTCTTACAAGG-----------T-AGGTGGCTCTTCCCGCTTCCATT----- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109574 142 + 106825570 GAGCCCATGTGGTTGGATAAAATCAAGAAAAGGCTGAATGAGCACAGTTACCCCCAAGTGGAGGGGTTTGTACAAGACATGCGCCTCATCTTCCAGAACCACAGGGCCTCTTACAAGG-----------T-AGGTGGCTCTTCCTGCTTCCATT----- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779809 142 + 158406734 GAGCCCATGTGGTTGGATAAAATCAAGAAGAGGCTGAATGAGCACGATTATTCCCGAGTGGAGGGGTTTGTACGAGACATGCGCCTCATCTTCCAGAACCACAGGGCATCATACAAGG-----------T-AGGTGGCTCTTCCTGCTTCCATT----- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26656 142 + 18451090 GAGCCCATGTGGTTGGATAAAATCAAGAAGAGGCTGAATGAGCACGATTATTCCCGAGTGGAGGGGTTTGTACGAGACATGCGCCTCATCTTCCAGAACCACAGGGCATCATACAAGG-----------T-AGGTGGCTCTTCCTGCTTCCATT----- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860499 142 - 32117204 GAACCTATGTGGTTGAACAAAATCAAGAAAAAGCTGCATGAGAAGGGTTACCCCCGGGTGGAGGGGTTTGTGCAGGACATGCGCCTCATCTTCCAGAACCACAGGGCATCCTACAAGG-----------T-CAGTGGCCCCTCCTGCTTCTGTT----- i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18988889 139 - 263237078 GAAGCCATGTGGTTGGACCTGGTTAAAGAAAGGCTGACTGAGAAAGTGTACAC---AATGGCTTGGTTTTTACGGGACATGCGCCTGATATTTCACAACCATAAAACATTTTTCAAGG-----------T-AAAGGGAATTTCCTGCCTCCCTT----- i oviAri1.chr2 I 815 C 0 s canFam3.chr25 42525791 142 + 51628933 GAACCCATGTGGCTGGACAAAATCAAAAAGAAGCTAAATAAACAGGGTTACCACCAAGTAGAGGGGTTTGTGCGGGACATGCGGCTCATCTTTCATAACCACAGGATGTCTTACAAGG-----------T-AAAGGGCTCTCCCTGTTTTTATT----- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082418 142 - 2169676 GAACCCATGTGGTTGGACAAAATCAAGAAGAAGCTGAATAGACAGGGTTATCGCCAAGTGGAAGGGTTTGTGCGGGACATGCGCCTCATCTTTCAGAACCACAGGATGTCTTACAAGG-----------T-AAGGGGCTCTCCCTGCTTTCGTT----- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17889968 142 + 84719076 AATCCCATGTGGTTGGACAAAATCAAGAAGAGACTAAATGAACAGGGCTACCCCCAGGTGGAGGGGTTTGTGCAGGACATGCGCCTCATCTTTCAGAACCACAGGGCATCTTACAAGG-----------T-AGGTGGCTCTGCCTGCTTCCATT----- i equCab2.chr6 C 0 C 0 s monDom5.chr2 530367599 138 - 541556283 AACCCCATGTGGCTGGACCAGGTGAAGGAACGCCTGAGTAACGAGACTTACAACATAGTAGAGGGCTTTGTCCTGGATGTACGCCAGATTTTTTACAACTGCAAGAAATTTAACAAGG-----------T-AAGTGGCACTGCCTGCTCC--------- i monDom5.chr2 C 0 C 0 s sarHar1.chr4_GL857037_random 64358 138 + 214398 GAACCCATGTGGCTGGACCTGATAAAGAAGCGGCTCAGTGACGAGACCTATAATACAGTAGAGGGGTTTGTCCTGGATATGCGCCTGATTTTTAACAACTGCAAGAAATTTAACAAGG-----------T-GAGTAGCACTGCCTGCTTC--------- i sarHar1.chr4_GL857037_random C 0 N 0 s ornAna1.chr7 32355359 148 + 40039088 GAGCCTATGTGGTTGAATCTGATAAAGGAAAGGCTGCACCAGGGGATGTACAATACAATAGAGGGTTTTGTGCTTGATATGCGTCTAATCTTTAAGAACTGTTGGAAATTTAACAAGG-----------TAAAGTGGAAATTCCTGCTTTTTTCTCATC i ornAna1.chr7 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=25273.000000 s mm10.chr1_GL456221_random 149306 3 + 206961 TCA s rn5.chr9 92394349 3 + 121549591 TCA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177644 3 - 10418462 CCA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176335 3 + 243199373 TCA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554788 3 + 247518478 TCA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119511072 3 + 131632457 TCA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723807 3 + 135000294 TCA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695364 3 + 6458163 TCA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109716 3 + 106825570 TCA i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779951 3 + 158406734 CGG i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26798 3 + 18451090 TGG i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860641 3 - 32117204 TCA i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18989028 3 - 263237078 TCA i oviAri1.chr2 C 0 C 0 s canFam3.chr25 42525933 3 + 51628933 TCA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082560 3 - 2169676 TCA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890110 3 + 84719076 TCA i equCab2.chr6 C 0 C 0 s monDom5.chr2 530367737 3 - 541556283 CCA i monDom5.chr2 C 0 I 1248 s ornAna1.chr7 32355507 3 + 40039088 CCA i ornAna1.chr7 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=-8092.000000 s mm10.chr1_GL456221_random 149309 5 + 206961 --TCTTC- s rn5.chr9 92394352 5 + 121549591 --TCCTC- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177647 2 - 10418462 --TT---- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176338 2 + 243199373 --TT---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235554791 2 + 247518478 --TT---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119511075 2 + 131632457 --TT---- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122723810 2 + 135000294 --TT---- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695367 2 + 6458163 --TT---- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94109719 2 + 106825570 --TT---- i rheMac3.chr12 C 0 C 0 s calJac3.chr6 146779954 2 + 158406734 --TT---- i calJac3.chr6 C 0 C 0 s saiBol1.JH378144 26801 2 + 18451090 --TT---- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28860644 2 - 32117204 --CT---- i otoGar3.GL873532 C 0 C 0 s oviAri1.chr2 18989031 2 - 263237078 --CA---- i oviAri1.chr2 C 0 C 0 s canFam3.chr25 42525936 2 + 51628933 --TT---- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082563 2 - 2169676 --TT---- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890113 2 + 84719076 --TT---- i equCab2.chr6 C 0 C 0 s ornAna1.chr7 32355510 5 + 40039088 TCTT---C i ornAna1.chr7 C 0 I 497 e monDom5.chr2 530367740 1248 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=137723.000000 s mm10.chr1_GL456221_random 149314 39 + 206961 AGGGTTACT---------------CTGCACCCATTTTCTGCATGCTGGAAAGTT s rn5.chr9 92394357 39 + 121549591 AGGGTTACT---------------CTGCACCTATTTCCTGCTCACTGGAAAGTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177649 39 - 10418462 --GGCTGCT----------TC---CACCCCTCATTTTCTGGCACCTGGGAAGTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176340 41 + 243199373 --TCTTTCC--------ATCC---TTCCCCTCATTTTCTGGTGCCAAGAAAAAT i hg19.chr2 C 0 I 1 s panTro4.chr2B 235554793 41 + 247518478 --TCTTTCC--------ATCC---TTCCCCTCATTTTCTGGTGCCTAGAAAAAT i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119511077 41 + 131632457 --TCTTTCC--------ATCC---TTCCCCTCATTTTCTGGTGCCTAGAAAAAT i gorGor3.chr2B C 0 I 1 s ponAbe2.chr2b 122723812 41 + 135000294 --TCTTTCC--------ATCC---TTCCCCTCATTTTCTGGTGCCTAGAAAAAT i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3695369 41 + 6458163 --GCTTGCC--------ATCC---TTCCCCTCATTTTCTGGTGTCTAGAAAAAT i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94109721 41 + 106825570 --TCTTTCC--------ATCC---TTCCCCTCATTTTCTGGTGCCTAGAAAAAT i rheMac3.chr12 C 0 I 1 s calJac3.chr6 146779956 39 + 158406734 --TCTTTGC--------ATTC---TTCCCCTCATTTCCTGGTGCCTAGAAAA-- i calJac3.chr6 C 0 I 1 s saiBol1.JH378144 26803 41 + 18451090 --TCTTTCC--------ATTC---TTCCCCTCATTTTCTGGTGCCTGGAAAATT i saiBol1.JH378144 C 0 I 1 s otoGar3.GL873532 28860646 40 - 32117204 --TCCTTCC--------CATTGAGTTGCCCTCATTTTCTCGTT----GAGAGGT i otoGar3.GL873532 C 0 I 740 s oviAri1.chr2 18989033 39 - 263237078 --TCCTTTC--------TACT---TCCTCCTCAT-TTCTGG-GACAGCAGAGCT i oviAri1.chr2 C 0 C 0 s canFam3.chr25 42525938 49 + 51628933 --TTCTTTTCTTTGAGTCACT---CTGCCTTCATATTCTGGTGCCTGGAAAATT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082565 48 - 2169676 --TT-TTCCCTTTGAGTCGCT---CGGCCCTCATATTCTGGTGCCTGGAAAATT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890115 49 + 84719076 --TTCTTTCCATTGTGTCGCT---CTGCCCTCATTTTCAGGTGCTGGGAAATTT i equCab2.chr6 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr2 530367740 1248 - 541556283 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=234324.000000 s mm10.chr1_GL456221_random 149353 52 + 206961 --TAG-----TGTCATACATCTTCC----TGTAAT----AAGGATCAATAAATAAGAGATCTGGAAG s rn5.chr9 92394396 52 + 121549591 --TAG-----TTTCACATATCTTCC----TGTAAT----AAGGATCAATAAACAAGAGATCTGAGAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177688 51 - 10418462 --TAG-----TTTCCCTTGTCTTCC----TCTAAC----AACCCTGCACAAGCAAG-GCCCTGGAAA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231176382 49 + 243199373 --TAG-----TTTCCC---TCATCC----TGTAAT----AAGCTTGCACGAGCAAGGGTTCTGGAAG i hg19.chr2 I 1 C 0 s panTro4.chr2B 235554835 49 + 247518478 --TAG-----TTTCCC---TCATCC----TGTAAT----AAGCTTGCACGAGCAAGCGTTCTGGAAG i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119511119 49 + 131632457 --TAG-----TTTCCC---TCATCC----TGTAAT----AAGCTTGCACGAGCAAGGGTTCTGGAAG i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122723854 49 + 135000294 --TAG-----TTTCCC---TCATCC----TGTGAT----AAGCTTGCACGAGCAAGCGTTCTGGAAG i ponAbe2.chr2b I 1 C 0 s nomLeu2.GL397366 3695411 49 + 6458163 --TAG-----TTTCCC---TCATCC----TGTAAT----AAGCTTGCACGAGCAAGGGTTCTGGAAG i nomLeu2.GL397366 I 1 C 0 s rheMac3.chr12 94109763 49 + 106825570 --TAG-----TTTCCC---TCATCC----TGTAAT----AAGCTTGCACAAGCAAGGGTTCTGGAAG i rheMac3.chr12 I 1 C 0 s calJac3.chr6 146779996 52 + 158406734 --TAG-----TTTCCC---TCATCCTGTATGTAAT----AAGCTTGCACAAGCAA-GGTCCTGAAAG i calJac3.chr6 I 1 C 0 s saiBol1.JH378144 26845 49 + 18451090 --TAA-----TTTCCC---TCATCC----TATAAT----AAGCTTGCACAAGCAAGGGTTCTGAAAG i saiBol1.JH378144 I 1 C 0 s oviAri1.chr2 18989072 60 - 263237078 TTGCAAGGATCATGCC---TAGTCT----TGTGCTGGGGAGCGCTCAAAAAGCAAGGATTATAGAAG i oviAri1.chr2 C 0 N 0 s canFam3.chr25 42525987 51 + 51628933 TTACA-----TTTCCT---TCACCC----TATGAC----AAGCCCACGCAAGAAAGTGTTCTGGAAG i canFam3.chr25 C 0 I 195 s ailMel1.GL192536.1 1082613 51 - 2169676 TTACA-----TTTCCC---TCACCT----TACAAC----AAGCCCGCACAAGGAAGGCTTCTGGAAG i ailMel1.GL192536.1 C 0 I 226 s equCab2.chr6 17890164 51 + 84719076 TTCAG-----TTTCCT---TCATCC----CGTGAC----AACCTTGCACAAACAAGGGTTCTGGAAG i equCab2.chr6 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr2 530367740 1248 - 541556283 I e otoGar3.GL873532 28860686 740 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=11264.000000 s mm10.chr1_GL456221_random 149405 2 + 206961 CG s rn5.chr9 92394448 2 + 121549591 Tg i rn5.chr9 C 0 C 0 s speTri2.JH393335 4177739 2 - 10418462 TG i speTri2.JH393335 C 0 I 271 s hg19.chr2 231176431 2 + 243199373 TG i hg19.chr2 C 0 I 811 s panTro4.chr2B 235554884 2 + 247518478 TG i panTro4.chr2B C 0 I 810 s gorGor3.chr2B 119511168 2 + 131632457 TG i gorGor3.chr2B C 0 I 812 s ponAbe2.chr2b 122723903 2 + 135000294 TG i ponAbe2.chr2b C 0 I 201 s nomLeu2.GL397366 3695460 2 + 6458163 TG i nomLeu2.GL397366 C 0 I 201 s rheMac3.chr12 94109812 2 + 106825570 TG i rheMac3.chr12 C 0 I 201 s calJac3.chr6 146780048 2 + 158406734 TG i calJac3.chr6 C 0 N 0 s saiBol1.JH378144 26894 2 + 18451090 TG i saiBol1.JH378144 C 0 I 217 s equCab2.chr6 17890215 2 + 84719076 TG i equCab2.chr6 C 0 I 193 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr2 530367740 1248 - 541556283 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=3687.000000 s mm10.chr1_GL456221_random 149407 52 + 206961 CCAGACACAGTGATACAAGCATGGGATGGTAGCATTCAAAAGGCCGATGGAG s rn5.chr9 92394450 52 + 121549591 tcaaacacagtagtacaagcctgtgatagtagcattcaaaaggcagatggag i rn5.chr9 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr2 530367740 1248 - 541556283 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 149459 363 + 206961 cccttccgctccactcgagccccgggctaccttgccagcagagtcttgcccaacacccgcaagggcccacacaggtctccccaagggatcctaagacctctggtgagtggaacacagcacctgccccaatccaatcgcgcggaacctgagactgcggtatatagggaagcaggctacccgggcctgatctggggcactagccccttccgctccactcgatccccgggctaccttgccagcagagtctcgcccaacacctgcaagggcccacacaggactccccacgggatcctaagacctctggtgagtggaacacagcgcctgccccaatccaatcacgctgaacctgagactgcggtatat e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr2 530367740 1248 - 541556283 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=127.000000 s mm10.chr1_GL456221_random 149822 154 + 206961 agggaagcaggctacccgggcttgatctggggcacaaaccttttctgctccactcgagccccgggcta--ccttgcc-----------------agcagagtcgcct----------gacacccgcaagggcccacacaggattccacatgggatcctaagacctctagtgagtggaacacaa s sarHar1.chr2_GL841597_random 598414 166 - 4210173 AGGGAAGCAGCTCACCAAAGCTTCACC-------CCAACCATTCCACCCCAGCACAAGCCACCAGACAGGCCTTGACCCTCATTGTCGAGTAGTAGtaaaattttcttctctggctaGTCAGCAGCAAGACCCCACCCC----------TGGGGCATTAAACCTCACTCTCAGGGGAGGTTAG i sarHar1.chr2_GL841597_random N 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr2 530367740 1248 - 541556283 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=455.000000 s mm10.chr1_GL456221_random 149976 68 + 206961 cttctgccaggagtctggttcgaacaccagatatctgggtagctgccctgcaagaagagtgcttgcct s sarHar1.chr2_GL841597_random 598580 58 - 4210173 ----TGAGAAGGCCCTACCCCCAGCACAAGCCAAAAGGGGAGTCTACCCCCAGAAAAAG------CAA i sarHar1.chr2_GL841597_random C 0 N 0 s tetNig2.chrUn_random 63939649 64 - 107808587 CTTCGGCCAGGAGGA-GGTCCAAATACAAGATATCTGCGCACCTTCCCTGT---AAGAGAGCTTGCCA i tetNig2.chrUn_random N 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr2 530367740 1248 - 541556283 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=200.000000 s mm10.chr1_GL456221_random 150044 2 + 206961 gc s tetNig2.chrUn_random 63939713 2 - 107808587 GC i tetNig2.chrUn_random C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr2 530367740 1248 - 541556283 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=865.000000 s mm10.chr1_GL456221_random 150046 13 + 206961 agagaatactctg s xenTro3.GL172924 1121732 13 - 1503902 AGAAAAATCGTGA i xenTro3.GL172924 N 0 C 0 s tetNig2.chrUn_random 63939715 13 - 107808587 AGAGAGTGCTCTG i tetNig2.chrUn_random C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr2 530367740 1248 - 541556283 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-576.000000 s mm10.chr1_GL456221_random 150059 40 + 206961 cccactgaaact-------aaggagagt-gctaccctcccaggtctgc s xenTro3.GL172924 1121745 41 - 1503902 TCCACAACAGCC-------AAAAATGGCAGCGACTAGGCCCGAACCGC i xenTro3.GL172924 C 0 C 0 s latCha1.JH126992 309118 42 + 1406621 CCCGCTAAAATCCACTTGAAGGAAGAGT-ACTGACCGGCCAGG----- i latCha1.JH126992 N 0 C 0 s tetNig2.chrUn_random 63939728 42 - 107808587 AGCACTGAAACTCA-----GAGGAGAGA-ATCTGTCTCCCAGGTCTGC i tetNig2.chrUn_random C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr2 530367740 1248 - 541556283 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=215.000000 s mm10.chr1_GL456221_random 150099 11 + 206961 ttatagaggct s anoCar2.chrUn_GL343225 2327934 11 - 2387735 ttacaggaggg i anoCar2.chrUn_GL343225 N 0 C 0 s xenTro3.GL172924 1121786 11 - 1503902 ATGAAGCGGCG i xenTro3.GL172924 C 0 I 8 s tetNig2.chrUn_random 63939770 11 - 107808587 TGATAGACGGT i tetNig2.chrUn_random C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e latCha1.JH126992 309160 0 + 1406621 C e monDom5.chr2 530367740 1248 - 541556283 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-26399.000000 s mm10.chr1_GL456221_random 150110 131 + 206961 aacagagtcacctgaagaacaagc--------tcttaacagtgacaactaaaacagc----tagcttcagagattaccagatggcgaaaggcaaac-----------gtaagaatcctactaa---cagaaatca-agaccactcaccatcatcagaa s sarHar1.chr2_GL842197_random 255948 128 - 270121 aaaaaaatgtcccatagaacaa--------------aacaat--tcattcaaaaatt----caattgcacaaat-acaaaaaggagtaaaacaaacaaatgaa----gaaaacatcacactaaattcagaattga-acaataGGAAATA----AATGA i sarHar1.chr2_GL842197_random N 0 C 0 s anoCar2.chrUn_GL343225 2327945 126 - 2387735 gagataaagaactaaagaagaagg------------agcag---agattaaagaag----------gaaaagaaggagagaggacaccaaacaaacaaaaaaaaggggaaaaaattaaaacaaagaaaaaaatggcatactataaacca----aa--- i anoCar2.chrUn_GL343225 C 0 I 3 s xenTro3.GL172924 1121805 120 - 1503902 AGCGCCAGAATCTTCAGAGGTG--------------GATAG---CGATGCAGACAGCACGGTAGATGTGCAAACTTACCTGAGACGGCAACCC--------------TCAAAAATGGAAATAA---AAGAAATGTTCCACTCCTTAACA----AACGA i xenTro3.GL172924 I 8 I 4 s latCha1.JH126992 309160 129 + 1406621 -aacaaaaaaacttcagaaaTGGAAGACTGGTTCGAAACAGTATCAATTcaaaa-------tggaaggcaaagctaagaagaaaaagcaaatg--------------cagaaaatggcagcaa---cagaaaaagGCGTCTCTGCAACA----CAGTG i latCha1.JH126992 C 0 I 9 s tetNig2.chrUn_random 63939781 131 - 107808587 AACAGAATCACCAGAAGAACAATC--------TCTAAACAGAGTCAACTATAACTAC----TAACTCCAGAGATTACCAGATGGCGAAAGGTAAAC-----------GGAGGAATCTTACTAA---CAGGAACCA-AGACCACTCACCATCACCAGAA i tetNig2.chrUn_random C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr2 530367740 1248 - 541556283 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-3982.000000 s mm10.chr1_GL456221_random 150241 12 + 206961 cgcagcactccc s monDom5.chr1 156859136 12 + 748055161 cacagatcaccc i monDom5.chr1 n 1248 C 0 s sarHar1.chr2_GL842197_random 256076 5 - 270121 CACAA------- i sarHar1.chr2_GL842197_random C 0 C 0 s anoCar2.chrUn_GL343225 2328074 5 - 2387735 agaaa------- i anoCar2.chrUn_GL343225 I 3 I 3 s xenTro3.GL172924 1121929 12 - 1503902 CGCAGCGAACTC i xenTro3.GL172924 I 4 I 8 s latCha1.JH126992 309298 5 + 1406621 CGAGG------- i latCha1.JH126992 I 9 C 0 s tetNig2.chrUn_random 63939912 12 - 107808587 CCCAGCACACCC i tetNig2.chrUn_random C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-9861.000000 s mm10.chr1_GL456221_random 150253 16 + 206961 accccacctagtcctg s monDom5.chr1 156859148 16 + 748055161 cctgtatttaatcccc i monDom5.chr1 C 0 I 7 s sarHar1.chr2_GL842197_random 256081 3 - 270121 --------TAA----- i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118082548 16 + 175225315 ACCCTATCAAGTTCAG i taeGut1.chrUn N 0 I 5 s anoCar2.chrUn_GL343225 2328082 16 - 2387735 aaacaaaagatttGAA i anoCar2.chrUn_GL343225 I 3 I 5 s xenTro3.GL172924 1121949 16 - 1503902 CAAACAAGAACTCGAG i xenTro3.GL172924 I 8 C 0 s latCha1.JH126992 309303 16 + 1406621 CCGACACCAACATCAC i latCha1.JH126992 C 0 N 0 s tetNig2.chrUn_random 63939924 16 - 107808587 ACTTCGCCCAGTCCAG i tetNig2.chrUn_random C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-13034.000000 s mm10.chr1_GL456221_random 150269 23 + 206961 ggcacc----------ccaacacaaccgaaaat-- s monDom5.chr1 156859171 32 + 748055161 aacaccaagaaatgttatagccaaattcaaaa--- i monDom5.chr1 I 7 I 9 s sarHar1.chr2_GL842197_random 256084 32 - 270121 GGCAACAAGAattagttaagcaaaaccaaaaa--- i sarHar1.chr2_GL842197_random C 0 I 9 s taeGut1.chrUn 118082569 27 + 175225315 GTCAACGAGGG-----ccaaaaacaacagaaa--- i taeGut1.chrUn I 5 I 5 s anoCar2.chrUn_GL343225 2328103 27 - 2387735 AGCCCAGGAGA-----TCATCTATACCAGAAG--- i anoCar2.chrUn_GL343225 I 5 I 9 s xenTro3.GL172924 1121965 24 - 1503902 AGCATGGGGAC-----ACGAACAGACTCA------ i xenTro3.GL172924 C 0 C 0 s tetNig2.chrUn_random 63939940 23 - 107808587 ------GGAAC-----CCCAACACACCTGAGA-AC i tetNig2.chrUn_random C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-56760.000000 s mm10.chr1_GL456221_random 150292 74 + 206961 ctagacacagatttaaaaacatt-----------------------------------tctcatgatgatgatagaggaca------------tcaagaaggactttcataagtcacttaa s eriEur1.scaffold_345435 58195 52 + 88275 CTAGAGAAAAACTTTAGAAAATT-----------------------------------CATTATGAGGGCTAC--------------------CCAAGAA-------CCTAAGT------- i eriEur1.scaffold_345435 N 0 C 0 s monDom5.chr1 156859212 94 + 748055161 tgaaagaacaggtattacaagctgccaagatgaagccattcagataccatggaaa---catggtgaggataacacaggatctg----------tctgcat-------ccacaat------- i monDom5.chr1 I 9 C 0 s sarHar1.chr2_GL842197_random 256125 92 - 270121 aaagaaagaaagaaagaaaaaat------------------agaaaacatgaaaaatctctaatgggaaaaacaaccAACTTGgtaaatagatttaggag-------agacaat----cta i sarHar1.chr2_GL842197_random I 9 C 0 s taeGut1.chrUn 118082601 72 + 175225315 taaagcatATGAAAAAACCCAGG-----------------------------------ACGATTATGGATTACCCCAAGCCCAAGCA------CCCAAAT-------CAAAAATAA-CCAG i taeGut1.chrUn I 5 C 0 s anoCar2.chrUn_GL343225 2328139 68 - 2387735 TCAGGGATATGATGAGAGACATG-----------------------------------ATGAAGGAGGTCTACAGAATGCAAGAG-----------AAAC-------AGGATATACTTCAA i anoCar2.chrUn_GL343225 I 9 C 0 s xenTro3.GL172924 1121989 56 - 1503902 CTAGAAAGAAACCAAACAAAAAT----------------------------------------CGTGAGTAACCAAAGACAA-----------TACAACA-------CAATAAT------- i xenTro3.GL172924 C 0 C 0 s tetNig2.chrUn_random 63939963 74 - 107808587 CTAGACCTAGATTTAAAAGCATA-----------------------------------TCTCATGATGATGGTAGAGGACA------------TCAAGAAGGACTTTAATAAATCACTTAA i tetNig2.chrUn_random C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-114266.000000 s mm10.chr1_GL456221_random 150366 104 + 206961 agaaatacaggagagcactg--ctaaagagtt---gcaggccctta-------------aagaa----aag--catgaaaacacagc--caaaaag------------------------------------------gtgatggaaat---gaacaaaacc-ata-----------ctagaacta-----------a s eriEur1.scaffold_345435 58247 130 + 88275 -GTAAAATAGAAAATCA-TG--TTAAAGAGTT---AAAAATTCTTTTCACTAAGATGTTAAGAA----ACA--CACCAAAAAAGAGC--TCTAAAC---TGAGTTC--------------------------------ATTATGGAGGT-----ATAAAAT--ATG-----------AAAGAACTTCAAAGTTCAATA i eriEur1.scaffold_345435 C 0 C 0 s monDom5.chr1 156859306 106 + 748055161 -gaaggaccgaaaggca-tggaatacaatattccagaaagc------------------aagagaactaggcctacaatagcctagc--caagaat------------------------------------------------aaaatacccatcaaaactgact-----------atattctta-----------c i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 256217 100 - 270121 aggattattgaactccc-tgaaatacataat----gaaaaa------------------aagag-tctaga--taccatttttcag----------------------------------------------------------gaaat---catcaaagtgaactgtccagatgtcatagaatta-----------a i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118082673 98 + 175225315 AAGAGAACACAGCACCT-AGAAGCAGCTAC-----TCAAAG------------------AACTA----AAA--GATGAACAATGAGACCATAGTAC---------------------------------------------GGGGAGAT---AAAAGGAAATCAAG-----------AAGACCCTA-----------G i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328207 98 - 2387735 AAGATGGTTCAGGAACA-AATGTCAGATATGA---GAAAGG------------------AATGG----AAG--GAGGATTTaggaga--aatgaaa---------------------------------------------aaagaaat---gaaccaAATCCAAG-----------AAGACTTGA-----------G i anoCar2.chrUn_GL343225 C 0 C 0 s xenTro3.GL172924 1122045 86 - 1503902 -AGATAACCAAACAAGA-GAAAT------------AGAAGA------------------GATGC----ACA--GACAGATTGAGGAT--CTACAGA---------------------------------------------ACAGAAGT---CGCAGAAAC--AAT-----------ATAAGAGTA-----------A i xenTro3.GL172924 C 0 C 0 s latCha1.JH128317 357271 97 + 495207 AAAAAAGCAGAGAGTCA-TGACAAACACATT----GGCGGTTC----------------aatca----gaa--gaagaaaaactaGG--CCCGAAC---------------------------------------------AAAGGTGT---AATCCTGATCGA-------------ACTGCGCAA-----------G i latCha1.JH128317 N 0 C 0 s tetNig2.chrUn_random 63940037 146 - 107808587 AGAAATACAGGAGAACACTG--CTAAAGAGTT---ACAAGTcctta-------------aagaa----aaa--caggaaaacacaat--caaacaggtagaagtccttacagaaaaagaggaaaaaacatacaaacaggTGATGGAAAT---GAACAAAACC-ATA-----------CTAGACCTA-----------A i tetNig2.chrUn_random C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-100917.000000 s mm10.chr1_GL456221_random 150470 83 + 206961 aagggg---aagtag---------a---cacaataaagaaaa--------cc--caaagcgaggcaacgctgga-gat-----aga----aaccctagga----a------agaga-----t-ctggaacaat----a s eriEur1.scaffold_345435 58377 85 + 88275 aggagt---taggaa---------g---catgaaagaaagac--------CT--TAAAGATTGTTTACTATGGA-CAt-----aga----aaacattaaa----g------aaaaa-----c-tt--CACAGTTTCCA i eriEur1.scaffold_345435 C 0 C 0 s monDom5.chr1 156859412 88 + 748055161 agggga---aagtatggtcatttaa---tacaacagaagagt--------tc--caa------gcattcataaataaa-----aga--ccagacctgaa-----c------agaaa-----a-tt--tgaagt--cca i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 256317 85 - 270121 aaggta---aaat-----------a---gacattgaaagaat--------tcatcaa------tcacctacaga-aag-----agatcccaaaattaaaactcca------agaaa-----t-at--tatggc--taa i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118082771 79 + 175225315 ---------AAGAGC---------A---TAAAAGAAAGACAT--------TG--Caagact--------aaata-aaa-----aaatggatgATCTTATG----GAAATTAAAGAA-----A-CT--GTTGAC--CAA i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328305 99 - 2387735 AGAATT---AAGGac---------a---gagaagaaagaaataaggaaaaca--caagaatccacacagaaaga-gat-----aaaagaaatatatgaaa----gaaat--agaaa-----a-at--ggaaag--gaa i anoCar2.chrUn_GL343225 C 0 C 0 s xenTro3.GL172924 1122131 92 - 1503902 GGGGGATCCCGGAAA---------C---CACAGTAAAAGACG--------AC--ATACTACCGACATTACTACA-AATTTTTAATA----ACATATTGGA----A------AGAGA-----CGCT--AATACT--CCA i xenTro3.GL172924 C 0 C 0 s latCha1.JH128317 357368 86 + 495207 ATGAGA---ACGTCG---------C---TGGAGGAGAAAATT--------AA--TAA-GGTAGCTGGTGATACA-GAG-----AGAGCCAATAATTTAgt----a------atgga-----a-tt--aaaaac--tgg i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940183 83 - 107808587 AAAGGG---AAGTAG---------A---CACAATAAAGAAAA--------CT--CAAAGCGAGGCAACACTAGA-GAT-----AGA----AAACCTAGGA----A------AGAAATCTGGA-AC--CATA------- i tetNig2.chrUn_random C 0 C 0 s danRer7.chr11 12642301 76 + 46661319 agagtg---aagtag---------gatttattattaataaaa--------ta--aaataaaaggcaa------a-aat-----aaa----caacccagag----g------gggaa----aa-ac--acta------- i danRer7.chr11 N 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-104765.000000 s mm10.chr1_GL456221_random 150553 31 + 206961 gatgcgag----------c-------------atca---------------------gcaacagaataCAAG----------------AAA s eriEur1.scaffold_345435 58462 50 + 88275 GTTGTGAAAGA-------C-------------ATTT---------------------TGAATGCAATACAGGCTTAGGTAGTTCAACCATG i eriEur1.scaffold_345435 C 0 C 0 s monDom5.chr1 156859500 42 + 748055161 accacagaact-------c-------------aagagaatca-------------tcaaaaggtaattaaaa----------------aag i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 256402 41 - 270121 attccagaactatcacacc-------------aagg---------------------aaaaaatactacaag----------------cag i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118082850 33 + 175225315 ATTAAAAAGAT-------T-------------CTGGACACTC--------------------ATAGTACAAG----------------A-- i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328404 65 - 2387735 acaggaagaat-------tagaagcaaaagaaatggaatTCCA---GCTAAGACTACGAAATATAGTGGAAG----------------AGC i anoCar2.chrUn_GL343225 C 0 C 0 s xenTro3.GL172924 1122223 55 - 1503902 ATTGCAATAGA-------T-------------AGAGCCCACAGAGTGTTTAAACCGCGGAACGCACCGCCGG----------------AGG i xenTro3.GL172924 C 0 N 0 s latCha1.JH128317 357454 32 + 495207 TTTCGGTGAAT-------T-------------AAAAAAC------------------AGAATGGAATTTA--------------------- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940266 31 - 107808587 --------------------------------------------GATTTGAGCATCAGCAACAGAATACAAG----------------AGA i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 523842 31 + 1084701 --------------------------------------------GATATTAATCTCGGCAACAGGATTGGTG----------------AAA i oryLat2.scaffold212 N 0 C 0 s danRer7.chr11 12642377 17 + 46661319 ----------------------------------------------------------ctacaacaaacaat----------------aaa i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-94433.000000 s mm10.chr1_GL456221_random 150584 44 + 206961 TGGAAGAGAG----AATCTCAG---------------------------GTGC--AGAAG-ATTCCATAGAGAACATC--- s eriEur1.scaffold_345435 58512 40 + 88275 CAGGGGAGAA----TATATTTG---------------------------GGCC--AGAAG-AT---ATAATGAACA-C--- i eriEur1.scaffold_345435 C 0 C 0 s monDom5.chr1 156859542 45 + 748055161 aggggaaaaacaacaacaacaa---------------------------caacaaaaaag-tttttttaagag-------- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 256443 42 - 270121 ccagaaaaa-----aacttcaa---------------------------ataccaaggag-ctacaataaggatc------ i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118082883 54 + 175225315 CTAGAGGAAGTTG-AACAACGAA--TCAGTGA-----------------CCTCGAAGATG-ACAgaatggaaaat------ i taeGut1.chrUn C 0 I 1 s anoCar2.chrUn_GL343225 2328469 70 - 2387735 CAAGAGAAAATAT-AAGATTGA----CGGTGGCGGAAATACTCTCCAATCTTCTGGGATGTACAGAGAGAGAAAT------ i anoCar2.chrUn_GL343225 C 0 I 1 s xenTro3.GL172702 1190627 47 + 3338395 TGGAAAACAA----AATGGCAGAACTTGTAAG-----------------CTCCCACAACG-AGCTCATA------------ i xenTro3.GL172702 N 0 C 0 s latCha1.JH128317 357486 37 + 495207 TGGATGATAG----AATATCAG---------------------------GGGC--GGAGG-TGGACATAAA---------- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940297 44 - 107808587 TGGAAGAGAG----AATCTCAG---------------------------GTGC--AGAAG-ATTCCATAGAGAAC---ATC i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 523873 43 + 1084701 CAGAAAGCAG----AGTGTCAC---------------------------AACT--GGAGG-ATGCTAACGCTAAT---CT- i oryLat2.scaffold212 C 0 C 0 s danRer7.chr11 12642394 45 + 46661319 tcaaacaaac----aaacttga---------------------------ctgg--gcaggcaggacaaggcagga---ctg i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-1737.000000 s mm10.chr1_GL456221_random 150628 4 + 206961 GACA s eriEur1.scaffold_345435 58552 3 + 88275 -AAC i eriEur1.scaffold_345435 C 0 I 1 s sorAra1.scaffold_221719 31527 4 + 35690 gatc i sorAra1.scaffold_221719 N 0 I 644 s monDom5.chr1 156859587 3 + 748055161 -act i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 256485 3 - 270121 -act i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118082938 4 + 175225315 aaag i taeGut1.chrUn I 1 I 2 s anoCar2.chrUn_GL343225 2328540 4 - 2387735 GAGG i anoCar2.chrUn_GL343225 I 1 I 12 s xenTro3.GL172702 1190674 4 + 3338395 GACG i xenTro3.GL172702 C 0 I 12 s tetNig2.chrUn_random 63940341 4 - 107808587 GGCA i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 523916 2 + 1084701 --CA i oryLat2.scaffold212 C 0 C 0 s danRer7.chr11 12642439 4 + 46661319 gaca i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e latCha1.JH128317 357523 0 + 495207 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-166757.000000 s mm10.chr1_GL456221_random 150632 68 + 206961 CAACAGTCA--AAGAAAATACAAAATGCAAAAGGAT-------------CCTAACTCAA-----------AACA----------TC------CAGGTAATCCA-----GGACACA s eriEur1.scaffold_345435 58556 67 + 88275 TCA-ATTTA--AAGATAATGAAGAA---GAAAGGTT---------------TAGGGGAA-----------AGGAAG----CAACTC------TATGTGAAATA-----G-ACTTA i eriEur1.scaffold_345435 I 1 C 0 s monDom5.chr1 156859590 54 + 748055161 caataagtt--aaaatgatacgtatccctataagaa---------------------aa-----------gagg----------tc------------attgg-----caactct i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 256488 62 - 270121 cag-gatct--agcagtatccatattaaaaaaaaaa----------------aaatcaa-----------agga----------tc------t--ggaatctg-----atattct i sarHar1.chr2_GL842197_random C 0 I 4 s taeGut1.chrUn 118082944 63 + 175225315 taaaagaaa--gaatggggaaaaaaattgaaaaaat--------------------cga-----------aatG------GACCTC--------AGGGATATG-----ATAGATA i taeGut1.chrUn I 2 I 12 s anoCar2.chrUn_GL343225 2328556 68 - 2387735 TGACATACA--GAGTAAATACAATATAtgcaagga----------------------aa-----------aata------aaacac------caaGAGACGTGCTTGTACATCTG i anoCar2.chrUn_GL343225 I 12 I 11 s xenTro3.GL172702 1190690 53 + 3338395 TAGAAAGCG--AAGTAGACAAACTAACAAATAAACTGGC-----CGACATTGAGGACAG-----------A-------------------------------------------- i xenTro3.GL172702 I 12 C 0 s latCha1.JH128317 357523 58 + 495207 CAACCTGCA--GAGGAAAGGGGAggtgcaggaaaaagaaaatagaagaatCTGGGACAA-----------A-------------------------------------------- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940345 68 - 107808587 CAACAAtca--aagaaaatggaaaatgcaaaaagat-------------CCTAACTCAA-----------AATATCCAGGAAATCCAGGACACA--------------------- i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 523918 72 + 1084701 CAGAGGTTACTACGGAGCTGAAGAAT---AAAGTTG-------------CACAATTTGAGGCGCGGGTGCAATACCACGAAAACTC------CA--------------------- i oryLat2.scaffold212 C 0 C 0 s danRer7.chr11 12642443 44 + 46661319 cagcag-------------gacaggt---aaacatc-------------gacaacatat-----------gatgac----gaactc------gc--------------------- i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-100359.000000 s mm10.chr1_GL456221_random 150700 52 + 206961 ATGAGAAAACCAAAACT-------ACGGATAATAGGAATTG-----------ATGAGAATGA------------------AGA---TTTTC s eriEur1.scaffold_345435 58623 48 + 88275 ATAAAAAGGTTGTGTGT-------GAGAGTGACAAAAATTC-----------CTGAGGAAGA------------------GGA-------C i eriEur1.scaffold_345435 C 0 N 0 s monDom5.chr1 156859644 67 + 748055161 -taaaaactgttgctatcacctaagcagctagaagaactac---actcagagggaacagtgac-----------------aaa---ctgta i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 256554 57 - 270121 gcaaaagaagttggtat-------gcagccaagaataatgT---ACCCA---GTAAAATTGA------------------Gca---ctttc i sarHar1.chr2_GL842197_random I 4 C 0 s taeGut1.chrUn 118083019 39 + 175225315 ----------CCAATAT-------AAGACTCATTGGTGTCc-----------cagaagggga------------------aga---aa--- i taeGut1.chrUn I 12 C 0 s anoCar2.chrUn_GL343225 2328635 57 - 2387735 ----------ATAAGAG-------ACGAAATATTGAAgata-----------aacaacagaaaacaaatattttttaaagaaa---aa--- i anoCar2.chrUn_GL343225 I 11 C 0 s chrPic1.AHGY01493446 0 49 + 596 ATTAAACGTCCAAACAT-------CCGGATAATAGGCATCC-----------CAGAAGGTGA------------------AGA---GA--- i chrPic1.AHGY01493446 N 0 C 0 s xenTro3.GL172702 1190743 54 + 3338395 AACAGGAGAAACAATCT-------CAGAATTAGAGGTGTACCGGAGCAA---ATAAAAATGG------------------AG--------- i xenTro3.GL172702 C 0 I 1 s latCha1.JH128317 357581 48 + 495207 --------TTGTTAGAT-------TTGGAAGCTAGGAGTCA----GCGA---AATAACATCA------------------GAA---TTTTT i latCha1.JH128317 C 0 I 3 s tetNig2.chrUn_random 63940413 52 - 107808587 ATAAGAAGACCAAACGT-------ACGGATAATAGGAGTGG-----------ATGAGAATGA------------------AGATTTTC--- i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 523990 48 + 1084701 GCAGAAGGAACAACC-T-------GAGAATCAAAGGGGTGC-----------CAGAGAATGC------------------AGA---GA--- i oryLat2.scaffold212 C 0 C 0 s danRer7.chr11 12642487 46 + 46661319 acaggac-agcagacat-------aaggggtttataaactg-----------taggaaatta------------------aca-------- i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-513.000000 s mm10.chr1_GL456221_random 150752 1 + 206961 A s monDom5.chr1 156859711 1 + 748055161 t i monDom5.chr1 C 0 I 3 s sarHar1.chr2_GL842197_random 256611 1 - 270121 a i sarHar1.chr2_GL842197_random C 0 I 3 s taeGut1.chrUn 118083058 1 + 175225315 a i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328692 1 - 2387735 a i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 49 1 + 596 C i chrPic1.AHGY01493446 C 0 C 0 s latCha1.JH128317 357632 1 + 495207 A i latCha1.JH128317 I 3 C 0 s tetNig2.chrUn_random 63940465 1 - 107808587 A i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 524038 1 + 1084701 G i oryLat2.scaffold212 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e xenTro3.GL172702 1190797 1 + 3338395 I e sorAra1.scaffold_221719 31531 644 + 35690 I e danRer7.chr11 12642533 0 + 46661319 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-181290.000000 s mm10.chr1_GL456221_random 150753 96 + 206961 A-----CTTAAAGGGCCAGCTAATA---TCTTCAA-----------------CAAAA------TAATAGAAGAAAAC-TTCCCAAACATA--------AAGAAAGAGATGCCCA--TGATCATACA-AGAAGCCTACAG s echTel1.scaffold_279063 46810 96 + 47590 A-----CACAAATCGACAGCCAAGA---TAGCAAA-----------------GGTAT------TTCTGGAAgaaaac-tttcccacccta--------acaagggagaaccatg--cactcataca-ggaagtaggaag i echTel1.scaffold_279063 N 0 C 0 s monDom5.chr1 156859715 93 + 748055161 at---gaaaggacaagacataaatgggtatataga-----------------tatat------gcatgcataaatac-atatacatgtgt--------atgta---------ta--tatatatacatatatgtatatat i monDom5.chr1 I 3 C 0 s sarHar1.chr2_GL842197_random 256615 77 - 270121 a-----aaaagatgggcattcaatg---aagtagt-----------------taaat------tc-----------c-atttatttctg---------atgaaaaa----cccA--GAGTTAAACA-AAACGTTTG--- i sarHar1.chr2_GL842197_random I 3 C 0 s taeGut1.chrUn 118083059 96 + 175225315 -----gggtAAAAGTCTAGGAAGAG---TATTCAA-----------------AGAAA------TTGTTGGGGAAAAC-TTCCCAAATCTT--------CTAAACAACATAAATA--CACAAATCAT-AAATGCTCAGCG i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328693 99 - 2387735 -----aggtggCCATCTTAAAAGAA---CAACCAA---------GCTCGGtgataaa------cagaagaagaaaat-ataccCCCCTTA--------CTGACGaac-taaaaa--agaagaaaat-aaa-gttcA--- i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 50 96 + 596 -----TCATAAGGGCATTGATAATC---TATTCCA-----------------TGAAA------TCCTACAAGAAAAC-TTTCCAAACCTG--------GAGAGGCACTCAAAGA--TCCATTCCCA-AGAAATACAGAG i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1190798 85 + 3338395 -----------------------------ATTTAA-----------------ATCAC------TACCTCACAGAAAT-GCTCCAAACTTTACTGCCACAAGAAAAACTTGAGCACTTGCTAGTGGA-CAGAGCCCACAG i xenTro3.GL172702 I 1 C 0 s latCha1.JH128317 357633 115 + 495207 -TCCCGGAAGGAGAAGaaataaaca---caaacaaaatggaACAATTTGTTCAGAAT------TTATTAGCAAAAAT-AATCCCATCACTGCAC----ATGGAGGACT--------TAGAAGTCGA-GCGTGCTCACAG i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940466 96 - 107808587 -----ACTCAAAGGTCCAGCAAACA---TCTTCAA-----------------CAAAA------TTATTGAAGAAAAC-TTCCCAAATCTA--------AAGAAAGAGATGCCTA--TGAACATACA-AGAAGCCTACAG i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 524039 96 + 1084701 -----AGGGAAAAGTGTGACAGA-G---TACGTGA-----------------TGGAC------ATGCTGCGGAGTTCATTCCCAAACAAC--------AAGGAGGCAAACCAGA--TTATCATTGA-GAGAGGCCGCAG i oryLat2.scaffold212 C 0 C 0 s danRer7.chr11 12642533 93 + 46661319 ---------aaaaaacagatgaaca---taattaa-----------------ctaataatgggttaacaaggagggtgggactagacaat--------agacgggagcgc--------atgacaca-gagagacaacac i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-4163.000000 s mm10.chr1_GL456221_random 150849 7 + 206961 AA--------CTCCA s dipOrd1.scaffold_24581 3604 7 - 18191 ag--------cacca i dipOrd1.scaffold_24581 N 0 I 111 s echTel1.scaffold_279063 46906 7 + 47590 ga--------cgcca i echTel1.scaffold_279063 C 0 C 0 s monDom5.chr1 156859808 7 + 748055161 at--------atata i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 256692 7 - 270121 Ac--------atcca i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118083155 7 + 175225315 AA--------CTCCA i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328792 7 - 2387735 AA--------TGGGA i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 146 7 + 596 GA--------CCCCA i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1190883 6 + 3338395 AT--------TACC- i xenTro3.GL172702 C 0 I 5 s latCha1.JH128317 357748 7 + 495207 AA--------CACTA i latCha1.JH128317 C 0 I 2 s tetNig2.chrUn_random 63940562 7 - 107808587 AA--------CTCCA i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 524135 7 + 1084701 AA--------TTCCC i oryLat2.scaffold212 C 0 C 0 s danRer7.chr11 12642626 15 + 46661319 aagccatgcgctccg i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=775.000000 s mm10.chr1_GL456221_random 150856 4 + 206961 AATA s echTel1.scaffold_279063 46913 4 + 47590 gcta i echTel1.scaffold_279063 C 0 C 0 s monDom5.chr1 156859815 4 + 748055161 tata i monDom5.chr1 C 0 I 3 s sarHar1.chr2_GL842197_random 256699 4 - 270121 aata i sarHar1.chr2_GL842197_random C 0 I 3 s taeGut1.chrUn 118083162 4 + 175225315 AATA i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328799 4 - 2387735 AAGA i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 153 4 + 596 AATA i chrPic1.AHGY01493446 C 0 C 0 s latCha1.JH128317 357757 2 + 495207 AA-- i latCha1.JH128317 I 2 C 0 s tetNig2.chrUn_random 63940569 4 - 107808587 AATA i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 524142 4 + 1084701 ACTG i oryLat2.scaffold212 C 0 C 0 s danRer7.chr11 12642641 4 + 46661319 atga i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e xenTro3.GL172702 1190889 5 + 3338395 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e dipOrd1.scaffold_24581 3611 111 - 18191 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-3437.000000 s mm10.chr1_GL456221_random 150860 7 + 206961 GACT--------------GGA s dipOrd1.scaffold_24581 3722 7 - 18191 GACT--------------GGA i dipOrd1.scaffold_24581 I 111 I 48 s echTel1.scaffold_279063 46917 7 + 47590 gact--------------aga i echTel1.scaffold_279063 C 0 C 0 s monDom5.chr1 156859822 7 + 748055161 gact--------------aaa i monDom5.chr1 I 3 I 1 s sarHar1.chr2_GL842197_random 256706 21 - 270121 gactcatgagaagcattaaaa i sarHar1.chr2_GL842197_random I 3 I 1 s taeGut1.chrUn 118083166 7 + 175225315 GAAT--------------AAA i taeGut1.chrUn C 0 I 1 s anoCar2.chrUn_GL343225 2328803 7 - 2387735 GAAG--------------AGG i anoCar2.chrUn_GL343225 C 0 I 1 s chrPic1.AHGY01493446 157 7 + 596 GAAT--------------CAA i chrPic1.AHGY01493446 C 0 I 1 s latCha1.JH128317 357759 5 + 495207 -GCT--------------GA- i latCha1.JH128317 C 0 I 4 s tetNig2.chrUn_random 63940573 7 - 107808587 GACT--------------GGA i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 524146 7 + 1084701 TGAT--------------TAA i oryLat2.scaffold212 C 0 C 0 s danRer7.chr11 12642645 7 + 46661319 caca--------------gga i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e xenTro3.GL172702 1190889 5 + 3338395 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-77795.000000 s mm10.chr1_GL456221_random 150867 37 + 206961 -CCAGA----AAA-------A-------------AA------------ATT------------CCTCCGAC---A--CATAATAATCAGAA s echTel1.scaffold_279063 46924 41 + 47590 -ctagaccaagaa-------g-------------aa------------cat------------gccaagac---a--tataatagtaaaaa i echTel1.scaffold_279063 C 0 I 1 s monDom5.chr1 156859830 42 + 748055161 -ctaaa----aaa-------g-------------aaaagag-------gtt------------atgactaa---a--agaaatgggaaaag i monDom5.chr1 I 1 I 1 s sarHar1.chr2_GL842197_random 256728 56 - 270121 -gtaaa----aagaactcttg-------------aaaactgtatttctgtt------------atgagtat---a--catgaagactacat i sarHar1.chr2_GL842197_random I 1 I 1 s taeGut1.chrUn 118083174 37 + 175225315 -CCAAA----TAA-------A-------------CC------------CAC------------TCCGAGAC---A--TATACTGATCACAC i taeGut1.chrUn I 1 C 0 s anoCar2.chrUn_GL343225 2328811 33 - 2387735 -GTTAA----TGG-------C-------------GA------------CAT------------TTAAAGAACGGA--AATACTG------- i anoCar2.chrUn_GL343225 I 1 C 0 s chrPic1.AHGY01493446 165 37 + 596 -CCAAG----AAG-------A-------------TC------------TTC------------TCCAAGAC---A--CATTATAGCCAGGT i chrPic1.AHGY01493446 I 1 C 0 s xenTro3.GL172702 1190894 37 + 3338395 -ACAAA----AAT-------G-------------CA------------CCC------------CCCGGTGC---A--CCTAGAGAAGTCAT i xenTro3.GL172702 I 5 I 2 s latCha1.JH128317 357768 36 + 495207 -GCAAA----GGC-------C-------------AA------------TGC------------CCCAGAGC---GATCATAGTGAAGA--- i latCha1.JH128317 I 4 C 0 s tetNig2.chrUn_random 63940580 38 - 107808587 CCAGAA----AAG-------A-------------AA------------TTC------------CTCCCGAC---A--CATAATAATCAGAA i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 524153 36 + 1084701 AGAGAA----CAG-------A-------GGAGGCAG------------CTC------------TTCTGGAC---C--C--------CAGAA i oryLat2.scaffold212 C 0 C 0 s danRer7.chr11 12642652 61 + 46661319 caagaa----cat-------gcggccagtgagagaa------------ctcatcaaccgcatgttcatgac---a--a--gacgagcacaa i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e dipOrd1.scaffold_24581 3729 48 - 18191 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=926.000000 s mm10.chr1_GL456221_random 150904 1 + 206961 C s dipOrd1.scaffold_24581 3777 1 - 18191 c i dipOrd1.scaffold_24581 I 48 N 0 s taeGut1.chrUn 118083211 1 + 175225315 T i taeGut1.chrUn C 0 C 0 s chrPic1.AHGY01493446 202 1 + 596 T i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1190933 1 + 3338395 T i xenTro3.GL172702 I 2 C 0 s latCha1.JH128317 357804 1 + 495207 T i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940618 1 - 107808587 C i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 524189 1 + 1084701 C i oryLat2.scaffold212 C 0 C 0 s danRer7.chr11 12642713 1 + 46661319 c i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e sarHar1.chr2_GL842197_random 256784 1 - 270121 I e monDom5.chr1 156859872 1 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e anoCar2.chrUn_GL343225 2328844 0 - 2387735 C e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e echTel1.scaffold_279063 46965 1 + 47590 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-24138.000000 s mm10.chr1_GL456221_random 150905 12 + 206961 AA-----------------CAAATGCACT s echTel1.scaffold_279063 46966 14 + 47590 ta---tc------------caactttgag i echTel1.scaffold_279063 I 1 C 0 s taeGut1.chrUn 118083212 12 + 175225315 -----GT------------CAAACacaga i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328844 12 - 2387735 -----GA------------TAACCACAGA i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 203 12 + 596 -----GA------------CCAAAACCAC i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1190934 17 + 3338395 AAGACTT------------CACTTTTACC i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 357805 12 + 495207 -----GT------------TAAGATTTAA i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940619 12 - 107808587 -----AT------------CAAATGCACT i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 524190 7 + 1084701 -------------------CACAT---CC i oryLat2.scaffold212 C 0 C 0 s danRer7.chr11 12642714 24 + 46661319 -----actgaagcacacgacaaaagcacg i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e sarHar1.chr2_GL842197_random 256784 1 - 270121 I e monDom5.chr1 156859872 1 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-2645.000000 s mm10.chr1_GL456221_random 150917 2 + 206961 AA s echTel1.scaffold_279063 46980 2 + 47590 ga i echTel1.scaffold_279063 C 0 C 0 s monDom5.chr1 156859873 1 + 748055161 -a i monDom5.chr1 I 1 C 0 s sarHar1.chr2_GL842197_random 256785 1 - 270121 -t i sarHar1.chr2_GL842197_random I 1 C 0 s taeGut1.chrUn 118083224 2 + 175225315 ag i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328856 2 - 2387735 AG i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 215 2 + 596 AG i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1190951 2 + 3338395 AT i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 357817 2 + 495207 TA i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940631 2 - 107808587 AA i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 524197 2 + 1084701 TG i oryLat2.scaffold212 C 0 C 0 s gadMor1.HE569330 781 2 - 5596 AG i gadMor1.HE569330 N 0 C 0 s danRer7.chr11 12642738 2 + 46661319 tg i danRer7.chr11 C 0 I 136 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-61307.000000 s mm10.chr1_GL456221_random 150919 42 + 206961 ATAAA--GATAGAATATTAAA----A--GCAGTAAGGGAG--------------A------AAGGTCAAG- s echTel1.scaffold_279063 46982 41 + 47590 ataa---gagaaaattttatg----a--gcagcaagagaa--------------a------tgaagacag- i echTel1.scaffold_279063 C 0 C 0 s monDom5.chr1 156859874 61 + 748055161 acaaatgggggtaaatttata----t--gtcacaatgaag---ctcatggtgggagcggggagaacattg- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 256786 60 - 270121 ataatttggtttactgttata----ttattaacaaaaaaggatctaaaggtggaa------aggaaattg- i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118083226 42 + 175225315 ggaag--gagcaggtTCTGAA----A--GCAGCAAGAGAA--------------A------AGCAATTCA- i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328858 35 - 2387735 A----------AAGTGCTaaa---ga--atttttaaagaa--------------a------atcaagTCa- i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 217 42 + 596 ACAAA--GACAAGATACTAAG----A--TTGGCAAGAGAA--------------G------AACATCAAG- i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1190953 45 + 3338395 ATAAAG-GAACTAACGTTAAACGCTT--TCCGCAATAGAC--------------A------GGAA--CTG- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 357819 42 + 495207 TTAAG--GAAGAAATTCTGAG----A--AAAGCAAGAGAA--------------G------TTAAATTTT- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940633 42 - 107808587 ATAAA--GATAGAATACTAAA----A--GCAGTAAGGGAA--------------A------A-AGGTCAAG i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold212 524199 40 + 1084701 GTAAG--ATTTCTATACT--T----T--TCGGTCAGAGAG--------------A------A-AGTTCGAG i oryLat2.scaffold212 C 0 N 0 s gadMor1.HE569330 783 42 - 5596 ATAAA--GCGCGGGTGATGAA----C--GCGGCACGGAAG--------------A------AGAAGGCGA- i gadMor1.HE569330 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e danRer7.chr11 12642740 136 + 46661319 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-56446.000000 s mm10.chr1_GL456221_random 150961 68 + 206961 TAACATATAAAGGAAGGCC----TATCAGAAGTA----CACCAGACTTTTCACCAGAGACTATG-AA---AGCCAGAAGA s echTel1.scaffold_279063 47023 68 + 47590 tcacatacaaggaagtgca----tgtaagaatat----tcttagacctatctgcagataccatg-aa---gaggatgaga i echTel1.scaffold_279063 C 0 C 0 s monDom5.chr1 156859935 73 + 748055161 atacactggaagggtaaagaggttggagataggaa--atactcaactctt----acatactttg-aaactgacccaaaga i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 256846 51 - 270121 taccagaaaaagggaaaag----tagaggtaCTA--------Caactcat----gaa-------------gaggcaaagg i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118083268 68 + 175225315 CCACATACAAAGGAAACAG----CATAAGACTAA----GTAGTGACTACTCAGCAGCCACCATG-GA---GGCGAGAAGG i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328893 57 - 2387735 gaaaaggggaaggacagag----aagaagagga--------------acacgaaagcaacgaaa-ga---ga-gagaaaa i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 259 68 + 596 TTACCTACAAAGGACATCC----CATCAGGCTAA----CAGCAGATCTCTCATCGGAAACAATA-CG---AGCGAGGAGA i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1190998 66 + 3338395 CCAGATAAATATACCACAC----TTCAATGCTAC------CCTGACCTATCTGCACATACTATG-AA---AAAACGTAAA i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 357861 72 + 495207 TCGAATggaagaatgagaa----aaaaaatacaaatgtatcAAGATCTACCGAAGGAGATAgtg-ga---caaaagaaaa i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940675 68 - 107808587 TAACATATAAAGGCAAGCC----TATCAGAATTA----CACCAGATTTTTCACCAGAGACTATG-AA---AGCCAGAAGA i tetNig2.chrUn_random C 0 C 0 s gadMor1.HE569330 825 66 - 5596 TTATGTACAACAACCGACA----GGTCAAACTTT----TCTCAGACTTTTCAGCCGA---CGTGCAA---CGCCAGCGGA i gadMor1.HE569330 C 0 I 2 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e danRer7.chr11 12642740 136 + 46661319 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-50310.000000 s mm10.chr1_GL456221_random 151029 26 + 206961 GCCTGGACA----------------------GATGTTATAC----AGACACT s echTel1.scaffold_279063 47091 26 + 47590 ggatggagc----------------------aacatcttcc----aaaagct i echTel1.scaffold_279063 C 0 N 0 s monDom5.chr1 156860008 22 + 748055161 gggaagaac----------------------aatccaatcc--------att i monDom5.chr1 C 0 I 4 s sarHar1.chr2_GL842197_random 256897 52 - 270121 agaaagaacggAGGGGGATgatcatagtgtgaatcttacacTCATCAGAACT i sarHar1.chr2_GL842197_random C 0 I 4 s taeGut1.chrUn 118083336 26 + 175225315 CAGTGGCAC----------------------gatatattta----aaattct i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328950 11 - 2387735 aag-------------------------------------a----agagact i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 327 26 + 596 GAATGGGAA----------------------AATATATTCA----AAGTATT i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1191064 26 + 3338395 GACTTTGCA----------------------CAAGTAACAG----CAATACT i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 357933 26 + 495207 aagtttgac----------------------gGAATAAGAA----AGACCTG i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940743 26 - 107808587 GCCTGGACA----------------------GATGTTATAC----AGACACT i tetNig2.chrUn_random C 0 C 0 s gadMor1.HE569330 893 26 - 5596 GCCTACTAT----------------------GCGGTGAAAC----AGACTCT i gadMor1.HE569330 I 2 I 7 s danRer7.chr11 12642876 15 + 46661319 ---------------------------------aactagac----ggaggcg i danRer7.chr11 I 136 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-19494.000000 s mm10.chr1_GL456221_random 151055 16 + 206961 AAGAGAA-CACAA-ATGC s monDom5.chr1 156860034 16 + 748055161 aagagaa-tagat-ttgc i monDom5.chr1 I 4 I 92 s sarHar1.chr2_GL842197_random 256953 17 - 270121 caaagag-aaaatattac i sarHar1.chr2_GL842197_random I 4 I 2 s taeGut1.chrUn 118083362 16 + 175225315 gagtGAG-AAAAA-TTTC i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328961 10 - 2387735 gcgagag--------TTC i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 353 16 + 596 AAGGGAA-AAGCA-ATTT i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1191090 17 + 3338395 GAGAGAGGCAGAC-ATAC i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 357959 17 + 495207 CAGGGAG-CATGGAATAT i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940769 16 - 107808587 AAGAGAA-CACAAACTG- i tetNig2.chrUn_random C 0 C 0 s gadMor1.HE569330 926 16 - 5596 AAGGGAA-TAGAGTATG- i gadMor1.HE569330 I 7 C 0 s danRer7.chr11 12642891 12 + 46661319 ccgagaa-taaa----g- i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-29753.000000 s mm10.chr1_GL456221_random 151071 31 + 206961 CAGCC-----TA--GGCTACT---ATACCTGGCCAAACTCT s sarHar1.chr2_GL842197_random 256972 33 - 270121 atatt-----tg--gtttacagaaaaacttctcCCAACGc- i sarHar1.chr2_GL842197_random I 2 C 0 s taeGut1.chrUn 118083378 31 + 175225315 CAGCC-----AA--GAATACT---TTATCCAGCAAAGCTCT i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2328971 36 - 2387735 TCGCCAGATAAG--GAAGATA---TCGACTTGGGAAACTAT i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 369 32 + 596 CAACC----GAA--AAATTCT---GTACCCAGCAAGGTTAT i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1191107 29 + 3338395 ------CATATA--GATGGCT---ATTCCCAGTAAAGCTA- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 357976 30 + 495207 ------GAATGG--GAACTAG---ATATCTGGCAATTTTGT i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63940785 31 - 107808587 CAGCC-----CA--GGCTACT---ATACCCAGCCAAACTCt i tetNig2.chrUn_random C 0 N 0 s gadMor1.HE569330 942 24 - 5596 --------------GCCTTCA---ATACCCCGCCAAACTTC i gadMor1.HE569330 C 0 C 0 s danRer7.chr11 12642903 33 + 46661319 cagcg-----cgatgctgaca---gaacaaacacaaacact i danRer7.chr11 C 0 I 20 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr1 156860050 92 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-34376.000000 s mm10.chr1_GL456221_random 151102 34 + 206961 CAATTACCATA-GA--TGGAGAAACCAAAGTATTCCA s sarHar1.chr2_GL842197_random 257005 25 - 270121 --attg--aaa-ag--tggaaggggaaaaggg----- i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118083409 34 + 175225315 CCTTCAAATTT-GA--GGGAGAGCTTAAATTTTTCAC i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329007 17 - 2387735 AGACTAAACTT-AA--GGGG----------------- i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 401 34 + 596 CGTTCATTTGG-GA--AGAAAAGACACGAACTTTCCC i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1191136 23 + 3338395 ------------AG--AGTAGTGTATAAAGACACTCC i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 358006 34 + 495207 TGTTAACTAAA-GA--TGGAGAAACCAGAAAATTTAT i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27809782 34 - 107808587 CAATTACCATA-GA--GGGAGAAACCAAATTATTCCA i tetNig2.chrUn_random N 0 C 0 s gadMor1.HE569330 966 34 - 5596 -GGGTGACATATGA--GGGCAAGGTCATCGTCTTCCA i gadMor1.HE569330 C 0 N 0 s danRer7.chr11 12642956 26 + 46661319 tgagggacgca-gagcgtgcgcggcca---------- i danRer7.chr11 I 20 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr1 156860050 92 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-26127.000000 s mm10.chr1_GL456221_random 151136 25 + 206961 CGACAAAA-ACAAATTCACACAATAT s sarHar1.chr2_GL842197_random 257030 21 - 270121 ----aaaa-gggaaggggcaggataa i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118083443 26 + 175225315 AGACAAAACAAATGCTGAGAGAATTT i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329024 13 - 2387735 ---------AAATAC----AGAAATA i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 435 25 + 596 AGATAAAC-AAAACCTGAAAGAATTT i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1191159 18 + 3338395 ATACATAA--------TGGACACACC i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 358040 7 + 495207 AAACTGT------------------- i latCha1.JH128317 C 0 I 7 s tetNig2.chrUn_random 27809816 25 - 107808587 CAACAAAA-CCAAATTCACACATTAT i tetNig2.chrUn_random C 0 C 0 s danRer7.chr11 12642982 21 + 46661319 catcaagc-gccagcgcacaca---- i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e monDom5.chr1 156860050 92 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-13839.000000 s mm10.chr1_GL456221_random 151161 18 + 206961 CTTTCCACGAATCCA-----GCC s sarHar1.chr2_GL842197_random 257051 18 - 270121 atagaagggaataca-----gaa i sarHar1.chr2_GL842197_random C 0 I 1 s taeGut1.chrUn 118083469 18 + 175225315 GCTAACAAGAGACCT-----GCC i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329037 6 - 2387735 GCGAAC----------------- i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 460 18 + 596 ACCAGCACCAGACCG-----GAT i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1191177 18 + 3338395 ACAGCAAGGGAACCA-----TCT i xenTro3.GL172702 C 0 I 1 s tetNig2.chrUn_random 27809841 18 - 107808587 CTTTCCATGAATCCA-----GCC i tetNig2.chrUn_random C 0 C 0 s danRer7.chr11 12643003 23 + 46661319 ctctgcgtacacccacgacggcg i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e latCha1.JH128317 358047 7 + 495207 I e monDom5.chr1 156860050 92 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=1343.000000 s mm10.chr1_GL456221_random 151179 3 + 206961 CTT s monDom5.chr1 156860142 3 + 748055161 cta i monDom5.chr1 I 92 C 0 s sarHar1.chr2_GL842197_random 257070 3 - 270121 ttg i sarHar1.chr2_GL842197_random I 1 C 0 s taeGut1.chrUn 118083487 3 + 175225315 CTA i taeGut1.chrUn C 0 C 0 s chrPic1.AHGY01493446 478 3 + 596 CTC i chrPic1.AHGY01493446 C 0 C 0 s xenTro3.GL172702 1191196 3 + 3338395 CTA i xenTro3.GL172702 I 1 I 4 s tetNig2.chrUn_random 27809859 3 - 107808587 CTT i tetNig2.chrUn_random C 0 C 0 s danRer7.chr11 12643026 3 + 46661319 cgc i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e latCha1.JH128317 358047 7 + 495207 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e anoCar2.chrUn_GL343225 2329043 0 - 2387735 C e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=396.000000 s mm10.chr1_GL456221_random 151182 1 + 206961 C s monDom5.chr1 156860145 1 + 748055161 c i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257073 1 - 270121 a i sarHar1.chr2_GL842197_random C 0 C 0 s taeGut1.chrUn 118083490 1 + 175225315 C i taeGut1.chrUn C 0 I 11 s anoCar2.chrUn_GL343225 2329043 1 - 2387735 C i anoCar2.chrUn_GL343225 C 0 I 11 s chrPic1.AHGY01493446 481 1 + 596 C i chrPic1.AHGY01493446 C 0 I 11 s latCha1.JH128317 358054 1 + 495207 C i latCha1.JH128317 I 7 C 0 s tetNig2.chrUn_random 27809862 1 - 107808587 C i tetNig2.chrUn_random C 0 C 0 s danRer7.chr11 12643029 1 + 46661319 g i danRer7.chr11 C 0 C 0 e ornAna1.chr7 32355515 497 + 40039088 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e xenTro3.GL172702 1191199 4 + 3338395 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-72594.000000 s mm10.chr1_GL456221_random 151183 49 + 206961 AAAGGATA---ATAAC------AGAAAAGAAGCAA---TACAA---------GGACAGAAATCA------C---GCCCT s monDom5.chr1 156860146 37 + 748055161 aggggaaa--------------ataagggagggaa---taaga---------agggaggggg----------------t i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257074 53 - 270121 aagggaaaggtttaag------aaaagaggaggaactCTAAGA---------TGAGGAgaagga-----------tcct i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 148 46 + 2363 aaagggga---ctaa-------aagggaggggggc---taaaa---------gaaggaggggaa-----------ggct i ornAna1.Contig81590 n 497 C 0 s taeGut1.chrUn 118083502 46 + 175225315 AAGGGAGC---CCTAca-----gacagagaaacaa---agaaa---------ggacAGAGAG-------------ACTT i taeGut1.chrUn I 11 C 0 s anoCar2.chrUn_GL343225 2329055 42 - 2387735 aaggaagc---acagga-----ggaaggtgtggaa---agaga---------ggaagaagag----------------- i anoCar2.chrUn_GL343225 I 11 C 0 s chrPic1.AHGY01493446 493 41 + 596 AAGGGAGT---GCTAT------GTCAGTAAAATTA---GATGC---------AGACACACAG----------------- i chrPic1.AHGY01493446 I 11 C 0 s xenTro3.GL172702 1191203 56 + 3338395 AATGGTCA---CTACTACCACCACAAGAAACGCCG---CAAAAACAACCACCAAAAAAACAA----------------- i xenTro3.GL172702 I 4 I 4 s latCha1.JH128317 358055 52 + 495207 AAAAAACT---TTCTT------AGAGAGCAGAGAA---TTCAA---------GAAAAGTAAACG------CGCAGACCT i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27809863 49 - 107808587 AAAGgata---ataac------agaaaaaaatcaa---tacaa---------gGAAAGAAATTACACACT--------- i tetNig2.chrUn_random C 0 C 0 s danRer7.chr11 12643030 43 + 46661319 cgcacaca---gagac------agaaacaggacca---gacat---------gagtagtgtcaa--------------- i danRer7.chr11 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-100969.000000 s mm10.chr1_GL456221_random 151232 22 + 206961 AGA-----------------ACAACCAAGAAAG--------TAATC---A------------------------- s monDom5.chr1 156860183 32 + 748055161 agaaag------------ggaaatacaagggggac------tgatttaaa------------------------- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257127 38 - 270121 aaagag------------ggagggctatGTGAGGCTagtggtgctcataa------------------------- i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 194 26 + 2363 gcagga------------ggagggggagAAAAG--------TGAAT----------------------------- i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118083548 32 + 175225315 GGAGAAAGGTTCAGTACTAAAGAGATTCGGTA------------------------------------------- i taeGut1.chrUn C 0 I 4 s anoCar2.chrUn_GL343225 2329097 13 - 2387735 gaagaa------------aaagaga-------------------------------------------------- i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01493446 534 32 + 596 AAATAAGAGTTCAGAAACTAAGAAAATGGGCA------------------------------------------- i chrPic1.AHGY01493446 C 0 N 0 s latCha1.JH128317 358107 30 + 495207 GGAGCA--ACCCTATCATAAGCAAAACTGgta------------------------------------------- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27809912 22 - 107808587 -------------------------------------------------AGAAAAAGCAAGAAAGTAA----TCC i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold949 53011 25 - 66997 --------------------------------------------------AGAGCAGCCTGAAAGCTGTCTTTCC i oryLat2.scaffold949 N 0 C 0 s danRer7.chr11 12643073 6 + 46661319 -------------------------------------------------------agc--------------tct i danRer7.chr11 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e xenTro3.GL172702 1191259 4 + 3338395 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-73049.000000 s mm10.chr1_GL456221_random 151254 24 + 206961 TTCAACAAACCAACA----AGAA-GAC-----------A---------------G s monDom5.chr1 156860215 26 + 748055161 gtaaatcactggact----aaaa-ggt-----------a-g------------ag i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257165 25 - 270121 gtctaTTACTGG-TG----AGGG-Ggt-----------a-a------------gg i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 220 22 + 2363 ----ACTATTGAGTA----GGGG-AAG-----------G-G------------ag i ornAna1.Contig81590 C 0 I 1 s taeGut1.chrUn 118083584 22 + 175225315 --------TACAATA----AAAG-GAT-----------A-T--------TAATag i taeGut1.chrUn I 4 I 1 s anoCar2.chrUn_GL343225 2329110 2 - 2387735 -----------------------------------------------------ag i anoCar2.chrUn_GL343225 C 0 I 1 s xenTro3.GL172702 1191263 31 + 3338395 --------TTCAACA----AGAATGGC-----------A-AACTACCAAAAACAG i xenTro3.GL172702 I 4 C 0 s latCha1.JH128317 358137 24 + 495207 tgtaagaaaagaaaa----attg-gag-----------a-a-------------- i latCha1.JH128317 C 0 I 1 s tetNig2.chrUn_random 27809934 24 - 107808587 Ctcaacaaaccaaaa----agaa-gAC-----------A-G-------------- i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold949 53036 24 - 66997 CTCATC-AGCTAAAA----TCCA-GAC-----------ACA-------------- i oryLat2.scaffold949 C 0 C 0 s danRer7.chr11 12643079 39 + 46661319 gccaccaaaacaagaatttacga-gaccaaagtggcaga-a-------------- i danRer7.chr11 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-72.000000 s mm10.chr1_GL456221_random 151278 1 + 206961 C s eriEur1.scaffold_349097 4936 1 + 49238 t i eriEur1.scaffold_349097 N 0 I 9 s monDom5.chr1 156860241 1 + 748055161 c i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257190 1 - 270121 g i sarHar1.chr2_GL842197_random C 0 C 0 s xenTro3.GL172702 1191294 1 + 3338395 C i xenTro3.GL172702 C 0 C 0 s tetNig2.chrUn_random 27809958 1 - 107808587 C i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold949 53060 1 - 66997 T i oryLat2.scaffold949 C 0 C 0 s danRer7.chr11 12643118 1 + 46661319 c i danRer7.chr11 C 0 C 0 e ornAna1.Contig81590 242 1 + 2363 I e latCha1.JH128317 358161 1 + 495207 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e anoCar2.chrUn_GL343225 2329112 1 - 2387735 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e taeGut1.chrUn 118083606 1 + 175225315 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=6898.000000 s mm10.chr1_GL456221_random 151279 7 + 206961 CACAAGA s monDom5.chr1 156860242 7 + 748055161 tgaagaa i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257191 7 - 270121 tgaaagg i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 243 7 + 2363 cgggaga i ornAna1.Contig81590 I 1 C 0 s taeGut1.chrUn 118083607 7 + 175225315 cagaggg i taeGut1.chrUn I 1 C 0 s anoCar2.chrUn_GL343225 2329113 7 - 2387735 aagaaga i anoCar2.chrUn_GL343225 I 1 C 0 s xenTro3.GL172702 1191295 7 + 3338395 CACAAGA i xenTro3.GL172702 C 0 I 526 s latCha1.JH128317 358162 6 + 495207 -aagaga i latCha1.JH128317 I 1 I 1 s tetNig2.chrUn_random 27809959 7 - 107808587 CACAAGA i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold949 53061 7 - 66997 CACAAAA i oryLat2.scaffold949 C 0 C 0 s danRer7.chr11 12643119 7 + 46661319 cctgaca i danRer7.chr11 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4937 9 + 49238 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-1236.000000 s mm10.chr1_GL456221_random 151286 2 + 206961 AC s monDom5.chr1 156860249 2 + 748055161 ga i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257198 2 - 270121 aa i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 250 2 + 2363 gt i ornAna1.Contig81590 C 0 I 2 s taeGut1.chrUn 118083614 2 + 175225315 ga i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329120 2 - 2387735 ag i anoCar2.chrUn_GL343225 C 0 C 0 s latCha1.JH128317 358169 2 + 495207 ga i latCha1.JH128317 I 1 C 0 s tetNig2.chrUn_random 27809966 2 - 107808587 AC i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold949 53068 2 - 66997 AT i oryLat2.scaffold949 C 0 C 0 s danRer7.chr11 12643126 2 + 46661319 GT i danRer7.chr11 C 0 I 7 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e xenTro3.GL172702 1191302 526 + 3338395 I e eriEur1.scaffold_349097 4937 9 + 49238 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-1576.000000 s mm10.chr1_GL456221_random 151288 3 + 206961 AGA- s eriEur1.scaffold_349097 4946 3 + 49238 aac- i eriEur1.scaffold_349097 I 9 C 0 s tetNig2.chrUn_random 27809968 3 - 107808587 -AGA i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold949 53070 2 - 66997 -GA- i oryLat2.scaffold949 C 0 C 0 e ornAna1.Contig81590 252 2 + 2363 I e latCha1.JH128317 358171 0 + 495207 C e sarHar1.chr2_GL842197_random 257200 0 - 270121 C e monDom5.chr1 156860251 0 + 748055161 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e xenTro3.GL172702 1191302 526 + 3338395 I e anoCar2.chrUn_GL343225 2329122 0 - 2387735 C e sorAra1.scaffold_221719 31531 644 + 35690 I e danRer7.chr11 12643128 7 + 46661319 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e taeGut1.chrUn 118083616 0 + 175225315 C e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=2142.000000 s mm10.chr1_GL456221_random 151291 4 + 206961 ATGC s eriEur1.scaffold_349097 4949 4 + 49238 aagg i eriEur1.scaffold_349097 C 0 I 1089 s monDom5.chr1 156860251 4 + 748055161 aagg i monDom5.chr1 C 0 I 3 s sarHar1.chr2_GL842197_random 257200 4 - 270121 agag i sarHar1.chr2_GL842197_random C 0 I 7 s ornAna1.Contig81590 254 4 + 2363 aaag i ornAna1.Contig81590 I 2 I 3 s taeGut1.chrUn 118083616 4 + 175225315 aaaa i taeGut1.chrUn C 0 I 11 s anoCar2.chrUn_GL343225 2329122 4 - 2387735 aaaa i anoCar2.chrUn_GL343225 C 0 I 7 s latCha1.JH128317 358171 4 + 495207 aggg i latCha1.JH128317 C 0 I 10 s tetNig2.chrUn_random 27809971 4 - 107808587 ATGC i tetNig2.chrUn_random C 0 C 0 s gadMor1.HE567998 1118370 4 - 2256342 ATGT i gadMor1.HE567998 N 0 C 0 s danRer7.chr11 12643135 4 + 46661319 AGAT i danRer7.chr11 I 7 C 0 e oryLat2.scaffold949 53072 0 - 66997 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e xenTro3.GL172702 1191302 526 + 3338395 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-49544.000000 s mm10.chr1_GL456221_random 151295 10 + 206961 CAACTC-----TAAC------ s monDom5.chr1 156860258 15 + 748055161 gaattagggaaggat------ i monDom5.chr1 I 3 C 0 s sarHar1.chr2_GL842197_random 257211 12 - 270121 taatttgg---ggat------ i sarHar1.chr2_GL842197_random I 7 C 0 s ornAna1.Contig81590 261 11 + 2363 -aaatggt---ggga------ i ornAna1.Contig81590 I 3 C 0 s taeGut1.chrUn 118083631 4 + 175225315 TAAA----------------- i taeGut1.chrUn I 11 I 3 s anoCar2.chrUn_GL343225 2329133 4 - 2387735 gaag----------------- i anoCar2.chrUn_GL343225 I 7 I 3 s xenTro3.GL172702 1191828 5 + 3338395 CAAGC---------------- i xenTro3.GL172702 I 526 C 0 s latCha1.JH128317 358185 3 + 495207 taa------------------ i latCha1.JH128317 I 10 I 12 s tetNig2.chrUn_random 27809975 10 - 107808587 -----------CAACTctaac i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold949 53072 4 - 66997 -----------------TGGT i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1118374 9 - 2256342 -----------TAACTTTTA- i gadMor1.HE567998 C 0 C 0 s danRer7.chr11 12643139 8 + 46661319 -----------TTGCTATA-- i danRer7.chr11 C 0 N 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=2480.000000 s mm10.chr1_GL456221_random 151305 4 + 206961 AACA s monDom5.chr1 156860273 4 + 748055161 atca i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257223 4 - 270121 aata i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 272 4 + 2363 aaga i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118083638 4 + 175225315 AAGG i taeGut1.chrUn I 3 C 0 s anoCar2.chrUn_GL343225 2329140 4 - 2387735 AATG i anoCar2.chrUn_GL343225 I 3 C 0 s chrPic1.JH584471 11614896 4 + 14749333 aaca i chrPic1.JH584471 N 0 C 0 s xenTro3.GL172702 1191833 4 + 3338395 AACC i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 358200 4 + 495207 aaaa i latCha1.JH128317 I 12 C 0 s tetNig2.chrUn_random 27809985 4 - 107808587 aaca i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold949 53076 4 - 66997 GGAT i oryLat2.scaffold949 C 0 C 0 e gadMor1.HE567998 1118383 0 - 2256342 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-54822.000000 s mm10.chr1_GL456221_random 151309 26 + 206961 AAAATAAAAGGAAGCA--ACAA-----------TTACTT s monDom5.chr1 156860277 26 + 748055161 aaatgccagggagtcc--acaa-----------gtgaca i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257227 26 - 270121 aaatgacaggaaatac--aaaa-----------ttagta i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 276 26 + 2363 gggtggagggaaatac--acag-----------attgta i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118083642 32 + 175225315 ATAAGATGGCCGATTC--AAGA-----AATGCCTTCACG i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329144 27 - 2387735 Ctaa----gtgaaata--aaaa-----tatacattaac- i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11614900 37 + 14749333 aaaaaatgggtaaaaa--aaaattaggaatacTTTGGTG i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1191837 20 + 3338395 CACACCCATGGCATCC--ACAA----------------- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 358204 20 + 495207 aaagaatggagagaTC--ATCT----------------- i latCha1.JH128317 C 0 I 848 s tetNig2.chrUn_random 27809989 26 - 107808587 aaaataataggAAGCA--ACAA-----------TTACTT i tetNig2.chrUn_random C 0 C 0 s oryLat2.scaffold949 53080 13 - 66997 AAAACTATAAGAA-------------------------- i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1118383 28 - 2256342 AAGACAGAAGGAAGGGGTACTG-----------TTATCC i gadMor1.HE567998 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-8365.000000 s mm10.chr1_GL456221_random 151335 4 + 206961 TTCC-- s monDom5.chr1 156860303 3 + 748055161 gtc--- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257253 3 - 270121 gtt--- i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 302 3 + 2363 atc--- i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118083674 3 + 175225315 GTT--- i taeGut1.chrUn C 0 C 0 s chrPic1.JH584471 11614937 3 + 14749333 CTC--- i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1191857 2 + 3338395 -TA--- i xenTro3.GL172702 C 0 C 0 s tetNig2.chrUn_random 27810015 4 - 107808587 -TT-CC i tetNig2.chrUn_random C 0 C 0 s gadMor1.HE567998 1118411 4 - 2256342 -TT-AT i gadMor1.HE567998 C 0 I 13 e latCha1.JH128317 358224 848 + 495207 I e oryLat2.scaffold949 53093 0 - 66997 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e anoCar2.chrUn_GL343225 2329171 0 - 2387735 C e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-96.000000 s mm10.chr1_GL456221_random 151339 1 + 206961 T s tetNig2.chrUn_random 27810019 1 - 107808587 T i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 183377 1 + 1571857 T i oreNil2.GL831313-1 N 0 C 0 s gadMor1.HE567998 1118428 1 - 2256342 A i gadMor1.HE567998 I 13 C 0 e ornAna1.Contig81590 305 0 + 2363 C e latCha1.JH128317 358224 848 + 495207 I e oryLat2.scaffold949 53093 0 - 66997 C e sarHar1.chr2_GL842197_random 257256 0 - 270121 C e monDom5.chr1 156860306 0 + 748055161 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e xenTro3.GL172702 1191859 0 + 3338395 C e anoCar2.chrUn_GL343225 2329171 0 - 2387735 C e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 31531 644 + 35690 I e chrPic1.JH584471 11614940 0 + 14749333 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e taeGut1.chrUn 118083677 0 + 175225315 C e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=2730.000000 s mm10.chr1_GL456221_random 151340 2 + 206961 TA s latCha1.JH128317 359072 2 + 495207 ta i latCha1.JH128317 I 848 C 0 s tetNig2.chrUn_random 27810020 2 - 107808587 TA i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 183378 2 + 1571857 TA i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 53093 2 - 66997 TA i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1118429 2 - 2256342 TA i gadMor1.HE567998 C 0 C 0 e ornAna1.Contig81590 305 0 + 2363 C e sarHar1.chr2_GL842197_random 257256 0 - 270121 C e monDom5.chr1 156860306 0 + 748055161 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e xenTro3.GL172702 1191859 0 + 3338395 C e anoCar2.chrUn_GL343225 2329171 0 - 2387735 C e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 31531 644 + 35690 I e chrPic1.JH584471 11614940 0 + 14749333 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e taeGut1.chrUn 118083677 0 + 175225315 C e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-4647.000000 s mm10.chr1_GL456221_random 151342 9 + 206961 ATATCTCTT s monDom5.chr1 156860306 9 + 748055161 ataacgttg i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257256 9 - 270121 ttaaccata i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 305 9 + 2363 ataactgtg i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118083677 9 + 175225315 ATAACGTTG i taeGut1.chrUn C 0 C 0 s chrPic1.JH584471 11614940 4 + 14749333 CTAG----- i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1191859 9 + 3338395 ACTACCTTA i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 359074 9 + 495207 gtaaCCTGG i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27810022 9 - 107808587 ATATCTATT i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 183380 9 + 1571857 ATATCCTTT i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 142587 9 + 23295652 ATAAGTTAT i gasAcu1.chrII N 0 C 0 s oryLat2.scaffold949 53095 9 - 66997 ATTTCCTAT i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1118431 9 - 2256342 GTGAGTTAT i gadMor1.HE567998 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e anoCar2.chrUn_GL343225 2329171 0 - 2387735 C e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=63554.000000 s mm10.chr1_GL456221_random 151351 11 + 206961 AATATCAATGG s monDom5.chr1 156860315 11 + 748055161 aacatgaatgg i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257265 11 - 270121 aatgtgaatgg i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 314 11 + 2363 aatgtgaatgg i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118083686 11 + 175225315 AATGTAAATGG i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329171 11 - 2387735 aATGTTAACGG i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11614944 11 + 14749333 AATGTTAGGGC i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1191868 11 + 3338395 AACGTAAATGG i xenTro3.GL172702 C 0 I 1 s latCha1.JH128317 359083 11 + 495207 AATGTAAAGGG i latCha1.JH128317 C 0 I 1 s tetNig2.chrUn_random 27810031 11 - 107808587 AATATCAATGG i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 183389 11 + 1571857 GATGTAAATGG i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 142596 11 + 23295652 AATGTCAAAGG i gasAcu1.chrII C 0 C 0 s oryLat2.scaffold949 53104 11 - 66997 AATGTAAATGG i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1118440 11 - 2256342 AATGTCCATGG i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8294788 11 - 42261000 aatgtcagagg i danRer7.chr22 N 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 31531 644 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-3468.000000 s mm10.chr1_GL456221_random 151362 1 + 206961 A s sorAra1.scaffold_221719 32175 1 + 35690 A i sorAra1.scaffold_221719 I 644 I 320 s monDom5.chr1 156860326 1 + 748055161 g i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257276 1 - 270121 g i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 325 1 + 2363 g i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118083697 1 + 175225315 A i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329182 1 - 2387735 C i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11614955 1 + 14749333 A i chrPic1.JH584471 C 0 C 0 s tetNig2.chrUn_random 27810042 1 - 107808587 A i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 183400 1 + 1571857 A i oreNil2.GL831313-1 C 0 I 3 s gasAcu1.chrII 142607 1 + 23295652 T i gasAcu1.chrII C 0 C 0 s oryLat2.scaffold949 53115 1 - 66997 T i oryLat2.scaffold949 C 0 I 3 s gadMor1.HE567998 1118451 1 - 2256342 G i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8294799 1 - 42261000 c i danRer7.chr22 C 0 C 0 e latCha1.JH128317 359094 1 + 495207 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e xenTro3.GL172702 1191879 1 + 3338395 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=9396.000000 s mm10.chr1_GL456221_random 151363 10 + 206961 CTCAATTCCC s monDom5.chr1 156860327 10 + 748055161 atgaactcac i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257277 10 - 270121 ataaactttt i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 326 10 + 2363 atgaactctc i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118083698 10 + 175225315 TTAAACTCCC i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329183 10 - 2387735 CTGAATTCAC i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11614956 10 + 14749333 CTAAACCACC i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1191880 10 + 3338395 TTGAACAGTC i xenTro3.GL172702 I 1 C 0 s latCha1.JH128317 359095 10 + 495207 TTAAGCTcat i latCha1.JH128317 I 1 C 0 s tetNig2.chrUn_random 27810043 10 - 107808587 CTCAATTCCC i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 183404 7 + 1571857 CTAAATC--- i oreNil2.GL831313-1 I 3 C 0 s gasAcu1.chrII 142608 10 + 23295652 CTCCATAGCC i gasAcu1.chrII C 0 C 0 s oryLat2.scaffold949 53119 7 - 66997 CTGAATC--- i oryLat2.scaffold949 I 3 C 0 s gadMor1.HE567998 1118452 10 - 2256342 CTAAACCATC i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8294800 10 - 42261000 atgaatcacc i danRer7.chr22 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32176 320 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-570163.000000 s mm10.chr1_GL456221_random 151373 322 + 206961 CAATAAAAAGACATAGAC---TAACAGACTG-----GCTACACAAACAGGACCCA--AC----------AT------TCTGCTGCT-TACGGGAAACCCATCT----------------CAGGGAAAAAGACAGA-CAC------TA---------------CT-TCAGA-----------GTGAAAGGCTGGAAAACAATTTT----CCAAG-------CAA-------------ATGGACTGAAGAAACAAGCT---GGAGTAGCCATTT---TA---------ATATCGGATAAAATCGACTTCC-----AACCCAAAGTTATCAAAA---------------AAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAATCCTCCAAGAGGAAC-TC----TCAATTC----TGAATATCTACGCACCAAATGCAAGGGCAGCCACATTCATTAGAGACAC s monDom5.chr1 156860337 322 + 748055161 ccataaa---acatagacaaatagcagagtg-----gattagaatccaaaaccct--ac----------ca------tatgttgtc-tccaagaaacacacat----------------gaggcgggtagaCACC-CAC------AA---------------GG-TCAGA-----------ATTAAAGGATGGAGTAAGACCTT----CTGGGC----CTCAA-------------CTGACAAAAAGA---AGGCA---GGAGTGGCAATCA---TG---------ATATCTGATAAAGCCAAAGCAA-----AAATAGACCTGATCAAAA---------------GGGACAGGGAAGGTAATTATATTTTGTTAAAAGGGACTTTAGACAATGAGGAAA-TA----TCATTAA----TCAACATGTATGCACCAAATAATATAGCACCCAAATTTCTAATGGAGAA i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257287 329 - 270121 ccataaa---gcagaggtggataacagactg-----gattaaaagccagaattct--at----------aa------tatgttgtt-tacaggaaacacactt----------------gaagaagACTGATAtg-tacagagtaaa---------------ag-taaaa-----------gtaaaaggctgcaGCAGAATCTA----Ctgtgc----ttcag-------------atgaagtcaaaa---aagta---ggggtagccatcc---tg---------atctcagatcaagcaaaagcaa-----aattttatctaattaaaa---------------gagataaggaagggcactatattttgctaaaggacaacatagataatgaagcaatta----acaatat----taaacatatatgaaccaagtggtatagtaCCTAAATCCCTAAAGGGGaa i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 336 322 + 2363 ccataaa---acggagacggatagcagaatg-----gattaaaagccataatcca--ac----------aa------tatgctgct-tacaagaaacacattt----------------gaaaCGGGGGGATACA-CAT------AG---------------GA-TAAAG-----------GTCAAAGGATGGAGCAGAATATA----TTGTGC----TTCAG-------------CTCATGTAAGAA---AGGCA---GGAGTAGCAATCC---TA---------ATCTCAGACAAAGCAAAAGCAG-----AAATAGATCTAATCAAAA---------------GGGATAAGGATGGAAACTATATCCTACTAAAAGGCACCATAGACAATGAAGCAA-TA----TCATTAC----TAAACATGTATGCTCCAAGTGGTATAGCATCCAGATTCTTAGAGGAGAG i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118083708 322 + 175225315 CAATTAA---AAGATATAGATTCACGGAATG-----GATCaaaaaaaaTGAACCA--TC----------AA------TATGTTGCA-TACAAGAGACTCATCT----------------TAGACACAGGGACACA-AAG------AA---------------AC-GGAAA-----------gtgaaaggagggaaaaaaatatt----tcatgcaaGGTACAG-------------CC----AAAAGA---AAGCA---GGTGTAGCAATAT---TA---------ATCTCAGATAAAATAGACTTCA-----AATGCAGGGATGTTTTGA---------------GAGACAAGGAAGGCCACTACATACTAATAAAAGGGGCAATTCAGCAAGAAGAAA-TA----ACAATCG----TAAATGTCTATGCACCCAATCAAGGTGCCACAAAATACATGAGAGAAAC i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329193 305 - 2387735 AATACAA---GAGAAATAAAATTTTTG-ACA-----CACTAAGCAAAAGAAATTG--TC----------AA------ATTATTGCATTGCAAGAGACACACAT----------------AGCCCACAGACATGTA-GCA------CA---------------TCTAGAAA-----------ATAAAAAGTTAG-GTAATGCATT----TTATGC-ATCTGCAG-------------CAG---AGAAGA---AAAAG---GGAGTGGTGACGTATGTACACAAGGACATCCCAGCAAAGTTGGCCTTCA-----AGGATGGGG-----------------------------AAGGAAGA----TTTGTAGGAGTAAATATCATGATACGGAATGTAAAAA-CA----TTGATAT----GCAACATTTATGCGCCAAAC----GACTCAAAAAAGACATT-------T i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11614966 293 + 14749333 caataaa---acaaaccaa---------aca-----aa-caagaaaaagatACTT--TCTCCTTTGAAAAA------GGAGTCGGT-AGCAGTAGTAATGCTT----------------TA-----AGAAACTTC-TCA------AA---------------AC-AAAAG-----------AAGTTAAGCTTA-AAAATGAATTGGTATCATGT---GTACAGAACTTTTCAGATCCC----ATAAGA---AA------GGAGTGTGTATTC---TA---------AT--------AAGTAGCTTGAG-----Aatgtaaacatatt------------------------aaaacaGA---------------------CCCAATGCACAGAGGGTAAA-CCTGTTACAGTAT----GTAACCCTTGTGTCCTAAATGACGAGGGCATctcatttttaataatatt i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1191890 321 + 3338395 CCAACAA---GAGATCCCAACTCATATACTG-----GGCCAAACGAGAAAAACCA--AA----------AA------TTCTATGTA-TCCAAGAAACCCATCT----------------AATAACAGGGCAACCT-ACC------AG---------------AC-TCACA-----------AACAAAGAATACCCCAACCAACT----ATATGC---AAACAG-------------CCCCA-TAAAGA---AAAAA---GGAGTAGCAATC----TG---------GTTTCATAAAACATTAACTCCACAAATAATCCAAGAACATCCTGA---------------CCCTGAGGGCAGA----TACCTTATTATACTAGCGCAAATACAAGGCCAAAACT-AC----ACAATAG----CCTCAGTATATGCCCCAA-CAACAAAGCAATCAGCATTCTACCGAAAAT i xenTro3.GL172702 C 0 I 1 s latCha1.JH128317 359105 323 + 495207 atattaa---aaggaaaaagatattAACATA-----TTTGAAAAAGAAGAGAGCA--GA----------CA------TAATATTTT-TACAGGAAACGCATAT----------------GATAAAGAAAGATGAG-AAA------AG---------------AT-TGAAG-----------ATTAATTGGATAGGGGATAGCTA----TTATAGCCGTTACAC-------------CAC---AAGAAA---AAAGA---GGAGTCACAATTT---TG---------TTTGCTAAAGCAATAAGGGCGG-----TAGTGCAAAAAGAAATAA---------------GAGATATGGAGGGTTGATTTATTGCAGTAATTGTTAAAATAAATGATATGCCCT-AT----ATTATGG----GAAATGTATATGGTCCAAACGTGGATGACCCCGATTTTTTCTTGGAAAT i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27810053 323 - 107808587 CAACAAA---AAGACATAGACTAACGGACAGGCTACACAAACAGGACCCAAAATT--CA----------GC-----------TGCT-TACAGGAAACTCATCTCAGGGAAAAAGACAGACACTACCTCAGAGtga----------aa---------------gg-ctgga-----------aaacaaTTTTC------------------------CAAGCAA-------------ATGGTCTGAAGA---AACAAGCTGGAGTAGCCATTC---TA---------ATATCGGATAAAATCGACTTCC-----AACCCAAAGTTATCAAAA---------------AAGACAAGGAGGGACACTTCATACTCATCAAAGGTAAAAATCC---TCCAAGAG-GA----ACTCTCAATTCTGAATATCTACGCTCCAAATGCAAGGGCAGCCACATTCATTAAAGACAC i tetNig2.chrUn_random C 0 C 0 s fr3.chr20 2970 316 + 13411851 caaaaaa---taaaaaaaggttaaCAAGTA------ATGAACAGAGTTAAAAGCTTACA----------GTCTAAAATAGTATTCC-TTCAAGAAACCTACTT------AATATACGAGGAGGAGCTCaaagtgaggag------ga---------------gg-tggaa-----------aggTAAAATTCTGTCAGCTCCCT----TTACCTCTCAAGCAA-------------GGGGTGTTATG--------ATCTTGATCCATGATTC---T---------------------ATTCCATTTCA-----AATTCATAA-TGTTAGCA---------------AAGATAAGGCAGGATGATATTTGATCATTCAAGGGAACAATT--------------A----ATTCTAA----TAAATgtttatgctccaaatacagaCGAACCCAAGTTTTTCCAAAATCT i fr3.chr20 N 0 C 0 s oreNil2.GL831313-1 183411 301 + 1571857 CGGTCAA---AAGAAGTAAGATTTTGTCTaa-----attaaaaagggaaaaggca--CA----------GG------TGGCTTTCC-TCCAGGAGACCCACCT----------------GAGTCAGTCAGAACAT-GAT------AA---------------AT-TGAGA-----------AGACAAGGTTTTAAAAACGTATT----TTCGTCTTCATACAA-------------GGGAAGACATAG---GAGA----GGAGTTGCTATAC---TT---------ATTTCAAATACAATTAATTATG-----AATATA----TATTAGAAC-----------TAcaggatggggagggaaggtTTATAAAAATTACGGGTAAAATTGAAGGTCAGGAAA-TG----ACgttta----taaatgtgtatattcC-----------------------TCCGGGATG- i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 142618 322 + 23295652 CTATTAA---GAGAAAGAAGATTATGCATCAG----ATGAAACAAGCCAACTGT---CA----------CA------TTGCATTTC-TTCAGGAAACTCATTT----------------ATCTGACGCAGAACAT-GAA------AA---------------GT-TGAAAGGATCTTGGGCAGATAAAGTAT------ATTACT----CTGCCCATCGGTCAG-------------GGAGAAAAAAAG-----------GGAGTATCCATAC---TC---------ATACACAGACAAATTAATTTCA-----CGCAGA----CACTAGTA---------------CACACAGACAGAGGAGATACGTCTTAGTTAATGGATTAATTGATGGCACAGAGG-TG----TCCCTCA----TTAATGTGTACGCACCTAATGAAGACGATCCTAGCTTTATTAGGGCGTT i gasAcu1.chrII C 0 C 0 s oryLat2.scaffold949 53126 325 - 66997 CTATTAA---Gagaagtaaaatattttcaaa-----gctaAAAAGGGAACGGGGA--CA----------AG------TGGTCTTCC-TACAGGAAACCCACCT----------------AACAGAGGCTGAACAT-GAA------AA---------------AC-TGAGG-----------AGAGGGggctttaaacacatttt----ttacacatcCTATTA-------------GTCAGGACACAG---AAGA----GGATCAGCTATTC---TA---------ATTTCAAATCAGGTCcaatatg-----aaaaca----tttcagaga-----------cCAAAGATAAAGAGGGTCGATATGTAATGATCATAGGAAGGATTGAAGGGTCCTTGG-TA----ACACTAC----TTAGTATATATGcccccccAGGAAGTGATTGgcaattttataaaaaagt i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1118462 302 - 2256342 ctataaa---aaggaaaaagataTTCTATCA-----GTTAAAGCAACTGCAGTGT--TC----------AA------TTGCGTTGC-TACAAGAAACCCACTT----------------ATCCGAGAAAGAACAT-AAA------TA---------------AA-CGTAA-----------ATTCAGTGTAT------AGTACC----T-----------CAA-------------ATGGGaaaaaaa---GA------GGGGTGGCGATTT---T---------------------AGTAAAACTCT-----GGC-------CTTTAGTGCAGAGAAGGTGGTGCAGGATAAATCAGGAAGATATGTCATGGTGGTTGGAAGTGTTGGAGGAAATGAAA-TT----TCCATTT----TGAATGTATATGCTCCAAACGAATATGATCCAGGTTTGTTCAAAGAAAT i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8294810 322 - 42261000 cagtgaa---aagacgtaaagtttataataa-----tataagcaagctatgcgcc--ga----------aa------tcatatttc-tgcaggagactcatat--------------------aaaacagactgc-taa------ggcacttcttaatcctcat-tgggc-----------agctcaaatatatcaatcaaatt----tttctaacaaatcta-------------gg---------------------ggagtggcgatta---ta---------ataaagaaaaatgttccattta-----tacataaac-agacaatat--------------ccgataaatatggcagatacataatcgttcgtggagaaataaacgcagtcccta-tt----acattgg----ttaatttgtatggtccaaattacgacgacccttctttcttcaataaact i danRer7.chr22 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32176 320 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-2395.000000 s mm10.chr1_GL456221_random 151695 2 + 206961 GT s sorAra1.scaffold_221719 32496 2 + 35690 Gc i sorAra1.scaffold_221719 I 320 I 320 s monDom5.chr1 156860659 2 + 748055161 AC i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257616 2 - 270121 tt i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 658 2 + 2363 GT i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084030 2 + 175225315 AC i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329498 2 - 2387735 AT i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11615259 2 + 14749333 tt i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1192212 1 + 3338395 -C i xenTro3.GL172702 I 1 I 1 s latCha1.JH128317 359428 1 + 495207 -T i latCha1.JH128317 C 0 I 1 s tetNig2.chrUn_random 27810376 2 - 107808587 TT i tetNig2.chrUn_random C 0 C 0 s fr3.chr20 3286 2 + 13411851 AT i fr3.chr20 C 0 C 0 s gasAcu1.chrII 142940 2 + 23295652 GT i gasAcu1.chrII C 0 C 0 s oryLat2.scaffold949 53451 2 - 66997 at i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1118764 2 - 2256342 TG i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8295132 2 - 42261000 ct i danRer7.chr22 C 0 C 0 e oreNil2.GL831313-1 183712 0 + 1571857 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-86513.000000 s mm10.chr1_GL456221_random 151697 22 + 206961 ------------TAGTAAAGC-TCAAAGCATACAT s monDom5.chr1 156860661 22 + 748055161 ------------TAGGAGAAT-TGAAGGAAGAAAT i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257618 22 - 270121 ------------taagagagc-tgcaagaagaaat i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 660 22 + 2363 ------------TGGGGGAGT-TGAATGAAGAAAT i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084032 21 + 175225315 ------------TGGCAAAAG-TAAAGGAAGCAA- i taeGut1.chrUn C 0 I 1 s anoCar2.chrUn_GL343225 2329500 21 - 2387735 ------------AGACAAGCT-ccaagaaaatat- i anoCar2.chrUn_GL343225 C 0 I 19 s chrPic1.JH584471 11615261 19 + 14749333 ------------tggaATGAC-TTCAGCAGTC--- i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1192214 18 + 3338395 ------------TCAAAGAAC-TAAATAAAC---- i xenTro3.GL172702 I 1 I 2 s latCha1.JH128317 359430 21 + 495207 ------------TAGAGAAAT-TGAGCAGTATGG- i latCha1.JH128317 I 1 C 0 s tetNig2.chrUn_random 27810378 22 - 107808587 T-----------AGTAAAGCT-CAAAGCACACAT- i tetNig2.chrUn_random C 0 C 0 s fr3.chr20 3288 10 + 13411851 T-----------TCTTA-------------CTAT- i fr3.chr20 C 0 C 0 s gasAcu1.chrII 142942 21 + 23295652 T-----------TAATTAGAT-CCTACAATACA-- i gasAcu1.chrII C 0 C 0 s oryLat2.scaffold949 53453 25 - 66997 TCAA--------TATTATGTC-CACAGAATCCCG- i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1118766 33 - 2256342 CGAACATCATTGCAGAAAATT-CAAAAGGTATGC- i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8295134 20 - 42261000 t-----------agttaaaatacctgatgcg---- i danRer7.chr22 C 0 C 0 e oreNil2.GL831313-1 183712 0 + 1571857 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32498 320 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-14997.000000 s mm10.chr1_GL456221_random 151719 4 + 206961 TGCA--- s monDom5.chr1 156860683 4 + 748055161 AGAC--- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257640 4 - 270121 acac--- i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 682 4 + 2363 TGAT--- i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084054 4 + 175225315 TGAT--- i taeGut1.chrUn I 1 C 0 s chrPic1.JH584471 11615280 4 + 14749333 CAAA--- i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1192234 4 + 3338395 AAAC--- i xenTro3.GL172702 I 2 C 0 s latCha1.JH128317 359451 3 + 495207 -GGG--- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27810400 4 - 107808587 ---TGCA i tetNig2.chrUn_random C 0 C 0 s fr3.chr20 3298 4 + 13411851 ---TGCC i fr3.chr20 C 0 N 0 s gadMor1.HE567998 1118799 1 - 2256342 ---T--- i gadMor1.HE567998 C 0 C 0 e gasAcu1.chrII 142963 0 + 23295652 C e oreNil2.GL831313-1 183712 0 + 1571857 C e oryLat2.scaffold949 53478 0 - 66997 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e anoCar2.chrUn_GL343225 2329521 19 - 2387735 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32498 320 + 35690 I e danRer7.chr22 8295154 0 - 42261000 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-6218.000000 s mm10.chr1_GL456221_random 151723 3 + 206961 CCT s monDom5.chr1 156860687 3 + 748055161 AGT i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257644 3 - 270121 agc i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 686 3 + 2363 AGC i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084058 3 + 175225315 GTT i taeGut1.chrUn C 0 C 0 s chrPic1.JH584471 11615284 3 + 14749333 ATT i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1192238 1 + 3338395 A-- i xenTro3.GL172702 C 0 I 4 s latCha1.JH128317 359454 3 + 495207 ATT i latCha1.JH128317 C 0 I 2 s tetNig2.chrUn_random 27810404 3 - 107808587 CCT i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 471 3 - 7085 CAT i fr3.HE594383 N 0 C 0 s gasAcu1.chrII 142963 3 + 23295652 GCT i gasAcu1.chrII C 0 C 0 e oreNil2.GL831313-1 183712 0 + 1571857 C e gadMor1.HE567998 1118800 0 - 2256342 C e oryLat2.scaffold949 53478 0 - 66997 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e anoCar2.chrUn_GL343225 2329521 19 - 2387735 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32498 320 + 35690 I e danRer7.chr22 8295154 0 - 42261000 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-97298.000000 s mm10.chr1_GL456221_random 151726 47 + 206961 CACA---------------C-AATAATAGTGGGA--GACG---------------TCAAC-----ACACCA----CTTT--CTTC---AATGGA s monDom5.chr1 156860690 47 + 748055161 AAAA---------------C-CATATTAGTGGGA--GACT---------------TAAAC-----CAACCA----TTAT--CAAA---TTTAGA i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257647 47 - 270121 aaaa---------------c-tgtaatagtggga--gatc---------------tcaaa-----cttgca----ctct--caga---agtaga i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 689 47 + 2363 AAAA---------------C-TATACTAGTGGGG--GACC---------------TCAAC-----CTCCCC----CTCT--CTGA---ACTCGA i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084061 47 + 175225315 TCCA---------------C-AATAATTGTGGGA--GACT---------------TCAAC-----ACATCA----CTCT--CTCC---TATAGA i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329540 38 - 2387735 -CAA---------------CTAATGATTGTAGGG--GACT---------------ACAAT-----GGAGTA------------------ATAGA i anoCar2.chrUn_GL343225 I 19 C 0 s chrPic1.JH584471 11615287 67 + 14749333 --CA---------------CGGAAAATAGTGGCAATGACTAACTGTTGTCTTAACTCAAT-----ATAGAATAGACTAT--CGCC---ATTAGG i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1192243 46 + 3338395 CGTA---------------T-AATAATAGGAGGA--GACT---------------TCAAC-----ATACCC----CTG---CAAC---ACCAAG i xenTro3.GL172702 I 4 C 0 s latCha1.JH128317 359459 50 + 495207 CCTA---------------T-TATTTTAGAAGGT--GATT---------------TCAAT-----ATGGTT----CCAG--ATAATTTTTTGGA i latCha1.JH128317 I 2 C 0 s tetNig2.chrUn_random 27810407 47 - 107808587 CACA---------------C-AATAATAGTGGGA--GACT---------------TCAAC-----ACACCA----CTTT--CATC---AATGGA i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 474 54 - 7085 CACA---------------T-AATAATTGGAGGT--GACT---------------TCAACCAGGTCCAGGA----CCTTGACCTC---GATAGA i fr3.HE594383 C 0 I 58 s oreNil2.GL831313-1 183712 39 + 1571857 -----------------------TAACTGGacaa--tata---------------taaac------aaata----tttg--attt---aatggt i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 142966 51 + 23295652 CAGGAT----TGC------T-ACTGATGGGGGGA--GACA---------------TGAAC------TGCGT----AATG--TCGC---AATTGA i gasAcu1.chrII C 0 I 6 s oryLat2.scaffold949 53478 51 - 66997 -----CGGGATAC------T-TATAAGTGGAGGA--GATA---------------TGAAC-----ATAAGA----TAAA--CAAA---GAAGGA i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1118800 37 - 2256342 ---------------------AATAACTGGAGGG--GACT---------------TCAAT-----GCAGTG----CAAG----------ATGGG i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8295154 48 - 42261000 ------gctttacaaaatgt-aattattggggga--gatt---------------ttaat-----------------TG--TGTC---ATTGAC i danRer7.chr22 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32498 320 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-303302.000000 s mm10.chr1_GL456221_random 151773 56 + 206961 ------------------------CAGATCGTGGA-----AAC------------------------AGAAACTAAACAGGG---------------------------ACACAGTGAA-----------------------AC----TAACA----------------------------------G----AAGTTATGA------- s monDom5.chr1 156860737 56 + 748055161 ------------------------TAAATC---AT-----ATC------------------------AAAAAATAAATAAGA---------------------------AAGAGGTAAA-----------------------AGAAG-TAAAT----------------------------------G----AAATCTTAG------- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257694 57 - 270121 ------------------------taaatc---aa-----acc------------------------aaaaaataaataaga---------------------------aagaagtaaa-----------------------aaaagataaat----------------------------------a----gaacactag------- i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 736 55 + 2363 ------------------------TAAATC---CA-----ACC------------------------TTAAA-TAAACAAGA---------------------------AAGAGGTTAA-----------------------GGAGG-TAAAT----------------------------------A----AAACTCTGA------- i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084108 56 + 175225315 ------------------------TAGATC---AACCT--GAC------------------------AGAAG---ACCAATA---------------------------AGGAAATTGA-----------------------AAACC-TAAAC----------------------------------A----ATCTGATAA------- i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329578 92 - 2387735 ------------------------CGgaag---aata---gat------------------------agaagtaaagaaaca---------------------------gagaagaaga-----------------------aagaC-AAAACAAGTAATTCGGGTAACCTACCAAAACAAATGATAA----ATATGTTAA------- i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11615354 47 + 14749333 ------------------------C---------------AAT------------------------GTAAGTCCATCaaaa---------------------------aaaGCTCAGA-----------------------TGCTG-GAATC----------------------------------A----GCATAT--A------- i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1192289 78 + 3338395 ------------------------CAGATA---CAAA---ATC------------------------AGAAA---AGCAAAA---------------------------AAATGCAAGACCAGAAACCTCCACCCATGCCTTAAACC-TAAAG----------------------------------A----AACACCTAA------- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 359509 62 + 495207 ------------------------TAAGTC---TAAATTGGGC------------------------AAGAAACATTCAACA---------------------------AGATCTCAAA-----------------------AGGTCATAAAG----------------------------------C----ACATGAACA------- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27810454 56 - 107808587 CAGATCGT---------------------G---GA-----AAC------------------------AGAAACTAAACAGGG---------------------------ACAC-----A-----------------------G-----TGAAA----------------------------------C----TAAC-AGAAGTTATGA i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 183751 51 + 1571857 GAATTCAC---------------------A---AG-----GTC------------------------TGGTAATCTGTGGAG------------------------------------------------------------G-----TGATT----------------------------------T----CAAT-ATTAGATTGAA i oreNil2.GL831313-1 C 0 I 6 s gasAcu1.chrII 143023 55 + 23295652 GACATCCTCC--------------CTCTAA---AG-----CTC------------------------CACTATCCAGAAGGA------------------------------------------------------------G-----TAAAA----------------------------------TGCTAAAGT-ATCA------- i gasAcu1.chrII I 6 I 6 s oryLat2.scaffold949 53529 62 - 66997 ---CTCATCTGGCACTAATTTATGCGACAA---AA-----AAT------------------------Ctttagttaacaaaa------------------------------------------------------------------taaac----------------------------------t----caGTCATCA------- i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1118837 70 - 2256342 --------------------------AAAA---AA-----GAC------------------------AGGAACCCAACAGACAAAGGACCTCAAAGTccaaaaacacatacactg---a-----------------------A-----TAATT----------------------------------T----CATT-T---------- i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8295202 70 - 42261000 -----------------------CCGATAA---AA-----GATACACGGCCTAGTCGTACCTTTAAAAGCAAGTCTGCAGCT---------------------------ACGTTAAATA-----------------------A-----TTATT----------------------------------T----TA-------------- i danRer7.chr22 C 0 C 0 e fr3.HE594383 528 58 - 7085 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32498 320 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=103184.000000 s mm10.chr1_GL456221_random 151829 97 + 206961 AACAAATGGACCTGACAGATATCTACAGAACATT-TTATCCTAAAACAAAAGGA-----TATACC-TTCTTCTCAGCACCTCACGGGACCTTCTCCAAAA-TTG-----A s monDom5.chr1 156860793 97 + 748055161 AAAAATTAGAATTAATAGACATATGGAGCAAAAT-AAATAGGGATAAAAAGGAA-----TACACC-TTCTTCTCAGCACCACGTGGCACATTCACAAAAA-TTG-----A i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257751 97 - 270121 aaaatttaggtatgatagatcttgggagaaaact-aaatggatacagaaaagag-----tacact-tgcttcttggcagttcatggaacctagacaaaaa-atg-----a i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 791 100 + 2363 ATAAGGTAGATATGATAGATCTTTGGAGAAAATTAAAATGGGAATAGAAAGGAA-----TATACCTTTTTTCTCAGAGGTACATGGAACATTTACAAAAATTTG-----A i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084164 97 + 175225315 ATGAATTAGATTTAACAGTCATATACAGGACATT-ACATCCCAAATCACCAGGA-----TACACA-TACTTTTCTAGTGCTCATGGAACTTTCTCCAGAA-TAG-----A i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329670 97 - 2387735 AAGATCTAAACCTGGTGGATgcctggagagagaa-aaatgaaaagacGAGGGAC-----TATACT-TTCTATTCGACCAGGCACAAAACCTGGTCTAGAA-TTG-----A i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11615401 80 + 14749333 AAGAAGAGGACATGGTATATATCAGGTGTTTTCT-ACACCAGAATGTGAGGGAC-----TTCAGT-T----------------------TTTCtccaaaa-ttgtcaaaa i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1192367 97 + 3338395 AACATCATGCCCTATACGATGCATGGAGAGAGTG-TAACCCCAAAGAAAAAGAC-----TACACA-TACTTCTCCTATCCACACGCAAGGTACTCAAGAA-TAG-----A i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 359571 97 + 495207 CAGAACTGGGATTACAGGATATATGGAGGTTCTT-AAATCCTACAGGCAGAGAT-----TACACC-TTTTATTCTAACCCACATGACTCATATTCTAGAA-TAG-----A i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27810510 97 - 107808587 AACAAATGGACCTGACAGATATCTACAGAACATT-TTATCCTAAAACAAAAGGA-----TATACC-TTCTTCTCAGCACCTCACGGGACCTTCTCCAAAA-TTG-----A i tetNig2.chrUn_random C 0 I 4 s fr3.HE594383 586 97 - 7085 ACCAATTAGGCCTATCTGATCCATGGAGAACTAT-GTACCCTCACACGAaagct-----ttctct-ttcttctcgcATGTCCACAGGTCTTACTCTCGga-ttg-----a i fr3.HE594383 I 58 I 10 s oreNil2.GL831313-1 183808 100 + 1571857 ACTAGATGTGTCTGGAGCATCTAT-TAGCTCAA--ATGCTCTTACAAAAAAGCAGGGACTATACC-CACTACTCCTGTCCCCATAGGACTTATTCTAGAA-TAG-----A i oreNil2.GL831313-1 I 6 I 13 s gasAcu1.chrII 143084 96 + 23295652 AGTAA-CAGGCCTTGTAGATATATGGAGAAGCAA-ATTTCCAAGAACCAGAGAT-----TTCACC-TTCTATTCATGCAGACATGCGTCCTATTCAAGGA-TTG-----A i gasAcu1.chrII I 6 I 10 s oryLat2.scaffold949 53591 97 - 66997 AAGAAATTGGTATAATAGATGTTTGGAGGGAACT-GAATTCAACTAGCCGGGAC-----TACACT-TATTACTCAGCACCACAATCAACCTACTCCAGAA-TAG-----A i oryLat2.scaffold949 C 0 I 13 s gadMor1.HE567998 1118907 97 - 2256342 CTGAACTGGGACTTGTAGACCCATGGAGAACTAA-AAATCCTACAGGGAAAGAT-----TTCACC-tttttttCTAATGTACACAACAGTTATTCAAGGA-TTG-----A i gadMor1.HE567998 C 0 I 13 s danRer7.chr22 8295272 97 - 42261000 GGAATATTaatatggttgatatctggaggcattt-aaatccatattctcgagaa-----tattca-ttttattcttcagtgcataaatcctactctagaa-tag-----a i danRer7.chr22 C 0 I 8 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32498 320 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-115391.000000 s mm10.chr1_GL456221_random 151926 24 + 206961 CCATATAATTGGTCACAAAA--------CAGG----------------- s monDom5.chr1 156860890 21 + 748055161 CCATACATTAGGTCACAG-----------AAA----------------- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257848 21 - 270121 ccatatattaggacataa-----------aga----------------- i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 891 21 + 2363 CCATGTACTAGGACATAA-----------AAA----------------- i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084261 24 + 175225315 TCATATGCTGGGACATAAAA--------CAAA----------------- i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329767 19 - 2387735 T-ATG-GTTTGGACTTCA-----------AAA----------------- i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11615481 16 + 14749333 t-ataTACTAGGAT---------------AGA----------------- i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1192464 32 + 3338395 CTACATACTGGTCGACAAAACTACACTCCAAC----------------- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 359668 20 + 495207 T-GTATGTTATATCTCGG-----------AGC----------------- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27810611 20 - 107808587 -----------------------------ATAATTGGTCACAAAACAGG i tetNig2.chrUn_random I 4 C 0 s fr3.HE594383 693 24 - 7085 -------------------------ctcGATAATAGATTATTAGATAAC i fr3.HE594383 I 10 C 0 s oreNil2.GL831313-1 183921 13 + 1571857 -------------------------TTCAGTAATGATT----------- i oreNil2.GL831313-1 I 13 C 0 s gasAcu1.chrII 143190 22 + 23295652 -------------------------ACCGGTAAGGCTCCACAGGATA-- i gasAcu1.chrII I 10 C 0 s oryLat2.scaffold949 53701 13 - 66997 -------------------------TTCGGAAAAGATC----------- i oryLat2.scaffold949 I 13 C 0 s danRer7.chr22 8295377 7 - 42261000 -------------------------ttgtaga----------------- i danRer7.chr22 I 8 I 5 e gadMor1.HE567998 1119004 13 - 2256342 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32498 320 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-133905.000000 s mm10.chr1_GL456221_random 151950 27 + 206961 CCTC-----AA---CAG----------------------ATACA----------AAAATATTGAAAT s monDom5.chr1 156860911 30 + 748055161 CATA-----GCACACAA----------------------ATGCA----------GAAAAGCAGAAAT i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257869 30 - 270121 cctc-----aaactcaa----------------------ataca----------gaaaggaagaaat i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 912 30 + 2363 TCTC-----ACAATCCA----------------------GTGAA----------GAAAGGTAGAGAT i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084285 27 + 175225315 Cctc-----aa---taa----------------------attta----------aaaagattgAAAT i taeGut1.chrUn C 0 I 1 s anoCar2.chrUn_GL343225 2329786 32 - 2387735 TCTctagtaac---aaa----------------------aataa----------aaaagataaggat i anoCar2.chrUn_GL343225 C 0 I 1 s chrPic1.JH584471 11615497 14 + 14749333 TCT-----------------------------------------------------AATTTTGAGAT i chrPic1.JH584471 C 0 I 25 s xenTro3.GL172702 1192496 19 + 3338395 TCTT-----AA---CCA----------------------AAGCA----------CACAT-------- i xenTro3.GL172702 C 0 I 1 s latCha1.JH128317 359688 37 + 495207 AGTT-----AA---TAA----------------------ATATGGTAGGTGGGTGTAATATTGGAGT i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27810631 27 - 107808587 -----------CCTCAACAG-------------------ATACA----------AAAATATTGAAAT i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 717 32 - 7085 -----------ATACAATCG--------------TGTGAGTACC----------ACAGCATAGTAAT i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 183934 18 + 1571857 ---------------------------------------GTACT----------AGAGTAAAggaat i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 143212 14 + 23295652 ---------------------------------------AT--------------GGATGTGGAGAT i gasAcu1.chrII C 0 C 0 s oryLat2.scaffold949 53714 18 - 66997 ---------------------------------------GACAC----------CGAATCCAGTCAT i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1119017 26 - 2256342 -----------CCTCAACA--------------------ATACA----------TGTACAAAGTAAT i gadMor1.HE567998 I 13 C 0 s danRer7.chr22 8295389 45 - 42261000 -----------acttaataaaaatggcttcatcctcccaatatc----------acaatagattaa- i danRer7.chr22 I 5 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32498 320 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-70958.000000 s mm10.chr1_GL456221_random 151977 25 + 206961 ---------TGTCCCATGTA----TCC-TATCAGACCAC s monDom5.chr1 156860941 25 + 748055161 ---------AAT-CAATGCA----GCCTTCTCAGATCAC i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257899 25 - 270121 ---------agt-aaatgca----tccttttcagatcac i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 942 25 + 2363 ---------AAT-CAATGCA----TCCTTTTCAGATCAT i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084313 24 + 175225315 ---------ATT-CAAAGCA----CAT-TCTCTGACCAC i taeGut1.chrUn I 1 C 0 s anoCar2.chrUn_GL343225 2329819 24 - 2387735 ---------TTA-CCAAGAC----TGG-ATTCGGACCAT i anoCar2.chrUn_GL343225 I 1 C 0 s xenTro3.GL172702 1192516 24 + 3338395 ---------GGA-ACAAGAA----CCT-GGACAGACCAT i xenTro3.GL172702 I 1 C 0 s latCha1.JH128317 359725 19 + 495207 ---------------AATCA----CAA-TATCAGATCAC i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27810658 25 - 107808587 T----GTCCCAT-GTA--------TCC-TATCAGACCAC i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 749 21 - 7085 T-----TCTGAT------------CAC-TCTCCGAtcac i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 183952 31 + 1571857 g-----taaaat-taaaacgATAGATC-TTTCAGATCA- i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 143226 25 + 23295652 T-----CTGCCT-ATAA-------CTA-TATCTGACCAC i gasAcu1.chrII C 0 I 477 s oryLat2.scaffold949 53732 32 - 66997 G-----CGACAT-AGGAACAATAGATA-TATTTGACCAC i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1119043 34 - 2256342 TGATTGTCACAT-TGAACCTATAACTC-TGAGTGAC--- i gadMor1.HE567998 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32498 320 + 35690 I e danRer7.chr22 8295434 0 - 42261000 C e chrPic1.JH584471 11615511 25 + 14749333 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-39620.000000 s mm10.chr1_GL456221_random 152002 25 + 206961 CATGGCCTAAGACTGATCTTCAATA s monDom5.chr1 156860966 25 + 748055161 AAGGCAATAAAAATAATGATTAGTA i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257924 25 - 270121 aatgcaataaaaattacattccata i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 967 25 + 2363 AATGCATTAAAAATTACATGTAATA i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084337 15 + 175225315 AATGGAATCCAAT----------TA i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329843 15 - 2387735 TGTCCGATTGAAC----------TA i anoCar2.chrUn_GL343225 C 0 C 0 s xenTro3.GL172702 1192540 22 + 3338395 GCCCCAGTCACAA---TCTCCACTA i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 359744 15 + 495207 GCCCCAGTAGACC----------TA i latCha1.JH128317 C 0 I 6 s tetNig2.chrUn_random 27810683 25 - 107808587 CATGGCCTAAGACTGATCTTCAATA i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 770 18 - 7085 ttta----aatattaatctc---tC i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 183983 20 + 1571857 --TAGCCCCATTTCATTGTC---TT i oreNil2.GL831313-1 C 0 C 0 s danRer7.chr22 8295434 20 - 42261000 -----tttcagatcatgccccattg i danRer7.chr22 C 0 C 0 e gasAcu1.chrII 143251 477 + 23295652 I e gadMor1.HE567998 1119077 0 - 2256342 C e oryLat2.scaffold949 53764 0 - 66997 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32498 320 + 35690 I e chrPic1.JH584471 11615511 25 + 14749333 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-15885.000000 s mm10.chr1_GL456221_random 152027 1 + 206961 -A s sorAra1.scaffold_221719 32818 1 + 35690 -c i sorAra1.scaffold_221719 I 320 I 1990 s monDom5.chr1 156860991 1 + 748055161 -A i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257949 1 - 270121 -a i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 992 1 + 2363 -A i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084352 1 + 175225315 -G i taeGut1.chrUn C 0 C 0 s anoCar2.chrUn_GL343225 2329858 1 - 2387735 -A i anoCar2.chrUn_GL343225 C 0 C 0 s xenTro3.GL172702 1192562 1 + 3338395 -A i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 359765 1 + 495207 -A i latCha1.JH128317 I 6 C 0 s tetNig2.chrUn_random 27810708 1 - 107808587 A- i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 788 1 - 7085 T- i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 184003 1 + 1571857 T- i oreNil2.GL831313-1 C 0 C 0 s danRer7.chr22 8295454 1 - 42261000 t- i danRer7.chr22 C 0 C 0 e gasAcu1.chrII 143251 477 + 23295652 I e gadMor1.HE567998 1119077 0 - 2256342 C e oryLat2.scaffold949 53764 0 - 66997 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e chrPic1.JH584471 11615511 25 + 14749333 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-193090.000000 s mm10.chr1_GL456221_random 152028 31 + 206961 -----------AAACATAAA------TAATGGAAAGCCAACAT-------------T--CACG-------- s monDom5.chr1 156860992 31 + 748055161 -----------TGGTACATG------GAAAACCAAATCAAAAA-------------C--TAAT-------- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257950 30 - 270121 -----------aaattgagg------ggaaa-tggactaaaaa-------------a--taat-------- i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 993 31 + 2363 -----------AAGGTCATG------GAAAGAGAAACCAAAAA-------------T--CAAT-------- i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084353 37 + 175225315 -----------AAGTAGATAACCATCAGAGACTTAGAAAATTC-------------T--CAAA-------- i taeGut1.chrUn C 0 I 4 s anoCar2.chrUn_GL343225 2329859 31 - 2387735 -----------AAATCTACAAc--tcaaaa----aaaaaacag-------------t--aaga-------- i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11615536 22 + 14749333 --------------------------TGATGTTAGAATAGGAG-------------T--AATA-------- i chrPic1.JH584471 I 25 C 0 s xenTro3.GL172702 1192563 31 + 3338395 ------------------------------ATTCAGCCAAACAAGCCCCTCAACCTC--ACAT-------- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 359766 33 + 495207 -----------AAGTGGAGA------GAGTAGCAGaaaaaaaC-------------TTATAGT-------- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27810709 31 - 107808587 CA----ACATAAATAA---------------------TGGAAA-------------G--CCAACATTCACG i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 789 43 - 7085 CA----AGACAAATTGCCTA------CGAA---GCCCTGGAGA-------------T--TCAACTCCCACC i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 184004 45 + 1571857 GAGTTTAGAGAAAAAAGCAA------GGAAGGTGCTGTGGAAA-------------C--TGAATTC----- i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 53764 48 - 66997 --GCACCAGTAAAATTGCTA------ATAAATATCAATGACAA-------------G--CCCAAATCTACA i oryLat2.scaffold949 C 0 I 3 s gadMor1.HE567998 1119077 47 - 2256342 ---CATGCCCCAATCATACT------GAAGATAGACCTGGGCA-------------T--GCACTCTTTTTT i gadMor1.HE567998 C 0 I 7 s danRer7.chr22 8295455 41 - 42261000 cactagatttaaaact----------aaagttggaaaaaggaa-------------c--gtactgt----- i danRer7.chr22 C 0 C 0 e gasAcu1.chrII 143251 477 + 23295652 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-24618.000000 s mm10.chr1_GL456221_random 152059 19 + 206961 TGGAAACTGAAT--AACACTC s monDom5.chr1 156861023 19 + 748055161 TGGAATTTAAAA--AATATGA i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257980 19 - 270121 tgaaaactaaat--aatctca i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 1024 19 + 2363 TGGAAACTAAAT--AATCTAA i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084394 19 + 175225315 TGGAGGTTAAAC--AACACCC i taeGut1.chrUn I 4 C 0 s anoCar2.chrUn_GL343225 2329890 19 - 2387735 tGGAAATTGGAT--GACAact i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11615558 21 + 14749333 TGCATCTTGGACCTGATGGCT i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1192594 19 + 3338395 TGGAGACTGAAC--GAATCTT i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 359799 19 + 495207 TGGAGGTTGAAT--ACATTCC i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 27810740 14 - 107808587 TGGAAACTG-----AACAA-- i tetNig2.chrUn_random C 0 N 0 s fr3.HE594383 832 14 - 7085 TATTATCCG-----AACCA-- i fr3.HE594383 C 0 I 4 s oreNil2.GL831313-1 184049 5 + 1571857 --------------AACTA-- i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 143728 19 + 23295652 TGGAGACTTACTGCATCTA-- i gasAcu1.chrII I 477 C 0 s oryLat2.scaffold949 53815 14 - 66997 TGGAAATTG-----AACCT-- i oryLat2.scaffold949 I 3 I 5 s gadMor1.HE567998 1119131 19 - 2256342 TGGAGGTCGAATGTATCTC-- i gadMor1.HE567998 I 7 C 0 s danRer7.chr22 8295496 17 - 42261000 tggaaattcgat--aactc-- i danRer7.chr22 C 0 I 2 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-26500.000000 s mm10.chr1_GL456221_random 152078 73 + 206961 TTCT------CAATGATACCTTGGTCAAGGAAGAAATAAAGAAAGAAATTAAAGA-C-TTTTTAGAGT-----TTAATGAAA-------ATGA s monDom5.chr1 156861042 73 + 748055161 TACT------CCAAAATCGTTTAGTTAAAGAAGAAATCATAGAAACAATTAATAA-T-TTCATTGAGG-----AAAATGACA-------ATGG i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 257999 73 - 270121 ttct------aaagaataaatgggtgaaacagaaaatcatagacataattaataa-t-ttcacccaag-----agaatgaaa-------ataa i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 1043 73 + 2363 TTCT------AAAGAAGGGTTGGGTTAAAGAAGAAATCATAGAAACAATCAACAA-T-TTCATTCGAG-----AGAATGACA-------ATAG i ornAna1.Contig81590 C 0 C 0 s taeGut1.chrUn 118084413 73 + 175225315 TCCT------AAACAATCAGTgggttaaagaaaaaataccaaaagaaattgctaa-a-tatatacaga-----caaatgaaa-------ttga i taeGut1.chrUn C 0 N 0 s anoCar2.chrUn_GL343225 2329909 64 - 2387735 tatt------aa--------------aaaaagaagacattGaaaaaaaTAGAAAG-T-TACTAATAGAGTATTTCAGCCAAA-------ATGA i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11615579 74 + 14749333 GTCTTCATTAAAATAAAGTCTAATTCAGGAATAAGA----GAAAGAAGTTGGAGATT-TAATAATATA-----TTGTTAAAA---------GA i chrPic1.JH584471 C 0 I 1 s xenTro3.GL172702 1192613 69 + 3338395 TATT------AAACAACAACAAAGTAATACAAGAATGCAACCAAACATTAAAAGA-C-TATTTC---------TCACTGAAC-------TCGA i xenTro3.GL172702 C 0 I 4 s latCha1.JH128317 359818 71 + 495207 TGTT------ACAGGATAAAAAATGGCAAGGAGCATTAAAGAAGGAACTTCAATA-T-TATTGGGAAA-----TTAATGAGG---------GG i latCha1.JH128317 C 0 I 2 s tetNig2.chrUn_random 63797296 80 - 107808587 TTCT------CAATGATACCTTGGTCAAGGAaggaataaagaaagaaattaaaga-C-TTTTTAGAGT-----TTAATGAAAATGAAGCCACA i tetNig2.chrUn_random N 0 C 0 s fr3.HE594383 850 55 - 7085 ------------------------TCAAAGACTATCTAACTAATCAGATTCAGCT-C-TTCTTCGATA-----CTAATGATA-------CGCC i fr3.HE594383 I 4 C 0 s oreNil2.GL831313-1 184054 73 + 1571857 TATT------AAACGATCCTATACTAAAACAAAAGttaagagaagaaataaaaga-t-tttcTTGAAC-----TAAATGATA-------CGGG i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 143747 73 + 23295652 TCCT------TAATGATAAAGAATTTACCTCCTTTATCACAGCAGAACTCAAGGA-A-TACTTGGATA-----TCAATACCT-------CGGC i gasAcu1.chrII C 0 C 0 s oryLat2.scaffold949 53834 74 - 66997 TAct------aaataatgcaaaaataaaagaagaattgggtaaagagataaaaaa-tgtattttgaag-----atAATGATA-------ATGG i oryLat2.scaffold949 I 5 C 0 s gadMor1.HE567998 1119150 73 - 2256342 TACT------GAACAACGCAGAAACAGTAGAGGATTTGAGACAACAATTAAAAGA-A-TACTTTGAGA-----CAAATGATA-------ATGG i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8295515 73 - 42261000 tttt------aaatgataattttttttgtaattatataactgaaaaaattgggta-t-tttttatctg-----aaaatgaca-------atgg i danRer7.chr22 I 2 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-599778.000000 s mm10.chr1_GL456221_random 152151 245 + 206961 AGCCACAAGGTACCCAAA--CCTA-----------TGGGACACAATGAAAGCATTT-CT-----------AAGAGGGAAACT-------------CATAGCTCT----------------------GAGTGCCTCCCAGATGAAAC-----------GGGAGAAAGCA---CATA--CTA---GCAGCTTGACAAC---ACATCTAAAAGCCCTAGAAA---AA----AAGGAAG----CAAATTCACCCA--AGAGGAGTAG--------ACGGCAG------GAAA--TAATCAAA---CTCAGGGGTGAAATCA------ACCAAGTGGAAACA--------AGAAGAACT----AT-TCAAAGAATCAA-CCAAT s monDom5.chr1 156861115 245 + 748055161 CGAGACATCCTTTCAAAC--CTTT-----------TGGGATGCAGCCAAAGCGGTA-AT-----------CAGAGGTGAATT-------------CATATCCCT----------------------GAGTGCATATATTAACAAAC-----------TAGGGAGAGCA---GAGA--TCA---ATCAATTGGAAAT---GCAAATAAAAAAACTTGAAA---GT----GACCAAA---TTAAAACCCCCCAGTAGAAAATCAA--------A---CTA------GAAA--TCCTAAAA---ATTAAGGGAGAAATTA------ATAAAATAGAAAGT--------GATAGAACT----AT-TGATTTAATAAA-TAAGA i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 258072 247 - 270121 tgagatgacataccaaaa--tgtg-----------tgggatgcagccaaagtggta-at-----------aaagggaaattt-------------tatatctct----------------------agaggcctacttgcacaaaa-----------tagaaaaagag---aaaa--tca---atgaattaggctt---gcaactaaaaaagctagaaa---aa----gaacaaatttttaaaa---------aaacaatcaa--------a---cat------gaaa--ttctaaaa---ataaaaggagggatta------ataaaagtgaaagtaaaaaaaaaaaaaaact----at-tgaattaataaa-taaaa i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 1116 245 + 2363 TGAGACAACATACCAAAA--CTTA-----------TGGGATACTGCAAAAGCAGTT-AT-----------TAGGGGAAGTTT-------------TATATCTTT----------------------GAATGCTTACATAAATAAAA-----------TAGAGAAAGAG---GAGA--TCA---ATGACTTAGGCTT---GCAGTTGAAAAAGCTAGAGA---AA----GAACAAA---TTGAAAATCCCCAAGTAAATACCAA--------A---TTA------GAAA--TACTGAAA---ACCAAAGTAGAGATTA------ATAAAATTGAAATT--------AAGAAAACT----AT-TGAATTAATAAA-TAAAA i ornAna1.Contig81590 C 0 C 0 s anoCar2.chrUn_GL343225 2329973 241 - 2387735 ---CACATCAGAAGTACA--CCTATA--TACAGTTTGGGACGCCAGTAAGGCAGTA-AT-----------GAGGGGGAACTT-------------TATTCAACa----------------------aaaagcattaaagaaaaaaa-----------t-gagaatgca---ggaa--tcc----------gaaaaa---ataatggaaaaaatca-ata---aa----gaggagg-----aaat------actaaagagg-----------a---acc------caaa--gaacgaaa---aCGCACAAAAGAATTTGCAACTACTACACAAGCAAA--------GAGAATACCTAGAGA-TGGAGGAAAGAG-CAAAC i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11615654 267 + 14749333 ---------------AGA--CGTGAA--TAAAA--TGGAATACATATCGATAATTACAT-----------TAAGGATAATCT-------------CCTACAAGATGTATCACCAGGAACTAgggggggAGGCCTTTAACACTGTAA-----------T-AAGGGGGCA---TGTC--TCATAGTTATAGGGAAAAG---ACATAGGCAAAAAC----------A----GAGGAAC-----AAATTTACTCCTTGCAGAAGCaacattattta---att------aata--acATGAAT---TTGCTCCAAGAGATTAAGAAC-ACAAAAAGAGCATT--------AGAAGCACT----GA-TACCAGAAAGAACCCAGA i chrPic1.JH584471 I 1 C 0 s xenTro3.GL172702 1192686 245 + 3338395 GGACATCTCGCAACCCAC--TCTA-----------TGGTGTGCGCACAAAGCAGTT-AT-----------CAGGGGCCAACT-------------TAT---TAA----------------------AACCGCATCCCTGAACAAAA-----------AACAAAGGGAA---CAAA--CCATGCTAGACCTCACTAA---ACAACTTAACGAACTGGAAA---CA----CAAAACA-----AAGCACAACC---TAAGTCCCAG--------A---CAA------CAAAATTAATTAGATCCATAAAGGGAAAAATCC------ATGAACTAGAACTA----ATCAAAATAAACT----TC-CAACTACGAAAA-C---- i xenTro3.GL172702 I 4 C 0 s latCha1.JH128317 359891 229 + 495207 -----------AGTGGAA--TCTACAGCTACAGTGTGGGATGTAGGAAAAGCCTTT-AT-----------CAGAGGAATAAT-------------TATaaaaag----------------------acaggcaacagagagagcaa-----------tagaaagaaac---aata--taa---aaaagctagagac---aaaaaTTAAGGAATTGGAAA---GG----GAATACA--GTGAAAA---------AGAACAACAATTGGTTTTG---AAC------CAAC--TAATAAAA-------------------------GCTAAGTAtgattt--------aaatacaat----tt-ttcaaaaaaaaa-aaaaa i latCha1.JH128317 I 2 C 0 s tetNig2.chrUn_random 63797376 238 - 107808587 ACA--TACCCAAA-------CCTA-----------TGGGACACAATGAAAGCATTT-CT-----------AAGAGGGAAACTCATAGCTCTGAGTACCTCCAAA----------------------AAGAAACTAGAGAGAACACA--------CATTAACAGCTTGA---CAAC-----------ACATCTAAAA---GCTctagaaaaaaaggaagc---aa----attCACC---CAAGAG---------GAGTAGACGA--------C---AG-------GAAA--TAATCAAA---CTCAGGGGTGAAATCA------ACCAAGTGGAAACA--------AGAAGAACT----AT-TCAAAGAATTAA-CCAAA i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 905 227 - 7085 GGA--TATTGGTAGTGGTGTGCTT-----------TGGGAGACTCTTAAAGCTTAT-TTGCGTGGTCAAAAGGAGGGAGGAGCGCACC-------AAATTGAAA----------------------CAAATATCAGATGAAATACA------ACTGTTAGATGCCCAG---TATT--CAG---TTAACCCCTCAGATGTGCTATATAAAAAACGAGTAC---AG----CTCCAGT---C------------------------------------------------A--CAATATAA---CT------TGTTAACC------TCCGGTCGGATTGA--------GAAACAACT----TT-T------ACACA-CTAAA i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 184127 230 + 1571857 GGAAGTGTCACAAATCAT--ATTA-----------TGGGACACCCTAAAGGCAGTA-AT-----------GAgaggaaaaat-------------aatttcaat----------------------gaCCTCCCATCTGAAAAAGA-----------TAAAGCTGCAA---AAAT--TAG---TCAACCTTCAGGC------------AAAGTTAAAAC---AA----CTACAAC---GGGAAG---------ATGGATACAA--------A---GGTAATTctgaga--taaaaaaa---ga-aataaaaaaaaat------acaggtcgAAATCG--------ATGAAATTT----AT-ACGCAGGA--AA-ctcaa i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 143820 230 + 23295652 CGAAACAACATTCCTCAT--ATTG-----------TGGGACTGTGCTAAAGCATAC-CT-----------CAGAGGCCGTAT-------------AATCTCATT----------------------TACCTCTGCCAGGAAAAAAAGGAAAAGAGGCTAAACAGAGAG---AATTGGAAG---ATAAAATAAAAGA---CTTGGAAAATAGGCATAAAC---AATCAGCTTCATC---CAG-------------------------------------------TCTT--CTAACCAA---CT------TAAATGCT------ACCCGTAGAGAACT--------CAACAGCCT----GT-TAACAGAAAAAA-TTGAG i gasAcu1.chrII C 0 C 0 s oryLat2.scaffold949 53908 229 - 66997 GGAAGTCTCCCCAGCTAC--AGTG-----------TGGGATGCGTATAAAGCGGTA-Ct-----------aagaggaaaaat-------------aatttcGCT----------------------CTCCTCATCGTTAAAGAAGC---------GTTAACAAGAAAGGCTTAAT--CAA---TTAACATGTCAAC-----TTAAAGAtttgcaaaaac---aa----cataaaa---ttgGAG---------CGAAACACAA--------T---AAC------Ggaa--caat--ga---tt------aaaaaaat------acaaaatgagaTAG--------ATGAGATAT----AC-TCGGaaga--ag-ttaaa i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1119223 213 - 2256342 AGAAGTTAACCCTTCAAT--TTTA-----------Tgggagggagcaaaagcagtt-aT-----------AAGAGGGAAAAT-------------AATACAGAT----------------------ATCATCACAACAGAAGAGAA--------------------AG---CGAC--TTG---CGGAAAAGTTGAG---CCTAGAAAACAAGATAAAGC---Tc----ctagaaa---cacaac---------acaaaaataa--------t---agA------GCAA--CTAA--TA---CT-----------GCC------ACAGAACTTAAGGA--------GGCAGGCTT----TTATCATATAA--AG-CAGAG i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8295588 245 - 42261000 cagcgttaatgaatctgt--atta-----------tgggattcaatgaaagctgta-at-----------tagaggtgagat-------------aatctc-ct----------------------ttcaaagtagaaagaacaaa------gaagataaaaagagat--taaat--gaa---atagatgatcaga---tcactaaattagaagaaaactataa----aactaac---ttatgt---------tcaaagacat--------t---gaag-----aaaa--tagtagca---ttgagaagtgaatata------attctattctttcc--------aaaacaatt----gt-taaacaaattaa-tcaaa i danRer7.chr22 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e eriEur1.scaffold_349097 4953 1089 + 49238 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-6761.000000 s mm10.chr1_GL456221_random 152396 2 + 206961 CA s eriEur1.scaffold_349097 6042 2 + 49238 cc i eriEur1.scaffold_349097 I 1089 N 0 s monDom5.chr1 156861360 2 + 748055161 CA i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 258319 2 - 270121 ct i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 1361 2 + 2363 CC i ornAna1.Contig81590 C 0 C 0 s anoCar2.chrUn_GL343225 2330214 2 - 2387735 CA i anoCar2.chrUn_GL343225 C 0 I 12 s chrPic1.JH584471 11615921 2 + 14749333 CT i chrPic1.JH584471 C 0 I 12 s xenTro3.GL172702 1192931 2 + 3338395 TA i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 360120 1 + 495207 -a i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63797614 2 - 107808587 CG i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 1132 2 - 7085 CA i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 184357 2 + 1571857 aa i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 144050 2 + 23295652 GG i gasAcu1.chrII C 0 C 0 s oryLat2.scaffold949 54137 2 - 66997 aa i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1119436 2 - 2256342 GG i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8295833 2 - 42261000 tt i danRer7.chr22 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-88950.000000 s mm10.chr1_GL456221_random 152398 21 + 206961 AGGAGC----------------TGGTT----------------------------CTTTGAGAAA---- s monDom5.chr1 156861362 20 + 748055161 AGAAGC----------------TGGTA----------------------------CT-TGAAAAA---- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 258321 21 - 270121 aagagt----------------tggtt----------------------------ccaagcaaaa---- i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 1363 21 + 2363 AATAGT----------------TGGTT----------------------------TTATGAAAAA---- i ornAna1.Contig81590 C 0 C 0 s anoCar2.chrUn_GL343225 2330228 22 - 2387735 aaaaca----------------ggatT---------------------------ACTTCCAAAAC---- i anoCar2.chrUn_GL343225 I 12 C 0 s chrPic1.JH584471 11615935 21 + 14749333 GCCAAG----------------GGGTT----------------------------TGTGAATGGG---- i chrPic1.JH584471 I 12 C 0 s xenTro3.GL172702 1192933 21 + 3338395 -AGACT----------------AAACT---------------------------ACTATACAAAA---- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 360121 49 + 495207 aaaagc----------------agaatacgCTCTATTTAGACTAAAGCAACTTAATTATGAATCA---- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63797616 21 - 107808587 AGGAGT----------------TGGTT----------------------------CTTTG----AGAAA i tetNig2.chrUn_random C 0 N 0 s fr3.HE594383 1134 16 - 7085 G---------------------CGCTT----------------------------TTTCG----AGCAA i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 184359 25 + 1571857 gaaaat----------------tattt----------------------------ttttaaagcagaaa i oreNil2.GL831313-1 C 0 I 12 s gasAcu1.chrII 144052 25 + 23295652 AAGTTT----------------GAGAT----------------------------TCACAAACCAGAGA i gasAcu1.chrII C 0 I 12 s oryLat2.scaffold949 54139 41 - 66997 gaaattggttTTTCTAAAACAGGGATA----------------------------TTACGAAGCAGGAA i oryLat2.scaffold949 C 0 I 38 s gadMor1.HE567998 1119438 25 - 2256342 AGCTCT----------------AGGAT----------------------------TCTCGAGACAGAGA i gadMor1.HE567998 C 0 I 12 s danRer7.chr22 8295835 21 - 42261000 aaacaa----------------cgtca----------------------------atttgaactt---- i danRer7.chr22 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-57816.000000 s mm10.chr1_GL456221_random 152419 48 + 206961 ATCAAC-AAGATAGATAAACCCTT-----AGCTAGACTCAC-TAA--AGG-GCACAGG s monDom5.chr1 156861382 49 + 748055161 ACAAACAAAAATAGACAAAGTACT-----GGTCAATCTAAT-TAA--AAA-AAGGAAG i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 258342 46 - 270121 accaac-aaaataaataaaccctt-----GCTAAATTTgct-gag--aaa-aagga-- i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 1384 48 + 2363 ACTAAT-AAAATTGATAAACCTTT-----GGACAATCTGAT-TTA--AAA-AAAGAAA i ornAna1.Contig81590 C 0 C 0 s anoCar2.chrUn_GL343225 2330250 44 - 2387735 GCAAAC-ATGCCGGGAAGATGGCT-----GGC-GAAGAAAT-TGC------GGaaaaa i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11615956 50 + 14749333 GGAAAC-AGGTCTGGCAGAGTACT-----AGCTGGACTGAT-TTCTAACA-GGAGATG i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1192954 45 + 3338395 GGAAAT-AAGGCCTCCAAACTCTT-----AGCAAA---AAT-TCT--ACA-GCAAAAA i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 360170 48 + 495207 GGGGAA-AAAGCAGGTAGAGTGTT-----GGTCAGACAATT-GAA--ATC-ACAGGAA i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63993610 50 - 107808587 ATCAAC-AAGATAGATAAACCCTTAGCTAGACTCACTAAA----G--GGC-ACAGGGA i tetNig2.chrUn_random N 0 C 0 s fr3.HE594383 1150 46 - 7085 GGTGAT-AAAGCAGGCAAACTCCT-----GGCTTACCAAG---CA--CGA-ACTGAGG i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 184396 48 + 1571857 GGAAGC-AAATCCTCTAAAGTCTT-----AGCCTATAAACT-GCG--TAA-ACAGAGA i oreNil2.GL831313-1 I 12 C 0 s gasAcu1.chrII 144089 48 + 23295652 GGTAAC-AGGGCAAGCAGATTATT-----AGCATTCAGATT-AAG--AAA-ACAGCAA i gasAcu1.chrII I 12 C 0 s oryLat2.scaffold949 54218 48 - 66997 aacaaa-aagacaacaCAATCACT-----AAAATAAGACAC-TCC--AGA-ACAGAGG i oryLat2.scaffold949 I 38 C 0 s gadMor1.HE567998 1119475 49 - 2256342 GGCAAC-AGAGCCAGCCGCCTCCT-----TGCTTTCCAACT-TTG--CAAGGCTCAGG i gadMor1.HE567998 I 12 C 0 s danRer7.chr22 8295856 49 - 42261000 ggtgag-aagcctcaaaaactttt-----agctcgtcaactaaag--caa-gctcaaa i danRer7.chr22 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-235796.000000 s mm10.chr1_GL456221_random 152467 118 + 206961 GACAAAATC----CTAAT-TAACAAAAT-------CAGA---AATGAAAAGGGAGACATAACAACAGATC---CTGAAGAAATCCAAAACACCATCAGATCCTTC--TACAAAAGGCTATACTC----A----A-----------CAAAA------CTGGAAA------ s monDom5.chr1 156861431 118 + 748055161 GAAGAAAAG----CAAAT-TAACAGCAT-------CAAA---GATGAAAAGGGGGACAGCACCTCCGATG---AAGAGGAAATTAAGGCAATCATTAGAAATTAC--TTTGCCCAATTATATGG----C----A-----------ATAAA------TACACCA------ i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 258388 118 - 270121 gaggaaaat----caaat-tgttagtct-------taaa---aatgaaaagggagaactttccactaatg---aagaagaaatttcagcaataattaggagttac--tttacccaactttatga----c----a-----------atgaa------tttgata------ i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 1432 118 + 2363 GAAGAAAAC----CAAAT-TACTAATAT-------TAAA---AATGAAAGGAGTGAACTCACCTCCAATG---AGGAGGAAATTAAAACAATAATTAGAAACTAC--TTTGCCCAACTTTATGC----C----C-----------ACAAA------TTCGATA------ i ornAna1.Contig81590 C 0 C 0 s anoCar2.chrUn_GL343225 2330294 116 - 2387735 aaGAGAAGC----CACCTTTGTGACAAA-------ACTA---AAGGAAGGAGATAAGATATACACCCA------AGAAGAAATAAGGAACAAATTTGCAAAATTC--TACAAAAAGTTATATCA----A----G-----------ATGAA------CAGATAA------ i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11616006 105 + 14749333 CAAAACAGC----CTtatattttaaaga-------caaa---aatggAGTAGGCAAAAT-----------------AAGGGATTATCAAAATACTAGAGGAATAT--TTCTGAGAGAGATATAC----T----A-----------GCAAA------TATGTAA------ i chrPic1.JH584471 C 0 I 821 s xenTro3.GL172702 1192999 132 + 3338395 CAACAATCC----CAAAC-CATAGATCA-------CCTACTGGACAGCACAGGAGCTAAAATAACAAACC---CCAAAGCAATCGCGGACGTCTTTGCCACATAC--TACTCAACCTTATACAA----C----CTGGAGAAAGATCCAAA------CACTTCA------ i xenTro3.GL172702 C 0 I 7 s latCha1.JH128317 360218 121 + 495207 AATAAGAGA----ACAAT-AGTTGGAAT-------TAAA---GATGGGAGTGACCAAGTGAAAACCAAAA---CCTCAGAAATCAACTTGGTGTTTAAAGATTTT--TATGAATATCTATATAC----CTCAGA-----------AGGAA------TTGGTA------- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63993660 116 - 107808587 CAA--AATC----CTAAT-TAACAAAAT-------CAGA---AATGAAAAGGGAGACATAACAACAGATC---CTGAAGAAATCCAAAACACCATCAGATCCTTC--TACAAAAGGCTATACTC----A----A-----------CAAAA------CTGGAAA------ i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 1196 126 - 7085 CCG--CTTCTAGACTTAT-TCCTCGGAT-------CAGG---TCAGCCCCTGACAACATCACGTCCAATC---CTATCgccattaataatgcatttgtggATTAC--TACGCTAAACTGTACTC----T----T-----------CCGAAACCTCTCTATGCG------ i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 184444 118 + 1571857 CTGGaaaac----acaat-tcttaaaat-------aaaa---aacccacaaacaaagataattgaaaatcaattagagaaaattCAAGAGAGCTTTGAGTTGTTC--TATAAAGAACTGTA-------T----A-----------CCCAA------CCACAAA------ i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 144137 110 + 23295652 TCATCTAAC----ACGAT-ACATAGAAT-------AAAA---T---CAAGAGAAACTTTTGTTACAAAAC---CAGATAAAATAGCAGAATCCTTTGCAGAGTTT--TACA--AATCTTTA-------T----A-----------CAAAA------ATACAGA------ i gasAcu1.chrII C 0 I 5 s oryLat2.scaffold949 54266 115 - 66997 AAATACAAT----ATAAA-CCAGAAGAT----ATCCAAA---ATTGTTTTGAAGAATATTA------------CAGAAGATATCCAAAATTGTTTTGAAGAATAT--TACAAAAATGTATACACA-CAG----C-----------CAAAA------CTAGATA------ i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1119524 123 - 2256342 CCAACCGAA----CTGTA-TCTAAGGTTGTTCATCCAAC---AGTGGCAAGAACAGTATTTC-----ATC---CCAAAGAGGTGGCAGATGCATTTGCATAATTT--TACCAAAATCTGTACAAA-GAA----C-----------CCAAA------TCACAAA------ i gadMor1.HE567998 C 0 I 3 s danRer7.chr22 8295905 121 - 42261000 caa-aaaaa----gccat-ttataaaat-------tcaa---actgaaaacggggaaacgataaccgacc---ctaaaaaaataaatgaaagctttgcagaattt--tacaaagaggtctatacatcta----a-----------TGGAA------ACACGGA------ i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 693 103 - 6016 ------------gatgat-agcCTACAT-------TAAC---A-----------GAAGTGGCTGCACATG----AAGAGAAAT---GTAAATATTCGAGACACTCAATTCAGAACACCCTAGAC----C----C-----------CTAGA------CATGGAATCATAC i petMar1.Contig44859 N 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-69724.000000 s mm10.chr1_GL456221_random 152585 39 + 206961 ACCTGTATGAAATGGAC------AAATTTCTGGACA-G-----ATACCAGG s monDom5.chr1 156861549 39 + 748055161 ACTTAGGAGAAATGGAT------GAATATATACAAA-A-----ATACAAAC i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 258506 38 - 270121 acttaaatgaaatggaa------gaatac-ttcaaa-a-----atatagtt i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig81590 1550 39 + 2363 ATCTAAACGAGATGGAT------GAATATTTTAAAA-A-----ATACAAAT i ornAna1.Contig81590 C 0 n 0 s anoCar2.chrUn_GL343225 2330410 39 - 2387735 ACAAAGAAAAGATAACA------GAATATATAGAAC-A-----GTGTAGTA i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01419949 3 39 + 822 ACCAAGACGAGATGGAC------AAGTTTCTGGAAA-C-----ATACTGTC i chrPic1.AHGY01419949 n 821 C 0 s xenTro3.GL172702 1193138 39 + 3338395 CACAACAAGGGATACAA------ACCTTTCTCTCCA-A-----AGCCAAAT i xenTro3.GL172702 I 7 C 0 s latCha1.JH128317 360339 39 + 495207 ATGCAAGAAAATTAGAA------GAATTTTTCTCAA-ACCTGCATA----- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63993776 39 - 107808587 ACCTGGACGAAATGGAC------AAATTTCTGGACA-G-----ATACCAGG i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 1322 37 - 7085 ATTGGGATGACCCAAAC---------CCTCTCGACATG-----CTCGCATA i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 184562 45 + 1571857 CAACggatgaaataaaaattgatAATTTTTTGAACA-A-----ATTAAAAC i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 144252 33 + 23295652 GCTCTGATGATGCAAAA------------CTCAAGA-G-----TTCCTAAA i gasAcu1.chrII I 5 C 0 s oryLat2.scaffold949 54381 39 - 66997 ACATAAATGAAATAGGA------ACTTTTCTTGAAT-C-----CTTAGATT i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1119650 39 - 2256342 CAACAGACAATACTAAT------ACCTTCCTAGCTA-A-----TTTAAACC i gadMor1.HE567998 I 3 C 0 s danRer7.chr22 8296026 38 - 42261000 -CAGAAGTGAAATAAAC------AAGTTTTTAAGTA-A-----TATTAATC i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 796 31 - 6016 --CTGCTGGAAATAgtcctccccatctccctcg------------------ i petMar1.Contig44859 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-60169.000000 s mm10.chr1_GL456221_random 152624 27 + 206961 TACC--AAAGTTGAATCAGGATCAA---GTTG s monDom5.chr1 156861588 27 + 748055161 TGCC--TAGACTAACAGAAGAGGAA---CTAG i monDom5.chr1 C 0 I 1322 s sarHar1.chr2_GL842197_random 258544 27 - 270121 tgcc--cagattaacagagggagaa---gtaa i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 5 27 + 2168 TGCC--CGGATTAACAGAAGAGGAA---GTTG i ornAna1.Contig116551 n 0 C 0 s anoCar2.chrUn_GL343225 2330449 27 - 2387735 taca--aagaat---ttcagaagaacagagag i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01419949 42 27 + 822 CACC--AAGACTGAATCTAGAAGAA---ATTA i chrPic1.AHGY01419949 C 0 C 0 s xenTro3.GL172702 1193177 27 + 3338395 TACC--GCAAATATCCCAAGACCAC---CTCG i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 360378 27 + 495207 TGCC--AACTTTAGAtgaagaggag---agag i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63993815 20 - 107808587 TACC--AAAGTTGAATCAG----------GAT i tetNig2.chrUn_random C 0 I 7 s fr3.HE594383 1359 27 - 7085 CCCT--CAACTTGACCCAACGACTG---CGAC i fr3.HE594383 C 0 I 8 s oreNil2.GL831313-1 184607 26 + 1571857 TACC---AACTTTAATGAATCTCCA---AAAT i oreNil2.GL831313-1 C 0 I 7 s gasAcu1.chrII 144285 29 + 23295652 TCCCATAAAGCTAACTGAACTGACA---GAAT i gasAcu1.chrII C 0 I 18 s oryLat2.scaffold949 54420 26 - 66997 TACC--TAAGGTCACAcag-gaaca---aaat i oryLat2.scaffold949 C 0 I 9 s gadMor1.HE567998 1119689 27 - 2256342 TCCC--TAAACTGTCAGAAGAAGTA---TCAC i gadMor1.HE567998 C 0 I 9 s danRer7.chr22 8296064 27 - 42261000 TTCC--TCAAATAAGTAAAGAAGCT---GCTG i danRer7.chr22 C 0 I 9 s petMar1.Contig44859 827 17 - 6016 ----------tTCACTGAAGTCAGA---AT-- i petMar1.Contig44859 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=54371.000000 s mm10.chr1_GL456221_random 152651 183 + 206961 ACCATCTAAATAGTCCCA------TATCACCTAAAGAAATAGAAGCA---------GTT---ATTAAT-------AGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTTCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCA-GTTCTGCACAAACTATTTCACAAAATAGAAGTAGAAGGTACTCTACCCAACT s monDom5.chr1 156862937 183 + 748055161 AATTCTTAAATAATCCCA------TATCAGAAAATGAAATCCAACAA---------GCC---ATCAAA-------GAACTTCTTAAGAAAAAATCCCCAGGGTCTGATGGATTCACCAGTGAATTCTATCAAACATTCAGAGAACAGTTAATCCCA-ATACTATACAAACTATTTGACATAATAAGCAAAGAGGGAGTTCTACCAAACT i monDom5.chr1 I 1322 C 0 s sarHar1.chr2_GL842197_random 258571 183 - 270121 attgcttaaatactccca------tttcagaaaaagaaatagaataa---------gct---attaat-------caactccctaagaaaaaatccccaggaccagacagatttacatgtgaatgctaccaaacatttaaagaacaattaactcca-atgctatataaaatatttgaaaaaatagggaatgaaggagtcctaccaaatt i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 32 183 + 2168 AATACTTAAACAACCCCA------TCTCAGAAAAAGAAATTGAACAA---------GCC---ATCAAT-------GAACTCCCTAGGAAAAAATCTCCAGGGCCAGATGGATTCACAAGTGAATTCTATCAAACATTTAAAGAACAGTTAATTCCT-ATACTATATAGACTATTTTTGAAAATTGGGGAAGAAGGAGTCCTCCCAAATT i ornAna1.Contig116551 C 0 C 0 s anoCar2.chrUn_GL343225 2330476 182 - 2387735 aagaattaaataaagaga------ttacagaaggagaaataataaaa---------gct---ataaaaagtaTGAAA-------ACGAACAAAGCCCCAGGTCCAGATGGGCTAACGGCGATCTACTACAAAACCTTCCAAAACGAGATAAtcccatatttaaaaaaaattatgaatgaaatAAGACAACAAAAGAAAATGCC--AAGT i anoCar2.chrUn_GL343225 C 0 I 1 s chrPic1.AHGY01419949 69 184 + 822 ANCCCTTGAACAAGCAGA------GCACTAGAAATGAAATCAAA------------------ATAGACAATATAAAACCTCCCTATGAATAACAGCCCAGGACAGGATGGCTTCACTAAGGAATTCTACCAAACATACAAAGAAGGACCCATATCA-GTTTTACTCAAACTCTACCAGAAGATTGAAAAGGAAGGAATACTCCCAAAGT i chrPic1.AHGY01419949 C 0 C 0 s xenTro3.GL172702 1193204 183 + 3338395 ACCTCCTAAATGCTCCCA------TACAACCAATGGAAATACAAACA---------GCA---ATAAAC-------ACAACCTCACCAGGCAAAGCACCAGGCCCGGACGGACTCCCCACCATATATTACAAAACATTCCAAGCAATCCTCCTTCCT-CACTTGACCCAGCTTTTTAACCAAATCTTTCAGCAAGGAAACTTCCCAGAGG i xenTro3.GL172702 C 0 I 1 s latCha1.JH128317 360405 182 + 495207 aaattATAGATGATTATG------TAGAGGAAAAAGAAATAAGAGAA---------GTC---ATAAAA-------CAGTTACCTGTAGGGAAAACACCAGGCCCGGATGGGTTACCAAATGAGGTATACAGGAAATTTGTGGATATTTTAGCACCA-AAACTTGTTAAAGTGTTTAATAATCTT-ATAGACAAGGAGAAGTTCCAGCCT i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63993842 183 - 107808587 ---------ACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAA---------GCAGTTATTAAT-------AGTCTCCCAGCCaaaaaaaGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCA-GTTCTGCACAAACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACT i tetNig2.chrUn_random I 7 C 0 s fr3.HE594383 1394 174 - 7085 ---------GTGCTCCAA------TCACGATCTCTGAGGTCAAAGAT---------GCA---ATAAGT-------TCTCTACAGAGTAATAAGTCACCAGGACCTGATGGTTTCACTACGGAGTTCTACAAAACCTACTCCGAAGCTATTGCCCCA-ACTCTAGTTAGGGTTTTCAATGATGCTCGGGCAAAAGGACTCCTACCTCCCA i fr3.HE594383 I 8 C 0 s oreNil2.GL831313-1 184640 177 + 1571857 ----------TACTCCAA------CCACTAAC-----AACCAAAGAACTTCACCTGGCA---ATATCT-------AAATTAAAAGTAGGCAAGACTCCGGGTTTGGATGGGTACACTGCAGAGTGGTACAAAAACCTTAAAGAGGACTTGCTTCCT-ATTCTATTGAAAACATTCAACTGGATTATGCAAAAGGGTAAATTACCCCCTT i oreNil2.GL831313-1 I 7 C 0 s gasAcu1.chrII 144332 174 + 23295652 ---------ATGAGCCTA------TCGAGGAATGGAAGATCAAACAG---------GTG---ATCTCC-------ACGCTCAAAAATAATAAAAGCCCAGGACCAGATGGATATATCAATGAATTTTATAAAAGCTTCAAGGATATTTTATCACCG-CTTTTGCTAAAGGCATACCACTATGCATTAGAATCTAAAACTATGGCACCGT i gasAcu1.chrII I 18 C 0 s oryLat2.scaffold949 54455 175 - 66997 ---------gTGGCAGAAG-----TAACGGAAAACGAGGTGAAGGCT---------GCA---ATATCC-------AGGCTTAAACCACAGAAGACTCCAGGTCCAGATGGCTTCCCAGCCGAGTGGTACAAATGTTTTAGGGTTCAACTAATTCCT-AAACTTTGCAAAATATGTAACTGGGTATTACAAAAGGGAACAATCCTCTCCT i oryLat2.scaffold949 I 9 C 0 s gadMor1.HE567998 1119725 174 - 2256342 ---------TTACACCAA------TTTCGGAAATGGAAATAAGAGAT---------GCA---ATAAaa-------agattgaaaaataattctTCCCCAGGGGTGGACGGATTTAGTGGAGAATTCTATAAATGCTTTATAAATGATTTGGTGCCG-ATCTTAACCAGGGTGTTTCGATATGCTCTCTCCAAGAATGACCCCCCTGAGA i gadMor1.HE567998 I 9 C 0 s danRer7.chr22 8296100 174 - 42261000 ---------AGAAGGATA------TCACCCTTAATGAGTTAAATGAA---------GTA---GTGAAA-------AATCTCCCGGTTAATAAGTGCTCAGGCCCCGACGGATTTAGTGCAGAATATTATAAAAAATTTTGGGGGATTTTAGGTCCA-ATCTTTCTCCGCGTGATTAATTACTCATTTTCTCAATCGATACTCCCCTCAA i danRer7.chr22 I 9 C 0 s petMar1.Contig44859 844 177 - 6016 ------TAGATAGACCCA------TCACTCTTCAGGATCTCATGGAA---------GCT---CTTAAA-------GAGCTTACACCTGGTAAAGCCCCAGGACCTGATGGTATGACTAAGGAATTATACAAGAATATTGGGACGCACCTCCTGTCG-CACCTACTAAACACTCTGAATGAAGCAGAACTGCAGGGAAAGGTGCCAGACT i petMar1.Contig44859 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=418561.000000 s mm10.chr1_GL456221_random 152834 305 + 206961 CATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGA---CCCAACAAA-GAT----AGAGAACTTCAGACCAATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCAAATCCAAGAACACATTA--AAGCAATCATCCATCCTGAGCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAAT--------G---TAATCCATTATATAAACAAACTCAAAGACAAAAACCAC-----ATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAA s monDom5.chr1 156863120 305 + 748055161 CCTTTTATGACACAAACATGGTACTGATTCCAAAACCAGGCAGGTC---AAAAACAGA-GAA----AGAAAACTATAGACCAATCTCCCTAATGAATATAGATGCAAAAATCTTAAATAGGATACTAGCAAAAAGACTCCAGCAAGTGATCA--GAAGGATCATCCACCATGATCAAGTAGGATTCATACCAGGGATGCAGGGCTGGTTCAATATTAGGAAAACCATCCAC--------A---TAATTGACCACATCAACAAGCAAACCAACAAGAACCAC-----ATGATTATCTCAATAGATGCAGAAAAAGCCTTTGATAAAATACAA i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 258754 303 - 270121 acttttatgacacagatatggtagtGAATt--gaaccaggtaggac---aaaaacaga-aaa----agaaagttatggACCACTTTcactaatgaacattgatgcaaaaatcttaaataaaatatttgcaaaaagattacagaaaatcatcc--ccaggataatacaccatggccaagtaggatttatatcaggaatacagagctggttcaatattaggaaaattattaac--------a---cAATTgcctatatcaataaccaaattaacaaaaaacat-----atgatcatctcaatacatgcaaaaaatgcatttgataaaatccaa i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 215 305 + 2168 CTTTCTATGATACAAATATGGTTTTGATACCCAAACCAGGAAGAGA---CAAAACAGA-GAA----AGAAAATTATAGACCAATTTCCCTAATGAATATAGATGCAAAAATTTTAAATAAGATTTTAGCAAAACGAATATAGCATCTTATCA--TGAGATTAATACATTATGATCAGGTAGGATTCATACCAGGATTATAGGGCTGGTTCAGTATTAGGAAAACTATTAGC--------A---TTATCGATCACATCAACAACAAAGCTAACAAAAACCAC-----ATGATTATCTCAATAGATGCAGAAAAAGCTTTTGACAAAATACAA i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 0 305 + 1364 CATTTTATGAGGCCAGCATCATTCTGATACCAAAGCCTGGCAGAGA---CACAACCAA-AAA----AGAGAATTTTAGACCAATATCCTTGATGAACATTGATGCAAAAATCCTCAATAAAATACTGGCAAACCAAATCCAGCAGCACATCA--AAAAGCTTATCCACCATGATCAAGTGGGCTTCATCCCTGGGATGCAAGGCTGGTTCAATATACGCAAATCAATAAAT--------G---TAATCCAAGATATAAACAGAGCCAAAGACAAAAACCAC-----ATGATTATCTCAATAGATGCAGAAAAAGCCTTTGACAAAATTCAA i galGal4.chrUn_AADN03016568 N 0 C 0 s anoCar2.chrUn_GL343225 2330659 305 - 2387735 CATGGAAAGAAGCAAACATATGCCTAATACACAA-------AGAGAATTCGGACCCAG-AAAATGTAAAAAACTACAGGCCGATATAATTATTAAAtgtggactataaaatatttagtaGCGTGATTGCGGAAAGGTTCAAAAGATTCCTAA--ATGACTGGATAAAGGAAGACCAAACAGGTTTTCTACCGGACAGACACCAGAAAGAAAATGTAAGAACAGTAATAGACCTGATAGAG---TATTACGAAATAAAAAATCAGAAAGAGGTA-------------ATGCTTCTCGCGCTAGATGCGGAGAAAGCATTCGATAATGTCAAT i anoCar2.chrUn_GL343225 I 1 C 0 s chrPic1.AHGY01419949 253 304 + 822 CATTCTATGAAGCCACAATCACCCTGATACCACAACCAGGCAAAGA---CACTACCAA-ACA----AGAGAATTATAGGCCAATATCACTGATGAACACAGACACCAAAATCCTCACCAAAATAGTAGCAAATAGAATCcaaaaacaca-ga--aaaagatTATACATCATGACCAAGTGGGGATCATGCCAGGGACACAGGTGTGGTTCAACATATGCAAATCAATCAAT--------G---TAATACAGCACATCaacaagagaaaggacaaaaACCAC-----ATGATCATCTCAATAGATGCAGGAAAAGCATTTGATAAAATTCAA i chrPic1.AHGY01419949 C 0 C 0 s xenTro3.GL172702 1193388 301 + 3338395 AATGCTA-AAAGCCACCATAACTACCATACCTAAACCAGGAAAATC---TCCCACACA-ATG----CCCAAACTTCCGCCCTATCTCCCTACTTAACTGTGACCTAAAGATCTACGCAAAAATATTAGCAAACAGAATAAAAGAAATATTAC--CTACAATAATCCACCAAGACCAATCAGGCTTTACAAAAGGCAGACAAGGACTAGACAACACTAGAAAAATGCTAGCA--------C---TAATAG--------AAAAAGCCAACCACCAAAAAATGCCTGTAATACTGCTTGCCCTTGATGCGGAAAAAGCTTTCGACAGAGTCCAC i xenTro3.GL172702 I 1 C 0 s latCha1.JH128317 360587 302 + 495207 CGATGAGTGAGGCAACAATTACATTAATACCCAAACCAGACAGAGA---TGCATTAGA-ATG----TGGAAACTATAAACCAGTTTCTCTCCTAAATTCGGATTGGAAGATAATGACTAAggtgctggcaaatagaataaACAGGGTAATCC--TGAAATTAATACATAAGGATCAGGTGGGATTTGTAGTAGGCAGACAAGGTTGtgacaatttaagaaaaatactgcAC--------T---TAATTTGGCATGTTAGAGAAGAAA--ACCAATCTATAA-----GTG-TCATATCTTTGGAcgctgaaaaagcttttgatagggtagAA i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63994025 305 - 107808587 CATTTTATGAAGCCACTATTACTCTGATACCTAAACCACAGAAAGA---TCCAACAAAGATA----GAGAACTT-CAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTAATAAAATTCTCGCTAACCGAATCCAAGAACACATTA--AAGCAATCATCCATCCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAAT--------G---TAATCCATTATATAAACAAACTCAAAGACAAAAACCAC-----ATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAA i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 1568 294 - 7085 CAATGTCAGAGGCTTCAATCACACTCCTATTGGAAAAGGACAAAGA---TCC-ACTTCTATG----TAGCAGTTATAGACCAATTTCCCttttaaatgtagattttaagATACTGGCGAAAGTCTTAGCCAGCCGTCTCCAGAGAGTAATTT--CGGCCCTAATCAATCCTGACCAGACTGGCTTTATTTTAGGGAGGCATTCATCCTCAAACACACGCAGATTACTTAAT--------TCTCTACTCCCCT------ACTGACTC----TCCTGAAC---------TAGTTTTGTCCTTAGACGCTGAAAAAGCGTTCGACCGCGTAGAG i fr3.HE594383 C 0 I 30 s oreNil2.GL831313-1 184817 302 + 1571857 CATGGAAGGAAGCAGTTATCTCCATCATTCCCAAAGAGGGTAAAGA---TAGGACAGA-ATG----TAGCAGTTATCGACCGATTAGTGTATTAAATTTGGGCTATAAACTATTCACAGCAATTCTGGC--ACGGAAATTAGAAAAAATTTTACCTGACATAATAGACCTGGATCAGTGTGGTTTCATCCAACAAAGGCAAACAGTGGACAATATAAGGCGTTCCCTACAT--------G---TTATGGAACAAATAAACAGAGATGGGGTCCAGACA--------GTGTTGGTGGGACTGGACGCTGAGAAAGCCTTTGATTCAGTCAGA i oreNil2.GL831313-1 C 0 I 1 s gasAcu1.chrII 144506 302 + 23295652 CTTGGACCGAGGCAACTATAGTGGTAATCCATAAAGAAGGCAAAGA---TCCCACCGA-GTG----CCAATCCTATAGACCGATCTCACTGCTCAACGGGGACCTGCGCATTCTAACAGCAATCCTAGCAAGGAGAGGTAATCGGATAATAA--CTGGAATTATCCACTCTGATCAGACAGGATTCATCACTGGAAGATACTATGGTGATAACTTACGACGCTTATTAAAC--------A---CAATATCCCACCAAAACAAAGGGAAAACGGAAGTG--------ATGATTTTGTCCCTTGATGCTCAAAAGGCATTTGACCGGGTATCA i gasAcu1.chrII C 0 I 6 s oryLat2.scaffold949 54630 302 - 66997 CATGGAGGGACGCTATAATTTCAGTGATaccaaaagaaggaaaata---taAATTAGA-TTG----CAAACAATACAGGCCAATATCAGTGTTAAACGTAGactataaaatatttatgtCAATATTGGCCAGAAGAATTGAGAAGATCTTAC--CTTCACTTATTCACCTTGACCAGACAGGATTTATTCATCAAAGACAGACCCATGATAGTTTGAGAAGGACACTACAT--------A---TTATTTGGAATATAcaacaaaataagacacaagCA--------ATGCTTATGGGGTTGGATGCAGAGAAGGCATTCGATACAGTTAGA i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1119899 301 - 2256342 CATGGTCACGGGCCATTATATCTGT-ATTTATAAAGAAGGTAAAAA---CCCAACACT-CTG----CGAAGGATATAGACCTATTAGCCTGATATGTAATGACCAGAAATTATTGACAAGTATTTTAGCAAGAAGAGTCCAACAACATATTA--CCACACTGATTAACCCGGATCAAACAGGATTCATTCCCAGCAGACAGGGTGCTAATAATATAAGAAGAACCCTAAAT--------G---TTATTACCTGTGCTAAGAAAAATAAGCAGACATCA--------ATGCTCATAAGTTTTGACGCACAGAAAGCATTTGATACGGTGAAC i gadMor1.HE567998 C 0 I 3 s danRer7.chr22 8296274 296 - 42261000 CGCTTTACAACGCTACTATATCACTAATACAAAAACCCGGACGAGA---CAAAATGAA-AGT----GACATCATATCGCCCAATCTCAATTATCCCAATCGAGACaaaaatccttagtaaagtcttagccaatagattacaacaatatatat--gttcggtcataaaccacgaccaaactggatttatgccaaataggcacatacattcaaatttaagacgtctttttaat--------a---taatttata------cgaaacatacaactaaagca--------tgtgtaatttcattagatgctcaacgtgcatttgatcaaattgaa i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 1021 289 - 6016 CCATGAGGGAAGCCAGAAT--TAGTGATTCACAAGCCAGGAGGATG---T----------------AGCCAGCTATAGACAAATCTCACTATTCAATGCAGATTATAAAATATATGCAAAGGTGCTTGTAAAAAGACTGAAAAAGGCCCTTC--CGAGCATCATTGGGGAAGCCCAGATTGGCTTTATCAGGAGGAAAGACTCCGCAGATAACATCAGTACCCTCGTCAAC--------G---CTGTTGATATCGCCACAAAATACAGAAAACGAGAT--------TGCTCCATTGCCCTGGATGGCGAAAAAGCATTCGGCAGCGTAGAA i petMar1.Contig44859 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-38766.000000 s mm10.chr1_GL456221_random 153139 87 + 206961 CACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACC----TAAACATG--ATAAAAGCAATATACAGCAAACCAGGA------ s monDom5.chr1 156863425 68 + 748055161 CACTCATT-------------------AGCATAGGAATAGAAGGGCCATTCC----TAAAAATA--ATAAACAGTATATATCTAAAACCATCA------ i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259057 87 - 270121 cactcattcctagtaaaaacacttgagaataaaggaataaatgaacttttcc----ttaaaata--atcagtagaatctatttaaaatcaaca------ i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 520 87 + 2168 CACCCATTCCTACTAAAAACACTGGAGAACGTAGGAATAAAGGGAACTTTCT----ATAAAATA--ATAAGCAGTATCTATCTAAAACCTTCG------ i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 305 87 + 1364 CAACCCTTCATGCTAAAAACTCTCAATAAATTAGGTATGGATGGGAcgtatt----tcaaaata--ataagaGCTATCTATGACAAACCCACA------ i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2330964 87 - 2387735 TGGAACTTTAT----CAAGATGCTAATAAA--AGAAATGGACATAGGGTACTATTGCCAAAACATTATAGAAGCAATTTATGAGAAGCAAGAA------ i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01419949 557 85 + 822 CACACACTTATGATAAAAACT--CACCAAAGTGGGTATAGAGGGAACATATC----TCAACATA--ATAAAAGCTATATATGACAAACCTACA------ i chrPic1.AHGY01419949 C 0 C 0 s xenTro3.GL172702 1193689 87 + 3338395 TGGCAATACATGACAAATACCCTCAAAGCTTTCGGACTCCAAGGAAATATAC----TACATGCA--ATATCAACACTGTACTCCAAACCCACA------ i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 360889 87 + 495207 TGGGAATTTTTGCAATATACTCTGAAAAAATTTGGATTTGGGGAgagattta----gaaaaata--attcaaataatGTACAGCAAGACAACA------ i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63994330 87 - 107808587 CACCCATTCATGATAAAAGTTTTGGAAAGATCAGGAATTCAAGGCCCATACC----TAAACATG--ATAAAAGCAATCTACAGCAAACCAGTA------ i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 185120 86 + 1571857 GGCTTTTTCTTTAT-AGGGTACTGAAGACTTTTGGTTTCCACAATAAATTCA----TCTTAATA--ATACAATCCCTTTACGATAAACCAAGG------ i oreNil2.GL831313-1 I 1 C 0 s gasAcu1.chrII 144814 81 + 23295652 TATTTATTC------CAAACACTAAAACGGTTCAAATTTGGTCCCAACTTTC----TAGATTGG--ATACAAACACTATATTCATCACCACAG------ i gasAcu1.chrII I 6 C 0 s oryLat2.scaffold949 54932 87 - 66997 TGGACCTTCCTGTTTAAAGTTTTAGAGAAATATGGCTTACATAAAACTCTTA----TTCAGGCT--CTTCAAGCTGTATATAATAACCCCACA------ i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1120203 84 - 2256342 ---GACTTCTTGTACAGAACACTATCGGCAATGGGGTTTCACTCGGAGTTCA----TAAATTGG--GTCAGAGTCATATACAAAAACCCAAAG------ i gadMor1.HE567998 I 3 C 0 s danRer7.chr22 8296570 87 - 42261000 tggtcttatatgtttgcaactttatctagatttggattcggagacaaatttg----ttcagtgg--gttaaaatgttatatgctaatccaaaa------ i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 1310 93 - 6016 TGGAAGTTCCTGTTCAGCACCATGGAAGATATTGGGATACCGGCCCTTTTCC----TCAAGTGG--TGCCAGCTATTGTACTCGGACCCCTGGGCAGTG i petMar1.Contig44859 C 0 C 0 e fr3.HE594383 1862 30 - 7085 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=19333.000000 s mm10.chr1_GL456221_random 153226 20 + 206961 ---GCCAACATCAAAGTAAATGG s monDom5.chr1 156863493 20 + 748055161 ---GCTAATATCATCTGCAATGG i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259144 20 - 270121 ---gtaagcatcatatgtaatga i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 607 20 + 2168 ---GCAAGCATTATATGCAATGG i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 392 20 + 1364 ---GCCAATATCATACTGAATGG i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331051 20 - 2387735 ---ACTAAGATAATTATAAATGG i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01419949 642 20 + 822 ---GCCAGCATAGTACTCAATGG i chrPic1.AHGY01419949 C 0 C 0 s xenTro3.GL172702 1193776 20 + 3338395 ---GCGCAAGTCACTAACATGGG i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 360976 20 + 495207 ---GCAGCAGTTTTGTCTAATGG i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63994417 20 - 107808587 ---GCCAACATCAAAGTAAATGG i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 1892 20 - 7085 ---GCCTCTGTCAGCACTAATGG i fr3.HE594383 I 30 C 0 s oreNil2.GL831313-1 185206 20 + 1571857 ---GCTCGCGTGAAAGTCAATGG i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 144895 20 + 23295652 ---GCGGCTGTTAAAGTTAATGG i gasAcu1.chrII C 0 C 0 s oryLat2.scaffold949 55019 20 - 66997 ---GCAAGAATTAAAATTAATGG i oryLat2.scaffold949 C 0 I 460 s gadMor1.HE567998 1120287 20 - 2256342 ---TCGCGTGTCAGAGTTAATGG i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8296657 16 - 42261000 -------gcttcaatcctcacaa i danRer7.chr22 C 0 I 5 s petMar1.Contig44859 1403 22 - 6016 GTCTCCACCAACAGAATCATTA- i petMar1.Contig44859 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-29682.000000 s mm10.chr1_GL456221_random 153246 8 + 206961 --AGAGAAGC s monDom5.chr1 156863513 8 + 748055161 --GGATAAAC i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259164 8 - 270121 --tgAAACAC i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 627 8 + 2168 --GGATAAGC i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 412 8 + 1364 --GCAAAAAC i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331071 8 - 2387735 --CCAAGAGA i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01419949 662 8 + 822 --TGAAAAAC i chrPic1.AHGY01419949 C 0 C 0 s xenTro3.GL172702 1193796 8 + 3338395 --ATTCCTCT i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 360996 8 + 495207 --TGTCAAAT i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63994437 8 - 107808587 --AGAGAAGC i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 1912 8 - 7085 --GGTTAGAT i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 185226 8 + 1571857 --AGATTTAT i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 144915 8 + 23295652 --ATATAGAT i gasAcu1.chrII C 0 C 0 s gadMor1.HE567998 1120307 8 - 2256342 --ATGCTGTT i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8296678 7 - 42261000 --acactat- i danRer7.chr22 I 5 C 0 s petMar1.Contig44859 1425 8 - 6016 CAAGAAGG-- i petMar1.Contig44859 C 0 C 0 e oryLat2.scaffold949 55039 460 - 66997 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=152835.000000 s mm10.chr1_GL456221_random 153254 61 + 206961 TGGAAGCAATCCCACTAAAATCAGGGAGTAGACAAGG---CTGCCCACTTTCTCCCTACCTTTT s monDom5.chr1 156863521 61 + 748055161 TAGATGCATTCCCAATAAGATCAGGAGTGAAACAAGG---ATGCCCATTATCACCTGTATTATT i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259172 61 - 270121 TGGTACTATTCCCAACAAAATCAGGAGGGAGACAAGG---TTGCCCAcgatcaccattactatt i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 635 61 + 2168 TAGATGCATTCCCAATAAGATCACGGGTGAAACAAGT---TTGTCTATTATCCCCACTATTATT i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 420 61 + 1364 TGGAAGCATTCCCTTTGAAAACTGGCACAAGACAGGG---ATGCCCTCTCTCACCACTCCTATT i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331079 61 - 2387735 CGaatagaataaaaatagaaaaaggcaCCAGGCAGGG---ATGCCCACTATCCCCTCTAATATT i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01419949 670 61 + 822 TCAAAAGCTTCCCATTAAAATCTGGGACAAGACAAGG---ATGCCCACTATCACCACTCCTATT i chrPic1.AHGY01419949 C 0 C 0 s xenTro3.GL172702 1193804 61 + 3338395 CCAACCCATTCCAGATAACCAACGGGACAAGACAAGG---CTGCCCACTCTCCCCACTAATTTA i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361004 61 + 495207 CTAAGCCCTTTAAACTAGGCAGAGGAACCAGACAAGG---GTGTCCACTGTCACCTCTGCTGTT i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63994445 61 - 107808587 TGGAAGTAATCCCACTAAAATCAGGGACTAGACAAGG---CTGCCCACTTTCTCCCTACCTTTT i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 1920 61 - 7085 CACGCCAATTCTCCCTGCACAGGGGCACTCGACAGGG---TTGCCCCCTTTCCCCGCTTTTGTT i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 185234 61 + 1571857 CTGAATCACTTATTCTAGAAAGAGGGACCAGGCAGGG---TTGTCCAGTCTCACCACTTTTATT i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrII 144923 61 + 23295652 CACAAAGCTTCCCATTAGAACACGGCTGCAGACAAGG---TTGTCCTTTATCCCCCCTGCTGTT i gasAcu1.chrII C 0 N 0 s oryLat2.scaffold949 55499 61 - 66997 TGAAACCCTTCACACTGGAGCGTTCCtgcagacaggg---ctgcccatGCTCACCACTtctatt i oryLat2.scaffold949 I 460 C 0 s gadMor1.HE567998 1120315 61 - 2256342 CTGAGTTCTTTGAATTGCAgaggggggtgagacagggggaCTGCCTCAGTCCCTTACTCTT--- i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8296685 61 - 42261000 caccttcatttccattgtatagaggaacacgccaagg---ctgtcccctatccccttatctttt i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 1433 53 - 6016 --------TTGGCGCTCGCGCGTGAAACTCGGCGGGT---CTGCCCCTTGTCCCCCCTCCTGTT i petMar1.Contig44859 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=96484.000000 s mm10.chr1_GL456221_random 153315 91 + 206961 CAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAAGGGATACAA---ATTGGAAAAGAGGAAGT-CAAAATATCA s monDom5.chr1 156863582 91 + 748055161 TGACATTGTACTAGAAACACTAGCAGTAGCAATTAGAGAAGAAAAAGAAATTGAAGGCATCAAA---ATAGGCAAGGAGGAGAC-CAAGTTATCA i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259233 92 - 270121 caatattgtattagaaatgctagctttgacaataacagatgaaacagagattaaaggaattgga---gcaggtaatgagaaaataaaaattatca i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 696 91 + 2168 CAGTATGGTACTAGAAATGTTATCTGTAGCAATTAGACAAGATAAAGATATTAAAGGAATAAGA---ATAGCCAAAGAAGAAAC-TAAGTTATCA i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 481 91 + 1364 CAACATAGTGTTGGAAGTTCTGGCCAGGGCAATTaggcaggagaaggaaataaagggtATTCAg---ttaggaaaagagaaagt-caAATTGTCc i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331140 91 - 2387735 CATACTAACATTAGAAATATTACTGAACaaaataagagaagaaaaagaattaaaaggagCAACA---ATacaaggaaaggaata-taaagTGAGG i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.AHGY01419949 731 91 + 822 CAACATAGTCCTGGAAGTCCTAGCCACAGCAATCAggcaagagagagaaataaaagggATCCAA---ATTGGAAAAGAAGAGGT-AAAAGTGTCA i chrPic1.AHGY01419949 C 0 n 0 s xenTro3.GL172702 1193865 91 + 3338395 CAACATAGTCCTTGAACCCCTAGCCAAAACGATCAGAGACTCAACAGAAATAACAGGAATTAAA---GCAGGAACAACTGAACA-CAAACTAGCA i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361065 91 + 495207 TGTGTTGTTCCTTGAACCTCTGGCAATGTCGATAAGAAGTGATGAGAATATAAGAGGGGTAGTT---ATGGATGGCTACCATCA-TAAATTACTG i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63994506 91 - 107808587 CAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAA---ATTGGAAAAGAGGAAGT-CAAAATATCA i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 1981 89 - 7085 CGCCCTGGCAGTCGAACCTCTGGCCATATGGTTGCGTAGCGAGAACGGGTTTGAGGG--TATAA---CTCGTCATGGACAGCTT-CACAAAATCT i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 185295 91 + 1571857 TGCACTTTATATTGAGCCTCTTGGTCAGTTTATAAGAAACAATACCAAAATTAAAGGTATTGTA---GTTGCTGGTGAAGAACA-AAAAGTTGCa i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrIII 6435446 91 + 16798506 CACAATATTTTTGGAACCTCTGGCTATCGCAATCAGGGCAGAAACTGACATTAGAGGGGTCTCA---CAAGGAGAAGTGGAACA-CAAAATGTTT i gasAcu1.chrIII N 0 C 0 s oryLat2.scaffold949 55560 91 - 66997 tgctttatttattgaacCCCTCAGTCAATTAATTCGACAAGCCAAAGAGATAACAGGAGTGAAA---ATAGGAGGACAAGAACA-CAAATTATCa i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1120376 94 - 2256342 TGCTATGAATATTGAACCCTTAGCAGCAGCTATAAGACAGAATAAGGTAATAAAAGGTATAAAGGACATGGGAAATAGAGAATA-CAAGATATCT i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8296746 91 - 42261000 tgccttagctatagaaccattggctgcaagtattagacagaatagtcaaatctctcctatttta---attaataatagacccca-atatatatca i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 1486 91 - 6016 CGTGATGTCCATAGAGCCCCTTGATGAGAAGATTAGAAGAAGCATAGAGAGCAAAGGTCTGCAC--TATGGGGATCGAGAGAAT-AGATACATC- i petMar1.Contig44859 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=66307.000000 s mm10.chr1_GL456221_random 153406 47 + 206961 CTTTT--TGCAGATGATATGAT-AGTATATATAAGTGACCCTAAAAATTC s monDom5.chr1 156863673 47 + 748055161 CTCTT--TGCAGATGACATGAT-GGTCTACTTAAAGAATCCTAGAGATTC i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259325 47 - 270121 ctctt--tagagatgatatgat-ggtatatttagagaaccccaaagatcc i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 787 47 + 2168 CTCTT--TGCAGATGATACGAT-GATTTACTTAGAGAATCCCAGAGATTG i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 572 47 + 1364 ctgtt--tgcagatgacatgaT-TGTATATCTAGAAAACCCCACTGTCTC i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331231 39 - 2387735 GCATT--CGCGGATGACTTAATCTGTATAATAGAAGAACCC--------- i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11616932 39 + 14749333 TTACA--TGCTGATGACTTTATGCATTTTATATAAGATATA--------- i chrPic1.JH584471 I 821 C 0 s xenTro3.GL172702 1193956 47 + 3338395 TTATT--TGCTGACGACATTAT-TCTAACCCTATCAAACCCAAAACAATC i xenTro3.GL172702 C 0 I 1 s latCha1.JH128317 361156 47 + 495207 ATTTA--TGTGGATGACATTTT-GATGTTAGTCTCAAATCCAGAAAGCAC i latCha1.JH128317 C 0 I 2 s tetNig2.chrUn_random 63994597 47 - 107808587 CTTTT--TGCAGATGATATGAT-AGTATATATAAGTGACCCTAAAAATTC i tetNig2.chrUn_random C 0 I 2 s fr3.HE594383 2070 43 - 7085 CTTTTTATGCTGATGATCTTTT-ACTGTACATGTCCAACCCTA------C i fr3.HE594383 C 0 I 2 s oreNil2.GL831313-1 185386 47 + 1571857 atgtt--tgcagatgatgtcTT-GGTCTTTTTGAGGGAACCTGAAGAATC i oreNil2.GL831313-1 C 0 I 2 s gasAcu1.chrIII 6435537 47 + 16798506 ATGTA--CGCAGATGACATTTT-ATTGCTGGTCAGGGACCCTCTGACATC i gasAcu1.chrIII C 0 I 2 s oryLat2.scaffold949 55651 47 - 66997 ttatt--tgcagatgatgtaTT-AATCTATTTAACACAACCCCTGAAGTT i oryLat2.scaffold949 C 0 I 2 s gadMor1.HE567998 1120470 47 - 2256342 CTCTA--TGCAGATGATATCCT-GACTTACATAAGTGATCCTGTCATATC i gadMor1.HE567998 C 0 I 2 s danRer7.chr22 8296837 47 - 42261000 ttata--tgcagacgacgtgct-tatatatatgacaaaaccggaattgtc i danRer7.chr22 C 0 I 2 s petMar1.Contig44859 1577 46 - 6016 -TCTA--TGCAGACGATATACT-ATTAATCATCACCGGGCCCGAAACCTC i petMar1.Contig44859 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-90696.000000 s mm10.chr1_GL456221_random 153453 11 + 206961 --TACC------AGAGAAC s tupBel1.scaffold_26217.1-1529 630 11 - 1529 --aaaa------aaaaaac i tupBel1.scaffold_26217.1-1529 N 0 I 7 s monDom5.chr1 156863720 11 + 748055161 --AACC------AAAAAGC i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259372 10 - 270121 --tacc------aaaaa-t i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 834 11 + 2168 --AAGT------AAAAAAC i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 619 11 + 1364 --AGCC------CAAAATC i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331270 9 - 2387735 ----CT------TAAAAAG i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11616971 9 + 14749333 ----TA------TGAAGGT i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1194004 10 + 3338395 --GTTC------AAAAAG- i xenTro3.GL172702 I 1 C 0 s latCha1.JH128317 361205 9 + 495207 --TGCC------AAGAT-- i latCha1.JH128317 I 2 C 0 s tetNig2.chrUn_random 63994646 9 - 107808587 --CCAG------AGAAC-- i tetNig2.chrUn_random I 2 C 0 s fr3.HE594383 2115 15 - 7085 --CCAGTCTCCCTGtaa-- i fr3.HE594383 I 2 C 0 s oreNil2.GL831313-1 185435 9 + 1571857 --TTGA------GGAGT-- i oreNil2.GL831313-1 I 2 C 0 s gasAcu1.chrIII 6435586 9 + 16798506 --TTCC------TTAGG-- i gasAcu1.chrIII I 2 C 0 s oryLat2.scaffold949 55700 9 - 66997 --TACC------AATAT-- i oryLat2.scaffold949 I 2 C 0 s gadMor1.HE567998 1120519 9 - 2256342 --TTCC------TGCAT-- i gadMor1.HE567998 I 2 C 0 s danRer7.chr22 8296886 9 - 42261000 --ttcc------aaccc-- i danRer7.chr22 I 2 C 0 s petMar1.Contig44859 1623 11 - 6016 AATCCC------GGCCC-- i petMar1.Contig44859 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-6713.000000 s mm10.chr1_GL456221_random 153464 7 + 206961 CCCTTAA s monDom5.chr1 156863731 7 + 748055161 TAATTGA i monDom5.chr1 C 0 I 1 s sarHar1.chr2_GL842197_random 259382 7 - 270121 tatcaaa i sarHar1.chr2_GL842197_random C 0 I 1 s ornAna1.Contig116551 845 7 + 2168 TACTTGA i ornAna1.Contig116551 C 0 I 1 s galGal4.chrUn_AADN03016568 630 7 + 1364 TCCTTAA i galGal4.chrUn_AADN03016568 C 0 I 4 s anoCar2.chrUn_GL343225 2331279 7 - 2387735 TTAACAA i anoCar2.chrUn_GL343225 C 0 I 11 s chrPic1.JH584471 11616980 7 + 14749333 TGGCCAC i chrPic1.JH584471 C 0 I 11 s xenTro3.GL172702 1194014 7 + 3338395 CCTTCCA i xenTro3.GL172702 C 0 I 1 s latCha1.JH128317 361214 7 + 495207 TATTAGA i latCha1.JH128317 C 0 I 1 s tetNig2.chrUn_random 63994655 7 - 107808587 TCCTAAA i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 2130 7 - 7085 ttttaga i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 185444 7 + 1571857 TGATGTC i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrIII 6435595 7 + 16798506 TTCTTTC i gasAcu1.chrIII C 0 C 0 s oryLat2.scaffold949 55709 7 - 66997 TAATGTC i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1120528 7 - 2256342 TGATGGA i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8296895 7 - 42261000 ttctaaa i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 1634 7 - 6016 TCCTGAA i petMar1.Contig44859 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e tupBel1.scaffold_26217.1-1529 641 7 - 1529 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-4271.000000 s mm10.chr1_GL456221_random 153471 1 + 206961 -C s tupBel1.scaffold_26217.1-1529 648 1 - 1529 -c i tupBel1.scaffold_26217.1-1529 I 7 N 0 s tetNig2.chrUn_random 63994662 1 - 107808587 -C i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 2137 1 - 7085 -t i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 185451 1 + 1571857 -C i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrIII 6435602 1 + 16798506 -T i gasAcu1.chrIII C 0 C 0 s oryLat2.scaffold949 55716 1 - 66997 -A i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1120535 1 - 2256342 -C i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8296902 1 - 42261000 -t i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 1641 1 - 6016 G- i petMar1.Contig44859 C 0 C 0 e ornAna1.Contig116551 852 1 + 2168 I e latCha1.JH128317 361221 1 + 495207 I e sarHar1.chr2_GL842197_random 259389 1 - 270121 I e monDom5.chr1 156863738 1 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e galGal4.chrUn_AADN03016568 637 4 + 1364 I e xenTro3.GL172702 1194021 1 + 3338395 I e anoCar2.chrUn_GL343225 2331286 11 - 2387735 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e chrPic1.JH584471 11616987 11 + 14749333 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=31502.000000 s mm10.chr1_GL456221_random 153472 66 + 206961 CTGATAAACAGCTTTGGTGAAGTAGCTG-GATATAAAATAAACTC--AAACAAGTCA-------------------ATGGCCTTTCTC----- s monDom5.chr1 156863739 66 + 748055161 ATAATCAACAACTTTAGCAAAGTTGCAG-GATACAAAATAAACCC--ACATAAGTCA-------------------TCAGCTTTTCTA----- i monDom5.chr1 I 1 C 0 s sarHar1.chr2_GL842197_random 259390 66 - 270121 ataatccacaattttaggaaagttgcag-gatacataacaaaccc--acataaatca-------------------tcagcattttta----- i sarHar1.chr2_GL842197_random I 1 C 0 s ornAna1.Contig116551 853 66 + 2168 ATAATAAACAGCTTTGGCAAAGTTGCAG-GTTACAAAATAAACCC--ACACAAATCT-------------------TCTGCATTCCTA----- i ornAna1.Contig116551 I 1 C 0 s galGal4.chrUn_AADN03016568 641 63 + 1364 ---ATAAGCAACTTCAGCAAAGTCTCAG-GATACAAAATCAATGT--ACAAAAATCA-------------------CAAGCATTCTTA----- i galGal4.chrUn_AADN03016568 I 4 C 0 s anoCar2.chrUn_GL343225 2331297 66 - 2387735 ATAATTAATAAATTCGGAGAAGTAGCTG-GATTcaaaataaatat--ggataagaca-------------------aaagcaatcaca----- i anoCar2.chrUn_GL343225 I 11 C 0 s chrPic1.JH584471 11616998 65 + 14749333 ATAATTGAAGGTTTGGGTCAGAAATCAG-GATATAGATTAAATTA--CTCTAAATCA-------------------GAGATACACCT------ i chrPic1.JH584471 I 11 C 0 s xenTro3.GL172702 1194022 66 + 3338395 ATCTTAGAAAACTATAGCCGAATCTCCT-ACTACAAACTGAACAT--AACTAAAACG-------------------CAAGCCCTCCCA----- i xenTro3.GL172702 I 1 C 0 s latCha1.JH128317 361222 66 + 495207 AGAATGgagaatttttcaaaaatatctg-gatataaaataaattg--gtccAAGTCA-------------------GAGGTCTTACTG----- i latCha1.JH128317 I 1 C 0 s tetNig2.chrUn_random 63994663 68 - 107808587 CTGATAAACAGCTTCGGTGAAGTAGCTG-GATATAAAATAAACTC--AAACAAGTCA------AT-----------GGCCTTTCTCTA----- i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 2138 59 - 7085 atttttgaaaaatttgGCAAATACTCTG-GTTACAAActcaattttggaaaaagtga----------------------------ctA----- i fr3.HE594383 C 0 C 0 s oreNil2.GL831313-1 185452 74 + 1571857 TCTCTATCCGTCTTTGGAGAACTGTCTG-GTTATAAATTAAacct--aaacaaaacacaggtaAT-----------GACACTAAACTA----- i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrIII 6435603 59 + 16798506 ATAATCGACGTCTTCTCAAAAATATCAG-GGTATAAAATAAATTG--GCATTAATCA--------------------------GAATG----- i gasAcu1.chrIII C 0 C 0 s oryLat2.scaffold949 55717 76 - 66997 TCCCTAAAAGAATTTGGACAATTATCAGAGCTACAGattaaatgtccaaaaaaaccC-AGATCTT-----------AACTCTCAATTT----- i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1120536 85 - 2256342 ACTTCAAAAGAATATGGAGAACTCTCTG-GCTATcagatcaacca--atcaaaatCAGAGGCAATGATGATAATTGGACAATGGCCTA----- i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8296903 68 - 42261000 gtattagaatcattcaaaaaattgtcag-gttttacaataaattgggacaaaagtga-------------------gttaatgcccct----- i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 1642 71 - 6016 GAGATTCAGGAATATGGAGAAGTGGCAG-GATATAAGctaaatgt--aaacaaacca-------------------GAAATAATGCCCATCTC i petMar1.Contig44859 C 0 I 31 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-121959.000000 s mm10.chr1_GL456221_random 153538 22 + 206961 TA---TACAAAG-AAT------AAACAGGCTG s monDom5.chr1 156863805 22 + 748055161 TA---TATCTCC-AAC------ACAGCTCAGC i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259456 22 - 270121 ta---catcact-aac------aaaatccaac i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 919 22 + 2168 TA---TATTAGC-AAG------AAAGTCCAAC i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 704 20 + 1364 TA---CACCAAT-A--------ACAGACAAAC i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331363 21 - 2387735 aa---aaatatt-a-c------aaagaaaaac i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11617063 18 + 14749333 -----CAGCTTC-A--------AAAGATACCC i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1194088 22 + 3338395 CT---GAACCTA-CCC------AAACCAGAGC i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361288 19 + 495207 T----TATCAAG-G--------GGAGCTATGC i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63994731 20 - 107808587 TA---CAAAGAA-TAA------ACAGGCTG-- i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 2197 20 - 7085 CA---TACCAAT-TAA------TTCAGCTG-- i fr3.HE594383 C 0 I 24 s oreNil2.GL831313-1 185526 26 + 1571857 TA---CAGCATC-TAAAACTTTACGAGATA-- i oreNil2.GL831313-1 C 0 I 4 s gasAcu1.chrIII 6435662 21 + 16798506 CA---TGCCAACATCA------AGAGGATG-- i gasAcu1.chrIII C 0 I 6 s oryLat2.scaffold949 55793 10 - 66997 TAATCCACCA---------------------- i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1120621 20 - 2256342 TA---CAACTAA-CAG------GAAGGCTT-- i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8296971 14 - 42261000 ta---cggagga-taa------tg-------- i danRer7.chr22 C 0 C 0 e petMar1.Contig44859 1713 31 - 6016 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-46229.000000 s mm10.chr1_GL456221_random 153560 20 + 206961 AGAAAG--AAATTAGGGAAACA s monDom5.chr1 156863827 20 + 748055161 AGCAAG--AACTAGAAAGAGAA i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259478 20 - 270121 tgcaag--agatacaaagagaa i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 941 20 + 2168 AGCAAG--AGATACAAAGAGAA i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 724 22 + 1364 AGAGAGCCAAATCATGAGTGAA i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331384 20 - 2387735 caggaa--agaataaaagaaaa i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11617081 13 + 14749333 TGTGAA---------TGATAAA i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1194110 20 + 3338395 AAAACG--ACCTGAAAAAAGAC i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361307 16 + 495207 CATACC--AGTTT----GTGGA i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63994751 20 - 107808587 AGAAAG--AAATTAGGGAAACA i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 185556 20 + 1571857 TAACAT--AAATTGGGAAGCTG i oreNil2.GL831313-1 I 4 C 0 s gasAcu1.chrIII 6435689 16 + 16798506 ----AG--CAATGATAGAAACA i gasAcu1.chrIII I 6 C 0 s oryLat2.scaffold949 55803 20 - 66997 AAACAG--CTTTTGAATAAATA i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1120641 2 - 2256342 -----------------AA--- i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8296985 20 - 42261000 atatac--attttttacaatcg i danRer7.chr22 C 0 C 0 e petMar1.Contig44859 1713 31 - 6016 I e fr3.HE594383 2217 24 - 7085 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-2530.000000 s mm10.chr1_GL456221_random 153580 1 + 206961 A s monDom5.chr1 156863847 1 + 748055161 A i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259498 1 - 270121 a i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 961 1 + 2168 A i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 746 1 + 1364 T i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331404 1 - 2387735 a i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11617094 1 + 14749333 T i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1194130 1 + 3338395 T i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361323 1 + 495207 C i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63994771 1 - 107808587 A i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 185576 1 + 1571857 A i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrIII 6435705 1 + 16798506 T i gasAcu1.chrIII C 0 C 0 s oryLat2.scaffold949 55823 1 - 66997 T i oryLat2.scaffold949 C 0 C 0 s danRer7.chr22 8297005 1 - 42261000 a i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 1744 1 - 6016 A i petMar1.Contig44859 I 31 C 0 e fr3.HE594383 2217 24 - 7085 I e gadMor1.HE567998 1120643 0 - 2256342 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-51792.000000 s mm10.chr1_GL456221_random 153581 187 + 206961 CACCCTTCTCAATAGTCACA-AATAATATAAAATATCTCGGCGTGACTC----------TAACTAAGGAAGTGAAAGATCTGT--ATGATAAAAAC--TTCAAATCTC-----------------TGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGG-AAAGATCT---CCCatgttc---atggattggcaggatcaacattg--taaaaatggctatcttgcc s monDom5.chr1 156863848 187 + 748055161 TCCCATTCAAAATCACCTTG-GACAAAATAAAATACCTAGGAATCTACC----------TCCCGAGACAAACACAGGAACTAT--ATGAATATAAC--TACAAGACAC-----------------TCACCACACAACTAAAACTAGACTTGAGCAATTGG-AAAAACAT---TAACTGCTC---ATGGATAGGATGAGCCAATATAA--TAAAAATGACCATCCTACC i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259499 188 - 270121 ttccatttaaaataattctc-aataatataaaatatctgggaatctatc----------tgccaagggaaaatcaggaagtat--atgagcaaaac--tacaaaacac-----------------ttaccacacaaataaagtcagatataaacaattggaaaaaatat---taagatctC---TTgtataggtcgagcaaatataa--taaagatgacaatattatc i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 962 187 + 2168 TCCCATTTAAAACTAGGGTA-GACACTACAAAATACTTAGGAGTTTACC----------TGCCAATACAAACCCAGGGATTAT--ATGAACACAAT--TACAAGACAT-----------------TTTTTGCACAAATAAAGTCAGATTTAAGTAAGTGG-AAAAACAT---CAGTTGCTC---ATGGGTAGGCTGTGCTAATATAA--TAAAAATGACAATTCTATC i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 747 187 + 1364 TCCCATTCACAATTGCttca-aagagaataaaataccTAGGAATCCAAC----------TTACAAGGGACGTGAAGGAACTCT--TCAAGGAGAAC--TACAAACCAC-----------------TGctcaatgaaataaaataggatacaaagaaatgg-aagaacat---TCCATGCTC---ATGGGTAGGAAGAATCAATATTG--TGAAAATGGCCATACTGCC i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331405 185 - 2387735 ttgaatatacaaat--ctca-acaaaaataaaCTATTTGGGCATTATAA----------TTACACCAAAAAATCTACAACTGT--TAGAAAACAACTATAcgaagaaa-----------------tg--gaaagaaataaaaaaagatttggaaGCATGG-GGGAGACTAAATCTATCTCT---AT---TAGGAAGAGTTGCTAGTG--TGAAAATGAACATTCTGCC i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11617095 168 + 14749333 GCTTATTGAAAATAGAGGAT-AATAAAATCAGATATTTAAGCATTAATG----------TATCATTTAAAGAGGGGGAagtgt--ttaaattaaat----------at-----------------tgagtcattaatgaaaattacTTACAATGA-----------------CCTTTCTAG---AAAGGTGGACATTATTGCCATTGGCTTAAAATGAATATCCTGCC i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1194131 187 + 3338395 ATTCCTTTCAATGGAAACAA-GAAACCCTAACCTATCTGGGAATTGAAC----------TAGCAAATAACATCCCTAACACAT--ACAGCAACAAC--TATCCAAAAC-----------------TATTAAAGCAAATACAATCACAACTGGAAAATTGG-AAACCACT---ATACATATC---ATGGCTAGGCCGAATGGCAGCAA--TAAAAATGATGACGCTACC i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361324 188 + 495207 TGGAATTTCAAATGGACAAGCAGGGATATGAAGTATTTAGGTATATTAT----------TA--AATAAGGGTTTAGAAAGTATCATGGCTGACAAC--TTAGACCCTT-----------------TAATAGAGAGGATAAGAATTCTGCTAGAGGAATGG-GGAAAATT---GAGATTAAC---ATTATGGGGAAAGGTACAGGTTA--TTAACATGATGGTGACTCC i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63994772 187 - 107808587 CACCCTTCTCAATAGTcaca-aataatataaaatatctTGGCGTGACTC----------TAACTAAGGAAGTGAAAGATCTGT--ATGATAAAAAC--TTCAAATCTC-----------------TGaagaaagaaattaaagaaGATCTCAGAAGATGG-AAAGATCT---CCCATGCTC---ATGGATTGGCAGGATCAACATTG--TAAAAATGGCTATCTTGCA i tetNig2.chrUn_random C 0 C 0 s fr3.HE594383 2241 187 - 7085 TACCCTTTAGGAAGGCCTCA-GACGGTTTTAAATACTTGGGAATTTTAG----------TGACAAGATCATTTTCTGAACTAT--TTGCCAAAAAT--TATATCCCAT-----------------TAATCGAACGTTGCAAATCAGACCTTGCCAGATgg-tcctctct---ccccctctc---tttgaTCGGCCGTGTCAAcctaa--taaaaatgtcaatactCCC i fr3.HE594383 I 24 N 0 s oreNil2.GL831313-1 185577 168 + 1571857 AACACTT-----------------------AAATACTTGGGAATAATTC----------TAACTAAGAATATTTCTAATCTAT--CACAAGTAAAT--TATGGTCCCT-----------------TGTCACAGGCCATAAAATTTGATTTAGACAGGTGG-AATCTGGT---GCCtttcttaaatttaaattcaaggATATTAGCAG--TGAAAATGAACGTACTCCC i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrIII 6435706 181 + 16798506 TTCAGTTTAAATGGATCCCA-AAGGGTCTAAAATATCTGGGAATTAGGCTCTGTTCAGATATCGAAAACATTATCTCTTTT------------AAT--ATGGCCCCTT-----------------TAATGCAAAAGATGAAGTTGGA------CAAATGG-AAATTGAT---ACATTTTAC---GTTATGGGGAAAAATGTATATTA--TTAAGATGATACTGGCTCT i gasAcu1.chrIII C 0 C 0 s oryLat2.scaffold949 55824 205 - 66997 --GACCTGATATGTACTACA-AATACAATGAAGTACCTAGGAATTAACC----------TCACCCAAGATATTACTAAATTAT--TTGATGCAAAT--TATGCCCCTCTaaacttaataaaataataataataataataaaatcagaCATTTCCAGATGG-ACTCATCT---ACCATTCCTTAACTTATCTTCAAGGATAGACACAA--TTAAAATAGTTATCCTGCC i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1120643 180 - 2256342 -----TGCTCATTGGTCACA-G--GGATTTAGATACCTGGGAATCATTA----------TTACAAATGATTTATCAAAACCGT--TCAAGGTCAAC--TATGGAAAAT-----------------TGTTGGGCCACATAAAAGCAGACCTAACAAGATGG-GAAATCCT---GCCACTCTC---TTTGATAGGGAGAATAGAAACGA--TAAGAATGAATGTCCTACC i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8297006 187 - 42261000 ctccatttaaaataactcat-aattcatttaaacatttaggaattaata----------ttacaaaaaaggcagaggctttat--taaaatccaat--tggcacgtta-----------------aattaaatcagttaaaagacaatataaaattttgg-atgacttt---accaatttc---tatggtaggaaaaattaacgcaa--ttaagatggtaacacttcc i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 1745 187 - 6016 CCCCCTTCAAATGGTGCCCT-CGGAGGATTCAATATCTCGGAGTCGTCA----------ATCCGAGTAGGCTGAGTGAGCTTT--TTCAGGTGAAC--TTCCCCCATC-----------------TACGCCAAGAGATCCAAACTCCCTTGGCAGTGTGC-AATGATAT---CCCATTGTC---TCTTCCTGACAGGGTATACTTGA--TTAAAATTATGATCCTCCC i petMar1.Contig44859 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-196827.000000 s mm10.chr1_GL456221_random 153768 191 + 206961 aaaagcaatctacagatt-----caatgcaatccccatcaaaat---tccaactcaattct------tcaatgaat----------tagagggagcaatt------tgcaaatttgtctagaa-taacaaaaaacctaggatagcaa--aaa--------------gtcttctca--agg----a-------taa--------------aagaac----ttctggcgg---aatcaccatgccagacctaaaactgtactacagagcaattg s monDom5.chr1 156864035 191 + 748055161 CAAACTTATTTATCTATT-----TAGTTCCATACCCATGGAACT---CCCAAAAAATTTCT------TTACTGATC----------TAGAAAAAAACGTA------ACAAAGTTCATTTGGAA-TAACAAAAGATCAAGGATATCCAGGGAA--------------AT------A--ATG----A-------AAA--------------AAAAACACAAATGGGGGGG---CCTTGCAGTCCCAGACCTCAAACTATATTACAAAGCAGCAG i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259687 189 - 270121 taaactaatctacttatt-----taatgctatatc----agact---cccaagaaactatt------ttaatgacc----------tagaaaaaagtaca------ccaaaattcaactggaa-gaacaagaggtcaagaatttcaagggaa--------------gt------a--atg----a-------aaa--------------aaaaat-caaatgaagtggtattctagctgtacctgatctacaactctattataaagcagagg i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 1149 190 + 2168 TAAATTAATTTACTTATT-----TAGTGTCATACCAATTAAACT---ATCAGACAATTATT------TCCA-GAGC----------TGGATAAAATAATA------TCAAAATTCATTTGGAA-GAACAAAAGTTTCAGAATATCAAAGGGA--------------CT------A--ATG----A-------AAA--------------GAAGTGCTTGGGAAGGTGG---CCTAGCTCTACCAGATCTCAAATTGTACTATAAAGCAGCAA i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 934 192 + 1364 CAAGGTAATTTATAGATT-----TAATGCCATCCCCATCAAGCT---ACCAATGACTTTCT------TCATAGAAT----------TGGAAAAAACTACT------TTAAAGTTCATATGGAA-CCAAAAAAGAGCCCGCATTGCCC--AAG--------------TC------A--ATCCTA-A-------gcc--------------aaaagaacaaagctggAGG---CATCACGCTACATGACTTCAAACTATACTACAAGGCTACAG i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331590 185 - 2387735 AAAGATGAT----------------ATTCCTTTTCCa-aaattt---accaataa-----taagaaatcaaaaaataataaatggatggaaaagagatct-----aatgaaatatatatgGCG-GGGGGAAAAAGCAAGGATAAACT--ATA--------------AG------A--ACATGATA-------GAA--------------GAAAAAATAAA---GGGGG---ACTAGCAATGGCAGATCTGAAATTATACTTCGAAGC----- i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11617263 182 + 14749333 CAGGGTCTTATATCCTTTTTCCATGATTCCCTTTACA----TCT---CCCCAAAA-TTCCt------tctagacat----------tttaaaaagctattcAAAGATTAGGTCAAATCAGAAA-CCaagaatcaaaatgaaatgact--gGA--------------AC------A--TCC----A-------GTT--------------GGGATG--------GGAGG---CCTGGCACTTCCAGACTTCAAAAGATACTATAGGGC----- i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1194318 192 + 3338395 CAAACTACTCTACTTGTT-----CAGAGTCCTACCTATTACGCT---ACCCCAAACATTCC------TCCGGCAGA----------TCCAAACAACAATA------GACACATTTATATGGAATGGAAAAAAAACCAAGAATAAAACGTAAA--------------CA------C--ATG----C-------AAC--------------AGCACACAAAAGAAGGAGG---CTTTGGAGTCCCCAGTATAGAGAACTATTACAAAGCTGCAA i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361512 186 + 495207 TAAAATCAATTACATACA-----TAGTATGATACCCTTGAGAAC---TCAGGATAAAACAC------ATAAGATAA----------TAGAACAAATGTTT------TCACATTTTCTATGGAA-TAATAAGAAACCACAGGCT------AAA--------------TT------G--AGC----A-------GACTTTTCCCTACACTGGAAAAA--------GGGGG---GCTAAAATTACCAAATATAAGGGAATATCAAAGGGC----- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63994959 191 - 107808587 AAAAGCAATCTACAGATT-----CAATTCAATCCCTATCAAAAT---TCCAACTCAATTCT------TCAACGAAT----------TAGAAGGAGCAATT------TGCAAATTCATCTGGAA-TAACAAAAAACCTAGGATA----GCAAA----------AACTCT------T--CTC----A-------AGG--------------ATAAAAGAACCTCTGGTGG---AATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTG i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 185745 191 + 1571857 AAGACTCCTctatttatt-----tagaattttgCCGGTTGAAGTAAGTCAAACACAG---T------TTGGGGAAT----------GGGACAAATGGATT------TCGCGCTTTATTTGGCA-TGGGAAAAAACCAAGAAT------TAAA-------TTTAGATCT------T--TAC----AGTTAAACAAG--------------GCAAAA--------ggggg---ggCAATGCTCCCATATTTACAATACTACTATTACGCATCTC i oreNil2.GL831313-1 C 0 C 0 s gasAcu1.chrIII 6435887 182 + 16798506 GCAATTTAACTACATTTC-----CATGATGATTCCAGTAACCAT---CTCTGAAAGGATCT------TTAAAGAAT----------ATAATCACTTAATT------GAGGATTTTTTATGGAA-TAACAAAAAAAC--GTAT-----GAAAA----------AGCTCT------TGCCTC----A-------AAA--------------GGTAAT--------GGAGG---AATGGCTCTTCCAAATATGGAATTATATAGTATAGCATTTG i gasAcu1.chrIII C 0 C 0 s oryLat2.scaffold949 56029 191 - 66997 TCGCTTAATGTATCTTTT-----CCAGATGCTACCAATTGAAAT---AAAAGATCAGCAAT------TCATTGAAT----------GGGACAAGATGATT------TCACGTTATATTTGGAA-GGGTAAGAGACCCAGAATACGCTACAAA---GTAATGCAACTGT------C--T--------------AAG--------------GACAAA--------GGGGG---TATGGCACTACCAACCCTCAAGGATTATTATTATGCGGCTC i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1120823 191 - 2256342 AAGATTGCTTTTTCTCTT-----TCAATCACTACCTATATATGT---CCCTGTGGCCACTT------TTACTACAC----------TGAACAAATGGTTA------TCCAAATTTATATGGCA-GAGAAAACCTCCCAGACT------TAAACTTGGAAGACTACTGT------G--CCC----A-------AAA--------------GACAAC--------GGAGG---CCTGAACTTGCCTGCCCTGAAAAAATATTACTGGGCAGCCC i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8297193 191 - 42261000 cagattcttatatttatt-----tttgtccattccagtttttat---tccagttaaactat------tcacaaaat----------tagattccataata------acttcatttatatggaa-ttataaaactgttaggatatctaaaaaa----------cactta------t--gta----aatct---aaa--------------gtaaaa--------ggagg---attcaaccttccttcgttcaaacattattattgggctgcaa i danRer7.chr22 C 0 C 0 s petMar1.Contig44859 1932 186 - 6016 AAAGATGTAGTACCACCT-------GAGTGATTCCAACGTGGAT---CCCACAAACCTTTA------TTCGGAAAT----------TGCACTCCAACATT------TCCTCTTTAATCTTGAA-TTGCAAAGCCGCGAGAATAAGTT--AGA-----------CCCTT------A--CCC----A-------GAC--------------AAGGAG----TGAGAGAGG---ACTTGCTCTACCGGACTTTGGAAAATACTACCTCACAGCTG i petMar1.Contig44859 C 0 N 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-81730.000000 s mm10.chr1_GL456221_random 153959 25 + 206961 tgat---aaaaactgcatgg--------t------gctggta s monDom5.chr1 156864226 25 + 748055161 TCAT---CAAAACAATTTGG--------T------ACTGGCT i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259876 25 - 270121 tcac---caaaaaaaTTTAG--------T------ATTGGCT i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 1339 25 + 2168 TTAT---CAAAACCACTTGG--------T------ATTGGCT i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 1126 25 + 1364 TAAC---CAAAACAGCATGG--------T------ACTGGTA i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331775 29 - 2387735 -AAG---CGCTCTGGCGTGG--------TTTAGAGATTGG-G i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584471 11617445 19 + 14749333 -AGCA--CAAATTAGAAAGG--------T------------A i chrPic1.JH584471 C 0 C 0 s xenTro3.GL172702 1194510 19 + 3338395 TC-T---TGGAACAACTAGC--------T------A-----T i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361698 31 + 495207 -ATT---CAACATAGCTCAGATTACTTCT------ATTTT-T i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63995150 25 - 107808587 TGAT---AAAAACTGCATGG--------T------ACTGGTA i tetNig2.chrUn_random C 0 I 4 s oreNil2.GL831313-1 185936 25 + 1571857 AGGT---CATCCCCCTGCTG--------C------AATGGTG i oreNil2.GL831313-1 C 0 I 12 s gasAcu1.chrIII 6436069 28 + 16798506 AAATGAATAAGCTAGCAAGG--------C------ACTGGCA i gasAcu1.chrIII C 0 N 0 s oryLat2.scaffold949 56220 28 - 66997 AAATAAGACCACTTGTAGGT--------C------TCTGCGA i oryLat2.scaffold949 C 0 I 9 s gadMor1.HE567998 1121014 26 - 2256342 AATTACGAGCAATGGT--TG--------C------TTGGGTA i gadMor1.HE567998 C 0 I 11 s danRer7.chr22 8297384 28 - 42261000 atttacagtcccttgcttgg--------t------ggagaca i danRer7.chr22 C 0 I 6 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-98989.000000 s mm10.chr1_GL456221_random 153984 42 + 206961 tagagacagacaagtaga-caa-----------tgga-----atagaattgaagaccca s monDom5.chr1 156864251 40 + 748055161 AAGAGACAGAAAGGAGGATCAG-----------TGGA-----ATAGACTGGGGGCA--- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259901 43 - 270121 AATAAAtacactagttgatcag-----------tgga-----ataggttaggttcacag i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 1364 43 + 2168 AAGAAACAGAGCGGTAGACAAG-----------TGGA-----ATAGACTTGGCACTCAA i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 1151 39 + 1364 CCAAAACAGAGATATAGATCAA-----------CGGA-----ACAGAACAGAGCC---- i galGal4.chrUn_AADN03016568 C 0 I 4 s anoCar2.chrUn_GL343225 2331804 39 - 2387735 CTAAAATGgag--aaagataaaata-ttaattccGGA-----GGGGA------------ i anoCar2.chrUn_GL343225 C 0 I 2 s chrPic1.JH584471 11617464 59 + 14749333 CTAGAACAGTGCTCTAGTCGAGAGACTCCATCACGGATACAGATGGAACAGAAACTGGC i chrPic1.JH584471 C 0 N 0 s xenTro3.GL172702 1194529 49 + 3338395 GTGGAACCTACCTCCTGACCACAAACACTGGCTACAA-----ATAGAACAGGAA----- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361729 41 + 495207 AAGGAAGATATGTATAGACCAT----TATGGACAGAA-----ATAGAAGG--------- i latCha1.JH128317 C 0 I 1 s tetNig2.chrUn_random 63995179 39 - 107808587 --GACAGACAAGTAG--ACCAA-----------TGGA-----ATAGAATTGAAGACCCA i tetNig2.chrUn_random I 4 C 0 s oreNil2.GL831313-1 185973 39 + 1571857 --GAAAGCTAAGTGGAAATCCA-----------TAGA-----ATTCGATAGA--ACCCT i oreNil2.GL831313-1 I 12 C 0 s oryLat2.scaffold949 56257 40 - 66997 --TAGGGCAAGGTGGAAGGAAA-----------TAGA-----AGAGGG-GGAACACACA i oryLat2.scaffold949 I 9 C 0 s gadMor1.HE567998 1121051 40 - 2256342 --AGACACTATATGGGTGGGAA-----------TGGA-----GCAAAG-TGAATGCCCG i gadMor1.HE567998 I 11 C 0 s danRer7.chr22 8297418 41 - 42261000 --agaagacattaaagaaacac-----------caga-----atgggttttactagaaa i danRer7.chr22 I 6 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-47507.000000 s mm10.chr1_GL456221_random 154026 11 + 206961 gaaatga----------accc----- s sarHar1.chr2_GL842197_random 259944 11 - 270121 gacaaaa----------tagt----- i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 1407 11 + 2168 GACACAG----------TAGG----- i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 1194 11 + 1364 GAAATAA----------TGCC----- i galGal4.chrUn_AADN03016568 I 4 C 0 s anoCar2.chrUn_GL343225 2331845 11 - 2387735 GGATTAA----------GATC----- i anoCar2.chrUn_GL343225 I 2 C 0 s chrPic1.JH584444 2207033 11 - 6443626 ---ttaa-------CCTAGCC----- i chrPic1.JH584444 N 0 C 0 s xenTro3.GL172702 1194578 11 + 3338395 AAAATAC----------AACC----- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361771 11 + 495207 GGCTTAA----------ccca----- i latCha1.JH128317 I 1 C 0 s tetNig2.chrUn_random 63995218 11 - 107808587 -----GA----------AATGAACCC i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 186012 11 + 1571857 -----AA----------ATTTCAACA i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 56297 11 - 66997 -----GA----------ACCTCCCAT i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121091 21 - 2256342 -----GACACACCACTGGACTCATTC i gadMor1.HE567998 C 0 C 0 s danRer7.chr22 8297459 7 - 42261000 -----ga----------acctc---- i danRer7.chr22 C 0 N 0 e monDom5.chr1 156864291 0 + 748055161 C e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-9618.000000 s mm10.chr1_GL456221_random 154037 5 + 206961 acaca s monDom5.chr1 156864291 4 + 748055161 -AGCG i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259955 5 - 270121 caata i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 1418 5 + 2168 CAAGG i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 1205 5 + 1364 ACATA i galGal4.chrUn_AADN03016568 C 0 C 0 s anoCar2.chrUn_GL343225 2331856 5 - 2387735 AGGTT i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584444 2207044 5 - 6443626 ACAAG i chrPic1.JH584444 C 0 I 33 s xenTro3.GL172702 1194589 5 + 3338395 ACTCA i xenTro3.GL172702 C 0 I 1 s latCha1.JH128317 361782 4 + 495207 aaat- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63995229 5 - 107808587 ACACA i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 186023 5 + 1571857 ACAAG i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 56308 5 - 66997 CCAAA i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121112 5 - 2256342 CCATT i gadMor1.HE567998 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-86710.000000 s mm10.chr1_GL456221_random 154042 35 + 206961 -----------cctatggtcact--tgatctttgacaagggagct------------------aaa s monDom5.chr1 156864295 31 + 748055161 -----------ACCTCAGCAAGA--CAGTATACGATA----AACC------------------CAA i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259960 31 - 270121 -----------actatagtaatc--tagtgtttgaca----aact------------------caa i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 1423 31 + 2168 -----------AATATAGCAACC--TTCTGTTTGATA----AACC------------------CAA i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 1210 31 + 1364 -----------TCTACAACTATC--TGATCTTTGACA----AAcc------------------tga i galGal4.chrUn_AADN03016568 C 0 I 4 s anoCar2.chrUn_GL343225 2331861 31 - 2387735 -----------GGCATTCGTACA--TATGGtacgaaa----aaga------------------aaa i anoCar2.chrUn_GL343225 C 0 I 4 s xenTro3.GL172702 1194595 51 + 3338395 -----------ATTACAACAATTAATGTGGTCCGAAA----AACCTTTGCAACTAACAAAAGGCAA i xenTro3.GL172702 I 1 I 1 s latCha1.JH128317 361786 26 + 495207 -----------acaaaaatagat--tGCTACTT--------AACC------------------CA- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63995234 35 - 107808587 TCTATGGTCACTTGATCTTTGAC--AAGGGAGCTA-A----A------------------------ i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 186028 27 + 1571857 C---------CTCAATTGCGGAT--AAAAAATTGGCA----G------------------------ i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 56313 27 - 66997 C---------CAAGATAGCACAT--AGTAAACTGACA----A------------------------ i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121117 27 - 2256342 C---------CTGAATTTGGCCT--GTGGGAAGAATA----A------------------------ i gadMor1.HE567998 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e chrPic1.JH584444 2207049 33 - 6443626 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-125505.000000 s mm10.chr1_GL456221_random 154077 70 + 206961 accatccag----tggaagaaagacagc----------attttcaacaattggtgctggcacaactgg---ttgttatcgtgtag--------aa s monDom5.chr1 156864326 74 + 748055161 AGATCCCAGGTTTTGGGACAAAAATCCA----------CTATTTGATAAAAACTGCTGGGAAAATTGG---AAGACAGTGTGGGA--------GA i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 259991 74 - 270121 agaccccagttttggggataagaatgca----------ctatttaacaaaaacttctgggaaaattgg---aaattagtatggca--------ga i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 1454 74 + 2168 GGGCCCCAGCTTCTGGTATAAGAACTCA----------CTGTTTGACAAAAATTGCTGGGAAAAATGG---ATAACGGTGTGGCA--------GA i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 1245 70 + 1364 ----aacaagcaatggGGAAAGGATTCC----------CTATTTAATAAATGGTGCTGGGAAAACTGG---CTAGCCATATGTAG--------AA i galGal4.chrUn_AADN03016568 I 4 C 0 s anoCar2.chrUn_GL343225 2331896 68 - 2387735 ----gaaaaaaacttcggAAACCATT------------TTATAAGATCAGCGATTCTAAAGGTATGGA---TGAAGTATAAGAAT--------AG i anoCar2.chrUn_GL343225 I 4 C 0 s chrPic1.JH584444 2207082 74 - 6443626 ----CACAGATTACTAAAAAGTCATGCCTGCCAAAAATTTACACAA------ATCCTTTAGCAATGGG---TTTGGATTTGGGAT--------AG i chrPic1.JH584444 I 33 C 0 s xenTro3.GL172702 1194647 57 + 3338395 --------------------ACCATCTA----------CCATACAACAACCACTGCGCTAAAGATCTGGACCCAACAAAAAGCCA--------AA i xenTro3.GL172702 I 1 C 0 s latCha1.JH128317 361812 69 + 495207 ACAAACAAAGGAAATGAGGACAAACCCA----------ATTTTGGATTA----TTCCAGGAAAATATG----GGAGAGTATGTAC--------AA i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63995269 70 - 107808587 ----ACCATCCAGTGGAAGAAAGACAGC----------ATTTTCAACAATTGGTGCTGGCACAACTGG---TTGTTATCATGTAG--------AA i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 186055 52 + 1571857 ----ACCGTTTAGAAGATAAAGGAC--C----------ATGGATAA-----------GCCACA--------CTCTAAAAATATGG--------AA i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 56340 47 - 66997 ----A-----TAACTGACGAAAACC--C----------ATGGCTAA----------------AAATAT---CATTGAAAATATGG--------CG i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121144 50 - 2256342 ----GATTTCCAACA------------T----------ATGGGtta----------------aaaata---ctttaaaaataTGGTCAGTTGTGA i gadMor1.HE567998 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 32819 1990 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-32501.000000 s mm10.chr1_GL456221_random 154147 5 + 206961 -ga-atg s sorAra1.scaffold_221719 34809 5 + 35690 -aa-aat i sorAra1.scaffold_221719 I 1990 I 52 s monDom5.chr1 156864400 4 + 748055161 --G-ATT i monDom5.chr1 C 0 I 1 s sarHar1.chr2_GL842197_random 260065 4 - 270121 --a-agt i sarHar1.chr2_GL842197_random C 0 I 1 s ornAna1.Contig116551 1528 4 + 2168 --A-ATT i ornAna1.Contig116551 C 0 I 1 s galGal4.chrUn_AADN03016568 1315 4 + 1364 --A-GCT i galGal4.chrUn_AADN03016568 C 0 I 1 s anoCar2.chrUn_GL343225 2331964 5 - 2387735 --GTTCT i anoCar2.chrUn_GL343225 C 0 I 1 s chrPic1.JH584444 2207156 4 - 6443626 --A-ACT i chrPic1.JH584444 C 0 I 1 s xenTro3.GL172702 1194704 5 + 3338395 -AA-ACA i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361881 5 + 495207 -AA-AGG i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63995339 5 - 107808587 GGA-TG- i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 186107 5 + 1571857 TAA-AG- i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 56387 5 - 66997 GAA-AA- i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121194 5 - 2256342 AGA-AG- i gadMor1.HE567998 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-67938.000000 s mm10.chr1_GL456221_random 154152 21 + 206961 cgaattga--------------------------tccatactt--------------a---tct s monDom5.chr1 156864405 21 + 748055161 GGAATTGA--------------------------TCAACACCT--------------C---ACA i monDom5.chr1 I 1 C 0 s sarHar1.chr2_GL842197_random 260070 21 - 270121 ggcattaa--------------------------cctacactt--------------a---aca i sarHar1.chr2_GL842197_random I 1 C 0 s ornAna1.Contig116551 1533 21 + 2168 GACGTAAA--------------------------CCCATACCT--------------G---ACA i ornAna1.Contig116551 I 1 C 0 s galGal4.chrUn_AADN03016568 1320 21 + 1364 AAACTGGA--------------------------TCCCTTCCT--------------T---ACA i galGal4.chrUn_AADN03016568 I 1 C 0 s anoCar2.chrUn_GL343225 2331970 21 - 2387735 TGACAAAA--------------------------TACCACTCT--------------G---GCT i anoCar2.chrUn_GL343225 I 1 C 0 s chrPic1.JH584444 2207161 19 - 6443626 GAG--GTA--------------------------TCTGTTCTT--------------T---TCC i chrPic1.JH584444 I 1 C 0 s xenTro3.GL172702 1194709 14 + 3338395 ------CA--------------------------TCCACAATT--------------T---TC- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 361886 35 + 495207 AGCAGAAA--------------------------TCTGCATATACTGTTTTGGAAGCT---TCA i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63995344 21 - 107808587 CGAATCGA--------------------------TCCATACTT--------------ATCT--- i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 186112 15 + 1571857 TGACTAAA-----------------------------ATATGT--------------G------ i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 56392 44 - 66997 TAGTTAAAAACGACGGGGAGCATACGACACAGATTTTATACCT--------------A------ i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121199 28 - 2256342 AAATTAAAACTTCCCATGAAT----------------ATATCC--------------A------ i gadMor1.HE567998 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 34814 52 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-70369.000000 s mm10.chr1_GL456221_random 154173 20 + 206961 ccttgtactaa--gg---tcaaa-tc s monDom5.chr1 156864426 19 + 748055161 CC-TACACCAA--GA---TAAAT-TC i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260091 20 - 270121 ctgtacaccaa--ga---taaga-tc i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 1554 20 + 2168 CCGTACACAAG--AA---TAAAG-TC i ornAna1.Contig116551 C 0 C 0 s galGal4.chrUn_AADN03016568 1341 20 + 1364 CCTTATACAAA--AA---TCAAT-TC i galGal4.chrUn_AADN03016568 C 0 N 0 s anoCar2.chrUn_GL343225 2331991 20 - 2387735 ATCACCACTTG--AA---GCGGT-CC i anoCar2.chrUn_GL343225 C 0 I 8 s chrPic1.JH584444 2207180 20 - 6443626 CTCGTCAATAA--CA---CCCAT-TC i chrPic1.JH584444 C 0 I 4 s xenTro3.GL172702 1194723 15 + 3338395 -----CAGCAA--AA---CTCTC-AC i xenTro3.GL172702 C 0 I 16 s latCha1.JH128317 361921 21 + 495207 CTCTGGAATAATCCA---CAAAT-T- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63995365 20 - 107808587 CCTTGTACTAA--GG--TCAAAT-C- i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 186127 15 + 1571857 ----GTAGTGA--A----CAAATAC- i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 56436 18 - 66997 ----ACAGGAC--AGACTCAAGA-T- i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121227 14 - 2256342 ----GAGCTAT--A----AGAAT-T- i gadMor1.HE567998 C 0 C 0 s danRer7.chr14 39938251 19 - 53733891 TTATCTAGTAT--A----AGTACAC- i danRer7.chr14 N 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 34814 52 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-432411.000000 s mm10.chr1_GL456221_random 154193 163 + 206961 taagtggatcaaggaact-------tcacataa--aacca-gag-acac-----tga-aac---------ttatagaggagaaagtggggaa--aagccttgaagatatgggcacaggg----aaaaaattcctgaacagaacagcaat---ggcatgtgctgtaagat----cgagaattga---caaatgggacctaatgaaa--------------------- s monDom5.chr1 156864445 167 + 748055161 AAAATGGGTGAAAGACTT---TTTGCAGCATAA--AG--A-AGG-AAAC-----CAT-AAG---------TAAATTGGGTAAACACAGAATAGTATACATGTCATACCTTTGGGAGGGG----AAAGACTTTAAAACCAAGCAAGACAT---AGAAAGAATCACAAAAT----GTAAAATAAA---TAATTTTGACTACATCAAA--------------------- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260111 162 - 270121 aaaatgggttgatgatct-------aggcataa--ag--a-atg-agat-----tat-aaa---------taaattagaagaacataggatagtttacctctcagatttgtggaggaaa----aagaaatttctaaccaaagaagaact---agtgatcattat-tgat----cagaaatata---aaattttgattagatcaag--------------------- i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 1574 163 + 2168 CAAAAGGGTACATGATTT-------AGGTATAA--AG--A-TTG-ATAC-----CAT-GAA---------TAAACTGGAGAAGCAAGGAATAGTGTATTTATCAGATTTACCGAGGAGG----GAAGAATTTTTTACTAAAGAAGAGAT---AGAAAGCATTATGAAAG----GCAAAATGGA---TAATTTTGATTACATTAAA--------------------- i ornAna1.Contig116551 C 0 C 0 s anoCar2.chrUn_GL343225 2332019 130 - 2387735 GAAATGGGGTGGAAACGA-------TGGCCGAG--ATATA-AGG-ATCT-----agtagaa---------aagaaggaaggagaatggaA-----------------------ACTGAA----GACAC-----------AGCAAGAGAT----GAACAAAATAGATAAG--------AATATATCCTGGTTCCAGTATTggcaag--------------------- i anoCar2.chrUn_GL343225 I 8 C 0 s chrPic1.JH584444 2207204 166 - 6443626 TAATCCAGATTTTAACCC-------AAATCAAG--AACTA-CAG-AGCT---------TCA---------AAGATGGGAGAAAAGTGGAATACACATGGTTGGCCAGTTATTCAGTAAA----GAAACTTCTCTAATTTATTTAGAGAT--CAGAACTAACTTTAACTG----GCCCACTGGCCCCTGGTACCAGTACTTTCAAG--------------------- i chrPic1.JH584444 I 4 C 0 s xenTro3.GL172702 1194754 175 + 3338395 AACAATGATCCCCAACTT-------ATCCATAACCAACTG-GAG-TCACCTAGGCAT-CCA---------AAACTTGGAACAACTTATAACAGACAACACAATGAAACCATACGAAGAACTGCAAAGGGATTATAAATTACCGAAACAT--------GACTTATACAAGTACCTACAAATTCG---CCACCTACTCACCCCCTAC--------------------- i xenTro3.GL172702 I 16 C 0 s latCha1.JH128317 361942 154 + 495207 -AGAATAGACAATAAACG-------GTTCAAAT--GG--G-GCA-AATG-----GAT-CAA---------TAAA---GGACTCTATAGAATAGGAGATCTGTTTAA-------GGAAGG----CAAACTCCTGGAATTTAAAGAGATAC---AAGATAAA-TATCAAAT----AACAAGTGAGGAATGGTATAGATACAGACAAC--------------------- i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 63995385 163 - 107808587 TAAATGGATCAAGGAACT-------TCACATAA--AACCA-GAG-ACAC-----TG--AAA---------CTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGG-GCACAGGG----AAAA-------------------AATTTCTGAACAGAACAGCAATG----GCTTGTGCTGTAAGATT--AAGAATTGACAAATGGGA------CCTAATGAAA i tetNig2.chrUn_random C 0 N 0 s oreNil2.GL831313-1 186142 167 + 1571857 TAAAAGTATTTAGATGGT-------GTGCTTAT--GA-CA-CAG-ATTT-----TA--AAC---------CAAATGAAAGTGATAATAGATTTCAGTCCTGGATAGAGAGTGGACTAAC----AAGATT----------------CCATTCCTTCAC---ACATAAAGG----G---ACACTACAGAGTTTCCAGTCTTTACAAAGAAGAAAT-GGCTTAAGACAA i oreNil2.GL831313-1 C 0 I 8 s oryLat2.scaffold949 56454 151 - 66997 TCAAAATATGGAGAACA----------ACAGGA--GT-CA-CAGCATAC-----TGC-AAC---------CTAATAAAAAAGGGGGCAgtaaagagttttgaaat------gtgtAAGA----AAGAAT----------------ACAGTTTGGAga---acagggatt----t-------------tttttaggtACTTACAGATACGCCATAGACTGAATGGGA i oryLat2.scaffold949 C 0 I 6 s gadMor1.HE567998 1121241 187 - 2256342 GCAAGCAATTCAGAATTTCTTCCTGCTAGATTG--GA-CA-GGT-GCTt-----tg--aaa-----------gatggagggagaggggcataGTAGTCTTGGACCATATG-TTTGAAGG----AAGTGT-TTTGAAGTCATTTGAACAGCTTAAAGAGAAATATGAGTT----ATCAACCCGAGACTTTTACAGATATTTACAATTAAGACAC-TATTTAC----- i gadMor1.HE567998 C 0 I 5 s danRer7.chr14 39938270 147 - 53733891 TAAATGCATTCATACCAT-------CAGTATTA--GA-TATTAG-ATTT-----TA--AAAAATGGTCAAATAATGGACTAAATTACGTATATAAGCT-------------TATCAACA----AAAACTATTTAAAATCATTTGAACAATTAGTAGAAGAA-------------------------------ATACAATTACCAAGAACAGAT------------- i danRer7.chr14 C 0 I 2 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 34814 52 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-102224.000000 s mm10.chr1_GL456221_random 154356 30 + 206961 ct--cca-aagt------------ttct----gcaaggcaa---aagacacc s monDom5.chr1 156864612 30 + 748055161 TT--AAA-AAGC------------TTTT----GTACAAACC---AAACCAAT i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260273 32 - 270121 ttaaaaa-aaac------------tttt----atacaaaca---aaactgat i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 1737 30 + 2168 CT--GAG-AAGT------------TTTT----GCACAACCA---AACCCAAT i ornAna1.Contig116551 C 0 C 0 s anoCar2.chrUn_GL343225 2332149 16 - 2387735 ta--aaa-ga------------------------------a---aaattTAC i anoCar2.chrUn_GL343225 C 0 I 12 s chrPic1.JH584444 2207370 26 - 6443626 CC--AGG-CA----------------CT----ATGTTTCTC---AACTTTCT i chrPic1.JH584444 C 0 I 9 s xenTro3.GL172702 1194929 26 + 3338395 TT--AAA-AAAC-----------ATACC----AGACCAACA---AAC----- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 362096 44 + 495207 TA--AGG-AGTTGCCTAACAAAGGTTCTTGGAATAGGAgta---aacaca-- i latCha1.JH128317 C 0 I 1 s tetNig2.chrUn_random 38554038 30 - 107808587 ---CTGCAAAGC------------TTCT----GCAAGGCAA---AAGACACC i tetNig2.chrUn_random N 0 C 0 s oreNil2.GL831313-1 186317 29 + 1571857 ---CTTC-AGGT------------TTCT----TCAAATGAG---GGGTTATT i oreNil2.GL831313-1 I 8 C 0 s oryLat2.scaffold949 56611 32 - 66997 ---CTGA-GGGA------------TCAG----GAAAATTAGACAATGACATA i oryLat2.scaffold949 I 6 C 0 s gadMor1.HE567998 1121433 29 - 2256342 ---CACC-GGGA------------TTGG----GAAAAGCTC---TGCTCACC i gadMor1.HE567998 I 5 C 0 s danRer7.chr14 39938419 29 - 53733891 ---CTAC-AGAT------------ATTT----ACAAGTAAG---AGATTTTC i danRer7.chr14 I 2 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e sorAra1.scaffold_221719 34814 52 + 35690 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-34283.000000 s mm10.chr1_GL456221_random 154386 3 + 206961 gtc-- s sorAra1.scaffold_221719 34866 3 + 35690 GGC-- i sorAra1.scaffold_221719 I 52 N 0 s monDom5.chr1 156864642 2 + 748055161 -GT-- i monDom5.chr1 C 0 I 1 s sarHar1.chr2_GL842197_random 260305 2 - 270121 -gc-- i sarHar1.chr2_GL842197_random C 0 I 1 s ornAna1.Contig116551 1767 2 + 2168 -GC-- i ornAna1.Contig116551 C 0 I 1 s chrPic1.JH584444 2207405 2 - 6443626 -GT-- i chrPic1.JH584444 I 9 I 12 s xenTro3.GL172702 1194955 2 + 3338395 TG--- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 362141 2 + 495207 gg--- i latCha1.JH128317 I 1 C 0 s tetNig2.chrUn_random 38554068 3 - 107808587 --GTC i tetNig2.chrUn_random C 0 C 0 s oreNil2.GL831313-1 186346 3 + 1571857 --TTA i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 56643 3 - 66997 --CTG i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121462 3 - 2256342 --ACC i gadMor1.HE567998 C 0 C 0 s danRer7.chr14 39938448 3 - 53733891 --TTA i danRer7.chr14 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e anoCar2.chrUn_GL343225 2332165 12 - 2387735 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-126301.000000 s mm10.chr1_GL456221_random 154389 41 + 206961 aataagaca-------aaaagaccaccaac---------ag-attggg-aaaggatct--t s monDom5.chr1 156864645 42 + 748055161 ACTAAAATC-------AGAAGGAAAACAAC---------AA-ATTGGGAAAAAAATCT--T i monDom5.chr1 I 1 C 0 s sarHar1.chr2_GL842197_random 260308 41 - 270121 gacaagatt-------agaagggaagcaat---------aa-attggg-aaaacatct--t i sarHar1.chr2_GL842197_random I 1 C 0 s ornAna1.Contig116551 1770 41 + 2168 ACCAAAATC-------TGGAGGGATGTAGT---------AA-ATTGGG-AAAGAATTT--T i ornAna1.Contig116551 I 1 C 0 s anoCar2.chrUn_GL343225 2332177 42 - 2387735 TTTAGGATT-------CGCAGAGAAGGAAA---------Cgttttggg-acaaaataa--t i anoCar2.chrUn_GL343225 I 12 C 0 s chrPic1.JH584444 2207419 33 - 6443626 GCTA--ACT-------TTAATAGAAGTGAT---------GGTGTCTGG-TCa--------- i chrPic1.JH584444 I 12 C 0 s xenTro3.GL172702 1194957 31 + 3338395 AATATGAAA-------AGTGGTGCTTCAAC---------AA-AGCAGG------------- i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 362143 41 + 495207 --gaaaaaa-------caaagtttatgtAT---------AT-GTTAGA-TCAAATTAAAGG i latCha1.JH128317 C 0 C 0 s tetNig2.chrUn_random 38554071 41 - 107808587 AATAAGACA-------AAAAGACCACCAAC---------AG-ATTGGG-AAAGGATCtt-- i tetNig2.chrUn_random C 0 N 0 s oreNil2.GL831313-1 186349 48 + 1571857 ACAAACATT-------GCAATATCCCAAACCCAAAT--ACG-GTTGAG-TCAGAAATTT-- i oreNil2.GL831313-1 C 0 I 25 s oryLat2.scaffold949 56646 20 - 66997 AAAGTGTTT-------ATAACAGCCTA---------------------------------- i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121465 46 - 2256342 ATCCAAAAT-------AGAACACTTTT---TCATATCGACA-ATTGAA-GGAACGGTC--- i gadMor1.HE567998 C 0 C 0 s danRer7.chr14 39938451 26 - 53733891 CAAAACAAAGAATGGGAGAATATCAT----------------------------------- i danRer7.chr14 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-309404.000000 s mm10.chr1_GL456221_random 154430 355 + 206961 tacctatcctaa----atca----------------gataggggactaatatccaacatatata-aagaactcaag------aa-----ggtggacttcagaaaatcaaataacccc---attaa----aaaa----tggg---------------------------------gctcagaactgaacaaagaattctcacct------------g------------aggaataccgaatggcagagaagcacctga-----aaaaatgttcaacatccttaatca---tcagggaaatgcaaatcaaaacaaccctgagattccacctcacaccagtcagaatggctaagttcaaaaattca-------ggtg----acagcagatgctggcgtggattt-ggagaaag---aggaa---cactcctccattgttggtgggattgcag--gcttgtacaacc-actctggaaat-cagtctgg s monDom5.chr1 156864687 352 + 748055161 CAT-------AAAAACCTCT----------------GACAAAGGTttaattactcaaatttata-aagagctaaat------ca-----attgta---caaaaaatcaaaccattccctaattga----taaa----tggg---------------------------------caagggacatggataggcagttttcagat------------a------------aagaaatcaaaactattaataagcacatga-----agaagtgttctaaatttattataa---tcagagagatgcaaatcaaaacaactctgaggtatcacctcacacctagcagattggctaacatgacagcaatg-------gaac----ataatgaatgctggaggggatgt-ggcaaagt---gggga---cattaattcattgctggtggagttgtga--actgatccaacc-attctggaggg-caatttgg i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260349 347 - 270121 tac-------gg----ttct----------------gat-aaggcctcatttctaaaatatata-gagaactgatt------ca-----aattta---taaaaaatgaagccattctccaattga----taaa----tggt---------------------------------caaaggatatgaacagacaatttttagat------------g------------atgaaattaaaacaatttctactcatatga-----aaaggtgttccaaatcattattga---tcagagaaatgtaaattaagatcactctgagataccactacatacctgtcagattggctaagatgacagaaaaa-------gtta----gtgatgaatgttggagggaatgt-ggggaaac---tggga---cactaatgcattgttggtggcattgtca--attgatccaacc-attttggagag-aaatttcg i sarHar1.chr2_GL842197_random C 0 C 0 s ornAna1.Contig116551 1811 355 + 2168 TAC-------AG----CTAAGCTTGGG---------GATAAAGGCCTCATTtctagaatatatg-gagaactgact------ca-----aatgta---taatcatacaagtcattccccaattga----taaa----tggt---------------------------------taaagaatatgaacaggcaattttgagaa------------g------------aagaaattaaagatatctataatcatatga-----aaaaatgctctaaatcattattga---ttagagagatgcaaatcaaaacaactctgaggtaccacatcacacctataagattggcaaacatgacaga-aca-------gaaa----atgataaatgctgaagaggatatgggagaagg---tggaa---cactactca--tgttggtggagctgtga--gctcatccaaccaattctggagagccaatttgg i ornAna1.Contig116551 C 0 n 0 s anoCar2.chrUn_GL343225 2332219 352 - 2387735 gac-------------atca----------------ggaaagaaaataataaccaAGATTTACA-AAAAACTATTG------GA-----GTGGGACA-Cagaaaaggaaagtacaaagaaataccaagaaaaa----tggt---------------------------------ctaaaaatataggaagagaaataagaaaa------------g------------aggaatgggaggaaatttggaga---aaga-----aaatgaaatatacagGTGCAACTgacttaaaggaaaactggaTAAAGATGGCACACAGATGGTACTGGACGCCAA----------AGAAattaggaaaatgttacaaaaata----taaatacgAAATGGTGGAAatgt-ggagaaagagaaggat---cgctattccacatgtggtggacatgtaaggaAGCGGAAAA---ATACTGGGGGG-AAATGAGA i anoCar2.chrUn_GL343225 C 0 I 4 s chrPic1.JH584444 2207452 326 - 6443626 ----------------atta----------------ggaaacaaaaaaattgtaaCTAGCTGAT-ATAAATCTttg----------------------caaacaaaaaaagtgtCCATATATGAC----ACAC----TGGA---------------------------------AGAAGGTTGTGGCTAGACAAATTAGCCCA------------A------------ACGAATCGAGTTTGACCTGGAAG---AGGACCAGCAACCTCAGTCTGTAGCTCTA-------TAAAAGAAAATTTCTTTAAGATATTATTTCAATGATACTTCACACCAGTCA-----TTAAAAATAGAGAGACTG-------GATG----GGGATAAATGTTGGAGAAATTGT-GATGAAAG---AGGAT---ATTTTATTCATACATGGTGGACATGTCC--AATCATTAGA---GTATTGGGATG-CTATCCAT i chrPic1.JH584444 C 0 I 4 s xenTro3.GL172702 1194988 340 + 3338395 --C-------------AACA----------------AGAAAGGAC----TATCAAAAATATACC-GAACACTACTATCCCACAA-----AAGTGA---TGGAAAACCAAACCAT------ATCCA----AAAG----TGGG---------------------------------AAAAAGACCTTAATACAACATTCACTCAA------------GCACAGTGGCTCCAAGCAGCTAACGCAGCCT-----------------ACAAATACTCCAAATGTACCAATC---ACATAGAAAACCAAAGAAAAATCCTATACAGATGGTACAAAACACCCTCAATCCTCCACCAGATATACCCAACG-------TCTT----TCCCAAACTGCTGGAGATGCAAC-ACTGAAAA---AGGGA---CACTTATACACATTTGGTGGGAATGCCC--CATCCTTGCTCC-CTTCTGGACAG-AAGTCTCG i xenTro3.GL172702 C 0 I 1 s latCha1.JH128317 362184 340 + 495207 TAC-------AG----CCCA----------------TACAG--------CAttgaaaatataca-attttttaata------GATG---GACTTA---CGCTAAATGCAAAGAC------ATTAC----AAAATATTTGGT---------------------------------GCAGGGACCTTAAGATGGAATTAAATGAA------------G------------AGGAATGGCTCACATTAATGAAAGGGATGT-----ATAAGCCTTTGAGAGAAGCAAAAC---TAAgactaatgcaatttaaaataattaataagaTTTACTGGACGCCGGCCAAAATGTTTATTGTCAAATTAAGG-------AACA----CCAAAACATGCTGGAGTTGTAAC-AGGGAGGT---TGGGG---ATTTAATTCATATGTTTTGGAACTGCAA--TCAGGttaaaat-attttggaaaa-aagtgtta i latCha1.JH128317 C 0 C 0 s oreNil2.GL831313-1 186422 340 + 1571857 -----------------------TAGTTCTCTGA------GAAAGGCAATCTCCAAACTATATG-ATGTGCTCCTT------CAAGCAAGGAAGG---ATACTACTCAAAATGTT-----AAGAT----TAAA----TGGG---------------------------------AATTGGAATCGGGGATCAGTATAACAAAT------------G------------AGAACTGGGAGaggatttttaattttcatt-----ggtACTCAACAAGTTCTTTATCTT---GGAGAGACCACTGTTGGAAGAATATTATTAGATTTTTCAAAACCCCTc--atcaaattaaatataaaaatggga---------------CAGCGGAatgctggagaagatgt-ggatcAGA---AGAGGCACATCATTATCATATCTTTTGGGACTGCCC--CAACTTAAAAAA-TTACTGGCTGG-GAATT--- i oreNil2.GL831313-1 I 25 C 0 s oryLat2.scaffold949 56666 346 - 66997 -----------------------TACTTCTGGGAGCGAACGAAGAATAATATCCAAACTGTACA-AGGGCCTACAG------GAttccagacaca---caaacactcaataTGTT-----AAGTG----TAAA----TGGG---------------------------------AACGTGAAGGAAGATTGCATATCACTGAG------------G------------AAGAATGGGAAAATATCTGTCAATCCCAAT-----GGAGAACCACTCATTCACATAGTT---GTAGGGAATTTGGATGGAAAAGCATCAACAGATTCTTCATCACCCCCA--CACAAAAGAGACATCAAGGTGTTG---------------GTACAAGCTGTTGGAGGTTATGT-GGCTCATC---TGAAGCCAACCACTACCATATATTCTGGGATTGTCC--TGTACTCACATC-CTTTTGGCAAG-AAATC--- i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121511 333 - 2256342 ------------------------------------AAAGCAAGGTTCATATCACATTTATACA-GGATATTGCAA------GAAGAACTAAAGG---AGAATAATTTGGATATT-----AAAGA----AAAA----TGGG---------------------------------AACTAGAGATGAACACAATAATTTCTGAT------------G------------AACAATGGGAAAACTCATGTGAGCAGGGAC-----ACAGAGTAACCAGTAGTCCTAACT---GGAGGGAATTTGGATGGAAGATTAAAATGAGATACTTCAGAACTC-------CATTTATAACATCTAAATGGAG-------CAATACCTCAGCACTATGTTGGAGGGGTTGT-GGCAAGGT---GGGag---accacacacatatattttggGACTGTCC--AAAGTTATCAGA-Atactggaaaa-aaata--- i gadMor1.HE567998 C 0 C 0 s danRer7.chr14 39938477 390 - 53733891 -----------------------TAATCCAAATGAAATAGAGAAGTTAATGATAAAAATACAGATAAGGACTACT--------------GGTAAG---Caaataatttttaaatt-----atata----aaaG----TCTGCTACCATATCGTCCATATTATACTTTTGCATATAAAGAACGATAGGAGGCAGAAAGGCAGGTAAAGATTACACAG------------AAAACTAGATTGATATATGCTCAAAAGCCC-----ATAGAGTCACAAAGTCAAATGtat---ggagagaatttaagtgaaaaatcattacaagatatttctgcaccccacaaattgtagcaaagataagaataggc-------ccat----ctaatagatgctgaagagaatgt-ggtgataa---tttagggaaccactctcatatctttcggtattgccc--aaaactgcagca-attttggaatg-atTTC--- i danRer7.chr14 C 0 C 0 e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-86209.000000 s mm10.chr1_GL456221_random 154785 44 + 206961 cggt-tcctcagaaa-attg-g---acatagtac-taccAgaggatccagc------ s monDom5.chr1 156865039 47 + 748055161 aactatgcccaaagg-gcgaca---aaagaatgtctaccctttgatccagc------ i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260696 47 - 270121 aactatactcaaaaa-attttC---AAGCTGTGCAGATCCTTTGATCCACC------ i sarHar1.chr2_GL842197_random C 0 C 0 s anoCar2.chrUn_GL343225 2332575 43 - 2387735 GACTA----CAAGAA-ATGCTA---GAAATAAGAATACCATTAAAACCAGA------ i anoCar2.chrUn_GL343225 I 4 C 0 s chrPic1.JH584444 2207782 34 - 6443626 AAATAT---CACTCG-TTGttg---gatat----------ttattaccaaa------ i chrPic1.JH584444 I 4 I 22 s xenTro3.GL172702 1195329 46 + 3338395 AACTACTA-TACGAT-ACAATG---AATCTACACATCCCACTAACTGCACC------ i xenTro3.GL172702 I 1 C 0 s latCha1.JH128317 362524 47 + 495207 aagtttTGCAGTAAA-GTTTTG---GATAAAGAGATACCAGTGGATGAGGG------ i latCha1.JH128317 C 0 C 0 s oreNil2.GL831313-1 186762 39 + 1571857 ---------CATAAA-ACTCTGTGCGAGGT--------TTTTAAGATAAAATTTGAC i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 57012 40 - 66997 ---------CATAAA-TGTTTG---GAGACAACA----TTTCAAGAAACCTTTCCCC i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121844 38 - 2256342 ---------caaaag----------gaaataaaaatatgtttatttattgactCACC i gadMor1.HE567998 C 0 C 0 s danRer7.chr14 39938867 40 - 53733891 ---------TATAAGGTACTTG---GAGACATA-----TTTTGTATTGATATTCCCT i danRer7.chr14 C 0 N 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-143780.000000 s mm10.chr1_GL456221_random 154829 108 + 206961 aatacctctcctgggcatatatccagaagat---------gccccaactggtaag--------------------aaggacacatgctc----cactatgttcatagcagccttatttataa-------tagccagaagc--------tggaaaga s monDom5.chr1 156865086 102 + 748055161 catagcactgctgggtttgtaccccaaagag---------a---taatggac-----------------------aaaaagacttgtat----aaaaatattcatagctgcactctttctgg-------tggccaaaaac--------tggaaaac i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260743 110 - 270121 AATgctactgctgggcttatattccaaaaag---------a---tatttaataag------------------ggaaagggtcctgtatgtgcaaaaatgtttgtggcagccctttttgtag--------ggcaagaaac--------tggaaaat i sarHar1.chr2_GL842197_random C 0 C 0 s anoCar2.chrUn_GL343225 2332618 108 - 2387735 GATCTTCCTATTAGGAATAACTGatcaaaaaatt------g---aaaaaaataa---------------------agataaacttcTAT---------TCCTAATGACCACAGCAGCAAGGATATGCT-TTGCAAAGAGA--------TGGAAAGG i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584444 2207838 96 - 6443626 GGGCTTCCTAGTGGAAATGGCCACACAAAAG---------G---AAGTGAAT--------------------------TGATCTCTTAT--------CTGCTACTAGCTGCTTGGCTATTGGTAGACTCTCgctg--------------ggaaaag i chrPic1.JH584444 I 22 C 0 s xenTro3.GL172702 1195375 108 + 3338395 ATTAGCACTCCTTAACCACGGGATCCAGGAC---------C---TACCCCAAGAC------------------CTACAAAAACTCACGT---TCCACATCATAACCTCAGCCAGATTACTAA-------TTCCCAGACTC--------TGGAAAAC i xenTro3.GL172702 C 0 C 0 s latCha1.JH128317 362571 120 + 495207 TTTATGCCTCTTACATAAAAACCCTTGAGAGAGTGACTCAA---ATATACATAA---------------------GGATAAATTTTCTT---GGCTAATCTTAGCAATAGCCACAGCAAAAA-AGGTGATTTGCAGACAT--------TGGAAAGA i latCha1.JH128317 C 0 N 0 s oreNil2.GL831313-1 186801 119 + 1571857 ---ATCAATTTTGTAAATTTGTACTTGGGCT---------T---GGTTGCTGGCTTGGTCCGGGGAGGG----GACACAAAACTCTTAC---AAGCGCTATTAGCGGCCAGCAAAAAATCAA-------TAACCAGAAAG--------TGGTTAAA i oreNil2.GL831313-1 C 0 C 0 s oryLat2.scaffold949 57052 90 - 66997 ---TTTAATGCATTAGCTCTATACATGGGAA---------C---AGT----------------------------AACAGAACACAT----------------GCAGTCTGCAGCAGACCAA-------TATTTAATGAGAATATTGCTGGTGAGA i oryLat2.scaffold949 C 0 C 0 s gadMor1.HE567998 1121882 123 - 2256342 ---ATTAGAACCATCACACTTCATTTTAGGG---------A---TATTGCCTGATAACCTTGAAGAAAACAACCAAACTAAAATTTTGA---GAGCCCTTCTTCTAATAGCAAATAAAGCAA-------TAAC-----AG---CCTCCTGGCTGAA i gadMor1.HE567998 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-20945.000000 s mm10.chr1_GL456221_random 154937 34 + 206961 acccagatgcccctcaacaga-----ggaatggatacag s monDom5.chr1 156865188 34 + 748055161 aagaggatgcccatcaatcgg-----ggaatggctgagc i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260853 34 - 270121 gaatggatggccatcaattgg-----agaatggctgagt i sarHar1.chr2_GL842197_random C 0 C 0 s anoCar2.chrUn_GL343225 2332726 34 - 2387735 AAAACGAATTCCAGAAGagga-----agaatggataata i anoCar2.chrUn_GL343225 C 0 C 0 s chrPic1.JH584444 2207934 32 - 6443626 aaaaataatccaacCATTG-------AGAAGGGTTTCAA i chrPic1.JH584444 C 0 C 0 s xenTro3.GL172702 1195483 31 + 3338395 AAGCACAATTC---CAACCAA-----AGAAGACCTAATC i xenTro3.GL172702 C 0 C 0 s oreNil2.GL831313-1 186920 30 + 1571857 TCCAACTCCGCCAACACTTGA-----GGATTGGTT---- i oreNil2.GL831313-1 C 0 I 6 s oryLat2.scaffold949 57142 33 - 66997 GGGAAGAAGGCCTTGACAAGA------AAGTGGTTACAG i oryLat2.scaffold949 C 0 N 0 s gadMor1.HE567998 1122005 34 - 2256342 GCCACAGCCCCCCACAATAACCCAATGGAGGGAT----- i gadMor1.HE567998 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=2326.000000 s mm10.chr1_GL456221_random 154971 5 + 206961 aaaat s monDom5.chr1 156865222 5 + 748055161 aaatt i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260887 5 - 270121 aaatt i sarHar1.chr2_GL842197_random C 0 C 0 s anoCar2.chrUn_GL343225 2332760 5 - 2387735 agaat i anoCar2.chrUn_GL343225 C 0 N 0 s chrPic1.JH584444 2207966 5 - 6443626 AAAAT i chrPic1.JH584444 C 0 C 0 s xenTro3.GL172702 1195514 5 + 3338395 TACCT i xenTro3.GL172702 C 0 I 4 s oreNil2.GL831313-1 186956 5 + 1571857 ggttt i oreNil2.GL831313-1 I 6 C 0 s gadMor1.HE567998 1122039 5 - 2256342 AGAAT i gadMor1.HE567998 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-4570.000000 s mm10.chr1_GL456221_random 154976 2 + 206961 gt- s monDom5.chr1 156865227 2 + 748055161 gt- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260892 2 - 270121 gt- i sarHar1.chr2_GL842197_random C 0 C 0 s chrPic1.JH584444 2207971 2 - 6443626 AT- i chrPic1.JH584444 C 0 N 0 s xenTro3.GL172702 1195523 1 + 3338395 G-- i xenTro3.GL172702 I 4 I 10 s oreNil2.GL831313-1 186961 2 + 1571857 -tt i oreNil2.GL831313-1 C 0 C 0 s gadMor1.HE567998 1122044 2 - 2256342 -TC i gadMor1.HE567998 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-4372.000000 s mm10.chr1_GL456221_random 154978 71 + 206961 ggtacatctatacaatggagtact--actcagctattaaaaagaatgaat--ttatgaaattcctagccaaatgg s monDom5.chr1 156865229 71 + 748055161 ggtatatgttggtgatggaatact--attgtgctaaaaggaataataaag--tggaggaattccatggagactgg i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260894 69 - 270121 ggtatatgaatgttatgcaat--t--attgttctgtaagaaatgaccagc--aggatgaatacagaaaggcttgg i sarHar1.chr2_GL842197_random C 0 C 0 s xenTro3.GL172702 1195534 71 + 3338395 CACCTATGAGCAACACGCAGCACA--AC--AACTATCGAAAACAACAAATAAAGACAAAATAACTCAACAAATAT i xenTro3.GL172702 I 10 C 0 s oreNil2.GL831313-1 186963 69 + 1571857 gaaatatttaaag--tggaaaaattgacattctttttaaaaat--tcaaa--aagacaaattctacaaaatatgg i oreNil2.GL831313-1 C 0 I 9 s gadMor1.HE567998 1122046 71 - 2256342 AAGATATGTACAGGATGGAACACTTGACTGCACTATTACAACT--TAAAA--CAGAGGCATTCATAAACAACTGG i gadMor1.HE567998 C 0 N 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-1580.000000 s mm10.chr1_GL456221_random 155049 22 + 206961 atgg-acctggagggcatcatcc s monDom5.chr1 156865300 22 + 748055161 aatg-acctctaggaagtgatgc i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260963 22 - 270121 agag-acttgtatgaactgatgc i sarHar1.chr2_GL842197_random C 0 C 0 s xenTro3.GL172702 1195605 23 + 3338395 GGCGCACTTGGACTAAAAAACAC i xenTro3.GL172702 C 0 C 0 s oreNil2.GL831313-1 187041 22 + 1571857 ATTA-GCTTTGTGTCCCCCACCC i oreNil2.GL831313-1 I 9 N 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-2481.000000 s mm10.chr1_GL456221_random 155071 36 + 206961 tgagtga-----------ggt-aacacattcagaaaggaact--------cacaca s monDom5.chr1 156865322 31 + 748055161 agagcga-----------gaggagcagaaccaggaaaacatt-------------- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 260985 31 - 270121 taagtga-----------aatgagcagaatcaggagataatt-------------- i sarHar1.chr2_GL842197_random C 0 C 0 s xenTro3.GL172702 1195628 56 + 3338395 ACAAGCATCACCTAACCCAACAATCAAAATCAACAAGAGACCTGGAACTACACACA i xenTro3.GL172702 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=1029.000000 s mm10.chr1_GL456221_random 155107 3 + 206961 ata s monDom5.chr1 156865353 3 + 748055161 gta i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 261016 3 - 270121 ata i sarHar1.chr2_GL842197_random C 0 C 0 s xenTro3.GL172702 1195684 3 + 3338395 ACA i xenTro3.GL172702 C 0 N 0 s latCha1.JH126757 845546 3 + 2029030 AAA i latCha1.JH126757 N 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-6182.000000 s mm10.chr1_GL456221_random 155110 30 + 206961 tgtactcactgataagt-----------------------------------------ggatattagcccc- s monDom5.chr1 156865356 71 + 748055161 cccagagactaatacactgtggtataatcgaacgtaatggacttctccattagtggcggtgtaatgtccct- i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 261019 30 - 270121 cacttAAACAACTATAT-----------------------------------------Gaatattaattct- i sarHar1.chr2_GL842197_random C 0 C 0 s latCha1.JH126757 845549 24 + 2029030 TGCAGTGACA------------------------------------------------GAGTAATCAGCCCC i latCha1.JH126757 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=19.000000 s mm10.chr1_GL456221_random 155140 2 + 206961 ----aa s monDom5.chr1 156865427 2 + 748055161 ----ga i monDom5.chr1 C 0 C 0 s sarHar1.chr2_GL842197_random 261049 2 - 270121 ----ga i sarHar1.chr2_GL842197_random C 0 N 0 s anoCar2.chr1 106088267 2 - 263920458 ----aa i anoCar2.chr1 N 0 C 0 s latCha1.JH126757 845573 6 + 2029030 GCGTCA i latCha1.JH126757 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-17322.000000 s mm10.chr1_GL456221_random 155142 70 + 206961 acctaggattcccaaga-tat---------aaggtacaatttgctaaacacat----gaaactcaagaagaat--gaagactgaag s monDom5.chr1 156865429 77 + 748055161 aca----atctgcagggatctaggagaaaaaaaacactatccataa-gcagag----gacaaactgtgggagtagaaacaccgagg i monDom5.chr1 C 0 n 0 s sarHar1.chr2_GL842730_random 39080 71 + 63128 ACATAGcatcaacaagattat---------aaaatatcaattgtgatggacat----ggctattTTCAAAAAT--GATGATTGAGG i sarHar1.chr2_GL842730_random N 0 C 0 s anoCar2.chr1 106088269 53 - 263920458 ---------------------------aaatagatgataaaggaaaaggaaag----ataaaatataaaaaaa--gagaaaggaag i anoCar2.chr1 C 0 I 4 s latCha1.JH126757 845579 55 + 2029030 ----------------------------GCACAGCGTTACTGATAACGCAGTTTCCAGTAACGCAGCacgtca--aagggccaaa- i latCha1.JH126757 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-8009.000000 s mm10.chr1_GL456221_random 155212 85 + 206961 tgtggacactatgcccctctttagatttgggaaccaaacacccatggaaggagtta-----cagagacaaagtttggagctgagatgaaa s sarHar1.chr2_GL842730_random 39151 84 + 63128 C-CAGTCCCAATAATcctgtgatgaaaagagccatttatactgagagagaggattg-----tgggaaccaagtgtggatccaatataaca i sarHar1.chr2_GL842730_random C 0 N 0 s anoCar2.chr1 106088326 75 - 263920458 ---------------cttcaacagaaaggagaaggaaataagaagaaaaggagttaaaatttaaggagaaattaaggaagaaagaaaagg i anoCar2.chr1 I 4 C 0 s latCha1.JH126757 845634 62 + 2029030 ---agtgggcattcccttcatctacatagggaa-cacgtatcaccagcaaaagttg--------aagcaatgtt---------------- i latCha1.JH126757 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 156865506 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=1686.000000 s mm10.chr1_GL456221_random 155297 23 + 206961 ggatggaccatgtagagactgcc s anoCar2.chr1 106088401 23 - 263920458 caaagtaccttgaagaaactgcc i anoCar2.chr1 C 0 N 0 s latCha1.JH126757 845696 18 + 2029030 -----aaccatgttaatactgca i latCha1.JH126757 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 156865506 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=-986.000000 s mm10.chr1_GL456221_random 155320 229 + 206961 atatccagggatccaccccataatcagcatccaaacgctgacaccattgcatacactagcaagattttattgaaaggacccagatgtagctgtctcttgtgagactatgtcggggcctagca-aacacaaaagtggatgctcacagtcagctaatggatggatcatagggctcccaatggaggagctagaga---------aagtagccaaggagc--------taaagggatctgcacccctatag s latCha1.JH126757 845714 213 + 2029030 ttaaaagggcagccagc------ttcacagctttacttccaccccggggtaga----agtaaaagttgcttaagag--------tgtagtag------gagccacaaattcaaaaagtaaaacaaaataaaaagggaagct-gcag---------ggagggagaagcagccccccagtggggggggcacagacccctccccagacaactctggagcagtatggatggatggatctgtatttatatag i latCha1.JH126757 C 0 N 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 156865506 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456221_random 155549 137 + 206961 atggaacaacattatgaactaaccagtaccccggagctcttgactctagctacatatatatcaaaagatggcctagtcggccatcactggaaagagaggcccattggacttgcaaactttatatgccccagtacagg e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 156865506 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=480.000000 s mm10.chr1_GL456221_random 155686 144 + 206961 ggaacaccagggccaaaaagggggagtgggtgggcagggga---------------------gtggaggtgggtggatatgggggacttttggtatagcattggaaatgtaaatgagctaaatacctaataaaaaatggaaaaaaaaaAAaggccgatggaggaa s monDom5.chr1 618461353 160 + 748055161 GGAACATCAAAGGAATTCAAGGGGAATAAATAGGCTATTGATAAAGTTAATCTAGACTGCATAGGAAAGAAAGTGAAGACAAAAAATAGCTTGTATA---TTAGAAAAGTTAATA--CCAAGTCCTAATGAGGGTAAAGAAAAAAAGAATAAGAGAAGTAAGGGG i monDom5.chr1 n 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394502 0 + 121549591 C a score=3884.000000 s mm10.chr1_GL456221_random 155830 102 + 206961 gaatgtcttgtgttcaaagccttcctggtatgagactttatctcaaaaaagaaa-------aaGAGATTTGGAAGTGGATTTTCTTTTTGGTT----TAAGATCTAGAATGTG s rn5.chr9 92394502 78 + 121549591 gagtgtattaagttcaaagcctgcctagtatgagacattatctcaaaaaagaaa-------caaaaACTTGGAAGTGAATTTTTT---------------------------- i rn5.chr9 C 0 C 0 s monDom5.chr1 618461513 100 + 748055161 GAAGG----GTATGCAGAA-------GGCAGGGGA--TTGACTCAAGAGAGGAATTTCAGTTTGGGATTTAGAAGTAGAATTTCTTTTAAGTCTTAGTAAGGTCTGAATTGTG i monDom5.chr1 C 0 n 0 e ornAna1.Contig116551 2166 0 + 2168 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=8125.000000 s mm10.chr1_GL456221_random 155932 189 + 206961 TTTCACTAACAGGAAGGTTCCCAGCACAAGAGACCTAACTTCTTTCCTGGTCTACAAAGCTATTGGGCCACAAAGAGGAAAATTAAGCCAACACCCCCAacacacacacacacacacacacacacacacacacacacacacacacacacaGGAGAATAATTTTTAA--AATATATGTATGTCAAAGGTggg s rn5.chr9 92394580 133 + 121549591 --------------------------------------------------------AAGTTAGTGGGCCACA--GAGGAAAATTAAGCCAATACCCCCAacacacacgcacacacgcacacacacacacacacacacacacacacacacacGAGAATAATTTAAAAAGAGTATATGTATGTCAAATGTGGG i rn5.chr9 C 0 I 174 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=0.000000 s mm10.chr1_GL456221_random 156121 135 + 206961 catggtggcacaggattttaaacccagcatatgggaggcagatgtaggcagatctctgagtctgaggctagcccagtctatatatagagcaagttcaaggatatccaggactacacagagaaatcctatctggaa e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92394713 174 + 121549591 I a score=9017.000000 s mm10.chr1_GL456221_random 156256 164 + 206961 CCCCCCCCCCgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtTTGGGGGAAGACACAGTGTGTGTGCATTTGAGTGTAGAAGTCTGTGGAGTCCAGAGGCATCAGTACAGTTaattgaattgggtctttagcaagagtacta s rn5.chr9 92394887 149 + 121549591 ctctctctctctctctctctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt---------------gtgtgtgtgcatgtgagtgtAGATGCCTATGGAGCCCGGAGGCTTCAGTAAAGTgaattgaattgggtcttttgcaagagtacta i rn5.chr9 I 174 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=5580.000000 s mm10.chr1_GL456221_random 156420 176 + 206961 tatgctcttaatcaccactccatctctctagatccTAGCTTAAATCTTtgtgtgagtatatgaatatatgtgatgtgtatgtactcatgagtgtgtgcatgtttat-gtgagaattcagatgtgtgtgt----CATAATATTCACGA---AAGTCAAAGTAGAGGGCAACCATGTGTGTTTTTT s rn5.chr9 92395036 171 + 121549591 tatgttcttaatcactgctccctctttctagatccTAGCTTAAAACTTTGTGCATGCATGTATATAGATATG-TGTG-ATGTACTCATGAGTACATGCATGTTTTTTGTGTGAATCCAGATGAGTGTGTATATTATAATATTCTCAA---GAATCACGGTAGAGGGGTGTCAT--------TTT i rn5.chr9 C 0 C 0 s anoCar2.chr2 138766266 146 + 199619895 tagtctctaaggagCTACAAAATCTCTTTGCATACTAA--TGCTGCTCTGTCTTTGAATTCTAAAAGA---GTTGTAATTATAATCAT-------------TTTAT--------------------TGCACATCTGAAAATTTTTAAATGAAGTCAAATTAAAGGTGAAACGTGTGTGTTTGTT i anoCar2.chr2 N 0 N 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=5527.000000 s mm10.chr1_GL456221_random 156596 105 + 206961 TTCCATCTCAGCTTCTTTGAGACAAGGCAACTGTCGACCAGAGTGGAGTGC-------------------------ATGTAGCtttccacaggcttgaggggatctgaactcaagtcctctcacttgtgt s rn5.chr9 92395207 129 + 121549591 TTACATTTCAGCTTGTTTGAGACAAAGCATCTATTAACCACAGTGGagtgctgggattacagacacatgctaccacatgcacctttccacagatttt-ggggatctcagctcaggtcctctcacttgtgt i rn5.chr9 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4177741 271 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=712.000000 s mm10.chr1_GL456221_random 156701 41 + 206961 ggcaaacactgacccactgaggcaa-----ctccccagccc-----GAGA--------------------T s rn5.chr9 92395336 51 + 121549591 ggcaaacactgacccactgaggtcagttatctcctcagccT-----GATGAT---------------TTTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178012 66 - 10418462 ggcgtgcactctatcactgagccac-----aaccccagcccAGAAAGAGAATTTATATTCAAGTCAGTTTG i speTri2.JH393335 I 271 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122723905 201 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94109814 201 + 106825570 I e equCab2.chr6 17890217 193 + 84719076 I e nomLeu2.GL397366 3695462 201 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=4011.000000 s mm10.chr1_GL456221_random 156742 2 + 206961 TG s rn5.chr9 92395387 2 + 121549591 TG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178078 2 - 10418462 TG i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122724106 2 + 135000294 TG i ponAbe2.chr2b I 201 C 0 s nomLeu2.GL397366 3695663 2 + 6458163 TG i nomLeu2.GL397366 I 201 C 0 s rheMac3.chr12 94110015 2 + 106825570 TG i rheMac3.chr12 I 201 C 0 s equCab2.chr6 17890410 2 + 84719076 TG i equCab2.chr6 I 193 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526038 195 + 51628933 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=23101.000000 s mm10.chr1_GL456221_random 156744 15 + 206961 CTTCTTA-CTCCCCGT s rn5.chr9 92395389 15 + 121549591 CTTCTTA-CTCCCCCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178080 16 - 10418462 CTTCTTATCTTCCGCC i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122724108 16 + 135000294 CTTCTTATCTGCACCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695665 16 + 6458163 CTTCTTATCTGCGCCC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110017 16 + 106825570 CTTCTTATCTGCCCCC i rheMac3.chr12 C 0 C 0 s canFam3.chr25 42526233 16 + 51628933 CTTCTTATCTTTCCCT i canFam3.chr25 I 195 C 0 s equCab2.chr6 17890412 16 + 84719076 CTTCTTATCTCTCCCC i equCab2.chr6 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e otoGar3.GL873532 28860686 740 - 32117204 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=-15857.000000 s mm10.chr1_GL456221_random 156759 5 + 206961 ----AGTC-------A s rn5.chr9 92395404 5 + 121549591 ----AGGC-------A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178096 12 - 10418462 ----AAGCTTCCTTAA i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122724124 2 + 135000294 ----AA---------- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695681 2 + 6458163 ----AA---------- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110033 2 + 106825570 ----AA---------- i rheMac3.chr12 C 0 C 0 s canFam3.chr25 42526249 3 + 51628933 ----AG---------A i canFam3.chr25 C 0 I 12 s equCab2.chr6 17890428 3 + 84719076 ----AA---------A i equCab2.chr6 C 0 I 12 s sarHar1.chr2_GL841365_random 490197 5 - 782558 AATTA----------- i sarHar1.chr2_GL841365_random N 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e otoGar3.GL873532 28860686 740 - 32117204 I e ailMel1.GL192536.1 1082664 226 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=1432.000000 s mm10.chr1_GL456221_random 156764 4 + 206961 AGAT s rn5.chr9 92395409 4 + 121549591 GGAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178108 4 - 10418462 AACT i speTri2.JH393335 C 0 C 0 s canFam3.chr25 42526264 4 + 51628933 AACC i canFam3.chr25 I 12 C 0 s ailMel1.GL192536.1 1082890 4 - 2169676 AAAC i ailMel1.GL192536.1 I 226 C 0 s equCab2.chr6 17890443 4 + 84719076 AACT i equCab2.chr6 I 12 C 0 s sarHar1.chr2_GL841365_random 490202 4 - 782558 AAGC i sarHar1.chr2_GL841365_random C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 26896 217 + 18451090 I e ponAbe2.chr2b 122724126 0 + 135000294 C e otoGar3.GL873532 28860686 740 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110035 0 + 106825570 C e nomLeu2.GL397366 3695683 0 + 6458163 C e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=72101.000000 s mm10.chr1_GL456221_random 156768 31 + 206961 TCTCAGAAATACCA-AACTCTAAGGTCC-TTTA s rn5.chr9 92395413 31 + 121549591 TATCAGAAATACCA-AACTCTAAGGTTC-TTTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178112 31 - 10418462 TCTCAGAAATCCCA-AACTCAAGGCTCC-TATA i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122724126 32 + 135000294 TCCCAGAAATCCCA-AACTCTAGATTCCTTTTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3695683 31 + 6458163 TCCCAGAAATCCCA-AACTCCAGATTCC-TTTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110035 31 + 106825570 TCCCAGAAATCCCA-AACTCCAGATTCC-TTTG i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 27113 31 + 18451090 TCTCGGGAATCCCA-AACTCCAGATTCC-TTTG i saiBol1.JH378144 I 217 C 0 s canFam3.chr25 42526268 30 + 51628933 TTGTAGAAGCCCCA--ATTTTGGATTCC-TTTG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082894 30 - 2169676 TCTCAGAAGTCCCA--ATTTCAGATTCC-TGTG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890447 31 + 84719076 TCTCAGAAATCCCA-GACTCCAGATTCC-TTTG i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL841365_random 490206 31 - 782558 TTCCAGTTGCACCAAAACCTAAAATTAG-TCT- i sarHar1.chr2_GL841365_random C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e otoGar3.GL873532 28860686 740 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 28777 1409 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=61536.000000 s mm10.chr1_GL456221_random 156799 58 + 206961 CATGTGAATGAACCATGCACCTAATGGAGTCCCTC-----AGAGAATAGAAGTACCAAGAGGG s rn5.chr9 92395444 58 + 121549591 CCTGTGAATGAACCATGCAGCTAACAGGGTCCTTC-----AGAGAATAGAAGTACCAAGAAGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178143 61 - 10418462 TACGTTCAAGGGCCATATAGTTAACAGGGACTCCCCAGTAGAGGAATAGAAGTG--ATGAGGA i speTri2.JH393335 C 0 C 0 s ponAbe2.chr2b 122724158 58 + 135000294 CATGTGAATAGACCATAT-CCCAACAAGGATTGCCAGC--AAGGAGTAGAAGTG--ACAGAGA i ponAbe2.chr2b C 0 I 1 s nomLeu2.GL397366 3695714 58 + 6458163 CATGTGAATAGACCATAT-CCCAACAAGGACTGCCAGC--AAGGAGTAGAAGTG--ACAGAGA i nomLeu2.GL397366 C 0 I 1 s rheMac3.chr12 94110066 59 + 106825570 CATGTGAAGAGACCGTATGGTTAACACGGATTTCCAGC--AAGGAGTAGAAGTG--ACCGAGA i rheMac3.chr12 C 0 I 516 s saiBol1.JH378144 27144 59 + 18451090 CATGTGACTAGACCACATGgttaacagggattgcctgc--aaggagtagaagtg--acggaga i saiBol1.JH378144 C 0 I 1 s canFam3.chr25 42526298 57 + 51628933 CATGTGAATGGAGCGTGTAGTTTACAGGGGTCACCAGA--AAGAGCTAGAAGTG----GGGGA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082924 58 - 2169676 CATGTGAATAGAACATGTAGTTTACAGGGGTCACCAGA--GAGGAC-AGAAGTG--GTGGGGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890478 61 + 84719076 CATGTGAATGGACCCTATAGTTAACAGGGATCAGCAGA--GGGGAATAGAAGTGACACAGGAG i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 30186 43 - 513109 CATCAGAAACAACCATGCGCTC------------------TGGGAACAGAAGAT--AAGATGC i dasNov3.JH581855 I 1409 C 0 s sarHar1.chr2_GL841365_random 490237 23 - 782558 CACAGAAATGAACCTTCCATCTG---------------------------------------- i sarHar1.chr2_GL841365_random C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e otoGar3.GL873532 28860686 740 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=15003.000000 s mm10.chr1_GL456221_random 156857 4 + 206961 AGGA s rn5.chr9 92395502 4 + 121549591 AGGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178204 4 - 10418462 AGGA i speTri2.JH393335 C 0 I 262 s ponAbe2.chr2b 122724217 4 + 135000294 AGGA i ponAbe2.chr2b I 1 I 503 s nomLeu2.GL397366 3695773 4 + 6458163 AGGA i nomLeu2.GL397366 I 1 I 504 s saiBol1.JH378144 27204 4 + 18451090 agga i saiBol1.JH378144 I 1 I 1 s canFam3.chr25 42526355 4 + 51628933 AGGA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082982 4 - 2169676 AGGA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890539 4 + 84719076 AGGA i equCab2.chr6 C 0 I 253 s dasNov3.JH581855 30229 3 - 513109 -GGG i dasNov3.JH581855 C 0 I 3 e ornAna1.Contig116551 2166 0 + 2168 I e sarHar1.chr2_GL841365_random 490260 0 - 782558 C e monDom5.chr1 618461613 0 + 748055161 I e otoGar3.GL873532 28860686 740 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110125 516 + 106825570 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=-42.000000 s mm10.chr1_GL456221_random 156861 1 + 206961 T s rn5.chr9 92395506 1 + 121549591 G i rn5.chr9 C 0 C 0 s canFam3.chr25 42526359 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082986 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e sarHar1.chr2_GL841365_random 490260 0 - 782558 C e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 27208 1 + 18451090 I e ponAbe2.chr2b 122724221 503 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4178208 262 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110125 516 + 106825570 I e equCab2.chr6 17890543 253 + 84719076 I e nomLeu2.GL397366 3695777 504 + 6458163 I e gorGor3.chr2B 119511170 812 + 131632457 I e panTro4.chr2B 235554886 810 + 247518478 I e hg19.chr2 231176433 811 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 30232 3 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=-2461.000000 s mm10.chr1_GL456221_random 156862 1 + 206961 -G s rn5.chr9 92395507 1 + 121549591 -G i rn5.chr9 C 0 C 0 s hg19.chr2 231177244 1 + 243199373 -G i hg19.chr2 I 811 C 0 s panTro4.chr2B 235555696 1 + 247518478 -G i panTro4.chr2B I 810 C 0 s gorGor3.chr2B 119511982 1 + 131632457 -G i gorGor3.chr2B I 812 C 0 s saiBol1.JH378144 27209 1 + 18451090 -g i saiBol1.JH378144 I 1 C 0 s canFam3.chr25 42526360 1 + 51628933 -A i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1082987 1 - 2169676 -A i ailMel1.GL192536.1 C 0 I 267 s sarHar1.chr2_GL841365_random 490260 1 - 782558 T- i sarHar1.chr2_GL841365_random C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e ponAbe2.chr2b 122724221 503 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4178208 262 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110125 516 + 106825570 I e equCab2.chr6 17890543 253 + 84719076 I e nomLeu2.GL397366 3695777 504 + 6458163 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 30232 3 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=221.000000 s mm10.chr1_GL456221_random 156863 1 + 206961 T s rn5.chr9 92395508 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231177245 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555697 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119511983 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s saiBol1.JH378144 27210 1 + 18451090 a i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42526361 1 + 51628933 T i canFam3.chr25 C 0 C 0 s dasNov3.JH581855 30235 1 - 513109 T i dasNov3.JH581855 I 3 C 0 s sarHar1.chr2_GL841365_random 490261 1 - 782558 T i sarHar1.chr2_GL841365_random C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e ponAbe2.chr2b 122724221 503 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e ailMel1.GL192536.1 1082988 267 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4178208 262 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110125 516 + 106825570 I e equCab2.chr6 17890543 253 + 84719076 I e nomLeu2.GL397366 3695777 504 + 6458163 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=4500.000000 s mm10.chr1_GL456221_random 156864 1 + 206961 G s rn5.chr9 92395509 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231177246 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555698 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119511984 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s saiBol1.JH378144 27211 1 + 18451090 g i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42526362 1 + 51628933 G i canFam3.chr25 C 0 I 272 s equCab2.chr6 17890796 1 + 84719076 G i equCab2.chr6 I 253 C 0 s dasNov3.JH581855 30236 1 - 513109 G i dasNov3.JH581855 C 0 C 0 s sarHar1.chr2_GL841365_random 490262 1 - 782558 G i sarHar1.chr2_GL841365_random C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e ponAbe2.chr2b 122724221 503 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e ailMel1.GL192536.1 1082988 267 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4178208 262 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110125 516 + 106825570 I e nomLeu2.GL397366 3695777 504 + 6458163 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=348.000000 s mm10.chr1_GL456221_random 156865 3 + 206961 TTT- s rn5.chr9 92395510 3 + 121549591 TTT- i rn5.chr9 C 0 C 0 s hg19.chr2 231177247 3 + 243199373 TCT- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555699 3 + 247518478 TCT- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119511985 3 + 131632457 TCT- i gorGor3.chr2B C 0 C 0 s saiBol1.JH378144 27212 3 + 18451090 att- i saiBol1.JH378144 C 0 I 522 s equCab2.chr6 17890797 3 + 84719076 TAT- i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 30237 3 - 513109 TTT- i dasNov3.JH581855 C 0 I 1 s sarHar1.chr2_GL841365_random 490263 3 - 782558 -CTG i sarHar1.chr2_GL841365_random C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e ponAbe2.chr2b 122724221 503 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526363 272 + 51628933 I e ailMel1.GL192536.1 1082988 267 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4178208 262 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110125 516 + 106825570 I e nomLeu2.GL397366 3695777 504 + 6458163 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=1883.000000 s mm10.chr1_GL456221_random 156868 1 + 206961 C s rn5.chr9 92395513 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231177250 1 + 243199373 C i hg19.chr2 C 0 I 1 s panTro4.chr2B 235555702 1 + 247518478 C i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119511988 1 + 131632457 C i gorGor3.chr2B C 0 I 1 s equCab2.chr6 17890800 1 + 84719076 C i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 30241 1 - 513109 T i dasNov3.JH581855 I 1 I 2 s sarHar1.chr2_GL841365_random 490266 1 - 782558 C i sarHar1.chr2_GL841365_random C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 27215 522 + 18451090 I e ponAbe2.chr2b 122724221 503 + 135000294 I e otoGar3.GL873532 28860686 740 - 32117204 I e canFam3.chr25 42526363 272 + 51628933 I e ailMel1.GL192536.1 1082988 267 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4178208 262 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110125 516 + 106825570 I e nomLeu2.GL397366 3695777 504 + 6458163 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=3776.000000 s mm10.chr1_GL456221_random 156869 3 + 206961 TGT s rn5.chr9 92395514 3 + 121549591 TGT i rn5.chr9 C 0 C 0 s hg19.chr2 231177252 3 + 243199373 TGA i hg19.chr2 I 1 C 0 s panTro4.chr2B 235555704 3 + 247518478 TGA i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119511990 3 + 131632457 TGA i gorGor3.chr2B I 1 C 0 s ponAbe2.chr2b 122724724 3 + 135000294 TGA i ponAbe2.chr2b I 503 C 0 s nomLeu2.GL397366 3696281 3 + 6458163 TGA i nomLeu2.GL397366 I 504 C 0 s rheMac3.chr12 94110641 3 + 106825570 TGA i rheMac3.chr12 I 516 C 0 s otoGar3.GL873532 28861426 3 - 32117204 TGA i otoGar3.GL873532 I 740 C 0 s equCab2.chr6 17890801 3 + 84719076 TAA i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 30244 1 - 513109 T-- i dasNov3.JH581855 I 2 C 0 s sarHar1.chr2_GL841365_random 490267 3 - 782558 TAC i sarHar1.chr2_GL841365_random C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 27215 522 + 18451090 I e canFam3.chr25 42526363 272 + 51628933 I e ailMel1.GL192536.1 1082988 267 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4178208 262 - 10418462 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=44494.000000 s mm10.chr1_GL456221_random 156872 9 + 206961 CACTGATAA s rn5.chr9 92395517 9 + 121549591 TACTGATAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178470 9 - 10418462 CACGGATAA i speTri2.JH393335 I 262 C 0 s hg19.chr2 231177255 9 + 243199373 CGCTAATGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555707 9 + 247518478 CGCTAATGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119511993 9 + 131632457 CGCTAATGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122724727 9 + 135000294 CACTAATGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696284 9 + 6458163 CGCTAATGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110644 9 + 106825570 CGCTAATGA i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28861429 9 - 32117204 CACTAATCA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42526635 9 + 51628933 CACTGACAA i canFam3.chr25 I 272 C 0 s ailMel1.GL192536.1 1083255 9 - 2169676 CACTGACAA i ailMel1.GL192536.1 I 267 C 0 s equCab2.chr6 17890804 9 + 84719076 CACTGATAA i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 30245 9 - 513109 CAACTGTAA i dasNov3.JH581855 C 0 C 0 s sarHar1.chr2_GL841365_random 490270 9 - 782558 CACTGCTGT i sarHar1.chr2_GL841365_random C 0 C 0 e ornAna1.Contig116551 2166 0 + 2168 I e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 27215 522 + 18451090 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=7845.000000 s mm10.chr1_GL456221_random 156881 1 + 206961 T s rn5.chr9 92395526 1 + 121549591 T i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178479 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177264 1 + 243199373 T i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555716 1 + 247518478 T i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512002 1 + 131632457 T i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122724736 1 + 135000294 T i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696293 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110653 1 + 106825570 T i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28861438 1 - 32117204 T i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42526644 1 + 51628933 T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083264 1 - 2169676 T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890813 1 + 84719076 T i equCab2.chr6 C 0 C 0 s dasNov3.JH581855 30254 1 - 513109 G i dasNov3.JH581855 C 0 I 7 s sarHar1.chr2_GL841365_random 490279 1 - 782558 T i sarHar1.chr2_GL841365_random C 0 C 0 s ornAna1.chr7 32356012 1 + 40039088 T i ornAna1.chr7 I 497 C 0 e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 27215 522 + 18451090 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=4222.000000 s mm10.chr1_GL456221_random 156882 7 + 206961 GAGTACC- s rn5.chr9 92395527 7 + 121549591 GATCACC- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178480 6 - 10418462 GAG-ATT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177265 7 + 243199373 GAGGAGC- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555717 7 + 247518478 GAGGAGC- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512003 7 + 131632457 GAGGAGC- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122724737 7 + 135000294 AAGGAAC- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696294 7 + 6458163 GAGGAGC- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110654 7 + 106825570 GAGGAGC- i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28861439 7 - 32117204 GAATATC- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42526645 7 + 51628933 GAGGATT- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083265 7 - 2169676 GAGGATC- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890814 3 + 84719076 GAG----- i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL841365_random 490280 1 - 782558 ------C- i sarHar1.chr2_GL841365_random C 0 C 0 s ornAna1.chr7 32356013 7 + 40039088 -AGATTCC i ornAna1.chr7 C 0 C 0 e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 27215 522 + 18451090 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e dasNov3.JH581855 30255 7 - 513109 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=2587.000000 s mm10.chr1_GL456221_random 156889 1 + 206961 A s rn5.chr9 92395534 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178486 1 - 10418462 T i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177272 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555724 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512010 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122724744 1 + 135000294 A i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696301 1 + 6458163 A i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110661 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28861446 1 - 32117204 A i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42526652 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083272 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s dasNov3.JH581855 30262 1 - 513109 G i dasNov3.JH581855 I 7 N 0 s sarHar1.chr2_GL841365_random 490281 1 - 782558 A i sarHar1.chr2_GL841365_random C 0 C 0 s ornAna1.chr7 32356020 1 + 40039088 A i ornAna1.chr7 C 0 C 0 e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 27215 522 + 18451090 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e equCab2.chr6 17890817 0 + 84719076 C e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=54758.000000 s mm10.chr1_GL456221_random 156890 22 + 206961 TCATTCTTG-----TCTACATTA-TGtt s rn5.chr9 92395535 20 + 121549591 TCATCCTTG-----TCTGCATTA-TG-- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178487 18 - 10418462 TCGTTTTTG-----TCTTTATTA----- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177273 18 + 243199373 TTGTTTTTG-----TCTTTATTA----- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555725 18 + 247518478 TTGTTTTTG-----TCTTTATTA----- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512011 18 + 131632457 TTGTTTTTG-----TCTTTTTTA----- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122724745 18 + 135000294 TCGTTTTTG-----TCTTTATTA----- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696302 18 + 6458163 TTGTTTTTG-----TCTTTATTA----- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110662 18 + 106825570 TTGTTTTTG-----TCTTTATTA----- i rheMac3.chr12 C 0 C 0 s otoGar3.GL873532 28861447 19 - 32117204 TTATTTTTG-----TCTTTATTAT---- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42526653 18 + 51628933 TTATTTTTG-----TCTTTATGA----- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083273 18 - 2169676 TTATACTTG-----TCTCTATGA----- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890817 8 + 84719076 ---------------TTTCATTA----- i equCab2.chr6 C 0 C 0 s sarHar1.chr2_GL841365_random 490282 18 - 782558 TGACACTAT-----TCTATATTA----- i sarHar1.chr2_GL841365_random C 0 I 4 s ornAna1.chr7 32356021 22 + 40039088 TTGTCATGGGATGTTTTTTGTT------ i ornAna1.chr7 C 0 C 0 e monDom5.chr1 618461613 0 + 748055161 I e saiBol1.JH378144 27215 522 + 18451090 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=348.000000 s mm10.chr1_GL456221_random 156912 10 + 206961 ----tttttttttt s saiBol1.JH378144 27737 10 + 18451090 ----TTTTTGTCTT i saiBol1.JH378144 I 522 C 0 s sarHar1.chr2_GL841365_random 490304 9 - 782558 -----ctctttcta i sarHar1.chr2_GL841365_random I 4 I 1 s ornAna1.chr7 32356043 14 + 40039088 GTTGTCGTTTTGTT i ornAna1.chr7 C 0 C 0 e monDom5.chr1 618461613 0 + 748055161 I e ponAbe2.chr2b 122724763 0 + 135000294 C e otoGar3.GL873532 28861466 0 - 32117204 C e canFam3.chr25 42526671 0 + 51628933 C e ailMel1.GL192536.1 1083291 0 - 2169676 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4178505 0 - 10418462 C e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110680 0 + 106825570 C e equCab2.chr6 17890825 0 + 84719076 C e nomLeu2.GL397366 3696320 0 + 6458163 C e gorGor3.chr2B 119512029 0 + 131632457 C e panTro4.chr2B 235555743 0 + 247518478 C e hg19.chr2 231177291 0 + 243199373 C e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92395555 0 + 121549591 C a score=1864.000000 s mm10.chr1_GL456221_random 156922 5 + 206961 ttttt s saiBol1.JH378144 27747 5 + 18451090 TATTT i saiBol1.JH378144 C 0 C 0 s monDom5.chr2 530368988 4 - 541556283 -TTTT i monDom5.chr2 I 1248 I 1 s sarHar1.chr2_GL841365_random 490314 4 - 782558 -cttt i sarHar1.chr2_GL841365_random I 1 I 1 s ornAna1.chr7 32356057 5 + 40039088 CGTTT i ornAna1.chr7 C 0 C 0 e ponAbe2.chr2b 122724763 0 + 135000294 C e otoGar3.GL873532 28861466 0 - 32117204 C e canFam3.chr25 42526671 0 + 51628933 C e ailMel1.GL192536.1 1083291 0 - 2169676 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4178505 0 - 10418462 C e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110680 0 + 106825570 C e equCab2.chr6 17890825 0 + 84719076 C e nomLeu2.GL397366 3696320 0 + 6458163 C e gorGor3.chr2B 119512029 0 + 131632457 C e panTro4.chr2B 235555743 0 + 247518478 C e hg19.chr2 231177291 0 + 243199373 C e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I e rn5.chr9 92395555 0 + 121549591 C a score=-3860.000000 s mm10.chr1_GL456221_random 156927 1 + 206961 -t s rn5.chr9 92395555 1 + 121549591 -A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178505 1 - 10418462 -T i speTri2.JH393335 C 0 C 0 s saiBol1.JH378144 27752 1 + 18451090 -A i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42526671 1 + 51628933 -T i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083291 1 - 2169676 -T i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890825 1 + 84719076 -T i equCab2.chr6 C 0 C 0 s monDom5.chr2 530368993 1 - 541556283 -T i monDom5.chr2 I 1 C 0 s sarHar1.chr2_GL841365_random 490319 1 - 782558 -t i sarHar1.chr2_GL841365_random I 1 C 0 s ornAna1.chr7 32356062 1 + 40039088 G- i ornAna1.chr7 C 0 C 0 e ponAbe2.chr2b 122724763 0 + 135000294 C e otoGar3.GL873532 28861466 0 - 32117204 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110680 0 + 106825570 C e nomLeu2.GL397366 3696320 0 + 6458163 C e gorGor3.chr2B 119512029 0 + 131632457 C e panTro4.chr2B 235555743 0 + 247518478 C e hg19.chr2 231177291 0 + 243199373 C e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=38438.000000 s mm10.chr1_GL456221_random 156928 6 + 206961 tttttt s rn5.chr9 92395556 6 + 121549591 TTTTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178506 6 - 10418462 TTTTTT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177291 4 + 243199373 --TTTT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555743 4 + 247518478 --TTTT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512029 4 + 131632457 --TTTT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122724763 6 + 135000294 CTTTTT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696320 4 + 6458163 --TTTT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110680 4 + 106825570 --TTTT i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 27753 6 + 18451090 TTTTTA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28861466 5 - 32117204 -TTTTT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42526672 6 + 51628933 TTATTT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083292 6 - 2169676 TTATTT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890826 6 + 84719076 TTTTTT i equCab2.chr6 C 0 C 0 s monDom5.chr2 530368994 6 - 541556283 TTTTCT i monDom5.chr2 C 0 C 0 s sarHar1.chr2_GL841365_random 490320 6 - 782558 tctttt i sarHar1.chr2_GL841365_random C 0 N 0 s ornAna1.chr7 32356063 6 + 40039088 GTTTTT i ornAna1.chr7 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=800866.000000 s mm10.chr1_GL456221_random 156934 104 + 206961 tttAGGACCCTAAGTTTGGCGAAATGGGACTTAGACTGGAGTCCAAATTTGAGAAGGGTTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATGAAAAGAGTTGA s rn5.chr9 92395562 104 + 121549591 TCTAGGACCCTAAGTTTGGTGAAATGGGACTCATACTGGAGTCCAAGTTTGAGAAGAGTTTCAAGGAAGCGTTTGCTATTCAAGGAAGAAGTGAAAAGAGTTGA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178512 104 - 10418462 TCCAGTACCGTGAGTGTGGCCAAATGGGAATTAGACTGGAGACTGAATTCGAGAAGAATTTGAAGGGACTGTTCACCATTCAGGAAACAAATGAAAATAGTTGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177295 104 + 243199373 TTCAGTACAAGGATTTTGGCCAAATGGGATTTAGACTGGAGGCTGAGTTTGAGAAGAATTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATGGGAACAATTGA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555747 104 + 247518478 TTCAGTACAAGGATTTTGGCCAAATGGGATTTAGACTGGAGGCTGAGTTTGAGAAGAATTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATGGGAACAATTGA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512033 104 + 131632457 TTCAGTACAAGGATTTTGGCCAAATGGGATTTAGACTGGAGGCTGAGTTTGAGAAGAATTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATGGGAACAATTGA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122724769 104 + 135000294 TCCAGTACAAGGATTTTGGCCAAATGGGACTTAGACTGGAGGCTGAATTTGAGAAGGATTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATGGGAACAGTTGA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696324 104 + 6458163 TTCAGTACAAGGATTTTGGCCAAATGGGACTTAGACTGGAGACTGAGTTTGAGAAGAATTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATGGGAACAATTGA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110684 104 + 106825570 TTCAGTACAAGGATTTTGGCCAAATGGGACTTAGACTGGAGGCTGAATTTGAGAAGGATTTCAAGGAAGTGTTTGCTATTCAGGAAACAAATGGGAACAATTGA i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 27759 104 + 18451090 TCTAGTACAAGGATTTTGGCCAAATGGGACTTCGACTGGAAACTGAATTTGAGAAGAATTTGAAGGAAGTGTTTGCTATTCAGGAAACAAATGGGATTAATTAA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28861471 104 - 32117204 TCTAGTATAATAATTTTGGCCAAATGGGATTTAGACTGGAGGCCGAATTTGAGAAGAATTTTAAGGAAATGTTTGCCATTCAGGAAAAGGATGAGAACAGTTGA i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42526678 104 + 51628933 TTCAGTACAATGACTTTGGCCTAATGGGACTTAGACTGGAAGCTGAATTTGAAAGGAAATTCAAGGAAGTGTTTGCTATTGAAGAAACAAATGAGAGCAGTTCA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083298 104 - 2169676 TTCAGTACAATGACTTTGGCCTAATGGGACTTAGACTAGAGGCAGAATTCGAGAGGAAATTCAAGGAAGTGTTTGCTATTGAAGAAACAAATGAGAGCAGTTCA i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890832 104 + 84719076 TTCAGTACAATGACTTTGGCCTAATGGGACTTAGACTGGAGGCGGAATTTGAGAAGAATTTCAAGGAAGTGTTTGCTATTCAGGAAGCAAATGAGAACAGCTCA i equCab2.chr6 C 0 C 0 s monDom5.chr2 530369000 104 - 541556283 TTCAGAACAACTATTTTGGTCTTCTGGGAGCAAAGTTGGAGACAGAGTTTGAGAAGGATTTCAAAGCAGTCTTTGATATTAAGGAAGAGGATAAAGAGGTCTGA i monDom5.chr2 C 0 N 0 s ornAna1.chr7 32356069 104 + 40039088 TTCAGAACAACAAGTTTGGCCAAATGGGAATTAAACTGAAGAAGGTATTTGAGAAGAATTTCAAACAAGTGTTTTCTATACAGGAAATAGAAGAGGCCTGCTAA i ornAna1.chr7 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=12761.000000 s mm10.chr1_GL456221_random 157038 2 + 206961 CT s rn5.chr9 92395666 2 + 121549591 CT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178616 2 - 10418462 CT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177399 2 + 243199373 CT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555851 2 + 247518478 CT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512137 2 + 131632457 CT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122724873 2 + 135000294 CT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3696428 2 + 6458163 CT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110788 2 + 106825570 CT i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 27863 2 + 18451090 CT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28861575 2 - 32117204 CT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42526782 2 + 51628933 CT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083402 2 - 2169676 CT i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890936 2 + 84719076 CT i equCab2.chr6 C 0 C 0 s ornAna1.chr7 32356173 1 + 40039088 C- i ornAna1.chr7 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 137248 1364 + 176633 I a score=10500.000000 s mm10.chr1_GL456221_random 157040 1 + 206961 G s rn5.chr9 92395668 1 + 121549591 G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178618 1 - 10418462 G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177401 1 + 243199373 G i hg19.chr2 C 0 C 0 s panTro4.chr2B 235555853 1 + 247518478 G i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512139 1 + 131632457 G i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122724875 1 + 135000294 G i ponAbe2.chr2b C 0 I 931 s nomLeu2.GL397366 3696430 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94110790 1 + 106825570 G i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 27865 1 + 18451090 G i saiBol1.JH378144 C 0 I 617 s micMur1.scaffold_3075 138612 1 + 176633 G i micMur1.scaffold_3075 I 1364 I 1744 s otoGar3.GL873532 28861577 1 - 32117204 G i otoGar3.GL873532 C 0 I 72 s canFam3.chr25 42526784 1 + 51628933 G i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083404 1 - 2169676 G i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890938 1 + 84719076 G i equCab2.chr6 C 0 C 0 e ornAna1.chr7 32356174 0 + 40039088 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I a score=1001.000000 s mm10.chr1_GL456221_random 157041 2 + 206961 AA s rn5.chr9 92395669 2 + 121549591 AT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178619 2 - 10418462 GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231177402 2 + 243199373 GA i hg19.chr2 C 0 I 642 s panTro4.chr2B 235555854 2 + 247518478 GA i panTro4.chr2B C 0 I 639 s gorGor3.chr2B 119512140 2 + 131632457 GA i gorGor3.chr2B C 0 I 648 s nomLeu2.GL397366 3696431 2 + 6458163 GA i nomLeu2.GL397366 C 0 I 639 s rheMac3.chr12 94110791 2 + 106825570 GA i rheMac3.chr12 C 0 I 901 s otoGar3.GL873532 28861650 2 - 32117204 aa i otoGar3.GL873532 I 72 C 0 s canFam3.chr25 42526785 2 + 51628933 GC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083405 2 - 2169676 GC i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17890939 2 + 84719076 Gt i equCab2.chr6 C 0 C 0 e ornAna1.chr7 32356174 0 + 40039088 C e saiBol1.JH378144 27866 617 + 18451090 I e ponAbe2.chr2b 122724876 931 + 135000294 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=-7251.000000 s mm10.chr1_GL456221_random 157043 19 + 206961 ATCAGAGACATGGCTGGTG s rn5.chr9 92395671 19 + 121549591 GTCACAGATCCCACTGGTG i rn5.chr9 C 0 I 16 s speTri2.JH393335 4178621 19 - 10418462 GCAGTAACTGCTCTTGGTG i speTri2.JH393335 C 0 I 16 s otoGar3.GL873532 28861652 16 - 32117204 ---atgagagcatttggtg i otoGar3.GL873532 C 0 I 37 s canFam3.chr25 42526787 16 + 51628933 gtagtggaggctattt--- i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1083407 16 - 2169676 Atagtggaggttgttg--- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17890941 16 + 84719076 gtagtggatgctggtg--- i equCab2.chr6 C 0 I 1 s ornAna1.chr7 32356174 7 + 40039088 ----TGGCTTT-------- i ornAna1.chr7 C 0 C 0 e saiBol1.JH378144 27866 617 + 18451090 I e ponAbe2.chr2b 122724876 931 + 135000294 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e nomLeu2.GL397366 3696433 639 + 6458163 I e gorGor3.chr2B 119512142 648 + 131632457 I e panTro4.chr2B 235555856 639 + 247518478 I e hg19.chr2 231177404 642 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=-7703.000000 s mm10.chr1_GL456221_random 157062 3 + 206961 TCA s rn5.chr9 92395706 3 + 121549591 TCA i rn5.chr9 I 16 C 0 s speTri2.JH393335 4178656 3 - 10418462 TTT i speTri2.JH393335 I 16 C 0 s panTro4.chr2B 235556495 3 + 247518478 tct i panTro4.chr2B I 639 C 0 s gorGor3.chr2B 119512790 3 + 131632457 tct i gorGor3.chr2B I 648 C 0 s ponAbe2.chr2b 122725807 3 + 135000294 tct i ponAbe2.chr2b I 931 C 0 s nomLeu2.GL397366 3697072 3 + 6458163 tct i nomLeu2.GL397366 I 639 C 0 s saiBol1.JH378144 28483 3 + 18451090 tct i saiBol1.JH378144 I 617 C 0 s otoGar3.GL873532 28861705 2 - 32117204 -tt i otoGar3.GL873532 I 37 I 1 s canFam3.chr25 42526804 2 + 51628933 ta- i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1083424 2 - 2169676 ta- i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17890958 2 + 84719076 tg- i equCab2.chr6 I 1 C 0 s ornAna1.chr7 32356181 3 + 40039088 TCT i ornAna1.chr7 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e hg19.chr2 231177404 642 + 243199373 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=4882.000000 s mm10.chr1_GL456221_random 157065 2 + 206961 CC- s rn5.chr9 92395709 2 + 121549591 TC- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178659 2 - 10418462 TC- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178046 2 + 243199373 tc- i hg19.chr2 I 642 C 0 s panTro4.chr2B 235556498 2 + 247518478 tc- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512793 2 + 131632457 tc- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122725810 2 + 135000294 tc- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697075 2 + 6458163 tc- i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 28486 2 + 18451090 tc- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28861708 2 - 32117204 tc- i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42526806 2 + 51628933 ct- i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1083426 2 - 2169676 tc- i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17890960 2 + 84719076 cc- i equCab2.chr6 C 0 I 4 s ornAna1.chr7 32356184 2 + 40039088 -CT i ornAna1.chr7 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212448170 1905 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=17097.000000 s mm10.chr1_GL456221_random 157067 11 + 206961 TGGCCATGTCT s rn5.chr9 92395711 11 + 121549591 TATCCATGCCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178661 11 - 10418462 TGCCAAGATCC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178048 11 + 243199373 tggccaggtct i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556500 11 + 247518478 tggccaggtct i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512795 11 + 131632457 tggccaggtct i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122725812 11 + 135000294 tggccaggtct i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697077 11 + 6458163 tggccaggcct i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 28488 11 + 18451090 tggccaggtct i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28861710 11 - 32117204 tgcccaaagat i otoGar3.GL873532 C 0 C 0 s felCat5.chrC1 212450075 10 + 221441202 tggaaaatct- i felCat5.chrC1 I 1905 I 543 s canFam3.chr25 42526809 11 + 51628933 tggaaaatccc i canFam3.chr25 I 1 I 15 s ailMel1.GL192536.1 1083429 11 - 2169676 tggaaaactcc i ailMel1.GL192536.1 I 1 I 15 s equCab2.chr6 17890966 6 + 84719076 tgggca----- i equCab2.chr6 I 4 I 4 s ornAna1.chr7 32356186 11 + 40039088 TGTCTGCATTC i ornAna1.chr7 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=24367.000000 s mm10.chr1_GL456221_random 157078 46 + 206961 GGCTCACCTG---------CAGCAGC-----AATGAGTGTTCTTTATAGACTCT-ATCATT s rn5.chr9 92395722 45 + 121549591 -ACCCACCTA---------CAGCAAC-----AATGACTGTTTTCTACAGACGCC-ATCGTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178672 43 - 10418462 --CCCACCCT---------CGGCTGC-----AGTGAGCACCGTTTACGAAGTCT-AGCAT- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178059 47 + 243199373 -tttcatccc---------caactgctg---agtggtggctgctaattaatgcc-agtagt i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556511 47 + 247518478 -tttcatccc---------caactgctg---agtggtggctgctaattaatgcc-agtagt i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512806 47 + 131632457 -tttcatccc---------caactgctg---agtggtggctgctaattaatgcc-agtagt i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122725823 43 + 135000294 -tttcatccc---------cagctgctg---agtggtggctgc----tgatgcc-agcagt i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697088 47 + 6458163 -tttcatccc---------cagctgctg---agtggtggctgctaattaatgcc-agtagt i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 28499 43 + 18451090 -tttcatcca---------cagctgctg---agtggtggctgc----tattgcc-agcagt i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28861721 55 - 32117204 -ggagcccccaaaagggctcggttgtca---taagtttcctccctgggaaactc-atcag- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42526835 47 + 51628933 tttcatcccc---------cagctgc-----tgtgaggattggctgttgctgccaacccct i canFam3.chr25 I 15 C 0 s ailMel1.GL192536.1 1083455 46 - 2169676 cctcatctcc---------cggctgc-----tgtgaggattggccgctgatacc-actgct i ailMel1.GL192536.1 I 15 C 0 s equCab2.chr6 17890976 46 + 84719076 tctcaacctc---------cagctgc-----tgtgagagttggctgctgatgcc-acccct i equCab2.chr6 I 4 C 0 s ornAna1.chr7 32356197 48 + 40039088 TGGTCAGCCT---------CAACAGTGTTACACTGATTTTTGTGCACTTTTGTC-ATT--- i ornAna1.chr7 C 0 N 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=146534.000000 s mm10.chr1_GL456221_random 157124 55 + 206961 CCC-GGATGATTACTCTTGGTCATATGGAAACAGGTGCAGCTAGGAGTTACACCTC s rn5.chr9 92395767 49 + 121549591 CCC-AGAGGATTGCTCTGGGTCACATGGAGACAGGTGCATCTGGG------ACCTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178715 42 - 10418462 -------------CCCTGAGCCAAAGAAAGCCAGCTTCAGCCGGG-GTGGCACCGC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178106 56 + 243199373 ccccagaatattacccggggtcaagtggaaccagcttcacctggaagtgacacccc i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556558 56 + 247518478 ccccagaatattacccggggtcaagtggaaccagcttcacctggaagtgacacccc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512853 56 + 131632457 ccccagaatattaccctgggtcaagtggaaccagcttcacctggaagtgacaccct i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122725866 56 + 135000294 ccccagagtattgcccttggttaaatggaatcagcttcacctggaagtgacgcccc i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697135 56 + 6458163 ccccagagtattaccctgggtcaagtggaaccagcttcacctggaagtgacaccct i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 28542 56 + 18451090 ctccagagtattaccctggatctaatggaaccagcttcacctagaggtgacacccc i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28861776 51 - 32117204 ccagggaatgttaactcagataacacggaagaagat-----tggaagtgacacagc i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42526882 52 + 51628933 ccccaacatatcaccttctacc-aatg---ccagcttcacctggagattatacctc i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083501 52 - 2169676 ccccaaagcatcaccttcttcc-agtg---ccagattcacctgaagtttacacctc i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891022 56 + 84719076 ccccagaatattgcctttggccaaatggacccaccttcacctgcaagttactcctc i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 30448 1166 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e vicPac1.scaffold_4435 69287 2346 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=-24436.000000 s mm10.chr1_GL456221_random 157179 1 + 206961 -T s rn5.chr9 92395816 1 + 121549591 -C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178757 1 - 10418462 -C i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178162 1 + 243199373 -g i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556614 1 + 247518478 -g i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512909 1 + 131632457 -g i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122725922 1 + 135000294 -a i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697191 1 + 6458163 -g i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 28598 1 + 18451090 -g i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28861827 1 - 32117204 -c i otoGar3.GL873532 C 0 C 0 s vicPac1.scaffold_4435 71633 1 + 111236 T- i vicPac1.scaffold_4435 I 2346 I 6511 s turTru2.JH486691 31614 1 - 63237 t- i turTru2.JH486691 I 1166 I 7861 s canFam3.chr25 42526934 1 + 51628933 t- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083553 1 - 2169676 t- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891078 1 + 84719076 c- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e rheMac3.chr12 94110793 901 + 106825570 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=4724.000000 s mm10.chr1_GL456221_random 157180 7 + 206961 -TGGCCT-G s rn5.chr9 92395817 7 + 121549591 -TGGCCT-G i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178758 7 - 10418462 -CAGCCT-G i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178163 6 + 243199373 -tggcct-- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556615 6 + 247518478 -tggcct-- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512910 6 + 131632457 -tggcct-- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122725923 6 + 135000294 -tggcct-- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697192 6 + 6458163 -tggcct-- i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 28599 6 + 18451090 -tggcct-- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28861828 7 - 32117204 -cagaTTG- i otoGar3.GL873532 C 0 I 458 s canFam3.chr25 42526935 7 + 51628933 tgggcct-- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083554 7 - 2169676 tgagtgt-- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891079 7 + 84719076 ctggatt-- i equCab2.chr6 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=9087.000000 s mm10.chr1_GL456221_random 157187 4 + 206961 -GGGG s rn5.chr9 92395824 3 + 121549591 -AGG- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178765 4 - 10418462 -TGAg i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178169 4 + 243199373 -gagg i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556621 4 + 247518478 -gagg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512916 4 + 131632457 -gagg i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122725929 4 + 135000294 -gagg i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697198 4 + 6458163 -gagg i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 28605 4 + 18451090 -gagg i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42526942 5 + 51628933 agggg i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083561 4 - 2169676 -gggg i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891086 4 + 84719076 -ggag i equCab2.chr6 C 0 C 0 e otoGar3.GL873532 28861835 458 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=70019.000000 s mm10.chr1_GL456221_random 157191 69 + 206961 ------TCCATCCCCTTTTCTCCCCATGAAATCAAGAGTATG--GTGCA----TTGCTGCTCTCTGGTCTTCAAGGGTCTA s rn5.chr9 92395827 64 + 121549591 ----------TCCGTCCTCCTCTTCATGAAATCAAGA-TATA--CTATA----TTGTTGCTCTCTGCTCTCCAACCGTCTA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178769 60 - 10418462 ------ctggttcccttgccttaaggtagaaccaggg---------ata----ccgtgg--ctacggatcccacggaacca i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178173 67 + 243199373 ------ccagcccccttgcctgaaagcaggaccaaaggtatg--gtgtg----cggcta--ctctgtgttcccaggtatca i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556625 67 + 247518478 ------ccggcccccttgcctgaaagcaggaccaaaggtgtg--gtgtg----cggcta--ctctgtgttcccaggtatca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119512920 67 + 131632457 ------ccagcccccttgcctgaaagcaggaccaagggtgtg--gtgtg----cggcta--ctctgtgctcccaggtatca i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122725933 67 + 135000294 ------ccggcccctttgcctcaaagcaggaccaagggtgtg--gtgtg----cggcta--ccacgtgctcccaggtatca i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697202 67 + 6458163 ------ctggcccccttgcctcaaagcaggcccaagggtgtg--gtgtg----cggcta--ctctgtgctcccaggtatca i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 28609 67 + 18451090 ------ctgacccccttgactcaaagcaggaccaaggatgtg--gtgtg----cggcta--ctctgtgctccctggaatca i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42526947 68 + 51628933 ------ctggcccct-agtcccaaggatggaccag-catgtggtgtgtgattcatgttc--ctacactcc---caagatca i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083565 69 - 2169676 ------ctggccctc-agccccaaggtgggaccaa-tgtgtg--gtgtgattcatgctc--cttcagtccccacgagatca i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891090 70 + 84719076 ------ccgggcccc-agccccaaggtggaaccaaccgtgtg--gtgtgactcatgttc--ccgtgctccccacgggatca i equCab2.chr6 C 0 C 0 s anoCar2.chr6 25028290 69 - 80741955 TTCATACTTGCCTTT-TGTCTTAATATAAAA--AAGATCGAA--ACTCA----ATAC-A--CTTCACTTATAGATGAGCCA i anoCar2.chr6 N 0 C 0 e otoGar3.GL873532 28861835 458 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=109630.000000 s mm10.chr1_GL456221_random 157260 22 + 206961 GGCTGGAGCCTGTCTCCAGCTG s rn5.chr9 92395891 22 + 121549591 AGCTGGACCCTGTCTCCAGTTG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178829 22 - 10418462 ggctgaagctcgtctgcagctg i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178240 22 + 243199373 ggctggagctagtctccagctg i hg19.chr2 C 0 I 2 s panTro4.chr2B 235556692 22 + 247518478 ggctggagctagtctccagctg i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119512987 22 + 131632457 ggctggagctagtccccagctg i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122726000 22 + 135000294 ggctggagctagtctctagctg i ponAbe2.chr2b C 0 I 87 s nomLeu2.GL397366 3697269 22 + 6458163 ggctggagctagtctccagctg i nomLeu2.GL397366 C 0 I 2 s saiBol1.JH378144 28676 21 + 18451090 ggctggagctagtctccagct- i saiBol1.JH378144 C 0 I 3 s canFam3.chr25 42527015 22 + 51628933 agctggagccagtctccagctg i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1083634 22 - 2169676 agctggagctagtctccagctg i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17891160 22 + 84719076 ggctggagctagtctccagctg i equCab2.chr6 C 0 I 2 s sarHar1.chr3_GL849792_random 667750 22 + 1053443 GGCTTGGGATTGCCAGAAGTCA i sarHar1.chr3_GL849792_random N 0 I 19 s anoCar2.chr6 25028359 22 - 80741955 Agctctttattattttcattgg i anoCar2.chr6 C 0 C 0 e otoGar3.GL873532 28861835 458 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=11458.000000 s mm10.chr1_GL456221_random 157282 27 + 206961 GCTTTGCTCCACCACCACTGCAACCCC------- s rn5.chr9 92395913 20 + 121549591 GCTTTGCCCC-------CCACAACCCC------- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178851 10 - 10418462 acctcacctt------------------------ i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178264 21 + 243199373 gccacaccct------ggtttagcttt------- i hg19.chr2 I 2 C 0 s panTro4.chr2B 235556716 21 + 247518478 gccacaccct------ggcttagcttt------- i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119513011 21 + 131632457 gccacatcct------ggcttagcttt------- i gorGor3.chr2B I 2 C 0 s nomLeu2.GL397366 3697293 21 + 6458163 gccacaccct------ggcttagcttt------- i nomLeu2.GL397366 I 2 C 0 s saiBol1.JH378144 28700 21 + 18451090 gcaacatcca------ggcttagcttt------- i saiBol1.JH378144 I 3 C 0 s canFam3.chr25 42527039 21 + 51628933 accacatcca------tgcttggcttt------- i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1083658 21 - 2169676 gccacatcca------tgcttggtttt------- i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17891184 21 + 84719076 accacatcct------tgcttaccttt------- i equCab2.chr6 I 2 C 0 s sarHar1.chr3_GL849792_random 667791 21 + 1053443 ACTGCGGCCT------GGGGCTCCTTC------- i sarHar1.chr3_GL849792_random I 19 I 1 s anoCar2.chr6 25028381 27 - 80741955 -cTTTATTTC------CATCTATTCTACCACCCT i anoCar2.chr6 C 0 C 0 e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=4664.000000 s mm10.chr1_GL456221_random 157309 1 + 206961 T s rn5.chr9 92395933 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231178285 1 + 243199373 t i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556737 1 + 247518478 t i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513032 1 + 131632457 t i gorGor3.chr2B C 0 C 0 s nomLeu2.GL397366 3697314 1 + 6458163 t i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 28721 1 + 18451090 t i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42527060 1 + 51628933 t i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1083679 1 - 2169676 t i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17891205 1 + 84719076 t i equCab2.chr6 C 0 I 2 s sarHar1.chr3_GL849792_random 667813 1 + 1053443 C i sarHar1.chr3_GL849792_random I 1 C 0 s anoCar2.chr6 25028408 1 - 80741955 T i anoCar2.chr6 C 0 C 0 e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4178861 0 - 10418462 C e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=1538.000000 s mm10.chr1_GL456221_random 157310 52 + 206961 CCCCCCACA------------TATATGTTGCTTTTCTTGTCTCTTACTCTCCTGAGAGCAATCC s rn5.chr9 92395934 52 + 121549591 ACTCACATA------------CTTATCTTGCTTTCTTTGTCTCCTACTCTCCGGAGAGCAACTC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178861 50 - 10418462 tctcgcttt------------gttaggttgc--tccctcgctcctcttctcctgagagagcttc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178286 42 + 243199373 ggccacacg---------------atgctgctt-------cccctactcccttctgagcgaacc i hg19.chr2 C 0 I 3 s panTro4.chr2B 235556738 42 + 247518478 ggccacatg---------------atgctgctt-------cccctactcccttctgagcgaacc i panTro4.chr2B C 0 I 22 s gorGor3.chr2B 119513033 42 + 131632457 ggcctcacg---------------atgctgctt-------cccctacttccttctgagtgaacc i gorGor3.chr2B C 0 I 3 s nomLeu2.GL397366 3697315 42 + 6458163 ggccacacg---------------atgctgctt-------cccctactcccttctgagcaaacc i nomLeu2.GL397366 C 0 I 22 s saiBol1.JH378144 28722 42 + 18451090 ggccacaca---------------gtgctgctt-------cccctactcccttgcgagtgaacg i saiBol1.JH378144 C 0 I 3 s canFam3.chr25 42527063 48 + 51628933 caccacacg---------------atcctgctt-ctctcatccctcttctcttgaaaaaattct i canFam3.chr25 I 2 I 1 s ailMel1.GL192536.1 1083682 48 - 2169676 caccactca---------------atcctgctt-ccctctccctttttctcctgaaaaaattct i ailMel1.GL192536.1 I 2 I 1 s equCab2.chr6 17891208 6 + 84719076 cgccat---------------------------------------------------------- i equCab2.chr6 I 2 C 0 s sarHar1.chr3_GL849792_random 667814 52 + 1053443 CACCTCACACCATTGTTGCTGTTCCTGCTGCTT-CTATTCCTCCTGCTATTCT----------- i sarHar1.chr3_GL849792_random C 0 C 0 s anoCar2.chr6 25028409 52 - 80741955 TCCTCCACC------------AATAATTTGTTATTCTTGTTTCCTACATTTCAGCAAGCTGTTC i anoCar2.chr6 C 0 C 0 e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=2169.000000 s mm10.chr1_GL456221_random 157362 1 + 206961 A s rn5.chr9 92395986 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178911 1 - 10418462 a i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178331 1 + 243199373 a i hg19.chr2 I 3 C 0 s gorGor3.chr2B 119513078 1 + 131632457 a i gorGor3.chr2B I 3 C 0 s saiBol1.JH378144 28767 1 + 18451090 a i saiBol1.JH378144 I 3 C 0 s canFam3.chr25 42527112 1 + 51628933 a i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1083731 1 - 2169676 a i ailMel1.GL192536.1 I 1 C 0 s sarHar1.chr3_GL849792_random 667866 1 + 1053443 T i sarHar1.chr3_GL849792_random C 0 C 0 s anoCar2.chr6 25028461 1 - 80741955 A i anoCar2.chr6 C 0 N 0 e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e equCab2.chr6 17891214 0 + 84719076 C e nomLeu2.GL397366 3697357 22 + 6458163 I e panTro4.chr2B 235556780 22 + 247518478 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=16858.000000 s mm10.chr1_GL456221_random 157363 9 + 206961 CAATAAACC s rn5.chr9 92395987 9 + 121549591 CAATAAACT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178912 9 - 10418462 caataaacc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178332 9 + 243199373 ccatcaatc i hg19.chr2 C 0 C 0 s gorGor3.chr2B 119513079 9 + 131632457 ccatcaatc i gorGor3.chr2B C 0 C 0 s saiBol1.JH378144 28768 9 + 18451090 ccataaatc i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42527113 9 + 51628933 taataaatc i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1083732 9 - 2169676 taataaatc i ailMel1.GL192536.1 C 0 I 2 s sarHar1.chr3_GL849792_random 667867 9 + 1053443 CCATAAAGC i sarHar1.chr3_GL849792_random C 0 C 0 e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e equCab2.chr6 17891214 0 + 84719076 C e nomLeu2.GL397366 3697357 22 + 6458163 I e panTro4.chr2B 235556780 22 + 247518478 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=-2286.000000 s mm10.chr1_GL456221_random 157372 4 + 206961 ATAA s rn5.chr9 92395996 4 + 121549591 CCAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178921 4 - 10418462 aata i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178341 4 + 243199373 tctt i hg19.chr2 C 0 C 0 s gorGor3.chr2B 119513088 4 + 131632457 tctt i gorGor3.chr2B C 0 C 0 s sarHar1.chr3_GL849792_random 667876 4 + 1053443 ATGA i sarHar1.chr3_GL849792_random C 0 N 0 e saiBol1.JH378144 28777 0 + 18451090 C e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e canFam3.chr25 42527122 1 + 51628933 I e ailMel1.GL192536.1 1083741 2 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e equCab2.chr6 17891214 0 + 84719076 C e nomLeu2.GL397366 3697357 22 + 6458163 I e panTro4.chr2B 235556780 22 + 247518478 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=2396.000000 s mm10.chr1_GL456221_random 157376 4 + 206961 GCTT s rn5.chr9 92396000 4 + 121549591 GTTT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178925 4 - 10418462 cctt i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178345 4 + 243199373 gctt i hg19.chr2 C 0 C 0 s gorGor3.chr2B 119513092 4 + 131632457 gctt i gorGor3.chr2B C 0 C 0 e saiBol1.JH378144 28777 0 + 18451090 C e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e canFam3.chr25 42527122 1 + 51628933 I e ailMel1.GL192536.1 1083741 2 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e equCab2.chr6 17891214 0 + 84719076 C e nomLeu2.GL397366 3697357 22 + 6458163 I e panTro4.chr2B 235556780 22 + 247518478 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=-45371.000000 s mm10.chr1_GL456221_random 157380 56 + 206961 CCAAGACTTCAAACC-------------A-------------------Tgtggtggc------------------------tcatt--------------------------------------------------cctgtagcttcag------------------------------tccttgag----aggct s rn5.chr9 92396004 56 + 121549591 CCAAGGCTGCAAACC-------------A-------------------TGGggtggc------------------------tcatt--------------------------------------------------cctgcaatctcag------------------------------tccttgag----aagct i rn5.chr9 C 0 C 0 s speTri2.JH393335 4178929 183 - 10418462 aagatactccaactc-------------agactctgcctctagggGGCTGGGTTAGTTGTTGTtgttggtttttttctttatcattgtgacaaatgcctgagaaaaacaacttagaggaggagagatttcttttggtttgcagtttcagaggtttctgtttatggccggcggactccactgctccaggcctgaggt i speTri2.JH393335 C 0 C 0 s gorGor3.chr2B 119513096 22 + 131632457 aagggacttcatccc-------------a-------------------gaatgt---------------------------------------------------------------------------------------------------------------------------------------------- i gorGor3.chr2B C 0 C 0 s canFam3.chr25 42527123 15 + 51628933 -------cttactta-------------a-------------------gagact---------------------------------------------------------------------------------------------------------------------------------------------- i canFam3.chr25 I 1 C 0 s equCab2.chr6 17891214 31 + 84719076 --aacatcttgcttcccccacttctccta-------------------gaga------------------------------------------------------------------------------------------------------------------------------------------------ i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 28777 0 + 18451090 C e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e ailMel1.GL192536.1 1083741 2 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e nomLeu2.GL397366 3697357 22 + 6458163 I e panTro4.chr2B 235556780 22 + 247518478 I e hg19.chr2 231178349 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=998.000000 s mm10.chr1_GL456221_random 157436 39 + 206961 gaggcag-------------------------gaggatagctgcaaatgcaatgc-------------------------gagcctggg s rn5.chr9 92396060 39 + 121549591 gaggcag-------------------------gaggatagttgcaagggtcatgc-------------------------cagcctgag i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179112 89 - 10418462 gaggcagaacaccatggtggaagaacatggccgaggaaggcggcaactcagaagcagagagagaaggaggaaagagaacagggccaggg i speTri2.JH393335 C 0 C 0 e saiBol1.JH378144 28777 0 + 18451090 C e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e canFam3.chr25 42527138 0 + 51628933 C e ailMel1.GL192536.1 1083741 2 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e equCab2.chr6 17891245 0 + 84719076 C e nomLeu2.GL397366 3697357 22 + 6458163 I e gorGor3.chr2B 119513118 0 + 131632457 C e panTro4.chr2B 235556780 22 + 247518478 I e hg19.chr2 231178349 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=107.000000 s mm10.chr1_GL456221_random 157475 16 + 206961 ctacatagtgactttc s rn5.chr9 92396099 16 + 121549591 ctacatagtgacttgc i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179201 16 - 10418462 acaaggaatagccttc i speTri2.JH393335 C 0 I 86 s equCab2.chr6 17891245 5 + 84719076 ----------acttt- i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 28777 0 + 18451090 C e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e canFam3.chr25 42527138 0 + 51628933 C e ailMel1.GL192536.1 1083741 2 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e nomLeu2.GL397366 3697357 22 + 6458163 I e gorGor3.chr2B 119513118 0 + 131632457 C e panTro4.chr2B 235556780 22 + 247518478 I e hg19.chr2 231178349 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=517.000000 s mm10.chr1_GL456221_random 157491 15 + 206961 agctaccctggctta s rn5.chr9 92396115 15 + 121549591 agctaccctggctta i rn5.chr9 C 0 C 0 s equCab2.chr6 17891250 3 + 84719076 -----ccc------- i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 28777 0 + 18451090 C e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e canFam3.chr25 42527138 0 + 51628933 C e ailMel1.GL192536.1 1083741 2 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4179217 86 - 10418462 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e nomLeu2.GL397366 3697357 22 + 6458163 I e gorGor3.chr2B 119513118 0 + 131632457 C e panTro4.chr2B 235556780 22 + 247518478 I e hg19.chr2 231178349 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=497.000000 s mm10.chr1_GL456221_random 157506 15 + 206961 taaaggt-----ttctggaa s rn5.chr9 92396130 20 + 121549591 taaaggtctcaattctggaa i rn5.chr9 C 0 C 0 s gorGor3.chr2B 119513118 10 + 131632457 -----gc-----ttctgggg i gorGor3.chr2B C 0 C 0 s saiBol1.JH378144 28777 8 + 18451090 ------------tactggtt i saiBol1.JH378144 C 0 C 0 e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28861835 458 - 32117204 I e canFam3.chr25 42527138 0 + 51628933 C e ailMel1.GL192536.1 1083741 2 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4179217 86 - 10418462 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e equCab2.chr6 17891253 0 + 84719076 C e nomLeu2.GL397366 3697357 22 + 6458163 I e panTro4.chr2B 235556780 22 + 247518478 I e hg19.chr2 231178349 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=-3909.000000 s mm10.chr1_GL456221_random 157521 23 + 206961 aaaacaaaCCACTCATCAAATAA s rn5.chr9 92396150 22 + 121549591 aaaa-aaaCCACTCACCAAATAA i rn5.chr9 C 0 C 0 s gorGor3.chr2B 119513128 7 + 131632457 aatgcaa---------------- i gorGor3.chr2B C 0 C 0 s otoGar3.GL873532 28862293 23 - 32117204 aatatagatcacttgcttaagaa i otoGar3.GL873532 I 458 C 0 s ailMel1.GL192536.1 1083743 6 - 2169676 ------------ttactt----- i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17891253 16 + 84719076 --aataaatcacttactt----- i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 28785 0 + 18451090 C e ponAbe2.chr2b 122726022 87 + 135000294 I e canFam3.chr25 42527138 0 + 51628933 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e speTri2.JH393335 4179217 86 - 10418462 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e nomLeu2.GL397366 3697357 22 + 6458163 I e panTro4.chr2B 235556780 22 + 247518478 I e hg19.chr2 231178349 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=-763.000000 s mm10.chr1_GL456221_random 157544 7 + 206961 GACAGAA s rn5.chr9 92396172 7 + 121549591 GACACAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179303 7 - 10418462 gactgac i speTri2.JH393335 I 86 C 0 s equCab2.chr6 17891269 1 + 84719076 -----a- i equCab2.chr6 C 0 C 0 e saiBol1.JH378144 28785 0 + 18451090 C e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28862316 0 - 32117204 C e canFam3.chr25 42527138 0 + 51628933 C e ailMel1.GL192536.1 1083749 0 - 2169676 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94110793 901 + 106825570 I e nomLeu2.GL397366 3697357 22 + 6458163 I e gorGor3.chr2B 119513135 0 + 131632457 C e panTro4.chr2B 235556780 22 + 247518478 I e hg19.chr2 231178349 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=1564.000000 s mm10.chr1_GL456221_random 157551 1 + 206961 A s rn5.chr9 92396179 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179310 1 - 10418462 t i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178349 1 + 243199373 a i hg19.chr2 C 0 C 0 s rheMac3.chr12 94111694 1 + 106825570 a i rheMac3.chr12 I 901 C 0 s saiBol1.JH378144 28785 1 + 18451090 a i saiBol1.JH378144 C 0 C 0 s ailMel1.GL192536.1 1083749 1 - 2169676 a i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891270 1 + 84719076 a i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26078438 1 + 30916457 a i myoLuc2.GL429770 N 0 C 0 e ponAbe2.chr2b 122726022 87 + 135000294 I e otoGar3.GL873532 28862316 0 - 32117204 C e canFam3.chr25 42527138 0 + 51628933 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3697357 22 + 6458163 I e gorGor3.chr2B 119513135 0 + 131632457 C e panTro4.chr2B 235556780 22 + 247518478 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=6184.000000 s mm10.chr1_GL456221_random 157552 7 + 206961 AAGGCTC- s rn5.chr9 92396180 5 + 121549591 AGG--TC- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179311 7 - 10418462 aatcctc- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178350 7 + 243199373 agggact- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556802 7 + 247518478 agggact- i panTro4.chr2B I 22 C 0 s ponAbe2.chr2b 122726109 7 + 135000294 agggact- i ponAbe2.chr2b I 87 C 0 s nomLeu2.GL397366 3697379 7 + 6458163 agggact- i nomLeu2.GL397366 I 22 C 0 s rheMac3.chr12 94111695 7 + 106825570 agggact- i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 28786 7 + 18451090 agggact- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862316 3 - 32117204 ----cct- i otoGar3.GL873532 C 0 C 0 s ailMel1.GL192536.1 1083750 7 - 2169676 -gagactt i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17891271 6 + 84719076 -gagact- i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26078439 6 + 30916457 -gggact- i myoLuc2.GL429770 C 0 C 0 e canFam3.chr25 42527138 0 + 51628933 C e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e gorGor3.chr2B 119513135 0 + 131632457 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=467881.000000 s mm10.chr1_GL456221_random 157559 124 + 206961 TCAACTCAGGGCCTGTGT----------------------------CTAGG-AAGAC----TCACTCTAAG--------------------------ATAATGTCCC---AGAGGCAAAGC--------------CTTCGGGTGG-GGTTCTCAAGGTAGGTCACTGTCTAACCAAAGG------------------------TTCTCAGGTGTTAAACCAGC-AC s rn5.chr9 92396185 145 + 121549591 TCAACTCAGGATCTTTCT----------------------------CTAGG-AA-AC----TCATTGTAAG--------------------------ATAATGACCT---AGAAGTAAAGT--------------CTCAGAATAG-GGTTCTAGAGTTGGGTCATTGTCCAACCAAAGGCGATTGGTC-GG-GTATCCATAGATCCTCAGGTGTTAAACCAGC-AC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179318 219 - 10418462 tgagatcggagcccttgtgatccagtcacttccccacagagattccctctg-aacactgcttcactgtgggccaagccttgacagcatgcacttttcaggacattcc---agatccaaaccacagcaGGGACCCACCCTAAGTAGTGGTCCTGGAGGTGGATCACTGTCTAGCAGAATGGTGATGGGT-GG-ATATTGGTAGTCCCTGGGATGTTATAACAGG-AC i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178357 148 + 243199373 tcatcccagaatgtgctt----------------------------ctggg-ga-at----gcaacctaag--------------------------GTAATGGCCC-CAGGAAGCGAGCT--------------CTGAGGACAG-GATTCTGGAGTTGGATCACTGTCTAGCCCAATGGTGCTGGGC-AGAATATGGATAGCCCCAGAAGTGCTATCACTGA-Gc i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556809 148 + 247518478 tcatcccagaatgtgctt----------------------------ctggg-ga-at----gcaacctaag--------------------------GTAATGGCCC-CAGGAAGCGAGCT--------------CTGAGGACAG-GATTCTGGAGTTGGATCACTGTCTAGCCCAATGGTGCTGGGC-AGAATATGGATAGCCCCAGAAGTGCTATCACTGA-GC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513135 117 + 131632457 -----------------------------------------------------------------cctaag--------------------------GTAATGGCCC-CAGGAAGCGAGCT--------------CTGAGGACAG-GATTCTGGAGTTGGATCACTGTCTAGCCCAATGGTGCTGGGC-AGAATATGGATAGCCCCAGAAGTGCTATCACTGA-Gc i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726116 148 + 135000294 tcatcccagaatgtgctt----------------------------ctggg-ga-at----gcaacctaaA--------------------------GTAACAGCCC-CAGGAAGCGAGCT--------------CTGAGGACAG-GATTCTGGAGTTGGATCACTGTCTAGCCCAATGGTGCTAGGC-AGAATATGGATAGCCCCAGAAGTGCTATCACTGA-GC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697386 148 + 6458163 tcatcccagaatgtgctt----------------------------ctagg-ga-at----gcaacctaag--------------------------GTAATGGCCC-CAGGAAGCAAGCT--------------CTGAAGACAG-GATTCTGGAGTTGGATCACTGTCTAACCCAGTGGTGCTGGGT-GGAATATGGATAGTCCCAGAAGTGCCATCACTGA-GC i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94111702 140 + 106825570 tcgtcccagaatgtgctt----------------------------ctggg-ga-at----gcaacctaag--------------------------GTAATGGCCC-CAGGAAGTGAGCT--------------CT---------GATTCTGGAGTTGGATCACTGTCTAGCCCAATGGTGCTGGGT-GGAATATGGATAGTCCCAGAAGTGCTATCACTGA-GC i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 28793 147 + 18451090 tcatcccagaatctgcct----------------------------ctgag-ga-aa----gcaacctaag--------------------------GGAATGA-GC-TAGGAAGCAGTCT--------------CTGAGGACAG-GACTCTGGAGTTGGATCACTGTCTAGCCCAATGGTGCTGGGT-GGAATATGGACAGTCCCAGGGGTGCTATCACTGA-GC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862319 143 - 32117204 tcatctctggtaatgttt----------------------------ctgggaga-ac----ccaacctaag--------------------------GTAATGGCCCTTAGGAAGCAAGTT--------------CT---------AATTAATGA-TGGGGTCCCTATCTAGCAAAATGGTGATAGGTGGGAATATTGATAATCCCAGGAATGCTATAACTCATGC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527138 148 + 51628933 ttatctcaggctctgctt----------------------------ccaag-ga-ac----ccaacttcag--------------------------GTAATGGTCC-TAGCAAGCAGGCC--------------TTAAGAATGC-AGTTCTGATGTTGGATCATTGCCTAGCCAGATGGTGACAAAC-AGAATGCTGAGAGTCCCTGTGGTGTTATAACAGT-GC i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1083758 146 - 2169676 --atctcagtctctgctt----------------------------ccaag-ga-ac----ctaacttcag--------------------------GTGACGATCC-CAGCAAATGGGCT--------------TTAaggatgg-ggttctagtgttggatcactgcctggccagatggtgacaagc-ggaatgttgatagtcactggggtgttataacagt-gc i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17891277 145 + 84719076 ttacctcagcctctgctt----------------------------ctaga-ga-ac----ccaacataag--------------------------ataACGGACC-TAACAAGCAGGCC--------------CTAAGGATGG-GGCTCTGCACTTGGATCACTGTCTAG-CAGATGGTGACAGGT-GGAATACTGATG--TCCTGGGATGCTGTAACAGT-AC i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26078445 135 + 30916457 tcatttcgggttctgctt----------------------------ctagg-ga-ac----ttaac-------------------------------ataaTAATCC-TAGCAAGAAGGCC--------------CTAAGGGTGG-CATTTGTGAGTTGGATCACTGTCTAGCCAGAGAGTAACAGGA-AGAATATTGATAGTTTCTG--------TAATAGT-GT i myoLuc2.GL429770 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=173734.000000 s mm10.chr1_GL456221_random 157683 91 + 206961 ---------------TGGGG-CCAAATT--------------TTAACCTGTAGAAAGGCATTACAGACTATGTGAGCTACACATAAAGTGGCATATTTGACACAAAGTGG-------------------CATATT---TGATA s rn5.chr9 92396330 72 + 121549591 ---------------TGGGA-CTAAATT--------------TTAACCAGTAGAAAGACATTACAGACTGTGTGAGCGAC-------------------ACACAAAGTGG-------------------CATATT---TGATA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179537 62 - 10418462 ---------------AGTTG-GCAGCCT--------------TTCTACTGTAGAAAG----------CCAGATGAGCTAC-------------------AGGAAAAGAGG-------------------CACACT---AGCTG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178505 63 + 243199373 ---------------agttgcccaaatt--------------ttcacctgtagtaaa----------ttggaagagctgc-------------------aggtcaagagg-------------------taaaat---agctg i hg19.chr2 C 0 C 0 s panTro4.chr2B 235556957 63 + 247518478 ---------------AGTTGCCCAAATT--------------TTCACCTGTAGTAAA----------TTGGAAGAGCTGC-------------------AGGTCAAGAGA-------------------TAAAAT---AGCTG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513252 63 + 131632457 ---------------agttgcccaaatt--------------ttcacctgtagtaaa----------ttggaagagctgc-------------------aggtcaagagg-------------------taaaat---agctg i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726264 82 + 135000294 ---------------AGTTGCCCAAATT--------------TTCACCTGTAGTAAA----------TTAGATGAGCTGC-------------------AGGTCAAGCTATTTTAGTACACCTATGTACTAAAAT---ACCTG i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697534 63 + 6458163 ---------------AGTTGCCCAAATA--------------TTCACCTGTAGTAAA----------TTGGATGAGCTAC-------------------AGGTCAAGAGG-------------------TAAAAT---AGCTG i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94111842 68 + 106825570 ---------------AGTTGCCCAAATT--------------TTCACCTATAGTAAA----------TTGGATGAGCTAC-------------------AGGTCAAGCTA--------------TGTACTAAAGT---AGCTG i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 28940 63 + 18451090 ---------------AGTTGCCCATACT--------------TTCACCTGTAGTTAA----------CTGGATGAGCTAT-------------------AGGTGAAGAGG-------------------TAAAAT---AGCTA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862462 49 - 32117204 ---------------ACTTGCCCAAACT--------------TTCACCTTTGGTAAA----------CTGGTGGAGCTCT-------------------AGG------------------------------------Agctg i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527286 63 + 51628933 ---------------CATTGCCAAAACT--------------TTCACCTGTAGGGAA----------CTGGCCAAGCTAT-------------------AGGGCAAGAGG-------------------CCTACC---AGCTG i canFam3.chr25 C 0 I 16 s ailMel1.GL192536.1 1083904 63 - 2169676 ---------------cattgccaaaact--------------ttcacctgtaggaaa----------ctgggtgagctac-------------------agggggagagg-------------------catacc---agctg i ailMel1.GL192536.1 C 0 I 16 s equCab2.chr6 17891422 62 + 84719076 ---------------AGTTGCC-AAACT--------------TTCACCTGTGGGAAA----------CTGGATGAGATAA-------------------AGCGGAAGAGG-------------------TATAGC---AGCCG i equCab2.chr6 C 0 I 16 s myoLuc2.GL429770 26078580 62 + 30916457 ---------------CATTGAC-AAAAT--------------TTTATCTGTAAGAAA----------CTGGATGATATAG-------------------AGGGAAAGAGG-------------------TATGCC---AACTG i myoLuc2.GL429770 C 0 I 25 s sarHar1.chr4_GL857249_random 22314 109 + 35913 TAGGATTTAATTGAGACTTGGAAAAATTCATGCATTAGAAAGTTAAGGTGAAGGAAA------GATATTGTTTCAGGTAC-------TTAGCACAGC--AAGGGGAAATG-------------------CATGGTTAGAGATA i sarHar1.chr4_GL857249_random N 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450085 543 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=14525.000000 s mm10.chr1_GL456221_random 157774 2 + 206961 GT s rn5.chr9 92396402 2 + 121549591 GT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179599 2 - 10418462 GT i speTri2.JH393335 C 0 I 20 s hg19.chr2 231178568 2 + 243199373 gt i hg19.chr2 C 0 I 19 s panTro4.chr2B 235557020 2 + 247518478 GT i panTro4.chr2B C 0 I 17 s gorGor3.chr2B 119513315 2 + 131632457 gt i gorGor3.chr2B C 0 I 19 s ponAbe2.chr2b 122726346 2 + 135000294 GT i ponAbe2.chr2b C 0 I 19 s nomLeu2.GL397366 3697597 2 + 6458163 GT i nomLeu2.GL397366 C 0 I 19 s rheMac3.chr12 94111910 2 + 106825570 GT i rheMac3.chr12 C 0 I 19 s saiBol1.JH378144 29003 2 + 18451090 GT i saiBol1.JH378144 C 0 I 15 s otoGar3.GL873532 28862511 2 - 32117204 gt i otoGar3.GL873532 C 0 I 23 s felCat5.chrC1 212450628 1 + 221441202 -T i felCat5.chrC1 I 543 I 4800 s canFam3.chr25 42527365 1 + 51628933 -T i canFam3.chr25 I 16 I 4 s ailMel1.GL192536.1 1083983 1 - 2169676 -t i ailMel1.GL192536.1 I 16 I 4 s equCab2.chr6 17891500 2 + 84719076 TT i equCab2.chr6 I 16 I 3 s myoLuc2.GL429770 26078667 2 + 30916457 AT i myoLuc2.GL429770 I 25 I 4 s sarHar1.chr4_GL857249_random 22423 2 + 35913 AT i sarHar1.chr4_GL857249_random C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=96910.000000 s mm10.chr1_GL456221_random 157776 21 + 206961 --GGATGGAG-AAAAGGTCACTGT s rn5.chr9 92396404 22 + 121549591 --GGATGGAGAAAAAGGTCGCTGC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179621 21 - 10418462 --GAAGGGAG-AAAGGGTAACTAT i speTri2.JH393335 I 20 C 0 s hg19.chr2 231178589 21 + 243199373 --gaagtgag-gaaaagtaactat i hg19.chr2 I 19 C 0 s panTro4.chr2B 235557039 20 + 247518478 ---AAGTGAG-GAAAAGTAACTGT i panTro4.chr2B I 17 C 0 s gorGor3.chr2B 119513336 21 + 131632457 --gaagtgag-gaaaagtaactat i gorGor3.chr2B I 19 C 0 s ponAbe2.chr2b 122726367 21 + 135000294 --GAAGTGAG-GAAAAGTAACTAT i ponAbe2.chr2b I 19 C 0 s nomLeu2.GL397366 3697618 21 + 6458163 --GAAGTGAG-GAAAAGTAACTAT i nomLeu2.GL397366 I 19 C 0 s rheMac3.chr12 94111931 21 + 106825570 --GAAGTGAG-GAAAAGTAACTAT i rheMac3.chr12 I 19 C 0 s saiBol1.JH378144 29020 21 + 18451090 --GAAGTGAG-GAAAAGTAACTAT i saiBol1.JH378144 I 15 C 0 s otoGar3.GL873532 28862536 21 - 32117204 --aatgggag-agaaagtaattat i otoGar3.GL873532 I 23 C 0 s canFam3.chr25 42527370 21 + 51628933 --AAAAGGAG-AAATAGTAACTAT i canFam3.chr25 I 4 C 0 s ailMel1.GL192536.1 1083988 21 - 2169676 --aaaaggag-aaatagtaactct i ailMel1.GL192536.1 I 4 C 0 s equCab2.chr6 17891505 21 + 84719076 --AAAGAGAG-AAATAGTAACTGT i equCab2.chr6 I 3 C 0 s myoLuc2.GL429770 26078673 19 + 30916457 --ATAAGaag-gact--taaatgt i myoLuc2.GL429770 I 4 I 1377 s sarHar1.chr4_GL857249_random 22425 21 + 35913 CTGAATTGCA-CAAA--CAACTGT i sarHar1.chr4_GL857249_random C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=247714.000000 s mm10.chr1_GL456221_random 157797 48 + 206961 AAGAAAGAT-GGGGTCTGGTGACACTTGCTG--------CATTGCACTAATAG--ATGG s rn5.chr9 92396426 49 + 121549591 GAGAATGATGGGGGTCTGGTGACACTTGCTA--------CATGGCTTTAATAA--ATGG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179642 48 - 10418462 AAGAAATGT-TGGGTTTGGTGGCTATTGCT----------AATATATTGATAAGCATGA i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178610 58 + 243199373 aagaagtat-gggttttggtggctattgctaagtgccattaatgtcctgaaaagagtaa i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557059 58 + 247518478 AAGAAGTAT-GGGTTTTGGTGGCTATTGCTAAGTGCCATTAATGTCCTGAAAAGAGTAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513357 58 + 131632457 aagaagtat-gggttttggtggctattgctaagtgccattaatgtcctgaaaagagtaa i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726388 58 + 135000294 AAGAAATAT-GGGTTTTGGTGGGTATTACTAAGTGCCATTAATGTCTTGAAAAGAGTAA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697639 58 + 6458163 AAGAAGTAT-GGGTTTTGGTGGCTATTGCTAAGTGCCATTAATGTCCTGAAAAGAGTAA i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94111952 49 + 106825570 AAGAAGTAT-GGGT---------TATTACTAAGTGCCGTTAATGTCTTGAAAAGAGTAA i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29041 58 + 18451090 AATAAGTAT-GGGTTTTGGTGGCTATTGCTAAGTTCCATTAATGTCTTGAAAAGAGTAA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862557 53 - 32117204 gagaacta------gttactaactattgctaagtgctactaatgtgctgaaaagagtaa i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527391 58 + 51628933 AAGAACTGT-GGATTTTGATGGCAATTGCTAAGTGTCACTAATATGTTTAAAAGATTAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1084009 58 - 2169676 aagaaccgt-ggattttgatggctattgctaagtgccactaacatgttgaaaagagtaa i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891526 58 + 84719076 AAGAACTGT-GGATTTGGGTGACTGTTGCTAAGTGCCACTAATGTGCTGAAAAGAGTAA i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26080069 58 + 30916457 AAGAACTGT-GGATTTTGGTGCCTATTGCTAAGTGTGATGAATGTATTGAAAAGAGTAC i myoLuc2.GL429770 I 1377 C 0 s sarHar1.chr4_GL857249_random 22446 48 + 35913 AAGAAATAA-GAAGTCAAAGTGAACTTTTTG--------TATTGTAGTTATAG--TTGA i sarHar1.chr4_GL857249_random C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=22800.000000 s mm10.chr1_GL456221_random 157845 2 + 206961 AT s rn5.chr9 92396475 2 + 121549591 AT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179690 2 - 10418462 AT i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178668 2 + 243199373 at i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557117 2 + 247518478 AT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513415 2 + 131632457 at i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726446 2 + 135000294 AT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697697 2 + 6458163 AT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112001 2 + 106825570 AT i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29099 2 + 18451090 AT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862610 2 - 32117204 at i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527449 2 + 51628933 AT i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1084067 2 - 2169676 at i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891584 2 + 84719076 AT i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26080127 2 + 30916457 AT i myoLuc2.GL429770 C 0 C 0 s sarHar1.chr4_GL857249_random 22494 2 + 35913 AT i sarHar1.chr4_GL857249_random C 0 N 0 s oreNil2.chrLG14 29095344 2 + 34191023 ac i oreNil2.chrLG14 N 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=198229.000000 s mm10.chr1_GL456221_random 157847 54 + 206961 -------ATGAGTTCCTTAGATCGAGCAATCCCAAG--TAATCA--TGAGGAAAGAGTCACTCAT s rn5.chr9 92396477 49 + 121549591 -------ATAAGTCACTTAGATCTAGTAATCCCAAG--TAATCC--CAAGGGA-----CACTCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179692 49 - 10418462 -------ATCAGGT--TTAGATCTATTAATCGCCATTCTAAAGC--Caagagg-----cccttat i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178670 49 + 243199373 -------gaCAGGT--TTAGATCTAGTCGTTACCAGCCTAAGGA--GAAGAGA-----CCCTCAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557119 49 + 247518478 -------GACAGGT--TTAGATCTAGTCGTTACCAGCCTAAGGA--GAAGAGA-----CCCTCAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513417 49 + 131632457 -------gaCAGGT--TTAGATCTAGTCGTTACCAGCCTAAGGA--GAAGAGA-----CCCTCAT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726448 49 + 135000294 -------GACAGGC--TTAGATCTATTCATTACCAGCCTAAAGA--GAAGAGA-----CCCTCAT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697699 49 + 6458163 -------GACAGGT--TTAGATCTAGTCATTACCAACCTAAAGA--GAAGAGA-----CCTTCAT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112003 49 + 106825570 -------GACAGGC--TTAGATCTATTCATCACAAGCCTAAAGA--GAAGAGA-----CCCTCAT i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29101 49 + 18451090 -------GACAGGC--TTACACCTATTCATCACCACCCTAAAGA--GAAGAGA-----CCCTCAT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862612 48 - 32117204 -------gacggac--ttagatctattaatcactgacttaaagc--aaagAGA-----CC-TCAT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527451 47 + 51628933 -------GACAGGC--TTAAGACTATTAATCACCA-CCTAAA-C--ATagaga-----tcctcat i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1084069 47 - 2169676 -------gacaggc--ttaaacctgttaatCACCC-CCTAAA-C--Caagaga-----tcctcat i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891586 48 + 84719076 -------GGCAGGC--TTAAATCTATTAATCACCT-CCTAAAGC--aaagaga-----ccttcat i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26080129 48 + 30916457 -------GATAGAC--TTAAATCCATTAGTCACCA-CCTAAAAC--AAAGAGA-----TCCTCAT i myoLuc2.GL429770 C 0 C 0 s oreNil2.chrLG14 29095346 52 + 34191023 atggGTTTGTGAGT--TCAAACCCAGCAAC------ACTAATGCTGCAAGCAA-----CACTGAT i oreNil2.chrLG14 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=154260.000000 s mm10.chr1_GL456221_random 157901 35 + 206961 A--------------------------TCTGCAGCCATAAGTCAGACTGCAGCAAAAGCAT s rn5.chr9 92396526 35 + 121549591 A--------------------------CCTGCAGCCATAGGCCAGACAGCAATGAAAGCAT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179741 35 - 10418462 a--------------------------tttgcatctggaaggcagacaggaaggaaggcct i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178719 37 + 243199373 A------------------------CACCTGCAGCTGGAAGGCAGACAGCAAGGAATGCCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557168 37 + 247518478 A------------------------CACCTGCAGCTGGAAGGCAGACAGCAAGGAATGCCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513466 37 + 131632457 A------------------------CACCTGCAGCTGGAAGGCAGACAGCAAGGAATGCCT i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726497 35 + 135000294 --------------------------ACCTGGAGCTGGAAGGCAGACAGCAAGGAAGGTCT i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697748 37 + 6458163 A------------------------CACCTGCAGCTGGAAGGCAGACAGCAAGGAAGGCCT i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112052 61 + 106825570 ACCTGCAGCTGGAAGGCAGATTCTTCTCTTACAGCTGGAAGGCAGACAGCAAGGAAGGCCT i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29150 34 + 18451090 G--------------------------CCTGCAGCTGGAA-GCAGACAGCAAGGAAGGTCT i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862660 35 - 32117204 A--------------------------CCTGCAACTGGAAGGTGGATAACAAGGAAGGTCT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527498 35 + 51628933 a--------------------------cccgcaactggaaaacagacagcaaggaaggcct i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1084116 35 - 2169676 a--------------------------cctgcagctggaaagcagacagtaaggaaggcct i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891634 35 + 84719076 a--------------------------cctacaactagaaggcagacggtaatgaaggcct i equCab2.chr6 C 0 C 0 s myoLuc2.GL429770 26080177 26 + 30916457 A--------------------------CATGCAGCTGGAAGGCA---------ATAGTTCT i myoLuc2.GL429770 C 0 I 44064 s anoCar2.chrUn_GL343193 5072111 35 - 14352415 --------------------------ATATAAAGCCTTCCTGCATACTGCAGTGAAAGAAT i anoCar2.chrUn_GL343193 N 0 C 0 s oreNil2.chrLG14 29095398 16 + 34191023 -----------------------------AACTGCTGAAAGGCAT---------------- i oreNil2.chrLG14 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=520584.000000 s mm10.chr1_GL456221_random 157936 149 + 206961 GTATGTGCTGGGCCCTTGTGTTCACAAAGACAGAACTCCCAAGAA--------------------GACTGCA--TTCTAGGTTCAGGA-AGTGTCTTGTGCCAATGTCAGGGT------------------------CCTGAGAC--TCAGA------------------------GTG-AGGACTTTG-AAC--CTGTTT-----------CCCT----GAACCTA-TTTGTCTATGAGAG--- s rn5.chr9 92396561 167 + 121549591 ATGT---CGGACCCCTTGTGATCAGAAAGACAGATCTCCAGAGAA--------------------GACTG----TTCTAGGTTCAGGA-AGTGTCTTGTGCCAATGTCAAGGT------------------------CCTGAGAC--TCAGAGTGGAGCCATGGA-ACAGACATGTGTG-AGGACTTTG-AAT--CTATTT-----------CCCT----GAACCTA-TTTGTTGTTGAGAG--- i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179776 170 - 10418462 gttg---cagg-tcctggttttaagaatggcagaactccaaaaag--------------------gactgga--ttccaagctcaggt-ggtctc-tatgccaagttcaaggc------------------------cctgaaac--tcaaaacggggctatcaaggtagatgcacatg-agaattttg-aactactatac-----------cctc----tgaacca-ctggtcatgaaaaa--- i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178756 173 + 243199373 ATTA---CAGG-CCTTTATTTTACAAAGAGTCAAACTTCAGAGAA--------------------GACTGAA--TTCTAAGCTCAGGATGGTCTCTTATGCCAATGTCAAGGC------------------------CATGAAAC--TCAGCATGGGGCTATCTAGATAGAGGTACCTG-AGAACTTTG-ACT--CCAGAT--------GCCCCCT----GAACTCA-CTGGGCCTACAGAA--- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557205 173 + 247518478 ATTA---CAGG-CCTTCATTTTACGAAGAGTCAAACTTCAGAGAA--------------------GACTGAA--TTCTAAGCTCAGGATGGTCTCTTATGCCAATGTCAAGGC------------------------CTTGAaac--tcagcatggggctatctagatagatgtacctg-agaactttg-act--ccagat--------gccccct----gaactca-ctgggcctacagaa--- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513503 173 + 131632457 ATTA---CAGG-CCTTTATTTTACAAAGAGTCAAACTTCAGAGAA--------------------GACTGAA--TTCTAAGCTCAGGATGGTCTCTTATGCCAATGTCAAGGC------------------------CTTGAAAC--TCAGCATGGGGCTATCTAGATAGATGTACCTG-AGAACTTTG-ACT--CCAGAT--------GCCCCCT----GAACTCA-CTGGGCCTACAGAA--- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726532 173 + 135000294 GGTA---CAGA-CCTG-ATTTTATGAATCACAGAACTTCAGAGAA--------------------CACTGAA--TTCTAAGCTCAGGATGGTCTCTTATGCCAAAGTCAAGGC------------------------CTTAAAAC--TCAGCATGGGGCTATCTAGATAGATGTACATG-AGAACTTTGAACT--CCAGAT--------GCCCCCT----GAACCTA-CTGGGTTTTCAGAA--- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697785 173 + 6458163 ATTA---TAGG-ACTTTATTTTACAAagagtcaaacttcagagaa--------------------gactgaa--ttctaagttcagggtggtctctgatgccaatgtcaaggc------------------------cttgaaac--tcagcatggggctatctagatagatgtacctg-agaactttg-act--ccagat--------gcccgct----gaactca-ctgggcctacagaa--- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112113 172 + 106825570 ATTA---CAGG-CCTT-ATTTTACAAAGAGCCAGACTTCAGAGAA--------------------TAGTGAA--TTCTAAGCTCAGGGTGGTCTCTCATTCCAATGTCAAGGC------------------------CTTGAAAC--TCAGCATGGGGCTATTTAGGTAGATGTACCTG-AGAACTTTA-ACT--CCAGAT--------GCCCCCT----GAACTCA-CTGGGCCTACAGAA--- i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29184 194 + 18451090 GATA---CAGG-CCCTGATTTTATGAATCACAGAACTTTATAGaagactgaatgcagggctcagggactgaa--ttctaatctcagggtggtatctcatgccaaagttaaggc------------------------CCTAAAAC--TCAATATTGGACTATCTAGGTAGATGTACATA-AGAAGTTTAAACT--CCAGAT--------GCCCCCT----GAACCTA-CTGGGTTTGCAGAC--- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862695 175 - 32117204 GGCA---CAGG-CCCTAATCATAAGAATAGCAGAACTTCAGAGAA--------------------GTCTGAA--TCCTAAGCTCAGGATAGTCTCTTATACAGAAGTCAGGGC------------------------CTTGAAAA--TCAGGATGGGGCTA-CTAGGTAGACACACATG-AGAACTTTGAGCT--CCAGAT----------CCCTTAGAAGAAACCA-CTAGGCTTGCAGAA--- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527533 184 + 51628933 ---------gg-cctgaattttaaggatgacagaacatcagagaa--------------------gatggaa--ttctaagctcaaaaaggtctcttattccaaagttagggc--attga-----agggattaaagccctgaaac--tcagaaagaggctctctaggtagatgtacatg-agaactctgaact--ccagat---------ccccct----gaatcca-ctgggcctgcagaa--- i canFam3.chr25 C 0 I 3 s ailMel1.GL192536.1 1084151 188 - 2169676 ---------gg-ccctaattttaagaatggcggaactccagagaa--------------------gactgaa--ttctaagttctatatggtcccttatgccaaagttagggc--actaatgaagaaggagtgaagtcctgaaac--tcagaaaggagctctctaggaagatgtgcatg-agaactctgaact--ccagat----------cccct----gaaccca-ctgggcctgcagaa--- i ailMel1.GL192536.1 C 0 I 3 s equCab2.chr6 17891669 195 + 84719076 ggca---cagg-ccctaatgttaagcatggcataatttcagagat--------------------gtctgca--ttcaaggctcaggatggtcacttgtgcgaaagtcagggc--cccaataaagaaggagtgaaggtctgaaac--tcagaatggggctttctgtgcagatgcacatg-agaactctgaact--ccagat---------cccctt----gaaccca-ctgggcctgcagaa--- i equCab2.chr6 C 0 I 3 s anoCar2.chrUn_GL343193 5072146 143 - 14352415 -------------ATCTGTGTTGGGATT-------CTTTCTTAAA--------------------CAGTGAAGTTCCTA----------CATTGCTTAGGTGAATCTGAGGGCTAGCTGG-----------------TTTGTGGC--TCGGG--GGCACTACC-----------------AGTACTCTG---C--TGAGATAGAGGAAAATACCTG----ACACCCT-TTATATTTGCACT---- i anoCar2.chrUn_GL343193 C 0 C 0 s oreNil2.chrLG14 29095414 142 + 34191023 -----------------GCTACATACAGTTTCTGCATCCATAAGA--------------------GCC---A--TGCCAGGTCA---------------GCTGGCGTCTGAGT------------------------GATGTAACTTTTAACATCAGATGGTGAGGACAGGACTCCCTGCAGTActttg-tga--ttgtgt-------------------aaactggCCTGAGCTTATATAAAAG i oreNil2.chrLG14 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 138613 1744 + 176633 I a score=3735.000000 s mm10.chr1_GL456221_random 158085 1 + 206961 G s rn5.chr9 92396728 1 + 121549591 A i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179946 1 - 10418462 g i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178929 1 + 243199373 A i hg19.chr2 C 0 I 2 s panTro4.chr2B 235557378 1 + 247518478 A i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119513676 1 + 131632457 A i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122726705 1 + 135000294 A i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3697958 1 + 6458163 a i nomLeu2.GL397366 C 0 I 2 s rheMac3.chr12 94112285 1 + 106825570 A i rheMac3.chr12 C 0 I 2 s saiBol1.JH378144 29378 1 + 18451090 A i saiBol1.JH378144 C 0 I 2 s micMur1.scaffold_3075 140357 1 + 176633 g i micMur1.scaffold_3075 I 1744 I 5814 s otoGar3.GL873532 28862870 1 - 32117204 A i otoGar3.GL873532 C 0 I 1 s canFam3.chr25 42527720 1 + 51628933 g i canFam3.chr25 I 3 C 0 s ailMel1.GL192536.1 1084342 1 - 2169676 a i ailMel1.GL192536.1 I 3 C 0 s anoCar2.chrUn_GL343193 5072289 1 - 14352415 G i anoCar2.chrUn_GL343193 C 0 C 0 s oreNil2.chrLG14 29095556 1 + 34191023 G i oreNil2.chrLG14 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e equCab2.chr6 17891864 3 + 84719076 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I a score=45252.000000 s mm10.chr1_GL456221_random 158086 25 + 206961 A----CCCTTTACTCTTCCTT-GCAATGAA s rn5.chr9 92396729 25 + 121549591 A----TCCTTTACTCTTTCTT-GGAAGAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179947 27 - 10418462 aa--tcccccttcccctcgtt-ggaagagg i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178932 25 + 243199373 ----TCCTCTTTCCCCTTGTT-GGAAGAAT i hg19.chr2 I 2 C 0 s panTro4.chr2B 235557381 25 + 247518478 ----TCCTCTTTCCCCTTGTT-GGAAGAAT i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119513679 25 + 131632457 ----TCCTCTTTCCCCTTGTT-GGAAGAAT i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122726708 25 + 135000294 ----TCCTCTTGCCCCTTGTT-GGAAGAGA i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3697961 25 + 6458163 ----tcctcttgccccttgtt-ggaagaat i nomLeu2.GL397366 I 2 C 0 s rheMac3.chr12 94112288 25 + 106825570 ----TCCTCTTGCCCCTTGTT-GGAAGAGA i rheMac3.chr12 I 2 C 0 s saiBol1.JH378144 29381 25 + 18451090 ----TCTTTCTGCCCCTTTTT-GGAAGAGA i saiBol1.JH378144 I 2 C 0 s otoGar3.GL873532 28862872 26 - 32117204 ----CTCTCCTTCCCCTGGTTGGGAAGGGA i otoGar3.GL873532 I 1 C 0 s canFam3.chr25 42527721 22 + 51628933 -----actccttccccttatt-tggagg-- i canFam3.chr25 C 0 I 2 s ailMel1.GL192536.1 1084343 22 - 2169676 -----actcctgccCCTGCTT-TGGAGA-- i ailMel1.GL192536.1 C 0 I 2 s equCab2.chr6 17891867 22 + 84719076 -----actcctacccctTGTT-GGAAGA-- i equCab2.chr6 I 3 I 2 s anoCar2.chrUn_GL343193 5072290 22 - 14352415 -------AACATCCACTTCTT-CCAAGCAA i anoCar2.chrUn_GL343193 C 0 I 4 s oreNil2.chrLG14 29095557 25 + 34191023 -AGCAGCTACTCATCCGTAGT-GTCAG--- i oreNil2.chrLG14 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=9938.000000 s mm10.chr1_GL456221_random 158111 2 + 206961 GA s rn5.chr9 92396754 2 + 121549591 GA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179974 2 - 10418462 ga i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178957 2 + 243199373 GA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557406 2 + 247518478 GA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513704 2 + 131632457 GA i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726733 2 + 135000294 GA i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697986 2 + 6458163 ga i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112313 2 + 106825570 GA i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29406 2 + 18451090 GA i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862898 2 - 32117204 GA i otoGar3.GL873532 C 0 C 0 s anoCar2.chrUn_GL343193 5072316 2 - 14352415 TA i anoCar2.chrUn_GL343193 I 4 C 0 s oreNil2.chrLG14 29095582 2 + 34191023 CA i oreNil2.chrLG14 C 0 C 0 e canFam3.chr25 42527743 2 + 51628933 I e ailMel1.GL192536.1 1084365 2 - 2169676 I e pteVam1.scaffold_9232 51826 2910 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e equCab2.chr6 17891889 2 + 84719076 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=-10217.000000 s mm10.chr1_GL456221_random 158113 3 + 206961 GC----------C s rn5.chr9 92396756 3 + 121549591 GC----------C i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179976 5 - 10418462 acta--------c i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178959 8 + 243199373 GCTACCA-----C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557408 8 + 247518478 GCTACCA-----C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513706 8 + 131632457 GCTACCA-----C i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726735 8 + 135000294 GCTACCA-----C i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697988 8 + 6458163 gctacca-----c i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112315 8 + 106825570 GCTACCA-----C i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29408 8 + 18451090 GCTACCG-----C i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862900 13 - 32117204 GTTACCACTCCTC i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527745 3 + 51628933 -----ga-----c i canFam3.chr25 I 2 C 0 s ailMel1.GL192536.1 1084367 3 - 2169676 -----GA-----C i ailMel1.GL192536.1 I 2 C 0 s equCab2.chr6 17891891 3 + 84719076 -----GA-----C i equCab2.chr6 I 2 I 1 s anoCar2.chrUn_GL343193 5072318 3 - 14352415 -----GA-----C i anoCar2.chrUn_GL343193 C 0 N 0 s oreNil2.chrLG14 29095584 3 + 34191023 GCT---------- i oreNil2.chrLG14 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=-6373.000000 s mm10.chr1_GL456221_random 158116 4 + 206961 -ATCT s rn5.chr9 92396759 4 + 121549591 -ATCT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179981 4 - 10418462 -accc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178967 4 + 243199373 -CCCC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557416 4 + 247518478 -CCCC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513714 4 + 131632457 -CCCC i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726743 4 + 135000294 -CCCC i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3697996 4 + 6458163 -cccc i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112323 4 + 106825570 -CCCC i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29416 4 + 18451090 -CCCC i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862913 4 - 32117204 -TCCT i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527748 3 + 51628933 -tct- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1084370 3 - 2169676 -CTT- i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891895 3 + 84719076 -CCT- i equCab2.chr6 I 1 C 0 s oreNil2.chrLG14 29095587 4 + 34191023 GTCC- i oreNil2.chrLG14 C 0 C 0 e pteVam1.scaffold_9232 51826 2910 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=6620.000000 s mm10.chr1_GL456221_random 158120 2 + 206961 AT s rn5.chr9 92396763 2 + 121549591 GT i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179985 2 - 10418462 at i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178971 2 + 243199373 AC i hg19.chr2 C 0 I 3 s panTro4.chr2B 235557420 2 + 247518478 AC i panTro4.chr2B C 0 I 3 s gorGor3.chr2B 119513718 2 + 131632457 AC i gorGor3.chr2B C 0 I 3 s ponAbe2.chr2b 122726747 2 + 135000294 AC i ponAbe2.chr2b C 0 I 3 s nomLeu2.GL397366 3698000 2 + 6458163 ac i nomLeu2.GL397366 C 0 I 3 s rheMac3.chr12 94112327 2 + 106825570 AC i rheMac3.chr12 C 0 I 3 s saiBol1.JH378144 29420 2 + 18451090 AC i saiBol1.JH378144 C 0 I 3 s otoGar3.GL873532 28862917 2 - 32117204 AC i otoGar3.GL873532 C 0 I 3 s canFam3.chr25 42527751 2 + 51628933 ag i canFam3.chr25 C 0 I 1 s ailMel1.GL192536.1 1084373 2 - 2169676 CC i ailMel1.GL192536.1 C 0 I 1 s equCab2.chr6 17891898 2 + 84719076 AC i equCab2.chr6 C 0 I 1 s pteVam1.scaffold_9232 54736 2 + 60856 AG i pteVam1.scaffold_9232 I 2910 I 5204 s oreNil2.chrLG14 29095591 2 + 34191023 AT i oreNil2.chrLG14 C 0 C 0 e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=24617.000000 s mm10.chr1_GL456221_random 158122 6 + 206961 GTCCCC s rn5.chr9 92396765 6 + 121549591 GTTCCC i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179987 3 - 10418462 ---ccc i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178976 6 + 243199373 ACTCCC i hg19.chr2 I 3 C 0 s panTro4.chr2B 235557425 6 + 247518478 ACTCCC i panTro4.chr2B I 3 C 0 s gorGor3.chr2B 119513723 6 + 131632457 ACTCCC i gorGor3.chr2B I 3 C 0 s ponAbe2.chr2b 122726752 6 + 135000294 ACTCCC i ponAbe2.chr2b I 3 C 0 s nomLeu2.GL397366 3698005 6 + 6458163 ATTCCC i nomLeu2.GL397366 I 3 C 0 s rheMac3.chr12 94112332 6 + 106825570 ACTCCC i rheMac3.chr12 I 3 C 0 s saiBol1.JH378144 29425 6 + 18451090 ACTCCC i saiBol1.JH378144 I 3 C 0 s otoGar3.GL873532 28862922 6 - 32117204 AGCCCT i otoGar3.GL873532 I 3 C 0 s canFam3.chr25 42527754 6 + 51628933 acctca i canFam3.chr25 I 1 C 0 s ailMel1.GL192536.1 1084376 6 - 2169676 ACCCCA i ailMel1.GL192536.1 I 1 C 0 s equCab2.chr6 17891901 6 + 84719076 CTCCCA i equCab2.chr6 I 1 C 0 s oreNil2.chrLG14 29095593 6 + 34191023 GTCCCC i oreNil2.chrLG14 C 0 N 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=385078.000000 s mm10.chr1_GL456221_random 158128 135 + 206961 --CATCTAGCTTGAATAAAGACT------ACACAGGGGATTCCCAG-CATAGCTCAG-TAGACAAACCAAGGTTAGGGCTGGAAGCCATG-TGAAAGGGGCCTCACATTAAAGGAG---------TG-----ACAAGCCCA-GCCTACAGGAGAGGCATGG s rn5.chr9 92396771 122 + 121549591 --TATCTTGCTTGAATA------------------GGGCCTCCCAG-ATTGGCTCAG-TGGACAAATCAAGTATGGGGCTGGAAGGAATG-TGAGAGGGGTCACACAATAAAGGAG---------TG-----AGAAACCCA-GCAGACAGGAGAGG-GTAG i rn5.chr9 C 0 C 0 s speTri2.JH393335 4179990 145 - 10418462 --catcttgcttaaatgaagactttaagcatgcggaggcctctcTG-CATGACCCAACTGGACAAACTATGGGTGGGGCTGCAAGT--TG-AAAGAGGGTTTATATTTCAAAGGAGATGGAGG-TTG-----GCCAACATT-ACCAACAGGAGCTA---GG i speTri2.JH393335 C 0 C 0 s hg19.chr2 231178982 141 + 243199373 --GATTTTTCTAGAAGGAAGACT------GTGTAGAGACCGCTCAG-GACAATGCAAGTGAACA-GTCATGGGCAGGGCGGCAaag--tgaagagagcgtttatcctccgaaggagctgtaggactg-----gccagcgtgcatcagcaggagcaa---gg i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557431 141 + 247518478 --GATTTTTCTAGAAGGAAGACT------GTGTAGAGACCGCTCAG-GACAATGCAAGTGAACA-GTCATGGGCAGGGCGGCAaag--tgaagagagcgtttatcctccgaaggagctgtaggactg-----gccagcttgcatcagcaggagcaa---gg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513729 141 + 131632457 --AATTTTTCTAGAAGGAAGACT------GTGTAGAGACCGCTCAG-GACAACGCAAGTGAACA-GTCATGGGCAGGGCGGCAaag--tgaagagagcgtttaccctccgaaggagctgtaggactg-----gccagcgtgcatcagcaggagcaa---gg i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726758 141 + 135000294 --AATTTTTCTGGAATGAAGACT------GTGTAGAGACCACTCAG-GACAAAGCAAGTGAACA-GTCATGGGCAGGGCGGCAaag--tgaagagagggtttatcctccgaaggagctgtaggactg-----gccagcgtgcatcagcaggagcaa---gg i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3698011 141 + 6458163 --GATTTTTGTAGAATGAAGACT------GTGTAGAGACCGCTCAG-GACAATGCAAGTGAACA-GTCATGGGTAGGGCGGCAaag--tgaagaaagcgtttatcctccgaaggagctgtaggactg-----gccagcatgcatcagcagaagcac---ag i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112338 141 + 106825570 --GATTTTTCTAGAATGAAGACT------ATGTAGAGACTGCTCAGTGACAATGCAAATGAAGA-GTCCTGGGTAGGGCTGCAAAG--TGAAGAGAGCGTTCATCCTCCGAAGGAGCTGTAGGACTG-----GCCAGC-TGCATCAGCAGGAGCGA---GG i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29431 141 + 18451090 --AATTTTTCTGGAATGAAGACT------ATGTTGATACCGCTCAG-GACAATGCAAGCGGAAG-GTCCTGGGCCAGGCTGCAAAG--TGAAGAGCACGCGTGTCctctgaagcagctgtaggactg-----gccagtgtgcatcagcaggagcga---gg i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28862928 146 - 32117204 --CATTTTGCCTGAATGAAGACT------GTGCAGAAGCCtctcgg-tataacctgactaggcaggtcctgggtggggatgcgagg--tgaagagggggttcatactgcaaag-agctgcagggcagggcctgccaatatgggtcagcaggagctg---ga i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527760 142 + 51628933 --cttcttgcctgaatagaaact------atgccaagtagcctcAG-CATGCCCTGACTAAGAATGTCCTATGTGGGTCGGCTAGG--TGAAGAGAGGGTTTTTAGTCCAATGGCACTGTAGGACTG-----GCTAACATGTACGAGCAGGTGCTA---GG i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1084382 140 - 2169676 --CTTCTTGCCTGAATGAGGACA------ATGCAGAGTAGCCGTGG-CATGCCCTGACTGGGAATGTCCTGTGTGGGGCTGCTAGG--AGAAGAGA--GTTTCTAGGCCAATGGCGCTGTAGGACCG-----GTGAACGCGTACCAGCTGGTGCCA---GG i ailMel1.GL192536.1 C 0 C 0 s equCab2.chr6 17891907 143 + 84719076 ACCATCTTGCCTGAATGAAGACT------ATGTGGAGTCCTCTCAG-CATGACCCAGCTGGGCAAGTTCTGGGTTGTCCTGCTAGC--CAAAGAGAGGGTTTCTACTCCAATGGAGCTCCAGTATTG-----GCCAACATG-GCTCTTTGAGGCTT---GG i equCab2.chr6 C 0 N 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=180336.000000 s mm10.chr1_GL456221_random 158263 49 + 206961 AGATTGTGTTTGGGTTTAGATACTGGAT-----AAAGAAAGCTGGAAAACTAAA s rn5.chr9 92396893 47 + 121549591 GGGTTGTGGTT-GGTCTAGATACTGGAT-----AAAGAAAGCTGG-AAACTAAA i rn5.chr9 C 0 C 0 s speTri2.JH393335 4180135 48 - 10418462 AGATTG------GTAGTAGATCCCGGATCAAGAAAGGAAAGATGTAAAACTAGA i speTri2.JH393335 C 0 N 0 s hg19.chr2 231179123 49 + 243199373 agattgtgtctgggagtggatcctggtc-----caggaagggtgaaatgtgaaa i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557572 49 + 247518478 agattgtgtctgggagtggatcctggtc-----caggaagggtgaaatgtgaaa i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513870 49 + 131632457 agattgtgtctgggagtggatcctggtc-----caggaagggtgaaatgtgaaa i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726899 49 + 135000294 agattgtgtctgggagtggatcctggtc-----caggaagggtgaaatgtgaaa i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3698152 49 + 6458163 agattgtgtctgggagtggatcctggtc-----caggaagggtgaaatatgaaa i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112479 49 + 106825570 AGATTGTGTCTGGGAGTGGATCCTGGTC-----CAGGAAGGGCGAAATGTGAAA i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29572 48 + 18451090 agattgtgtttgggaagggatcctggtc-----caggaaggg-aaaatatgaaa i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28863074 49 - 32117204 acattgtgtctgcaaatggatcctggat-----ccagaaaggtaaaatataaga i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527902 48 + 51628933 GGATTATGTCTGGAAGTGGATCCTAAAT-----GAAGAAAGG-GGAATGTGAAA i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1084522 48 - 2169676 GGATTGTGTCTGGGAGTGGATCCTAAAT-----GAAGAAAGG-GGAATAGGAAA i ailMel1.GL192536.1 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=8450.000000 s mm10.chr1_GL456221_random 158312 4 + 206961 CTGG- s rn5.chr9 92396940 4 + 121549591 CTGG- i rn5.chr9 C 0 C 0 s hg19.chr2 231179172 4 + 243199373 ccag- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557621 4 + 247518478 ccag- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513919 4 + 131632457 ccag- i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726948 4 + 135000294 ccag- i ponAbe2.chr2b C 0 C 0 s nomLeu2.GL397366 3698201 4 + 6458163 ccag- i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112528 4 + 106825570 CCAG- i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29620 4 + 18451090 ccag- i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28863123 4 - 32117204 ctgg- i otoGar3.GL873532 C 0 C 0 s canFam3.chr25 42527950 3 + 51628933 -TGG- i canFam3.chr25 C 0 C 0 s ailMel1.GL192536.1 1084570 4 - 2169676 -CTGG i ailMel1.GL192536.1 C 0 N 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=15497.000000 s mm10.chr1_GL456221_random 158316 8 + 206961 -CTGACAGA s rn5.chr9 92396944 8 + 121549591 -TTGACAGA i rn5.chr9 C 0 C 0 s hg19.chr2 231179176 8 + 243199373 -atacgtga i hg19.chr2 C 0 C 0 s panTro4.chr2B 235557625 8 + 247518478 -atacgtga i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119513923 8 + 131632457 -atacgtga i gorGor3.chr2B C 0 I 2 s ponAbe2.chr2b 122726952 8 + 135000294 -ataagtga i ponAbe2.chr2b C 0 I 2 s nomLeu2.GL397366 3698205 8 + 6458163 -ataagtga i nomLeu2.GL397366 C 0 C 0 s rheMac3.chr12 94112532 8 + 106825570 -ATAAGTGA i rheMac3.chr12 C 0 I 2 s saiBol1.JH378144 29624 8 + 18451090 -ataagtga i saiBol1.JH378144 C 0 I 2 s otoGar3.GL873532 28863127 8 - 32117204 -gtaaggga i otoGar3.GL873532 C 0 I 2 s canFam3.chr25 42527953 9 + 51628933 AAGAGGAGA i canFam3.chr25 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=1560.000000 s mm10.chr1_GL456221_random 158324 1 + 206961 G s rn5.chr9 92396952 1 + 121549591 G i rn5.chr9 C 0 C 0 s panTro4.chr2B 235557635 1 + 247518478 a i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119513933 1 + 131632457 a i gorGor3.chr2B I 2 C 0 s ponAbe2.chr2b 122726962 1 + 135000294 a i ponAbe2.chr2b I 2 C 0 s nomLeu2.GL397366 3698213 1 + 6458163 g i nomLeu2.GL397366 C 0 I 91819 s rheMac3.chr12 94112542 1 + 106825570 A i rheMac3.chr12 I 2 C 0 s saiBol1.JH378144 29634 1 + 18451090 a i saiBol1.JH378144 I 2 C 0 s otoGar3.GL873532 28863137 1 - 32117204 a i otoGar3.GL873532 I 2 C 0 s canFam3.chr25 42527962 1 + 51628933 A i canFam3.chr25 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e hg19.chr2 231179184 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=15749.000000 s mm10.chr1_GL456221_random 158325 8 + 206961 TTATCAAT s rn5.chr9 92396953 8 + 121549591 TTAttcct i rn5.chr9 C 0 C 0 s panTro4.chr2B 235557636 8 + 247518478 ttattgac i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119513934 8 + 131632457 ttattgac i gorGor3.chr2B C 0 C 0 s ponAbe2.chr2b 122726963 8 + 135000294 ttattgac i ponAbe2.chr2b C 0 C 0 s rheMac3.chr12 94112543 8 + 106825570 TTATTGAC i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 29635 8 + 18451090 ttattgat i saiBol1.JH378144 C 0 C 0 s otoGar3.GL873532 28863138 8 - 32117204 ttgtcaat i otoGar3.GL873532 C 0 N 0 s canFam3.chr25 42527963 8 + 51628933 TTGTTGAT i canFam3.chr25 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e hg19.chr2 231179184 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=1050.000000 s mm10.chr1_GL456221_random 158333 1 + 206961 A s rn5.chr9 92396961 1 + 121549591 t i rn5.chr9 C 0 C 0 s panTro4.chr2B 235557644 1 + 247518478 a i panTro4.chr2B C 0 I 4053 s gorGor3.chr2B 119513942 1 + 131632457 a i gorGor3.chr2B C 0 I 3567 s ponAbe2.chr2b 122726971 1 + 135000294 a i ponAbe2.chr2b C 0 N 0 s rheMac3.chr12 94112551 1 + 106825570 A i rheMac3.chr12 C 0 I 1928 s saiBol1.JH378144 29643 1 + 18451090 a i saiBol1.JH378144 C 0 I 4833 s canFam3.chr25 42527971 1 + 51628933 A i canFam3.chr25 C 0 I 5 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e hg19.chr2 231179184 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=5052.000000 s mm10.chr1_GL456221_random 158334 132 + 206961 GTTTAAAtttttaaaaaactgattcttggtgaatgtcccatcatgcactacaattcccactcatcttccagtcctgtcctatccccctctaccctggcaacctcccccgcccccaaagaaaagaaaacaatg s rn5.chr9 92396962 119 + 121549591 tttaaatgtttt--tttattgattcctggcgaatt-----tcatgcactacaatt-ccagtcatcttgcagaccctgcctattcccctccacccttgcaatctc-----tccccaaagaaaacaaaacaatg i rn5.chr9 C 0 I 138 e saiBol1.JH378144 29644 4833 + 18451090 I e canFam3.chr25 42527972 5 + 51628933 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119513943 3567 + 131632457 I e panTro4.chr2B 235557645 4053 + 247518478 I e hg19.chr2 231179184 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=18924.000000 s mm10.chr1_GL456221_random 158466 333 + 206961 acaacaaaaacaatcttgccatgaaagctg--------cagtgtgtcacacagtttacacactatcc-aaacagctcttcttgcaaatgttcattgcaatgaacatttggtcattggtttgattcgaagcctctggc-tctgctctaccatcaatactggatcctccccaggatgcatctcagatatcctgttgttgccttgtgtcatggagatcctgcagctttggaagagcagcactgatccattcacctgctccagcagttcatagctggggtagatgatggggttggtcaggtcaaagccctgtatctgggcctg-gtggtagctgagttggttagcctg s rn5.chr9 92397219 334 + 121549591 acaacaaaaaccatcctgccttgaaacttgcagtgcaccagtgtatcacatgctatatacactattgaaaacaacttttcttgcaaacgctcatttcattgaa-------tcattggtctggttcaaagcctctggcttctgttccaccatcaatactggatcctcgttgggaaacat-tcaaacattttgttgttgccttaggtcatggagatcttacagctttggaacagcagcactggtctcttcacatgctccaggagttc-taggt-aggtagatgatggggtgggtcaggtcaaagctccgtatctggacctgtgtggtagctgagttggtcagcctg i rn5.chr9 I 138 I 339 e saiBol1.JH378144 29644 4833 + 18451090 I e canFam3.chr25 42527972 5 + 51628933 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119513943 3567 + 131632457 I e panTro4.chr2B 235557645 4053 + 247518478 I e hg19.chr2 231179184 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=773.000000 s mm10.chr1_GL456221_random 158799 8 + 206961 gcaCCCAT s rn5.chr9 92397892 8 + 121549591 gcacccaT i rn5.chr9 I 339 C 0 e saiBol1.JH378144 29644 4833 + 18451090 I e canFam3.chr25 42527972 5 + 51628933 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119513943 3567 + 131632457 I e panTro4.chr2B 235557645 4053 + 247518478 I e hg19.chr2 231179184 0 + 243199373 C e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=2094.000000 s mm10.chr1_GL456221_random 158807 17 + 206961 GAGTTATCAACACTTAA s rn5.chr9 92397900 17 + 121549591 GAGTTATCAACAGTTAA i rn5.chr9 C 0 C 0 s hg19.chr2 231179184 17 + 243199373 gaattattgacaaaagg i hg19.chr2 C 0 C 0 e saiBol1.JH378144 29644 4833 + 18451090 I e canFam3.chr25 42527972 5 + 51628933 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119513943 3567 + 131632457 I e panTro4.chr2B 235557645 4053 + 247518478 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=21216.000000 s mm10.chr1_GL456221_random 158824 87 + 206961 GTGTTCTTCTGTGCTGTAGAAGCTAATCAGTCTGGTGATGGC-AAGGGTCATCGGTCTAGGCTGTCCCTGGGCAGCTCCTGTATGCTC s rn5.chr9 92397917 88 + 121549591 ATGTTCTTCTGTGCTGTAGAATCTAATCAATCTGGTGATGGCCAAGGGTTATGAATCTAGGCTGTCCCTGGGCAGCTCCTGAATAGCC i rn5.chr9 C 0 C 0 s hg19.chr2 231179201 88 + 243199373 gcaagcttcgctaccacagagtttaactagcctggcatgggccaaaggtgatgattctgatatactcctgggtggctcctagagactt i hg19.chr2 C 0 C 0 s canFam3.chr25 42527977 88 + 51628933 GCACTCTCCTGTGCCATAGAACTTAGTTAGCTTGACAAGGGCCAAAGGTGATGGTTCTGATATGTTTCTGGGTGGCTTTTAGAGGCTT i canFam3.chr25 I 5 I 76 e saiBol1.JH378144 29644 4833 + 18451090 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119513943 3567 + 131632457 I e panTro4.chr2B 235557645 4053 + 247518478 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=2136.000000 s mm10.chr1_GL456221_random 158911 67 + 206961 CTCCT-ATTTTCAGCACACATT-GATGAAGT-GCTGCTTCATTATTGGAACCATGACCACAGA----------------CTCAGGG s rn5.chr9 92398005 67 + 121549591 TTCAT-AGTTCCAGAACACTTT-AATAAAGT-GCTGCTTCATTAATGGAGCCATGACCAGAGA----------------CTCAGGG i rn5.chr9 C 0 C 0 s hg19.chr2 231179289 86 + 243199373 agtataagccatggtacacattaaatcaagtggaagcagagataccagaactactgtggcagagtctggaaaagtgggtcccaagg i hg19.chr2 C 0 C 0 e saiBol1.JH378144 29644 4833 + 18451090 I e canFam3.chr25 42528065 76 + 51628933 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119513943 3567 + 131632457 I e panTro4.chr2B 235557645 4053 + 247518478 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=8138.000000 s mm10.chr1_GL456221_random 158978 290 + 206961 TTACAAATCTAACTGAAGTAGTGAGATGAGTCTACTCTCTAGTACTGGAGAATAGCCCATGAGATAGATGACCGTGTTCCTT---AGGG-----TCACTCAGAGA---CATGAACTTAATGAGGTGATCAGGAA--CACTGCTGGGATTAT-GAGCATCCTTGATCAGCTCAGCACTGGCTGCTCTCTGAAGGATGGAACAATGGTGAGACCATC-TCTCAATTCCTATTTCTATAGTAAC-AATAGAAAGATTCGGTTCCAGATAACCAGA-----------ATCACTCAACTGTCGCAGCCAGACTAAGTGCTTT s rn5.chr9 92398072 259 + 121549591 ACACAAATCTAACAGAAGTGATAAGATGACTC----------TTATGGAAAATGGGTCTGTA---AGATGACTCTGCTCTTC---ATGG-----CCACTTAGATG---CATGAACATAATGAGTTGATCAGG-----GCTGCTGGGTTCAT-GAGCATCCTGGATC----------------CTCTCTGAATGATGGAATAATGGTAGGATCATCTTCCTAGTTACTGCTTCCATAATAGC-AATAGAAAGATTAGGTTACAGGTAACCAGA-----------ATCACTCAACTGTTGTGGCCAGATTAAGTGATTT i rn5.chr9 C 0 C 0 s hg19.chr2 231179375 310 + 243199373 atagaga---agttggtgtgctagaatgactctgcactctacaactggagaatccatccatc---aggtgactgagttcctcctaaggggaacactactaatgtgtctcagacactaactaaagggagaaggaatgcactgctgagggggcagcacatccttgagaagctcaatggtggctgccccctgcaagctggaataatgctagggatgtt-ttatagaactggatcccccagtagtgagtaaaatgaaagagttccagcataacagaggccaagaggcagcatttaactgtgagggcaagataaagtaattt i hg19.chr2 C 0 C 0 s canFam3.chr25 42528141 186 + 51628933 CTAAAAACCTAG-TGAACTG--GACATGGCTCTACTCTCTATAGCTGGAAAACCCATCCTTC---AGATGACT--GTTCCT----AGGA-----GGCTTCAGAGA---TGCTAACTTAACATGGTGATAAAGAACACACTGCTAAGAGGGC---------------------------------------AAGATGACGTAAC-------------TTATGG--------------------AATGGG--------------------CAGC-----------AAGATTAAAATG--ACAGCCAGAT------GTCT i canFam3.chr25 I 76 C 0 e saiBol1.JH378144 29644 4833 + 18451090 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119513943 3567 + 131632457 I e panTro4.chr2B 235557645 4053 + 247518478 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=7636.000000 s mm10.chr1_GL456221_random 159268 127 + 206961 CT----------------GTAGAGAGACAGGTAG--AGAC------------------------------------------------CTAATGCTACTGAAGGCAGGACAACAGGGCAACCTATAAAGTTACTGCTTTATACCTA---TCAAAAGAGTGGTGGGCAAAGAG----------GGCACATGGTGG---AAGTCAGCTATC s rn5.chr9 92398331 175 + 121549591 CC----------------ATAGAGAGACAGGTGG--AGACCTTGTCTGTAGGTATCAATGCAGACAGCTA---ATAGGCCATACCTAGCTAACGTTACTGCAGTCAGGACAGCAGGGCAACCCATAAGCATACTGCTTCATACATATACTCAAAAGAGTGGTGGGAAAAGAG----------GGCACATGGTGG---AAGTTGGCTATC i rn5.chr9 C 0 C 0 s hg19.chr2 231179685 186 + 243199373 ccctaaggggcatgaatgttagagtgacagctgg-aaggcctggcctgtaggtatctatgaagacagacatgcatggat---------atgctgttcctataggcaagatagatgggcagctgacaaggatattgctttagacatataatcaaaaaagattggacatcaatg----------agcagaatgctg---aggtcagctctc i hg19.chr2 C 0 I 2889 s canFam3.chr25 42528327 128 + 51628933 CT--------------------AGAgacaggtaataggac------------------------------------------------atggtgttcttataggtaagacagatgggcagccaacaaggatatcgcttcatatataccctcaaaagcgattaaaaataaatg----------atctgatagctg---agttcagctgcc i canFam3.chr25 C 0 I 1 s xenTro3.GL173141 778111 136 + 862435 ct----------------gTATACTGCCAAGTTG--AGAC------------------------------------------------TTAACCCCACTCACAATTGGACAACCAGGCAGATTAACTGGATTTTGGGTAATAGGTA-----AAAAAAAATGTGAACCCTGGGATGCCATACAGGCATAAAGTGGGGAAGGCAATATA-- i xenTro3.GL173141 N 0 C 0 e saiBol1.JH378144 29644 4833 + 18451090 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119513943 3567 + 131632457 I e panTro4.chr2B 235557645 4053 + 247518478 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=2025.000000 s mm10.chr1_GL456221_random 159395 12 + 206961 CTATTAAAAGCC s rn5.chr9 92398506 12 + 121549591 CTAATAAAAGCC i rn5.chr9 C 0 I 5305 s canFam3.chr25 42528456 12 + 51628933 caatgaaaaacc i canFam3.chr25 I 1 C 0 s xenTro3.GL173141 778247 12 + 862435 TGATTGGCAGCT i xenTro3.GL173141 C 0 I 1 e saiBol1.JH378144 29644 4833 + 18451090 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119513943 3567 + 131632457 I e panTro4.chr2B 235557645 4053 + 247518478 I e hg19.chr2 231179871 2889 + 243199373 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=180.000000 s mm10.chr1_GL456221_random 159407 1 + 206961 A s rn5.chr9 92403823 1 + 121549591 G i rn5.chr9 I 5305 C 0 s canFam3.chr25 42528468 1 + 51628933 a i canFam3.chr25 C 0 C 0 s xenTro3.GL173141 778260 1 + 862435 A i xenTro3.GL173141 I 1 C 0 e saiBol1.JH378144 29644 4833 + 18451090 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119513943 3567 + 131632457 I e panTro4.chr2B 235557645 4053 + 247518478 I e hg19.chr2 231179871 2889 + 243199373 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=1883.000000 s mm10.chr1_GL456221_random 159408 1 + 206961 G s rn5.chr9 92403824 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231182760 1 + 243199373 G i hg19.chr2 I 2889 C 0 s panTro4.chr2B 235561698 1 + 247518478 G i panTro4.chr2B I 4053 C 0 s gorGor3.chr2B 119517510 1 + 131632457 G i gorGor3.chr2B I 3567 C 0 s saiBol1.JH378144 34477 1 + 18451090 G i saiBol1.JH378144 I 4833 C 0 s canFam3.chr25 42528469 1 + 51628933 a i canFam3.chr25 C 0 I 3679 s xenTro3.GL173141 778261 1 + 862435 G i xenTro3.GL173141 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=2548.000000 s mm10.chr1_GL456221_random 159409 1 + 206961 A s rn5.chr9 92403825 1 + 121549591 A i rn5.chr9 C 0 C 0 s hg19.chr2 231182761 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561699 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517511 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s saiBol1.JH378144 34478 1 + 18451090 A i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532149 1 + 51628933 A i canFam3.chr25 I 3679 C 0 s xenTro3.GL173141 778262 1 + 862435 A i xenTro3.GL173141 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94112552 1928 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=25537.000000 s mm10.chr1_GL456221_random 159410 20 + 206961 GGTAGAGGGAGGG--CTGTAAC s rn5.chr9 92403826 20 + 121549591 GGCAAAGGGCAGG--CTGTGAC i rn5.chr9 C 0 C 0 s hg19.chr2 231182762 20 + 243199373 GGCAGAGGGAAGG--ACAGGGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561700 20 + 247518478 GGCAGAGGGAAGG--ACAGGGC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517512 20 + 131632457 GGCAGAGGGAAGG--ACAGGGC i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114480 20 + 106825570 GGCAGAGGGAAGG--CCAGGGC i rheMac3.chr12 I 1928 C 0 s saiBol1.JH378144 34479 22 + 18451090 GATAGAGGGAAGTCCCCAGAAC i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532150 20 + 51628933 AGCAGAGGGAGGG--CTGGGAC i canFam3.chr25 C 0 C 0 s xenTro3.GL173141 778263 20 + 862435 TATTTAAATACAA--CTATAAC i xenTro3.GL173141 C 0 N 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=99184.000000 s mm10.chr1_GL456221_random 159430 81 + 206961 CAGAGTCCCTTAGAAAGTAAAGACTAC---TT-AACAAGTG-TCTAAAACAAAACCCAGATCTGATGCTATTCCTCCACCTCCTT---C s rn5.chr9 92403846 81 + 121549591 CAGAATCCTTTGGAAAGTAAAGACTAC---TT-AAAAGGTG-TCTAAAACAAAAACCAGATATGATGCTATCTCTCCGTCTTCTT---C i rn5.chr9 C 0 C 0 s hg19.chr2 231182782 85 + 243199373 CTGAATCCCTTGGAAAGAGGTGGCTGC---TTCAGTAAGTC-CCTGAAACAAGTACAGGATTCGATACCATCACTCAATCTCCTTCTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561720 88 + 247518478 CTGAATCCCTTGGAAAGAGGTGGCTGCTGATTCAGTAAGTC-CCTGAAACAAGTACAGGGTTCGATACCATCACTCAATCTCCTTCTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517532 85 + 131632457 CTGAATCCCTTGGAAAGAGGTAGCTGC---TTCAGTAAGTC-CCTGAAACAAGTACAGGATTCGATACCATCACTCAATCTCCTTCTGT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114500 85 + 106825570 CTGCATCCCTTGGAAAGAGGTGGCTGC---TTCAGTAAGTT-CCTGAAACCAGTACAGGATTCGATACCATCACTCAATCTCCTTCTGT i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34501 82 + 18451090 CTGAATCCCTTGGAGAGAGGTGGCTGC---TTCAGTAAGTT-TCAGAATCAAGTACTGGATTCAATACTGTCACTCAATCTCCTC---T i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532170 67 + 51628933 CCCAATTCCATGGAAAGACAAGGCTAC---ATAAGTAGGTCTTTTGAAACAAAAACAAGCTTC---------------CTCCCTT---- i canFam3.chr25 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26080203 44064 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=5713.000000 s mm10.chr1_GL456221_random 159511 3 + 206961 AGC s rn5.chr9 92403927 3 + 121549591 AGC i rn5.chr9 C 0 C 0 s hg19.chr2 231182867 3 + 243199373 AAC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561808 3 + 247518478 AAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517617 3 + 131632457 AAC i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114585 3 + 106825570 AAC i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34583 3 + 18451090 AAC i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532237 3 + 51628933 AAC i canFam3.chr25 C 0 C 0 s myoLuc2.GL429770 26124267 1 + 30916457 --T i myoLuc2.GL429770 I 44064 I 14 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=22712.000000 s mm10.chr1_GL456221_random 159514 12 + 206961 AAAGAAAAGGGA s rn5.chr9 92403930 12 + 121549591 AAAGAAAAGGAA i rn5.chr9 C 0 C 0 s hg19.chr2 231182870 12 + 243199373 AAAGACAAAAAA i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561811 12 + 247518478 AAAGACAAAAAA i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517620 12 + 131632457 AAAGACAAAAAA i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114588 12 + 106825570 AAAGACAAAAAA i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34586 12 + 18451090 AAAGACAAAAAA i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532240 12 + 51628933 AAAGAAAAAATA i canFam3.chr25 C 0 I 1 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26124268 14 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=2548.000000 s mm10.chr1_GL456221_random 159526 1 + 206961 T s rn5.chr9 92403942 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231182882 1 + 243199373 T i hg19.chr2 C 0 I 2 s panTro4.chr2B 235561823 1 + 247518478 T i panTro4.chr2B C 0 I 2 s gorGor3.chr2B 119517632 1 + 131632457 T i gorGor3.chr2B C 0 I 2 s rheMac3.chr12 94114600 1 + 106825570 T i rheMac3.chr12 C 0 I 2 s saiBol1.JH378144 34598 1 + 18451090 T i saiBol1.JH378144 C 0 I 2 s myoLuc2.GL429770 26124282 1 + 30916457 T i myoLuc2.GL429770 I 14 I 131 e canFam3.chr25 42532252 1 + 51628933 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=41753.000000 s mm10.chr1_GL456221_random 159527 36 + 206961 TTTCAGGCTTCTT----AGAACATCGCCTACATCATTCCT s rn5.chr9 92403943 33 + 121549591 TCTCAGACCTCTT----AGAACATC---TATGTCTATCCT i rn5.chr9 C 0 C 0 s hg19.chr2 231182885 37 + 243199373 ACTTAGACTCCTCTGCAAGAACTGA---TATGTCTCATCT i hg19.chr2 I 2 I 2 s panTro4.chr2B 235561826 37 + 247518478 ACTTAGACTCCTCTGCAAGAGCTGA---TATGTCTCATCT i panTro4.chr2B I 2 I 2 s gorGor3.chr2B 119517635 37 + 131632457 ACTTAGACTCCTCTGCAAGAGCTGA---TATGTCTCATCT i gorGor3.chr2B I 2 I 2 s rheMac3.chr12 94114603 37 + 106825570 ACTTAGTCTCCTCTGCAAGAGCTTA---TATGTCTCATCT i rheMac3.chr12 I 2 I 2 s saiBol1.JH378144 34601 37 + 18451090 ACTTAAACTCCTCTGCAAAAGTTTA---TATGTCTCATCT i saiBol1.JH378144 I 2 I 2 s canFam3.chr25 42532253 37 + 51628933 TCTTAGGCTTCTAGGCAACAATATA---CATGTCTTATCT i canFam3.chr25 I 1 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26124283 131 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 140358 5814 + 176633 I a score=2517.000000 s mm10.chr1_GL456221_random 159563 8 + 206961 --GTCAATAA s rn5.chr9 92403976 8 + 121549591 --GTCAAGAT i rn5.chr9 C 0 C 0 s hg19.chr2 231182924 8 + 243199373 --ATAGATGA i hg19.chr2 I 2 C 0 s panTro4.chr2B 235561865 8 + 247518478 --ATAGATGA i panTro4.chr2B I 2 C 0 s gorGor3.chr2B 119517674 8 + 131632457 --ATAGATGA i gorGor3.chr2B I 2 C 0 s rheMac3.chr12 94114642 8 + 106825570 --ATAGATGG i rheMac3.chr12 I 2 C 0 s saiBol1.JH378144 34640 8 + 18451090 --GCAGATGG i saiBol1.JH378144 I 2 C 0 s micMur1.scaffold_3075 146172 7 + 176633 --ATAGATG- i micMur1.scaffold_3075 I 5814 I 80 s canFam3.chr25 42532290 6 + 51628933 GCATAG---- i canFam3.chr25 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26124283 131 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I a score=5141.000000 s mm10.chr1_GL456221_random 159571 6 + 206961 GGCTGC s rn5.chr9 92403984 6 + 121549591 GGCTGC i rn5.chr9 C 0 C 0 s hg19.chr2 231182932 5 + 243199373 -TTTAT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561873 5 + 247518478 -TTTAT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517682 5 + 131632457 -TTTAT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114650 5 + 106825570 -TCTGT i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34648 5 + 18451090 -TTTGT i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532296 6 + 51628933 GTTTGT i canFam3.chr25 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26124283 131 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212450629 4800 + 221441202 I e micMur1.scaffold_3075 146179 80 + 176633 I a score=719.000000 s mm10.chr1_GL456221_random 159577 1 + 206961 A s rn5.chr9 92403990 1 + 121549591 T i rn5.chr9 C 0 C 0 s hg19.chr2 231182937 1 + 243199373 A i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561878 1 + 247518478 A i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517687 1 + 131632457 A i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114655 1 + 106825570 A i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34653 1 + 18451090 A i saiBol1.JH378144 C 0 I 3 s felCat5.chrC1 212455429 1 + 221441202 A i felCat5.chrC1 I 4800 I 31 s canFam3.chr25 42532302 1 + 51628933 G i canFam3.chr25 C 0 I 3 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26124283 131 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146179 80 + 176633 I a score=40001.000000 s mm10.chr1_GL456221_random 159578 28 + 206961 ACTAACTCCAG-CAGAATGTGTAGAACAG s rn5.chr9 92403991 28 + 121549591 ACTAACTCCAA-GAGTATATGTAGAACAT i rn5.chr9 C 0 C 0 s hg19.chr2 231182938 27 + 243199373 ATTAACTCCAG-TGAAAT-TCTAGAATGC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561879 27 + 247518478 ATTAACTCCAA-TGAAAT-TCTAGAATAC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517688 27 + 131632457 ATTAACTCCAA-AGAAAT-TCTAGAATAC i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114656 27 + 106825570 ATTAACTCCAA-TGAAAT-TCTAGAATAT i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34657 28 + 18451090 ATTAACTCCAACTGAAAT-TCTAGAATAT i saiBol1.JH378144 I 3 C 0 s canFam3.chr25 42532306 28 + 51628933 ATTAACTCCAACAGAAAT-TCTAGAATAA i canFam3.chr25 I 3 I 1 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26124283 131 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212455430 31 + 221441202 I e micMur1.scaffold_3075 146179 80 + 176633 I a score=2552.000000 s mm10.chr1_GL456221_random 159606 1 + 206961 C s rn5.chr9 92404019 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231182965 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561906 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517715 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114683 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34685 1 + 18451090 C i saiBol1.JH378144 C 0 C 0 s felCat5.chrC1 212455461 1 + 221441202 T i felCat5.chrC1 I 31 I 8 s canFam3.chr25 42532335 1 + 51628933 C i canFam3.chr25 I 1 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26124283 131 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146179 80 + 176633 I a score=10537.000000 s mm10.chr1_GL456221_random 159607 7 + 206961 CGTGTGT s rn5.chr9 92404020 7 + 121549591 CATGTCG i rn5.chr9 C 0 C 0 s hg19.chr2 231182966 7 + 243199373 CATGCCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561907 7 + 247518478 CGTGCCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517716 7 + 131632457 CATGCCT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114684 7 + 106825570 CATGCCT i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34686 7 + 18451090 TATGTCT i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532336 7 + 51628933 CATGTTT i canFam3.chr25 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26124283 131 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e felCat5.chrC1 212455462 8 + 221441202 I e micMur1.scaffold_3075 146179 80 + 176633 I a score=23393.000000 s mm10.chr1_GL456221_random 159614 15 + 206961 TTGC-CACAGGTGTGT s rn5.chr9 92404027 15 + 121549591 TTTA-CACAAGTGTGT i rn5.chr9 C 0 I 6 s hg19.chr2 231182973 15 + 243199373 TTTC-TCCAGGGGTAT i hg19.chr2 C 0 I 18 s panTro4.chr2B 235561914 15 + 247518478 TTTC-CCCAGGGGTAT i panTro4.chr2B C 0 I 18 s gorGor3.chr2B 119517723 15 + 131632457 TTTC-CCCAGGGGTAT i gorGor3.chr2B C 0 I 18 s rheMac3.chr12 94114691 15 + 106825570 TTTC-CCCAGGGGTGT i rheMac3.chr12 C 0 I 18 s saiBol1.JH378144 34693 15 + 18451090 ATTC-TCCAGGCGTAT i saiBol1.JH378144 C 0 I 18 s felCat5.chrC1 212455470 16 + 221441202 GTCCTCCCAGGCACAT i felCat5.chrC1 I 8 C 0 s canFam3.chr25 42532343 15 + 51628933 GTCC-CCCAGGCATAT i canFam3.chr25 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26124283 131 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146179 80 + 176633 I a score=17500.000000 s mm10.chr1_GL456221_random 159629 6 + 206961 -CTTTGC s rn5.chr9 92404048 6 + 121549591 -CTTTGC i rn5.chr9 I 6 C 0 s hg19.chr2 231183006 6 + 243199373 -GTTTAC i hg19.chr2 I 18 C 0 s panTro4.chr2B 235561947 6 + 247518478 -GTTTAC i panTro4.chr2B I 18 C 0 s gorGor3.chr2B 119517756 6 + 131632457 -GTTTAC i gorGor3.chr2B I 18 C 0 s rheMac3.chr12 94114724 6 + 106825570 -GTTTAC i rheMac3.chr12 I 18 C 0 s saiBol1.JH378144 34726 6 + 18451090 -GTTTAC i saiBol1.JH378144 I 18 C 0 s micMur1.scaffold_3075 146259 6 + 176633 -GTTTAC i micMur1.scaffold_3075 I 80 C 0 s felCat5.chrC1 212455486 7 + 221441202 CGTTTGC i felCat5.chrC1 C 0 I 13 s canFam3.chr25 42532358 7 + 51628933 TATTTGC i canFam3.chr25 C 0 I 13 e pteVam1.scaffold_9232 54738 5204 + 60856 I e myoLuc2.GL429770 26124283 131 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I a score=-4460.000000 s mm10.chr1_GL456221_random 159635 2 + 206961 -TT s rn5.chr9 92404054 2 + 121549591 -TG i rn5.chr9 C 0 C 0 s hg19.chr2 231183012 2 + 243199373 -TG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561953 2 + 247518478 -TG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517762 2 + 131632457 -TG i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114730 2 + 106825570 -TG i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34732 2 + 18451090 -TG i saiBol1.JH378144 C 0 C 0 s micMur1.scaffold_3075 146265 2 + 176633 -TG i micMur1.scaffold_3075 C 0 C 0 s felCat5.chrC1 212455506 2 + 221441202 TT- i felCat5.chrC1 I 13 I 3 s canFam3.chr25 42532378 2 + 51628933 TT- i canFam3.chr25 I 13 I 3 s myoLuc2.GL429770 26124414 2 + 30916457 TT- i myoLuc2.GL429770 I 131 N 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I a score=-5082.000000 s mm10.chr1_GL456221_random 159637 5 + 206961 GAACT- s rn5.chr9 92404056 5 + 121549591 AAACG- i rn5.chr9 C 0 C 0 s hg19.chr2 231183014 4 + 243199373 AAAT-- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235561955 4 + 247518478 AAAT-- i panTro4.chr2B C 0 I 1 s gorGor3.chr2B 119517764 4 + 131632457 AAAT-- i gorGor3.chr2B C 0 I 1 s rheMac3.chr12 94114732 4 + 106825570 AAAT-- i rheMac3.chr12 C 0 I 1 s saiBol1.JH378144 34734 4 + 18451090 AAAT-- i saiBol1.JH378144 C 0 I 1 s micMur1.scaffold_3075 146267 4 + 176633 GCAC-- i micMur1.scaffold_3075 C 0 I 2118 s felCat5.chrC1 212455511 5 + 221441202 GAAC-A i felCat5.chrC1 I 3 C 0 s canFam3.chr25 42532383 5 + 51628933 GAAC-A i canFam3.chr25 I 3 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I a score=1107.000000 s mm10.chr1_GL456221_random 159642 1 + 206961 G s rn5.chr9 92404061 1 + 121549591 G i rn5.chr9 C 0 C 0 s hg19.chr2 231183019 1 + 243199373 A i hg19.chr2 I 1 C 0 s panTro4.chr2B 235561960 1 + 247518478 A i panTro4.chr2B I 1 C 0 s gorGor3.chr2B 119517769 1 + 131632457 G i gorGor3.chr2B I 1 C 0 s rheMac3.chr12 94114737 1 + 106825570 A i rheMac3.chr12 I 1 C 0 s saiBol1.JH378144 34739 1 + 18451090 A i saiBol1.JH378144 I 1 C 0 s felCat5.chrC1 212455516 1 + 221441202 A i felCat5.chrC1 C 0 N 0 s canFam3.chr25 42532388 1 + 51628933 A i canFam3.chr25 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=50315.000000 s mm10.chr1_GL456221_random 159643 38 + 206961 GCTCAT-----------------------TCCTGTGAGCAGGAAAGCACAGGA-GTGTGTGG s rn5.chr9 92404062 37 + 121549591 GCTCGT-----------------------TTCTGTGAGCAGAAAAGCACATG--GTGTGTGG i rn5.chr9 C 0 C 0 s hg19.chr2 231183020 39 + 243199373 GTCAAC-----------------------TCCTGTGAGCGCAAAAGTACAGAGTATGCGTAG i hg19.chr2 C 0 C 0 s panTro4.chr2B 235561961 39 + 247518478 GTCAAC-----------------------TCCTGTGAGCACAAAAGTACAGAGTATGCGTAG i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517770 39 + 131632457 GTCAAC-----------------------TCCTGTGAGCACAAAAGTACAGAGTATGCGTAG i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114738 39 + 106825570 GTCAAC-----------------------TACTATGAGCACAAAAGTACAGAGTATATGTAA i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34740 39 + 18451090 GTCCAC-----------------------TCCTGTGACCACAAAAGTACAGAGTATGCATAG i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532389 62 + 51628933 GCCCACCCTGAGTAGGTGAGCATTTGTGTTCCCGTGGGCGCAGACGTACACAGTGTGCATGG i canFam3.chr25 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=42514.000000 s mm10.chr1_GL456221_random 159681 45 + 206961 TTTTGAGCTG--TGTCTCTCTTTTAAAAGGCATTCTTCA---------TG---GCTGTG s rn5.chr9 92404099 45 + 121549591 TTCTGAGCTG--TGTCTCTCCTCTCAAAGGCATGTTTCA---------TG---GCAGCA i rn5.chr9 C 0 C 0 s hg19.chr2 231183059 48 + 243199373 TCCTGAGTTG--TATATCTCATAACGAAGGTGCGCTTCC---------TGTTTGATGCT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562000 48 + 247518478 TCCTGAGTTG--TATATCTAATAACGAAGGTGCGCTTCC---------TGTTTAATGCT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517809 48 + 131632457 TCCTGAGTTG--TATATCTCATAACGAAGGTGCACTTCG---------TGTTTGATGCT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114777 48 + 106825570 TTCTGAGTTG--TGTATCTCATAAGGAATGTGTGCTTCC---------TGTTGGATGCT i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34779 48 + 18451090 TCCCAAGTTG--TGTATCTCGTAACAAAGGTGGTCTTCC---------TGTTTGATGCT i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532451 46 + 51628933 TTCTG-GCTG--CATCTCATCTGACAAAGGGGTGTTTGC---------TGTTTGATGC- i canFam3.chr25 C 0 C 0 s xenTro3.GL173673 109974 56 - 205955 TTTTGAGTCGGCCATTTTTTTTTTTGTAAATACAATTGAATCCCCAAGTGTTTGTG--- i xenTro3.GL173673 N 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=79974.000000 s mm10.chr1_GL456221_random 159726 161 + 206961 ---CTGATCAGTAAGGACCATGCCA-CCTTCTGAGTGGGTAGAAA--GCTCAGGGGGCTTTGT----------------------CTGGATCCTCT--------------CGTGCCTCCAGAGTCAAG-CTGGCTAC--GGGA-GTGACCAGAACTCCTTTGC----------TGCTATTTGGTGAGAAATAAAGAAGCTTGTCTTAACTGTTGGTG s rn5.chr9 92404144 160 + 121549591 ---CTGTGGAACACAGGTCATGTCC-CTAGCTAAGTGAGTAGAAA--GCTCAGAGGGCTTTGT----------------------TTGGTTCCTCT--------------CGTGCCTCCAGAATCAAG-CTGATAAT--GGGA-GAGGCCAGGACTCCTGTGC----------TGCTGTTTGAT-AGGAATAAGGAAGCTTGTCTTAACTGTTGGTG i rn5.chr9 C 0 C 0 s hg19.chr2 231183107 159 + 243199373 ---ATGTTTAGT----GGTGTCTCT-TCTCTTGGGTGGGCAGTGG--GCCTGGGGGAGTCTCT----------------------CTAGAACTTCT--------------GGTGCCCCCAGGAGCAGGCCTGAGTGT--GGGAGGGGGGTAGGGCTGGGTCAT----------TGCTTAGGAGTGAGGAGCAGGgagttctgcttctgatatttagg i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562048 173 + 247518478 ---ATGTTTAGT----GGTGTCTCT-TCACAAGGGTGGGCAGAGG--GCCTGGGGGAGTCTCT----------------------CTAGAACTTCTGAATNNNNNNNNNNGGTGCCCCCAGGAGCAGGCCTGGGTGT--GGGAGGGGGGTAGGGCTGGGTCAT----------TGCTTAGGAGTGAGGAGCAGGgagttctgcttctgatatttagg i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119517857 159 + 131632457 ---ATGTTTAGT----GGTGTCTCT-TCTCTTGGGTGGGCAGTGG--GCCTGGGGGATTCTCT----------------------GTAGAACTTCT--------------GGTGCCCCCAGGACCAGGCCTGAGTGT--GGGAGGGGGGTAGGGCTGGGTCAT----------TGCTTAGGAGTGAGGAGCAGGgagttctgcttctgatatttagg i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114825 158 + 106825570 ---ATGTTTAGT----GGTATCTCT-TCTCTTGGGTGGGCAGTGG--GCCCGGGGGAGTCTCT----------------------CTAGAACTTCT--------------GGTGCCCCCAGGACCAGGCCTGAGTGT--GGGA-GATGGTAGGGCTGGGTCAT----------TTCTTAGGAGTGAGAAGCAGGgagttctgcttctgatatttagg i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34827 158 + 18451090 ---ATATATAGT----CGTGTCTCT-TCTCTTGAGTGGGCAGAGA--GCCCAGGCGAGTCTCT----------------------GTGGAACTTCT--------------GGTACCTCCAGGGCCAGGTCTGGGTG---GGGAAGGGGGCAGGGCTAGGTTAT----------TACTTAGGAGCGAGGAGCAGGgatttctgcttcagatattctgg i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532497 111 + 51628933 -------ACACT----AGCATCTCTCTCCTTTGGGTGGGCAGGGG--GCAAGG---------------------------------------------------------GGCGTCTCCAGAAGCAGG-------------------------GCTGGTCTGC----------TGCTTAGGACTGAGGA-TGGGGAGCTCTGCTTTAGACCTGCAgg i canFam3.chr25 C 0 C 0 s anoCar2.chr6 62207742 132 + 80741955 ---GCAGTTAGT----ACCCTGCCA-CCCCCTCTGCAAAAAGT---------------CCTGC----------------------CTGGGTCTATT--------------TCTGTTTTC-----CAGATGTGAATTTCAAGCAAGATTTTATGGATGGTCTtc----------t-ttggggggtgggggaaagggaaggatgC----------AGGG i anoCar2.chr6 N 0 C 0 s xenTro3.GL173673 110030 191 - 205955 TGGATCTGAAAG----GAAATGCCA-GCATTTAAGGATATATTGATTGTACAGGGGCAGATCTCATCTATATAGCAGATACAGTGCTGGATCCTCA--------------AGTCTCATTAAAATCACA--TGGGTTC--CAGAAATGATTAGAAAGAATTTACCCACAATTCATGGCCGATAGTGATTAGTAGTG---TTTATTTTAGGGGTTGGGG i xenTro3.GL173673 C 0 N 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=30232.000000 s mm10.chr1_GL456221_random 159887 42 + 206961 AAGAAGCTCCTGCCTACA--------------AA---CTGTTAC-----TCAGGC-------AGTGACTTT s rn5.chr9 92404304 40 + 121549591 AAGAAGCTCCTGCCCACA-------------------CTGTTAC-----TCAGGC-------CATGACTTT i rn5.chr9 C 0 C 0 s hg19.chr2 231183266 50 + 243199373 aggaaactcctgagcatc--------------aagtcctcttgcagaggacagct-------agaaactct i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562221 50 + 247518478 aggaaactcntgagcatc--------------aagccttcttgcagaggacagct-------agaaactct i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119518016 50 + 131632457 aggaaactcctgagcatc--------------aagccctcttgcagaggacagct-------agaaactct i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94114983 48 + 106825570 agaaaactcctgagcatc--------------cagtcttcttgcagatgacagct-------agaaa--ct i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 34985 45 + 18451090 ta-----tcctaaccgtc--------------cagccctcttgcagatgacagct-------agaaactct i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532608 49 + 51628933 catgagctcctacccaac--------------cagc-ctcttacagaaaataact-------agaaacttt i canFam3.chr25 C 0 C 0 s anoCar2.chr6 62207874 69 + 80741955 AGGGAGGTCTTGAGCACATTTAAGggtaaataaatatttgctgaAGATGACTGCTTCCTTTCAGGTA--TT i anoCar2.chr6 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=45173.000000 s mm10.chr1_GL456221_random 159929 49 + 206961 GGAAG-----CAAAAACCC----CAAACAACCTGAGGTTTC-TACAA--------------AAGGAA--GAA----------CTC s rn5.chr9 92404344 49 + 121549591 GGAAG-----CAAAAAACC----CAAACAACCCGAGGCTTC-TACAA--------------ACAGAA--GAA----------CTC i rn5.chr9 C 0 C 0 s hg19.chr2 231183316 53 + 243199373 ggacggtagtcaaaaaac-------aatggcttgaggcctc-tgtaa--------------ggtaaatgaaa----------ctc i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562271 53 + 247518478 ggacagtagtcaaaaaac-------aatggcttgaggcctc-tgtaa--------------ggtaaatgaaa----------ctc i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119518066 53 + 131632457 ggacagtagtcaaaaaac-------aatggctcgaggcctc-tgtaa--------------ggtaaatgaaa----------ctc i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94115031 53 + 106825570 ggacagtagtcgaaaaac-------aatggcttgaggcctc-tgcaa--------------ggtaaATGAAA----------CTC i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 35030 53 + 18451090 ggacagtagtcaaaaaac-------aactgcctgaggcctc-tgcaa--------------ggcaaatgaaa----------CTC i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532657 63 + 51628933 gaacaaaagtcaaagaac-------aattgcctgaggcctc-tgaaa--------------agtaaaccaaagcaggctgacttt i canFam3.chr25 C 0 C 0 s anoCar2.chr6 62207943 59 + 80741955 GAAGCGGAATCGGGGAAACTGGGTGCATCTCTTGGGAGTTCTTATAG--------------GACAAA--GAG----------CAG i anoCar2.chr6 C 0 C 0 s xenTro3.GL173231 550362 60 - 683424 GGAAA-----TAAAAACT---------TTCCCACAGGTCTC-TACAACCCTATCCTACTCCAGTGGAGCAGA----------CAT i xenTro3.GL173231 N 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=-35570.000000 s mm10.chr1_GL456221_random 159978 28 + 206961 AG-ACAGGATTTGG----GAGAGATGTCAAAAG s rn5.chr9 92404393 28 + 121549591 AG-ATGGGATTTGG----GAGAGAAGTCAAAAG i rn5.chr9 C 0 C 0 s hg19.chr2 231183369 7 + 243199373 ga-agaga------------------------- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562324 7 + 247518478 aa-agaga------------------------- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119518119 7 + 131632457 aa-agaga------------------------- i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94115084 7 + 106825570 AG-AGAGG------------------------- i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 35083 7 + 18451090 AG-AGAGC------------------------- i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532720 16 + 51628933 gg-aggga----------------agacaaaac i canFam3.chr25 C 0 C 0 s anoCar2.chr6 62208002 28 + 80741955 AG-GCAGTGTTTGG----GATCAGTATCAACAG i anoCar2.chr6 C 0 N 0 s xenTro3.GL173231 550422 29 - 683424 AACAAAGGACTTTA----CAATTATATCCCAAA i xenTro3.GL173231 C 0 C 0 s latCha1.JH129257 22556 25 - 275026 AG-AAAAAATGTGAAGATGTGTAATG------- i latCha1.JH129257 N 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=5891.000000 s mm10.chr1_GL456221_random 160006 100 + 206961 TTGGGAGG---CAGCTAGCCCAGAA-----TTAACTTCCTGCTTCCCTT---TGTTT-GAACTTGGGAGCAA----ACACCGCC----CTGATTAGGGCAGGAAAAAAACAAA----AC-------------------------AAAAC---- s rn5.chr9 92404421 125 + 121549591 TTGGGTGG---CAGCTAGCCCAGAA-----TGAACTTCCTGCTTTCCTT---TGCCT-GAACTTGGGAGCAA----ATACAGTC----CTGTTTAGGGCAGGaaaaaaaaaaa----acccaaaagaaacaaaaaaccaaaaaaaaaaT---- i rn5.chr9 C 0 C 0 s hg19.chr2 231183376 63 + 243199373 --------------------------------cacttcctgttttttat---tgcct-gtccctgagagcaa----caacagtt----ttgtgtggcac-------------a----ac-------------------------caaag---- i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562331 63 + 247518478 --------------------------------cacttcctgctttttat---tgcct-gtccctgagagcag----caacagtt----ttgtgtggcac-------------a----ac-------------------------caaag---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119518126 63 + 131632457 --------------------------------cacttcctgttttttat---tgcct-gtccctgagagcag----caacagtt----ttgtgtggcac-------------a----ac-------------------------caaag---- i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94115091 63 + 106825570 --------------------------------CACTTCCTGTTTTTTAT---TGCCT-GTCcctaagagcag----caacagtt----ttgtgtgggac-------------a----ac-------------------------caaag---- i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 35090 64 + 18451090 --------------------------------CACTTCCTGTTTTTCAT---TGCCTGGCCcctgggagcag----ccacagtt----ttgtgtggggc-------------a----ac-------------------------caaaa---- i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532736 92 + 51628933 tcaagaggaaacagctgatgtaaga-------cgtttactgtttattac---gacct-ggccctgagaggagggcatgccagtc----ttgcatggagt-------------g----ac-------------------------caaaa---- i canFam3.chr25 C 0 C 0 s xenTro3.GL173231 550451 87 - 683424 ---------CCGATATGATCAAAAAATA--TCCATTTGCAGCCCCACATATGTATCT-ACACATGCAAATAA----CT----CA----CTATGCAACAC-------------ACATTAC-------------------------AAAAC---- i xenTro3.GL173231 C 0 C 0 s latCha1.JH129257 22581 103 - 275026 ------------------CCATGAAGTGGTGTAGCTT--TGTTCTGTTT---ACCTT-GTTCCATGTGCTAA----ACACATTTAGAAATGagcattac-------------a----acccccccccaaaaaaaaaaca-----caaattacc i latCha1.JH129257 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=45987.000000 s mm10.chr1_GL456221_random 160106 67 + 206961 CTTTGGCAGG---AGG--------------------------------CTTTGTGG--------TGAGTATAGTTATGAAAAAACAAAAAAACAAAACACAAA-ACA------ACCA s rn5.chr9 92404546 64 + 121549591 CCTTGGCAGG---AGG--------------------------------CTTTCTGG--------TGGGTATAGTCATGGAAAAACAAA----CAAAACACAAACACA------ACCA i rn5.chr9 C 0 C 0 s hg19.chr2 231183439 64 + 243199373 ctttgataga---aagc----------------------ctacc--ttctttgtgg--------ttggccaagccatgggga-----------agagcccaga-gca------acca i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562394 64 + 247518478 ctttgataga---aagc----------------------ctacc--ttctttgtgg--------ttggccaagccatgggga-----------agagcccaga-gca------acca i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119518189 64 + 131632457 ctttgataga---aagc----------------------ctacc--ttctttgtgg--------ttggccaagccatgggga-----------agagcccaga-gca------acca i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94115154 64 + 106825570 ctttgataga---aagc----------------------ctatc--ttctttgtgg--------ttggccgagccatgggga-----------agagcccaga-gca------acca i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 35154 64 + 18451090 ctttgataga---aagc----------------------ctacc--ttctttctgg--------ttggccgggccatgggga-----------aaaacccaga-gca------gcca i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532828 63 + 51628933 ctttggtaga---aagc----------------------ctacc--ttccctctgg--------tcagcaaagcca-gggaa-----------gcagcccagg-gcc------acta i canFam3.chr25 C 0 C 0 s sarHar1.chr3_GL849632_random 1101792 88 - 3586225 CTTTGGTAAG---AGGCAAGAATAAAAGCATGAAACAAAATGCCATATTTTCATGA--------TCAGAAAGCACTTTCAGA-----------ACCATCCAGA-ACA------ACCT i sarHar1.chr3_GL849632_random N 0 C 0 s xenTro3.GL173231 550538 74 - 683424 AATTAACAGAC--AAGG----------------------ATATA--AACAGCCCAG--------TTAACTGAATC-TGGAAAGACA-------AAAACACAAA-ACAAAACACATCA i xenTro3.GL173231 C 0 N 0 s latCha1.JH129257 22684 67 - 275026 ----------CCTAAAT----------------------ATTTCAAGTTTTTGTAAAATCAGTTTTAAACAAACAGTGTGAC-----------AAACTACAAA-ACA------GCCA i latCha1.JH129257 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=25396.000000 s mm10.chr1_GL456221_random 160173 23 + 206961 GG--GTCTGGAGAGTGAAGAGCAGA s rn5.chr9 92404610 16 + 121549591 GG--GTCTGGAGAG-------GAAA i rn5.chr9 C 0 C 0 s hg19.chr2 231183503 25 + 243199373 ggctttctaaggaatgaagggaaaa i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562458 25 + 247518478 ggctttctaaggaacgaagggaaaa i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119518253 25 + 131632457 ggctttctaaggaatgaagggaaaa i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94115218 25 + 106825570 ggctttctggggaatgaagggaaaa i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 35218 25 + 18451090 ggctttctggggaatgacgggaaaa i saiBol1.JH378144 C 0 C 0 s canFam3.chr25 42532891 25 + 51628933 agctttctgggtagcgagggggaaa i canFam3.chr25 C 0 C 0 s sarHar1.chr3_GL849632_random 1101880 23 - 3586225 GG--ACCTAACCTATAATTCCTATA i sarHar1.chr3_GL849632_random C 0 C 0 s latCha1.JH129257 22751 24 - 275026 -GCTGTCTGCTCTGTAATGGGCAAA i latCha1.JH129257 C 0 N 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=25262.000000 s mm10.chr1_GL456221_random 160196 19 + 206961 TCTCCAAAAAATGAAAGTC s rn5.chr9 92404626 19 + 121549591 TCTCCAAAGAGCGAAAGGC i rn5.chr9 C 0 C 0 s hg19.chr2 231183528 19 + 243199373 tcccagaaggcaaaaagcc i hg19.chr2 C 0 I 36 s panTro4.chr2B 235562483 19 + 247518478 tcccagaaggcaaaaagcc i panTro4.chr2B C 0 I 36 s gorGor3.chr2B 119518278 19 + 131632457 tcccagaaggcaaaaagcc i gorGor3.chr2B C 0 I 36 s rheMac3.chr12 94115243 19 + 106825570 tcccagaaggcaaaaagtc i rheMac3.chr12 C 0 I 36 s saiBol1.JH378144 35243 19 + 18451090 ttccaggagagagaaagtc i saiBol1.JH378144 C 0 I 36 s canFam3.chr25 42532916 19 + 51628933 tgctagaaaggagaaagtc i canFam3.chr25 C 0 N 0 s sarHar1.chr3_GL849632_random 1101903 19 - 3586225 TCTCCAACAATTGAATAAT i sarHar1.chr3_GL849632_random C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=154607.000000 s mm10.chr1_GL456221_random 160215 165 + 206961 CAGGGCT-TGTCTAATG------------------CTCTCTGAACTGAAAGCTGAGCGTTGCCT--TTCATAAACAGATT-GCTTGCAATCTGAGCCATTACAATCATGTGTCCCCTCTGCTGCAACAAAAG-----CCTAAATTCTGGCCTAAGCAGGAGTTGGTCGGT---AGCTGCCACTCCAATCACTCTT s rn5.chr9 92404645 182 + 121549591 CGGGGCT-TGTCTGATGTCCAGGA-AAACAGGATTCTGTATGAACTAAAAGATGAGCCTTGTCC--TTCAGACACAGATT-GCTTGCAACCCGAGCCATTGCAGTCATAAGTCCCATCTGCTGTCACAAACG-----CCTGAATTCTGGCTTAAGCAGGAGTTGATAGGT---AGCTGCCCACCCAATCAATCTT i rn5.chr9 C 0 C 0 s hg19.chr2 231183583 186 + 243199373 caagtctctggctgatgcctggagtgaagtgaaatcagtctgaacatagagcagagctttgcccactgcagacaagaactagagtgtggcttgaacc----taaacacagaaatcacctgccagaacaaaaGCTCTTCCTG--TTCTGATCCAAGCTAGAGTTAGCAATT---AGCTGCCAATGTAGTCACTCTA i hg19.chr2 I 36 C 0 s panTro4.chr2B 235562538 186 + 247518478 caagtctctggctgatgcctgGAGTGAAGTGAAATCAGTCTGAACATAGAGCAGAGCTTTGCCCACTGCAGACAAGAACTAGAGTGTGGCTTGAACC----TAAACACAGAAATCACCTGCCAGAACAAAAGCTCTTCCTG--TTCTGATCCAAGCTAGAGTTAGCAATT---AGCTGCCAATGTAGTCACTCTA i panTro4.chr2B I 36 C 0 s gorGor3.chr2B 119518333 186 + 131632457 caagtctctggctgatgcctggaGTGAAGTGAAATCAGTCTGAACATAGAGCAGAGCTTTGCCCACTGCAGACAAGAACTAGAGTGTGGCTTGAACC----TAAACACAGAAATCACCTGCCAGAACAAAAGCTCTTCCTG--TTCTGATCCAAGCTAGAGTTAGCAATT---AGCTGCCAATGTAGTCACTCTA i gorGor3.chr2B I 36 C 0 s rheMac3.chr12 94115298 186 + 106825570 caagtctctgactgatgcctgGAGTAAAATGAAATCAGTCTGAACATAGGATGGAGCTTTGCCCACTGCAGACAAGAACTAGAGTGTAGCTTGAACC----TAAACGCAGAAATCACCTGCCAGAACAAAAGCTCTTCCTG--TTCTGATCCAAGCTAGAGTTGGCAATT---AGCTGCCAATGTAGTCACTCTA i rheMac3.chr12 I 36 C 0 s saiBol1.JH378144 35298 185 + 18451090 caaatctctaactgatctctggaacaAAGTGAAATTAGTGTAAACATAGGGTGGAGCTTTGCCCATTGCAGAAAAGAACGAGAGTGTAGCTTGAATC----TAAACGCAGAAATCACTCACCAGAACAAAA-TTCTTTCTG--TTCTGATCCATGCTAGAGTGGGCAATT---AGCAGCCAGTGCAGTCACTCTA i saiBol1.JH378144 I 36 C 0 s sarHar1.chr3_GL849632_random 1101922 145 - 3586225 -TAGTCTTTGTCTAAAG--------------------------ACCCAGTGCCAGGAAACCCCCTCCTTTTGGAAACACCCCTGTTTGCTTTGG-------CAGA-ACTGTTATCATT-----------AGGATGTGCTTC--CTTAAAGCAAATCTAAATTTGTCTCTTCCCAACTTCCACTC--ATCactctt i sarHar1.chr3_GL849632_random C 0 N 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=50929.000000 s mm10.chr1_GL456221_random 160380 55 + 206961 GTACAAGAATGGGCCCTCAGAACCCAAGAACCCTTTTACTTTGCCAAGTGCCTTC s rn5.chr9 92404827 55 + 121549591 GACCAAGAATGGGTCCTCAGAACCCAAGAACACTTTTACCCTGCAAAGTGCCTTC i rn5.chr9 C 0 C 0 s hg19.chr2 231183769 54 + 243199373 GATGCAGACTGGACACTGGGTGCTGCAGGTCAATGTGACTA-ACCAGGTGCCTTC i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562724 54 + 247518478 GATGCAGACTGGACACTGGGTGCTGCAGATCAATGTGACTA-ACCAGGTGCCTTC i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119518519 54 + 131632457 GATGCAGACTGGACACCGGGTGCTGCAGATCAACGTGACTA-ACCAGGTGCCTTC i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94115484 54 + 106825570 GATGCAGACTGGACACCGGGTGCTGCAGATCAATGTAGGTA-ACCAGGTGCCTTC i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 35483 54 + 18451090 GACACAGACTGGATACCCGGCACTGCAGATCAATATCATTA-ACCAGGTGTCTTC i saiBol1.JH378144 C 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=2800.000000 s mm10.chr1_GL456221_random 160435 1 + 206961 C s rn5.chr9 92404882 1 + 121549591 C i rn5.chr9 C 0 C 0 s hg19.chr2 231183823 1 + 243199373 C i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562778 1 + 247518478 C i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119518573 1 + 131632457 C i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94115538 1 + 106825570 C i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 35537 1 + 18451090 C i saiBol1.JH378144 C 0 I 369 s sarHar1.chr1_GL834782_random 2076805 1 - 2194449 C i sarHar1.chr1_GL834782_random N 0 C 0 e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=11732.000000 s mm10.chr1_GL456221_random 160436 32 + 206961 AAACCATGTGTCCCATGATGTTTCTGTAAGTA---- s rn5.chr9 92404883 32 + 121549591 AAACCATCTGTGCCATGATGTTTCTGTTCACA---- i rn5.chr9 C 0 C 0 s hg19.chr2 231183824 27 + 243199373 -CACCTTCTGC----TATCACTTCTGTTCAGA---- i hg19.chr2 C 0 I 1 s panTro4.chr2B 235562779 27 + 247518478 -CACCTTCTGC----TATCACTTCTGTTCAGA---- i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119518574 27 + 131632457 -CACCTTCTGC----TCTCACTTCTATTCAGA---- i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94115539 27 + 106825570 -CACCTTCTGC----TATCACTTCTGTTCAGA---- i rheMac3.chr12 C 0 C 0 s sarHar1.chr1_GL834782_random 2076806 32 - 2194449 AAAGGCTGTGT----CCCCAAATTTTTGCAAAAGTT i sarHar1.chr1_GL834782_random C 0 C 0 e saiBol1.JH378144 35538 369 + 18451090 I e pteVam1.scaffold_9232 54738 5204 + 60856 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=77948.000000 s mm10.chr1_GL456221_random 160468 79 + 206961 TCTTC--------AGTCTTTCATCTGACATGCAAC---CTCTTCCAGGATGGCCTGAAAACTGAAG-TTTCCCCT---CCTGAAACCTTTATTC s rn5.chr9 92404915 80 + 121549591 TCTTC--------ACCCTTCTGTCTCAAATGCAAC---CTCTTCGAGGATTGCCTGAAAATAGAAGTTTTCCCCT---CTTGAAACCTTCATTC i rn5.chr9 C 0 C 0 s hg19.chr2 231183852 91 + 243199373 TCCTCTGGGCTGGAATTTTTCATCTGACATGAAACCACCTCTTACTACCTTACATCAACACCGAGATATTGCTCT---CCTGAAATCTTCATTC i hg19.chr2 I 1 I 53 s panTro4.chr2B 235562806 91 + 247518478 TCCTCTGGGCTGGAATTTTTCATCTGACATGAAACCATCTCTTACTACCTTACATCAACACCGAGATATTGCTCT---CCTGAAATCTTCATTC i panTro4.chr2B C 0 I 53 s gorGor3.chr2B 119518601 91 + 131632457 TCCTCTGGGCTGGAATTTTTCATCTGACATGAAACCACCTCTTACTACCTTACATCAACACCGAGATATTGCTCT---CCTGAAATCTTCATTC i gorGor3.chr2B C 0 I 53 s rheMac3.chr12 94115566 91 + 106825570 TCCTCTGGGCTGAAATTTTTCATCTGACATGAAACCACCTCTTACTACATTACGTCAATACCGAGATGCTTCTCT---CCTGAAATCTTCATTC i rheMac3.chr12 C 0 I 54 s pteVam1.scaffold_10686 41397 77 + 49512 --------TCTGAAATTTTTTATCTGACATAAAACCATTTGTTCC-----TACATGAAAACTAGAA-TTTTCTCT---CCTGAAATCCTCATTC i pteVam1.scaffold_10686 I 12931 I 1 s sarHar1.chr1_GL834782_random 2076838 79 - 2194449 CTATC--------AGGATTTTGTCTGCTGAGAAAG---TTTTTTCAGGGTAAT----AAACTCAATTTTTGCCATAAACCTCATGCCTGTATTC i sarHar1.chr1_GL834782_random C 0 C 0 e saiBol1.JH378144 35538 369 + 18451090 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=-4287.000000 s mm10.chr1_GL456221_random 160547 28 + 206961 TACCTTGTTTTGAAGCCGTGTTGTG-----------------------TGG s rn5.chr9 92404995 51 + 121549591 CACGTTGTTTTGTAGCCAGGCTGTGTGTTTGACCAAAGAAGCATTCTCTGG i rn5.chr9 C 0 C 0 s pteVam1.scaffold_10686 41475 28 + 49512 AGATTTCCCCTGAACCAATGGCGTG-----------------------TGG i pteVam1.scaffold_10686 I 1 I 31 s sarHar1.chr1_GL834782_random 2076917 17 - 2194449 -ATTCGGTTTGCAAATTA--------------------------------- i sarHar1.chr1_GL834782_random C 0 C 0 e saiBol1.JH378144 35538 369 + 18451090 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94115657 54 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119518692 53 + 131632457 I e panTro4.chr2B 235562897 53 + 247518478 I e hg19.chr2 231183943 53 + 243199373 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=3882.000000 s mm10.chr1_GL456221_random 160575 40 + 206961 TTTTCCAAAGCATGACAGCCAAAGTTATG----CTTTGAATTTT s rn5.chr9 92405046 40 + 121549591 TTTTCCCAAGCGTGACAGCCAAAGTTATG----CTTTCAGTTTG i rn5.chr9 C 0 C 0 s sarHar1.chr1_GL834782_random 2076934 41 - 2194449 TTTCCCAAAGCCTGCAA---AAGGTTAGGGAATCTCTCAACCCt i sarHar1.chr1_GL834782_random C 0 C 0 e saiBol1.JH378144 35538 369 + 18451090 I e pteVam1.scaffold_10686 41503 31 + 49512 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94115657 54 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119518692 53 + 131632457 I e panTro4.chr2B 235562897 53 + 247518478 I e hg19.chr2 231183943 53 + 243199373 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=-233.000000 s mm10.chr1_GL456221_random 160615 7 + 206961 ----AATTACT s rn5.chr9 92405086 7 + 121549591 ----AATTACT i rn5.chr9 C 0 C 0 s sarHar1.chr1_GL834782_random 2076975 7 - 2194449 ----tatttct i sarHar1.chr1_GL834782_random C 0 N 0 s xenTro3.GL172662 1859729 7 - 4426282 AACAAAT---- i xenTro3.GL172662 N 0 C 0 e saiBol1.JH378144 35538 369 + 18451090 I e pteVam1.scaffold_10686 41503 31 + 49512 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94115657 54 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119518692 53 + 131632457 I e panTro4.chr2B 235562897 53 + 247518478 I e hg19.chr2 231183943 53 + 243199373 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=6965.000000 s mm10.chr1_GL456221_random 160622 185 + 206961 GTGTCAAAGAGATCTGTGAAACAAGAATGCCTCTGTGAAAC--AAGACACATGTT--TTCACTTCCCTACACAGATTTGTTTGCCCCAACTACATAGGATGTGCTTGGTCACATGTAGGGAGGAGGTACGTATG-TGGGAAACATGTCAACATGTATGCTTGCCTGATTGGATGCAGGCAGGAATTATAT--- s rn5.chr9 92405093 175 + 121549591 GTGTCGAAGAGATCGGTGA---AAGATTGCCTCTGTGAAAT--AAGACACAGGTT--TTCACTCCCCGGCACGGGTTTGTTTGACCCAACTGCACAAGATGTGGTTGAGCACATGTAGGCAGGAGGTCCATATT-TGGGAAATGT------ATGTATGCTTGCCTGATTGGATGCAGGCA-GAATTATAT--- i rn5.chr9 C 0 C 0 s xenTro3.GL172662 1859736 156 - 4426282 GTGTTAAAGTAGCGTTTATCACAAGCATACCTCTGTCAGACTAAAGGCGCGTGATGCTTGAAAAGCCAGCA-------GTTTA----AATTCAATAGGGTCTCC----------GAAAGGAGGGTGTAACAATGATAACAGAAGT------TAATAT----------TTTGATACAATAACAACTCTTATCTT i xenTro3.GL172662 C 0 C 0 e saiBol1.JH378144 35538 369 + 18451090 I e pteVam1.scaffold_10686 41503 31 + 49512 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94115657 54 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119518692 53 + 131632457 I e panTro4.chr2B 235562897 53 + 247518478 I e hg19.chr2 231183943 53 + 243199373 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I a score=814.000000 s mm10.chr1_GL456221_random 160807 147 + 206961 CAGGAAGCATAATTCCCCCTGATTGGACACAAAGGG-----------------TAATATGGTGGCCTTATGGGGCTACTCATTTAAGCTTCTGTGAAATTTGCCATTCTTTTGTGCATCCAGGAATAGA------CCTGGCCAGAGTTCATCCTGACAGTATCAAAGCTT s xenTro3.GL172662 1859892 168 - 4426282 CAGCACTTCAGCCTCTTCTTGTATCTATATATAGGGACCCAAGGGCCTGTACCTAGGACAGCAGCCTTAGGGGGATGACCCTCGGGGTGCCTATATAATCGATAATTATTTTTTTTAACATAAAATAAGAAACCTcctggccaaaggaaag--tgacggtactgaagctt i xenTro3.GL172662 C 0 N 0 e saiBol1.JH378144 35538 369 + 18451090 I e pteVam1.scaffold_10686 41503 31 + 49512 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94115657 54 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119518692 53 + 131632457 I e panTro4.chr2B 235562897 53 + 247518478 I e hg19.chr2 231183943 53 + 243199373 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I e rn5.chr9 92405268 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456221_random 160954 56 + 206961 GCTTCCAATTTGATTCAAAGTTATGATAGCCATCTTATTCTCACCCAGGTAGAGTA e saiBol1.JH378144 35538 369 + 18451090 I e pteVam1.scaffold_10686 41503 31 + 49512 I e turTru2.JH486691 31615 7861 - 63237 I e rheMac3.chr12 94115657 54 + 106825570 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e gorGor3.chr2B 119518692 53 + 131632457 I e panTro4.chr2B 235562897 53 + 247518478 I e hg19.chr2 231183943 53 + 243199373 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I e rn5.chr9 92405268 0 + 121549591 C a score=10743.000000 s mm10.chr1_GL456221_random 161010 9 + 206961 ACACAAGGC s hg19.chr2 231183996 9 + 243199373 ACACAAGGA i hg19.chr2 I 53 C 0 s panTro4.chr2B 235562950 9 + 247518478 ACACAAGGA i panTro4.chr2B I 53 C 0 s gorGor3.chr2B 119518745 9 + 131632457 ACACAAGGA i gorGor3.chr2B I 53 C 0 s rheMac3.chr12 94115711 9 + 106825570 ATACAAGGA i rheMac3.chr12 I 54 C 0 s saiBol1.JH378144 35907 9 + 18451090 ATACAAGGA i saiBol1.JH378144 I 369 C 0 e pteVam1.scaffold_10686 41503 31 + 49512 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I e rn5.chr9 92405268 0 + 121549591 C a score=203241.000000 s mm10.chr1_GL456221_random 161019 176 + 206961 CAGAATGTTCTAGATTTCTGTATGA-ACAATTCTGCCAATATTATAGCTGGAAAATGGGGTGTGGGGTTTTCAGGGAAGGGGG---------------GAC------------CCTTTAATAGCATTCTTCCAGAGCTGCTTTGGGGTAAGTAGGTGTAGCAACGTTCTGTTCCCTGTGCACCTCA-CCTCCCAAGAGTT-----ACACT s hg19.chr2 231184005 203 + 243199373 CAGCACACTCTAGAGTTGTATA-GT-GTGGCCCCGCCAGCATTA-AGCAGGAAACTAGGGTGTGGCCTGTTCAGGGAAGGGGGTTACTTCTCTACTGAGACATGTGG-TTACATATTTAACCGCATCCTGCCAGAGCTGCC---AGAAAGGTGGGTAGGACCACTTTCCATCTCCTGTTCACCTCATCCTCCAGAGGGTTCATCCACAGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235562959 203 + 247518478 CAGCACACTCTAGAGTTGTATA-GT-GTGGCCCCGCCAGCATTA-AGCAGGAAACTAGGGTGTGGCCTGTTCAGGGAAGGGGGTTACTTCTCTACTGAGACATTTGG-TTACATATTTAACCGCATCCTGCCAGAGCTGCC---AGAAAGGTGGGTAGGACCACTTTCCATCTCCTGTTCACCTCAACCTCCAGAGGGTTCATCCACAGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119518754 203 + 131632457 TAGCACACTCTAGAGTTGTGTA-GT-GTGGCCCCGCCAGCATTA-AGCAGGAAACTAGGGTGTGGCCTGTTCAGGGAAGGGGGTTACTTCTCTACTGAGACATTTCG-TTACATATTTAACCACATCCTGCCAGAGCTGCC---AGAAAGGTGGATAGGACCACTTTCCATCTCCTGTTCACCTCATCCTCCAGAGGGTTCATCCACAGT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94115720 203 + 106825570 CAGCACACTCTAGAGTTGTGTA-GT-GTGGCCCCACCAATATTA-AGCAGGAAACTAGGGTGTGGCCTGTTCAGGGAAGCAGGTGACTCCTCTGCTGAGACATTTGG-TTACATATTTAACTGCATCCTGCCAGAGCTGCC---AGAAAGGCGGGTAGGACCACTTTCCATCTCCTGTTCACCTCATCCTCCAGAGGGTTCATCCACAGT i rheMac3.chr12 C 0 C 0 s saiBol1.JH378144 35916 195 + 18451090 CAGCACACTCCAGGGTCATGTA-CT-GTGGCCCCAGGAATATTA-AGCTGGAAACTAGGATGTGATGGGTTCAGGGAAGGGGGTGAATCCTCTGCTGAGATACTTGA-TTACATCTTTAACTGCCTCCTACCAGAGCTTCT---GGGAAGGTAGGTAAAACCACTTTCTATCCCCTGTTCACCTCATCCTCCAGAGGGTTCA-------- i saiBol1.JH378144 C 0 C 0 s pteVam1.scaffold_10686 41534 194 + 49512 CAGTGCATTCTAGATTCTTACA-GTGGTATCCTCCTCAATAGCCTAGCCAGGAACTGGGGTGAAG--TGTCCAGGGGAGGGAGTGGCTCCTGTGCTGACACACTTGTCTCACGCCTTTAGTTGCATTCTGCCAGCTATGT----GGAGGGGTAGGTAGGACCACGTTCTGTG--------GCCTCCACTTCCAG-GGGTTCATGCACAGT i pteVam1.scaffold_10686 I 31 C 0 e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e micMur1.scaffold_3075 146271 2118 + 176633 I e rn5.chr9 92405268 0 + 121549591 C a score=9713.000000 s mm10.chr1_GL456221_random 161195 7 + 206961 TGACTGT s hg19.chr2 231184208 7 + 243199373 TGCCTGA i hg19.chr2 C 0 I 23 s panTro4.chr2B 235563162 7 + 247518478 TGCCTGA i panTro4.chr2B C 0 I 23 s gorGor3.chr2B 119518957 7 + 131632457 TGCCTGA i gorGor3.chr2B C 0 I 23 s rheMac3.chr12 94115923 7 + 106825570 TGCCTGA i rheMac3.chr12 C 0 I 23 s saiBol1.JH378144 36111 7 + 18451090 TGGCTGA i saiBol1.JH378144 C 0 I 23 s micMur1.scaffold_3075 148389 7 + 176633 TGCCTGA i micMur1.scaffold_3075 I 2118 N 0 s pteVam1.scaffold_10686 41728 6 + 49512 GGCCTG- i pteVam1.scaffold_10686 C 0 C 0 e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=182146.000000 s mm10.chr1_GL456221_random 161202 163 + 206961 AGAGCTGGGCCTTCAGGTCTCAGGAGTGCCAGTCAGACACTGGACAGTATAGTGATA----------GTTCAG--CTCTCCCTG-------TGTGCACTCCTCTGGGTCTCCAAGAA-GGA-ACTGAACCAGCAACATATAGACATTGGATTCCCATGCACACATTAGCTTTGAGGTGCTTCTG s hg19.chr2 231184238 177 + 243199373 GGACCTCAGCCTTGAGATCTCAGGACCTCGAGT------CTTGGCCATATAATGATGTAGCCACCACTTCTGGCTCTCTCTCTGGTGTCTGTGTTCACTCCTCTGAGTCTCACAGAATGGG-ATTGTGCCCATGGCTGGTGCACTCTGCATGCCAGTGGACATGTCTGCTCTTAGATGGTTTTG i hg19.chr2 I 23 C 0 s panTro4.chr2B 235563192 177 + 247518478 GGACCTCAGCCTTGAGATCTCAGGACCTCGAGT------CTTGGCCATATAATGATGTAGCCACCACTTCTGGCTCTCTCTCTGGTGTCTGTGTTCACTCCTCTGAGTCTCACAGAATGGG-ATTGTGCCCATGGCTGGTGCACTCTGCATGCCAGTGGACATGTCTGCTCTTAGATGGTTTTG i panTro4.chr2B I 23 C 0 s gorGor3.chr2B 119518987 175 + 131632457 GGACCTCAGCCTTGAGATCTCAGGACCTCGAGT------CTTGGCCATATAATGATGTCGCCACCACTTTTGG--CTCTCTCTGGTGTCTGTGTTCACTCCTCTGAGTCTCACAGAATGGG-ATTGTGCCCATGGCTGGTGCACTCTGCATGCCAGTGGACAGGTCTGCTCTTAGATGGTTTTG i gorGor3.chr2B I 23 C 0 s rheMac3.chr12 94115953 174 + 106825570 GGACTCCAGCCTTGAGATCTCAGGACCTCGAGT------CTTGGCCATATAATGATGTGGCCACCACTTCTGG--CTCTCTCTGGTGTCTGTGTTCACTCTTCTGGGTCTCAGAGAATGGG-A-TGTGCCCATGGCTGGTGCACCCTGCATGCCAGTGGACATGTCTGCTCTTAGATGTTTTTG i rheMac3.chr12 I 23 C 0 s saiBol1.JH378144 36141 173 + 18451090 GGACCTCAGCCTTGACAGCTCAGGACCTTGGTT------CTTGACCATATAATGATGTAGCCACCACTTCTGG--CTCTCTCTGGTGTCTCTGACCACTCCTCTGGGACTCAGAGAATAGA---TGTGTCCATGGTTGGTGTATTCTGCGTGCCAGTAGACATATCTGCTCTCAGACAATTTTG i saiBol1.JH378144 I 23 C 0 s pteVam1.scaffold_10686 41734 164 + 49512 AGACCTCAGACTTGGGGTCTCAGGAGGACAAGT------CTTAGCTGTATAATAATGTGGC-------TCTAG---ATTGTCTGGTGTCTGTGACCAAACCTCAGG----CTGAGAACCGTCACTGAGCCCTTGGCAGATACACTCTGCCTGCCTCTAGATGTGTCCGCTCTTAGAAGTTTTTG i pteVam1.scaffold_10686 C 0 C 0 e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=34056.000000 s mm10.chr1_GL456221_random 161365 26 + 206961 CAAAGTCT-----------TGTTACTTAGAGTCCTGT s hg19.chr2 231184415 37 + 243199373 TAACATCTGTGTCAGTACATGTGGCCCAGAGTGCTGT i hg19.chr2 C 0 C 0 s panTro4.chr2B 235563369 37 + 247518478 TAACATCTGTGTCAGTACATGTGGCCCAGAGTGCTGT i panTro4.chr2B C 0 C 0 s gorGor3.chr2B 119519162 37 + 131632457 TAATATCTGTGTCAGTACATGTGGCCCAGAGTGCTGT i gorGor3.chr2B C 0 C 0 s rheMac3.chr12 94116127 37 + 106825570 TAACGTCTGTGTCCGTACATGTGGCCCAGAGTGCTGT i rheMac3.chr12 C 0 N 0 s saiBol1.JH378144 36314 37 + 18451090 TAAAATCTGTGTCAGTACATGTGGCCCAGAGTGTTAT i saiBol1.JH378144 C 0 C 0 e pteVam1.scaffold_10686 41898 0 + 49512 C e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=910.000000 s mm10.chr1_GL456221_random 161391 1 + 206961 A s hg19.chr2 231184452 1 + 243199373 A i hg19.chr2 C 0 N 0 s panTro4.chr2B 235563406 1 + 247518478 A i panTro4.chr2B C 0 N 0 s gorGor3.chr2B 119519199 1 + 131632457 A i gorGor3.chr2B C 0 N 0 s saiBol1.JH378144 36351 1 + 18451090 A i saiBol1.JH378144 C 0 I 1698 e pteVam1.scaffold_10686 41898 0 + 49512 C e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456221_random 161392 142 + 206961 AAATCATCCCCAAGTTTCTTATTCTAGATCGAAGTAGAAATGGAGACATGGCTAAAATGTGGGGCACTAAAAGACCCCAAAGGCTAACCTCAGGCATGGCCTCACACTACTCTTGTGAGTCATACCCACCCCAGCTTCATAC e saiBol1.JH378144 36352 1698 + 18451090 I e pteVam1.scaffold_10686 41898 0 + 49512 C e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=1183.000000 s mm10.chr1_GL456221_random 161534 41 + 206961 CAGCCTATCCCTGTGCATGTGAACTAAAGGATGGGAAAGAG s pteVam1.scaffold_10686 41898 41 + 49512 CAGTCTGTGTCACTGCATGTAGCCTGAAGTGTTGTACAGAA i pteVam1.scaffold_10686 C 0 C 0 e saiBol1.JH378144 36352 1698 + 18451090 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=-995.000000 s mm10.chr1_GL456221_random 161575 3 + 206961 GCA-- s myoLuc2.GL429770 26335326 3 + 30916457 --tcc i myoLuc2.GL429770 N 0 I 429 s pteVam1.scaffold_10686 41939 3 + 49512 GCT-- i pteVam1.scaffold_10686 C 0 C 0 e saiBol1.JH378144 36352 1698 + 18451090 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=41.000000 s mm10.chr1_GL456221_random 161578 9 + 206961 AGCAGACTC s pteVam1.scaffold_10686 41942 9 + 49512 GGCTAATTG i pteVam1.scaffold_10686 C 0 C 0 e saiBol1.JH378144 36352 1698 + 18451090 I e myoLuc2.GL429770 26335329 429 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=-384.000000 s mm10.chr1_GL456221_random 161587 32 + 206961 TCTGCTGGGAGACCTGTCAGGGT-ACAGGCTCA- s pteVam1.scaffold_10686 41951 33 + 49512 TCCCCTGGGAGGCCAGCCTGCGTCACAGGCACA- i pteVam1.scaffold_10686 C 0 T 36226 s xenTro3.GL172681 2230838 33 + 3820989 TTTGTTGATAATCCTTGCCTGAT-TCCTGCTCTG i xenTro3.GL172681 N 0 C 0 e saiBol1.JH378144 36352 1698 + 18451090 I e myoLuc2.GL429770 26335329 429 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=-417.000000 s mm10.chr1_GL456221_random 161619 124 + 206961 CCTCAGGTCACCAAGTCCCTCAGAGAAAGTGCTCCCAGAAGGAGGAACAGAGAGAACTTGATATATCCTAATGATCCATGA---GGGGCCTCCTAGAAAGACTCACTGGAGGTGACAGCTCATCACT s xenTro3.GL172681 2230871 112 + 3820989 ATCCTGCTTTCTGAGTCCCCTAGTcaggg-----ccggaactaggggtaggcagaagaggcagctgcctagggcgcaacgattggggggcgccaggcaggaacctctc----------ctgcctact i xenTro3.GL172681 C 0 C 0 e saiBol1.JH378144 36352 1698 + 18451090 I e pteVam1.scaffold_10686 41984 36226 + 49512 T e myoLuc2.GL429770 26335329 429 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=-464.000000 s mm10.chr1_GL456221_random 161743 69 + 206961 ACTTATCATATCTGCACCTCA-GAAGGGAGGACCACATCTTTGTCCTCAT---GCCCTGGTGGC--CACTGCTGC-- s saiBol1.JH378144 38050 72 + 18451090 ACTTGTCACTTCTACATTGCTTGGAGGCTGGTCAGGTTCTCTATCCTCAT---GCCCCAGTGGCACTGTTGCTGC-- i saiBol1.JH378144 I 1698 C 0 s xenTro3.GL172681 2230983 61 + 3820989 cctagtCAGATTTGCGTCACA---------TTGCACATCGCAATGCGCATCGCGCCCCCCCACC-------CTGCGC i xenTro3.GL172681 C 0 C 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e myoLuc2.GL429770 26335329 429 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e nomLeu2.GL397366 3698214 91819 + 6458163 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=-1169.000000 s mm10.chr1_GL456221_random 161812 46 + 206961 AGCTTCCTCCTGCCTTT----GACT-TCTAGGCTGGGATGACAAGTCTTCA s nomLeu2.GL397366 3790033 46 + 6458163 AGTTCTCTCTTGCCTCTGGTTGACT-TCTAG----GAAGGCTAAGAACACT i nomLeu2.GL397366 I 91819 I 4 s saiBol1.JH378144 38122 48 + 18451090 AGCTGCCTCCTGCCCTTA---AACTCTCTAGTCCAGAATTCCAACTACTCA i saiBol1.JH378144 C 0 I 2732 s xenTro3.GL172681 2231044 45 + 3820989 -GCTCGTTTCTGCGCATG---CGCA-CCAAAACCAGAGGGGGGCCCGCCC- i xenTro3.GL172681 C 0 C 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e myoLuc2.GL429770 26335329 429 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=-3972.000000 s mm10.chr1_GL456221_random 161858 84 + 206961 GAGACCCAAGTCTT-GCTCTGACCCAATGTCTATGGAGTTGGGGGATGTCCTCAATCCTGGGTC----TGAGAAATCTT---------GTCCTGGCCA----------- s nomLeu2.GL397366 3790083 69 + 6458163 -----CCAAGTTAT-----------AATGCCGAGCATTTTGGT---TCTCTCCAGCCCTGGGTCCCAATGTCAGGACCT---------ACCTTAGTC------------ i nomLeu2.GL397366 I 4 C 0 s xenTro3.GL172681 2231089 96 + 3820989 CTGCCCCTAGTCCTTGCTCTGTTCCTGAGTC------TTTGTC---CTGTTCCATTCCTGCATC---ATGTTTGATCTCCTGGTATTGACCTTAGCC-TGTTCTTTGGA i xenTro3.GL172681 C 0 C 0 e saiBol1.JH378144 38170 2732 + 18451090 I e pteVam1.scaffold_10686 41984 36226 + 49512 T e myoLuc2.GL429770 26335329 429 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=4097.000000 s mm10.chr1_GL456221_random 161942 47 + 206961 CATTCCTGGGTCTCCTGCTGGCCTGAGAAATACCTTGCAAGTGTTTG- s nomLeu2.GL397366 3790152 46 + 6458163 CAGTCCATGCTCTCCCATGGGCCTGAGAGAAGATTTG-AAGTTTCTG- i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 40902 46 + 18451090 CAGTCCAAGCTCTCCCATGGGCCTGAGAGAAGATTTG-AAGTTTCCG- i saiBol1.JH378144 I 2732 C 0 s xenTro3.GL172681 2231185 45 + 3820989 TTTCTCTGTGTCTTCTGCCTGCCCAAACATTGGCCTG---TTTATTGG i xenTro3.GL172681 C 0 C 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e myoLuc2.GL429770 26335329 429 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=2676.000000 s mm10.chr1_GL456221_random 161989 6 + 206961 ATCCTC s nomLeu2.GL397366 3790198 6 + 6458163 GCTTTC i nomLeu2.GL397366 C 0 I 12 s papHam1.scaffold10005 12205 6 + 83766 ACCCTC i papHam1.scaffold10005 N 0 I 441 s saiBol1.JH378144 40948 6 + 18451090 GTTTTC i saiBol1.JH378144 C 0 I 4 s xenTro3.GL172681 2231230 6 + 3820989 ACTTTC i xenTro3.GL172681 C 0 C 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e myoLuc2.GL429770 26335329 429 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e rn5.chr9 92405268 0 + 121549591 C a score=2387.000000 s mm10.chr1_GL456221_random 161995 13 + 206961 CTTCCCTGCTGTC s nomLeu2.GL397366 3790216 13 + 6458163 CAACCTTCCATCC i nomLeu2.GL397366 I 12 C 0 s saiBol1.JH378144 40958 13 + 18451090 CCACCCTCCAGCC i saiBol1.JH378144 I 4 C 0 s xenTro3.GL172681 2231236 13 + 3820989 CTTCCTTGCTGTC i xenTro3.GL172681 C 0 C 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e myoLuc2.GL429770 26335329 429 + 30916457 I e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I e rn5.chr9 92405268 0 + 121549591 C a score=-314.000000 s mm10.chr1_GL456221_random 162008 4 + 206961 --TCCT s nomLeu2.GL397366 3790229 4 + 6458163 --CCCA i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 40971 4 + 18451090 --CCCA i saiBol1.JH378144 C 0 C 0 s myoLuc2.GL429770 26335758 4 + 30916457 --CCCT i myoLuc2.GL429770 I 429 N 0 s xenTro3.GL172681 2231249 4 + 3820989 GGCC-- i xenTro3.GL172681 C 0 C 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I e rn5.chr9 92405268 0 + 121549591 C a score=-3374.000000 s mm10.chr1_GL456221_random 162012 32 + 206961 TACCCAA----TTCACTTCAGCCAGGG----------ACATGA----------------CAA- s nomLeu2.GL397366 3790233 48 + 6458163 CCTCCAG-----CCATGTCAGCAAGGGGAAGGGGCAAACATGGAGTTTTC---------CCC- i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 40975 57 + 18451090 TCCCCAG-----CCATCTCAGCAAGGGGATGGAGCAAACATGGAGTCTCCCCCACCCCACCC- i saiBol1.JH378144 C 0 C 0 s xenTro3.GL172681 2231253 32 + 3820989 ----CAGACCTTTTGCCTCTATCTTGG----------ACTTG-----------------CCAA i xenTro3.GL172681 C 0 N 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I e rn5.chr9 92405268 0 + 121549591 C a score=2126.000000 s mm10.chr1_GL456221_random 162044 24 + 206961 CCAACCCTGGGGGGATCCCTGCTC s nomLeu2.GL397366 3790281 23 + 6458163 CCGACTCCCATGTAAACTATGC-C i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41032 23 + 18451090 CCAACTCCCATGTAAACTATGC-C i saiBol1.JH378144 C 0 C 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I e rn5.chr9 92405268 0 + 121549591 C a score=2573.000000 s mm10.chr1_GL456221_random 162068 12 + 206961 -CCCTCCTAGACA s nomLeu2.GL397366 3790304 12 + 6458163 -CCCTCTTAGAGG i nomLeu2.GL397366 C 0 I 1 s saiBol1.JH378144 41055 12 + 18451090 -CCCTCTTAGAAG i saiBol1.JH378144 C 0 I 1 s xenTro3.GL173352 225204 12 - 507945 CCCTCCTCAGAA- i xenTro3.GL173352 N 0 C 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I e rn5.chr9 92405268 0 + 121549591 C a score=-1927.000000 s mm10.chr1_GL456221_random 162080 60 + 206961 CAGGAGCAAGAGAGA-----ACAGTT----TGAGTTTCTGTGGAGGG-CTTTGAATTGTTTTGTTTTGTT s rn5.chr9 92405268 64 + 121549591 CAGGAGCAAGAGGGAGG--AACAGTT----TGCGTTTCTGCAGAGGGgttttgatttgttttgtcttgct i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3790317 49 + 6458163 CA-GAGCAGCTAAGG-----ACAATT----TTGGTTCAAGGACA-----------TTTTTTTTTTTTTTT i nomLeu2.GL397366 I 1 C 0 s saiBol1.JH378144 41068 39 + 18451090 CA-GAGCAGCTAAGG-----ACACTT----TTGTTTCAAGCACA---------------------TTTGT i saiBol1.JH378144 I 1 C 0 s xenTro3.GL173352 225216 69 - 507945 CC-GGTGAACTGAAATGTATATAGTTCATGTTGATTTTACCTGAAGCTCTATAACATATTTTGTTTTTTT i xenTro3.GL173352 C 0 C 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I a score=-7291.000000 s mm10.chr1_GL456221_random 162140 8 + 206961 ---TGTTTGT---------------------C s rn5.chr9 92405332 29 + 121549591 ---ttgttgtttggttttgatttgttttTTCC i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3790366 7 + 6458163 ---TTGCTGT---------------------- i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41107 7 + 18451090 ---TTGCTAT---------------------- i saiBol1.JH378144 C 0 C 0 s myoLuc2.GL429770 26085895 8 + 30916457 ---TGTTTTT---------------------C i myoLuc2.GL429770 N 0 C 0 s xenTro3.GL173352 225285 8 - 507945 TATTTGCC------------------------ i xenTro3.GL173352 C 0 I 1849 e pteVam1.scaffold_10686 41984 36226 + 49512 T e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I a score=7894.000000 s mm10.chr1_GL456221_random 162148 32 + 206961 CCATCTTTCCATAAAGAAG-GCACTGTCAGGAA s rn5.chr9 92405361 32 + 121549591 CCATCCTTGCATAAAGAAG-GCAGTCTTAGGAA i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3790373 30 + 6458163 ---CTATTGCACAAACAAGTGGACTCCCGGGAG i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41114 29 + 18451090 ---CCATTGCACAAACTAGTGGGCT-CCGGGAG i saiBol1.JH378144 C 0 C 0 s myoLuc2.GL429770 26085903 33 + 30916457 ATGTTTTTGCACAAGCAAGGGGACTCCTGGGGG i myoLuc2.GL429770 C 0 C 0 e xenTro3.GL173352 225293 1849 - 507945 I e pteVam1.scaffold_10686 41984 36226 + 49512 T e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I a score=10255.000000 s mm10.chr1_GL456221_random 162180 36 + 206961 CTGGCTCAGCTTGTCC--TGG----TGTACCCTTCTGCAATC s rn5.chr9 92405393 37 + 121549591 CAGGCTCAGCTTGTCC-CTGA----TGTACCCCTTTGCAATC i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3790403 38 + 6458163 CCGGCCCTGCTCGTCCCCTGG----GCCCTCCTTCCCTGGTC i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41143 38 + 18451090 CTGGCCCTGCTCGTCCCCCGG----GCCCTCCTTCCCTGGTC i saiBol1.JH378144 C 0 C 0 s myoLuc2.GL429770 26085936 38 + 30916457 TTGGTCCTGCTCCTCCTCTGG----GGTCCTCCTCCCCTGGC i myoLuc2.GL429770 C 0 C 0 s xenTro3.GL173352 227142 42 - 507945 TTGGCTTTCTCTTTCTTCTTGTTTTTGCATTTTGCTCCAACT i xenTro3.GL173352 I 1849 C 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e turTru2.JH486691 31615 7861 - 63237 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I a score=1314.000000 s mm10.chr1_GL456221_random 162216 1 + 206961 C s rn5.chr9 92405430 1 + 121549591 C i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3790441 1 + 6458163 C i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41181 1 + 18451090 C i saiBol1.JH378144 C 0 C 0 s turTru2.JH486691 39476 1 - 63237 C i turTru2.JH486691 I 7861 C 0 s myoLuc2.GL429770 26085974 1 + 30916457 C i myoLuc2.GL429770 C 0 C 0 s xenTro3.GL173352 227184 1 - 507945 T i xenTro3.GL173352 C 0 C 0 e pteVam1.scaffold_10686 41984 36226 + 49512 T e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I a score=5920.000000 s mm10.chr1_GL456221_random 162217 10 + 206961 TGTAGGTC---CC s rn5.chr9 92405431 10 + 121549591 TCTAGGTC---CC i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3790442 13 + 6458163 TGCAGGTCTTGCT i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41182 13 + 18451090 TGCACGTCTTGCC i saiBol1.JH378144 C 0 C 0 s turTru2.JH486691 39477 10 - 63237 TGTCATTC---CT i turTru2.JH486691 C 0 N 0 s myoLuc2.GL429770 26085975 10 + 30916457 TCCAGGTC---CC i myoLuc2.GL429770 C 0 I 1 s pteVam1.scaffold_9232 59942 10 + 60856 TGTGACTG---CC i pteVam1.scaffold_9232 I 5204 n 36226 s xenTro3.GL173352 227185 10 - 507945 TGTAGGTC---CC i xenTro3.GL173352 C 0 C 0 e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I a score=-350.000000 s mm10.chr1_GL456221_random 162227 1 + 206961 C s rn5.chr9 92405441 1 + 121549591 C i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3790455 1 + 6458163 G i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41195 1 + 18451090 G i saiBol1.JH378144 C 0 C 0 s xenTro3.GL173352 227195 1 - 507945 C i xenTro3.GL173352 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e myoLuc2.GL429770 26085985 1 + 30916457 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I a score=-16073.000000 s mm10.chr1_GL456221_random 162228 61 + 206961 TTT-------------CTCCTC-CCTGCTACAACATTCCAAAAATG----------------------ATGGATGGG----ACAGGATCTCACAGCAGCAC s rn5.chr9 92405442 65 + 121549591 CTT---------TCTCCTCCTT-CCTGGGACAACATTCCAAAAAGG----------------------AAGGATGGG----ACAGGATCCTACAGCAGCAC i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3790456 94 + 6458163 CTTGTCAGGCC-TCTCCTCCAA-CCCTCTGCCACATTTCAGAAAAGCTGAGAACCCCTTGGAGTTAAAAAGGAGGAGAAACACGGTGTCC----GTAGC-C i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41196 94 + 18451090 CCTGTCAGGCC-TCTCCTGCAA-CCCTCTGCCACATTTCAGAAAAGCTGAGAACCCCTTGGAGTGAGAAAGGAGGAGAAACACAGCATCT----GCAGC-C i saiBol1.JH378144 C 0 C 0 s myoLuc2.GL429770 26085986 86 + 30916457 CCTGTCCCTCCTTGTCCTTCACTCCTATTGCCACATGTCCTGATGGCTGAGGAACCCC----------CCCGCCCCGACCCCCACCCTCC----TAGGC-T i myoLuc2.GL429770 I 1 C 0 s xenTro3.GL173352 227196 61 - 507945 ---TTTAGGCT-TACTCTTTTC-CATCTGCTAGTATGCTATGCGTAATAGGGGCTCCCCAGAGCAC----------------------------------- i xenTro3.GL173352 C 0 N 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I a score=-3275.000000 s mm10.chr1_GL456221_random 162289 14 + 206961 CC--TTGAGA--------------------TTAGAG s rn5.chr9 92405507 16 + 121549591 ACAGTTAAGA--------------------TTTGAG i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3790550 16 + 6458163 CAGAAGGAGG--------------------TTAAAT i nomLeu2.GL397366 C 0 T 81777 s saiBol1.JH378144 41290 16 + 18451090 ATGCAGGAGG--------------------TTAAAT i saiBol1.JH378144 C 0 C 0 s myoLuc2.GL429770 26086072 36 + 30916457 GAGGAGGAGGGAGAGAGTGTCTGAAAACACTCAAAA i myoLuc2.GL429770 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I a score=958.000000 s mm10.chr1_GL456221_random 162303 3 + 206961 AAT s rn5.chr9 92405523 3 + 121549591 AAA i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3708789 3 + 6458163 AAA i nomLeu2.GL397366 T 81777 C 0 s saiBol1.JH378144 41306 3 + 18451090 AAA i saiBol1.JH378144 C 0 C 0 s myoLuc2.GL429770 26086108 3 + 30916457 AGT i myoLuc2.GL429770 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e vicPac1.scaffold_4435 71634 6511 + 111236 I e papHam1.scaffold10005 12211 441 + 83766 I a score=30960.000000 s mm10.chr1_GL456221_random 162306 93 + 206961 TACTTTC----GTTTTTCTTTTCCCCATCAGGGCGGAGCCCTCTCTGGTTT-CTTAGTGCTTGGGCTCACTTCCTGCTCTCAG-CTGT-GGCCCACAGCA s rn5.chr9 92405526 92 + 121549591 TACTTTCTTTCGTTTCTGTTTTCCCCATCAGGGTGGAGCCCTCTCTAGGGG-GATAATACTCAGGCTCACTTCCTGCTCTCAG-CTGT-G-----CATCT i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3708792 87 + 6458163 TACTTTC----ACTTCTCTTTTCCCCATTTGGGCAGAAACCTGTGAGGGTGAGTCAGTCTGTCGGCCGACTTCCTGCTCCGAGTCTGC-G-----CA--- i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41309 79 + 18451090 TACTTTC----ACTTCTCTTTTCCCCATTTGGGCGGAGCCCTCT--------CTCAGTCTGTCGGCCGACTTCCTGCTTGGGGCCTGA-G-----CA--- i saiBol1.JH378144 C 0 C 0 s vicPac1.scaffold_4435 78145 82 + 111236 TACTTTC----ACTTCCCTTTTCGCCGCTTGGGCGGAGCCCTGTCTGGGTCAGTCGAAGAGCA----GACTTCCTGC-CAGGG-CTCAGG-----CA--- i vicPac1.scaffold_4435 I 6511 C 0 s myoLuc2.GL429770 26086111 79 + 30916457 TACTTTC----GCTTCTCATTTCCCGGTTTGGGTGGAGCCTTCCCTGGGT-----GAAGTTCA--CTCACTTCCTGCTCAGGG-ATCA-G-----CA--- i myoLuc2.GL429770 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e papHam1.scaffold10005 12211 441 + 83766 I a score=2390.000000 s mm10.chr1_GL456221_random 162399 4 + 206961 AACA s rn5.chr9 92405618 4 + 121549591 GACA i rn5.chr9 C 0 I 1 s nomLeu2.GL397366 3708879 4 + 6458163 GCCG i nomLeu2.GL397366 C 0 I 4 s papHam1.scaffold10005 12652 2 + 83766 --CA i papHam1.scaffold10005 I 441 I 227 s saiBol1.JH378144 41388 4 + 18451090 GCCA i saiBol1.JH378144 C 0 I 4 s vicPac1.scaffold_4435 78227 4 + 111236 GCCT i vicPac1.scaffold_4435 C 0 C 0 s myoLuc2.GL429770 26086190 4 + 30916457 GCCA i myoLuc2.GL429770 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I a score=10141.000000 s mm10.chr1_GL456221_random 162403 72 + 206961 ----CACAGAAGCCTGGGCAGACACCAAGGGA--TCAGAGCTCACTGTCCCAGGCCCCAGGCAG------CTG-TGGAAGATGGA s rn5.chr9 92405623 73 + 121549591 ----CCTGGCAGCCTGTGCAGAAGCCCCAGGA--TCAGAGCTCACTCTCTCAGGCCACAGACGG------GTGTTAGAAGATGGA i rn5.chr9 I 1 C 0 s nomLeu2.GL397366 3708887 77 + 6458163 ----GCACGCGGGCTGGGCCGA---CGGGGGAGCTCATAGGCCAGGCTCTGAGACC-CAGGCAGGGCCTGGGGTGGGACGATGGC i nomLeu2.GL397366 I 4 C 0 s saiBol1.JH378144 41396 77 + 18451090 ----CCAGGCAAGCTGGGCTGA---CCGAGGGTCTCAGAGGCCAGGTTTTGAGGCC-CAGGGAGCGCCTAGGGTGGGAAGATGGC i saiBol1.JH378144 I 4 C 0 s vicPac1.scaffold_4435 78231 66 + 111236 CC-CGGGCCCGGGCTGGGCCGA---CCGGAGGGCTCGGAGGCG--------------CAGGCCGGG-CTGGGGCGGGAAGATGGC i vicPac1.scaffold_4435 C 0 C 0 s myoLuc2.GL429770 26086194 68 + 30916457 CAGCAGAACCAGGCTGGGGAGA---CTGGAAGGATTAGCGGTC--------------CAGGCAGTGCCCAGGGCAGGACGATGGC i myoLuc2.GL429770 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e papHam1.scaffold10005 12654 227 + 83766 I a score=27786.000000 s mm10.chr1_GL456221_random 162475 55 + 206961 A------GGGAGCAAGGGCAGCCCCAGGTGGGTCTTTTTCCCT----CTGTAACCTTTCCCTCTG s rn5.chr9 92405696 54 + 121549591 A------GGGAGCAGCCTCAGCCCCAGGTGGGTCTTCCTTCCT----CTGTCACCTTTCCCTCT- i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3708964 65 + 6458163 AGGTGGGGGCAGCGACCTGAGCACCAGGTGAGTCTTTATCTCTCTTCCTTTAACCTTTATCTCTG i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41473 65 + 18451090 AGACGGGGGCAGCGACCTGAGCACCGGGTGAGTCTTTACCTCCTTTCCTTTAACCTTTATCTCTG i saiBol1.JH378144 C 0 C 0 s vicPac1.scaffold_4435 78297 61 + 111236 CGGT---GCCAGGGAGCTCAGCTCCAGGTCAGTCTGTCCCCGCTTG-CTCGAGCCTTTCCCTCTG i vicPac1.scaffold_4435 C 0 N 0 s myoLuc2.GL429770 26086262 64 + 30916457 CAGTGGGGGCAGCGACCTCAGCACCAGGTCAGTCTCTGTCTCCCTT-CCTTTAACTTTCTGTCTG i myoLuc2.GL429770 C 0 C 0 s sarHar1.chr4_GL857025_random 126086 50 + 675770 ------AAGGAGC-----CATCACCAGGAGAGTCATCAGTCCC----CAGGAGCCTCTGCTTCTG i sarHar1.chr4_GL857025_random N 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e papHam1.scaffold10005 12654 227 + 83766 I a score=-11330.000000 s mm10.chr1_GL456221_random 162530 67 + 206961 ACAACACTGTTGAT---TTTATGTCTTGAATTA----------------GTGACCCAAGCTTCAGTCAGTCCAAACCGCCTGACAT s rn5.chr9 92405750 66 + 121549591 ACAGCATAGTTGAT---TTTATG-CCTGAGTTC----------------CTGGCCAAAGCTTCAGTCAGTCCAAATCACCTGACAT i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3709029 49 + 6458163 GCAGTATTGGAGCT---TTCATGCCTTTAGTTCGGTTT-----------CTGTCTAAAGCTTC----------------------- i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41538 56 + 18451090 GCTATATTGCAGCTCTCCTCAGGCCGTTTGTTCTGTTT-----------GTGTCTAAGGCTTCACTT------------------- i saiBol1.JH378144 C 0 C 0 s myoLuc2.GL429770 26086326 53 + 30916457 GCTGTGCTACTGCT---TTAGTGTGTGTTATTAGACAC-----------TCGTCTAAACCTTGACAT------------------- i myoLuc2.GL429770 C 0 N 0 s sarHar1.chr4_GL857025_random 126136 65 + 675770 ACAAAACCCCAACctattccctgccctcaagatgGTCTATGATGGGGAAATGAACAACACGCCAT--------------------- i sarHar1.chr4_GL857025_random C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e papHam1.scaffold10005 12654 227 + 83766 I a score=-9516.000000 s mm10.chr1_GL456221_random 162597 87 + 206961 GAAGTAGCTTTGGCCTATAATGAGAGGGGATAGATTTGGGGGTGATGAG-GCGAAGAGTc---agacagagagagagagagacagagagag s rn5.chr9 92405816 80 + 121549591 GAAGTAGA-TTGGCCTATAGTTTGAGGGGACAGATT------GGACGAG-GGGAagagag---agagagagagagagagagagagagagag i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3709078 33 + 6458163 -----GGTTTAGTCCTGCTTTGCAAGAACGTAGGTA------GG----------------------------------------------- i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41594 74 + 18451090 ----TAGTTTAATCCTTCTTTCCAAGAACATAGGTA------TG-TGAT-GTGATGTGAT---AGAATGAAAT-GAAAGAGA-AGATAATG i saiBol1.JH378144 C 0 C 0 s sarHar1.chr4_GL857025_random 126201 73 + 675770 ------------GACTACGGATATAGAACACATATG------GGGTGGGTGGGATGTGGTCCCAGAAGGAAGGCGCGAGCAGCGGGAAGAG i sarHar1.chr4_GL857025_random C 0 N 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e papHam1.scaffold10005 12654 227 + 83766 I a score=-429.000000 s mm10.chr1_GL456221_random 162684 3 + 206961 agg---- s rn5.chr9 92405896 3 + 121549591 aga---- i rn5.chr9 C 0 C 0 s saiBol1.JH378144 41668 7 + 18451090 AGGAAAT i saiBol1.JH378144 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709111 0 + 6458163 C e papHam1.scaffold10005 12654 227 + 83766 I a score=-282.000000 s mm10.chr1_GL456221_random 162687 1 + 206961 c s rn5.chr9 92405899 1 + 121549591 g i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3709111 1 + 6458163 T i nomLeu2.GL397366 C 0 C 0 s papHam1.scaffold10005 12881 1 + 83766 C i papHam1.scaffold10005 I 227 I 612 s saiBol1.JH378144 41675 1 + 18451090 C i saiBol1.JH378144 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I a score=912.000000 s mm10.chr1_GL456221_random 162688 5 + 206961 agagt s rn5.chr9 92405900 5 + 121549591 agaga i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3709112 5 + 6458163 AGTGT i nomLeu2.GL397366 C 0 C 0 s saiBol1.JH378144 41676 5 + 18451090 AGATT i saiBol1.JH378144 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e papHam1.scaffold10005 12882 612 + 83766 I a score=749.000000 s mm10.chr1_GL456221_random 162693 10 + 206961 gagagacaga s rn5.chr9 92405905 10 + 121549591 gagagagaga i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3709117 10 + 6458163 AATATAATGA i nomLeu2.GL397366 C 0 C 0 e saiBol1.JH378144 41681 0 + 18451090 C e pteVam1.scaffold_9232 59952 36226 + 60856 I e papHam1.scaffold10005 12882 612 + 83766 I a score=-1888.000000 s mm10.chr1_GL456221_random 162703 94 + 206961 gacagagacagacagacagacagacagacagacagacagacagacagacagacagacagacacagagagagaaagagagagaACATCAGCATAC s nomLeu2.GL397366 3709127 28 + 6458163 AATAAA---------------------------------------------------------AGAGAATGTAATAAGGAAATCA--------- i nomLeu2.GL397366 C 0 C 0 e saiBol1.JH378144 41681 0 + 18451090 C e pteVam1.scaffold_9232 59952 36226 + 60856 I e papHam1.scaffold10005 12882 612 + 83766 I e rn5.chr9 92405915 0 + 121549591 C a score=41270.000000 s mm10.chr1_GL456221_random 162797 558 + 206961 ----CTGAACACTTGAGTTTGATATCCGCTGCCGAGAGAGACAAGCTTGCCAGATTGTACACAAGTCA--TAACTGTCTTTATGACCACTGCTCAGCTGTCAGAGGGAGACTTTGGCCA----CAGCTGACAGGGACTCCTGTGGCATGGTTCTGTTATTATCTTGTGA--CCCAAGCGGTCTCA-GTCCCTCTGCCTCTCTCTGCATTAGAGCAGGACTCCTGCAGGAAAGTCACCTCAGG-GAAGA-AGTCCAAATAGCAGACGATGCTGGGTAAACAGTTGG------------CACCCGCTGCCCTGTTTCTCTTACCTGTC-TGGCAGGA----CTTGTCACCAAGAAAGCTGTGCCCA-GGCTCACTCATAGTTTAAGCTCTTAC-TGTCAGACCTTGATCCAAGGAAGACAAAAGACAAGAAAGGGCCTTGATTGCAAAGGTCAGGGCAAGCCACATATTTCTATTTCC-CTTTAGTTTTCTGTTCT-AGGTGGATGTTAGCTCTGG-CAGGAAACAGTAG--AATTCTG--TTTGCTCCAGTAACTCAGATGCGCTACTATGCATAAATAATGTTGGGCAGTGTTTTTGTT----- s nomLeu2.GL397366 3709155 544 + 6458163 GATTTTTACAACCGCAGCAGGACAGCTGTTT--GTGTGAGTCCAGCTTGCCATA----ACACAGATGACTTTTCTTGTTTTGAAACTACTGCTCAGCTGGC--CGGGGCACTCTGAACAGTCGTTTCAGTCA------TTTGTGACTGAGAGTTATTATTTCCTCATGGTCTCCGAACCCTTTCACATCCCTCTGCCCT-CTCTA---------------CCTTCACATATGTCATGTCAAA-GAAGGTAGTTTAGGAAATAGACACTCCAGGGTAAACAGCTGGCTTACTTTTGAACACTGGAAACTGTGG---TTTCACCTGTCTCGGGAAGAGGCCTGGGTCAGCTTTGGGGCTATTTCCTTGACTGACTCAGGGTGAGAATTCTGATACAATTGACCTTGATCCAAAGAAGGAAAAAGAAGGAAAAGGTCCAGGATGGCAGA---------AAGCTAAATATTTTTATTTTTACTTCAATTTCCTGTCCCAAGATGGGGGATGCCGCTGACCAGAAAAGAGATGGAAATCCTATCTTTTCTCTAGTAAC------GAGTT------TATAAATAACATTACTTAATCtttttatt----- i nomLeu2.GL397366 C 0 I 7549 s saiBol1.JH378144 41681 531 + 18451090 ----TTTAAAACGGGAGCAGGACAGCTGTTG--GTGTGAGTCCAGCTTGCCGTA----ACACATGTGAC-TTTCTTATTGTGAAACTGCTGCTCAGCTGGC--CAGGACACTCTGAACA----TAGCAGTCG------TTTGCGGCTGGGATTAACTGTTTCCTCATGATCTCTGGACCTTTTCACATCCCTTGGCCTTCCTCTG---------------CCTTCACATATGTCATGTCAAATAAAGGTAGTTTAGAAAATAAACACTCCAGGGTAAACACCTGGCTTACTTTTAAACACTGGATGCTGTGG---TCTCACCTGTCCTGGCAAGGGGCCTCTGTT--------GGCTATTCCCATGACTGGCTCAGAGTCTGAGTTCTT---TGATCAACCTTGATCAAAATAAGGAAAAGGAAGAAAACAGACCAGGACGGTAAA---------AGGCTAAATATGTTAATTTTTACTTCAATATCCTGTTCCAAGATGGGGGATACCTCTGACCAGAGAAGAGAAGGAAATCCTATCTTTTCTCTAGTAAC------GAGTT------CCAAAATAACATTACTTAATCTTCTAaatttttt i saiBol1.JH378144 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e papHam1.scaffold10005 12882 612 + 83766 I e rn5.chr9 92405915 0 + 121549591 C a score=1148.000000 s mm10.chr1_GL456221_random 163355 28 + 206961 AGTACAAAGGAAGTA----ATACATTTTTTTT s saiBol1.JH378144 42212 32 + 18451090 aatacagaagaaatacactatacattattgtt i saiBol1.JH378144 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I e papHam1.scaffold10005 12882 612 + 83766 I e rn5.chr9 92405915 0 + 121549591 C a score=573.000000 s mm10.chr1_GL456221_random 163383 2 + 206961 CA s papHam1.scaffold10005 13494 2 + 83766 CA i papHam1.scaffold10005 I 612 C 0 s saiBol1.JH378144 42244 2 + 18451090 ca i saiBol1.JH378144 C 0 I 1427 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92405915 0 + 121549591 C a score=68.000000 s mm10.chr1_GL456221_random 163385 3 + 206961 GTA s papHam1.scaffold10005 13496 3 + 83766 TTA i papHam1.scaffold10005 C 0 N 0 e saiBol1.JH378144 42246 1427 + 18451090 I e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92405915 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456221_random 163388 1314 + 206961 CTGCAGATGAACCTCGGGCTTTGAATATGCCTGATTATATATCTCTATttattttttagaactttgactcaaggttttgctaagttactcacaccagtgtggaactcagtgtataggttaggctgaccttgaacttgtgagcctctgagtgactgaggttacaggcctagaccaccaggaccATTTCATAATAAAATGTGGTTTATAAGCTTTCAAACTTGTGGAAATATAGAAAGGATAAGACCCCTCAGCTGCCCCCATATACTTAGCCCACTCCTTGGGCTCAATCTTCCTTATATTATTTAttttttattttaaggcacggtctcttggtcttttttattatgttgtccaggctgacctgaaacttgctatgtaaacctgcctgtacttggacttacaatagagatccatctgcctctgcctcccaagtacagggattaaaggtgtacaataccatacctggGTCTTTCTTATTGTCTACAAAATATTTATTGGGCGCGCGCGCgtgcgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAAGAGAGAGAGAGAAAAGAgtgtgtacactattagggaatgtgcctttggaggacagaagaggatgtcaggtcccctgtagttggagttatagatggctatgagctgacagactgggagctgaactccagtccttttgaagaacaatcattgctcttaactgctgacctatctctccagccccTTTATCTTTCCCAATGCATTTCATGTATAATTTGTTTTCGTTAATGCGTATTTTCATTTTGTAATGGTGTGCGGTGTTTTCAGCCTTAGCCTGTTTTAAAGAGTAGAAGCCTTGGCGAGGTCCTCCATGTAATGAGGGTACACTTACTTTACTCTTTTTCACAGCTCCCTGCCGTTCAGAGCACTTGTATATGAACCAAGAAATGTATCATTCAATGTAATGCTTATTtatgtgtgcacacgtgcggcagctttgcgtgtgtcatggagtcagggggcaaaatagaggaggtggtacctcccttcttccgtgtggcttctgggatctgagccaagtcatcaggctgggttgctggctccttttccactgtgccagcttgccagtccTTTCCACGAGTTTTAAACCAGTTTAAACCAGTCTCCTTTTGATGAACTTTCGCTCACTACCATTGTTGACTGTCACCCACAAGCTGTGGGAACGTTGGCCATATAATGCATTATGCTTATTGACTAGTATTTTGTCTTGAATCAAAGATATAATCAGGGGACTACCGAGACAAAGGGCGTT e saiBol1.JH378144 42246 1427 + 18451090 I e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92405915 0 + 121549591 C a score=5873.000000 s mm10.chr1_GL456221_random 164702 468 + 206961 ACTTGCTTTATAGACGCTGCCAAATGG-CTGCTGAGGAGGCAAAGTCTATGCATTTCCATGCCAGTAGCTACTGAGGTGAGGCGTCTTCCT-CTCTCAGCCCAAGTACACAAAGGCAAT------AGAGATGTGTGCTGTTTT-----GCAGTCTCTCTATTAAGCAGGAAATG-GGTTGCGTTTCTTATGCACTGGCCCTTCAGCTCCCTCTCCAGCACTGGTCTGTTTTCGATATCTTTAGTCAGGTGTTCATTTATTTTTTAACA----GATTTAATTCATTTATTTTTCTTGTATAAAAACCCCTATGTGGTTTGTATATGCACTTCTTCTATGCACTGGCTAAATGTCTTGAGAAACCGTAGCTATATTCTCCCTTGTCTTTTGGCACTGTGTATAGTGGGTTTCCTCTTATACAAAGTTAAATTTGAA------------TTGTAGTATTGATCTTGTAAGAAAGACACAT-----CCATAAATAAAGTGATAATGG s saiBol1.JH378144 43673 443 + 18451090 acttg-tttataggtcctgccaaattgtctttctaggaggctgaatgaatgtatttc---accactagcaattgagatgaaccatcttcctacaaacagccacagtttgcaaaggtgatgaatgaagagttacattttgttttaatttgtattttccttatgatgtggaacatttaacagcttttcatgtttcttggccatttaaattccc-------------------------tcttctataaattgcttgtttattttttgccaatgtgattgagtt-atttgtccttctttttcatga-----tatggga----------------------gaattcactaaatattctgT--AAGTATAAATATACTTTTC-TTGTCCATTACCTTTGTGTATGGTGACTTTTATCTTATTAAAGCTTAAAATTTTATGTATAAACTTCTTGTGATACGGATTTTTTAAGGTAGATGCACGTTCGTTATGAACGAAGTCACACTGG i saiBol1.JH378144 I 1427 N 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92405915 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456221_random 165170 3233 + 206961 AAGCCACTGAGAAAATCAAGCACCCTTGGGGTGTTGGGGCTTTTGTGTTTCTGCTTGCCGTGGCTGCCTttgaacctagagctttgtgcttgccgagcaagttctctacctctgaactatatctccagcccTCCCTTTACTttttgatttgagacacaatctcattcagttgcccaggatagccttgaaactgtaattttcctgtttcagcttcctgagtccttcggcttaaaggcctgccctacctggcctggcATGAGTTTTTGTTTGTTTTGTTTGGATCACAGTTCTGTGTTCTTCAGGTAACATGTGGGAATCTATCTTTATTCAGGGAAAGTTTGTTTCTTTTCGTCTGTCTCTTTTTTTAGACAAAAGGATTCTACCCTGGAGCCACATTAGCCCCCCAATTCTCACTGCTCCTGTGCTATCTTTGTTAGGATTTTAATCTTTTTATGTGTAAGGCTGTCTCCTGGTCTTCCCCCATGACAATGACTTAATGTTTAGTAGCTTGGTTTCTTTCCTTTACAGCTTAAAAAAAATCTCtgtgtgtgaatgtagtgtgtgtttgtgtgagcgagtgtgtgcgaatgcagtattgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgAATACTGTGCTTACATGAGCATGTGTGTGTAAATGCAgtgtgtgagtgtgatggtttgtatattcttggaccagggagtagcaccctttggaggtgtggccttgttgaagtaggtgtgtcactgtgggtgtgggcataagatcctcaccttagttgcctggaagtcagtcttccactagcagcctttggatgaagacatagaactctcagctctgcctgcaccatgccttcctggatattgccatgctcccaccttgatgataatggactgaacctctgaacctgtaagccagccccaagtaaatgttgtttttttaataagacttgccttggttatggtgtctgttcacagcagtaaaatcctaactaagacagtgagtatgtgggtgtatgtatatgtatataaatgcactgtatgtgtatgtgtgtgaatgttgtttatatgtgcgtgtgtggatgcagtctatgtgtatgtgtatgggtgttgggtatatgtgagtatgtgtgtgtgtgaatgcagtgtgtgtgtgtaaagggctgcaatatatgtgccaccactagatggtgctaaacctctttgtgcgcagctgcgagagcacagccagccaaagtcaccagtccatcaccggggcttttgcccaacctctgggggctttaacctatccccagggtgcatgaggatcatgggtgttgctaccagtcctagtttagacacgtcaccaaaagtatttaagccacacactttctgagctttctttgtctacctcaatatgatatagaagtaaaagttaaccgtggaagaatctggtgtgtcctgtgtttatttcccgcgggacggggataagctcgggatatgtgtgtctgtgtgtatctgtgtattaacccaatatatatatatatatatatatatatatatatatatatatatatatatatatatatacacacatatatatacatatatatattatgtgtgtgtatctgtgtattaacgcaatatatacatatacatacacacactatatatgtgtgtgtatatATATATCTATATATCACAtgtgtggagatcagaggacaatgtggggaatcgtgctccccttgcaccttgtttgagtttgaggcagggtctcctgtttgcctgtgtccactaggttagttggaagttgaggttcccagggagtcccctgcctccaccacctatggagctgcaggtgtgctggaacttcaggcatctgctgtagcatccagcgtttatgtgaattctgggaagctgagctcaagtctgtacacttggggatcaagtcactgagccacctagctagtccTGATTTCTAACTGAATCTTAAATAttatttcattgttttatgtgtatgagggctttgcctgcatgcatgtctgtgcagcatatcatgtctggtgtcccaggaagtcagaagagtgtattatattcccaggagttccagacaggtgtgacctaccatgtgggtgctgggaactgaatctgggtcctctggaaaggcagccagtgttcttaaccactgagcaatctctccatctccTAATTTCTAATTTTTAAAGAAATACATTGTGGTGAAGGATAATATAAATTTTACAAGGGGTCCTAGCTCATCTCCATGGTTTTGTAAGCTCCTCTGTAACCTACATCTCTGCAACCTTGTTAACTCCCTGCCCATCTTCACCATGTGTCTACATTGGTTCTTCTGCTCTGCTAAGTGCTTTGAGAAGACTTTCCTTATAGCTTCTGGATCATTCTTCTAGACGGGGTCTTCCATTCCACTGTCCTTTGTTTATTATATGGTTGCTGTGGTTATACCCCATCACTATGGTTGGACATTGGGCTGCTCACACCACACTTAGATTACCACAAGGTGTAACCTGGGTGTTGTTTTTGTTTTCTATCTGAGGTCAGTTTCTAAGGACATCATTGATCAATCAATCACCAAGGGATCCTATATTCCTTTGGTTTCTGGGCACTCTCTTCTCTGCCATTGGCTATGGTGGCCCCTCTGCCATAAAGCCTGAGGTGTCATCACAGTGGGTCCTGATCAGTGAATGCACTGTGTGAATGggtttggatgagaatggctcccatagggccacagatttgaatatttagtcaccagggagtggtactacttgtaaggattaggaggtatagtcatgttggagaaagtgtgtcactgggagttggcttagaggtttcaaaaagcccattctaatcccagagtctccctcttcctgcttccagctggtccagatctagaactctcagctacttctccatcaccatatctttctacatctggccatgctctctgacctgatgacaattcaaattgacaagtcaaattaaacctctgaaaatgtaagcaagccacaattaaatacgttcttttttaagagttgctacggtcatggtatgtcatcacagcaagagaacactaaccgagacaCACTGTATTTGTGAGACCTCATTTGCTGTTCCCAAGCTACAGCAGCACAGAACACTTCAAAACAGGCAGAGCTCACATAACATAGAGGAAAGCACAGACCTAAGCTTGGAGCATT e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92405915 0 + 121549591 C a score=31115.000000 s mm10.chr1_GL456221_random 168403 533 + 206961 TCCAGCATGGGTCTGTCCCTTCCTCTTGTTCATTGTGAAGATGGTATGTGGTCTCTGAGTGTGGTAGGACTGGACTCCTGTTGACTGTCACCCTGTGTGGTCGCTGGTTTCTGTCCCAAATATCTGTAAAAGTGGTTAGACTCAAGTTTCTGGCCCTGAAAATGGCTCAT------------------------------------CTTTTATTTCTTTTAAAAGTATAAAGTGTGTTTTAAAATGAGATTTAttaatttt---ggttttctgtattagtgttttgcctgcatttgtgcatcacttatg-----------tgcagtgtacaccatatatgcttgttgcccatagatgtcagaagagggcatcagatgcccagcaacagaagttatgtgtggttatgaaccaccatgtgagtaatgggagtccaacccatgccctctg---------------------catggagccatctcaacagcCCCTGACTCAAATGTCTTGACCCTTAAGTCTTATGTTACCCCGTCTCCAGTCCCTTTGTCATCTATTGTATTTTTATTTCCTCTTCTTGTTTTATTTGTGGGGTAGAGGAATTGGc s rn5.chr9 92405915 597 + 121549591 TCCAGCATGGGTCTGTCCCTCCCTCTAATTCAT-GTGAAGATGGTATGTGGTCTCTGAGTGTGATAGGACTGGATGCCTATTGACTGTCACCCTGTGTGGCTGCTGGTTACTGTCGCAAATACCTATAAAAGTAGTTGGACTCAAGTTTCTGGCCCTGAAAATGTTTTTTAAAAAAAGAAAAGAAAAGAAGAAAATGGCTCGAGTCTTTTTTTTTCTTTTTAAAGTATAAAGTGTATATTTAGATGAGATTTATTAATTTTGGGGGTTCCTtgtatctgtgttttgcctgcatttctacaccatgtatgcacttgcttgctgttgtatacaccttatgtgcttgttgcccatagatgtcagaagagggtaccggatgcctgggaacacaagttacgggtggttctcagccatcctgtgagtactgggaatccaacccaggtcctttgcaggagaaacaagtgattaaccatggatctatcccaacagcaccTGGCCCAAGTGTCTTGAACCTTAAGTCTCATGCTACCA---GTCCCTTCCCTTTGTGATCTACTGTGTTTTCACTTCCCCTTC---TTTTATTTGTGGGGTGAGGGAAGTGtc i rn5.chr9 C 0 I 89 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I a score=0.000000 s mm10.chr1_GL456221_random 168936 92 + 206961 aagaaagggtttctctgtgtatccctggctatactggaacctgctctatagaccaggctactcttgaacccagagatctgtctgcctatgcc e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92406512 89 + 121549591 I a score=21545.000000 s mm10.chr1_GL456221_random 169028 438 + 206961 AAGGAAGTCTATTACTCTCCgggctagagagatagtttagcagtta---------agtggatgctggttgaatttcaggcaccaacatggtagtttgcagagacctataactgaagttccaggaaaatctgacatccatggacaccaagcacacatgtagtacactaatatacatgcagttattatattcatatacataaatgaaaaacaaTG----TCTTTTTTAGAAGAAAAGAAACCAGATGTTCT--GCAATACaaggaaggaaggaaggaaggacggaaggaaggaaggaaggaaggaaggaaggaagaaggatggaggaaaggaGAAACAAAG----ACATAGAAATAGAGGGAACAGAAGAGTAATTTGTAAAGAAAAGTTAA--TGGGATTTTTCAAATGGATAAATGACATCAGCTCCTAAACTTAGGAAAGTCTAAATGGGATGAATTA s rn5.chr9 92406601 422 + 121549591 AGCAAAGCTCATTACTCCCTgggctaggcagacagtttaacagttacatgtactcagaggatactagttcaattcccagcatgaatatggtggtttccagagacctatacctgatgttccaagggaatctgacatc-atagacaccaaccacacatgtggtacactaacatacatgcaggtattggattcatatacgtacattaaaaataaCAAGACTTTTTTTTAGGAGAAAAGAAACAAGGTGTTCTTTGTAAGACaatgaaggaaggaaggagg------------------------------------aaggttggaggaaaggagaaaggaagCAGGACACAGAAACAGAGGGAATAGGATAGTAATATGTGAAGAAATGAGAAGTCAGGATTGTTCAACTGGATAATTGACATCAGCTCACAAACTTAGGAAAGTCTAAATGGGATTAATAA i rn5.chr9 I 89 I 194 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I a score=9661.000000 s mm10.chr1_GL456221_random 169466 169 + 206961 AAACAAAACCTTTTGTGAGgttgatttctatcatgaaagcatcctgagtttgccaaaagctttttctgcgtcctttgggggtga-------tatgtcctgtattctattcatgagatgtactccagttatccatttgcaaatgttgaa--atttttgcTTTGCTTCACCTAAGTGGGG s rn5.chr9 92407217 177 + 121549591 AAACAAaactttttgagaggtttatttttatcatgaaagcactctgaggtggcc-aaagctttttctgcatctgtagggggtaatgtgatttatgtcctggattcaattaatttgatgtagtccatttatccatttgcaaatgctgaagcactcttATTTTGCTTCACAGAAGTGGGG i rn5.chr9 I 194 I 409 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I a score=0.000000 s mm10.chr1_GL456221_random 169635 385 + 206961 Gtgtaaagcctgattttgtgtgtcaacttaacacaagctagagttatcacagagaaaggaacctcccttgaggaaatacctccatgagatccacctgtaaggcattttctcaattagtgatcaagggggaagggcccattgtgagtggtgccatccctgggctggtagtactgggttctataagaaagcaagctgagaaagccaggggaaacaagccagtaagcagcatccctccatgtgtgagttcctccagtgtgagttcctgtcttgacttcctttggtgattaaggcctatgtgaaagtagaagctgaatataccctttcctccccaacttgctacatggtcatgatgttttgtgcaagaatacaaaccctgactaagaca e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I e rn5.chr9 92407394 409 + 121549591 I a score=69000.000000 s mm10.chr1_GL456221_random 170020 1228 + 206961 TGGAGTGACAGGAAGTACCTGACACTTGTGGAATGTCTTCTGGCTTGGTTTTCTGTTCATGAATTATATAAAGGAGGCTCAGTAGCCAGACAAGTTGATAGTTTATGCTCCTTAGACACAAGTGCCAAAAGCTATCCTTCACCGGAAGGAAAGGCTGTCAGTTGTGTTACCCATTATATCTCTGACACCAGCTGGCTTCTTCTGAGCCTGGAATTGGTGATTACTTGGGATCCTTGGTCTACTAAGTCTAGAAGCTATGCTATGAAGTTAGCCAGGTTGCCTGTTTGGCTATTTGCTAGCTGAGGCCATAGGTAGGCTCTGAGCCAGATGGGGTTACTTGCT-------GCTTAGTTAGGTAGAGCCAAATAACACTCTGCTATGAGATAGAGACAACACACTGTCTTGGGGAGTAGACAGGCAGACAGGCAGTGTGTCCAGACTGACCTGCTGGCTAGGCAGGAATGGTAAGTATGTTCCTTGGACAGATGG--------GCTGCCTTGGCAGAGCAGAACAGCTGACTGGGCTCTCCCACCAAGAGTGCCACTGATAGTGGAGACACAGCTGCAAAACTACCCCCCCATCTTATCATTCTGCTCTGTTTGTTGTTTTCCAGTGGTCTATTGAGCCATTCAGTGTTC---ATTGAGCAAGACAGATGGAGACATCCACTGGGACA-----GAGTTCTGGGG-AGCTCTATGTTTGTTTCTATACTGGTTCCCAGTATAGAGAGACCTTAGGTCCAGGGTCACAATCTTGGTAAGGCTAAGGAGGAGACTGAGGAGGGACAATGCAGCCAAAGCCAATGCTTCTCTTGCCCTTCACACATGGCTTTGGTGGCCTGTGGGTAAGGTTAGTTTCATCTTCCAGTTGTTGTATTTGATTGTGGGTGGGTGGTAGTTGCTGGTTGGTCATTCTGTATTGGGGACTTAGTCATAGACATCCTGACATCAACAAGATttgttgttgttgttgttgttttgttCTACTTAATGCTGTCTGTCACTTCCTGGCATTCCTAGTCAGACTGTGGAAACATCACTCAGGTAGTCTCTTAGCGTggtttctgtggcagtgatacaacactctgactaaatacaatttgggaaggaaagggtttaactggcttatagttccacatcatagtccatcatggaagtcagggcaggaactcaagcagaatcctggaggcaggaattgaagcagacaccgtggcatagcttactggtttggtcaacttg s rn5.chr9 92407803 1183 + 121549591 TGGGGTGACAGGTGGTGCCTGACAACTGTGGAAAGTCTTCTCACTTGGTTTT-TGTTCATGAATTATATAAAAGAGGCTCAGAGGCCAGAAAAGTCAACAGTTCCT-CTCCTTAGTCACAAGTGCCAAAAGCTACCCTTCCCAGTTAGGAAAGGCTGTCACTTGGGTTGCCCATTATTTCAATGACATCGACTGCCTTTTtctgaacctggacaggttgactatttgggatccttggtctgccaagtctagaagctatgctctgAAGTTGGACAGCTTACCTGTATGGCTGTTTGATCGGTGAGGCTATAAGTAGGC-------CAGATGGGGTTGCTTGCTATTATGTGCTTGGTTGGGTAGAGACAACCA-TACTTTGCTATGACATAGAGACAACACACTGTCCTGGGGAATAGACAG----ACAGGCACTGTGGCCATACCGGACTGCTG-CTAGGCAGGAACCATAAGTGCCTTCCCTGGAGAGGTAGAGGCACAGGCTGCCTGGGCAGAGCAGAGCAGCTGACTGTGCTCTCCCACT--GAGTACCTCTGATAGTGGAGACAGGGCTGCA--------CCCCCATCTTATCATCCTGCCCTGTTTGTTCTTTTC--ATGGCCTCCTGAGTCCTTCGGTGTTCTTCATTGAGCAAGACAGAGGGAGACCTCCCGTAGGGCACGTCAGAGCTCTGGGGGAGCTCTATGCTTGTTTCTG----GTTCCCCAGTATAGACAGACCTGAGGTCGAGGGTCACCATCTTGGTAAGGCTAATC-CTAGACTGAGGAGGGACAATGCAGGCAGAGAAAATGCTTCTCTTGCCCTTCACATGTGGCTTTGGTGGCCCATGGGTAAGGTTAGTCTTCTCTTGCAGTTGTTGTGTTTGAGT---GGGGGGAGGTAGTTACTGGTTGATCATTCTGTGTTGGGGTCTAAGTCATAGACATCCTGACATCAACAAGATGCCTTTTTA------------------ACTCAGTGATGTCTGTCACCTCCTGGCATCCCTATTCAG--------------AGTCATGTAGACtcttagcttggtttctaaggcagtgataaaacaccacgaccaaaaacaacttgggaaggaaagggttaatttggctgatagttccacatcacagtccatcactgaggtcagggcaggaacccaagcagaagcctggggtcaggaattgaagcagagac--tggcatagcttactggcttggtcagtttg i rn5.chr9 I 409 I 1450 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I a score=62815.000000 s mm10.chr1_GL456221_random 171248 1043 + 206961 ctttcttacatatcccagaacaacctgtcctgaggtggtggtgcctacagttagctgtgcccactcacatcaatcatcaatcaagaaaatgccacacagacatgcctaacaggcaaccgttatggaggtattctttttcaattgaagttcctcttttcaaagaactttagcttgtgtcaagttgacaaaaaccaaacaAACGCAATTTAATAA----TCCAAACTAAACAGGACATACTGTGTGTT----AGTCATATTTCCTCTTTTGCTTGTACACCAGAG--AAAACAGTGCAGCCT-------TTCTCACTCTGTGCAGCATTTTGAGTGTCCACTTTCATTTT--------------------------------------ATGTATTTGAATATAAATGCAATGACTTTCTacagagctgtacacccagcaccacagtattagtttaggatgtagacctcccccatccctaaaagaatcccttgcagctatgtgcagtccattcttgttcccctaagtc-aagcaaccactaatacatctttctgcatagatttcatttattggcgtttcttgcaaatggaattatacattatttagccttctgtgtttgttttctttcattaaggaataaatgtttttgaaattcatccacattgtagaatgtattagcattttgtccctttttattccataatatttcattgcataaattgtctactattatttttctactcatcaattaaaggccatttcaatggcttctatttttcagctatcaacaatacctccagaaatatttctatatatttcggtgggaatattacttttcactaattctatatgaggacaacaagtagtagaattttaaaatcataattatctttgtgtttaactttATTTTTTGTATGTCTGTGGTCTGCAGTATATATGCATGTATATACAAACATTCACTTGTGTGAGAGCTCATGTCTGTGCAGATGCACATAtatgtgtgtacacatgtgtgaggaagtcagaggtccatgcagagcttcctcttccatcggtctccatcttgtacattgaggcagggtctccctcgattgaacccata s rn5.chr9 92410436 1081 + 121549591 ctttcttatatttcccagaacaacatgtcctgaggtggtg---cccgcagttagctggtccctcccacatcaatcatcaatcaagaaaatgtcacatagacatgcctaacaagcaataactatggaggtattcatgttcagttgaagttcctcttttcaaagtacttttgcttgtgtcaagttgacagaaaCAAAAGGGAACAAATTTAAAAAAAAACCCAAACCAATTGGGACACAATGTGTGTTCATTATTCAAATTTCCTCCTTTGCTTATATTCCAGAGGAAAAAAAGTGTAGCCTCTCAACTTTCTCACTCTGTGTAGATTTTTGAGAGTCCACTCTCAGTTTTGCACCTCttggagtaaaatttatttgcaataaaatttatgcatttgaatataaatccaaggactttttgccgagctgtgcacccagtactatagtaagagtttaggatgccgtcctcccccatccctaaaagaatcccttgcagctatgtacagtccattctcatcccccttagtccaagcaaccactaatacatctgtctgcatagatttcacttctgggcattttgtagaaatgaaattatacatcatttagccttctgggtttggcttctttcattaacaaacaa---tttttgagattcatccatgttgtagaatgtcttaacattttgtccctatttattc------atttcattggatagattgttctatgtcacttgtctactcagcaattaaaggtcatttcaatgacttctatcttttggctatcaacaatgccaccataaatattttcatataatttgttgagaatattacttttcactaaacctgtatgaggacaactaatagtggaattcaataatcaaaattagcactatgtttaactttATTTT--GTATGTCTTTGGTCTGCAGTATATACGCA-ATGTGTAAAAACATTCACATGTGTGAGAGCTTACGTGTGTGCAGAT--ACACAtatgtgtgcacacatgtgtgaggaagtcagagcttgatgttgagttttctcttctatcagtctccatcgtgta-atcgaggcagggtctctctcacttgaactcaga i rn5.chr9 I 1450 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3709699 7549 + 6458163 I a score=4174.000000 s mm10.chr1_GL456221_random 172291 54 + 206961 gcttccagttcagctGTTGATGCATTGGGGTTAATTCAAGACA-TTTATCTTATG s rn5.chr9 92411517 54 + 121549591 gcttccagtcagttagTCGATGCGTTGGGGTTAAATCAAGACC-TTTATCTTAAG i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3717248 49 + 6458163 gcttcaattccatttatt------ctgggctctactgaggaccacctattttata i nomLeu2.GL397366 I 7549 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I a score=75769.000000 s mm10.chr1_GL456221_random 172345 302 + 206961 TATGTTTGTTCTTTGAAGTCTTTCTTTCATATATAAAACCTTA-TAGTTTCCACAATCATCT-ATTGTACTGACAACCATTTTCCCATGGTATT-TTCTCCTCTAGGATGTCCACTGAACAGGAGAACACAGAGATG---CATCTCATTGAATGTATGTTAAAGCACTTCAAGACACAGAAAGTGGCCATTTCTAATGCGATAAGAAGTACATTTCCTTTTCTTGAGAGCCTCCGAGACCGTGAATTCATCACTGGTAAAATGTATGAAGTAAGT-AAATTTACTTCATCATAACCTGGTAAACAAGCT s rn5.chr9 92411571 303 + 121549591 TTTGTTAGTTCTTCAAAGTCTTT-TTTCATATATAAAACTTTA-TAGTTTCCACAAGCATCT-ATTGTACTGATAACCATTATACCATGATATTGTTCCCCCCTAGGATGTCCAGTGAACATGAGAATACAGAGACG---TTTCCCTTTGAACTTATATTTCAACACTTCAAGAGACAGAAAGTGGCAATTTCTAATGCAATAAAAAATCCATTTCCTTTTCTTGAGGGCCTCCGAGATCATGAATTAATCACTGCTAAAATGTATGAAGTAAGTGAAATTTACTACATCATAACCTGGTAAACAAGCT i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_182850 291 290 - 1120 TGTGTTGGTTCTTCATAGCCCCCCTTTCGTTTGTAAAATCTTAGCAGTCACCACAAACATCTCACGATGTTGATGAGCATTTTCCC-TGGTGTTCTTTTCCCTCAGAACCGTCACCAAAAAGGAGATCAAGGACAT------------------TTTATTCAAACATTACAAAAAGTTTAAAGTGGAGATTTCAAAGGCAATAATAAAGCCATTTCCATTTCTTGAGGGTCTCCGTGACCGTGAACACATCACCAACGAAATGTATGAAGTAAGTGACATTTCCTACATTATAATCTGGGAAGTAAACC i dipOrd1.scaffold_182850 N 0 C 0 s nomLeu2.GL397366 3717297 305 + 6458163 tatgttggttcttcatagcttatcctttataCATAAAATCTCA-CCACCTCCACAAACATCTCAGAATCTTGACGACCATTTTCACTTGGTGTCCTTTTTCCCTAGGCTGTTCACGGAAGACCAGGTTGTAGATGAGGGACTTGTCTATGATACTGTATTCAAGCACTTCAAAAGACATAAGCTGGAGATTTCAAATGCAATAAAAAAGACATTTCCGTTCCTCGAAGGCCTCCGCGATCGTGAACTCATCACAAATAAAATGTTTGAAGTAAGTAAAGTTTATT---TCACAACCTGGCAGATATGCT i nomLeu2.GL397366 C 0 I 4 e pteVam1.scaffold_9232 59952 36226 + 60856 I a score=1813.000000 s mm10.chr1_GL456221_random 172647 41 + 206961 CCAAATTAAGTTACACTTTGATATCCCAATTCAAACTTCAA----- s rn5.chr9 92411874 38 + 121549591 CCAAATTAAGTTATGATTTAATTACC---TTGGAACCAAAC----- i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_182850 581 42 - 1120 CAAAATGAAGCTATACCTTCATCTCC----TGGAACCAAAGTTCAA i dipOrd1.scaffold_182850 C 0 I 59 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3717602 4 + 6458163 I a score=22871.000000 s mm10.chr1_GL456221_random 172688 411 + 206961 ATCAGATGACGGACACGGTTTTAAGGTTGGACTTAATTTTTA------------------------AAAAAGATTTCGTTTCTTACATGCATGTGTGTGTTTATGTGTTCCTGTGTGtgtgtgtgcatgtgtgcatg----------------------------------tgtgcatgtttacataggagctgatacccacagagccctgaaaagggctccagattccctggaactggagttacaggtagttgtgagccacctgatgtg-ggtgctaggaatggaatccaggtcctctgcaagagctacacatgctctgaaacacttagccatctctccagccccAGGACTAAATTTTGACCAAGAAAGTTCATGGATTTTCATAGCATTTTGTAGAGGTATCAGTTACAATAATAAATTCATCAACTATGAATTAAAATTA-------------AAATCTGGGTTTCCTATAACTGATACT s rn5.chr9 92411912 476 + 121549591 TTTAGATGATTAACAGGTTTTTAAGGTTGGACTTACTTTTTAAACAGAAGGTTGGACTTACTTTTTAAAAAGATTTCATTTCTTACATGCAtgtgtgtgttcatgcatctgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtacacgtgtgtgtgcacgcatgtatgtgtatgctcacataggtgctgatgcccagggagcccagagaagggctccagattccctggacctggagttac----agttgtgagccacctgatgtgtggttcaggggatgaaacacaggtcctctgcaagagctacacgtgctctgaaccaccaatccatccctacagactcAGGACTAAATCTTGAC---AAAAGCTCATGGCGTTTCACAGCACTTTATAGAGGTATCATTTGCAATAATAAATTCATCAATTATGCATCAGAATTATGGCCTCAGATTTAAAACTTGGCTTCCTGTGAGTGATACC i rn5.chr9 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e dipOrd1.scaffold_182850 623 59 - 1120 I e nomLeu2.GL397366 3717602 4 + 6458163 I a score=3699.000000 s mm10.chr1_GL456221_random 173099 40 + 206961 TATCATGAAGATATTTCTGGAAGTGTTCTCTCTAGGGATT s rn5.chr9 92412388 40 + 121549591 TGTCATGAAACTATTTCTGGATGTATTCTTTGCGGGTATT i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3717606 40 + 6458163 TATTTTACAAGTATTTCTGTAAGTGCTCCTGTAAAGTAGA i nomLeu2.GL397366 I 4 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e dipOrd1.scaffold_182850 623 59 - 1120 I a score=51466.000000 s mm10.chr1_GL456221_random 173139 360 + 206961 AAGGGAGATGAGAAGCCAAGGCCTC--AGGAGATGGTACTGCTTCTATCTGAGGGAATGGCGTTCCATGTCAACTTCTGCCATCAGTGAATAT--TGCTGAAG----ATGAGCTAGGTCAGAA-TAGGGGTTCTCCATGGATGAGCAATGTCTCATGCATTTCATACCATGTAATATATGTAATTAAAACTAAATCAATCTAAACTAAAGAAATAAACTAAAAATCAAAGGTGATTTTAATGAACTGTCCAATTATTTTATCAAACTGACTTCATGAGATTTCAGTTAGTA---CATTTTA----GTTTAGTAAATGTTTATTTTAAAAACCTAGCTTTGAGAACAATAAGACGTACAG------AGTGTTTAATTCAGACA s rn5.chr9 92412428 352 + 121549591 GAGGAAGAGGAGAAGCAGAGGCCTCAGAGGAAATGGGCCTGCTTCTCTCTGAGGGAATGGTGTTCCATGTC-GCCTCTGGCATCAGTGTG-----GGCTGAAG----ATGAGGTAGATCAGAA-TGGGGGTTCTCCATGGACGAGCAATGTCTTGTACATTTCCCAATATGTAATATATGCAAGGTAAACTAAA-----CTAAATGGAAGAAATAAACTAAAAATCAAAGGTGATTTTAATTAACTGTTCGATTATTTTTTCAAAGGGGACTCATAAAATTTCATTTAGTA---CATTATG----TTTTAGTAAATGTTTACTTTAAGAATCTAGATTTAAGAA-ATTCAAACCTACGG------AGTGTCTTATTAGGGCA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_182850 682 331 - 1120 AGGGAAGACGGACTGCAGAGAGCCA--CACAGATGGTCCTGCCTGTCCCTCAAGGCAC-GTGTGCTGTGGCCCCCTCCAGAGTCAGGGTG-----AGCAGCAGTGACACAGGCCAGATCAGAAGTGGGGCCACTCCGTAGAGGTGCAAGGTCTTGTACAT---------------------AATGCGCATTAAC-----ATAAAC--------TACGCTACAAATTAAACAGATTCTTAATGAGCTGGTAAATTATTTTACTGAACTGATATAATGAAATCACAATTAACA---CAGCATGTTAATTTTATTTAATGTCAATCTTAAAATCCTGAATCTGAGAACATTAAAACATACAG------GGTATCCTGTCAGGACA i dipOrd1.scaffold_182850 I 59 N 0 s nomLeu2.GL397366 3717646 312 + 6458163 AAAGGAGAGGAGAAGCAGAGGTCAC--CAGAGATGGTCCCACTTCCAGCTGAGGAAATGGGGTTCCATGGCACCCTCTGGAGTTGGGGTGAATGCTACTGGAG------AAACTGGAACAGAAACAGGTGTTTTCCATAAATGTACAATGTTTGGTAGAATTCATAC---------------------ACTATA-----ACA-----------TAAACtaaaatttaaaaataattttaatGAATT---------------------GATTTACTGAAATCATAATTGACAGAGCATTTTA----TTTCAATTAACATCAATTTAAAATACCTAGATCTGAGAACATTAAAACCCACAGGGAATTGGTGTCTAGAGAGGACA i nomLeu2.GL397366 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I a score=511.000000 s mm10.chr1_GL456221_random 173499 13 + 206961 AAAATTTTAAAAA s rn5.chr9 92412780 13 + 121549591 AAATTTACAAAAA i rn5.chr9 C 0 I 12 s nomLeu2.GL397366 3717958 10 + 6458163 -AATTTGGAAA-- i nomLeu2.GL397366 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I a score=156.000000 s mm10.chr1_GL456221_random 173512 32 + 206961 CA-----Ctgtttttattttacaggtgtaagtgtttt s nomLeu2.GL397366 3717968 37 + 6458163 TAGATGCTTGTTATTCTTTCTCCAACACATTTGTTTT i nomLeu2.GL397366 C 0 I 283 e pteVam1.scaffold_9232 59952 36226 + 60856 I e rn5.chr9 92412793 12 + 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 173544 196 + 206961 gtctgcatgtatatctgtgtaccacttgtgcccctggtgcctttggcaatcaaaagagaatgcaccagatcctctggactatagttatacaaatggttatgaaccaccatatgggtactgggaatcgaactcaggacctctggaagagcagccactgctcttaatcactaagtcatctctctagccccTCTAGTGT e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3718005 283 + 6458163 I e rn5.chr9 92412793 12 + 121549591 I a score=7566.000000 s mm10.chr1_GL456221_random 173740 126 + 206961 TTCTTTTGCCTTATGAATATGCCACTCTCCAGTAGGGTTCGAAATTAGAGGGAATGGACCTCTTATTTCCTTCATGACAAATCAGGGTTAACCAGGAGGCCAGAACGAGTCCTGTTAATAAAATAG s rn5.chr9 92412805 125 + 121549591 TTCTTTTGCCTTATGAATATGCCACCCTCTGGTAGGGTTCACAATCAGAGGGGATGGATAACTT-TTTCCTTCATGCTAAATCAGTGTTAAACAGGAGGCCAATACTTGTCCTGTTCACAGAGTAC i rn5.chr9 I 12 I 11 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3718005 283 + 6458163 I a score=0.000000 s mm10.chr1_GL456221_random 173866 190 + 206961 ACTGCCagccgggcatggtggtgcacgcctttaatcccagcactcaggaggcagaggcgggcagatttctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagggctatacagagaaaccttgtctcgaaaaccaaaaAACAAACAaacaacaacaacaacaacaacaaAATAGAT e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3718005 283 + 6458163 I e rn5.chr9 92412930 11 + 121549591 I a score=4114.000000 s mm10.chr1_GL456221_random 174056 70 + 206961 TGCCAAGTCTATTTCAAAAGTAGTCTTGCTATGAGATATATATCAGTTTACCTTCCTTTAAAAAAAAGTg s rn5.chr9 92412941 65 + 121549591 TGCCAAATCTATTCCAAAAGTAGCCTGGCTATGAGATATACATTAGTTTGCCTT-----AAAAAGAAGAA i rn5.chr9 I 11 I 2 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3718005 283 + 6458163 I a score=0.000000 s mm10.chr1_GL456221_random 174126 348 + 206961 ggctggtgagatggctcagcgggtaagagcactgactgttcttccaaaggtcctgagttcaaatcccagcaaccgcactgtggctcacaaccacgcataatgagatctgacaccctcttctggagcgtctgaagacagctacagtatacctatttataataataaataaatctttGGGCCAGATCGAGCAGGGACTGAGCAGGGTTGACTGGAGTGAGTGGGGCCAACCGTAGCGAGcagaagtcctaaattcaattcccaacaaccacatgaatactcacagccacctgtacagctacagtgtgctcacatacataaaataaatacataagtcttttaaaaagaaCA e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3718005 283 + 6458163 I e rn5.chr9 92413006 2 + 121549591 I a score=25714.000000 s mm10.chr1_GL456221_random 174474 466 + 206961 TAtttattttta-ttcttttgtgttcacctattctgcctgcatctctgtgtgcatagcacttgtgtgtctggtgcccttggaggccagaaaggaacactgaatcatcacatggaactggagttacagatgttcgtgagctcttgcgttggtgctgggaactgaacttgggtcctctgccagagtagcaagcactctcaccccaccgagccatctcttcagccccTCTACACATCTAAAAACAATTAAATATATTGTTTATCTACTTATGAGCTGTGTGTGTATCTTTGTATtgtgtgggcatatttgtatgagtcaggtgctgtgcatatggagaagtaagagaccaaatgtggctagttggtttcttcttcagattcagatgatgatctgagtcccagggatggaactcagactaccaggattaatggcaagtgcctccacccactgagAGAT------AGCCCCATAGTTG s rn5.chr9 92413008 450 + 121549591 TAtttatatttaattctttcctgtacaagtatgctccccacacctatgtgtgcatagcacttgtgtgcctggtggccatggtggccagaaaagaacactgaatcattacatggaattagagttatagatgtttgtgagctcctgtgttggtgctgggaactgaatgtgggtcctctgtgatagcaccaagcaaactcaacc-accgagccctctcttcagccccTCCACACATTAAAAAAAAAACTATTAAAT-------CTACGTATGAT---TATGTGTGTGTCTGTATtgtgtgggcatat--gtatgagtcagctgctgtgcacatggggacgtaagtgaccaagtgtggctagctggtttctccttc----------caccgtctgaatgccagggattgaactcagaccatcaggattggtggccagtgcctctccccactgagcgatctcaccagctccATAGTTG i rn5.chr9 I 2 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I e nomLeu2.GL397366 3718005 283 + 6458163 I a score=69441.000000 s mm10.chr1_GL456221_random 174940 547 + 206961 ACCTTTAGCCCATATTTCCCTTTCAAAGTTGGCCCTTCTTACATGTAATATAAATGAGTATG-GTATCCCAAAGTCACCAGTGATTACTTTCAAA-AGACAATATTTACTTGTTTCATGAAGTAGTCATGCAAA-----------TATAAAGCTTCCCCTTAGAAGATATGTTTGGAGGG-GATTGAGGTACCCTAACTATAATTATT-TTTCTAGGGCTCTTCTGTGACATGGAAGCCTGCACTGAAATTTTCTCTATTCAATATTTTTATTTAAGGATTTGCTAGATTCCTGTAGATCGCTGGTCCCTGTGGACAAAGTGATCTACAGAGCCCTGGAGGAACTGGAGAAGAAATTTGACATGACGGTACTGTGCGAATTGTTCAATGAGGTCAACATGGAGAAGTACCCCAATTTGAATCTCATTCGTAGAAGCTTTGAATGTGGT-ATTGGGTTTTATATCGCTCCTTGAGAGCACAGTCCTTTTTGTTGtcaacaaatgtata-ttaagcttttatcatgtgccatatatcatgcagagaaattgaggatataacagtta s rn5.chr9 92413458 548 + 121549591 ACCTTTAACCCATGTTTCCCTTCCAAAGGTGGCCCTTCTTACATGTCATATAAATGAGGATG-GTTGCTGGAGGTCACCAGTGCTTACTTTCAAAGAGACAATGTATACTCATTTCATGAAGTAGTCGTGCAAG-----------TATAACGCTTCCCCTGAGGAGATGTGTTTGTAGGG--ATTGAGGGACACTAACTATAATCCTT-TTTCTAGGGCTCTTCTGTGTCCTGGAAGCCTGCACTGAAATTTTCTCTGTTCAATGTTTTTATTTAAGGATCTTCAAGATTCGTATAGAGCCCTGGTCCCTGTAGACAAAGTGATCTACAGAGCCCTGGATGAACTGGAGAAGACATTCAGCATGAAGGTCCTCTGTGAAGTGTTCAGTAATGTCAACATGGAGAAATATCCAGATTTGCAACTCATCCATCAAAGCTTTGAACATGGTAATTGGGTTTAACATTCTCCTATGAAAGCACAGACCTTTTTGTTGtcaccaaacacata-tgaagcttttaccatgggccaggtattgggcagggttattgaggatatagaagtta i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3718288 559 + 6458163 ACTTTGAGCCCACTGTTATCCTTCAAAGTTGCTCCTTTTTACATCTAATGTAAATGAGGGTGAGGCAATCAGGCTCATCAGTGGGTGTTTTTAAGGAGATGTGATTTACTTCTTTCATTAC-TAGCTATATAAATATGTAAAAATTATAAAACTTTACATGAGAAGATACCTCTGAAGAGAAATTGAAATTCAGTAACCATAAAATTTGTTTTTATGGCTCTTTTGTAACTTGAAAGTCTGTATTTGTATTTTCTCCATTCAATATTTTTA---AAGGATTCTCAAGATTCTTGTAGAAACCTGGTCCCTGTACAAAGAGTGGTGTACAATGTTCTCAGTGAACTGGAGAAGACATTTAACCTGCCAGTTCTGGAAGCACTGTTCAGCGAGATCAACATGCACGAATACCCCGATTTAATTCACGTTTATAAAAGCTTCAACAATGGTAATTAGGTTTATTATCTACCTTTTGATTTCCAGGGCCAATTTTTttaaataagcatatgtttgagctcctaccatgtgtgacactttgtgctggg-cagtgggcatagagtagtta i nomLeu2.GL397366 I 283 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I a score=-1351.000000 s mm10.chr1_GL456221_random 175487 1 + 206961 -a s rn5.chr9 92414006 1 + 121549591 -g i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3718847 1 + 6458163 -a i nomLeu2.GL397366 C 0 C 0 s eriEur1.scaffold_362401 1999 1 + 45069 C- i eriEur1.scaffold_362401 N 0 N 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I a score=4726.000000 s mm10.chr1_GL456221_random 175488 57 + 206961 caagacTACTGTGT-CATGAATCATATGAAAACTTATGACTAATGGCT-------GACACCCTCC s rn5.chr9 92414007 58 + 121549591 caagacTAATATGTAAATGTATCATCTGAAAACTTATGTCTAATGGCT-------ACTACACTCT i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3718848 64 + 6458163 caaaacagacATGT-CATGAGTCTTCTTGAAGCCCATGGTATATGGCTATGGCAAAACAAAcacc i nomLeu2.GL397366 C 0 C 0 e pteVam1.scaffold_9232 59952 36226 + 60856 I a score=67.000000 s mm10.chr1_GL456221_random 175545 1 + 206961 C s rn5.chr9 92414065 1 + 121549591 C i rn5.chr9 C 0 C 0 s nomLeu2.GL397366 3718912 1 + 6458163 t i nomLeu2.GL397366 C 0 C 0 s pteVam1.scaffold_10686 5758 1 + 49512 t i pteVam1.scaffold_10686 T 36226 N 0 a score=-943.000000 s mm10.chr1_GL456221_random 175546 3 + 206961 GAG- s rn5.chr9 92414066 3 + 121549591 CAG- i rn5.chr9 C 0 N 0 s nomLeu2.GL397366 3718913 4 + 6458163 ggag i nomLeu2.GL397366 C 0 C 0 a score=3485.000000 s mm10.chr1_GL456221_random 175549 135 + 206961 CTCTGC--CGCTGGGCATTTAGGCTCTCAGGACAATAGGAGGCATACCATCATCAGGCT-ATGTAGAAGAGGGTAGGATTAGAAGTGCTGATTGTCAGTAGGGTAGCA-CTGTTGTGTCT----CTCAGTGGGCATTCTTACA s nomLeu2.GL397366 3718917 135 + 6458163 atctgcttcactggccacttagactcacaggacaacgcgagccacactggcatcagtttcacttagaa--------gataagaaacacagaacaccaacagggcagcatcagttgtttcttctctttactgggagtccttaca i nomLeu2.GL397366 C 0 N 0 a score=57980.000000 s mm10.chr1_GL456221_random 175685 1095 + 206961 GGTGAGAGTGCTCTTGTCTCCCCAGCTAGGGAGGTGAGGGATGTCTTCTGACTCCCCCCttttttgagacagggtttctctatgcgactttggctatcctggaactcattgtatagaccaggctagcctccagctcc---agatctgcctgcctctgccttctgagtgctgggactaaaggcgtaagccac-atgctcagGTGATCCACTTAAAACTCAAAACACACTTCTCATTATTCCAGTTTTTCATCTTGAACTTCATGTCATTTAT---------------------------------------------GattataataataattattattGACAGAATCTTACTCTGTAACCCAACTTAGCTTGTTACTATATAGCTGAGCCTAGCCTTAAATTCGTGCCACTCCT---GTCTCAGCTTCCTGTGACTGCCTGGCTGACCAACAGCCTTTCTGAAGGTTGATTCATTGCCACCAAGACAAAGTGAGCAGCAAGCTCCTGATGTTTGATCTGCAGCTGTGCAGGAGCCTAGCATT-TCTTGCTTCCAA------------------TTTTTTAAAAAAATGATCTTGGACTTCTTTATTTAAAGTCTAAAAGTAGATCAACTCTCTTCGTCACATACATAGTGAAGGCAAAGTTATCAGGGTTATATATACGTGTATATATACATCTCTCTTTCtctctctttctatccatctatctatctatcatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatGCTTACCAGGGCTTTTCACAGTCTTTCAGTAGTTGGTTTGAAAGCAATCAGTAGATCAATAATT-----ATAAACCTGGTAACAGTTGTGAAGTCAGTGTAGAAGACTAAACCCACACAATTGTTTGGCTTAGTTCCTAGGTTTTTTTTTTTTCTTCCCCCTCATAGTTGACACTTTGGTTTAAGTCAAATGTGCTAGCTCCTTTATCTCCTGCCATGGCTGGCTCAGAAAAAGGCTGTGCTCATTCTAGCCAATGAGGCTGGACGGGTTTAGTTTCCAAGAGCTCTGGAGCTCAGTCCCTGCTTCCCAACccctctct--cttccctccctccct-ccctccctccctctctccctccctcccttcctcTTT s rn5.chr9 92285576 1117 + 121549591 GGTGAGAGCTCTCTTGTCTCCCCAGCTAGGAGACTC-----CCCCCCTTTTGttttgttttttttgaaacagggtttctctgtgtggctctggctatcctggaactcat-atgtagaacaggctagcctccaactcccagagacccgcctgcctctgccttctgagtgctgggactaaaggtgtgagccaccgtgatcagGCAATCGACTCAAAACTCAAGACACACTTCTCATTATTCCAGTTTTTCATCTTCATCTTCATATTATTTactaccaccaccaccaccaccgccaccgccaccgccgccgccgccaccaccaccaccaccactactacTgacagaattttactctgtagcccagttcagcctgttaccctctatctgagcctagctttgaacttgtgccactccttctgtctcagcttcctgcggctgCCTGGCTGACTAACCGTCTTTTTGAAGGTTGATTCACTGCCACCAAGACAAAGTGAGCAACAAGCCCCTGATGTTTGATCTGTGGCGGTGCAAGAGCCTGGCTTTCTCTTGTTTCCAAAAGaatttattttttatttttttt------atGATTTTGGACTTCCTTGTTT-AACTCTAAAAATGGATCAAGTCTCTTAGTCACATACATACTGAAGGTAAAGTTATCAGGGCTATATACACATAtctctctccat-----tttctctctctc---------------------------tctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctctGCTTATAAGGGATTTTAACAGTCTCGT-GTTGTTGGTTTTAAAGCAGTCAGTAAATCAATAATCATGAAATGAACCCGGTAACAGCAGTGAGGTCGATGT---AGACTAAACTCTCACAGTTGTTTGGCTTAGTTCCTAG-------TTTTCTTTTCCCCCTCATAGCTGACACTTCGGTTTTAGTCAAATGTGGTAGCTTCCTT-CCTCCTGCCCTGGCTGCCTAAGAAAAAGACTGTGCCCATTCTAGCCAGTGAGGCTGGAGGGGCTTAGTTTTCAAGAGCTCTGGAGCTCAGTCCCTGTTctccctctcttctctccctctcttccctctctgttctccttcgctcccctcctccctcccctcctctct i rn5.chr9 N 0 I 31 a score=0.000000 s mm10.chr1_GL456221_random 176780 152 + 206961 ATCTTCTTTTCTTTATAAGATTGCATTATTTGCTGAtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtatgCCAAACTCAtgttcacacatgtgtcactgtatccatgtggaggtcagaggataatttccaacacttggttctctccta e rn5.chr9 92286693 31 + 121549591 I a score=122000.000000 s mm10.chr1_GL456221_random 176932 2115 + 206961 tcatgtggcactcaggtcttcaggcttggcagccagtgcctttacctgccgaTCAGCCTATCTTctct---ctcctttctcct-ccctccctccctccctgctttctttcttTTTAAAGATGTTTTCATAC----TATTTTGATCATATTCTTTCCCATTTCCCAACTCCTTCCCGGCCTCCCTACTTACCCAACTTATTGTTCTTTTTCTATCTTAACCCCTCAACATACCTACCCCACAAAACCC------CCATGGAATCTGATTTGTATCAGCCAATTACACTGTTAGTTCCAAAGCTCTTCTCCCAGCCCCACACGGCAGTGTTGGTGGGAA----------ATAGAAAGACTTCAGCCAGGTAAACAGAAGGATTTTGATTGGTACATAATCCTAAAGGCTGGTTTCTGTTTATCAGAAAAGCAAGTTTCCTAAAGTGGGTTTCTGTTTGCCAGGAAGCATCCCTAATCCTCCTTCCCTCAAAGCTCAGCTACCTTAGGTCAGGGCACCGAGTTCTCAGTCAGTCTGGACAGCCTGCATCCACTCAGATCCCCACCCTCCTGACAGCCATGTAAAATCTGCTTGCTTTTCTCTCATTTGCTCTTCTTTCTGCCTACTCCCACCCACCACCTCCCCTGAGGA--GACCTTGGCAGTTTGATCCCCACCCCCACAC-------AAGCATTATAGTTTGGT-GTCTCTTTGTGCCATAGCTTATACtgttaatcccacagaatgagactaaaatgactaccaccatttttt-agccaaattcgatgcaagcgttattAAATATTGACTAGGAAGAAGGATAGTGGCCAGGTCCATACTCAGGATTCCCACAGAATGGCCAAGAATTACATTAGTTAGGTGCTTATAAAGGCACAGCCCACAAGGGTCCATACTTTCTGCCTTCATCCAGTAGGGGGCAGGCATATGTTCCGACATATTTCCTGCCTATGTGTGATCAAGCACAGCCTGTGCAGTTTGTGCAACCAACCTTGTTTACAGAAGTGAAAACATGCGGCTTGTTACCTCACACGAACAATGGCTCCCAGCATTCCAGGGAGTTATCTGTCCCCAGGCAAGTGGGGCTAACAGGTTAGAGGCATTTCTGTTTTATAGATCTTTTAACCACAGTAATGTAAACTTAAAACATAACGTTTGCCCGCCCAGTATGTGTGAAGGTTCACATGTGTGTATACAGGCTTGCATGTGTGTGTGTGCATGCCAAATGTTAGCTGTGCTTGTTAAACATCTGGAGACAGCTCACAGagggcctctgagtgagcagaatgggcttttaattgctgagccatctcttcagccccAGAAGTTGTTTTTGTCTCTCTTCGTTTCAGTttcttctgagacagagtcttcttattggcttacacttgcttcgagcggatgattctgctgcttcagcttcttgagatgctcaga-------tatgtgccactgtgcctagctGGAGAAAATACTCCCTTCCCCTTGTTTTAGATTTAtttatttttatttcatgtgtatgagtgttttgtctgcatatatgtatgtgcttcttgaatgtgcagtactggagaggac--------agggctgaatgccctggaactagaataacaga-tgt-----gctgtcatgtaggcattggaaatcaaacctgaatcctctagaacagcagccagtgttcttatcaatggagacatctctccagccccCTTAAGAATGTTTCTTAAGGTCTTAATTCCATCTtctctctctctctcaacctctctctctctctctctctctctctctgtctctctctctctctctctctccctccctccttccttccctctcttcttctcttcctctctcccttactgCCTAAAGCTAGTTCCTCAGTGGTGGCAAGATGCTGACCAATAGTGTTGAGGACAGTCTTTTCCAGACCTAGAGGGATGGCTGTCCTCATCCAGCAAGTCCTCTGATATGACCACCTTGGTCATGTGCTTGCTTGTTTTACTGAATTTGGGATCAAACCCAGTCATTATGAAAGCTAA------TTCTTAGAGTCAGGTCCCTCCCCTCTCCAGCCTCTCCTTCCTTCTTCCTTTTTCC----------TTGTGTATGTGTATGTGTGTGttgagacaggattttctttgtgtaatcctgactgt s rn5.chr9 92286724 2040 + 121549591 tcACatggcattcaggtcatcaaggttggcagcaagtacccttacctaTCTCCCTATTTATGTTCTCTTTCCTcctttctccttccctccctccctccctgcctTCTTTCTTTTTAAACatgttttcatacaatatattttgatcatgttctttcccatttcccaactcct-ccctgcctccctacccactcaacttattgttctttttctatcttaaCCCCTCAACATCCCCACCCCAGAAAAACAAAAAAACCATGGAGTCTGATTTGTATCAGCCAACTGCACTGACAGTTCCAAAGTTCTTCCCTCACCCCCGCATGGCAATGCTGGTGACAATTTGTCCTAAACAGAAAGACATCGGCCAGGGAAACAGAAAGGTT---------------------------GTTTCTCTGTA-------AACAGGTTTCCTAAAGCAGGTTTCTGTTTGCCAGGAAGCATCCTTAATCCTTCTTCCTACAAACGTCAACCACCTCAGGTCGGGGCACCTAGCTCCCAGTCAGTCTGGAGGGGTTGGATCCACTCAGACCCCCACCCTGCTGACAGCCATGTAAAATCTGCTTGCTTTTCTGTCATTTGCTCTTCTTTCTGCCTACTCCCACCCTTCACCTACCCTGCAGTTTGAGCTCCAATAAATCATCCCTCCCCCCATGCCCCATCAGAGCATTGTAGTTTGGTAGTTTCTTTGTGCCAAAGCTTTTACTGCTAACCTGACAGGATGTGACTAAGATGACGACCACGATTTTTTTAGCCACATTCCATGCAAGCTTTATTA----TTGGCCAGGAAGATGGAGAGTGGCCAGG------------GTTCCCACAGAATGGCCAAGAATTACATTAGCTAGGTGCTTATAAAGGCAGAGCCCACAAGGGTACACACTTTCTGCCTTTAGCCAATAGGGGGCAAGCATACGTTCTGACATACTTCCTGCCTTCGTGGGATCAACCACATCCTGTGCAGTTGGGGCAACCAACCTTGTTTCCAGAAGTGAAAACATGTGGCTTGCTGTCTTACACGAACAACAGCTCCCAGCATTCCAGGAAGTCACCTGTCCTTGGGCAAGTGGGGTTGACAGGTTAGAGGCATTTCTGTTTTATAGATCTTTTAACCATGATAATGTAAACTTAAAACATAACTTTAGCTCTCCCAGTATGCATGAAGGTTCACATGTG------------TGCATGTGTGTGTATGTGTGCCAAATGTTAGCTGTTCTTGCTAACCATCTGGAGACAGCTCACAGAgggcttctgcaggagcagaaccggcttttaattgctgagccatctttccagccccAGAAGTTGTTTTTGTTTCTCTTTGTTTCAGTttcttttgaggcagagtcttgttactggcttaggcttgcttcaggctgatgattctgctgcttcagtttcttgagatgctcagattacaggtatgtgccattgtgcccagctGGAGAAAATCCTTCTTTCCTCTCATTTTAGATTTTtttctgtttattttatgtgtatgagtgttttgtctgcatatatgtatgtgcaccatgaatgtgcagtacctgagaagaccagaagagggagctgaataccctggaactagaatagcatactgttgctaactgtcatggaggcattagaaatcaaatgtgagtcccctagaacag----cagtgttcttaatcatggagccatctctccagccccCTCCAGAAAGCTTCTCAAGGTCTTAATCCCATCTTTTTTC-----------------------CCCTCTCTCTCCCTCTG----------------------------------------------------TTCCTCTCCCCCTCACCACCTAAAGCTAGTTCTTCTGTGTTGTCAAGATGCTGACCAATAGTGTTGAGGACAGCCTTTTCCAGACCTAGAACCATGTCTCTCCTCATCCAGCAAGTCCTCTGATTGGACCACCTTGATCATGTACTTGCTTGTTTTGCTCAACTTGGGATCAAACCCAGTCTTTATGAAAGCGAAGCAAATTCCCTACCATAGGGTCATTGCCCTCTTC-----CCTTTCCCAGCCTCCTTTTCTttttcctcttcgtgtgtatgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt i rn5.chr9 I 31 I 268 a score=0.000000 s mm10.chr1_GL456221_random 179047 86 + 206961 cctggaactctctctctctctgtagaccaccaggctggcttttgcctcccgagtactgggattaaaggcctgtgccaccgccaccg e rn5.chr9 92288764 268 + 121549591 I a score=74985.000000 s mm10.chr1_GL456221_random 179133 1264 + 206961 gctCTTCCTCTTTCttatttgagtcagaatcacaccgtacagcttagatcaggctgaccttgaatttatgatcctcttgtatgagcaccagtgctTACTTACCAGGCCAATGTTGCCTGATATGGCCAGTGAGAAATGAATCTTGACTAGGCACAGGTTGGGGGAGTCACAGCAAGACCGAGGCTGTGACAAGTTTATTACAAGTAATCAGACTCTTTATACTGTTATCAGAAACAAAATATAATGGCAGCTGAGAGGCAGAATACAAAGGTAGTTGCTAAGAAACAATAACATTTTCAAACTATACAGGGCACAAGAGATTAGTGTCTGAGACCAATTGCCCTGCCAATTGGTCTATATGCTTCATTGACT-----------------tcttagtttgggttgtgttgctatgaagagacaccatgactatggcaagtc------------------attgggggctggctcacagtttcagaggctcagtccattttcatcatgtcaggaaacagcaatgtgcaggcagacatggtgctggagatagagctgagagttctatatcttaatctgc--------aggagagtctttgtgccacactgggcatagctagagtatgggagacctcaaagaccacccccccaagagtgacatacttcctccaacgaggccacacatactccaaccaggccacacctcctagtaatgtcacttcctatgggccaagcattcaaacctattagtcataccacttgatcaaaccagcacaATAGAGAA--ACCGAGGTGGCCTGAATACATCACTGTTTGAGGAAATGCCCCTGTTTCAGGAACTGAAAGCCACACAGTGCCCCAGGAGGTACAGACTTCAACCTGAACAACTTATGACGCTTGTACCTCAAGTGGACTAGACCAGGCCAGTTCCATGATTCCTTACATTATTGCTCAGACTCCTAGGATTATCG-ATTACATGACTGTAGCTGGTTAATCATGTG--TGTTTTAACATCATTTATAGATTGGCTTAGGTCTAGTGCATTCTGGTCCCCCAAACAAACAACATTTCTTTACTGTATCCTTTACTGGGGATGGGGATGGGAAAATTATAGCAAGATTCCTGATGGGGTA-----GGATGCAAAGGATGCTGAGACTCTTATTTGCTTATCTgagagagagagagagagagagagagaaagagagagagagagaaagagagagagagagagagagCAAGTACCACAGGATGTTATCTCACTTGTCCTCAGTGCTCATTGACAAATGGGGACTCTAAGGGGAAATCCttttttttt s rn5.chr9 92289032 1258 + 121549591 ACTCTTCCCCTTTCttatttgagtcagaatcccattgtacagcttaggtcaggctgaccttgaatttaagatccttttgtataagcaccagtgctTATTTACCAGGTCAAGGTTGCCCGATATGGCCAATGAGAAATAAATTTTGACCAGGCACAGGTTGGAGGAGTTACAGCAAGAATGAGGCTCTGACACGTTTATTGCAAGTAATCAGACTCTTTATACCCTTATCAGGAACAAAATATAATGCCAGCAGAGAGGACGAATACCATGATAGTTGCTAAGATACAATGGCATTTGCAAGCTATACAGAGCACACAGAATTAGGGTCTGAGACCAATTGTCCTGTCATTCGGTC--TATGCTTCATTGACTTCTAAGGAACACAAAtgtcttagtttgggttgtattgctgtaaagagataccatgaccatgtcaacgcttataaaagaaaacatctaagagggtctggcttacagtttcagaggttctggccattatcatcatggtgggaaacagcagtgtgcaggcagacctggtgctggaggtagagctgagagttctacatcttgatatgcaggtggcaaggagagtctctgtgctacactgggcatagctagagcatgggagatctctg-------ccccccaacagtgacacacttcctccaacaaggccacacccactcaaaccaggccacacctcctaacagtgtcactttctatgggccaagcattcaaacctattagtcatacc---tattcaaaccaTGATGACGGAGAAACACAGAGGTGGCCTGAATGCATCACTGCGTGAGGGAATGCCCCCGTTTCAGGAACTGAAAGGCACACGGTGCCCCGGGAGCCACAGAGTCCAACCCGAACAACCTATGACACATGCACCTCTTGCCAACTAGACCAGGCTAACTCCATGATTCCTTGCACTCTTGCTCAGTCTCCTAGGATTATAGAAACACATCACTGGAGCTGGTTAATCATGTATTTTTTTTTACATAATTTATAGATTGGCTTAGGTCTAGTTCATTCTGGTCCCCCAAACAAATAATGTCTCCATACCATATCCTTTACTGGAAAT-GGGATGGGAAAATTATAGCAAGACCCCTGTGTGTTCACTGGTGGATGCGAAGGATGCTGAGACAGTCACATGCTTATCT----------------------------------------------AAAAGCTAGCAAGCAGGCAAACACCACAGGAAGTTATGTCACCTGCCTTCGGTGTTCATTGTCAAATGGGGACTTGGGGGAGGGTGGATCTTTTTCT i rn5.chr9 I 268 C 0 a score=0.000000 s mm10.chr1_GL456221_random 180397 183 + 206961 tttttcttttttttttttttttttttttttttttgagacagggtttctctgtgtagccctggctgtcctggaactcactttgtagaccaggctggcctcaaactcagaaatccacctgcctctgccccccaagtgctgggattaaaggcgtgcgccaccaccgcccggcCAGAAATTCTTTTC e rn5.chr9 92290290 0 + 121549591 C a score=36648.000000 s mm10.chr1_GL456221_random 180580 648 + 206961 TTTAAAAAATACTTATCATCTGTATTTTACATTTTCTTTTTGGACAACAGCCTGTTACTTGAACAACTTCAAAGAGAAAGGCTATGGCTCTGAGCGAAAGCTGGTAACAAATGCTTGTGGGTTTCAAGTAGAGGTGGTGGCAAACGGGAAGTACTGGCCAAGCTTTACAGAAGCTCAGAACTGCCTCTCTTGTGCCCCTGTTACATCATCTCTGTTATATTTCCCCTGTACTAGTGTGGGGAAGTCATTTCTGCTTTCTCCAGAGATACCTGTCTTAGTCCTCTTTATAGACCACAGTGTGTGTCGGGAGCCTGGAAAGGAGACTGAGACCATGCGCATCATCAGAGGGACACGAATGCAG-----AAGTGAAGGAGCGGCTTGGTCCTCCACTTCTTTGGGCAGAAGGTGCTGAGTGTTCTTTGCTTTCTCAGATGCCTCTGTGTGACACTGGCTGCAGACCCGTGGAAGTAGCTCCTGAGTTTGATGGCTCAGGGAACTTGGTTCCAGCTGTGAGGCACTGGCCATCAGGGGCTCTTCCTAGGACTTGCTACCATTTCCAATACCTCTTCCTAGAAAACACACTCACTCACTGGTGGTTGGATC---AGAAAGGATCTCTGTTGGCAAGGTAAGGTGTCTCCTGTCTGACCTGT s rn5.chr9 92290290 592 + 121549591 TTAAAAAAATGCTTATTATCTATATTTTACATT---GTTTTGGACAACA---TGTTACTTGAACAACTTCAGAGAGAAAGGCCATGCCTCTGAGGGAAAGCTGCTAACAAATGCTGGTGGGTTTCTAGCAGAGGTGTTGGCAAGAGAGAAGTACTGGCCATGTTTTACAGAAGC-CAGAACTGCCTTTCTCTTGCCCCTGTTACAACATCTCCATTGTAGTTCCCT--------TGTGGGGAAGTCATTTCAGCCTTCCCCA-------------------------------------------GGGAGCCTGGAAAGGACACAGAGGCCGTGTACATCATCAGAGGGACAGGAATGCAGAAGTTAAGTGAAGGAGGGGCTCGGTCTGCCACTTCCTTGGACAGAAGGTGAGGAGTGTTCTGTGCGTTCTTAGATGCCTCTGCGTGACATTGGCTGCAGACCTGTGGAAG-GTCTCCTGGGTCTGATGGTTCAGGGAACTTGGATCCAACTGTGAGGCCCTGGCCACTGGGAGTTCTTCCTAGGA-TTCCTGCCGTTTCTAATACCTCTTCCCGGAAAACA----CACTTACTGGTGGCTGGATCGGTGGAAAGGATCTCTGTCCGTAAGGTAAGGTGTCTCTTGACTGACCCGG i rn5.chr9 C 0 C 0 a score=300.000000 s mm10.chr1_GL456221_random 181228 1 + 206961 C s rn5.chr9 92290882 1 + 121549591 C i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_9369 3775 1 + 35067 C i tarSyr1.scaffold_9369 N 0 I 9266 a score=578.000000 s mm10.chr1_GL456221_random 181229 10 + 206961 -CTGGATGTCT s rn5.chr9 92290883 11 + 121549591 ACTGGACGTGT i rn5.chr9 C 0 C 0 e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=906.000000 s mm10.chr1_GL456221_random 181239 10 + 206961 TAGTCTGATT s rn5.chr9 92290894 10 + 121549591 CATTTTGATT i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 25945533 10 + 30916457 GAGACTGGTT i myoLuc2.GL429770 N 0 I 24 e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=-341.000000 s mm10.chr1_GL456221_random 181249 6 + 206961 TCT----------GAG s rn5.chr9 92290904 16 + 121549591 TCTACTGGAAGCGGTG i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 25945543 24 + 30916457 I e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=1503.000000 s mm10.chr1_GL456221_random 181255 10 + 206961 TCACAGCTCT s rn5.chr9 92290920 10 + 121549591 TCTCAGCTCT i rn5.chr9 C 0 C 0 s tupBel1.scaffold_111017.1-172466 34907 10 + 172466 TCACAAACCT i tupBel1.scaffold_111017.1-172466 N 0 N 0 e myoLuc2.GL429770 25945543 24 + 30916457 I e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=251.000000 s mm10.chr1_GL456221_random 181265 4 + 206961 AAGA s rn5.chr9 92290930 4 + 121549591 GAGA i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 25945543 24 + 30916457 I e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=-412.000000 s mm10.chr1_GL456221_random 181269 9 + 206961 --TGTTCAGAG s rn5.chr9 92290934 9 + 121549591 --TTTTCAGAG i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 25945567 9 + 30916457 TGATTTTAT-- i myoLuc2.GL429770 I 24 I 7896 e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=1723.000000 s mm10.chr1_GL456221_random 181278 23 + 206961 CTGACCAGACCCTTTTGCAGTCA s rn5.chr9 92290943 23 + 121549591 CTGACCAGACCCTTCTAGAGTCA i rn5.chr9 C 0 I 2440 e myoLuc2.GL429770 25945576 7896 + 30916457 I e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=0.000000 s mm10.chr1_GL456221_random 181301 1333 + 206961 TCTCGCTGAGATGAACTGACATTTTACTGTCATTTTGAAAGTCATACTTACCAAAAGGATTGGAATACTCTGAGCTGAACAGTTAAGGCACACTGGTGTCAGGGGGAAATCCATGTTGGGGAGGAAATAAGGCAAAAGACAAAGGATCATTTTATGTTTCCTGTTAACGTATCCACCACCCCCAAGTGGAAATCCCACCAGAGCAAAGACCTTGCCAGCCTCGTTAGATACTGTATTTGTAGCATCCAAAATAGTCAAAAGTgccgggcactggtagtatacatttttaatcccagcacttggcagaggcagagacatgcaggtctctgagttcgaggccagcctggtctaccacgtgaggtccaggacagccagggctacacagaaaaaccctgtcttgaaaaCTGAACCAAGCTAAATCAAAATAAAAAAAAAATAGTCAAAAGTATTCATATACTTGATAAACAGAAGGCTAGCTAGCTGGATAAATAAATCCTTATCGTTTCCTAGGGTCACATTCTTGGGATTTCTTTAAAATTTTTAAGAAAGTAATTCTTATATTTATCTATCTGTCTGTGCTATAGTGTTTGCAAATCAGTCCTTTCCTTTTACCGAGTGGGCCTggctgtcaggcatagcagccagtgcctccacctactgagccatcCTACATCCCTTTTTTTGTTGTTTCAttttatttatttgagacaggggttcaggtagcccacgttggccttgaacttatcgtgcagctgaggatgaccttgaacccccaatcatcagcctgctgagattacagacttgtcctaccctgtctgtttttatatgctgccagttattgaccccacaattttgcacacggtaggcaagcactgtaccacccaagctCGTGCTGCCTTCCCAGCAGGAATTCTCTTCTGACTCTCTTAGAAGATTAGGTCCCTCTGCTGAGGTTTCGAAGCACTTGAGTTGAGAGGCACCCACTACATTGATGCTTTCCCTCTTCTCTCCAACCCCTTCCCTGGAAGACTGTATAGTTGTGGAAATTGCaattaattaattaattaattaTTTttctatttgctttgagatagaacctcactatgtagcccatgctggcctggaactctcaaggtgaaaatcaagctagcctagaactcacctgcatctggccactcttcccttcccctacctcccagggctgaagctacaggtgtgcgctgtcatgcatggctTGAGTTACAGGTGTGCACTGTCATACATGGCTGAGGTTGCAGGTGTGCTGTCATGCATGGCTTGAGTTACAGGTGTGCACTGTCATGCATGGCTGAGG e myoLuc2.GL429770 25945576 7896 + 30916457 I e tarSyr1.scaffold_9369 3776 9266 + 35067 I e rn5.chr9 92290966 2440 + 121549591 I a score=34657.000000 s mm10.chr1_GL456221_random 182634 631 + 206961 TGGGGACTAGCTGTCTGCTCAGAGGTCAGAGAATTGGGGAATCCTCTCAGCTCAATGTCCAGGGCCTATGAGAAGAAGAAGGCAGTGGCTGCTGTCTGTG-AAGGAAGGACCTGTGTCATCTA---------------------------------TGCATCTCTCTCTTTATCCATTCCTTAGGTGATGGGCACCTAAGGTTGAGGGTGCTGGTTGCTCTGTCCCAGGACAGGTGCTCTGAGTCACATCCCTAGGATGCTCCTTAGAGAAAATCCATACTCCTCTCCATCCAATGTCTTAACTTAGCTGCTTCAAGTCATGGTGCAATAAACACAGGGGCTCAGGCATCTCTGCCATATGCTGCTGACATAGGGGCCATTTGCAGCTATATTTGCTTGttttcttttctttttctttttcttttctttttttttttttttttttttttgaggcagaattttatgtaacccaggttggcttccaacttactgtatagctgaggacaaccttgaacataagaacttcctgcctcttatctcctaggtgctggggttacaattacatgtcaaatgtgttttatatagcacagggatggagcccaggattttgtgcctacccggcagactcagctctactaactgaactacacactcagtcTTTCAGT s rn5.chr9 92293406 596 + 121549591 TGGGAACTAGCT-TCTGTTCAGAGGTCCAAGGAGCGGGAAATCCTCTCAGCTCAATGCCCAGGGCCTGTGAGGAGAACAAGGCAGTGGCTGCCAACTGTGGAAGGAAGGACCTGTGTCATCTACTCCAGTTCCCTGGCATACCCTTTGAATCCTGCTGCACAGATCTCTTTATCTATGCCTTACTTGAATGGCACCTA-GGTTGAGGGTGCTATTTGCTCTGTACCAGGACAGAGGCTCTGAGTCACATCCCTAGGATGCTCCTT-------------------CTCCAGTCAGTGCCTTAACTTAGCCATCTCAAATCACGGATCAGTAAACACAGAGACACAGGCATCTCAGCAGTA--ATGCTGACTTAGGGGTCACTTGAAGATATATTTA-----------------------------------------TTTACttttttttgaggcagaattttatgtaacccagattggcttccaacttactgtatggctgaggacaaccttgagcataagatcttcctgcct-tcatttcctaggcgctggggttacaattacatgtcgagagggttttatatagcacagggatggagcccaggacttggtgcttacccagcagactcagctctaccaactaagctacaCA----GTCTTTCAGt i rn5.chr9 I 2440 I 169 e myoLuc2.GL429770 25945576 7896 + 30916457 I e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=0.000000 s mm10.chr1_GL456221_random 183265 326 + 206961 tcttcttcttttttaaaaaatatttatttatttattttatgtatatgagtacactgtagctgttcatatggttgtggaccttcatgtggttgttgggaattgaatttaggtcctctgCTCACTCTAGTTGGCCCCACTTGCTCCGGTTCAGCCCaaagatttatttattactatatgtaagtacactgtagctgtcttcagaagagggcaccagatctcattacaggtggttgtgagccaccatgtgcttgctggggtttgaactcaggaccttcagaagagcagtcagtgctcttacccactgagccatctcaccagccccCCTT e myoLuc2.GL429770 25945576 7896 + 30916457 I e tarSyr1.scaffold_9369 3776 9266 + 35067 I e rn5.chr9 92294002 169 + 121549591 I a score=12377.000000 s mm10.chr1_GL456221_random 183591 220 + 206961 TCAGTTCTTTATTATAGTCTGGACAGACAGACATCTGTGGCCAGATGTTCAGTGGG------------------------------------TTTTTTTGCAGAAGAGTGACTGGTTCTGATTTAGTCAGGGAATTTGTAGCTATAA-GAATTCGTTCA--TCTTTTAGCTCCAAAGGCTTATTTCAAAACTGAAGCTTTGGGCTGGAAGACAGCAGGTGTTCCTTATTTTAAAATTTCAGAAAAAGGACAAAGCCCTA s rn5.chr9 92294171 247 + 121549591 TCCGTTCTTTAT-ATAGTCTAGACAGACAGACATCTCTGGCCAGATGTTCTGTGGGACCtttttttttttttttttttttttttttttttttttttttGGTATAACAGTGGCTGCTTCTGATTTTGTCAGGGAATTTGTAGCCAAAAAGAATTTACTCACGTCTTTTAGCTCCAAAGGCTTATTTCAAAACTGAAGCTGTGGGCTGGAAGGCAGCAGGTGTCTTTT-----------TCAGGAAAAGGACAAGGCCCTA i rn5.chr9 I 169 C 0 e myoLuc2.GL429770 25945576 7896 + 30916457 I e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=-791.000000 s mm10.chr1_GL456221_random 183811 2 + 206961 -AG s rn5.chr9 92294418 2 + 121549591 -GG i rn5.chr9 C 0 C 0 s pteVam1.scaffold_409 349505 2 + 380355 TA- i pteVam1.scaffold_409 N 0 N 0 e myoLuc2.GL429770 25945576 7896 + 30916457 I e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=257.000000 s mm10.chr1_GL456221_random 183813 5 + 206961 ACCTG s rn5.chr9 92294420 5 + 121549591 AGCTG i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 25945576 7896 + 30916457 I e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=38.000000 s mm10.chr1_GL456221_random 183818 1 + 206961 C s rn5.chr9 92294425 1 + 121549591 C i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 25953472 1 + 30916457 T i myoLuc2.GL429770 I 7896 I 33307 e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=-478.000000 s mm10.chr1_GL456221_random 183819 6 + 206961 T-CTAAG--- s rn5.chr9 92294426 10 + 121549591 CACTAAGCAG i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 25953473 33307 + 30916457 I e tarSyr1.scaffold_9369 3776 9266 + 35067 I a score=38.000000 s mm10.chr1_GL456221_random 183825 1 + 206961 G s rn5.chr9 92294436 1 + 121549591 G i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_9369 13042 1 + 35067 A i tarSyr1.scaffold_9369 I 9266 I 14 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=37.000000 s mm10.chr1_GL456221_random 183826 4 + 206961 TTAA s rn5.chr9 92294437 4 + 121549591 CGAA i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 25953473 33307 + 30916457 I e tarSyr1.scaffold_9369 13043 14 + 35067 I a score=-736.000000 s mm10.chr1_GL456221_random 183830 7 + 206961 AAGATGA-- s rn5.chr9 92294441 7 + 121549591 TCGATGA-- i rn5.chr9 C 0 C 0 s papHam1.scaffold21725 15507 7 - 38946 --CATGTAT i papHam1.scaffold21725 N 0 I 4 e myoLuc2.GL429770 25953473 33307 + 30916457 I e tarSyr1.scaffold_9369 13043 14 + 35067 I a score=291.000000 s mm10.chr1_GL456221_random 183837 3 + 206961 AGC s rn5.chr9 92294448 3 + 121549591 AGC i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 25953473 33307 + 30916457 I e tarSyr1.scaffold_9369 13043 14 + 35067 I e papHam1.scaffold21725 15514 4 - 38946 I a score=273.000000 s mm10.chr1_GL456221_random 183840 1 + 206961 T s rn5.chr9 92294451 1 + 121549591 T i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_9369 13057 1 + 35067 T i tarSyr1.scaffold_9369 I 14 C 0 e myoLuc2.GL429770 25953473 33307 + 30916457 I e papHam1.scaffold21725 15514 4 - 38946 I a score=207.000000 s mm10.chr1_GL456221_random 183841 1 + 206961 G s rn5.chr9 92294452 1 + 121549591 G i rn5.chr9 C 0 C 0 s papHam1.scaffold21725 15518 1 - 38946 G i papHam1.scaffold21725 I 4 N 0 s tarSyr1.scaffold_9369 13058 1 + 35067 A i tarSyr1.scaffold_9369 C 0 C 0 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=527.000000 s mm10.chr1_GL456221_random 183842 5 + 206961 ATTAT s rn5.chr9 92294453 5 + 121549591 ATTAT i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_9369 13059 5 + 35067 TGTAT i tarSyr1.scaffold_9369 C 0 N 0 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=10699.000000 s mm10.chr1_GL456221_random 183847 222 + 206961 TTATTTGGGCCTGGTTGCCAGAGCTCTTGATATGCAAATGTACCTCGGAGAAGGTATGCAAATCAAGGCGGGG----TCCCCCATCTCCCCCCCCCCCCTCATAGGAAGAGCAATAAAGCCTTCCTTCCTTTCTGCTGCAGATTTCGAACTCCAATCGCCTGAAGTGTGCTAAGT-AGTTGCTCGGGCAGTGGGGTCCACACAG-CTGTTCCCATGTTCCCATGTTGC s rn5.chr9 92294458 222 + 121549591 TT----GGGCCTGGTTGCCAGAGCTCTTGGTGTGCAAATGCACTTCAGAGAAGGCATGCAAATCAAGGCAGGGGAAATGGCTGATCT--TCCCAGAGTCTCACAGTAAGAGCAATAAAGACTTCCTTCCTTCCTTCTGCAAATTCCCAGCTCCAATCTCATAAAGTGTGCTCAGTCACTTGCTCTGGTGGCGGCATCCACATGGCCTGTTCCCACTTTGCTGGGCTGC i rn5.chr9 C 0 I 153 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=0.000000 s mm10.chr1_GL456221_random 184069 6 + 206961 TTGGAA e myoLuc2.GL429770 25953473 33307 + 30916457 I e rn5.chr9 92294680 153 + 121549591 I a score=5296.000000 s mm10.chr1_GL456221_random 184075 90 + 206961 CCGCATTGTTTTCCCTGGTTTGCCCACCCTACTACCCTGCATCACTCGCGACAT----CTTGAGAGGCTCCATTCAAGCCCCCCTTCAAGTCCA s rn5.chr9 92294833 94 + 121549591 CTGCATTGTTCTTCCTGCCTTGCCCACCCTCCTGCCCTGCTTCACTCTAGACATAACCCCTGAGAGGCTTGATTCAAACTTTCCTTCAAGCCCA i rn5.chr9 I 153 C 0 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=300.000000 s mm10.chr1_GL456221_random 184165 1 + 206961 G s rn5.chr9 92294927 1 + 121549591 G i rn5.chr9 C 0 C 0 s micMur1.scaffold_139057 143 1 + 1102 g i micMur1.scaffold_139057 N 0 I 46 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=3013.000000 s mm10.chr1_GL456221_random 184166 46 + 206961 AAGTGTTCTCTGACTGC--------AGCCAATCAGGGCAGCTTGCTTTGATTTC s rn5.chr9 92294928 54 + 121549591 AACCGTTCTCTGACTGCCCGCAGCCAGCCAATCAGAGCAGTTTGCTTTGGTTTC i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 25953473 33307 + 30916457 I e micMur1.scaffold_139057 144 46 + 1102 I a score=-614.000000 s mm10.chr1_GL456221_random 184212 7 + 206961 ----CCATGCT-------- s rn5.chr9 92294982 7 + 121549591 ----CCACGCT-------- i rn5.chr9 C 0 C 0 s micMur1.scaffold_139057 190 19 + 1102 TGAACAACCCTCTCGTAGC i micMur1.scaffold_139057 I 46 N 0 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=52328.000000 s mm10.chr1_GL456221_random 184219 754 + 206961 GCACCTGATTATCTTTCTGATTGAGTAAATAAATAAAGCTACACACGGTGTCTTTGGTACCTCATTATTTGATTAAACTGAAATCTGCATCAGCCATTGAACAATAAGTTTCTGTTGGCCCAGTGACTGTTTTACCATCTGTCCCCTGCACTGTGCAGGATTAGGCATTGT-TTGTGTCTGTGCTCAGTAAAGGCCGGTTGGGAACAATGACAAAACAGTTCGTCCTGTTGATTCATGCGCTAAACGTATCAGACAAGTGAAGAAACCTGCCACCACTTGGTCTCACCAA---CAATTTCCCAGAAGCTATTTTGGATTAGGGGTGGGGAGATGGGCAGCTCAGTTCTGACAGCAGCTGCAACTGCCTTCATTTGGGCAGGGCGTGGAAGAACCGTTCTTTAGAATTTCATTCTATGGAGTGTACAGTGACTGGGCTTGGAGTCTTGGAACACACTTGACTAGAGCCCTGATCATGACTGACTGCTTGGCTCACAGGGAATGGAGCAGGTGTGTGCCCATTATGGGATACCCCAGGCAGGGACAGAGAGGTCTGCTGAGTAGGGATGGAGGAAATTTGGGGGACTGTCTGGGATTCTAGGTAAAATGAAGGGTGGCAAGTAGGATCAAATACAGAGAATGGGG---TATCCCCAGCTATGGTGAGCCCCGGTGCGTGtgccgtgctgggatcaaacctaggactttgtatgtactaggtgagcactctgttaaccgaggtccacctgcagccccAGGCCTC s rn5.chr9 92294989 738 + 121549591 GCCCCTGACTTTCTTACTGATTGAGTAAATAAATAAAGCTGCACACGGTGTCTTCGGTGCCTCATTATTTGATTAAGCTGGAATCAGCACCAGTCTTTGAACAAGAAGTTTCAGTTGGCCCGGTGACTGTTTTGCCATCTGTCCCCTGCACCATTGAGGGTTAGGCATTGTCTTGCGTCTGTGCTCACTCAAGGCTGGCTGGGAACAGCGACAGAACAGTTCGTCGTGTTGATTCATGCACTAAATGTATCAGACAAGTGAAGAAACCTGCCACCACTTGGTCTCACCAACAGCAGTTTCCCAGAAGCTAGTTTGGATCAGGGGTGGGGAGATGGGCAGCTCAACCTTGACGGCAGCTGCAACTCCATCC-----------------AAGAACCATTCTTGAGAATCTCATTCTATGGAGTGTACAGTGACTGGGCTTGGAGTCTTGGAACACACTTGGCTAGCGCCCTGATCATGGCTGACTGCCTGGCTCAT-----ATGGAGCAGGTGTGTGCCCAACATGGGATACCCCAGGCAGGGACGGGAAGGCCTGCTGAGTA-GGATGGAGGCATCCCGGAGGGCTGGCTGGGATTCTAGGCAAAACGAAGGGTGGCAAGTAGGATCAAATACAGAGAATGTAGCTCTTTAGCTGGCGATGGCGAGCcccggtgcatgtgcggtgctgggatcaaacctagggctttgtacatgctaggtgagcgctctgctaaccaagctccagtcacagccccGGGCCTC i rn5.chr9 C 0 I 7339 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=0.000000 s mm10.chr1_GL456221_random 184973 5962 + 206961 TATCTCACAGGAGGACTGATTATTGGCTTTCTGAAGTCAACTTCAAATATAAAAGCACTTAGTTTACCAGCTGAGATCTGCAGTTATACTGGCTACCAGTCACAGTTAGACACCTTCTGAGAAAAACTGACGGTAAAAAAAGATTGCACTGTGGACtctgagccccattttttaatggggttatttgattttctggagtccaccttcttgagttctttatatatattggatattagtcccctatccgatttgggataggtaaagatcctttcccaatctgttggtggcctttttgtcttattgacggtgtcttttgctttgcagaagctttgcaattttatgaggtcccatttatcgattcttgatcttacagcacaagccattgctgttctattcaggaatttttcccctgtacccatatcttcgaggcttttccctactttctcctctataagtttcagtgtctctggttttatgtggagttcctgaatccacttagatttgaccttagtataaggagatagaaatggatcaattcgcattcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatgctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtgaccataggtgtgtggattcatctctgggtcttcaattctgttccattggtctacttgtctgtcactataccagtaccatgcagttttgatcacaattgctctgtagtacagttttaggtccggcatggtgattccaccagatgttcttttatccttgagaagagtttttgctatcctcggttttttgttattccagatgaatctgccgattgccctttctaattcgttgaagaattgagttggaattttgatggggattgcattgaatctgtagattgcttttggcaagatggccatttttacaatgttgatcctgccaatccatgagcatgggagatctttccatcttctgagatcctctttaatttctttctttagagacttgaagttcttatcatacagatctttcacttccttagttagagtcacaccaaggtattttatattatttgtgactattgagaagggtattgtttccctaatttctttctcagcctgtttatcctttgtgtacagaaaggccattgacttgtttgagttaattttatatccagctactttattgaagctgtttatcaggcttaggagttctctggtggaatttttagggtcacttatatatactatcatatcatctgcaaaaagtgatattttgactttttcctttccaatttgtatccccttgatctccttttgttgtctaattgctctggctaggacttcaagtacaatgttgaataggtagggcgagagtggacagccttgtctagtccctgattttagtgggattgcttccagcttctcaccatttactttgatgttggctattggtttgctgtagattgcttttatcatgtttaggtatgggccttgaattcctgatctttccaagacttttatcatgaatggatgttggattttgtcaaatgctttctcagcatctaacgagacgatcatgtggtttttgtctttgagtttgtttatatactggattacattgatggatttccgtatattgaaccatccctgcatccctgggatgaaacctacttggtcaggatggatgattgttttgatgtgttcttggattcggttagcaagaactttattgaggatttttgcatcgatattcataagggaaattggtctgaagtactctatctttgttgggtctttttgtggtttaggtatcagagtaattgtggcttcatagaatgagttgggtagagtaccttccgtttctattttgtggaatagtttgtgaagaactggaattgggtcttctttgaaggtatgatagaactctgcactaaacctgtctggtcctgggcttttattggctgggagactattaatgactgcttctatttctttaggggttataggactgttgagatctttaacccgatcttgatttagctttggtacccggtatctgtctagaaacttgtccatttcatccaggttttccagttttgttgagtatagccttttgtagaaggatctgatggtgttttggatttcttcaggatctgttgttatgtctcccttttcatttctgattttgttaattaggatgctttccctgtgccctctagtgagtctggctaagggtttatctatcttgttgattttctcaaagaaccagctccttgattggttgattctttgaatagttcttcttgtttccacttggttgatttcacccctgagtttgattatttcctgccttctactcctcttgggtgaatttgcttccttttcttctagaccttttaggtgtgttgtcaagctgctaatgtgtgctctctctagtttctttttggaggcactcagagctatgagttttccttttaggaatgctttcattgtgtcccataggtttgggaatgttgtggcttcattttcattaaactccaaaaagtccttaatttctttctttattccttccttgaccaaggtatcattgagaagagtgttgttcagtttccatgtgaatgttggctttctattatttattttgttattgaagatcagccttagtccatggtgatctgataggatgcatgggacaatttcaatatttttgtgtatgttgaggcttggtttgtgaccaattatgtggtcaattttagagaaggtaccatgaggtgctgagaagaaggtatatccttttgttttaggataaaatgttctgtagatatttgttaagtccatttgtttcatcacttctgttagtttcactgtgttcctgtttagtttctgtttccatgatctgtccattggtgaaagtggtgtgttgaagtctctcactattattgtgtgaggtgcaatgtgggctttgagatttactaaagtttctttaatgaatttggctgcccttgtatttggagcatagatattcagaattgagagtttttcttggagaattttacctttgatgagtatgaagtgcccctccttgtcttttttgatgactttgggttggaagtcaatcttatcagatattaggatggctactccagcttgtttcttcataccatttgcttggaaaattgttttccagcctttcattctgaggtagtgtctttttctctgagatgagtttcctgtaagcagcaaaatgttgggtcttgtttgtatagccagtttgttagtctatgtctttttattggggagttgagaccattgatattaagagatattaaggaaaagtaattgttgcttcctgttatttttgttgttaaagttggcattctgttcttgtggttgtcttcttttagttttgttgagggattatcttcttgttttttctagggtgtggttcccgtccttgtattggtttttttctgttattatcctttgaagggctggattcgtggagagataatgggtgaatttagttttgtcatggaatactttggtttctccatctatggtaattgagagtttggctgggtatagtagcctaggctggcatttgtgttctcttagtgtctgtataacatctgtccaggctcttctggctttcatagtctctggtgaaaaatctggtgtaattctgataggcttgcctttatatgttacttgacctttttcacttactgcttttagtattctatctttatttagtgcatttgatgttctgattattatgtgtcgggaggaatttgttttctggtccagtctatttggagttctgtaggcttcttgtatgttcatgggcatctctttctttatatttgggaagttttcttcaataattttgttgaagatgtttgctggtcctttgagttgaaaatcttcattctcatccactcctattatccgtaggtttggtcttctcattgtgtcctggatttcctggatgttttgagttaggatctttttgcattttccattttctttgattgttgtgccgatgttctctatggaatcttctgcacctgagattctctcttccatctcttgtattctgttgctgatgctggcatctatggttccagatttctttcctagggtttctatcttcagcgttgcctcactttgggttttatttattgtttctacttccctttttaggactagtatggttttgttcattttcatcacctgtttggatttgttttcctgtttatctataagggcttctacctgtttgttttgttttcctgtttttctttaaggacttgtaactctttagcagtgttctcctgtatttctttaagtgagttattaaattccttctttatgtcctctaccatcatcatgagatatgcttttaaatccaggtctaccttatcaggtgtgttagggtgccctggactgggcgaagtgggcgttctgggttctgatgatggtgagtggtcctggtttctgttagtaggattcttacgtttacctttcgccatctggcaatttctggagttagttgttatagttgtctttgtttagggattgttcctctggtgattttgttaccctctagcagcagacatgggagactagctctctcctctgagtttcagtggtcagcacagtctctgcaggcaagctctcctctttcagagaaggtgcacagttatctggtgtttggacctcctcctggccgaagatgaaggcccaaaacaggatctttcccagaagctgtgttgctttggccaggaaggtggccggttgtctggaggtgaagatggcgccgcctcagaagctctgtggctcttgcctgttccagaaactgctggcctctgtattccacaccctcacccgtgcagcctgccctcctcggagtcccggagccaaggtggctcccgctggagcctgaggcagaaacctctcgggctgggcggaccgctgtgctctcaccaggaaggtggccggttgtctctctctcagagttcttatctcttcccagaagttcttccttctactttctgcctttgctataggccacaagctttttTTCCtttttctttttttaaaaagatttatttattttatgtatatgagtacactgacactgtcttcagacacaccagaagagggcatcagatcccattacaggtagttgggagtcaccatttggttgctggaaattgaattcaggacttctggaagagtagtcagtgctgttaaacactggtccacctctccaTATCTTgtcggtcagctttttaataacacaatcagaaggtgagagagggagtatttacaaaacactgagacaggagatgcttaacaatttcaaagtcccacctgtaactggatctctgccagttcagaaatcagcattattataatacagagacaacctgtatatctctgggtcaacctggtctacaaagtgagttctagagcagccagggctttttacacagaaaaatcctgtcttgaaaagctaaaTcaataaaaaataaaataaacaaataaacaaacaaacaaataggtcagtcttgaaaccatatacacacaaacaataaagactcagcaaactgtatttaaatgtatttgaacatatacattcatttatgtatacatGGACATATACATACGTACATGTATGTGAAtgtattagtcagtactatattgctatgaggagacactatgaccctggcaactcttacaaaagaaaacatttaattggggcttgtttacagtttcaaaAAataggttttctccttagatggaataagccaattcaaaccgaattaagagttgaaaagggcaggtttaccttggcaagttcattggccccaaggaaggaggccaaggaaattgccatgcaaacaggaagacagagaaggggaaaagagaaaggaggg e myoLuc2.GL429770 25953473 33307 + 30916457 I e rn5.chr9 92295727 7339 + 121549591 I a score=48618.000000 s mm10.chr1_GL456221_random 190935 826 + 206961 agggagagggggaggggggaagaatagggagagGTGTGAAATCCTTCATACTCCAAATTCAAGCTCGGATAAGATACAGAGG-AAGGAGA-GGGAGGAAGTGGTGGTTAAAGTCACTTGTAACTAACC--------GGGTTCCCTGTAAAACCTACCCTTCCCACATGATGTGCTGTTAATGAGACAGAAAGCGTGGGAAGTTGGACAAATAGTCAGAGAAGTTGGACT-GTAAATATCCCTAAGAAATTAAGTCACTCAAGAAAGAAAATGCAACTTACCTAAAAATTCCAGACCTCATATGCATGTTCCATTTACCCTAACTGCAGCCATGTCACTATTGTGTGGGACTTTGCTGACTCTGTTTAGCTTGGGAACAGACACTGGCTGAAGTCAGACCAAACTTGGAAACTCTTTAAAAG---CAAGAGGGAAAAAGTTGACATTTTTATCCTTGTAAGAGAATACTGAGTGAATTCTGGCCATTTAGAAGTTTCAGAAATTCAAACCACAGTTAGAAACCTGAATTATTCTTTTCCTCTGAGAAGGTCAAAGATTATGGCTGGGAATGTCTGCTGGGTATCTAAGTAATGACATGTACTTACACTGGTGGAGAGAAA---------------------------------------------------TTATTTAAAAAAttatttttattatttagtgtgtga--ttttgctgcatgca--tatatgcatcatgtgtgtgcagtaacccaggagaccaggagaggacattggatcccataggactgcagttatatatg-------gttgtactgtagatgctgggaattgaacctgggttctctgtaagaatagccagtgctcttaatcactgaggtatctctccTGTACCACCAGCGT s rn5.chr9 92303066 896 + 121549591 agagagagagagagagagagagag-agagagagagagggaATCCTTTACACTCCAAATTTAAGTTTGGGTAAGATGCAGAAGTAAGGAGAAGGGAGGAAGCGGTGGTTAAAGTCACTTGCAATTAACCAAGTTCCCGAGTTCCCTGTACC-TTTGCCCTTCCCACATGATGTGGTGTTAATGAGACAGAAAGGGTAGGAGGTTGGGCAAATATTCAGAGAAGTTGGCTTTGCAAATAGCCCCAAGAAATTAAGTCACTGAAGGAAAAAAATGCGATTTATCTAAAAATTCCA-ACCTTGTATGCTCAGTCTGTTAACCCCAGTTGTAGCCACATCACCACTGCATGGGAAGTGTTGACCTCTGTTTAGCGTGTGAGCAGACGCTGACTAAAGTCAGACCAAACTTGGAAGCTCTCTAAAAGTGACAGGGGGGAAAAAGTCGACATTTTTATCCTTGTGAGAAAATATTGAATGAACTCAGGCCATTTAGAAGTTTCAGAAAATCAAACCACACTTAGAAACTTGCATTATTCTTTTCCTCTGAGAAGATCA---ACTATGGTTGGGAATGCCAGCCTGGCAGCCAAGCAATGGCATAAACTTACACTGGGGGAGAGAAAATTCCAAATCTTCCATTGATGGAGCTGGAGGGGAAGGAACCAGAATATTCTTTATTAAAAAAAttatttttgttgttttgtgtgtgggttttgcctgcatgcatgtatgtgtatcttgtgtgtgcagtaacccaggggaccaggagagggcgttagatccctttggactggagttacagatggttgtaagttgtactgtggattctgtagattgaacttgggccctctgtaagaatagccagtgctcttaaccactgaggtatctctcctgcaccACCAGAGT i rn5.chr9 I 7339 I 125 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=26591.000000 s mm10.chr1_GL456221_random 191761 402 + 206961 ATTTCTAAGGGATAAGAGGACCATGTGATGACGGGTCTGGCCTTGAGGACATTGGAAAAGACTGAGCCATAAGGCTTCCTGCCTCCAAGTGAGGAGCTCTCTGATAAAAGGTTGGAGGATACTATAGAGGGCGCTGCTGAAGGAGAGGGTGGAGGTGGAGTAAGAACCATCTACCAGAGGCAAGCATCCAGAGAGGTGAACTCTGATTGAGTTCTGTAAGAAAGAATGAGTAAGCACCAATTTTCCTACCCAACACACAAACGTGTAGCTCagactttattttttcaaaaccttatttttaaaatgggttcttaaatactttaactcccccttctagccctccacccaccagaggtagtggaaaagaaaggttatgagaatacaggggagttggacatgttt s rn5.chr9 92304087 389 + 121549591 ATTCTTAAGGAATAGGAGGACCAGGTGATAA---ATCTGGCCTTGAGGACATTGGAAAAGACTGTGTCATAAGGCTTCCTGCTTCAAAGTAAGGGGGTCTCAGATAAAAGGTTGGAGGATACTATAG-GGGTACAGTTGAAGGAGAGGCTGGAGACGG----AGAAACATCTGCCAGAGACAAGGATCCAAAGAGGTGAACTCTGATTGAGTTCTACAAGAGAGATTGAGTAATCACCAATTTTCCTACCCAACACACAAGTGtgtagcttagat----ttttttcagaaccttacttttaatatgggctctgaaatgctttaac-ctcccttctagccctccacccactggcggcagtggaaaagaaaggttatgaggatacaggggaagtgaacctgttt i rn5.chr9 I 125 I 119 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=9758.000000 s mm10.chr1_GL456221_random 192163 148 + 206961 agaaatagttctttggagcaaatcccatctgtgttgtcaggaactcagcagttcagttcacaggaatcagcagaggctgctccatccacttgaaaacacttaacgaatatactagcagtccagctcagtggtgtcaggatagcaaaca s rn5.chr9 92304595 146 + 121549591 agaaattgttctttggaataaatctcatttgcaacgtcaggaaatcagcagttcagttcatagg--tcagcagcagcagctcaatccatttgaaaacacttcacgaatataccagcagttcagttcagtgatgttggggtagcaaaca i rn5.chr9 I 119 I 239 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=0.000000 s mm10.chr1_GL456221_random 192311 21 + 206961 caagtcctcacacagatgaga e myoLuc2.GL429770 25953473 33307 + 30916457 I e rn5.chr9 92304741 239 + 121549591 I a score=14319.000000 s mm10.chr1_GL456221_random 192332 372 + 206961 ctcaccatgtgagtctgt-ttagcaaaactccatgtgagtctgtatcagatgacatcactatgcccatcagcctgagtccgaggaagtgacaagaagca---gaagttttttggtgcatttctgtcattggagtcacaacaaacagagctcagtaacacactgtcagatgagccaatacatgggtgtcatttagtaaagtgtccttcatcaaacatccattcacgtgcttgctttagcaaaacatcctttcacccatgtctgtttcaggaaaacatcctgtgatataactgactttcctgaaaaaccgtaagtctcca-----cAAACCCTGGCCTTTGCTATGGACAGTCTTTTCTCACCTTCCAGCCCTGGAGAACTCA s rn5.chr9 92304980 299 + 121549591 ctcaccacatgagtctgtcttagcaaaactccacatgagtttgtatcagctgacattactcttccaatcagcacaaatccgaggaagcagcaagaaccaccagaaatttttgggtgcatttctgtttatgaagtcacaa----------------------tgtcgggtgagccagtacatgggtgttgtt-agtaaagaatccttcatcaaacatccattcTTTT-----------------------------------------------------------TAACTGTCTTTCCTAAGAAACCATACATCTCCAGGTCACAAACACTGGCCTTTGTTACAGACAGTCTCGTCCTACCTCCTAACCCTAGAGGACTCA i rn5.chr9 I 239 T 1013 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=6963.000000 s mm10.chr1_GL456221_random 192704 86 + 206961 CCAGAGAGGTGAACTCTGACTGAGTTCTGTAAGAAAGAATGAGTAAGCACCAATTTTCCTACCCAACACACAAATGtgtagcttag s rn5.chr9 92304266 86 + 121549591 CCAAAGAGGTGAACTCTGATTGAGTTCTACAAGAGAGATTGAGTAATCACCAATTTTCCTACCCAACACACAAGTGtgtagcttag i rn5.chr9 T 1013 I 2353 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=0.000000 s mm10.chr1_GL456221_random 192790 577 + 206961 aatttttttcaaaaccttacttttaaaatgggttcttaaatactttaactccctcttctagccctccacccaccagaggtagtggaaaagaaaggctatgaggatacaggggaggtggcatggaggggtgctgctttctggcttgctcctcttagctttgctcagtcttttctcgtagaacccaaaaccaccagaccagggatggcaccacctacaatgggctgggcttttcagtttcaatgactaattaagaaaataccctacagacttacctgcagcctgatcttatggaggcattttctcaaatgaggttttctcctctctgaagattcgagcttgtgtcaagttgacataaaaatagccagtataTGGGGACTTGCTAGGAGGGATaaataatgacaaggaggcttctataatagtttaaagctcaggcctttgacttggacagtctcctggctactctaaacttaacctaactagccagtgacccaccatatggccagctctatacgtttcTCTGCTCCCTCAATGTCCTTCTTGAATCTCCCACCTCTGCTTGAATCTCCCCTTAAATCAT e myoLuc2.GL429770 25953473 33307 + 30916457 I e rn5.chr9 92304352 2353 + 121549591 I a score=167150.000000 s mm10.chr1_GL456221_random 193367 2700 + 206961 TCTCTGCCTGCAAGTTCTGCCCTCCATTTTCTTCTCTGACTACTGGCTGTCAGATCTTTATTGCGACTAATCAGCATCGAGACAA--TCTCTGGTACATTTCTAGATTGCCTCTAGGCATAGAGAGCTGTCTGAACTTCAGCTATCTGAGCAGGTGTGGAAGGACAAGTATTTACAAATATAAGGCTGGTGATGGGCCATAGAAATGACAAAACCAATATCCTGCCAGCATTTAGTCCTTTGCCC-TACAGAATTAACAATTGAAAACACAGAGACACACCATTACACAATGTGAAAAAAATATTATCCCAATAAGCTAGGATAGGTATCAAGATGCTATGATGAAACCAACCTAATATAACGAGAAATAAACCTGCTAGCAAACTTAATACCATCTGCAATCTTAATAATGTAATTATCCTAACATAGCTGACATAGCCATGTAACATGCTCATGAGCTGACAA-----CACAGATAGACTTGCCTTGCATGCTTAGGGCCCTAGATTTGACTTCAAGCACTACCAAAGCAAGCAAGCAAACAAACAAACAACTACTAGTTCAAGAC---TTTTTTTGTAGTAAGAAATCAAAAGAAAGTCATAAATCCTAAGTT-CTGACTGTTATAAAAAGGACATATTTTGGGGAGTGTGGGATATTATCCTATCTCTCATATTTACTAAACTGAGATTCTTCTTTTTTttttttaatttattcattttacaaactaatatc-gccctttctgtcctcccaggaccacatcacacaagtcctccctcccccatttcattctaccttctccttatcttttgagaagaggaa-----------ggtgtaa------ccccccccacccatatcaagccactgagtgactaggtggatcctctcccactgaggccagacaaggcattcatttgggggcacgggatccacaggcaggcaggcaacagactcaaggacagcctttgttccag-ttttgggggacctgtatgaagatcaagctgttcatctactatatatgtgcaggggccaaagtccagcctgtgcttgctctttggttggtggttcagtctctgggagtcgctgaaggtacaggttagttgactctgtttgtcttcctgtggagtccctgtattctttggatccctcaatccttctcttaaatcttccataagcctccctgagctccatctcatgtttgggtatgagtctctacatctttttccattgttggctatgtggagcctctcagaggacagttatactagcttcctgtctgcaagcataacaaagtatcattaatagtgtgagggactggttcttgctcatgggatgggtctcatgttgggccagttattgttggacattcctgcagtctctgctccatctttgtccctgcatattttgtaggcaggacacattttgagtcgaaggcttttgggtgggtggctatccttatctctccagtgggagtcctgcctggctataggaagtgaccacttcaggatccatatccctcactgctagaattctcaactagagttgcatccattagaccctctggggttgccccctatcccaggtctctggcatgttctaaagattggccactcccatttctgatct-ccttctctctcccctgctctcctcatgtatgatctccacctaccagccctctccccttcccatccccttttccaaccagttccctccttccattaatgtccaatatctattttgtttccccttctgagaaagattcaaccatccttccttggaccctccttgtta-tttgacttctttgggtctgttggttatagatagcatggttatcctgtactctatggctaacatccacttataagtgagtacatattacgcatgtccttttgtttctgggttacctcacttaggatgatattttaaagttctatccatttgcatgagaaattcttgatattcttg-tttttaatgggtgagtagtagtccg-cgtgtaaatgagccacattttctgtctccattctttagttgaggga-atctgggttgtttccagtttctgtttattatgaataaaactgc--taagcatagttgagcaaatgtccttgtgggatggtggcacatcttctgggtacatgctcaggtgtggtatagctgggtcttgaggtagaaatattcccaattttctgagcaactgccaagttgacatccagagtggttgtacaagaatgtcctcc-cccagcagtgtaggagta-tttctcttgctccccaaccttgtcagcatgtgttgttctttgagtttttgatcttagccattctgataggtgtaaggtggaatctcagagttgttttgatttgcatttccctgatgactaaggatgttgaacatttctttaggtgtttttcagccattcaatattcctttgttgaaaactctctatttagctctgtacctcattt-tttaattgggttatttggattattggtatctaacttcttgagttctgctaaggatcaacctcagcttggagagggttctgaggaaggagagtgttcaccaccaaccaaaaaaatgactaaaagtcaaatcatgggtacaagctgat---tagccttgtaatctgctcaagatggctccctaaacagctctctgtagatagctcttggatctgtagtatgctcaagatagctttctgctcaagacag--ctttctgcatgagacagtttcct s rn5.chr9 92306705 2680 + 121549591 TCTCTGcctgcaagttgtgccctccattttcttctccatctattgactgttgggtctttattacaaccaatcagcctcgagagaaaaTCTCTGGTGCAATTCTAGATTGCCTCTAGGCATAGATGGCTGTCTGAACTTTGAGTATCTGAGAAGATGTGGAAGGACAAGTATTTACACATAGAAGGCTGGTGTTCGGCCATAGAAATGACAATACAAATATCCTGCCAACATTTAATCCTCTGCCCATACAGAATTAACAATGGAAAATACAGAGTCACACCTTTATACAATGTGAGGAAAACATTATCCTAACAAGCCAGGAGA-GTATTAAGATGCTATAATAAAACTA-------ATAATGAAAAAGAAACCTGCCAGCAAGCTTAATATCACCTGCAATCTTAATAATGTTGTAATTCTAATATAACCGACATACCCAT-TAACATACTCATGGGATGAGAACAGGTCACTGATAGACTTGCCTTGCATGCATAGGGCCATAGATTTAACTTCAAGCACTACAA----AAACAAGCAAACAAACAGAACCTTAATAGTTCAGGACTTTTTTTTTTGTAGTAAGAAAACAAAAGAAAGTCATAAATCATAAGTTCCTGATGATTAGAAAAAGGATATATTTTGGGGAGTGTAGGATAT--TCCTGAATCTCATGTTTACTAAACAGAGTTGTTTTTTTTtttagtttagtttattgactttacaaaccagtatcaactcttcctctcttctcaggaccccatcacataagtcct---taccccatcccattctatcttctcc---tcttttgaggagaggaagacctcctctgggtataagtcccctctcccccacacatatcgagtcactgggggactaggtgcattctctcccactgagtccagacaaggcatctgtttaggggcactgggtccacaggcaaccaggcaacaggcttaaggacagcctttgctccagtttttgggggatctctatgaagatcatgcttttcatctactacatatgtgcaggggcctaagttcagcctgtgctcactctttggttgatggttcagtccgtgggagcccccaacagtccaggtcagttgactctggtggtcttcctgcagagtttctatctcctttggggccctcagtccttctcttagttcttccataagattcctcaagctctatccaatgtttggatgtgggtctctacatctctttccattggttgctgtgtggagtctctcagagcacagttatgctagcttcttgcctgtaagcataacagagtatcattaatagtatcaaggattagtgcttgcccatgggatgggtctcacgttgggccagtcattggtggccactccctcagtctctgctccatctgtgtccttgcacatcctgtaggcggggcacattttgggtcgaaggttttgtggacagttgctgtctttatccctccactgggagtcctgtttggcttttgaaagtgtccacttcaggatccatattccatgctgctaggagtctcagctagagtcaccctcatcagactctctagggcttccccctatcccaggtctctggcatgtcctaaaaattgcctacttctaccgctgatctcccttctttctcccttgctctccctacatatgatcctcccctacctcccctttccccttcccatacccttttccagtcagttccctccttctagtgacctccaatatctattttgtttcccattctgagaaagattcaatcatccttccttgtgctgtccttgttattttggcttctttggggctgtcgact----acaacatggttatcctgtactctatggctaatatccacttataagtgagtacagattatgcatgtttttttgggtctgggttacctca--------------ttctagttctatccatttgcctgtgaaattcatgatgtccttgttttttaatggctgagtagtattccattgtgtaaacgaaccacatttttggtatccattcttcagttgaggggcacctaggttgtttccagtttctggctactatgaacaaagctgttgtgaacatagctgagcaggtgtccctgt--gatggttgtgcatcttttgggtaaaagttcaggtgtggcatagctgggtc--------------ttcccaattttctgagtaactgccaagttgacttccagagtggttgtacaagtttgcactccacccagcagtggaggagtattttcctttgctccacaaccttaccaacatgtgttgtcctttgagtttttgatattagccattctgatgggtgtgagatggaatttcagagttgttttgatttgcagttccctgatgagtaaggatgttgaacttttctttagatg-ctttcagcc-------attgttttgttgagaattctctgtgtaactctgcaccccgtttctttaattgggttatttggattgttagtgtctaacttcttgagttctgccaaggaccagactcagcttggaaaggtttctgagaaag--aggtcctcagcagc-accaaaagaatgactaaaagtcaaatcatcgatacaagctgatagatagccttgtagtccactcaagatggttatctagacagccctctgtagacagctcttggctctgtagtctgcttgagatagctctctgcttgagattgttctctctgcccaagacagctgctt i rn5.chr9 I 2353 I 54 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=0.000000 s mm10.chr1_GL456221_random 196067 29 + 206961 ctgcctcagacagctctcttttgctctct e myoLuc2.GL429770 25953473 33307 + 30916457 I e rn5.chr9 92309385 54 + 121549591 I a score=34844.000000 s mm10.chr1_GL456221_random 196096 623 + 206961 tgcaggaaaaagattgtaaaagacctgtatttgctctccaagcagttctctctgggtagctgctagaa------aaaaattctaaaagaactctgttttctctccagacagctcatccaggttgtttagctcttgcagaccaaagcccagtctttcatttgcatatcaattcagtcattttcttgaggttcttttttggttatcccacgagtcagcattttatgactgtagcaacttgattctaagaaaagaacagcaaattcttaaaaaacaaaataaa-----------------------------------------acaaaacatggcaaatgaattcagatatctgcttg---ctataagtaaagacaataagctagctgggtgggatccccaccactcctgggcttcaactagctctgtcccaggataaccttgaattcagcaatctgcctgagt----agtgcaaacaataaacttagctg-gagggatcttgccatgaaatcaccactctctaaatcttgttatttccttccttaatatctttctgacaaggtggctcacactgcagcagcctctgttttttaggtccatgaagcccccttcatgtaattcatactgcatccttatattttgcatagttgagaatata-------ttgaactcatgttgccaaaCT s rn5.chr9 92309439 667 + 121549591 tgctaggaaaag-ttctaaaagagctatatttcctctccaagcaattctctttgggtagctgccagaaaaaaacaaaaactctaaaagaactctggt-----------cagctcatccagattacttagctcttgtagatcaaagctgagtcttttatttacatatcaattcagctatttacttgaggtttccttttgtttatcccacgaatcaacattttatgaccttagccacttgattcttagaaaaggacagcaaatatatatatatatatatatatatatatatatatgtgtgtgtgtgtatatatattatttttttttaaacatggcaaatgaattcagagatctgcctggttctataagcacagacaataagataactgggtgggatctccaccatgcctgggcctcaactagctctat-tcaggctgaccttgaactcaggaatctgctgcctttgtaagcacaaacaataaattgagctgagtgggatcttc---tgcaatcaccactctctaaatctctttatttccttccttaatatctttctgacaagatggctcatactgtagctgcctctgttttttaggcccatgaagcccc--tcatataattcatattgcacccttatactttgcatagttgagaaagtatatatttttgaactcttgttgttagagt i rn5.chr9 I 54 I 6583 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=0.000000 s mm10.chr1_GL456221_random 196719 1146 + 206961 CAgtctatgagacagttttattcatatccttcacctgtttgactatattttcttgtatttctttatgtttatttgcttcctcattaatgcttttgcttgcttgaatgtattttcatgtatttccttaaggaatttattcatttcttctttaaaggctcttattagctttattagattgaatttaaaatcctcttcttgtgcttcagtttcattaggatatcaagggtttgttgtagaaggatagctgcgcACAACTCACCTCTGTAGGCTGTCCCAGATGGATCAATTGGGATAGTGGGCAACTCTTACTGGAATGGGATTGGTTGGGCAGGGTTCCAAGTTTTGGGGTTCTTGAAGGTTTCCACGAGGAAGTAGGATTCTCTTGGTTTCCCACAAGACTCCTCTGGACCAAAGAGTGAGTCCAGAGCTAGACAATGTAGCTCAGGGGACCATGTGCCACCCCCTGAGATTGTTCTTTAGAGGTGAAAACGACCAAAAGACTTTGTGTTATTGGAGAGTGACTAGACACAAagatatcacattatatccatcaggttgactactaccaaaaccaacaaaccaaatagaagacaacatgttggcaaagttttagagaaaatggagcattggtccattgttagtagcattgtaaaatgtgtgagaatatagaaagaagcacggagtttcctttaaaaactTGagccgggcatggtggcacatgcctttaatcccagcacttgggaggcagaggcaggcagatttctgagttcaaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaaaccctgtctcgaaaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaaaccaaccaaaaccaaaaaTTATCGTGCCCCAGTGGAACCATTGTGGTACGCTAGTTAGTTTTTCgggctggtgagatggcttgccaggtaagagcacctactactcttccaaaggtcccgagttcaaatcccagcaaccacatggtagctcacaaccatctgtaacaaaaatctgatgccctcatctggagtgtctgaagacagctacagtgtCtaaataaataaataaataaataaataaataaataaataaataaatCTta e myoLuc2.GL429770 25953473 33307 + 30916457 I e rn5.chr9 92310106 6583 + 121549591 I a score=27028.000000 s mm10.chr1_GL456221_random 197865 375 + 206961 gaactgccaaaatgatttagcaatttcacttctggacctagatccaaaagagtcagaagcagaacattaaagaaatctcagcaaactctccactgaagcattattccccatagacaagagatTTagtattccctgcaggctcatgtactggaatacttggatgctagttggtggggtattgtgtaacccctgagatgtggatctgactgagggaaatagtcactgggagaaggGTGCTGGTTgcaaaaagcatacctttcatctcaagaggaatatcagatagtttagtctggagcaaaatatgattgaacaacctgggagcacagacttaggttaccccaaaagccatgtaccaatgtggcaacagtttcatga s rn5.chr9 92316689 373 + 121549591 gaactgccaaa-tgatttagcaatctcacttctggacatagatccaaaagagtcagaggcagaacattaaagaaatccctgcatatcttctactgaaggactattcccagtaaacaagagatTTagtgttccgtccaggctcatgtactgcaatatttgaatgccagctggtggggaattgtgtaacccttgagatgtggatctaactgagg-aagtagtcactgggagaaggGtgtagattgcaaaaaacaaaactttcatctccaggagaatatcagatagtttagtctgtaatataatacggctgaacaacctgggtgcacagacttaagttaccccaaaaaccatgtaccaatgtggcaacagtttcaaga i rn5.chr9 I 6583 I 200 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=18704.000000 s mm10.chr1_GL456221_random 198240 314 + 206961 tttctatggtaagaaaataaaatcataaattaaggcaattttctaatacattggtgggaatgctggataggtggctatagcaaagtggggggacccctctatctg----------------atgataatcttaccctttgggttggtggaagctaggggactattagtatattctgaaagggttttaatcttatagtcatgggctactaggtcaaccacagaggtaggtgatgtgtggctctgaaaagggcataaaatagtcaaagataagtttttcctagaattgaaacattccagctcttcattcccatgaagattctaccagtcagt s rn5.chr9 92317262 308 + 121549591 tttttatggtaataaaataaaatcacaaattaaggcaattttctaatacattggtgggaatgttggataggcagttacagcaaagtgggggaacccctctatctgcctcagatgatatctgatgacagtcttaccctctgggttggtagaggttaggggactgtta---tattccaaaaggacttta-ccttatagtcatgggctattaggt-------------ggatgatgcatggctctgaagaaggcataaagtagtc-----taatgtttccctagacttggaacattacagctccccattaccatgagaattctcccagtcagt i rn5.chr9 I 200 I 521 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=34656.000000 s mm10.chr1_GL456221_random 198554 533 + 206961 caCCATTATAGAATCCTTAACACAGGTGCAGCTTT-------------AACTTCAGGTCACAGGACCTTACAGTTTGTAGTTTAATATTACTTCCTGATCCACCGAGATGTAAACAAGTAT----------------TTACAgtgatgagctgcccctaggccatgcccaccctgccgtgatgcactgtaccctcaaaccaagaggcaaagcaaatgtgt-gtcctttacactgcttcttgtcaggtgtgtcaccacagaaaccagacactaggaagtga-gtccctgatgtcatta--cttgacaggtggtttatagacattaggaagagctctgtgggagaaatagaaagagttggccttgtaggctagagcagcaata-aggtcaatgtgctgttctagtgggagatttaaggttgagactgtcaaccaggttcatgaagtttcagaaagactctaacaggaactggggtagtggtcaattatgttacagttggcatagagtct------------gcctgcattctaaaaatttgagtgagact-aaatgttaaaatatttacatttaatttaaat s rn5.chr9 92318091 580 + 121549591 caccattatagaatctttaatacaggtgcagctcttttcTTCCCTAGGAACTTCAGGTCATACAACCTTACAATTTGTAGTTTAATGATATTTCTTGGTCCAtcgagatgtaaacaagtatcttcatgcttctgccactacagtgataagctgccattatgccatgcctaccctgccatgatgcactgtaccctcaaaccaagaggcaaagcaaaattgtccttctttacattgcttcttgtcaggcctgccaccacagaaaactgacactaggaagtgaggttcctgatgtcattaacctgaccaggcggtttatagacatttggaaggggtctgtgggagaaatggaaagagttggctctgtaggctagagcagccctagagttcaattggctgttctggtgggatattacaggttgagactgtcaaccaagtctgtgaagtttcaaaaagattcttacaggaactggagtagaggtcattaatgttacagttggcatagagtctggctaccacacagcctgtattctaaaaatttgagcgaggctgaaattttaaaATATTTAAATTGAATTTTAAT i rn5.chr9 I 521 I 9714 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=0.000000 s mm10.chr1_GL456221_random 199087 2357 + 206961 ttaaaatatttaaaatataaaaataaaataatttgtttagtgaggaaaatttcaaagcagtgtatcacctgggctatagaatggttactgcctactgtatttacccaggtttacagtgagggaaggtgagaagacaggcaaaatgtgtaatttggagagaaggactataaactggttgaagttgtgacactaatatgaagtttgatgtgcaaagggccccgacgcttgttaactttggggacagagcaggtgtaggtaaagtacatgcaattgttaaaagattagcaacattaaagagataacctccgactttgcacaaggacaacaggaaagttgctttgagggcaagaacccactcatggaaagctccagaagatagcagtgtaaattcatttgcaatgagagcgcgtctaacaatgacagagcctcaagggagccctgttgaaaaatggctgcttaactaagtaagtgtctttttagttcagttatgaagtcacagaaaggctgtggtagttgttcaagggggacaggccgcatcttgagctgacagcagctgggtaccatctgcatggtactgatgttgcaaggttcaaaatgccagagtgagggagtcatgaaagcttgcaacacggttccaggaggccactggagccaagcaatgtgtagcagggtGTCGTGAGCATGCTGTGTCACAAACAGAGGTAAACGTATTTATGTCTTTCTAAAACATTTTATTGAATAATAACAAATCCACAAGCAGTGGTTTCACTGGTAGTCATCTGTCAGATAGCTCTGCTTTCCTTAATGACCCTGGCCAAGGCAAACAGGCCATTCCAACATAATTACTAACTCTTAGCTGATACATTAAACATAAGTTTATAACTTACTAACAACATAAGTCATATGTAACATGTCTCTATCTACCTCTATCCCTATATCTATATATTACAGGCTAGCTACCAAGAGTTAAGGTGGCAAACACTTGACAAGCCAGAGTTGGGAGACAGCTGGAAAGTCATAGGAGTCTGTAGGGTGAGATAACAAAGGACCCTGAGCCCTCTGGACAGGCACTGAAGTCATGGTTGGATTTGACTGCAGGGTCATGGTTGAGCTGTAGAGTTGAGTTCCACTGCAGAGTCTAAAAGGCAAGACTGGGTCCAGATGAATGGATGAGCAATTGCACTGGATGGCAGCGCAAGATGGATCAATAAGAGGATGGTAGATGGCAACTTGAGTAATCTGTGGCAAAGTGGGGACCAGGCTGAATCGAAGGCATTGGGACTTCAGGAATTCTTCACCCATTAGACCCTCGATGCACCTACGGAGTGGTCAGATGATAGGTTGGTGGGGACCATCACCATCACAGTGCCAGGTGTTCTCTTTAAAGGGCATAGATGAGGGAGCCACGTGCTTTCTCAGACTGGTATCTTTGGTTTGGTTTTTCTGATATGATTTTAATTTGCTTATAGGAATCTACATATAGTCCCAGTTCACTCTAACAAGTTTATAGAGAGGACCTTCTCTATACCCAGGAGTAAGTAATTTATCATCTGTGTTGTGTAGTCAGGGTTAAGCAGATGGTGCTGTTCATACTTCCAGCCAGGCAGAGTCATCCTACATCTGCAAACAGAATCTCAAGCCTCTTGTAAAAAGAAGTCTCTCagcccggcagtgaggtgaacacctttcatcccagcaccagtgggtctctgagttcgaggccagcctggtctacagagcaagttccaggacaactaaggccacataaagaaaccctgtcttaaaaaatccaaaCAAACCAAAACCCAAAACCTACCTCTCACCCTCCAGAAGGCAAGACACAATCTGAAAACAACAACAACCATGACAACAGAAACCTCTaacaacattaggaacaaaccagtaccccagagcacttgactctatctgcatatgtatcaaaagatggcctagtcgccatcaatggaaagagcggcccattggacttgcaaactttatatgcaggggaatgccagggccaaaaattgcgagtgggtgggtaggggagtgtgtgtgtgtgggcgagggtatgggggacttttgggatagcattggaaaagtaaatgaggaaaatacctaataaaaattaaaaaaaaaAACCCCTAGCACATTCCTTTACACACTAACACCAggccatattctcttcatgggatatccgagtctgctgtgcatgaagctgtaaggtgaagcctatattacaatggagatcagaaatccaggaagtttgccaaggcaagctgcagtcactgggtggaaatgtcccacgagaggaactacaatggcttcgggcaacagagctggagggccagggctaatca e myoLuc2.GL429770 25953473 33307 + 30916457 I e rn5.chr9 92318671 9714 + 121549591 I a score=41691.000000 s mm10.chr1_GL456221_random 201444 653 + 206961 agccctAGTCTAAGG-AGCTGAAACAGCTGGTGTAGCCCCTCATTAGCGTGAGCAAACAACCGGGAGCCTGTAAGTAAGCAATTAAAGATAAAAAACAATTTCCTGATGTGAAGGAGCTTCTATGGAGGAAGCCTGATAAGGAAGGGGAGAGATGGGATGGAAAAAA---CCTAATTAGCAATCCAAAGAGCAGCTTGTGGATGCTTCCAGAATACAGGGGGAAATGCTAAGGTGATGGCTACACCTGAGAAGGTGGCATGTCCAGGGATGACCGGTGGACCAAGGGCC---TGGGTGAGGGGGAAGGGCTGAAGTAGGGTGGCTGGAGACGTCCCAGACAGATCAAGACCATCAAGAATTGCATCATTCATTCCAACAAAAAGAAGGCAAGCATCATCCACTTAATAGATGGAGTGAGTGGCTCAGACATGGGGAGAGTGAGGAACCCTTACAGTGACAGGGAGCTGGCCCTGGGATGCAGACAGATCAGAGCTATCTCTGTATC---------GTCTCTGCAGGAGGAACTTGCCAGATGATGGGGTgtatggtacctcctaggttgcccatgctccagcagatggctccacacccagaatcaactggattcactgagatatgaatatgggaagggcatgtgctggaagtcaggggaagctgtagga s rn5.chr9 92328385 661 + 121549591 AGCCTTATTCTAAGGGAGCTGCGGCAGCTGGTTTAGGCCCTCATTAGCGTGAGCAAACAACCGGGAGCATGCAAGGAAGCAATTAAAGATAAAAAACAATTTCCTGATGTGAAA-AGCTTCTATGGAGGAAGGCTGATAAGGAAGGGGAGAAATGGAATGGAAAAAAACCCCTAATTAGTCACCCAAAGACCAGCTCATGGATGCTTCCAAAACACAGGGAGACATGCTAAGGTGATGGTTACACCCAAGAAGGTGAAACA-CCAGGGATGACCTGTGCACTTTATGACCCATGGACCAAGGGGGAGGGTGGAAGTGGGGTGGCTGGAGGTGTCCTAGACAGATTAAGAACATCAAGAACTGCATCATTCATTCCGGCAAAAAGAAGGCAAGGATCATCCATGTAATACATGGGGTGAGTGGCTCAGACGTGGGGACAGTGAGGAACAGTGACAGTGTGTGAGGAACTGGCCCAGGATGCAGAC------GAGTTCTTTCTCTGTCATCCAAAATGTCTCAACAGGAGGAAGGTGCCAGTTGATGGGGTgtgtggcgcctcctaggttgcccatgctccagcggatggctccatacccagaattaattggattcagtgagagatgaacatgggagggggatgtgccggaagtcaggggaagctgtagga i rn5.chr9 I 9714 I 486 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=14573.000000 s mm10.chr1_GL456221_random 202097 208 + 206961 ggacaacagtcagcatggatctgggCTCCTGCTTCCTTAAGTGTTTCATAAAAAAAGACTAAAGAGGCATCTGGGAATATTCGCTTTTTCTTTGTAAAGGGGAAAAAAAAGCATTCAGAAACACCTAAGTGGATTTTAGCTCCTCTGAGTCTTTTACCTTTTT-CTTGAGTTCCATCATGACAATCAAATGACAGCATGATGGGCAAGG s rn5.chr9 92329532 205 + 121549591 GGACAACAGTCAGCATAAGCCTGGGTTCCTGCTTCCTCAAGTGTTTCATAAAAAAGGACTAAAGAGGCATCTGGGATTTTTCGCTTTTTCATTGTAAAG----ACAAAAAGCATTCAGAAGCACCTACGTGGATCTTAGCTCCTTTGAATCTTTTACCTTTTTACTTGAGTCCGATCATGACGATCAGATGGCAATACGATGGGCAAGC i rn5.chr9 I 486 C 0 e myoLuc2.GL429770 25953473 33307 + 30916457 I a score=-1795.000000 s mm10.chr1_GL456221_random 202305 8 + 206961 -GC--------------ATGGAT s rn5.chr9 92329737 19 + 121549591 -GCTTTGTTAA---TATACCAAC i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 25986780 23 + 30916457 TGATTTGACAATTGTAAAGTGAT i myoLuc2.GL429770 I 33307 I 214 a score=7009.000000 s mm10.chr1_GL456221_random 202313 111 + 206961 TTACCCAGTCCAATCAAGCCTCTGCATAAGGTCCCAGAGAAACAATCCACGCAATGCGCAGTACAAGGACCGTCCAGCAGAGGGAAGCATAGGCCCTGGTATGGGCATTCA s rn5.chr9 92329756 111 + 121549591 TTATCTCATCCGAGCAAGCCTCTGCATAAGGTCCCGGAGAAACAATCCGCCGTAAGCGCAGTTCAAGAACATTCCAGCAGAGGGCAGCATAGTCCTTGGTACGGACATTCA i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 25986803 214 + 30916457 I a score=-2501.000000 s mm10.chr1_GL456221_random 202424 18 + 206961 TCGTGTCCTGGC---------CACTGT---------------- s rn5.chr9 92329867 23 + 121549591 TAGTGTTCTGGCATCC----TCCTTGT---------------- i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 25987017 42 + 30916457 -ccttttctagttcacaggggcatcatatgggtaaatggaggc i myoLuc2.GL429770 I 214 I 318 a score=12458.000000 s mm10.chr1_GL456221_random 202442 191 + 206961 CCTGATTTGTTAGTTGTTTAGGTATAAACAGAGGCACAAGGTGGCCAGACACAAAACAGAAAACAAGACTGATCCACTTCTGACCTCCAGTGCCACCCACAAAGTAAACAGAAGGCACACAGACAATTGACCAAAAGTCTGAAAGAGCCTTGAAGAGAAGTCCCTGG-GGCAAGCCACAT-CCAGAGACCTAT s rn5.chr9 92329890 193 + 121549591 TCTGATTCGTTAGTTGTTTAAGTATAAACAGAGGCACAGAGGAGCCGGACACAGGACAGAAAACAAGACTGATCCACTCCTGACTTCAAATGCCTCTCACACAGTAAACAGGAGGCACACAGACAACTAACCAAAACTCTGAAAGAGCCGTGACGAGAACTCCCTGACAGCAAGTTACATGTTGGAGACGTAT i rn5.chr9 C 0 I 57 e myoLuc2.GL429770 25987059 318 + 30916457 I a score=0.000000 s mm10.chr1_GL456221_random 202633 69 + 206961 CTATGCTCCTGCCCCTGGACTggggcgggtaggggtgggggtgtagggggaggggtgagaaggggggag e myoLuc2.GL429770 25987059 318 + 30916457 I e rn5.chr9 92330083 57 + 121549591 I a score=495.000000 s mm10.chr1_GL456221_random 202702 15 + 206961 gaggggggggaggag s myoLuc2.GL429770 25987377 15 + 30916457 gtgtgtgGGGGGGTG i myoLuc2.GL429770 I 318 C 0 e rn5.chr9 92330083 57 + 121549591 I a score=5357.000000 s mm10.chr1_GL456221_random 202717 357 + 206961 ----------------ggctgggagttg-------ggggggATTTCCTTGTGAAAGCAATACTTATTTAAGGTGGT-----ACCTATGGGTGTGGAACACAGAGGGAGCAGGAAGATAGGATTTCTTCTG---GGTGACTATGAGGAAGAGGTGGTGGTGGTGGTGGGAGCACACAG-----TGTGCTCTGTT-----CTCGA------CAGGGAT------------------------------------GGCAGTTATAGTGCTGACTAAGAGAAACCAACCGGAAGGACTGGAATTTGCAAAGCAGTGAGGTGCTCTCTGCTACTGG---GGGCTGG------GAGAGTA---TCCGTGTTCCAT----------------GAAGGCATGGAACATAGAAT----------------------AGCACCCCCAGTGATTTGCAGAACCTGGGCTGTTTAAATAAAAA--TAAAagaataaagaagaaa---------------- s rn5.chr9 92330140 377 + 121549591 ----------------cgcccctgccTT-------GAAGGTAATTCCTTGTAGAAGCGATACTTATTTAAGGTAGT-----TCATATGGGTGTGGAGCAGAGAGGGAGCAGGAAGTTGAGATTTGT-------GGTGAGTATGAGGAAGAGGTGGTAGTGGTG--GGGAGCACACTG-----TGCTCCGCGCTAG---CTCGA------TAGGGATTAGTCTGCGGCCTGTCTTAGGA-----------AAGGACAATTATAATGCTGACTAAGAAAAGCCAAAAGGAAGAACTGGAATCAGCAAAGCAGTGAGATGCTGGCTGCTACTGG---GAACTGG------GAGAGTG---TCCGAGTTGCAG----------------GAAAGCACGGAACATGGATG----------------------AGAATCCCCAGTGGTCTGCA-AACCCCGGTTGTTCAAATAAAAA--TAAAGGAATaaagagaaag---------------- i rn5.chr9 I 57 C 0 s myoLuc2.GL429770 25987392 462 + 30916457 GGCGGCACACCGAGCAGGCCCTGaacagcagggacaaaggaacctatgtgttgaga--------aatcaggctggtggccacccaaggggtgtgg------------gtaggga-ttggattatgttctgtttcttgact------------------tggtgctgggtacacatgggctcttgctttgtgttaattcctcaagctgttcaggtatggtgcatgcatttgtccttaaacacatcacaccagtgctactcagcatgtggcctgtgatgagacaggggcttgaccagga---tagaaatcagtgcactgctgcct-ccactgggtaggtctggccacaaaacagtgtgttcagtgtcacagttggttcacaagctctgtagacctgcaacaaacaggcttgtaggtggcaccagtctgtagactccactttgaatagca---cctgctatactttaataataagttAATGGGACTAAAAAGACCAATGTTGCTTGTGCCA i myoLuc2.GL429770 C 0 C 0 a score=4087.000000 s mm10.chr1_GL456221_random 203074 152 + 206961 aggaggaagaggaggaggaagagagaggaggaagagggaggaagaggaaaggggggaggaggaggaagaggagagggaggaagaggagagggaggaagaggaggaggaggagaagaag------aagaggaagaagaagaagaagaagaagaagaaga s myoLuc2.GL429770 25987854 157 + 30916457 GAGAGGAAGGAGAGAGAGACAAGAAAGAATGCTGAAGAAGTAAGTTATAAAAGCAGAAGAAAAGTGAGTATaggaagaggaggagaagagaaaggagaaggaggagg-ggaggaCAGGCCACCCAGGAGGCACAAGAGTTCAGAGGGACAGAAGCAAA i myoLuc2.GL429770 C 0 N 0 e rn5.chr9 92330517 0 + 121549591 C a score=0.000000 s mm10.chr1_GL456221_random 203226 56 + 206961 agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaCGAAT e rn5.chr9 92330517 0 + 121549591 C a score=75360.000000 s mm10.chr1_GL456221_random 203282 1387 + 206961 ACAGAGGGAGGGGAAAGGGAGGAGAGAGACTGTGGGGGAGAAACAGAAGATTCCAGAGCT-----------CATTTCTTAAAGCAAGCAGTAGTTTTTGTGCACCATAGATGTGTGGTGGGATCAAGAGTTGGCTCCTCGAGTAATGGGGCTTGCTATGTAAGCCTGGCACACTGAATCTCATTCTAGGAGCCTGAATTCCACAAAACTCATCCTCTGCTCTCCATAATACTCATCCTCTGACCTACTTAGGCACCCTTTGGCCCATGAGTCCTTTCGTAACAGTGCGGGTTGCCTATGCATA--GTTATGTCtgtatatgggtgttttgttttccttgcatgtatagctgtgtaccacgatcatgcctggtgctcccggaggctagaagaagtcattggatctccttgagctggagttaaaagatcattttgagccaccatgtggatgctgggaatcaaaaccttggtcctctggaagagcagccagtgctccttaacctttgagccgtctGGGAAGACCCTGGATTTCTAGAAACAACCCTGATTCATAAGCTGGAGATTTTCAGTGTAGGGTGAGCAATATTCTCGAACACAGATTCTCAGCAGTG--------GTCCTCAGT--GGTCAAACATTATATTTTTATAGGAGGGGGAAAAGATGAACAACACCACACACATAGTCCAGTCCATGCATGTCTATATATAAGTAGTCTTAAGCTAT----CATGAGAAGGTTGTGGTGAGAAAAGAAATATCCAAAGGGCTCTTTAGGGCAGTGGAAGTCTGGCTTAGAGCAGCCTGGCTGCTCTGACTGTGGGTCCCCGCTGGCTGCATCTTGAGACCCACAGTGCCCCATCCTTACCTTGTGTGGTTCTTCGTGCTGTGCTG------------GGCCTCTTTCTACCACTTGTTTTTGATGCCTCTTTGCTGATCTCTAAAAGAAAGAAGAAGAAAGAAACACTGTTCTTTGTCCGTGGACACTCCGTGAGGAGTCTCCCAACCCTCGAAGGGCCTCACATACTTCAGAGCTGAGGATTGCAGACTCCAAGTTGCCTCCTCTCCCGAGGGTGGGAAAGTGGAAAGTTCAGTATAGAAAGAACACTTCTGTCACGTCTCCAAATTACATAGTTGTCCCAAGAA---TATGTATGTGCCTGTGTTGCTAGCTCACAATATAGTTCAACACTTTCCAAATGTCTGAGACATTATAAAGTCTTATATGAGTAGAAGACCTGTCCAAGATGGAGagccagatgtggagggtcacacgttgaatctgagtacttggtaggcagaggcaagtgtatattatctttctgaatttgaagccaggctgatttacatagtgagtttgaagccagctaggggtacataacaaacaaacaaacaaaCCAAACCACTGCATCAAAAAAAA s rn5.chr9 92330517 1364 + 121549591 gcagagggagaggaaggggaggagagagattgtgggggaaaaatagaagACCTCAGAGCTACGTAGGTGCTTGTTTCTTAAGGTAAGCAGTAGCTTTTGTGGGCCAGAGATGCGTGGTGGGACCAAGAGTTAGCGCTGATAGTAATGGGGCTTGCTATGTAAATCTGGCAATTTTAATCGGATTCCAGGAGCTCAAATAAAGGTGCAAGGAGAGACCAAACTCTGCAAAACTCATTCTCTAACCGCCGCATGCACCCTTTGGCCCACAAGTCCTTTCATAACGGTGCAGGTTGCttatgtgtagtgttatgtctgtatgtgggtgttttgttttgcttgcatgtttagctgtgtaccacaatcatgcctagtgctcctggatgccagaagaagtcattgtatcccctagagctggaatt-taggacagtttctagccaccatgtggatgctgggag---------------tctgaaaaagcagccagtact-cttaacttctgagctgtctGCCCCGAGACTGGATTTCTAGAAACAACCCTGACTCACAAGCTGGAGATTTTCAGTGTAGGGCAAGCAATATTCTCAA--GCAGATTCTCAGCAGCAGTGATGCTGTCCTCAGTGGGGGCAAACATTTCCCCCTTTCAGGAGGGGAAAAAGAT----AACACCACACACACA---CAGTCCATGCCTGTCTATCAGTAAGTAGTCTTAAGCTATCATGCATGGGAAGGTTGTGGTGGGAAAACAGACACCCAGAGGGCTCCTT-GGGCAGTGAAAGCCTGGCTTAGAGAG----TGCTGCTGTTAGTGTGGGCGCCTGCTGGCTGCATCCTGAGACCCAGGCT-CCCTATCCTTACCGTGTATGGTTCTTCCTGCTGTGTGGGGCCTCTTCTGAGGCCTCTTTCTAGCCCTTGGTTTTGATGCTTCCTTGCTGATCTCTAGAAGAAA----AAGGAAGAAATGTTATTCCTTGCCTGTGGACGCTCCATGAGAAGTCTCCCAA-CCTCACAGGGCCTCTCATACTTCAGAGCCGAGCACTGCAGACTCTAGGCTGCCTCCTCTTCCCAGGGTGGGAAAATGGGAAAGT---TAAACATAAAATACTTCTGTCACGTCTCCAGAGTCCACAGTTGGCCGAAGAAGACTGTGTATGGGCCTATGTTGCCAGTTCACTATAAAGTTCAACGCTTTCCAAACGTCTGAGGCCTTATAAAATCTTATTTGAGTAGCAGGTCCATCTGAgatggggaggcag----------------gtttaatttgagtacttggtaggcaggggtaagtg-----tatctctctgagtttgaagccaggctgatctccacagtgagtttgaagtcagctaggactacat---aaacaaacaaacaaa-caaaTCACTATATCAAAAAAAA i rn5.chr9 C 0 I 106 a score=0.000000 s mm10.chr1_GL456221_random 204669 82 + 206961 AAAAAAACCTCaaaaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaGA e rn5.chr9 92331881 106 + 121549591 I a score=15781.000000 s mm10.chr1_GL456221_random 204751 273 + 206961 TCAAAGAGATTGGacacaaagagatctacccgcctttgcctcctaagtgctgggattataggcacaggctaa-----cacatgcagctggcgaaacagtttatTTTAGCAGAGAACAAGAGTACCAGAGATGAGGATTCAGAGTCTAGCTGAGAGATGATGGGGCTGGTTAAGAGCATGCAGTGCCCTTGCAAAGGACTGGAGTTCCATGTGCAGCGAGATCCTCTCTCCATCCTCAGCCACAGCCA-CAGTCAGGTGCGTGAGTTCAGACGCAGCTCT s rn5.chr9 92331987 271 + 121549591 tcaaagagattggatacaaagagatccacctgcccctgcttcctaagtgctaggattataggcacgggctatgctatcacgctcagctGGTGTGACATTTTATTTTAACAGAGAGCAACAGTGGCAGAGACATGGATTCAGAGTGTAGCTGACAGGTGATGGGG-----TAAGAGCACGGGGTGCCCTCACAGAGGACTGGAGTTCCATGTAAGGCTAGACCTTCTCC---TCTTCAGCCACAGCAATCCATCAGGTGCATGAGTTCAGAAGCAACTGT i rn5.chr9 I 106 I 128 a score=39007.000000 s mm10.chr1_GL456221_random 205024 635 + 206961 AAGCATCTACCTGTTTCTCACAGAGCCCGACATCACTGAGAACTGCAGGAGCTTGCATGGACACCCGTCTTCTAAGTTTGTTTTTGCTTCAGAAATAATTTTCTCTCACATGCTTCCTT----GACCAAATTATTTCACTTTAAACAAAGATTTTTTTAATTATGTTTTTTTAAACTATGAATAATGGAGAAACAGGTAGACATAAACAACACAGACATAGACCTTGGGAAGTTCTTAGTAATCTTTAAGATTGTTAAATCTAAAGGGTTGACACCCTCTGCCTTAGGTCTCAACTGAGGTGACCTGTAGCTGTTTCTTTATCAAAAACTCCTTGGCCA-----TTCGTTGCCTCTCTTTGCTCCTCGCCTGTTC---------TCTCTGAAAATCTCTCTGCTAACACGGAGGTCATGTATCCCCCGACCCCTGCACCAGCTCTGAGAGATTTGCCCAGGCTGAGCCTTTCCAATGGCAGGTGCCACCCTCAGCCTTACCTTGTGAATTGGATGTCTGGGCACACCTCATCCTTGCTCTCAGTGTCTTGGTCACCTCCTTCACGTTCGTAGATGAGTCATCTTTCCACAAAGTCTTCCTGCTCACCGCCTTGAGCTTCTCTTGAACTCCATGTCCAGGTGAGGCCACTCCTG s rn5.chr9 92332386 646 + 121549591 AAGAATCTACCTGTTTCTCATGAAGCCCAGCATCACTGAGAGCTGTGGGAACACGGACTGACACCTGTCTTCTAATTTTGTTTTTGCTTCAGAAATAATTTTCTCCTACACGGTTGGTTATGTGACCAAATTGTTTCACTTTAAACAAAGCTTTTTTTT----TATTGTTTTTAATTGTGAATAAAGGAGAAATATGTAGACATAAACAACACAGACGTGGACCTTGGGAAGTTCTTAGTAATCTTTAAGGTTGCAAAATCTAAAGGGTTGACATGCTCTGCCTTAGGTCTCAGCTGGGGTGACCTGTGGCTGTTTCTTTACCGAAAACTCCTCCTCTGAAGTGGATATTGCTTCTCTTTGCCCCTCTTCTCCCCGACCCTCATTCTCTTAATGTCTCTTTGCTAACACTGAGGTCATG---CCCCCCCCCCCCATGCCAGCTCCAAGAGACCCTCCTGTGCTGAGCCTTTCCAATGGCAGGTGCCACCCTCTGCCTTACCTTGAGAACTGGATGTCTGGGCACAGCGAGTCCTTTCCCTCAGAGTCCTGGTCACTACCTTCACGTTCCTAGTTGAGTCATCCTGATTCAGAGTCCTCTGCCCCACCACCTTGAGCTTCTCCTGAACTCCAGGTCCAGGTGAGGCCACTCCTG i rn5.chr9 I 128 I 64 a score=0.000000 s mm10.chr1_GL456221_random 205659 40 + 206961 CTGAGACGACTCATGTGTGGTTGAAATGGAGGTTCATGGA e rn5.chr9 92333032 64 + 121549591 I a score=282.000000 s mm10.chr1_GL456221_random 205699 3 + 206961 ACA s pteVam1.scaffold_15734 14947 3 + 27100 ACA i pteVam1.scaffold_15734 N 0 N 0 e rn5.chr9 92333032 64 + 121549591 I a score=0.000000 s mm10.chr1_GL456221_random 205702 1 + 206961 C e rn5.chr9 92333032 64 + 121549591 I a score=64922.000000 s mm10.chr1_GL456221_random 205703 1257 + 206961 TCCTTCCTTCCTTCATAGGCTCCCCATCCCAGCCCCTATTCCAGGTGAATGTACCTCACTTTTGCTGTTTTCTCTTATGTGCACCATGCTTTCTCCCCCCACA-TCACCATAAGTTCCCACCCCAGGGAGCTCTTATAAGAATTAACCAGGTagctgggcagtgctggtgcacacatttaatcctggcacttg------agaggcagaggcaggcaggtatccgtgagtttttgatttcttgaggccagcctggtttacagagctagttccaggacatccaagggcacacaaagaaaaacc--------aaaccaaaccaaaaccaaaccaa---ccaaac---aaacAAAGATTTAACCAAATAAATAAATATGGAGGGATTCGGGATCAGGGCAGATTCTGATTCCTGTTTCTAAGACTCGTAAACCATGAGGCACAGGCCTGGGATTTTTCAGGCAGTGAGGAAGGGACTTCC----ATGTAGC-ACCCATGTTCAGACAGGCAACACCCGAAGGCCACTGGGCACCTCT-------AAAGCATCGCAGGGACAGCCCTATGCCTGTCGT-GAAGACAGCTTCTGGGCGAG---------GGGTGGCAGAGGCCCAGAGGCTCTGCAGTGGACAGGACTGGTGGATGGATGAGTGGCCTTCACTGAGGAG-GGGAGGACACAGCACTTTTTCCTCTCGGGACTTTGGAAGCTGCCTCCCCAAGGACAGCTGCA-TCCACAGGCATGAGAACACCTTTCTGAAGCTTTTCTGGGGGCTTTTCCTCTGAACTGCCTCTCAGGGCTAGGACCCAGGCTCTTCTGCACCTTATCTCAAAGTAGCAAAGTTTATTTACTCTCCCTTTAGTTAGGAAGGATGAATGCCATCCTAGTGTGTATAAATAAAGAGGAAACCTGACACTCTGCACCCTTCACCTTGGGCTGTGTAACC-----TCAGAACAGGATTCCAACATGTTCCAGTTCACCATTTACTCAGTGGCAAAACAGGTCTGGTGAAATTTAAAGCCAGTTCGCTGTGCTGACAAGAAATCTTGTGTGCCTGCCTATATAGTGAGTTCAGAACGAACTCCATCAGATCTACAGCCTTTGCTGAATCCTCCTCCTGTACCC-----CCTTGCTGGAGTCTCCTCCAGCATCCC------------CTTACCCATCATCTCATCTTGACAGGGCTTTTTTTTCTGCTGTCTTCTTTTGGAATTTGACCAGTTCGGATTCAGTGTGCC--------AGAAGAAAAGAAAACAAAGTCTTTTATAGTCACATAGAGCTGTCAGTC-TTTTTTATTTAAAGAATT s rn5.chr9 92333096 1289 + 121549591 TCTTTCCTTTCTTCACAGACTTCGCATTCTACCTCCC-TTCCAGATCGCTGTACCTCACTTTTACTGTTTTCTCCTATGTGCACCTCACTTTCTCCCCCCAAAGTCATCACATTCTCCCGccccagggagctctcataagaagtaaccaggtagcctggtagagctggtgcatccctttaatcccagcgagtgggaggcagaggcagagacaggcaaatctctgtgagcttt-gatttcttgaggtcagcctggtttacagagcaagttccaggacagcccgggcaacacaaagaaaccctgtcttgaaaaacaaaaccaaacccaaacccaaacccaaacccaaaACAAAAAATTAGCCAAATAAATA----TGGAACGATTGGGGATGGGGGGGTGATTTCTGACTGGTTTCTAAGACTCATGAACCACGAGGC------CTGGGATACTTCAGGGGGTGAGGAAGGGCCTTCCTTCCATGTAGCTACCCATGTGCAGACAGGCAACATCCAAAGGCCACCAGGCACCTTTTGTGGGTGAAGTAACGAAGGGACAGCCCTATGCCTGCCATTGAAGGCAGCTTCTGGGCGAGCCACCAGAGAGGCTGCGGAGGCCCTGAGGTTCTGCAGTGGGCAGGACTGGTGGAGT----AGTGGCCTTCGCTGAGGAGAGGGAGGACAGGGCACTTTTTCCTGTTGGGACTGTGGAAGCTGCCTCCCACAGGACAGCCACACTGCACTGGCAGGAGAGCTCCTCTCAACAGCTTCTCTGGGG-CTTTTCCTGTGAATTACCTCTCAGGGCGAGGACCCAGGTTCATTTGCCCTTTTTCTGAAAGTAGCATAGTTTACTTACTCTCCCTTTAGTTGGGAAGGTTGGTTGCCCTCCTAAAGTAT----GTAAAGAGGAAACCTGATACTCTCTACCCTTCACCTTGGACTGTGTAACCTGCCATCAGGACAGGATTCCAGTCTGCTCCAGTT----------------GTGAAACAAGTCTGGTGAAATTTAAAGCCAGATCACTGCGCTGCCTAGAACTCCTGTG----TGCCTATCCAGTAAGTTCAGAACAAGTGGCAACAGATCCACAGCC-CTGCCAGAGCCCCCTCCAGCATCCCCCAGCCCTGCCAGAGCCCCCTCCAGCATCCCTTTCAGCATCTTCTTACCCATCATCTTATGTTGAGGGGGCTTTTTTTTCTGCCGTCTTCTTTTGGAATTTGACCAGATGCAACTTTTTCTTTTTCTTGCTAAGAAGAAAAGAGAAC--AGTCTTTTATAGTCATGTAAAGCTTTCAAACtttttttatttaaaaaatt i rn5.chr9 I 64 N 0