##maf version=1 scoring=roast.v3.3 a score=2141.000000 s mm10.chrUn_GL456366 0 47 + 47073 GTGCTCAGCAACCCTTAAAATGAAA-TAATTCTTGATCATTGGTGTCT s rn5.chr7 143060411 48 + 143501887 GTGCTCAACAACTCTTAAAATAAAAGCCATGCTTGCTTATTTATATCC i rn5.chr7 N 0 C 0 a score=-360.000000 s mm10.chrUn_GL456366 47 2 + 47073 -GG s micMur1.scaffold_16960 4133 2 + 14372 TG- i micMur1.scaffold_16960 N 0 I 24 e rn5.chr7 143060459 0 + 143501887 C a score=1822.000000 s mm10.chrUn_GL456366 49 22 + 47073 AAGGTTCTAGAAACAGAGAAGA s rn5.chr7 143060459 21 + 143501887 -AGGTTTTAGAAACAGAGAAGA i rn5.chr7 C 0 C 0 e micMur1.scaffold_16960 4135 24 + 14372 I a score=-556.000000 s mm10.chrUn_GL456366 71 2 + 47073 TA- s rn5.chr7 143060480 2 + 143501887 TA- i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4159 2 + 14372 -AG i micMur1.scaffold_16960 I 24 I 36 a score=342.000000 s mm10.chrUn_GL456366 73 5 + 47073 TGAAA s rn5.chr7 143060482 5 + 143501887 TGAGA i rn5.chr7 C 0 C 0 e micMur1.scaffold_16960 4161 36 + 14372 I a score=1709.000000 s mm10.chrUn_GL456366 78 9 + 47073 GGTATCTCT s rn5.chr7 143060487 9 + 143501887 GGAATCTCA i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4197 9 + 14372 GGAATCTCA i micMur1.scaffold_16960 I 36 I 155 a score=8390.000000 s mm10.chrUn_GL456366 87 172 + 47073 GGATGGAGAGGTAGTGTGAAGTGGAGGAGCAAAAGAACCCTGCTATGGGTCACAGAGAGAAAGTTTTGGTGTTAGTGGGGAGTTCCCTTCCTCTAGGTGGTGTGTGTATGAACAGTATTGAATGACAAGAGATAGGATTTTTGTCATTTGCGTTACTTGACACTTTGAGGCA s rn5.chr7 143060496 158 + 143501887 GTATGGTAGGTAGATG----GTGGAGGAGCAGAGGAACC-TGCTATGGGTCACAGGGAGAAAGATTGGGGG-----AGAGAGCTCCCTTCCTCTAGGTGGTGTATGTATGAATATTATTGAGTGACAAGAGATAGA----CTGTTGTTTGAGTTGCTTGACACTCCTAGGca i rn5.chr7 C 0 C 0 e micMur1.scaffold_16960 4206 155 + 14372 I a score=358.000000 s mm10.chrUn_GL456366 259 12 + 47073 CAAGAAATTGAG s rn5.chr7 143060654 12 + 143501887 aaagaaattgag i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4361 10 + 14372 -CAGTAATGGG- i micMur1.scaffold_16960 I 155 I 5 a score=387.000000 s mm10.chrUn_GL456366 271 10 + 47073 ATACATAGAG s rn5.chr7 143060666 10 + 143501887 atatagatag i rn5.chr7 C 0 C 0 e micMur1.scaffold_16960 4371 5 + 14372 I a score=927.000000 s mm10.chrUn_GL456366 281 27 + 47073 AAGGatgtatgtatgtatgtatgtatg s rn5.chr7 143060676 27 + 143501887 aaggatagatggatggatggatggatg i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4376 24 + 14372 GCCATTGCATGTTT---TGTGTGTCTG i micMur1.scaffold_16960 I 5 I 170 a score=5436.000000 s mm10.chrUn_GL456366 308 142 + 47073 tatgtatgtatgtatgtatgtatAGACAGACAAACAGATTGTTATATGCATATGAATATGAATGAGGGAAGGACAAATGGAAGAACAGGAGATGAAGTATGCATCCTTCTTTTTTATGCCAATCCCTGGGATATACGTTATG s rn5.chr7 143060703 123 + 143501887 gatggatggatg----------------gataAACAGACAGATAGATGCATATGAATATGAATGAGGAAAGGACAAAGGCAAGACCACAAGTTGAAGTATGCACCC--CTTCTTCGTCCTAATCCCTGGAATGTGTGGTA-G i rn5.chr7 C 0 C 0 e micMur1.scaffold_16960 4400 170 + 14372 I a score=-951.000000 s mm10.chrUn_GL456366 450 1 + 47073 -A s rn5.chr7 143060826 1 + 143501887 -G i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4570 1 + 14372 c- i micMur1.scaffold_16960 I 170 I 31 a score=1063.000000 s mm10.chrUn_GL456366 451 26 + 47073 AAAAAAAATCCATCCTTTCCTG-AAAG s rn5.chr7 143060827 27 + 143501887 AAGAAAAATGCATCCTTCACTACAAAA i rn5.chr7 C 0 C 0 e micMur1.scaffold_16960 4571 31 + 14372 I a score=701.000000 s mm10.chrUn_GL456366 477 7 + 47073 GTAACCT s rn5.chr7 143060854 7 + 143501887 GTGTCCT i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4602 7 + 14372 acaccct i micMur1.scaffold_16960 I 31 I 32 a score=1924.000000 s mm10.chrUn_GL456366 484 26 + 47073 GGAACTGGGAGTATTCTATGCTTCAC s rn5.chr7 143060861 26 + 143501887 GGAACTGGGAGTATGCTATGCTACAT i rn5.chr7 C 0 C 0 e micMur1.scaffold_16960 4609 32 + 14372 I a score=338.000000 s mm10.chrUn_GL456366 510 2 + 47073 AG s rn5.chr7 143060887 2 + 143501887 GG i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4641 2 + 14372 gg i micMur1.scaffold_16960 I 32 I 24 a score=91.000000 s mm10.chrUn_GL456366 512 1 + 47073 T s rn5.chr7 143060889 1 + 143501887 T i rn5.chr7 C 0 C 0 e micMur1.scaffold_16960 4643 24 + 14372 I a score=702.000000 s mm10.chrUn_GL456366 513 14 + 47073 AGGGTAGTTATGCT s rn5.chr7 143060890 10 + 143501887 AGGGTAG----GCT i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4667 14 + 14372 gggggaattgagtt i micMur1.scaffold_16960 I 24 I 163 a score=20810.000000 s mm10.chrUn_GL456366 527 316 + 47073 AATTTGTCCAATGATATTGAGGAGGTGAGTTTGTCTATGATTGCCTGGCTTAGG-TAAGGGTTCTTAAAAGTGAAAGAAGGTGATGGGGGAAGGTGAGAGCCCAAGAATGAGATATGAGTAGAATTGGAGAATTTATTGATATTAAAGATACAAGGTAGAttatgagactcttgacacatagacatataaaatagatttacaaatcaaacacttatgttaataaatcacaaatttcttttaaaaatcattgtttagtttatacatcattttgaaattcattaaagatgaaagcaaaCAGCCAGTCTTAAGAATGCTG s rn5.chr7 143060900 315 + 143501887 GGTTTGTCAGCCAATGTTGAGGAGGAGGGTTTGTCTGTGATTGTGTGGCTTAGGGTAAGGGTTCTTAAAAGTGACAGAGGAAGACAAGGAAAGGTAAGAGCCCAAGAA-GAGATATGAGTAGAATTGGAGTGTTTGCTGACATTAAAAATGGAAGGTAGACtatgagacccttggcacatagacatataaaatagatttacaagtcaaacacttacgataataaatcacaaatgtccatt-aaaatcattttttggtttatatataattttgtcattcattaaatatgaaagcaaaCATCCAGTCTTAAGAATGCTg i rn5.chr7 C 0 I 944 e micMur1.scaffold_16960 4681 163 + 14372 I a score=0.000000 s mm10.chrUn_GL456366 843 327 + 47073 CTTCCCcaggggaaaaatttctgaacagaacaccaatggcttgtgttgtaagatcaagaattgataaatgggacatcataaaattgcaaacttatgtaaggcaaaggacactgtcaataagacaaagaggcaaccaacagattaagaaaagatcttttccaatctcacatctgatagagtgccaatatccaacgtgtacaaagaactcaagaagatagactccagagaaccaaataaccttattaaaaatggggtacagagctaagcaaaagaattttcaactgaggaataccgaatggctgtgatgcacctaaagaaatgttcaac e micMur1.scaffold_16960 4681 163 + 14372 I e rn5.chr7 143061215 944 + 143501887 I a score=4130.000000 s mm10.chrUn_GL456366 1170 373 + 47073 atccttaatcatcagggaaatgcaaattaaaacaacactcgattct-acctcacaccagtcaaaatggctaagttcaaaaactcaggtgacagcagattctggtgaggatgtgaagaaaggggaacactcctccattgcta-------tgccaactggtacaatcactctggaaatcagtctggcggttcctctgacaa-----------------------ttgtaaatagtactaccggaagatccagcaatactccttctg--gcatttaccagaagatgctacaaatgataataaggacacatgctccactatgtccatagcaaccttatttataa-tagccagaagctggaaagatgccagatgtccctcaacagaggaatggatacagaaaatatggtaca s sarHar1.chr2_GL841349_random 433493 379 - 1170679 atcactattgatttaagaaatgcaaatgaaaacaattttgaattatcatcttacatttatcatattggctaa----aaGGATaggggaaatgacaaatattggagggaatgtggaaaaatgggA-TATTAGTACACTGTTAATGGAACTGTGACCTAATCtaatcattttggagaataatctggaattatgtccaaaaagttatagAAGAATGTATATATGCTTTGAAATAGTAATACCA------CTATTATTCTGCTTTCCGaggtaattaagaaaaaaagaaaagaatt----------tacatgttctaaaataattaaaatagcatTCAAggtaaataattggaaattaagaggatacc-------catcaattgagaaatggataaacaagctgtggcata i sarHar1.chr2_GL841349_random N 0 N 0 e micMur1.scaffold_16960 4681 163 + 14372 I e rn5.chr7 143061215 944 + 143501887 I a score=0.000000 s mm10.chrUn_GL456366 1543 46 + 47073 tttacacaacggagtactactctgctattaaaaacaatgaattAAA e micMur1.scaffold_16960 4681 163 + 14372 I e rn5.chr7 143061215 944 + 143501887 I a score=971.000000 s mm10.chrUn_GL456366 1589 6 + 47073 ATGATT s echTel1.scaffold_312291 2836 6 + 42248 ATCATT i echTel1.scaffold_312291 N 0 I 3 s anoCar2.chr6 55335421 6 + 80741955 ATGGTT i anoCar2.chr6 N 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I e rn5.chr7 143061215 944 + 143501887 I a score=475.000000 s mm10.chrUn_GL456366 1595 4 + 47073 TAGT s rn5.chr7 143062159 4 + 143501887 TAGT i rn5.chr7 I 944 C 0 s echTel1.scaffold_312291 2845 4 + 42248 GAAT i echTel1.scaffold_312291 I 3 C 0 s anoCar2.chr6 55335427 4 + 80741955 TAAG i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=55368.000000 s mm10.chrUn_GL456366 1599 158 + 47073 ---ACAGCAAAGCGATTTAGAATCAAAACGCAACA--------TTCT--TAAGT--TGTCTCCTGGCACTTCAGTTGCCCTGTTATAACTCTTAGAATTTAACTTTAGAAAAATTC-TTTCTAGTTATGAACTCATATGCAGATATATACATTTGCAAAGAGTTGCTTTCTACC s rn5.chr7 143062163 164 + 143501887 ---CCAGCAAAGTGATTTAGAATCAAAACTCAAAGAGAAGTATTCCT--TAAGT--TGTCTCCAGGCACTTCAGGCATTCTGTTAAAACTCTTAGACTTTAACTATCGAAAAGTTC-TTTCCAGTTATGTACTCATGTGCAGATATA-ACATTTACAAAGAA-CGCTTTCCTCC i rn5.chr7 C 0 C 0 s echTel1.scaffold_312291 2849 168 + 42248 ---GCAATTTAGTGTTTTAGAATAAAAATTTTAAGGGGAGTATTTCTGACATGG--TGCCTCCTGGCACTTTAGATGATCAATTATAACTCTTAAAATTAAATCTTAGAGAAATTTATTTCCAATTATAAAATTATCTGTAGCTGTA-ACCATTTTTAAGAATAATTTTCTATC i echTel1.scaffold_312291 C 0 I 3 s sarHar1.chr2_GL841571_random 1957440 167 + 2798521 ---ATAACTTAGTTTTTTAGAATCAAAATTTGAAGAGAGGTATTTCT--GAAAC--TGTCTCCAGGCACTTCAGATGATCAATTTAAACTTTTACAATTGAATCTTTGGGAAGGTTATATTCAATTACAAAATCATCTGCAGCTGTAAATGTTTATAAAGAACCATTTCTCACC i sarHar1.chr2_GL841571_random N 0 C 0 s anoCar2.chr6 55335431 160 + 80741955 AACCCAACTTAGCTTTTTAGAATCAAAATTGAAAAGAACATATTTCT--GAAACTGTGTCTCTAGGCACTTCTGAAAAC-----ATAACTA-------TAAACCTTTGGGAAGATTATTTTCAGTTATAAAATCATCTGTAGCTGTAAACATTTCTAAAGAACAATTTCCCAAC i anoCar2.chr6 C 0 I 3 e micMur1.scaffold_16960 4681 163 + 14372 I a score=2730.000000 s mm10.chrUn_GL456366 1757 2 + 47073 TT s rn5.chr7 143062327 2 + 143501887 TT i rn5.chr7 C 0 C 0 s echTel1.scaffold_312291 3020 2 + 42248 TT i echTel1.scaffold_312291 I 3 C 0 s sarHar1.chr2_GL841571_random 1957607 2 + 2798521 TT i sarHar1.chr2_GL841571_random C 0 I 3 s macEug2.GL138109 11404 2 - 26650 TT i macEug2.GL138109 N 0 I 182 s anoCar2.chr6 55335594 2 + 80741955 TT i anoCar2.chr6 I 3 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=18102.000000 s mm10.chrUn_GL456366 1759 58 + 47073 CTTCCACATGTTA---TCTTTTTTGTGCAGTTTTGAATTTTA---TTGATAATTAATATGCTAC s rn5.chr7 143062329 61 + 143501887 CTTCCACATGTTAACTTCTTTTTTCTTCAACTTTGAATTTTA---TTGATAATTAATAAGCTAC i rn5.chr7 C 0 C 0 s echTel1.scaffold_312291 3022 62 + 42248 CTTCCTTAAGTTAA--CTTTTTTCATAAAAATTTTCACTTTATGTTTCAACAGAAATGTGTTAC i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1957612 59 + 2798521 GTTCcatatatta---attttttggtacaactttcaattttc--ttttaacataAAATTGTGAC i sarHar1.chr2_GL841571_random I 3 C 0 s anoCar2.chr6 55335596 62 + 80741955 TTTCCATATGTTAA--GTTTTTAGGTAAAACTTTCAATTTTATCTTTTAACATAAATatgttac i anoCar2.chr6 C 0 I 428 e macEug2.GL138109 11406 182 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=8941.000000 s mm10.chrUn_GL456366 1817 45 + 47073 CACTTCTTTAATGAAACAACAAGCTTAAATCA---AGtttttttaaaa s rn5.chr7 143062390 45 + 143501887 AACTTCTTCCTTGAAGTGACAAAGTTAAATCA---AAAGTTTTAAAAA i rn5.chr7 C 0 I 265 s echTel1.scaffold_312291 3084 45 + 42248 ACAGTTTTTC--GAAGCAACATGTTTAAATCA-CTGAATTTTTGAAAA i echTel1.scaffold_312291 C 0 I 1 s sarHar1.chr2_GL841571_random 1957671 48 + 2798521 AATTTTTTCCTTGAAGCTACATGTTTAAatcatttagctttttaaaaa i sarHar1.chr2_GL841571_random C 0 C 0 e macEug2.GL138109 11406 182 - 26650 I e anoCar2.chr6 55335658 428 + 80741955 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=302.000000 s mm10.chrUn_GL456366 1862 6 + 47073 gattta s echTel1.scaffold_312291 3130 6 + 42248 AACTTA i echTel1.scaffold_312291 I 1 I 732 e macEug2.GL138109 11406 182 - 26650 I e anoCar2.chr6 55335658 428 + 80741955 I e sarHar1.chr2_GL841571_random 1957719 0 + 2798521 C e micMur1.scaffold_16960 4681 163 + 14372 I e rn5.chr7 143062435 265 + 143501887 I a score=0.000000 s mm10.chrUn_GL456366 1868 38 + 47073 tttattattgtagctaagtacattgaatctgtcttcag e macEug2.GL138109 11406 182 - 26650 I e anoCar2.chr6 55335658 428 + 80741955 I e echTel1.scaffold_312291 3136 732 + 42248 I e sarHar1.chr2_GL841571_random 1957719 0 + 2798521 C e micMur1.scaffold_16960 4681 163 + 14372 I e rn5.chr7 143062435 265 + 143501887 I a score=-4288.000000 s mm10.chrUn_GL456366 1906 649 + 47073 atgcaccagaagagcttgtgagatcaccttacagatggttgtgagccaccatgtggttgctgggattttaactc-----agg-------accttcaga-agagtaattagtgct-gtcaactgctgaatcatctctccagccccAAATCATCAAGTTTT----AAAAAAAGTCTGGCAAGACACTTTTTTTTTTTTTTGGCTATCATTCATAATTTATTTTTTCCACTGTTGAACGTTTTCTCTTTCTATTGGGTTTTTCATAAGTCAGTTCACAAGTGAACATAAAGCCAAACAT-------TACAGAA----GGATACAAAATCTACCACTTAACTAATGTACTGCA------------AATAAAACATAAGATACATAAATGTGCATATGTGCCTATGTATGACTGGTGACTTGAATTACCCT-----------CATCTACATGTATTATTAAAGTCCATAATGTTATTTTAATG---CTAGA---GAATTTTTGACATAtttttattagttattttcttcatttacatttcaaatgctaacccaaaagtcccctatacacccctgccctgcttccctacccacttactcccac-----ttcttggccctggctttctcttgtactggggcatacaaagtttgctagaccaagg-----------gacctctctt----------cccaatgatggtgaactag-----gctatcttatgctaaatatgcagata s sarHar1.chr2_GL841804_random 1347 663 - 41481 CTCAGTCAAAAATACA-GCAACTTCatctttcaatt---------tcaaaat----ttgCTTAAATTTCACCTTCTTGAAAGCCATTTTACCTCTACATATAGTAATAAGTGTTTGTTATCAG--AGTTCATGTCT-----------TTGCaaagttttgagaaaaaaaaaacagttaatgtCATGGCTTCTGTTTCTGgacttactttaaaattttttt------------aataatttttttttatttt---------------caatatacatgccaacatagttttcaacattcatctctgcaaaaccctgtcttccaaatttttctccctccctttccactgCACCCTCCCTAGgcagcaagcaatacaatatgtAA--GGGCATGAATGTTAATGAA--GTTAATTATTTGGATAGTATTGAGAAACAAAACAtctttgtggggtttttttgacTATGAAAGTCTCCCAACGGCCCTTGATGTGAATAAAAGTGATATGTTCATTATCACCAGCTTTAATTTTTGCTCCAAATCC--------AAGATTCTTCCCCATCATTGCTCTAGCACAGTCTGTACAGACTCCAATGCAATTTTTCCACTATAAACCtttttt---------tGTGAAAAATTTATCAATTTCAGATGCATATCTTAAACCTCTCTTGTGTGTCCTTCCAAAGGGTGACAAAACAGTAATTGCTCATGTATGCTTTCTTCATAAACA i sarHar1.chr2_GL841804_random n 0 n 0 e macEug2.GL138109 11406 182 - 26650 I e anoCar2.chr6 55335658 428 + 80741955 I e echTel1.scaffold_312291 3136 732 + 42248 I e micMur1.scaffold_16960 4681 163 + 14372 I e rn5.chr7 143062435 265 + 143501887 I a score=0.000000 s mm10.chrUn_GL456366 2555 24 + 47073 gagacacgagttctgggggtactg e macEug2.GL138109 11406 182 - 26650 I e anoCar2.chr6 55335658 428 + 80741955 I e echTel1.scaffold_312291 3136 732 + 42248 I e sarHar1.chr2_GL841804_random 2010 0 - 41481 n e micMur1.scaffold_16960 4681 163 + 14372 I e rn5.chr7 143062435 265 + 143501887 I a score=116.000000 s mm10.chrUn_GL456366 2579 6 + 47073 attagt s sarHar1.chr2_GL841571_random 1957719 6 + 2798521 ataact i sarHar1.chr2_GL841571_random C 0 C 0 e macEug2.GL138109 11406 182 - 26650 I e anoCar2.chr6 55335658 428 + 80741955 I e echTel1.scaffold_312291 3136 732 + 42248 I e micMur1.scaffold_16960 4681 163 + 14372 I e rn5.chr7 143062435 265 + 143501887 I a score=1204.000000 s mm10.chrUn_GL456366 2585 10 + 47073 GGCAAGACAC s rn5.chr7 143062700 10 + 143501887 GGCAAAACAC i rn5.chr7 I 265 C 0 s sarHar1.chr2_GL841571_random 1957725 10 + 2798521 gacaACAAAA i sarHar1.chr2_GL841571_random C 0 C 0 e macEug2.GL138109 11406 182 - 26650 I e anoCar2.chr6 55335658 428 + 80741955 I e echTel1.scaffold_312291 3136 732 + 42248 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-871.000000 s mm10.chrUn_GL456366 2595 8 + 47073 -TTTT---TGAT s rn5.chr7 143062710 9 + 143501887 -TTTG--ATGAT i rn5.chr7 C 0 C 0 s echTel1.scaffold_279603 393 8 + 51565 -TTTT---TAAA i echTel1.scaffold_279603 n 732 C 0 s sarHar1.chr2_GL841571_random 1957735 12 + 2798521 CTTTGAAAGCAT i sarHar1.chr2_GL841571_random C 0 C 0 e macEug2.GL138109 11406 182 - 26650 I e anoCar2.chr6 55335658 428 + 80741955 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=7632.000000 s mm10.chrUn_GL456366 2603 43 + 47073 GTT-------ATTATG-AAAAAATA----ATCATAGGGGATTCTGTTTAGTTAAA s rn5.chr7 143062719 42 + 143501887 GTT-------ATTATG-AAAAAATA-----TCAGATGACATTCTATTTAGTTAAA i rn5.chr7 C 0 C 0 s echTel1.scaffold_279603 401 49 + 51565 GTTATAAATCATTATGAAAAAAATAGA--AGCATAT----TTTTACTTAGTCAAA i echTel1.scaffold_279603 C 0 C 0 s sarHar1.chr2_GL841571_random 1957747 46 + 2798521 Gtc-------attatgaaaaatattaa--caCAATTGGACTTCTGATCAGTAAAA i sarHar1.chr2_GL841571_random C 0 I 5 s anoCar2.chr6 55336086 47 + 80741955 gtc-------attttg-aaaaaaaaaattaacaatcaGATTTTTGCTTAATTGAA i anoCar2.chr6 I 428 C 0 e macEug2.GL138109 11406 182 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-8534.000000 s mm10.chrUn_GL456366 2646 2 + 47073 G-----G- s rn5.chr7 143062761 3 + 143501887 A----TA- i rn5.chr7 C 0 C 0 s echTel1.scaffold_279603 450 4 + 51565 AA---TA- i echTel1.scaffold_279603 C 0 C 0 s sarHar1.chr2_GL841571_random 1957798 1 + 2798521 A------- i sarHar1.chr2_GL841571_random I 5 C 0 s macEug2.GL138109 11588 1 - 26650 A------- i macEug2.GL138109 I 182 I 19 s anoCar2.chr6 55336133 7 + 80741955 -AATATAG i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=1260.000000 s mm10.chrUn_GL456366 2648 11 + 47073 TAACTTCCTTG s rn5.chr7 143062764 11 + 143501887 TAACTTTCTCA i rn5.chr7 C 0 C 0 s echTel1.scaffold_279603 454 11 + 51565 TGATTCGCCTT i echTel1.scaffold_279603 C 0 I 4 s sarHar1.chr2_GL841571_random 1957799 11 + 2798521 CAACTTCATCT i sarHar1.chr2_GL841571_random C 0 I 6 s anoCar2.chr6 55336140 11 + 80741955 TATCTTTCAAT i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 11589 19 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=5678.000000 s mm10.chrUn_GL456366 2659 6 + 47073 TTCAGG s rn5.chr7 143062775 6 + 143501887 TTCAGT i rn5.chr7 C 0 C 0 s sorAra1.scaffold_185048 3687 6 - 29306 TTCAAT i sorAra1.scaffold_185048 N 0 C 0 s echTel1.scaffold_279603 469 6 + 51565 TTTAAT i echTel1.scaffold_279603 I 4 C 0 s sarHar1.chr2_GL841571_random 1957816 6 + 2798521 TTCAAT i sarHar1.chr2_GL841571_random I 6 I 2 s anoCar2.chr6 55336151 6 + 80741955 TTCAAT i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 11589 19 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-18.000000 s mm10.chrUn_GL456366 2665 2 + 47073 AT s rn5.chr7 143062781 2 + 143501887 AC i rn5.chr7 C 0 C 0 s sorAra1.scaffold_185048 3693 2 - 29306 AA i sorAra1.scaffold_185048 C 0 C 0 s echTel1.scaffold_279603 475 2 + 51565 AA i echTel1.scaffold_279603 C 0 C 0 s macEug2.GL138109 11608 1 - 26650 -T i macEug2.GL138109 I 19 I 129 s anoCar2.chr6 55336157 2 + 80741955 AA i anoCar2.chr6 C 0 C 0 e sarHar1.chr2_GL841571_random 1957822 2 + 2798521 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=58685.000000 s mm10.chrUn_GL456366 2667 110 + 47073 TCTGTCTACATTTTGTGCTCTCAATAG-GCACTTGGTCTC---TG----TGAT---AA-------T---CTCTTGTAACTGAGGTCCAGGTCTCTTCAAAGGCTTGAAGGCAAATGGCTGTGAAGAGCACA s rn5.chr7 143062783 110 + 143501887 TCTGTTTAGACCTTGTGCTCTCAATAG-GCACTTGGATTC---TG----TGGT---GA-------T---CTCTTATGACTGAGGTCCAGGTCTTTGCAAAGTTTTGAAGGCAAATGGCTGTAAAGGGCACA i rn5.chr7 C 0 C 0 s sorAra1.scaffold_185048 3695 114 - 29306 TCTGCTTAAATTCTGCCCTCTCCATAGCCCATTTATTGCA---TG----TAGTAAAAA-------G---CTTTTGTAATCAAAGTCCATGTATTTGCAATGACTTGAAGACAAATGGCTATTATGGGCACA i sorAra1.scaffold_185048 C 0 C 0 s echTel1.scaffold_279603 477 121 + 51565 TCTGTCTAAACATTGCCCTCTTGAGAG-CCACCTGACCTC---TGGGTATAGT---AATAAACTTT---TTTTTGTAAACTGAGTCCATGTCTTTGCAAAGGTTTGAACGCAAGTGACTGTTAAGGGTGCA i echTel1.scaffold_279603 C 0 I 1049 s sarHar1.chr2_GL841571_random 1957824 114 + 2798521 TCTGTTTAAATTTTACTCTCTTCAGAG-CCACCTTACTCTGCATG----TAGT---AA-------T--AAGTTTGTAACTGGAGTCCATGTTGTTACAAAGGTTTGAAAACAAATGACTGTTAGGGGTTTA i sarHar1.chr2_GL841571_random I 2 C 0 s anoCar2.chr6 55336159 116 + 80741955 -TTGGTTTCAACTTGCCCTCTTGAGAG-CCACCTTACTTC---TGCATGTAGT---AA-------TAAACTTTTGTAACTATAGTCCATGTTTTTGCAAAACTTTGAAAAGAAATTACTACTAAAAGCATG i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 11609 129 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-2844.000000 s mm10.chrUn_GL456366 2777 2 + 47073 TT s rn5.chr7 143062893 2 + 143501887 GC i rn5.chr7 C 0 C 0 s sorAra1.scaffold_185048 3809 2 - 29306 TT i sorAra1.scaffold_185048 C 0 N 0 s sarHar1.chr2_GL841571_random 1957938 1 + 2798521 G- i sarHar1.chr2_GL841571_random C 0 C 0 s anoCar2.chr6 55336275 1 + 80741955 G- i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 11609 129 - 26650 I e echTel1.scaffold_279603 598 1049 + 51565 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-311.000000 s mm10.chrUn_GL456366 2779 4 + 47073 CCTC- s rn5.chr7 143062895 4 + 143501887 ACTC- i rn5.chr7 C 0 C 0 s sarHar1.chr2_GL841571_random 1957939 3 + 2798521 -CTT- i sarHar1.chr2_GL841571_random C 0 I 1 s anoCar2.chr6 55336276 4 + 80741955 -CTTT i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 11609 129 - 26650 I e echTel1.scaffold_279603 598 1049 + 51565 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-3276.000000 s mm10.chrUn_GL456366 2783 12 + 47073 CTGGGAAGT------------------ACC s rn5.chr7 143062899 12 + 143501887 CTGGGAAGC------------------ACA i rn5.chr7 C 0 C 0 s sarHar1.chr2_GL841571_random 1957943 9 + 2798521 TAATGAAGT--------------------- i sarHar1.chr2_GL841571_random I 1 C 0 s macEug2.GL138109 11738 27 - 26650 TAATGAAGTTAATGATTAGGATAGAAT--- i macEug2.GL138109 I 129 I 31 s anoCar2.chr6 55336280 12 + 80741955 TAATAAAGT------------------TCC i anoCar2.chr6 C 0 C 0 e echTel1.scaffold_279603 598 1049 + 51565 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-1988.000000 s mm10.chrUn_GL456366 2795 5 + 47073 -TGTGA s rn5.chr7 143062911 5 + 143501887 -TGTGA i rn5.chr7 C 0 C 0 s sarHar1.chr2_GL841571_random 1957952 3 + 2798521 ---TAa i sarHar1.chr2_GL841571_random C 0 C 0 s anoCar2.chr6 55336292 5 + 80741955 TCCTC- i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 11765 31 - 26650 I e echTel1.scaffold_279603 598 1049 + 51565 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-7290.000000 s mm10.chrUn_GL456366 2800 3 + 47073 T---------GG s rn5.chr7 143062916 12 + 143501887 TTCTGATGATGC i rn5.chr7 C 0 C 0 s sarHar1.chr2_GL841571_random 1957955 3 + 2798521 ------tga--- i sarHar1.chr2_GL841571_random C 0 C 0 s macEug2.GL138109 11796 1 - 26650 ------t----- i macEug2.GL138109 I 31 I 29 s anoCar2.chr6 55336297 3 + 80741955 --TTG------- i anoCar2.chr6 C 0 C 0 e echTel1.scaffold_279603 598 1049 + 51565 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=261.000000 s mm10.chrUn_GL456366 2803 5 + 47073 TTTTG- s rn5.chr7 143062928 5 + 143501887 TTCTG- i rn5.chr7 C 0 C 0 s sarHar1.chr2_GL841571_random 1957958 5 + 2798521 ttttg- i sarHar1.chr2_GL841571_random C 0 I 951 s anoCar2.chr6 55336300 5 + 80741955 -TGTGG i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 11797 29 - 26650 I e echTel1.scaffold_279603 598 1049 + 51565 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=448.000000 s mm10.chrUn_GL456366 2808 5 + 47073 ACTGT s rn5.chr7 143062933 5 + 143501887 GCTGT i rn5.chr7 C 0 C 0 s anoCar2.chr6 55336305 5 + 80741955 CCTTT i anoCar2.chr6 C 0 I 220 e macEug2.GL138109 11797 29 - 26650 I e echTel1.scaffold_279603 598 1049 + 51565 I e sarHar1.chr2_GL841571_random 1957963 951 + 2798521 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=1606.000000 s mm10.chrUn_GL456366 2813 18 + 47073 AAGTGCCTGTGGGTGGGT s rn5.chr7 143062938 18 + 143501887 AAGTGCCTGTGGATGGGT i rn5.chr7 C 0 C 0 e macEug2.GL138109 11797 29 - 26650 I e anoCar2.chr6 55336310 220 + 80741955 I e echTel1.scaffold_279603 598 1049 + 51565 I e sarHar1.chr2_GL841571_random 1957963 951 + 2798521 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=600.000000 s mm10.chrUn_GL456366 2831 1 + 47073 C s rn5.chr7 143062956 1 + 143501887 C i rn5.chr7 C 0 C 0 s echTel1.scaffold_279603 1647 1 + 51565 C i echTel1.scaffold_279603 I 1049 C 0 s anoCar2.chr6 55336530 1 + 80741955 C i anoCar2.chr6 I 220 C 0 e macEug2.GL138109 11797 29 - 26650 I e sarHar1.chr2_GL841571_random 1957963 951 + 2798521 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=755.000000 s mm10.chrUn_GL456366 2832 1 + 47073 A s rn5.chr7 143062957 1 + 143501887 A i rn5.chr7 C 0 C 0 s echTel1.scaffold_279603 1648 1 + 51565 A i echTel1.scaffold_279603 C 0 C 0 s sarHar1.chr2_GL841571_random 1958914 1 + 2798521 A i sarHar1.chr2_GL841571_random I 951 C 0 s macEug2.GL138109 11826 1 - 26650 g i macEug2.GL138109 I 29 I 579 s anoCar2.chr6 55336531 1 + 80741955 A i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=4660.000000 s mm10.chrUn_GL456366 2833 18 + 47073 GCAGTGAAGAAAAGGGAA s rn5.chr7 143062958 18 + 143501887 GCAGTGAAGAAAAGGGAA i rn5.chr7 C 0 C 0 s echTel1.scaffold_279603 1649 16 + 51565 GCAGGTAACAAAAGAT-- i echTel1.scaffold_279603 C 0 n 0 s sarHar1.chr2_GL841571_random 1958915 18 + 2798521 GCAGGTAACATAAGGTCT i sarHar1.chr2_GL841571_random C 0 C 0 s anoCar2.chr6 55336532 18 + 80741955 GCATGTAACACAAGATCT i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 11827 579 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=42130.000000 s mm10.chrUn_GL456366 2851 98 + 47073 CCTGTCACATAGGACATTTTAATATTTGCAATTAAGTAA----TTTTGTAGTATTCAAGTAATGATT--------------TTT-GTTGATGG-----------------------TGACAAATTTCTCTAAAA-----GTTTTT---- s rn5.chr7 143062976 101 + 143501887 ACTATCATATAGGGCATTTTAGTTTTTGGAATTAAGTAAGTGGTTTTGTAATATTCAAGTAATGATT--------------TTT-ATTGATGG-----------------------CGACAAATTTCTCTACAA------CCTTT---- i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71414 96 - 168694 CTTATCATGTGATACTGTTTAGTTTTTGCAATCAAATAC---ATTTCCTAAGATGTACATAAGTACC--------------TTC-CATGACAA-----------------------Taacaaatttctc---at-----tttttt---- i sorAra1.scaffold_238037 N 0 C 0 s echTel1.scaffold_312291 3868 108 + 42248 CCTATCATGTAGGGCTTTCTAGTTTTTGCAATTAAGTAAGAAGTTTCTTAAGATGCAAGTAAATACT--------------TTTGGTTGACAA-----------------------TAACAAATGGTTCAAAACAGTGTTTTTCT---- i echTel1.scaffold_312291 I 732 C 0 s sarHar1.chr2_GL841571_random 1958933 136 + 2798521 TTTATTATGTAgggctttaaaatttttacaattaAATAA---GTTTCAAAAGATGCAAGTAAATAATGCAACTAAATATTACTT-ATTGACAAACAACTAAATACTACTTATTGACAAacaaatttctcaaaat-----attgtt---- i sarHar1.chr2_GL841571_random C 0 C 0 s anoCar2.chr6 55336550 107 + 80741955 TCTGTCACATAGGGCTTTGGAGTTTTTGTAATTAAATAAGAAGTTTTGTAGGGTGCAAGTAAATAAT--------------TTTCACTGACAG-----------------------TAACagatttttcaaaac-----attgttttct i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 11827 579 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=3090.000000 s mm10.chrUn_GL456366 2949 2 + 47073 TT s rn5.chr7 143063077 2 + 143501887 TC i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71510 2 - 168694 tt i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 3976 2 + 42248 TT i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959069 2 + 2798521 tt i sarHar1.chr2_GL841571_random C 0 I 5 s macEug2.GL138109 12406 2 - 26650 TT i macEug2.GL138109 I 579 I 37 s anoCar2.chr6 55336657 2 + 80741955 tt i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=13707.000000 s mm10.chrUn_GL456366 2951 31 + 47073 ATATGAAACATTTATAAGTTCTTAACAATAT s rn5.chr7 143063079 31 + 143501887 ATATGAAAAATTTACAAGTTCCTCGGAATAT i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71512 25 - 168694 atttg------ttaagaaTCATTCAGattgt i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 3978 31 + 42248 ATTTGAAGATTTTAAAACTCAATCAAAATAT i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959076 31 + 2798521 atttgaagatttaaaaagtatttcaaaatat i sarHar1.chr2_GL841571_random I 5 C 0 s anoCar2.chr6 55336659 31 + 80741955 atttaaagattttaaaagtcATTTGAATGAT i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 12408 37 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-308.000000 s mm10.chrUn_GL456366 2982 1 + 47073 C s rn5.chr7 143063110 1 + 143501887 C i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71537 1 - 168694 t i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4009 1 + 42248 G i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959107 1 + 2798521 t i sarHar1.chr2_GL841571_random C 0 I 1 s macEug2.GL138109 12445 1 - 26650 T i macEug2.GL138109 I 37 I 44 s anoCar2.chr6 55336690 1 + 80741955 T i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=-1560.000000 s mm10.chrUn_GL456366 2983 40 + 47073 -CTCTGTTTT---------TGTTGTGGCACACAGCATTCTC---ATATGATGT s rn5.chr7 143063111 43 + 143501887 -CTCTGGGTT---------TGCTATGACACATGGTATTCTCTGAATGACAATT i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71538 34 - 168694 -ccttttatt---------tgttGCT-TGCTTAGTAT--------TAAGGTGT i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4010 34 + 42248 -CCTTGGGGT---------TATTGCA-TGCTTGATAG--------TAAGCTGT i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959109 41 + 2798521 -ctttgatttagAACAGTATACTGCA-TGATTGCTAC--------TAAGAT-- i sarHar1.chr2_GL841571_random I 1 C 0 s anoCar2.chr6 55336691 44 + 80741955 CCTTTGGTTTATTGCAATACACTGCA-TGCTTGGTAT--------TAAGATGT i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 12446 44 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=1421.000000 s mm10.chrUn_GL456366 3023 3 + 47073 TGT s rn5.chr7 143063154 3 + 143501887 TTT i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71572 3 - 168694 CAC i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4044 3 + 42248 CGT i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959150 3 + 2798521 TGT i sarHar1.chr2_GL841571_random C 0 C 0 s macEug2.GL138109 12490 3 - 26650 CAT i macEug2.GL138109 I 44 I 112 s anoCar2.chr6 55336735 3 + 80741955 CGT i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=58238.000000 s mm10.chrUn_GL456366 3026 113 + 47073 -TTTTGTTTGGCTGGTTTTATGATTGATACAACCAAAACTTCAATACAAACTAAGCAAGGAGGTTTT-GTTTATAGTCATGATTGTTAGAAGTAAACACATTCTGCTGAA--TAATG s rn5.chr7 143063157 114 + 143501887 -TTTTGCATGGCTGGTTTTATGATTGATACAATCAAAACTTCAATTCAAACTAAGCGAGGAGGTTCT-GTTTATAGTAACGATTGTTACAAGTAAATACATTCTGTTGAAA-CAATC i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71575 113 - 168694 -TTATGTTTGACAGATTTTTTGCTTTCCACAACCAAGACTTCATTGCAAATTAAGTAAATACAGTTT-TTGCACTATCATGATTATTAGAGGTAAATCCATATTGCAAAA--tgatt i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4047 114 + 42248 -TTTGGTTTGGCTGGTTTCATGCTCTCCCAAGCCCAAACTGCCTTACGGATGAAGTAAAGACATTTTCCTACACCATCGTCACGATTAGAAGTAAATCCATGTACAAAGA--CGTTT i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959153 108 + 2798521 -CATTTTATGGCTGGTTTC--------TGCAACCAAGAATTCATTACAAATTAGGCAAAAAGATTTTCTcacactatcatcattattagaaGTAAATTCATATTGCAAAAAGtgatt i sarHar1.chr2_GL841571_random C 0 I 2 s anoCar2.chr6 55336738 115 + 80741955 TTTTAATTTGGCTGGTTTTATGCTCTCCACAGCCAAAGCttcattacaaattaagcagaggTTTTTC-CCATACCATCTTGATTATTGGAAGTAAATCCATATTGCAAAAA-TGATT i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 12493 112 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-3193.000000 s mm10.chrUn_GL456366 3139 1 + 47073 -A s rn5.chr7 143063271 1 + 143501887 -A i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71688 1 - 168694 -c i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4161 1 + 42248 -T i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959263 1 + 2798521 -a i sarHar1.chr2_GL841571_random I 2 C 0 s macEug2.GL138109 12605 1 - 26650 -A i macEug2.GL138109 I 112 I 28 s anoCar2.chr6 55336853 1 + 80741955 c- i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=9872.000000 s mm10.chrUn_GL456366 3140 23 + 47073 AACCTATCT--CTTTTCCTGTCAGT s rn5.chr7 143063272 23 + 143501887 AATATTTTT--CTTTCCCTGTTGCC i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71689 25 - 168694 aatatattttctttttcctgtcaaT i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4162 25 + 42248 GGCATATTGTCTTCTTCTCATCAAT i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959264 22 + 2798521 aatcttttt---tttttttatcaat i sarHar1.chr2_GL841571_random C 0 C 0 s anoCar2.chr6 55336854 24 + 80741955 aacatattt-ctttttcttgtcaAT i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 12606 28 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=5916.000000 s mm10.chrUn_GL456366 3163 9 + 47073 CTGGGTGAG s rn5.chr7 143063295 9 + 143501887 CTGGGTATG i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71714 9 - 168694 TTAGGCATA i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4187 9 + 42248 TTAGGTGTA i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959286 9 + 2798521 ttgtaTGTT i sarHar1.chr2_GL841571_random C 0 C 0 s macEug2.GL138109 12634 9 - 26650 TTACGTGTA i macEug2.GL138109 I 28 I 29 s anoCar2.chr6 55336878 9 + 80741955 TTAAGTGTA i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=-81.000000 s mm10.chrUn_GL456366 3172 23 + 47073 CTGCAGCCT-GTGGTACAGACGC--T s rn5.chr7 143063304 7 + 143501887 CTGCAGC------------------- i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71723 25 - 168694 CTGGACCCT-GTAGCAAACATTATGT i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4196 26 + 42248 CTGCAATCTGGTACTGAAGACTCTGA i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959295 24 + 2798521 CTAAAACCTGGTAGTGAAGATTCT-- i sarHar1.chr2_GL841571_random C 0 I 6 s anoCar2.chr6 55336887 24 + 80741955 CTGCAACCTGGTAGTGAATACTCT-- i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 12643 29 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-1660.000000 s mm10.chrUn_GL456366 3195 1 + 47073 -T s sorAra1.scaffold_238037 71748 1 - 168694 -T i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4222 1 + 42248 -C i echTel1.scaffold_312291 C 0 C 0 s macEug2.GL138109 12672 1 - 26650 -T i macEug2.GL138109 I 29 I 8 s anoCar2.chr6 55336911 1 + 80741955 G- i anoCar2.chr6 C 0 C 0 e sarHar1.chr2_GL841571_random 1959319 6 + 2798521 I e micMur1.scaffold_16960 4681 163 + 14372 I e rn5.chr7 143063311 0 + 143501887 C a score=-596.000000 s mm10.chrUn_GL456366 3196 8 + 47073 -----TCATTGTC s rn5.chr7 143063311 4 + 143501887 ---------TGTC i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71749 8 - 168694 -----TTATTGTA i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4223 7 + 42248 -----ACATTG-C i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959325 8 + 2798521 -----TCGTTATC i sarHar1.chr2_GL841571_random I 6 C 0 s anoCar2.chr6 55336912 13 + 80741955 CCACATTGTTATC i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 12673 8 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=-5553.000000 s mm10.chrUn_GL456366 3204 10 + 47073 AGTGGTGC-------TC s rn5.chr7 143063315 10 + 143501887 AGAGGAGC-------TC i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71757 17 - 168694 ATCAGGATTTTGCCATC i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4230 17 + 42248 ATGAGTATTTTTACCTC i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959333 10 + 2798521 ---AGTATTTTTA---- i sarHar1.chr2_GL841571_random C 0 I 4 s macEug2.GL138109 12681 10 - 26650 ---CATATTTCTA---- i macEug2.GL138109 I 8 I 13 s anoCar2.chr6 55336925 14 + 80741955 ---AGTAtttttacctc i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=4881.000000 s mm10.chrUn_GL456366 3214 9 + 47073 TTCTGTTTA s rn5.chr7 143063325 9 + 143501887 ATCTGTTTA i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71774 9 - 168694 ATCTGTATA i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4247 9 + 42248 TTCTGTCTT i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959347 9 + 2798521 TTTTGCATA i sarHar1.chr2_GL841571_random I 4 C 0 s anoCar2.chr6 55336939 9 + 80741955 ttttttcta i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 12691 13 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=4193.000000 s mm10.chrUn_GL456366 3223 7 + 47073 AATTCTA s rn5.chr7 143063334 7 + 143501887 AATTCTA i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71783 6 - 168694 AATTGT- i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4256 7 + 42248 AATTTAG i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959356 7 + 2798521 AATCTAA i sarHar1.chr2_GL841571_random C 0 C 0 s macEug2.GL138109 12704 7 - 26650 AATTTTG i macEug2.GL138109 I 13 I 21 s anoCar2.chr6 55336948 7 + 80741955 aatttta i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=-3744.000000 s mm10.chrUn_GL456366 3230 20 + 47073 TCACTTGGCCAGAACC-AAAA s rn5.chr7 143063341 20 + 143501887 TCACTTGGCCAGAACC-AAAA i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71789 17 - 168694 TTACTTACTCATAAC----AT i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4263 21 + 42248 CTACTTATTCATAACTGAAAA i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959363 17 + 2798521 --CCCTATCCataact-aat- i sarHar1.chr2_GL841571_random C 0 C 0 s anoCar2.chr6 55336955 10 + 80741955 -tccaaactca---------- i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 12711 21 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=3193.000000 s mm10.chrUn_GL456366 3250 6 + 47073 ATATCT s rn5.chr7 143063361 6 + 143501887 ATAATT i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71806 6 - 168694 ACTTTT i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4284 6 + 42248 ATATTC i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959380 3 + 2798521 ---ttt i sarHar1.chr2_GL841571_random C 0 I 2 s macEug2.GL138109 12732 6 - 26650 ATATTT i macEug2.GL138109 I 21 I 89 s anoCar2.chr6 55336965 6 + 80741955 cttttt i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=10804.000000 s mm10.chrUn_GL456366 3256 32 + 47073 TGTCATAAAATCT----------AAATAAATTCTCCAGAAAA s rn5.chr7 143063367 32 + 143501887 TGTCATAAAATAT----------AAATAAATTCTTAAGAAAA i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71812 41 - 168694 Tgttctaaaatattaatatta-aaaataatttctcaaattaA i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4290 41 + 42248 AGTTCTGAAACATAAGTATTG-ATAGTAATTTCTCAAATGAA i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959385 42 + 2798521 tgttttaataaataaatattgtttattaatttcttaaataaa i sarHar1.chr2_GL841571_random I 2 C 0 s anoCar2.chr6 55336971 32 + 80741955 tgtccaaaaatat----------aaataaatattgtaaataa i anoCar2.chr6 C 0 I 360 e macEug2.GL138109 12738 89 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=8852.000000 s mm10.chrUn_GL456366 3288 41 + 47073 CACCATCCTGAAATTACAA--AATTAC--ATTTGTACTTAATTTT s rn5.chr7 143063399 41 + 143501887 CACCATCCCAAAATTATGA--AAGTAC--ATTTGTGCTTAATTTT i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71853 40 - 168694 TATTAGCTTTCTCTTATGA--GATGAC---TTTATACTTAATTCT i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4331 38 + 42248 TACTCACT-----TTGTGA--AATGACGTGCTTGTGCTTAATTAA i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959427 42 + 2798521 tactAGATTTAGTTTATGCCTAATTTG---TTTAcacttacttta i sarHar1.chr2_GL841571_random C 0 C 0 s anoCar2.chr6 55337363 40 + 80741955 taccttacttagtttatta--catttg---tttgtgcttaattta i anoCar2.chr6 I 360 C 0 e macEug2.GL138109 12738 89 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=1911.000000 s mm10.chrUn_GL456366 3329 1 + 47073 A s rn5.chr7 143063440 1 + 143501887 A i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71893 1 - 168694 A i sorAra1.scaffold_238037 C 0 C 0 s echTel1.scaffold_312291 4369 1 + 42248 A i echTel1.scaffold_312291 C 0 C 0 s sarHar1.chr2_GL841571_random 1959469 1 + 2798521 a i sarHar1.chr2_GL841571_random C 0 I 3 s macEug2.GL138109 12827 1 - 26650 A i macEug2.GL138109 I 89 I 471 s anoCar2.chr6 55337403 1 + 80741955 a i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=53988.000000 s mm10.chrUn_GL456366 3330 139 + 47073 AAG----------TTGA-CTCCATACT----------------------------------TAT-GTGTACA------------------------------------GATGATTGAGAAATATTGTTATGTAGTTTTAATCTTAATTTTTATTTGTTTTAATTGAACACTTATATTTC----CGTAGAACAAGAAGATaacagaaatatctaaatttggata-tt s rn5.chr7 143063441 140 + 143501887 AAG----------TTGA-ATCCACACT----------------------------------TAT-GTGTACA------------------------------------GATGATTGAGAAATATTGTTACAGAGTCTTAATCTTGGCTTTTACTTGCTATGATTGAACCCATAGATTTC----TGTAGCACAAGGAGATaacagaaatatctaaattcaggtagtt i rn5.chr7 C 0 C 0 s sorAra1.scaffold_238037 71894 139 - 168694 AAAA--------TTGGT-GTTCACACT----------------------------------TCCAATACAAT------------------------------------AGTGATgatgaagtatttttaaagagCCTTTGTCTTG-------CTTGCTGCAGATAAGCACTTAGGTTCCTAAATGTAAAAGAATGAGttaatggtaatttttaaaataaaaca-tt i sorAra1.scaffold_238037 C 0 N 0 s echTel1.scaffold_312291 4370 140 + 42248 AAA----------TTGATGTTTATACT----------------------------------TAC-ATACATA---------------------------CACAGTAGTGATGGCGGAGAAATATTATCAAAGGGTTTTTGTCTT------TACTTGCTGCAATTAGATACTTATGGTTC----TGTCA---AAGAAGATAGCAGAGATTTTTAAGATCAAGTA-TT i echTel1.scaffold_312291 C 0 I 3 s sarHar1.chr2_GL841571_random 1959473 203 + 2798521 aac----------ttat-attcacactgctctctctctctctctctctctctatatatatatat-atatatatcacacacacatatacacacacacacacagagtagtgatgatggaaaaatattattaaagagcTTTTGTCTT------TACTTGCTACAATTAAACACTGATATTTC----TGTAAAAGAAGGAGATaatggtaattttaaaaatcaaaca-tt i sarHar1.chr2_GL841571_random I 3 I 3 s anoCar2.chr6 55337404 149 + 80741955 aagaaaaaaaccctgat-gTTCATACT----------------------------------TGC-ATAAACA------------------------------AACGGTAGTGATGGTGAACTATTATTAAAAGGCTTTTGTCTT------TACTTGCTGTAATTAAACACTTACATTTC----TGTAAAAGACAGAGGTAacagcaatttttaaaatcaaaaa-tt i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 12828 471 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=105996.000000 s mm10.chrUn_GL456366 3469 300 + 47073 ---acagagtgccatccacacatagacatatttgatatttacatgtcaatgaatgacagtgggaaaata------------gttttctataattaagtcattatgttttcattggacatttcactggaacatttgtacacacagcaaa-acactgaag---------tttagcagtctccaatctgagccaaggta-ttcagatagcatttgcaggtgttgagtgacaggttggtgtgctcagtactaagtgtacaggttttgtatttag-agccaaggccacaggaaggtttcctgattcaatacctttgactgctgccagaaaca s rn5.chr7 143063581 304 + 143501887 ---acacagtgccatccacacatacacaaatttgatatttacatgccaacgaatgacagt-ggaaaata------------gttttctgtaattaagtcatcatgttttcataaga------acaggaacgtttgtatgcacagcaaacacactgtagttaagagcatttggcagtctccaatctgagccaaggca-ttcaaacagcacttgcaggcgttgtgtgacaggttggtgtgctcagcactaagtgtacaggtcgtgtatttagaagccaaggccacggggaggtttattgattcaacacctttgactgctgccagaaaca i rn5.chr7 C 0 C 0 s echTel1.scaffold_312291 4513 314 + 42248 ---ACACAATACAG---GCAAAGAGATTAATTGGAGATATACAACCTGAGGATTGATGGCAGAAAAATATTAAACGTCTTTATTTTCAGTAATTAAACTATTATGTTTCTCTAGGT------AGAGAAAACTTTGCATATTCAATAAAATCGCTGCAATTCATAACATACAATTGTCTCAGATCTGAGCTGAGGTGTTTCTGGTAACATTCATGGGTGTTATGTGACATGACAGTATGTGCAGTGCCAAGGGTGCGTACTGTGTGTTCAC-AACCAAGGCTGTGGTGATGTCATGAGATGTAACATAGACAATGGCTGCCAGAAACA i echTel1.scaffold_312291 I 3 C 0 s sarHar1.chr2_GL841571_random 1959679 301 + 2798521 ---ACACAATACAATCTAAAGACATACTAATC-----TTTACATGCTGAAGaatgatgaaaggaaaatattaaaagtctTTATTTCCCGTAATTAAGCTATTAGGTTTCTGTAAGA------GCAGACAATTTTGTATGTACAGTAAAAACAGTGCAATTCATAACATACAATAGCCTCGAATCTGGGCCAAGGTATTTCTGGCA----------GTGCTGTGTG-CCTGATGACATGTGCAGTGCAAAGTGTGCGTGTTGTATGTTCAG-AACCAAAGTTGCAGTAAAGCTGTGCAATGCATCATGGGCAAGCGCTGCTAGAAACA i sarHar1.chr2_GL841571_random I 3 I 7 s anoCar2.chr6 55337553 315 + 80741955 cCCACACAATACTG-----ATATTGTGTACTCATAAAATTTCATGCTAAGGAATGAAGGtaggaaaatattaaaaatctttattttccatAATTAAACTATCCTCTTTTTGTAAGG------GTCGAAAACTTTTTATGTACAGTAAAAACACCGCAATTTATAACTTATAATAGTCTCGAATCTGAGCCGAGATATTTCTGACAGTGTTCGTTGGCATGGAGTAATGTGACAGCATGCACGGTGCAAAGTGTGCATGTTGTGTGTTCAG-AACCAAGGCTGTAGTGAAGTCATGCAATGCAACATAGATGAGGGCTGCCAGAAACA i anoCar2.chr6 C 0 I 10 e macEug2.GL138109 12828 471 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=135.000000 s mm10.chrUn_GL456366 3769 2 + 47073 ac s rn5.chr7 143063885 2 + 143501887 cc i rn5.chr7 C 0 C 0 s echTel1.scaffold_312291 4827 2 + 42248 GC i echTel1.scaffold_312291 C 0 N 0 s sarHar1.chr2_GL841571_random 1959987 2 + 2798521 AT i sarHar1.chr2_GL841571_random I 7 C 0 s macEug2.GL138109 13299 2 - 26650 at i macEug2.GL138109 I 471 C 0 s anoCar2.chr6 55337878 2 + 80741955 AT i anoCar2.chr6 I 10 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=1489.000000 s mm10.chrUn_GL456366 3771 4 + 47073 catg s rn5.chr7 143063887 4 + 143501887 catg i rn5.chr7 C 0 C 0 s sarHar1.chr2_GL841571_random 1959989 4 + 2798521 TATG i sarHar1.chr2_GL841571_random C 0 C 0 s macEug2.GL138109 13301 4 - 26650 taca i macEug2.GL138109 C 0 I 34 s anoCar2.chr6 55337880 4 + 80741955 TACA i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=11652.000000 s mm10.chrUn_GL456366 3775 33 + 47073 catttaattttgaattaatttttgattcctgag s rn5.chr7 143063891 33 + 143501887 catttaattttgaattaatttttgattactgtg i rn5.chr7 C 0 C 0 s sarHar1.chr2_GL841571_random 1959993 33 + 2798521 CATtagattttgaattaaattttggtcATTGTA i sarHar1.chr2_GL841571_random C 0 C 0 s anoCar2.chr6 55337884 33 + 80741955 AATTTGATTGTGAAATAATTTTTGATCATtgtg i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 13305 34 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=3889.000000 s mm10.chrUn_GL456366 3808 7 + 47073 tatacag s rn5.chr7 143063924 7 + 143501887 tattcag i rn5.chr7 C 0 C 0 s sarHar1.chr2_GL841571_random 1960026 7 + 2798521 CGTTCAG i sarHar1.chr2_GL841571_random C 0 C 0 s macEug2.GL138109 13339 7 - 26650 aattcag i macEug2.GL138109 I 34 I 13 s anoCar2.chr6 55337917 7 + 80741955 cattcag i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=546.000000 s mm10.chrUn_GL456366 3815 1 + 47073 a s rn5.chr7 143063931 1 + 143501887 a i rn5.chr7 C 0 C 0 s sarHar1.chr2_GL841571_random 1960033 1 + 2798521 A i sarHar1.chr2_GL841571_random C 0 C 0 s anoCar2.chr6 55337924 1 + 80741955 a i anoCar2.chr6 C 0 C 0 e macEug2.GL138109 13346 13 - 26650 I e micMur1.scaffold_16960 4681 163 + 14372 I a score=2296.000000 s mm10.chrUn_GL456366 3816 3 + 47073 aac s rn5.chr7 143063932 3 + 143501887 aac i rn5.chr7 C 0 C 0 s sarHar1.chr2_GL841571_random 1960034 3 + 2798521 AAC i sarHar1.chr2_GL841571_random C 0 C 0 s macEug2.GL138109 13359 3 - 26650 aat i macEug2.GL138109 I 13 N 0 s anoCar2.chr6 55337925 3 + 80741955 aac i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=11209.000000 s mm10.chrUn_GL456366 3819 76 + 47073 tttttattattgtcaaaattatcatgg-tcctcatattcagttttgctaactcacaagggatcatca--------cctatagctt s rn5.chr7 143063935 76 + 143501887 tttttattattgtcaaaattttcatgg-ccctcatattcagttttgctaacccacatgggctcatca--------ccaacagctt i rn5.chr7 C 0 C 0 s sarHar1.chr2_GL841571_random 1960037 74 + 2798521 CTTTCTCTGTTGGCAAATTTTTTGTGA-TCCTCACAGT--GTTATGCGGCCCCATGTAGGGTCATGA--------CTtgtagttt i sarHar1.chr2_GL841571_random C 0 C 0 s anoCar2.chr6 55337928 83 + 80741955 cttttattgttgttaaA-TCTTAGTGACCCCTCATAGTTAATC-TGTGAACCTAGGTGGAAATTTGCAAGGCATTTCTCCAGTTC i anoCar2.chr6 C 0 C 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=1252.000000 s mm10.chrUn_GL456366 3895 10 + 47073 gag-agcctta s rn5.chr7 143064011 11 + 143501887 aagaagctTCA i rn5.chr7 C 0 C 0 s pteVam1.scaffold_16343 9315 10 - 24800 -ggaggccatg i pteVam1.scaffold_16343 N 0 C 0 s sarHar1.chr2_GL841571_random 1960111 11 + 2798521 aagaagttttg i sarHar1.chr2_GL841571_random C 0 I 5 s anoCar2.chr6 55338011 10 + 80741955 -TGCAGTCTTA i anoCar2.chr6 C 0 N 0 e micMur1.scaffold_16960 4681 163 + 14372 I a score=5413.000000 s mm10.chrUn_GL456366 3905 26 + 47073 -agctatgggatatgcacaatctctag s rn5.chr7 143064022 26 + 143501887 -AGCTAAGGAATGTGGGCAACCACGAG i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4844 26 + 14372 -agctaaggattgcaggcagcctctag i micMur1.scaffold_16960 I 163 C 0 s pteVam1.scaffold_16343 9325 26 - 24800 -agccaaggcatgtaggcagttcctag i pteVam1.scaffold_16343 C 0 C 0 s sarHar1.chr2_GL841571_random 1960127 21 + 2798521 AAGTAGGGGAGTGGTGGGAGC------ i sarHar1.chr2_GL841571_random I 5 C 0 a score=588.000000 s mm10.chrUn_GL456366 3931 2 + 47073 gg s rn5.chr7 143064048 2 + 143501887 GG i rn5.chr7 C 0 C 0 s tarSyr1.scaffold_18416 1892 2 - 25331 aa i tarSyr1.scaffold_18416 N 0 I 342 s micMur1.scaffold_16960 4870 2 + 14372 aa i micMur1.scaffold_16960 C 0 C 0 s pteVam1.scaffold_16343 9351 2 - 24800 aa i pteVam1.scaffold_16343 C 0 I 3 s sarHar1.chr2_GL841571_random 1960148 2 + 2798521 GG i sarHar1.chr2_GL841571_random C 0 C 0 a score=23.000000 s mm10.chrUn_GL456366 3933 39 + 47073 ggaaaagtcatggaaatgacttttactctaggcatct---------------gt s rn5.chr7 143064050 39 + 143501887 GGAGGAGTCATGGAAAGGACTTTTCCTCCAGGCATCT---------------CT i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4872 53 + 14372 ggacaaagcaaggaaatgaattctcccctagagcccccagaaggaatacagtc- i micMur1.scaffold_16960 C 0 I 1 s pteVam1.scaffold_16343 9356 54 - 24800 ggaaatggcaaggaaatggatttgcctttagagcttccagaagcaatgtaaccc i pteVam1.scaffold_16343 I 3 C 0 s sarHar1.chr2_GL841571_random 1960150 35 + 2798521 -GGAAAGGTGTTGAAGGACTCTATCATTCCGTCAAT------------------ i sarHar1.chr2_GL841571_random C 0 C 0 e tarSyr1.scaffold_18416 1894 342 - 25331 I a score=5450.000000 s mm10.chrUn_GL456366 3972 33 + 47073 -ttttcatacctttatttt-----agttctgtgaatcag s rn5.chr7 143064089 33 + 143501887 -CTTTCATACCTTTATTTT-----AGTCCTGTGAATCAG i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4926 30 + 14372 -tgctgatgccttgatttt-----agccctgtga---ga i micMur1.scaffold_16960 I 1 C 0 s pteVam1.scaffold_16343 9410 26 - 24800 -tgtggatgccttgatttt-----agccccat------- i pteVam1.scaffold_16343 C 0 C 0 s sarHar1.chr2_GL841571_random 1960185 39 + 2798521 TGtatcatctttctatttttaaagagatctGGGATACAG i sarHar1.chr2_GL841571_random C 0 N 0 e tarSyr1.scaffold_18416 1894 342 - 25331 I a score=152.000000 s mm10.chrUn_GL456366 4005 3 + 47073 cat s rn5.chr7 143064122 3 + 143501887 CAT i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4956 3 + 14372 gac i micMur1.scaffold_16960 C 0 C 0 e tarSyr1.scaffold_18416 1894 342 - 25331 I e pteVam1.scaffold_16343 9436 0 - 24800 C a score=9166.000000 s mm10.chrUn_GL456366 4008 59 + 47073 acttctcagaagcatgatttccagaattgaaggatgaatggtgtttggaatacaccagg s rn5.chr7 143064125 59 + 143501887 CTCTCTCAGAAGTATGATTTCCAGACTTGAAGGATGAATGGTGTTTGGAATAAACTAGG i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 4959 58 + 14372 ccatttcagatatctgatgtccagaactgtaagatttatgttgttt-tattgaacttct i micMur1.scaffold_16960 C 0 C 0 s pteVam1.scaffold_16343 9436 50 - 24800 -----tcagacatcatatctccagaactgtaagatttgtattgttt----taagccact i pteVam1.scaffold_16343 C 0 C 0 s sarHar1.chr3_GL849604_random 4507378 54 - 4836507 AAATCTTGGTTGCTTTATCTATAGAAT---AAGGTCAATAGGATAT--ACTACAATAGG i sarHar1.chr3_GL849604_random N 0 I 3595 e tarSyr1.scaffold_18416 1894 342 - 25331 I a score=3956.000000 s mm10.chrUn_GL456366 4067 11 + 47073 aactttgtagt s rn5.chr7 143064184 11 + 143501887 AACTTTGTAGT i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 5017 11 + 14372 aaatttgtagt i micMur1.scaffold_16960 C 0 C 0 s pteVam1.scaffold_16343 9486 11 - 24800 gcatttgcagt i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 1894 342 - 25331 I e sarHar1.chr3_GL849604_random 4507432 3595 - 4836507 I a score=14230.000000 s mm10.chrUn_GL456366 4078 93 + 47073 aatttgttacagcggacatagtaaaTACA---------AAGACTTCTTGGCAG-GCTGCTTTGTCT-GGCAGCTTCACCAGGTGGGGAGAATCTCCATTTAGGG s rn5.chr7 143064195 91 + 143501887 AA--TGCTACAACAGACATAGTAAATACA---------AAGCCTTCTTGGCAG-GCTGCTTTGTCT-GGCTGCCTCCCCACATGGGGAGAATCTCCATTTAGGG i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 5028 76 + 14372 aatttgttgcagcagcgataggaaaTGCA-------GCAGATCTCTTTGGCAG-GCTACTTTGTCC-AGCTGCCTCTTCCCCAGG------------------- i micMur1.scaffold_16960 C 0 C 0 s tupBel1.scaffold_8805.1-199132 155424 96 - 199132 AATTTGTTACAACAGCGATAGGAAATATATGTCAGGGCGGATCTCTTCAGCGG-GCCATTTTGTCCTAGCTACCTCTCCTCAAGGAGAG-------TCTTATGC i tupBel1.scaffold_8805.1-199132 N 0 C 0 s pteVam1.scaffold_16343 9497 85 - 24800 tatttgttacagcagtaatagggaacatacaCAGAGGTAGATTTTCTTTTTAGTGCAGATTTA----GTGTAGATTTTCTTAGGG-----------TTTT---- i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 1894 342 - 25331 I e sarHar1.chr3_GL849604_random 4507432 3595 - 4836507 I a score=17458.000000 s mm10.chrUn_GL456366 4171 55 + 47073 TAAACCCTAAGTAG-TCTTGAATTTTAGGCTGGTGTAGGAATACAGTTCT-ATAGCA s rn5.chr7 143064286 56 + 143501887 CAAACCCTAAGCAGCCCTTGAGTTTTAAGCTGGTGTAGGAGGACAATTCT-ATAGCA i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 5104 45 + 14372 ----------GAGG-TTCTGAGTTTTGAGCTAATATGAGAGGACCATTCT-GTGACA i micMur1.scaffold_16960 C 0 C 0 s tupBel1.scaffold_8805.1-199132 155520 55 - 199132 AAAACTCTGAGTGG-TTTGGAGTTTTGAGCTAATGTAGGAGGACAATTGTCCTGGC- i tupBel1.scaffold_8805.1-199132 C 0 C 0 s pteVam1.scaffold_16343 9582 49 - 24800 ------CTAAGCAG-TGATGAGTTTCGAACTAATATGGGAGGATGATTCT-ATTATA i pteVam1.scaffold_16343 C 0 C 0 s sarHar1.chr3_GL849604_random 4511027 55 - 4836507 TAAACCCAAAGTAG-CCTTTAAATCTAAGGTCATGTTGCTATCTATTTAT-AGAGAA i sarHar1.chr3_GL849604_random I 3595 N 0 e tarSyr1.scaffold_18416 1894 342 - 25331 I a score=6966.000000 s mm10.chrUn_GL456366 4226 36 + 47073 GTTTCTCACTCATACATG-------------GATGATGAGGGAGGGAGA s rn5.chr7 143064342 33 + 143501887 G---CTCACTCATGCTTG-------------GATGAGGAGGGAGGGAGA i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 5149 44 + 14372 G-----CCCTCATGCTGAGGGGGTGAGTGATGGTGACGACGGTGGGGGA i micMur1.scaffold_16960 C 0 I 4 s tupBel1.scaffold_8805.1-199132 155575 43 - 199132 ------CCCTCGTGTGTGTGGGGTAGGTGGTGGTGAAGATGGAGAAGGG i tupBel1.scaffold_8805.1-199132 C 0 I 3 s pteVam1.scaffold_16343 9631 43 - 24800 G---CCCCATCATGCACATGAGGTCAGT---GATGAAGATGGTGGGAAA i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 1894 342 - 25331 I a score=241.000000 s mm10.chrUn_GL456366 4262 6 + 47073 AGATGA s rn5.chr7 143064375 6 + 143501887 AGACGG i rn5.chr7 C 0 C 0 s tarSyr1.scaffold_18416 2236 4 - 25331 --GTAT i tarSyr1.scaffold_18416 I 342 I 235 s micMur1.scaffold_16960 5197 4 + 14372 --ATAT i micMur1.scaffold_16960 I 4 I 1 s tupBel1.scaffold_8805.1-199132 155621 4 - 199132 --ACAT i tupBel1.scaffold_8805.1-199132 I 3 I 1 s pteVam1.scaffold_16343 9674 6 - 24800 GGGTAG i pteVam1.scaffold_16343 C 0 C 0 a score=45372.000000 s mm10.chrUn_GL456366 4268 175 + 47073 --CACCA---GGACTGGAGTGTAGCATGCCT---------------------TCAGGACTCACACACAGGAACATATCACTACCATGT-TCAGAGTATGCTCTCCTTGGTAGATTTCTTTGTGTGGTTTGTTTCTTCTGGGTGAACC--------------------TTAAGACTTCAAATTCCTAATCTGTAAATAAGAAAGCTAAATATAAGTTCTTTCA s rn5.chr7 143064381 195 + 143501887 --TACCA---GGACTAGAATGTGGCAAGCCTTCAGTATCCCAGGAA-CTTGATCAGGACTCACACACAGGAACAAAACACTACCATGT-TTGGAACACCCTCTCATTGGTACATTTCTTTGTGTGGTTTGTAGTTTCTGGGTGACCC--------------------TTTGAACTTGAAATTGCTAATCTGAAAATAATAAAGCAAAATATCAGTTCTTTCA i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 5202 214 + 14372 --AACCA----GACTTGAGTGCAGCTTTTGTGCACCTGCTCAGGGA-CTTGATTAGGACTCACGCGCAAGGGCAGAGTA-CACCTTGTGTCTAATTCTCTTTCcctgggtgcatatctttgtgtgatttggagtcaccaggtgacccaggaagagacactcttactctttggatctcagacttctcatttgtaaataaaagggttggctcagatttctctca i micMur1.scaffold_16960 I 1 I 25 s tupBel1.scaffold_8805.1-199132 155626 208 - 199132 --CGCCA----GCTCTGAATATAGTATTTATGCAAAGAATCAGGAA-CTTGATTAGAACTCAAGTGCCAAGAC-------CAGCACATGTCTAAGTCCCTTGCCATGGGTGTATTTCTTTGTGTGGTTTGGAGtcactgagtgacttaggaaggggcatacttattatttgcatctcaaacacctcatctgtaaataaagggtctggatcagattcctttca i tupBel1.scaffold_8805.1-199132 I 1 I 26 s pteVam1.scaffold_16343 9680 205 - 24800 CATATTAAGTGGGCTTGAGGGCATCAT-CATGGAAATGATCAGGGAGGCTGATTACAGCTAATGCACAAGAACATAGTAGCACTTTCT----------------ctgggtgcttgtcttcacgtggcttcaagtcactcggtgacccgggaaaaggtactcttcctctttgaagctcaaattgctcttttgtaagtaaagaggttggatcagatttctctca i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 2240 235 - 25331 I a score=-10237.000000 s mm10.chrUn_GL456366 4443 2 + 47073 ------------------------------------TT--------- s rn5.chr7 143064576 1 + 143501887 -------------------------------------G--------- i rn5.chr7 C 0 C 0 s tarSyr1.scaffold_18416 2475 2 - 25331 ------------------------------------CC--------- i tarSyr1.scaffold_18416 I 235 I 128 s micMur1.scaffold_16960 5441 2 + 14372 ------------------------------------TT--------- i micMur1.scaffold_16960 I 25 I 19 s tupBel1.scaffold_8805.1-199132 155860 2 - 199132 ------------------------------------TT--------- i tupBel1.scaffold_8805.1-199132 I 26 I 15 s pteVam1.scaffold_16343 9885 47 - 24800 ggcctgggcagctcagaTGCTAGCCTTGACCTTCACTTGGTCAGTGT i pteVam1.scaffold_16343 C 0 C 0 a score=10746.000000 s mm10.chrUn_GL456366 4445 110 + 47073 TCCTCTCAGTCTTAG--CTCCCACAGCCTTCTCTTGCCCTTGCAAACATATGGAGACACAGAGTATGGCCCAG---AATCGGCATTGAGACCTCTATGCCAT----CATGTTCAGCAAT-- s rn5.chr7 143064577 110 + 143501887 TCTTCTCCGTCTTAG--CTCCCACAGCCTTCTCTTGCCTTTGCAAACATACAGAGATACAGAGAATGGCCCAG---AGTCTGCATTGAGGTATCTATGCCAT----CATCATCATCAGT-- i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 5462 99 + 14372 TCCC-TCTGCCCCAC-ACCACCTCTGTATTCTCTTGCC-TTG---ACACACTGACACCCAGAG---GGTCCAG---AGACAGACTT---CTCTCCAGCCTGT-----GTGCCCTGCACT-- i micMur1.scaffold_16960 I 19 I 18 s tupBel1.scaffold_8805.1-199132 155877 99 - 199132 TTCCATCTGCCTGAG-CCTACACCTGTATTCTCTTGCCTTTG---ACATTCT-ATA-CCAGAG---GTCCCAG---ACACAAGCTT---CTTCCTGGGGCAT-----GTGTCCTGCTTT-- i tupBel1.scaffold_8805.1-199132 I 15 I 19 s pteVam1.scaffold_16343 9932 112 - 24800 CCCCCTCTGCCCTATCCCCGCCCCTACATTCTCTTGTTTTAG---ACACACTGATACACAGAG---GTCCCAAGACAGGCTACTTT---CCTTGTGTGCCCTGCACAATGTTCCTCAAGTT i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 2477 128 - 25331 I a score=-4622.000000 s mm10.chrUn_GL456366 4555 2 + 47073 CC- s rn5.chr7 143064687 2 + 143501887 TA- i rn5.chr7 C 0 C 0 s tarSyr1.scaffold_18416 2605 1 - 25331 C-- i tarSyr1.scaffold_18416 I 128 I 420 s micMur1.scaffold_16960 5579 1 + 14372 C-- i micMur1.scaffold_16960 I 18 I 1 s tupBel1.scaffold_8805.1-199132 155995 1 - 199132 C-- i tupBel1.scaffold_8805.1-199132 I 19 C 0 s pteVam1.scaffold_16343 10044 2 - 24800 -CA i pteVam1.scaffold_16343 C 0 C 0 a score=39650.000000 s mm10.chrUn_GL456366 4557 107 + 47073 T---------TTCATCTAATTTGTCTGGAAGGAACACTTCACACAGAAAAATTGTCAGAAAA---GGGTGTGTATCATATTTTTCATATTC------------CTTCTGATGCAAAGGCTGCTTTCAACTG s rn5.chr7 143064689 116 + 143501887 TCCTTAAACGTTCACTTGATTTGTCTGGAAGAATCACTTCATACATAAAAATTATCAGAACA---GGGTGTGTATCATATTTTTCATATTT------------CTTCTGATGCAAAGGCTGCTTTCAGCTG i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 5581 122 + 14372 ---------CAGCTCCTCATTTGCCTGGAAGAAACTCTTTGTACAGAATAATTGCTATAAACTATATGTTTTTGTCATATTCTGTAAATTCCAGAACACGATACTTGTGGTGTAGAGGCTGCTTCCTGCTG i micMur1.scaffold_16960 I 1 I 4 s tupBel1.scaffold_8805.1-199132 155996 122 - 199132 ---------TGAATCCTCATTTGCCTGGGAGACACCCTTTGCACAGAGTAATTGCCACAAACTACATATTTTTGCTATGTATTCTAGACTCCAGAACATGATACTTCTGGAGCAAGGACTATTTTCTACTG i tupBel1.scaffold_8805.1-199132 C 0 I 301 s pteVam1.scaffold_16343 10046 122 - 24800 ---------CGGCTCCTCACTTGACTGGGAAAAACCCCCTGTATAGAATATTTTCCATAAACTGTATGTTTTTGCCATATTTTCCGGATCCCAAAACATGATACTTTTGATGAAGAGGCTGCTCCCTGCCG i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 2606 420 - 25331 I a score=97571.000000 s mm10.chrUn_GL456366 4664 284 + 47073 GAGTGGAGG-AAAGGGAGTTTG--TACCCTCCTTCCTTG-AGTCTTCATTGTTGAATTTT--------GTTGTAAATTTTTAGTTGTAGCCTATATAGGACAGCAGAAGGTACAATTAGACAGCTAA--CTTCATAT--TTCCAGCAACTGGCTGTGTGATTTTTGTCTTTTGTAATTTTGTGGTAAATATTTAAAACTGATTATATCT-AATTCAGTTTTTAAAATAATTTCAATATGTATCTGAGGCTAGAATAATATGTT-AAACACCTTTATCATATGTCCAC-------TGACTCTAGATTTTA s rn5.chr7 143064805 286 + 143501887 GAGTGGAGG-AAAGGAAGTATG--GAGCCTGCTTCCTTGAAACCTTCATTGTTGAATTTT--------GTTGTAAATCATTGGTTATATCCTATATATGACAGCAGAGGGTGCAATTAGACATCTAA--CTTCATAC--TTCCAGGGAATGGCTGTGTGATTTTTGTCTTTTGTAATTTTGTGGTAAATATTTAAACCTGGTTACAGTTAAATTTAGTTTTTAAAATAATTTCAAGGCATATATAGGGCTAGAATAATATGTT-AAACATCTGTATTATATGCCCAC-------TGACACTAGATTCTA i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 5707 275 + 14372 GAAAGGGAG-GGAAGCACTGTACCTGAGAGACTTCTCTGGCTTCTTCAGTGTTGATTTTT--------GCTGTAAATTATTGGTCATAGCCTATTTTGAACAGGAGAGGGCACCATTGGACAGCTAAATTTTCATAATGTT-----ACATGGCTGTGTGACTTTCACT-----------TGCGTTAGATATTTAAAACTGATCACAATT-AATCTAGTTTGTGAAATAATCAAAAGAAATAAACAAGAATAGAATAATATATTGAAATGCCTGTTTGACGTGCCTAC--------TAGATGAAATTTTA i micMur1.scaffold_16960 I 4 C 0 s tupBel1.scaffold_8805.1-199132 156419 277 - 199132 gaaagaaag-aaGGGAAATGTG--TGGAAGAC--CCCTGAATTCCTCAGTGCTGATTTTTG-------GCTCTTAATTGTTGGCCATAGCTTATTTGGAACAGCAGAGGGTGCTATTGGATAGCTGAATTTTCCTAA--CT-----AAATAGCGATGTGAATTTTATTTTTAATAACTCTGTGACAAGTATTTAAAACTAATTATAGTT-ACTGTAGCTTATAAAATAGTTCAGATAAATAGACA-----AGAATAATATATT--AGCACCTATGTGACATGTTCACAG-----TCAGATCAAATTTTT i tupBel1.scaffold_8805.1-199132 I 301 C 0 s pteVam1.scaffold_16343 10168 301 - 24800 GACTGGAAGTGAGGGCAGTGCG--TGGGAGACTTTTCTGGCTTCTTCAGGGAGGGTTTTTTTTTTCCCGCTGTAAATTACTGGCCATAGCCTATTTTGAACAGCAGGGGGCATTGTTGGACAGCTAAATTTTCATGT--GTGAAATGAGTGGCTGTGCGAATTTCATATTTGATAATTCTGTG--AGATATTTAAAACTAATTGTAGTT-AATCTAGTTTGTGAAATATTTTGAAAAAATAGTCAAGGATAGAATAATACAAT-AAGTATCCATGTTACATACCCACAGTCCAACTAGATCAAATTTTA i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 2606 420 - 25331 I a score=1049.000000 s mm10.chrUn_GL456366 4948 2 + 47073 GC s rn5.chr7 143065091 2 + 143501887 AC i rn5.chr7 C 0 C 0 s tarSyr1.scaffold_18416 3026 2 - 25331 AT i tarSyr1.scaffold_18416 I 420 I 5 s micMur1.scaffold_16960 5982 2 + 14372 AT i micMur1.scaffold_16960 C 0 C 0 s tupBel1.scaffold_8805.1-199132 156696 2 - 199132 AT i tupBel1.scaffold_8805.1-199132 C 0 C 0 s pteVam1.scaffold_16343 10469 2 - 24800 AC i pteVam1.scaffold_16343 C 0 C 0 a score=1386.000000 s mm10.chrUn_GL456366 4950 2 + 47073 AG s rn5.chr7 143065093 2 + 143501887 AG i rn5.chr7 C 0 C 0 s micMur1.scaffold_16960 5984 2 + 14372 AG i micMur1.scaffold_16960 C 0 N 0 s tupBel1.scaffold_8805.1-199132 156698 2 - 199132 AG i tupBel1.scaffold_8805.1-199132 C 0 C 0 s pteVam1.scaffold_16343 10471 2 - 24800 AA i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 3028 5 - 25331 I a score=-1088.000000 s mm10.chrUn_GL456366 4952 3 + 47073 GGT-- s rn5.chr7 143065095 3 + 143501887 GTT-- i rn5.chr7 C 0 C 0 s tupBel1.scaffold_8805.1-199132 156700 1 - 199132 --T-- i tupBel1.scaffold_8805.1-199132 C 0 I 2 s pteVam1.scaffold_16343 10473 3 - 24800 --TAT i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 3028 5 - 25331 I a score=2115.000000 s mm10.chrUn_GL456366 4955 3 + 47073 GTG s rn5.chr7 143065098 3 + 143501887 GTG i rn5.chr7 C 0 C 0 s tarSyr1.scaffold_18416 3033 3 - 25331 GTA i tarSyr1.scaffold_18416 I 5 I 9 s tupBel1.scaffold_8805.1-199132 156703 3 - 199132 GTA i tupBel1.scaffold_8805.1-199132 I 2 I 4 s pteVam1.scaffold_16343 10476 3 - 24800 GTG i pteVam1.scaffold_16343 C 0 C 0 a score=-386.000000 s mm10.chrUn_GL456366 4958 7 + 47073 ----TATTCTC s rn5.chr7 143065101 7 + 143501887 ----TATTTGC i rn5.chr7 C 0 C 0 s tupBel1.scaffold_8805.1-199132 156710 7 - 199132 ----TATTAGC i tupBel1.scaffold_8805.1-199132 I 4 I 23 s pteVam1.scaffold_16343 10479 10 - 24800 GATTTAATCT- i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 3036 9 - 25331 I a score=-1714.000000 s mm10.chrUn_GL456366 4965 3 + 47073 TAA s rn5.chr7 143065108 3 + 143501887 TAC i rn5.chr7 C 0 I 3 s tarSyr1.scaffold_18416 3045 1 - 25331 T-- i tarSyr1.scaffold_18416 I 9 I 43 s tupBel1.scaffold_8805.1-199132 156740 1 - 199132 t-- i tupBel1.scaffold_8805.1-199132 I 23 C 0 s pteVam1.scaffold_16343 10489 3 - 24800 TAA i pteVam1.scaffold_16343 C 0 C 0 a score=4846.000000 s mm10.chrUn_GL456366 4968 40 + 47073 AGAAAGAGAAACAGTGATGTTGTCAATGTAAACTT-AGTCT--- s rn5.chr7 143065114 41 + 143501887 AAAAAAAGAAACAATTATGTTGTCAATGTAACCTTGAGTCC--- i rn5.chr7 I 3 C 0 s tupBel1.scaffold_8805.1-199132 156741 39 - 199132 aaaaaatgaaatagtaa-ggtatcagt-taaccttgagttc--- i tupBel1.scaffold_8805.1-199132 C 0 I 3 s pteVam1.scaffold_16343 10492 38 - 24800 AAAAAATTAAACAGTAAAGTAG------CAACCGTGAATcttct i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 3046 43 - 25331 I a score=579.000000 s mm10.chrUn_GL456366 5008 3 + 47073 TTT s rn5.chr7 143065155 3 + 143501887 TTT i rn5.chr7 C 0 C 0 s tarSyr1.scaffold_18416 3089 3 - 25331 ccc i tarSyr1.scaffold_18416 I 43 I 3678 s tupBel1.scaffold_8805.1-199132 156783 3 - 199132 tcc i tupBel1.scaffold_8805.1-199132 I 3 C 0 s pteVam1.scaffold_16343 10530 3 - 24800 ctc i pteVam1.scaffold_16343 C 0 C 0 a score=29566.000000 s mm10.chrUn_GL456366 5011 153 + 47073 TTTCTACCCATAATTAGCAACCACAATTAATTTAGCATTTATTTCCACCTCTCATGCACCTAGATTATAAATATCATAAATATATACCTATTTGCATTTTCAA-----AGTATTGCTTTGCAAACTTAAAAATTTGCATATGTGGTTCCATACTTTCG s rn5.chr7 143065158 146 + 143501887 TTTCTACCCATAATTAGCAACCATAAATAAT------TTCATTTCCACCTCTCATGCTCCTAGGTTTTAAATGTCATAACTATTTACCTATTTGTA-TTCCAA-----GATATTGCTTTGCAAACTTGAAATTTTGTTTGTGTGGCTCCATACCTTGG i rn5.chr7 C 0 C 0 s tupBel1.scaffold_8805.1-199132 156786 152 - 199132 tttccactaagaactaacctaaattattaatttagtattta-tcatatattttatgcttttacttttaaaaaaccagtcatat----ctactagta-ttataaaatatggtattgctttgcacatttaaaatttcatataaatggtctcatacgtttg i tupBel1.scaffold_8805.1-199132 C 0 N 0 s pteVam1.scaffold_16343 10533 152 - 24800 tttccactcagaactagccactgtcattaattgagtgtttatccttgccttgcatacttttaactttttaaatacataatcatgtgtccatcggta-ttataa-----agtatctctttacagattttaaattttctataagtggtctcacacttctg i pteVam1.scaffold_16343 C 0 C 0 e tarSyr1.scaffold_18416 3092 3678 - 25331 I a score=819.000000 s mm10.chrUn_GL456366 5164 3 + 47073 TTT s rn5.chr7 143065304 3 + 143501887 TTT i rn5.chr7 C 0 C 0 s pteVam1.scaffold_16343 10685 3 - 24800 ttt i pteVam1.scaffold_16343 C 0 N 0 e tarSyr1.scaffold_18416 3092 3678 - 25331 I a score=4250.000000 s mm10.chrUn_GL456366 5167 82 + 47073 GTCTTTGTGTTGATGGCAACTGATCTCTAGACAACAGATCTCCAGAT---CATCATTCTTCCAAAGGGAAAGATTG-TGGAGGTGT s rn5.chr7 143065307 86 + 143501887 GTCTTTGAGTTGATGGTGACAGAGGTCTAGACAACAGATCCCCAGATCTCCCTTGTTCTTCCAAAGGGGAAGGTTGAAGAAGGGGC i rn5.chr7 C 0 C 0 e tarSyr1.scaffold_18416 3092 3678 - 25331 I a score=-155.000000 s mm10.chrUn_GL456366 5249 1 + 47073 T s rn5.chr7 143065393 1 + 143501887 A i rn5.chr7 C 0 C 0 s tarSyr1.scaffold_18416 6770 1 - 25331 T i tarSyr1.scaffold_18416 I 3678 I 28 a score=1238.000000 s mm10.chrUn_GL456366 5250 20 + 47073 CCTTCATGTCCTGCTCTGCA s rn5.chr7 143065394 20 + 143501887 CCTTCACATCCTTCTCTTCA i rn5.chr7 C 0 C 0 e tarSyr1.scaffold_18416 6771 28 - 25331 I a score=136.000000 s mm10.chrUn_GL456366 5270 2 + 47073 TT s rn5.chr7 143065414 2 + 143501887 TG i rn5.chr7 C 0 C 0 s tarSyr1.scaffold_18416 6799 2 - 25331 TT i tarSyr1.scaffold_18416 I 28 I 194 a score=8713.000000 s mm10.chrUn_GL456366 5272 188 + 47073 CTTCCTCTCTTTTATGCTGAAGATGAGGAATGTCTCTCAAATTTCTGCTTCACCTCACAATTTTGTTCTTTAATTTTATTCAGTTTGCATCCAGACCACCTTTTATGAACACAATATATTACTGAATTACTCACAGTGGAATTGCTCTGTGTTTTCCAATTTTCAGCTGCTTGTTTCCTTTTTGTAAT s rn5.chr7 143065416 164 + 143501887 CTTCTTCCCTATTATGCCGAAGGTAAGGAAAACCTCTCAATTTGCTGCTTCAGCTCACTATTTTGCTCTATAATTCTATACACTTTGCATCCAGACCTTCTT------------------------TTNNTCGGAGTGGAGTTGCTCTGTGTATCCCATTTTTCTGCTGCTTATTTTCGTCTTGTAAT i rn5.chr7 C 0 C 0 e tarSyr1.scaffold_18416 6801 194 - 25331 I a score=-829.000000 s mm10.chrUn_GL456366 5460 1 + 47073 -T s rn5.chr7 143065580 1 + 143501887 -T i rn5.chr7 C 0 C 0 s tarSyr1.scaffold_18416 6995 1 - 25331 G- i tarSyr1.scaffold_18416 I 194 N 0 a score=1798.000000 s mm10.chrUn_GL456366 5461 45 + 47073 TCTGTGTCTCTTTTTACACTATTTTTTTCCAAAATGTTTGGTAAC s rn5.chr7 143065581 42 + 143501887 TC--AGTCTCATCTTAGACTAGTTTCTT-CAAAATGTTTGGTAAT i rn5.chr7 C 0 C 0 a score=0.000000 s mm10.chrUn_GL456366 5506 407 + 47073 tgtactggctagttttgtgtcaacttgacacagctggagttatcacagagaaaggagcttcagttgaggaaatgcctccatgagatccaactgtaaggcattttctcaattagtgatcaagggggaaaggccccttgtgggtggtgccatctctgggctggtagtcttggttctttaagagagtaggctgagcaagccaggggaagcaagccagtaaagaacatccctccatggcctctgtatcagctcctgcttcctgacctgtttgactgtttgagttccagtcctgacttccttggtggtaaacagcagtatggaattgtaagctgaataaaccctttcctccccaacttgcttcttggtcatgatgtttgtgcaggactagaaaccctgcctaagacaGTAAG e rn5.chr7 143065623 0 + 143501887 C a score=39302.000000 s mm10.chrUn_GL456366 5913 667 + 47073 TTTTGTTTGTTGCATGTCTTTGAAAGTCTATTCTGTCACTGTCGTCAGCGTCCAGGGTTGGCTGAGGCTCCTCATCCCTCCTGAGAGTCAGTAACAATTCTAGAGGCAATGCCACTTAGATCATGGTCCCATAGCTGGATATCCAGTGTTCTGTATACATAGGTGGAGGTTGACTGTGGAATGAACTGTGAAAGCTTTTTATAGTCTGAACTCCTGCTTTTGAGATCAT--TACACTGAAAATGCTAAATCTAAAATGAGTAATATTTGAAACATTTAAATGCCACAAAACATTTCAAATATATATGGAAACAAATTAAGAATTCTTTTCTTATTTCAGTGTGATCTTACTCTGAAATGTATTTAAAGTTGACAACTAAGTT--TTTTTAAGTTTCTTTATTCTTTCaaaaatttaaa----tttatttatttatttattCAATTTACCTCCCAGTATCAGTGCCCCCCCCCCAAAGCTAAATACTTTAAATAGGAGTCCTCCTGAGTCGGGACCCCaaatcatacatcttcatgacacttgctcaactatgttcatagcaacttcattcataatagctaaaaacatgaaacaacctagatgtccctcaaaagaagcatagagaaataaaatataatacatttacacaacagaaaattaattaggtcttttaaaa s rn5.chr7 143065623 640 + 143501887 TTTTGTTTGCTGCATGTCTCTGGAAGT---TGCTGTCATTGTCATCA----------------------------CCCTCCTGAGAGTCAGCAACTACTCCAGAGGCAATGCCATTTGGACCATAGTCCCCCAGTCTGATTCCCACTGTTCTGTAGAAATAGGTGGAGGTTGACTGTGGAATGAACTGTGCAAGCTTTTTATAGTCTGAACTCCTGC-TTTGGGATCATACCACACTGAAAAAGCTAAATCTAAAAAACATAATATTTGAAACATTTAAATATCACAAAACATTTCAAATATGTATGGAATCAAAACCAGAATGTTATTTTTGTTTCAGTGTGCTCTTACTCTCAAATGTATTTAAAGTTGAAAATTAAGTTAGTTTTTTAGTTTCCTTATTCTTTTTAAATTTTAAATTTCTTTGtttatttatttattcactttacatccaggtatcagc-ccccacccccAAAGATAAATTCTTTAAATAGGAATACACATGAGTAGGGACCCCAAATCCCAAGTCTTCATG--acttgttgaactgtgttcatagcagctttatttgtaatagttaaaaactggaaacaacctagatgtccttcaacagaagcacagagaaataaaatattgtacatttacacaacagactattacttagctgtttaaaaa i rn5.chr7 C 0 I 6417 a score=0.000000 s mm10.chrUn_GL456366 6580 9834 + 47073 tatgacattaaacatttgtaggcaaatggatgtaactaggaaaaaaacccatcctgagtgaggtaacccagacccagaaagataaacatgctatgtactcatttataaatggatatcagctattaagtaaaggataatcatgctacaatccacagacccagagatgctaagtaaaaaagagggctcaaagggaatgcatgtttctccctgggatgggggaaattcaagagattttgtgggtggactgggggcaggtggggatgagaagaggagggaACttttaattaatttataatattagttatttgaaaatttGAGCACCACCAAGGAAATGAAGAACTTGCCTTTTGTCTTATCTGCCAGAATCCAAGGCATTCTTTCTCTGGAAATTGACTGTCCAGCTCTGCCAGAGAATTAGCctttcttcaacaccccatattgttatctcatttgtgaacacctgaggtagtccctccctggaaatccattggccacattggccagggaatcaggtaagtgttgagtattgtgatgctaagttcagccccccaggacctggagcccacaggtggaccttaatgccactatgtgaccttggccccaaattatttctgattggtaaagatgtcatcagccaatagctaggcacaagagatagagatggggtttaggattcctgggcttggaatgggaggagaatcaagagagcaaaagaaggtggaggaggaagatgctatgggttcagttgagtcatgaaaacatggccttgatggctgggcaattgtagttaagagcaactcagatgacatatagtaagtaatagctcagggttatcaataggagagtagattctaataacatagagggtagatatctgccaagctcttctgctgattatggcttattgccagtataaggttgtgtgtgtctgtgtttttccaggaactaaatggtcaaaggtgggatagaaaccccagattggaattaaaaatttcaataacaGGTAAGTGATtttaattcttcttcccacacttcaaaactagttcccaagttttatctccagcttggtagtagaccactttctgcaacctcttcttttctgcctccaattcccaaggaactaagcagatcctCTCCTTAGCCTTCTTTATTCTATCACTTTGACTACTTGCCCACACTTAAGATACTCTATCCCTGGAAATTCTCAGGCCTTGTTGACTAGGCAATCAAATCATTTTTGGCAAAACTACctttcattcttcctgtgaatcctctcaaccctgccttctagcccatctttatttctgtgtgtgaacttctaagacctaagaacaagctctgactagcatccccagtggtcacacttggcaggagcatagagtagtccctaacaggaaacctacagctatcacacactcaagatctagagatgcaacagaaaccaaggaatgtaaaatggacctgatgatcaaagaccaggtatcagtaccgtgaattacaatcattccaaaggctggattattatctggataccactataacaaacacatgaacaatcaaatggacattatgtctccagacttctgctgcatccaagaaaaacaccataccccaaggataaacatcatatctgagtaaaagtatgaaaaatatattccaagcacatagactcaagaaacaagcttgtacaagcatttaaatatcagacaaatatagactttaacctaaaacttatccaaagagatagggaagaacagcatatacacatcaaaggaaagtccatcaagaggatattataattctaaagtttagattaaataatatgttgaatttcacacagtgatagtgggtgatttcaaaatgggaaaatattttttttcactgactctacatctgatagaggggtgatccttaatatatatatatatataaaactggtcatcaaaaaataaataaccaattgaaaatggggtacatattgtcaaaagatgaaatacaaatcctgaagaacactGAagtgttttactgttgtgaacagataccgtgaccaagtaaagtcttataaaaaaaaacatttaaatcggggttgtcttccaggtttagaggttcagtcctgtgggaagccacatgtgccgttgcagagtggcactgactactggctggccaccacgcataagtttggacaaacaaccaatgtgtacatatgcagtaaagttttttgcaaagacactgcctggcccgggcatgataatgaggctttgggagtataaccaatcagatgtgagacatgcaaatgaggtatgataatgaggctctgtgaggtacagagagagagagtagccaatcagatgaggaacatgcaaatgaggcttagtgcataaccaatctgggtgtgagacacgcctctcctaggcctatataagcagcaccagttctgggctcggggtctcttcacctctgcaatcaagctctcccaataaatgtgtgcagaaggatcctgttgcagtgttgttactgctggccagtccagcgcgcagaagacagtccattatcatcaaggtgggagcctggcagtatccaggcaggcatggttcaggcagagctgagagttctatgtcatcattcaaaggcttctagtgcaagactgacttccagatactagggtgaaagtatcaaccccacccaaactgtgacacacctattctgaccaggtcacagctattccatcaaggccacacctccaaaaggtggcacaccctggtctgtcttagtcagtttttctattcatgcacaaacatcttgaccataagcaagttggggaggaaagggtttattcagcttacacctccacaccaaagggagtcaggactggaactcaagcaggtcagaaagcaggagctgatgcagaagccatgaatggatgttcttactggcttgcttcctctggcttgctcagcctgctctcttatagaatcaagactaccagcccagagatggcactacccacaagaggaactcccacctgatcactaattgagaaaatgccttgcagcttgatcttgtagaagcatttccccaactgaagctcctttctctgtgataactccagcctgtgtcaagttgacacaaatctagcgagtacactggtccaagaatatacaaaccatcacTGaatgcaaatcaaaactacattgagatttcatctaacaactgtcagaatagccaagatcaatgaaacaaatgacagcttatgctgcaatgatctgtgattctgcaatgtgatgaaaatcaatgtgctggttcttttgaaagcttggaatacatctacctcaaaatATCTTGGGCCTTATTCAGCCAGATACTGAGGCCTAGTGAGGAAGTCTGAGCCATTGGCTCGAGTTTAGAGACCTGTCTTGCTCACTTCCATGCTGGAGCGACTCAGCATGACCTGCTTAAGCCTGCCTATGAATAGCTACTTCTGATGTAGAAAAACTTTATTGGCTCTGTCAGTCACCTCATACCCTCTGTCACTCTTCCCAGAACATCTGATCTTACCAAAAATCCTCACCTCCTTCCTCAACCCTGTATAAACAAAAGACTGAGAAGATTCCTGGCATGAGTGTGTTTGTTTTGGGCCATCAACACTCACCATCCAGCTTAGCCATGGAGAGACTCGAGACTCGGCTAGACTGGGTTTTTTCCACGCACATGGACCTGCTGGCAGAAATCCAGAAAAAAAATACAGTTAAggcatatacccaaagtatatttgatactattgcacagataattgtttaaccatgttcattgctcttcttcataatagccagaaattggaaagaacctagatatctgtcaatgaaagaatagattaagaaaagtggtacttttacacaatggaatattactcaacagttaaaaaatattaaattcacaggtaaatgaatggatctagaaaaagtcatccagaagtaaaccagagtccagaggacaaatatggtatatattaacttatatatgaatattcgcttttcagtttttaatgaaattgcttcatctgtataaacaaagattagctattacataagggactagggggagaaagggatctcttatggaagggaaaattgaatatgtagttattgatggacaggatgtaggattaaatggagggggatgtataaagaggataagagaagaaatacagggagggacagctagaactgagggctaaccaaattgaaacccatgccatgggaaagggccaatttctgaaactattaatgatgctctgttatacttgtagacaggatcctaacataactgttctctaagacgttccagccaacagctaatgaaagtagatgcagagagctacagccaaacattagatggagctcatgatttttctgggaggattgagggaccctaagagggtagcaactccacaggaatatcaacagagtcaactaacctggTTAGCAGCTCACTTTAAATGGGGTGTTTGGCCCCGTCCTTGCTCTCTCATTCCTTTGTTCTCTTACCTCTCACTTCTCTCACTCCTCTCTCATCTTTGTTTGTCTTCACCTTtctcctttcctcttctctcctcccctccccctccccttcccctcccctcctttcccctcccctccccttccctcccgtcctctcctctcctttcctctcctctcctgatcgcaaatttaagattttctactcacccatatattgttaattaagattattacaagagtaatcatcttatgagagcactaatacagctctctgtgaccatacagccatacaaagctcagagcagcctcagcagggcttgtgtgactttcttttgtcttacaaatgatgcctaaggaagctcttgaaacttgcctctccctgcctccagggaaattttgttttagctaaacaaacagtgttgcagatctatccagatgttgttctaaataaagttctaattcaaagtttatagaagggtcaatcagactgtagaacttataaaggcattacaatctggcttgcctacttcatgtaaagttattataggtttaaaggttcgtcttattttccccttacatgataaagggtttgcttctagtgaactggtaatcactggaaaattttgcctctaggtatggctaatatagctttacattatgtaagaaaactttttattgtctctgcttctatacaagaagctaagagttttaatctttcagtgtatattgtttcctaagtggaaagtattttattaactaatgcttctcaagggaagtttaccttaaatccttgctctcccccaaaagattcaaagacaatatctttttattacttagggttttagtttactacaaaaggttttacaaaaaataaagcttttattattgttattaagcatattcattggcaactaaatattagctgtgcccaagacaattccttggccagaaaaaaaaaaaaaaaaaaaccattgtaaagtcatttttctcatcctcccagccgatcgattgttggcctaacccaactagctgctggctgctgtggggcggagccttgagacacacagcttccccctgtttcagcacaaataatctagttgtgtgctgtagatggtgttttaaaatgctgaacaatcaaaccttaatttgtatattaatagtcaatgctatatctctgagctcacaattgcttaagattgttcgtccctcagatactattaattctcaaagttacaattgcttatgcatatacaactcataggaaaaaatgctgtccttttaagaaggcggtttttagacatttattaaattgtcctaattgcctggacattttaaaacaatgcaaggataaatttatatctcagacagtctataagtcgtccatataaaatagattgaatatataacctcattctttatatattcataacagttatggtttaagataatattttagtattgttaaaattgtgcatgtataattctttccttttagtgtcctcagttactacttgtttccacataatagtgttaattcttgaggacttttacttaataatttgctacaaatgaatgttcttatttctagttaatatacaaataaattatgcacatgtgactcttaataacttttcaagctttctagttacaaccactcccttaagaaaaatgattgaaagtgcaattagtcactgcccctttacagccaagtatttaaaatgttttgtcaacaagttattaatttgaaagattagatattgtgaaactttaaaactttagcttcttaaaagacaaagaaggggaaaattgtatccctgtacatactatttagtgcattcccatgcacactatttaaatcatacctttattttcaaattttgaaatttaaatgtcaaagaatttaataaatgctttatagtatcttaaaaggatctacttattggcttatagattgatcctaaacagctgccttattagggaagggaaaaacaggttctctccacaggacgctgcaaacgcatgatgattaattcgtgtgacaagctggcaggtaagttgactcagtgccctgattgaaatgactaagaaagtaaattagattcatgttttagatccatccttgcttaccatttttccagtttagactagcttcaagccttttaactttatggcaatagtacatcagagactgtatattctgacttagtgagattagtcatttaatagagtcataatgatttttctcttttcttcagtgtgaccagtcattctaactcaatcttagactggtctaatattcagtccaatatcagagagattcctattgtagataactatattcttaattacctagtaaagttaattcagagcatatcccccacttccagagagtctctggcctttttactattctaaaaccagcccagagactgagattgtgccttgctaatttacaactgaataaagtacctggtcttccccaaaagaagctttgcattgctattttctcattgtctagatctcattttttttcaagcaggtcaatcaacatcctcccgccagactgcagcgggcatgcatccctgcccccaagagcttacaggtggcgactgctattttcattcaaaagacattccagcacgttttgtggctttaggtctgatttcagatttaggtttactatgagggctaaaaaggcagatatttcaaatattagaaaaagagattggtttttattctgatagacgggcttagtcccttagctggtctctggttttccacccttgctgttactacaaagtccccttagttcctcaggctgtgggaataacagagatgaagagggtgacctccagctcctaatttagccacaaattgtggtgttactaatgacataattcttgttgaagccttgctaaatctgaggttgacaattctcctttaggagctgcacattactcagaactgtgcatactgattcgtgatcacacgaatacagtatgggtaccgcttgggtgcagaaatttactgcaggggaaggtccagcttgaccatttctgggttccccgtttggatagagtttggtatctagttccagttccagccaaaaatatctttctaaggctctacctcccctccccaaaagataccaagagccacaagtgtgggtcatgacagcacccacgggaggaatcgggtcaatttccccccaagcaaaggttaaagcccactcatctatggatgaaaacatcatttgatcacctcagttaagtgtggccttattaaacttaattaatgggggggggggagaggttggagaccatactgttagaaggggcaagcctttcacagcctctcaccctaaaaagccagttggccttgtactatggagccagtcttaaccccctcctccctgttcccccgcctgtcatccaagaATGCATAgaatatccacgtactctccttcagtgttattcataatatagtgcctttcaaattcataCAGACTACTTAAaattcaactaggaagttacctattcagtactaattagcattataaagtcagagcctacagctcaaggctagtctactagttgtttactaggacagaaaggacagtcttatccagatatggtttagcataagaaaagttaagaaatcccattgagacaggtttcttcATTaggacctaaaattcaggcagaactatagagcataaataaattttatgcctcagcccagccttttcttttttatattaacaacagggaggaGAtgtagcctcccctccccagcctgaaacctgtttgctcaggtttcagtattagagagcatcggggcagagcttgccaccctaccatcctgccactcccactgcctgccttctagctgttccggagccatcacgtgttcacctgcaaccttactccaagatgatttggcgggaatcgggccccttcccctccttcataactgtgtcggaaaatagtaaaattgggctttgatcagaattctaacttagctacatctttctctcacccgcctagctccctcttctcttccaggtttccaagatgcctttccagactaaaacccagacatgtgagccactggtcagacacaacaaagaagagaccagcatcactgaggtgacatcttctgggaagtgttttctgagagcacagaggctgtgttccagagatagccaaggtatcttggtacctcatgctgctgtgggacttggtaatgtgtaagagtcacccaggtgttactggttttgaaggcatgaaggggtcacgcagagcagctgaggctgggcactgtgagaggccatggaaggccattggtgaaggtgcagcctcagttgcaatagatggcccagaactgaagggttcatgcaaaggagttgaggctggtaccatgaagagagcctatgagaggctattgttgaagccaagtcacagtggaagaaagcagcattttggagatgccagtaccatgagatgaccaccaagatcagcagcagcagtggagtacaggcatctggagcctagaggaaaagctgtgtgctataaagggcatggctggagaagtgacccaagcccttggaggagcccagaagatcgtgagttggatcccagacatttgacagttggagagtgatttttgcttttgattgtgactgtgccctgatattttccctcttgaaggaagaaactgttttagtggagcacacagttaaagagacttttaattgtaaaaagactttggattttaaaagagatggatattttaaagagattgaaattttaagaatatgtaaagactgtggtacttttaaagttatttagatcttggggattaataagaactaaggggttgaggtttactagtgatgtgtttgtgtgtcaagttgacaaggggtcaattgtactggctagttttatgtcaacttgacacagctggagttatcacagagaaaggagcttcagttgaggaaatgcctccatgagatccaactgtaaggcattttctcaattagtgatcaaagggggaaaggcccccttgtgggtggtgccatctctgggctggtagtcttggttctataagagagcaggctgatcaagccagaggaagcaagccaataaagaacatctctccatggcctctgcatcagctctttctttctgacctgcttgagtttcagtcctgacttccttcagtgatgaacagtagtatggaagcgtcagccaaataaaccctttcctccccaacttgcttcttggtcatgtttttttgtgcaggaatataaaccctg e rn5.chr7 143066263 6417 + 143501887 I a score=21881.000000 s mm10.chrUn_GL456366 16414 345 + 47073 GAAATCATGATCAAAATATGCTGCAAAATATCTAATATTCAGGAAAACTTAAAGtataaataaattattatataattacaattagaaattaaaaaGACAATATTAACAATAAAAATGTTAATGCATATAATAAACTGTTATCATGCTGCTCACTATTAGGATTTATTTGAAAAACTGTCAATATTACCACTGAAGAACACACAGTAGGAAAAGTAATTGGTTAGATGAAATAAAATGAAGAGATAGCCAAGTGGTATTAATTGTTGAAGACACAA----ACTCATTATCATCCGTGTATACCATGTTCAATTGATTCAAT---AAGTGCAAGATAAAAAAGCCAAAATTATG s rn5.chr7 143072680 342 + 143501887 gaaatcatgatcaaaatatgctgcaaaatatctaattttcaaGACAATTGaaattataaataaattat---ataatta-------aaattaaaaaGATCATCTTAACAATAAAAATATTAATACATACAATAGACTTTTATCATGCTGCTCACTATTGGGATATATTTGAAAGACTGTTGACATTACAACTGAAAAACACACAGTAAAAAAAGTAATTGGTCGGGTGAAATCAAACGAAGATTTAGCCAAGTAGTACTAAATGTTGAAGACATGAACTTACTCATTATTGTCCATGTATACCATGTTCAATAGACTCAATGACAACTGTAAGAGAAAAAAGCCataattata i rn5.chr7 I 6417 I 457 a score=49975.000000 s mm10.chrUn_GL456366 16759 820 + 47073 AACAATTCTTTTAAAAATGTGTACTTTTTTAAAAATCTGGAAGTATACTAACATTGACAGAACAAAATGGAACATGGGATTGTTTTATCTCCAGAAGACAAAAAATTTCCTGTCAAGAAAATTCATATATCTGGCCTGATGTGGTGCCAAATTAGAGTGAAAGTTACAGAGATCAGAAAGGAAGACAATATATATA------TTCCCTCTGTTATGGTACAAAGTAAATTAGCTCCTCTGCTAAGGGGATGGCCATGTGCTCAGCAAGAGTCTTCTTAGTAGAGATTTCTGGGAAAATACCAGGAAGGCCACACATTAATGAAGAAAAAGTGATTTTAGAGAATTCTTAGCTTGTGTCCTATATGAGTG-----------------TAAGGCTCACATCACAATTTCACATCTCTTGACCTTGATAGTGTTCATCTCCTAGAGTTTCTGTGAGATTTAAATAAGTCTGTGGATTCTATAACATGGTTCTTGACATGTGTTTATAATATAAAACAACATAATTAATGGTGGCCTGATATTAAAGGGAAAAAA------TCAAAATAGAAAAAAA-GTTCATTAAGATCAAGGAAAATAGCAAATTCCCAGAAATACCCTG--AATAACAATAAAAGCAGATTGCTCCAGGAATGTAAAACATTTCTACTCTTGGTATAATCCAATAAGAGAAAAAATTCAGTTAAATATCAGAGATAAGCAGGTACCATGCTATATGCAGTTTATACTTACTACTGatttttattaaatttacaatatatctttaaa-----------------------------------------------------------------------------------atattCATCCTGCAAAAATGATGGCATTGAAATTGCTAAGGTAGCAACGAAATTGCAATACTTTGG s rn5.chr7 143073479 913 + 143501887 aataaTTCTTTTAAAGATGA---------TGAAAATGTG----TATACTAACATTGGCAGAATAAAATGGAACATGGAATT-TTTCATCTCTAGAAGACAAAAAATTTACTATCCTGAAAATTCATATATCTGCTTCAATGTGGAGCCAAATTAGACTAAAAGTTACAGAGATCAGAAAGGAAGGCCGTTTATATTACTTTTTTTCCTCTGATATGGTACAAAGTAAACCAGCTTGTCTGCTAAGGGGATGGCCATGCGCTCAGCAGGAGTCTTCTCAGTAGAGATTTCTGAGAAAATACCTGGAAGGCCAGACATCAATGAAGGAAAAGTGATTCTAGAGAATTCCCAGCTCATCTACTGTACAAATGCAAGTGTGATACATGGTCAAGGTTCACACCACAACTTCACATCTCTTTACT------GTGTTCATCTCCTACAGTGATTGTGAGATTTAAATAAGTC--TGGATTCTATAACATGGTTCATGACGTGTATTTAGAATATAAAACAATATAATTTGTGATGGCCTGATATTTAAGGGGAAAGAAAGAGCTCAAAATAGGAAAAAATGTTCATTAATATCAAATAAAATAGCAAATTCCCAGAAATACCCTGACAATAACAATAAAAACAGATTGCTCCAGGAATGCAAAACATTTCTACTCTTGATATAATCCAATAAAAGAAAAAATTCAGCTAAACATCAGAGATAAGCAGGCAGCATGCTACACACAGTTTATACTTTCTTCTGATTTTTATTTATTTCACAATTTATCTTTAAAATATTCATAGTGGGGGTTGGGgcctagcaaacgcaaggccctgggttcggtccccagctctgaaaaaaagaaaaagaaaaaaaATATTCATACCGTAAGAATGATGCCATTGAAATTGCTAAGGAGGCAGTGAAATTGCAACACTCTGG i rn5.chr7 I 457 C 0 a score=6079.000000 s mm10.chrUn_GL456366 17579 88 + 47073 CTTCTCTCATG---TTTACTTATTAAGTTGATTTGGAAAAAGAATAAGAAATTAATAATGATAAAAATGTGGACAAGACAAGGGTGTGTAT s rn5.chr7 143074392 88 + 143501887 CTTCTCTCATG---TTTACTCATTAAGTTAATTTGGAAAAAGAACAAGAAATTAATAACAATAAAAATGTGGCCAAAACAAGGGTATGAAT i rn5.chr7 C 0 I 36791 s monDom5.chr4 381434647 69 + 435153693 cttctgccttggaattgatatatagtgttgattctaagacagaagataagattttt----ttaaaaa----------------GTATAT-- i monDom5.chr4 N 0 C 0 a score=5467.000000 s mm10.chrUn_GL456366 17667 206 + 47073 GGATTCTGTCTCTCCCTCAACTCTAAAACTGTTTTCTTTCCTCTCTCCTTCTTCTTCTCTCT-TATTCACTTCCCCCTCCC--------ATTCTCCTAAAGTCTGCTCA------------CTCGTtctctctctc-----------tttccctctct------ctctctcctctctctctct-ctctctctctctctctctctctctctctctctc-tctctctctctctACATCTCCCTCCCTG s monDom5.chr4 381434716 243 + 435153693 GA---CTGGCTCTCTATCCACTCTATTGCACTTCTCTCTCTCCTCCCCTTCTTTTCCTCTCTCTGTTCCCTGCCCCCCCCCCATGTCTGGCTCTCTGTGTTTCTCCTCACCCCCCAAACGTCTCATTTTCTCTGTCCCACCCCTGAATCTCTCTCTCTGACTGGCTCTCTGTTCCCCACCTCTACTGCctatctctctgtccctgtctatgtcttccatctctctctgcctgtctctcccttcctg i monDom5.chr4 C 0 N 0 e rn5.chr7 143074480 36791 + 143501887 I a score=0.000000 s mm10.chrUn_GL456366 17873 9182 + 47073 AAGTATGTTTAGTTATGGAAGTAGAGAACGCACTGAATCCTGGATCCACATAAGGAGAGGCTTAGATGAAATGATCTTACCCAGTTTTCCATTGTTGAACAAATAGATAGAGGTATCTTTGGCATTGGCAGCAGAATCTGCAGAAGTAGAACTCAAGAATAAAAATTTGGTCTGAGATATAGACTCTATCTTTAGAAGGGTCTTGTACTCAGCTGAATACACCTTCCACATTCTAAATGCATCTATGCAATTCTGCCATAGGTTCAGTCCATCTGTAATTTTTCTTGTCTCCTTCTACATGATACTGCCATTTCTGGGACATGAAGAGGTTGAGGCTTCTACCATGGGCAATAAGATTGATGGAAAACAAAGACAAGACTCTTTCCCAGACATGAGCACAGAACAATCACAGTCCATGTGTTCCCACTTAGATTAGTACAGCCTAAAGACATTAAGAAATTCATCAGTTAAATACCCAATTCTCTAATCACAAAAGAGAAACAAACACTCTTTATAGCTGACATGTATAGCACTCCATGGAACAAAGCTTAGACCCCTGGATTTGTTGGACTCCTGTTAGCATCCTTATCTCATGATATCCTGCCATGCTGTCCTGATCCTTCACTCCATAGAAGCTTCTGGAACTGTAGTGTGATCATTCTCTGCAGAGGCAGCTGTTCTGTTTTCCACAGACAGTTATGCATTCATTATTTCAACTTATGATAGCTTTATATGACTTAATAACATTGTTTTAAAATTCTGAAAGTGCATTAGTTTTTCAAGGGAGAGAGAGAGAGGCAGCTTCCCATGAGACTCtgtgggaagccacatgtgccgttgcagagtggcactgactactgctggccaccaagcataagtttggacaaacaaccaatgtgtatatatgcagtaaagttttttgcaaagacactacctggcctgggcatgataatgaggctttgagagtataaccaatcagatgtgagacatgcaaatgaggtatgataatgagactctgtgaggtacagagagggagtagccaatcagatgaggaacatgcaaatgaggcatagtgcataaccaatccgggtgtgagacaagcctctcctaggcctatataagcagcaccagttctgggctcggggtcttttcacctctgcaatcaaactctcccaataaacgtgtgcagaaggatcctgttgcaggattcttgctggtcgagtccggcacgcgcaAGAagtggtgccgaaaaccccgggacaagaaacatcttcaggcacgagcgaagaccccctgctacagggaggattcagaactgcatcgcggagaaggagcggttaataaaggttccccgtaaaacagactgctgagaagggattcaactgcgtggatttcagaactcttcagcttgaggaacggaggtaccgtgtaagtgtaaagaaattaatgtaagtctctgagaggcatgctctcctacgaagtagatccattaattgtcgctgggattgtgctgcttgctttctttcttgccttaattttatgctattgccttaattgtcaccgccctgggcacaagtgtatctgctgggaataatttcacgtagataacgctttagtccaggacgatcatgggtaatggccagtctacgcccttagtagggtcggtgcaagccttgcttaaagaaaggggtttaaaaatttcggaaagcacagtgactggttttttgagagaaatagacagacttgctccttggtttgcccctactgggtcgctgacgctacctagttgggaaaagctgggaaaagatatagcaagagaggaagcagacgggaaagtgaaagcagggacaaggccattatggaaattaattaaggcttgtatccaggacaagaaatgtgagctagctgttaaggaaggacagcgacttttacaggagcaacaggaaagtatgtcagaaacagagagatatgaaaaagaaagcgtgcgcagaaagataagtaaagggagagaaataaaaggagaaaaggaaaagaaaccaaaatgtaaagatacaaaagatagcataaaaaataaagaacagaaaattaagtcaatttaccctcgtctcgaggactttgagtttgttagaattgtctagctcagaggattcggaactatcagcaggggaggaggaaaatttgaaggaggctgctgcgaagtatgaggcagaaagatctggtccaatagggaggagtatcagtgctcccccaccaacctctgccttatacagataagaaagcaattggctatggccactccttttgcactcctaaagggttgcaaaaaatatgtcaggcttttcctgtttttcaggatcatgctcaacagagatattatgagccaatatcgcataaacaagtgaaagagctagcagagtcagtaaggacctatggagttaatgcctcatttactcagtcccaaattgatagactggctcacaacgccatgactccttttgactggatgagtgtggtaaaggcatgtcttacgatgggacagtatctagattggaagtctatatggcatgatctgtgtttgagtcaggcctgtgctaaagctactgcaggtcaacaagcatggagctttgaaatgcttacaggtcagggtatatgggcaaacaatcaattaggatacccagtgcaggtctatgatcaaattaatcaggcagcagtgaaagcttggaaagcattgcctaatcgaggagaagtatctggtaacctgacaaaaattattcaggggattaatgagctgttctctgaatttgtggctcgcatgatggaagcggcaggatgtatatttggtgattctgaggccgcaatgccattaattgaacaattagcttacgagcaatgtaccaaagaatgcagaaatgctatcacaccatggaaagggaaaggaatacaagcatggatgaaagcctgtagagaaataggaggacctctttcaaatgcagggctggctgccacagtcttgatggcgcaaacaaaagaaataacctgctataattgtggacaaacaggtcatttgcaaaagcagtgtacaaagggtagaaagagtaggtttgaaaagacagaaccaggtatttgcccaaaatgtgggaaaggaagacattgggcaaatgaatgtagatcagtcagagatataaaaggaaggccaataactcagtttaaggtgcaacagccaaaaaacggagtgaggggcccccatccccagggcccccaaatgtatggggcatttcagaccacagtgtccatgaggccacccagagaccgaggagagccactccgggttcagcaggattggacatctgtgccacctccagagtaattcttacacctcaaatggggtgccagcctatttcatcagattttagaggtcccttaccaaaggatacagtgggcctactgttgggtaggtcctcttctgctttgaaaggattggtaatacatcccggagttatagactcagattatgagggacaagttatgattatgtgttctgcaccccgaggtattgtagccatttctcctggagatcacattgctcaattgctgattctttctagtttgcataacatgttccctagtggccaggactcgcgaggagataagggactcagttctacaggaactaatgtggcctacatatctttagatttggataatcgtcccactttacaattacaaatagaaggaaaaacctttcaaggtataatggatacaggagcagataaaagcattatatctagtaagtggtagcctgcttcttggcctgttaatcaatcgtcacatagcttacaaggattgggatatgaggctaccccaactataagtgcaaaatccttacaatggaaagataaagaaggaaggacagggctttttcaaccttatgtactccctttacctgtaaacttgtgggggagagatgtgttatcagctatgaactttatactaactaatgactattctcaaaaaagcaaggaaatgatgaaaggaatgggatatatacctggactaggtcttggaaaaaattttacaaggtagaatttcaccagttaaagccacagtaaaggcagacaagaaagggctgggttttttctaggggccactgaggagcctttgcccattccgtggcatacggaggacgcggtgtgggtgcctcagtggcctttaccctctgagaagttaaaagcagctaaagaattagtacaagaacaattagacctgggacatgtggaacccactcaatcaccctggaatacccccatttttgttgtaaagaaaaagtcaggtaaatggagattgttacatgacctaagagccattaatgcacaaatgcaagttatgggtcctgtacaaaaaggactccccctactctcagctctacctaaggattggagaattatagtagtagatattaaggattgtttcttttcaattccattaaagaagaaagataaacctagatttgcattcaccttgccttctattaatcatatggaacctgataaaaggtaccaatagcgggtattaccccaaggaatggcaaatagccctaccatatgtcagttatatgtagaaaaagctttgcaaccggttagggatggtttcccctccttaaaaatttgtcattatatggacgatatagtgatttgtggacccgaagaagaaagtatacagcaagcttatggcttgcttaatgaaactttaaaaaataatggcttgattattgcaccagaaaaagtacagcagtctaatgttagtcattttctaggagccactattactttatgatgtgtcaccccaaaagattagtataagaaaagatcatctaaagattttttgattttcaaaaattattaggagatataaattggattagacattatttaaggatccctacttcggaattaaaatctttatttcaaattttagaaggagaatcacatattacctcattgagacaattaacacctgaggcttctgatgttcttaggaaagtggaaaaagcgatccaaacagcacagttaactcgtataaatgagcaagaacctttgtgcctatgcatattacgcaccatcaatctgccagctgctgtgttatggcaaaatggtcctttagtatggatacatccacatatatcccctaataagactatagagcattatcccaccatggtagcaaatatggcccacaaagggataaaaacttcaattactcactatggaaaaatgcctgatagcataattgtcccttatactgtcgcacaaacgcaaatattgtgtgctactatagatgaatgggccattcttagatgcagttattctggtttaattgataatcattatcctaaacatccgttattacattttatgttattacatccagtaatatttccaaaggtaacggctaatacccctataaagggagccattgatatttatacagatggatccaaaacaggagttggaagttatgtaatcaatgaaaaggctgtaaggttgcaatttacaccaggagcccctcaattggtagaatgtttggtggttttagaagtctttaaaagatttcctatgcccataaatattatctctaattctgtttatgtagttaatgcggttttagcattagagactgccggaaattttaagcagtctagtccagtgtctgaacttttgatgaaaatacaaaattgtattttgatgcgtgagcatcccttttatattcaacatattagagcacatacatcattacctggacctttggttaagggaaatgcaattgctgactcagccaccagagacatggttttcctattacaaaattctatagaaagtgtaaagaaatttcatcagctttatcatgtccctgcttctacattacgacaaaagtttaagctcacacgaaaagaagcccgagatattgtcctaccgtgtggtaaatgtgtagaatttgttaatgcaccttccgtgggtgttaatcctcgcggattgcgatccctagatgtttggcaaatggacgtcacgcatatcccatcttttgggaaattacaatatgtacatgtatccatcgataccagttctggtgtcctacatgcctctcccttgacaggggaaaaagcagttcatgtcatatctcactgcttagaggcttgggctgcatggggcaagcccctagtgttaaagacagataatggtcctgcatatacttcttctaaatttagccaatcttgcaaacaaatgcaagtaaaacatattactggattgccctataatccacagggccaaggcataattgagagagcccatcgcactctgaaacaatatttgcaaaaacagaaagggggaatagaggctatgacgccaaagatggctctatcccttacaatatttactcttaattttttaaaattagatgatgctggaagatcaccagctgaaaggcatggacaatggtctcaatcgcccaatgaaatggtcaaatggaaaaatgtccttgataataaatagtatggcccggatcctatcttaatcagatcccggggagctatttttgtttttccacagggtgaagaaaatccactttgggtcccaacgcaactgacaaggaccgtgaaagagcaagatgaaccccatgatgattctcctgctcctgatgattgagaccttgataagtatacctttgtgggccatagtaagatcatggccagtacctttaccggtacattccaattcttctaccttgcctttattttttgcaacggaatgttatttggatgcgccttgtgcacgacaaactcaagagccacaggtgtataatagtactagttttcatttgaattatacactatgctttgtgcataatgtggataaaccttttacaccctgtatatttttaaagaaaaagattatctctaattgggcagatcccattagccaaaataaggtgagctctggagtgttgtttaatgctttaacgcaagttgctcaaggagcgcaatcaggctcaggtgatgttgaaaataatataacttcacctataaacatcaccactattatgataacgtaaaaggtgaccattcccaaaagatcatgatggcctgttggcaatgctactgctatatgcagcatgccttggtgtcatccggacctcgcatttcctatagttttttcaccttgtcaatcaaaaatttttcctcggaaggaaatagcaaagggttttgttttgtcacccccactagattttgctgtaatgaacgataaaggagatgctacagggaaagaaaatatttggccatattaccaatggattttaagcaatgaggcaggtgctagtaccagtctgtcagcctttgcattgctgactggaacctttcatgaaatattgaatgtttctgccactctttccaatacctctactcatttagataatgtgacaactaatagaattatcagaaatatgactacttctccagtagaagtttgtgtcaattctccatttttctttatattggctgaatttcaaaataatacagaatggttagattgtacaaatgtcacttgttttttgacacaatgctggaatggaaccaaattcttaagccttagtggttcatctaccaatctttgtccctgtgcctgttgaggcagatccagagaagttcccaataatgagtcttattcagcaaaagagaggttttggaatcacagctgccattgttacagccattgtggtgtccgcagcatcagcagttaccgcaggaactgctatggcccattaaattaatactgctgacaccataagtcagatagcagaaaaatcatctgaagcattgcttaccctgcaaagggtggattctcatatcgcctcagggttaatgttagtgaatcagagagtggatatgttacaacatgatatggaacagatgatggatgtcatacaaatgagttgtgtggcatccacatcacatgtatgcaatactcccaataggtacattaataattcttttattaaaagtacagacctatcgaattacctgaaggggaactggtcgcaggagctggagaggttgcagacgaggctgcagatacagatcctgaaccttaatgggaccagagtggaaccagtgaccctcggagactttacctcttggcttacctctgctttttcttactttaaggaatgggtggaagtgattttgtttggtgctgccatatgctgtggactggtgttcatgctctggttggtatgcaaattcagaacccaacaaaaacgtgacaaggtgattataactcaggcacttttagctattgaaaatggctcctcccctgaaatttggttatccatgctcaagaattagttggcatctgagttctctactcttgcactccacggcactgagatgagagagattcaaccatcattgatcaacccttgcacatcactgaggtttcctcattgcaagtgatagagtgatcatgatttcaccactaattcattttttggctggcctcttttgcagagttcgccctaggtcatttagcagttattgtcacacagcactgcagtatccagagacgggcaactttcctcgtgcacagtccaacctaagacatggggcccggtgggcgatagggttaccctatgatgagtaaggctgtgacattagaggaacaacctaaaacaggagccacggcggatgggcataattgcacaggcctagtccagcctctttttattaaacaaacagggggagatgtgggaagccacaagtgctgttgcagagtggcactgactactgctggccaccacgcataagtttggacaaacaaccaatgtgtcatatatgcagtaaagttttttgcaaagacactgcctggcccgggcatgataatgaggctttgggagtataaccaatcagatgtgagacatgcaaatgaggtatgataatgaggctctgtgaggtacagagagggagtagccaatcagatgaggaacatgcaaatgaggcttagtgcataaccaatccgggtgtgagacacgcctctcctaggcctatataagcagcaccagttctaggctcggggtcttttcgcctctgcaatcaagctctcccaataaacttgtgcagaaggatcctgttg e rn5.chr7 143074480 36791 + 143501887 I a score=155.000000 s mm10.chrUn_GL456366 27055 50 + 47073 cagtgtcgttcttgctg-gtcgagtctggcgcgcgcaAGAAGACTCGGTGG s sarHar1.chr6_GL864737_random 3654566 48 - 3706227 CAGTGGCGCCTTCCCAGAGGCCACTGCGGTACGCCCCGGGAGATCCAG--- i sarHar1.chr6_GL864737_random N 0 C 0 e rn5.chr7 143074480 36791 + 143501887 I a score=6.000000 s mm10.chrUn_GL456366 27105 5 + 47073 AGCAA s myoLuc2.GL429793 1276979 5 + 10587614 AGTGT i myoLuc2.GL429793 N 0 C 0 e sarHar1.chr6_GL864737_random 3654614 0 - 3706227 C e rn5.chr7 143074480 36791 + 143501887 I a score=427.000000 s mm10.chrUn_GL456366 27110 5 + 47073 CAGCG s micMur1.scaffold_20543 4941 5 - 11586 CGGCT i micMur1.scaffold_20543 N 0 C 0 s myoLuc2.GL429793 1276984 5 + 10587614 CGGTC i myoLuc2.GL429793 C 0 I 13735 s sarHar1.chr6_GL864737_random 3654614 3 - 3706227 --GCA i sarHar1.chr6_GL864737_random C 0 C 0 e rn5.chr7 143074480 36791 + 143501887 I a score=1824.000000 s mm10.chrUn_GL456366 27115 63 + 47073 TCCGCGGCCATCTAGCAGCC--TGTGAGAGGAGGCATGGAGGACTAGCAGGGCCAGGAGCATGGC s micMur1.scaffold_20543 4946 61 - 11586 CCAGCAGCAATCTTCTGG----TGTGACAGTCGTCATGGGGGCTCCACAGAGCAAAGAGGGTGGC i micMur1.scaffold_20543 C 0 C 0 s sarHar1.chr6_GL864737_random 3654617 65 - 3706227 CCCTTTGTAACCTTGTGGCTGGCGAGGAAGGGGCCAGGGGAAGTCGGGAGGGCTCTGCCCGGGGC i sarHar1.chr6_GL864737_random C 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=-7220.000000 s mm10.chrUn_GL456366 27178 35 + 47073 GGCGGGGC------------GCAGCAGAAGACTCCG----------------AGGAGTCCCAG s micMur1.scaffold_20543 5007 63 - 11586 AGTGAGGCCGTGTCTCTCGCGCAGCAGGAGTCGCCGCGGCCGGGGTGCGTGGAGGAGCCGCAG i micMur1.scaffold_20543 C 0 C 0 s sarHar1.chr6_GL864737_random 3654682 44 - 3706227 AAGAAGCTGGTGTG------CTAATTGGAGAACCTG-------------TGTGGGTTTTCCCT i sarHar1.chr6_GL864737_random C 0 I 1 s latCha1.JH128645 69821 36 + 405459 -GTCAGACC-----------TCAGCAAAGGATTCCA--------CTAATTGTACAT------- i latCha1.JH128645 N 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=-1056.000000 s mm10.chrUn_GL456366 27213 8 + 47073 ---CCGCTGAG s micMur1.scaffold_20543 5070 8 - 11586 ---CTGCCCAG i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156464 8 - 2194741 ---CCACTGAG i dasNov3.JH582505 N 0 C 0 s sarHar1.chr6_GL864737_random 3654727 5 - 3706227 ---CCCCT--- i sarHar1.chr6_GL864737_random I 1 C 0 s latCha1.JH128645 69857 8 + 405459 CTTCTGTT--- i latCha1.JH128645 C 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=-3750.000000 s mm10.chrUn_GL456366 27221 2 + 47073 -CA s micMur1.scaffold_20543 5078 2 - 11586 -TC i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156472 2 - 2194741 -TC i dasNov3.JH582505 C 0 C 0 s melGal1.chr4 30749503 1 + 74864452 -T- i melGal1.chr4 N 0 C 0 s galGal4.chr4 48928281 1 + 90216835 -t- i galGal4.chr4 N 0 C 0 s latCha1.JH128645 69865 2 + 405459 CC- i latCha1.JH128645 C 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e sarHar1.chr6_GL864737_random 3654732 0 - 3706227 C e rn5.chr7 143074480 36791 + 143501887 I a score=4055.000000 s mm10.chrUn_GL456366 27223 3 + 47073 TGG s micMur1.scaffold_20543 5080 3 - 11586 TGG i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_311440 159975 3 - 202772 TGT i echTel1.scaffold_311440 N 0 C 0 s dasNov3.JH582505 156474 3 - 2194741 TGA i dasNov3.JH582505 C 0 C 0 s sarHar1.chr6_GL864737_random 3654732 3 - 3706227 TGC i sarHar1.chr6_GL864737_random C 0 C 0 s melGal1.chr4 30749504 3 + 74864452 TGC i melGal1.chr4 C 0 C 0 s galGal4.chr4 48928282 3 + 90216835 tgc i galGal4.chr4 C 0 C 0 s xenTro3.GL173046 989363 3 + 1077291 TGC i xenTro3.GL173046 N 0 C 0 e latCha1.JH128645 69867 0 + 405459 C e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=19114.000000 s mm10.chrUn_GL456366 27226 5 + 47073 AGGAA s micMur1.scaffold_20543 5083 5 - 11586 AGAAA i micMur1.scaffold_20543 C 0 C 0 s proCap1.scaffold_48533 5527 5 - 16610 AGAGA i proCap1.scaffold_48533 N 0 C 0 s echTel1.scaffold_311440 159978 5 - 202772 AGAGA i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156477 2 - 2194741 ---GA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289834838 5 - 304825324 AGAGT i monDom5.chr5 N 0 C 0 s sarHar1.chr6_GL864737_random 3654735 5 - 3706227 AGGGC i sarHar1.chr6_GL864737_random C 0 C 0 s ornAna1.Ultra173 3742920 5 - 3935469 AGGGC i ornAna1.Ultra173 N 0 C 0 s melGal1.chr4 30749507 5 + 74864452 AGGGT i melGal1.chr4 C 0 C 0 s galGal4.chr4 48928285 5 + 90216835 aggGT i galGal4.chr4 C 0 C 0 s melUnd1.JH556597 794576 5 - 11523850 agGGG i melUnd1.JH556597 N 0 C 0 s chrPic1.JH584678 570423 5 + 1521786 AGGGC i chrPic1.JH584678 N 0 C 0 s xenTro3.GL173046 989366 5 + 1077291 AGGGC i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 69867 5 + 405459 AGGTA i latCha1.JH128645 C 0 C 0 s gasAcu1.chrIV 32330552 5 + 32632948 AGGTG i gasAcu1.chrIV N 0 C 0 s oryLat2.chr23 20959054 5 + 24050845 AGGAG i oryLat2.chr23 N 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=76742.000000 s mm10.chrUn_GL456366 27231 22 + 47073 AAGCAGGGATGCAGATGTGATG--- s micMur1.scaffold_20543 5088 22 - 11586 AAGCAACGATGTAGATTTGATG--- i micMur1.scaffold_20543 C 0 C 0 s proCap1.scaffold_48533 5532 22 - 16610 AAGCAGCGATGTAGATTTGATG--- i proCap1.scaffold_48533 C 0 C 0 s echTel1.scaffold_311440 159983 22 - 202772 AAGCCGCGATGCAGACTTGATG--- i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156479 22 - 2194741 AAGCAACAATGTAGATTTCATG--- i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289834843 22 - 304825324 AAACAACACTGCCAACTTGACA--- i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3654740 22 - 3706227 AAGCATCAGCGCCAACTTGATA--- i sarHar1.chr6_GL864737_random C 0 C 0 s ornAna1.Ultra173 3742925 22 - 3935469 AAACAGTGCTGCCAGTTTGATG--- i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30749512 22 + 74864452 AAGCTGCAGTGCAGGGTCAGCG--- i melGal1.chr4 C 0 C 0 s galGal4.chr4 48928290 22 + 90216835 AAGCTGCAGTGCAGGGTCAGCG--- i galGal4.chr4 C 0 C 0 s melUnd1.JH556597 794581 22 - 11523850 AGGCAGCAGTGTAGGATCAGTG--- i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1169350 22 + 2017131 AAGCAGCGATGTAGATTGGATT--- i anoCar2.chrUn_GL343257 N 0 C 0 s chrPic1.JH584678 570428 22 + 1521786 AAGCAGCGTTGTAGACTTGATG--- i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 989371 22 + 1077291 AAGCAGAGGTGTCGATTGGACG--- i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 69872 22 + 405459 AAGCAATGCTGCAGACTTGATG--- i latCha1.JH128645 C 0 C 0 s gasAcu1.chrIV 32330557 25 + 32632948 AAGCCTTGCAGCAGGATATGTCCCG i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959059 25 + 24050845 AAACCCAGCAGCAGAAAAGGTCCCG i oryLat2.chr23 C 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=-39069.000000 s mm10.chrUn_GL456366 27253 33 + 47073 GCAAAGAGA---CAGACGGATCGAAGTTCATTT--CCT--- s micMur1.scaffold_20543 5110 33 - 11586 GCCAAGAAA---CAAAAGGATCTAAGTTCATTA--CCT--- i micMur1.scaffold_20543 C 0 C 0 s proCap1.scaffold_48533 5554 33 - 16610 GCCAAGAAA---TAAACGACTCTAAGAACACAA--GCT--- i proCap1.scaffold_48533 C 0 C 0 s echTel1.scaffold_311440 160005 33 - 202772 GCCAAGAAA---CAAAAGGAACGAAATGCTCTG--GTT--- i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156501 32 - 2194741 GCCAA-AAA---CAAAAGGAACTAAGTTTATTA--GCT--- i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289834865 33 - 304825324 GCCAAGAAA---CAAATGGAAAGAAACCCATCG--TCT--- i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3654762 33 - 3706227 GCCAAGAAA---CAAACGGAAGGAAACCCGTCA--TCT--- i sarHar1.chr6_GL864737_random C 0 C 0 s ornAna1.Ultra173 3742947 33 - 3935469 ACCGAGAAA---CAAATGGAAAGGAGCCCATTA--GCC--- i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30749534 30 + 74864452 ATCAAGAAA---CCAATGAGAAAAACACAGCTT-------- i melGal1.chr4 C 0 C 0 s galGal4.chr4 48928312 30 + 90216835 ATCAAGAAA---CCAATGGGAAAAACACAGCTT-------- i galGal4.chr4 C 0 C 0 s melUnd1.JH556597 794603 30 - 11523850 ACCAAGAAA---CTAATGGGAAAAAGTCAACTG-------- i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1169372 32 + 2017131 GTCAAGACG---ATAATCAAAAGAAATCCATGTCC------ i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 570450 30 + 1521786 GCGAAGAAA---ATAATGAACAACATTGCACTT-------- i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 989393 33 + 1077291 GTCAGGAGG---ACACTGGAAATTCTACAATAT--CCT--- i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 69894 32 + 405459 GGAAGGAAGAGCCAATTAGAGAGCCATCTCCT--------- i latCha1.JH128645 C 0 I 1 s gasAcu1.chrIV 32330582 36 + 32632948 ACGAGGAAG---CTGCTCCTCAGGTGTCCCCGT--CCCAGT i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959084 36 + 24050845 ACGGCGAGT---CTGATCCTCCAGTGTCGCCCT--CACAGC i oryLat2.chr23 C 0 C 0 s danRer7.chr21 25801888 32 - 44544065 GTGAAAAAA---ATGAAGATCAGGAGCCTTCCT--CA---- i danRer7.chr21 N 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=11910.000000 s mm10.chrUn_GL456366 27286 7 + 47073 CCAA----TGG s micMur1.scaffold_20543 5143 7 - 11586 CCAA----TGC i micMur1.scaffold_20543 C 0 C 0 s proCap1.scaffold_48533 5587 7 - 16610 CTAG----TGC i proCap1.scaffold_48533 C 0 C 0 s echTel1.scaffold_311440 160038 7 - 202772 CCAA----TGC i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156533 7 - 2194741 CCAA----TGC i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289834898 7 - 304825324 CCAG----TAC i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3654795 7 - 3706227 CCGG----TTC i sarHar1.chr6_GL864737_random C 0 C 0 s ornAna1.Ultra173 3742980 7 - 3935469 CCGG----CGC i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30749564 7 + 74864452 CCAA----TCC i melGal1.chr4 C 0 C 0 s galGal4.chr4 48928342 7 + 90216835 CCAA----CCC i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26462154 7 + 69780378 CCAG----TTC i taeGut1.chr4 N 0 C 0 s melUnd1.JH556597 794633 7 - 11523850 CCAG----TCC i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1169404 5 + 2017131 --AG----TTC i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 570480 7 + 1521786 CCAG----TTC i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 989426 7 + 1077291 CACA----TGC i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 69927 7 + 405459 Ccaa----taa i latCha1.JH128645 I 1 C 0 s gasAcu1.chrIV 32330618 4 + 32632948 CCAA------- i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959120 4 + 24050845 CCAA------- i oryLat2.chr23 C 0 C 0 s danRer7.chr21 25801920 8 - 44544065 CCAAAACA--- i danRer7.chr21 C 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=8763.000000 s mm10.chrUn_GL456366 27293 2 + 47073 CA s micMur1.scaffold_20543 5150 2 - 11586 AA i micMur1.scaffold_20543 C 0 C 0 s proCap1.scaffold_48533 5594 2 - 16610 GA i proCap1.scaffold_48533 C 0 C 0 s echTel1.scaffold_311440 160045 2 - 202772 GA i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156540 2 - 2194741 AG i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289834905 2 - 304825324 AA i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3654802 2 - 3706227 AA i sarHar1.chr6_GL864737_random C 0 C 0 s ornAna1.Ultra173 3742987 2 - 3935469 GA i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30749571 2 + 74864452 GA i melGal1.chr4 C 0 C 0 s galGal4.chr4 48928349 2 + 90216835 AA i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26462161 2 + 69780378 AA i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 794640 2 - 11523850 AA i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1169409 2 + 2017131 AA i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 570487 2 + 1521786 AA i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 989433 2 + 1077291 TA i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 69934 2 + 405459 aa i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593254 2 + 7272499 CA i tetNig2.chr19 N 0 C 0 s fr3.chr18 3106733 2 + 8053132 CA i fr3.chr18 N 0 C 0 s gasAcu1.chrIV 32330622 2 + 32632948 CA i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959124 2 + 24050845 CA i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 82 2 + 1832 ca i gadMor1.CAEA01178453 N 0 C 0 s danRer7.chr21 25801928 1 - 44544065 -G i danRer7.chr21 C 0 I 1 e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=1145255.000000 s mm10.chrUn_GL456366 27295 90 + 47073 GTGACTTCAGTGACCCGGTTTACAAAGAGATCGCTATGACAAATGGTTGTATCAACCAAATGAGTAAGGAGGAACTCAGAGCTAAACTTT s micMur1.scaffold_20543 5152 90 - 11586 GTGATTTCAGTGACCCAGTTTACAAAGAAATTGTTATTACAAATGGTCATATTAATAGAATGAGTAAGGAAGAGCTCAGAGCTAATCTTT i micMur1.scaffold_20543 C 0 C 0 s proCap1.scaffold_48533 5596 90 - 16610 GTGACTTTAGTGACCCAGTTTATAAAGAGATCGCTCTCACCAATGGCTGCATTAACAGAATGAGTAAGGAGGAGCTCAGAGCCAAACTTT i proCap1.scaffold_48533 C 0 C 0 s echTel1.scaffold_311440 160047 90 - 202772 GTGCTTTCAGTGACCCAGTTTACAAAGAAATTGCTTTTACCAATGGTTGTATTAATCGAATGAGCAAGGACGAACTCAGAGCTAAACTTT i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156542 89 - 2194741 GTGATTTCAGTGACCCAGTTTACAAAGAGATTGCTATTACAAATGGTTCTATTAATAGAATGAATAAGAAAGACCTGCAAGCT-AACTTT i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289834907 90 - 304825324 GTGATTTCAGTGACCCAGTTTACAAAGAGATTGCTGTTACTAATGGTTACATTAATCGAATGAGTAAGGAAGAGCTCCGAGCTAAACTTT i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3654804 90 - 3706227 GTGATTTCAGTGACCCAATTTACAAAGAAATTGCGGTTACCAATGGATACATTAACCGAATGAGTAAGGAAGAGCTCCGAGCTAAACTTT i sarHar1.chr6_GL864737_random C 0 C 0 s ornAna1.Ultra173 3742989 90 - 3935469 GTGACTTCAGTGATCCAGTTTACAAAGAGATAGCTGTTACCAACGGGCACATTAATCGAATGAGCAAAGAAGAACTGCGAGCTAAACTTT i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30749573 90 + 74864452 ATGACTTCAGCGATCCCATTTACAAAGAAATTGCTATGACCAACGGCTGCATCAACAGAATGACCAGAGATGAGCTTAGGAATAAACTTG i melGal1.chr4 C 0 C 0 s galGal4.chr4 48928351 90 + 90216835 ACGACTTCAGCGATCCCGTTTACAAAGAAATTGCTATGACCAACGGCTACATCAACAGGATGACCAGGGATGAGCTTAGAAGTACACTTG i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26462163 90 + 69780378 ACGACTTCAGTGATCCGATTTACAAAGAAATTGCTATAACCAATGGTTATATCAACAGAATGACCAGAGAAGAGCTCAGAAGTAAACTCG i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 794642 90 - 11523850 ACGACTTCAGTGATCCAGTTTACAAAGAAATTGCCATGACCAATGGTTATATTAACAGAATGACCAGAGAGGAGCTCAGAAGTAAACTTG i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1169411 90 + 2017131 GTGACTTCAGTGACCCAATTTACAAAGAGATTTCTCTGACAAATGGTCATATCAATAGAATGAGCAGACCTGAACTTAGAGCTAAACTTG i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 570489 90 + 1521786 GTGATTACAGTGACCCAGTTTACAAAGAAATTGCTGTGACCAATGGTTACATTAATAGAATGAGTAGAGATGAGCTCAGAGCTAAACTTG i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 989435 90 + 1077291 GTGACTTCAGTGATCCAGTTTATAAAGAAATTGCCATTGCAAATGGTTGTGTCAATAGAATGACTAAGGATGAGCTGAAGGCAAAGCTTG i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 69936 90 + 405459 gtgaatttagtgatccTGTTTACAAAGAAATAGCAGTTGCTAATGGTTACATCAACAGGATGACTAAAGAACAACTTCGGAATAAGCTAG i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593256 90 + 7272499 GTGATTTTAGCCACCCTGTGTACAAAGAAATCGCTGTGACCAACGGACACATCAACCGCATGTCCCAAAACGAGCTGCGGAAGAAgttgg i tetNig2.chr19 C 0 C 0 s fr3.chr18 3106735 90 + 8053132 GGGATTTTAGCCATCCCGTGTACAAAGAGATCGCTGTGACTAATGGACACATCAACCGCATGTCCCAAAACGAGCTGCAGAAGAAgttgg i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524146 90 - 31749960 GTGACTTCAGCCATCCGGTGTACAAAGAGATTGCTTTGGCCAATGGCCACATCAACCGCATGACGAAGGATGAACTTCGGATCAAGTTAG i oreNil2.chrLG17 N 0 C 0 s gasAcu1.chrIV 32330624 90 + 32632948 GTGACTTCAGTCACCCGGTGTACAAAGAGATCTCCATGGCTAACGGACACATCAACCGCATGACCATGGACGAGCTTCGGATCAAGTTGT i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959126 90 + 24050845 GTGACTTCAGCCATCCGGTCTACAAAGAGATCGCTTTGGCAAACGGACACATCAACCGCATGTCCAAGAGGGAGCTGCAGGTCAAACTGT i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 84 90 + 1832 gTGACTTCAGCGACCCGGTCTACAAGGAGATCGCCCTGGCCAACGGCCACATCAACAGGATGACCAAGGATGAGCTGCGGGACAAACTCT i gadMor1.CAEA01178453 C 0 C 0 s danRer7.chr21 25801930 90 - 44544065 GAGAGTTCAGTGATCCGGTGTATAAAGAGATTGCATTGGCAAATGGTGCCATCAACCGAATGAACAGAGAAGAGTTGCGTGCGAAATGCA i danRer7.chr21 I 1 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=104698.000000 s mm10.chrUn_GL456366 27385 6 + 47073 CAGAAT s micMur1.scaffold_20543 5242 6 - 11586 CAGAGT i micMur1.scaffold_20543 C 0 C 0 s tupBel1.scaffold_4168.1-100339 83489 6 - 100339 CAGAGT i tupBel1.scaffold_4168.1-100339 N 0 C 0 s proCap1.scaffold_48533 5686 6 - 16610 CAGAAT i proCap1.scaffold_48533 C 0 C 0 s echTel1.scaffold_311440 160137 6 - 202772 CAGAAT i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156631 6 - 2194741 CAGAAT i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289834997 6 - 304825324 CAGAAT i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3654894 6 - 3706227 CAGAAT i sarHar1.chr6_GL864737_random C 0 C 0 s ornAna1.Ultra173 3743079 6 - 3935469 CCGAAT i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30749663 6 + 74864452 CGGAGT i melGal1.chr4 C 0 C 0 s galGal4.chr4 48928441 6 + 90216835 CGGAGT i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26462253 6 + 69780378 CAGAGT i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 794732 6 - 11523850 CAGAGT i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1169501 6 + 2017131 CTGAAT i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 570579 6 + 1521786 CAGAAT i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 989525 6 + 1077291 CAGAGC i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 70026 6 + 405459 CAGAGT i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593346 6 + 7272499 cagagc i tetNig2.chr19 C 0 C 0 s fr3.chr18 3106825 6 + 8053132 cagagc i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524236 6 - 31749960 CGGAGC i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32330714 6 + 32632948 CAGAGC i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959216 6 + 24050845 CTGAGC i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 174 6 + 1832 CAGAGC i gadMor1.CAEA01178453 C 0 C 0 s danRer7.chr21 25802020 6 - 44544065 CAGAGC i danRer7.chr21 C 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=29729.000000 s mm10.chrUn_GL456366 27391 4 + 47073 ---TTAA s micMur1.scaffold_20543 5248 4 - 11586 ---TCAA i micMur1.scaffold_20543 C 0 C 0 s tupBel1.scaffold_4168.1-100339 83495 4 - 100339 ---GTAC i tupBel1.scaffold_4168.1-100339 C 0 I 14749 s proCap1.scaffold_48533 5692 4 - 16610 ---TCAA i proCap1.scaffold_48533 C 0 C 0 s echTel1.scaffold_311440 160143 4 - 202772 ---TCAA i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156637 4 - 2194741 ---TCAA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289835003 4 - 304825324 ---TCAA i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3654900 4 - 3706227 ---TCAA i sarHar1.chr6_GL864737_random C 0 C 0 s ornAna1.Ultra173 3743085 4 - 3935469 ---TTAA i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30749669 4 + 74864452 ---TCAA i melGal1.chr4 C 0 C 0 s galGal4.chr4 48928447 4 + 90216835 ---TCAA i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26462259 4 + 69780378 ---TCAA i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 794738 4 - 11523850 ---TCAA i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1169507 4 + 2017131 ---TCAA i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 570585 4 + 1521786 ---TCAA i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 989531 4 + 1077291 ---ACAA i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 70032 4 + 405459 ---TCAG i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593352 4 + 7272499 ---tgca i tetNig2.chr19 C 0 C 0 s fr3.chr18 3106831 4 + 8053132 ---tgca i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524242 4 - 31749960 ---TTAA i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32330720 4 + 32632948 ---TGCA i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959222 4 + 24050845 ---TGAA i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 180 4 + 1832 ---TGAA i gadMor1.CAEA01178453 C 0 C 0 s danRer7.chr21 25802026 4 - 44544065 ---TGAA i danRer7.chr21 C 0 C 0 s petMar1.Contig552 14234 4 + 64836 TTGT--- i petMar1.Contig552 N 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=56535.000000 s mm10.chrUn_GL456366 27395 3 + 47073 GCT s micMur1.scaffold_20543 5252 3 - 11586 GCT i micMur1.scaffold_20543 C 0 C 0 s proCap1.scaffold_48533 5696 3 - 16610 GCT i proCap1.scaffold_48533 C 0 C 0 s echTel1.scaffold_311440 160147 3 - 202772 GCT i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156641 3 - 2194741 GCT i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289835007 3 - 304825324 ACT i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3654904 3 - 3706227 GCT i sarHar1.chr6_GL864737_random C 0 C 0 s ornAna1.Ultra173 3743089 3 - 3935469 GCT i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30749673 3 + 74864452 ACT i melGal1.chr4 C 0 C 0 s galGal4.chr4 48928451 3 + 90216835 GCT i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26462263 3 + 69780378 GCT i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 794742 3 - 11523850 GCT i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1169511 3 + 2017131 GCT i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 570589 3 + 1521786 ACT i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 989535 3 + 1077291 ACT i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 70036 3 + 405459 ACT i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593356 3 + 7272499 gct i tetNig2.chr19 C 0 I 83 s fr3.chr18 3106835 3 + 8053132 gct i fr3.chr18 C 0 I 79 s oreNil2.chrLG17 15524246 3 - 31749960 GCT i oreNil2.chrLG17 C 0 I 92 s gasAcu1.chrIV 32330724 3 + 32632948 CCT i gasAcu1.chrIV C 0 I 131 s oryLat2.chr23 20959226 3 + 24050845 GCT i oryLat2.chr23 C 0 I 84 s gadMor1.CAEA01178453 184 3 + 1832 GCT i gadMor1.CAEA01178453 C 0 I 3 s danRer7.chr21 25802030 3 - 44544065 ACT i danRer7.chr21 C 0 C 0 s petMar1.Contig552 14238 3 + 64836 GGT i petMar1.Contig552 C 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e rn5.chr7 143074480 36791 + 143501887 I a score=16065.000000 s mm10.chrUn_GL456366 27398 2 + 47073 -TG s micMur1.scaffold_20543 5255 2 - 11586 -TG i micMur1.scaffold_20543 C 0 C 0 s proCap1.scaffold_48533 5699 2 - 16610 -TG i proCap1.scaffold_48533 C 0 C 0 s echTel1.scaffold_311440 160150 2 - 202772 -TG i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156644 2 - 2194741 -TG i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289835010 2 - 304825324 -TG i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3654907 2 - 3706227 -TG i sarHar1.chr6_GL864737_random C 0 C 0 s ornAna1.Ultra173 3743092 2 - 3935469 -TG i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30749676 2 + 74864452 -TG i melGal1.chr4 C 0 C 0 s galGal4.chr4 48928454 2 + 90216835 -TG i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26462266 2 + 69780378 -TG i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 794745 2 - 11523850 -TG i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1169514 2 + 2017131 -AG i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 570592 2 + 1521786 -TG i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 989538 2 + 1077291 -TG i xenTro3.GL173046 C 0 I 1625 s latCha1.JH128645 70039 2 + 405459 -TG i latCha1.JH128645 C 0 C 0 s danRer7.chr21 25802033 2 - 44544065 -TG i danRer7.chr21 C 0 C 0 s petMar1.Contig552 14241 2 + 64836 CT- i petMar1.Contig552 C 0 C 0 e oreNil2.chrLG17 15524249 92 - 31749960 I e gadMor1.CAEA01178453 187 3 + 1832 I e fr3.chr18 3106838 79 + 8053132 I e tetNig2.chr19 1593359 83 + 7272499 I e oryLat2.chr23 20959229 84 + 24050845 I e gasAcu1.chrIV 32330727 131 + 32632948 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e rn5.chr7 143074480 36791 + 143501887 I a score=22854.000000 s mm10.chrUn_GL456366 27400 4 + 47073 AAAC s micMur1.scaffold_20543 5257 4 - 11586 AAAC i micMur1.scaffold_20543 C 0 I 1 s proCap1.scaffold_48533 5701 4 - 16610 AAAC i proCap1.scaffold_48533 C 0 I 10904 s echTel1.scaffold_311440 160152 4 - 202772 AAAC i echTel1.scaffold_311440 C 0 I 1562 s dasNov3.JH582505 156646 4 - 2194741 GAAC i dasNov3.JH582505 C 0 I 1 s monDom5.chr5 289835012 4 - 304825324 AAAC i monDom5.chr5 C 0 I 3928 s sarHar1.chr6_GL864737_random 3654909 4 - 3706227 AAAC i sarHar1.chr6_GL864737_random C 0 I 5622 s ornAna1.Ultra173 3743094 4 - 3935469 AAAC i ornAna1.Ultra173 C 0 I 1050 s melGal1.chr4 30749678 4 + 74864452 ACAC i melGal1.chr4 C 0 I 1566 s galGal4.chr4 48928456 4 + 90216835 ACAC i galGal4.chr4 C 0 I 1589 s taeGut1.chr4 26462268 4 + 69780378 AAAC i taeGut1.chr4 C 0 I 1961 s melUnd1.JH556597 794747 4 - 11523850 AAAC i melUnd1.JH556597 C 0 I 2303 s anoCar2.chrUn_GL343257 1169516 4 + 2017131 ATAC i anoCar2.chrUn_GL343257 C 0 I 1308 s chrPic1.JH584678 570594 4 + 1521786 AAAC i chrPic1.JH584678 C 0 I 11512 s xenTro3.GL173046 991165 4 + 1077291 AAAT i xenTro3.GL173046 I 1625 C 0 s latCha1.JH128645 70041 4 + 405459 AAAC i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593442 3 + 7272499 -TAC i tetNig2.chr19 I 83 C 0 s fr3.chr18 3106917 3 + 8053132 -TTT i fr3.chr18 I 79 C 0 s oreNil2.chrLG17 15524341 3 - 31749960 -TGT i oreNil2.chrLG17 I 92 C 0 s gasAcu1.chrIV 32330858 3 + 32632948 -TGA i gasAcu1.chrIV I 131 C 0 s oryLat2.chr23 20959313 3 + 24050845 -TGT i oryLat2.chr23 I 84 C 0 s gadMor1.CAEA01178453 190 3 + 1832 -CAC i gadMor1.CAEA01178453 I 3 C 0 s danRer7.chr21 25802035 4 - 44544065 ACAC i danRer7.chr21 C 0 C 0 s petMar1.Contig552 14243 4 + 64836 AATC i petMar1.Contig552 C 0 C 0 e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e rn5.chr7 143074480 36791 + 143501887 I a score=-3040.000000 s mm10.chrUn_GL456366 27404 1 + 47073 -A s xenTro3.GL173046 991169 1 + 1077291 -A i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 70045 1 + 405459 -A i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593445 1 + 7272499 -A i tetNig2.chr19 C 0 I 1 s fr3.chr18 3106920 1 + 8053132 -A i fr3.chr18 C 0 I 1 s oreNil2.chrLG17 15524344 1 - 31749960 -G i oreNil2.chrLG17 C 0 I 1 s gasAcu1.chrIV 32330861 1 + 32632948 -G i gasAcu1.chrIV C 0 I 1 s oryLat2.chr23 20959316 1 + 24050845 -G i oryLat2.chr23 C 0 I 1 s gadMor1.CAEA01178453 193 1 + 1832 -A i gadMor1.CAEA01178453 C 0 I 493 s danRer7.chr21 25802039 1 - 44544065 -A i danRer7.chr21 C 0 I 636 s petMar1.Contig552 14247 1 + 64836 C- i petMar1.Contig552 C 0 C 0 e taeGut1.chr4 26462272 1961 + 69780378 I e chrPic1.JH584678 570598 11512 + 1521786 I e melUnd1.JH556597 794751 2303 - 11523850 I e ornAna1.Ultra173 3743098 1050 - 3935469 I e proCap1.scaffold_48533 5705 10904 - 16610 I e galGal4.chr4 48928460 1589 + 90216835 I e melGal1.chr4 30749682 1566 + 74864452 I e dasNov3.JH582505 156650 1 - 2194741 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289835016 3928 - 304825324 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e anoCar2.chrUn_GL343257 1169520 1308 + 2017131 I e echTel1.scaffold_311440 160156 1562 - 202772 I e sarHar1.chr6_GL864737_random 3654913 5622 - 3706227 I e micMur1.scaffold_20543 5261 1 - 11586 I e rn5.chr7 143074480 36791 + 143501887 I a score=128461.000000 s mm10.chrUn_GL456366 27405 7 + 47073 AGAGGAG s micMur1.scaffold_20543 5262 7 - 11586 AGAGGAG i micMur1.scaffold_20543 I 1 C 0 s echTel1.scaffold_311440 161718 7 - 202772 AGAGGAG i echTel1.scaffold_311440 I 1562 C 0 s dasNov3.JH582505 156651 7 - 2194741 AGAGGAA i dasNov3.JH582505 I 1 C 0 s monDom5.chr5 289838944 7 - 304825324 AGAGGTG i monDom5.chr5 I 3928 C 0 s sarHar1.chr6_GL864737_random 3660535 7 - 3706227 agaGGTG i sarHar1.chr6_GL864737_random I 5622 C 0 s macEug2.GL127885 3265 7 - 223658 AGAGGCG i macEug2.GL127885 N 0 C 0 s ornAna1.Ultra173 3744148 7 - 3935469 AGAGGAG i ornAna1.Ultra173 I 1050 C 0 s melGal1.chr4 30751248 7 + 74864452 AGAGGAG i melGal1.chr4 I 1566 C 0 s galGal4.chr4 48930049 7 + 90216835 AGAGGAG i galGal4.chr4 I 1589 C 0 s taeGut1.chr4 26464233 7 + 69780378 AGAGGAG i taeGut1.chr4 I 1961 C 0 s melUnd1.JH556597 797054 7 - 11523850 AGAGGAG i melUnd1.JH556597 I 2303 C 0 s anoCar2.chrUn_GL343257 1170828 7 + 2017131 AGAGGAG i anoCar2.chrUn_GL343257 I 1308 C 0 s chrPic1.JH584678 582110 7 + 1521786 AGGGGAG i chrPic1.JH584678 I 11512 C 0 s xenTro3.GL173046 991170 7 + 1077291 AGAGGTG i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 70046 7 + 405459 AGGTGAG i latCha1.JH128645 C 0 T 9174 s tetNig2.chr19 1593447 7 + 7272499 AGAGGTG i tetNig2.chr19 I 1 C 0 s fr3.chr18 3106922 7 + 8053132 AGAGGTG i fr3.chr18 I 1 C 0 s oreNil2.chrLG17 15524346 7 - 31749960 AGAGGAG i oreNil2.chrLG17 I 1 C 0 s gasAcu1.chrIV 32330863 7 + 32632948 AGAGGCG i gasAcu1.chrIV I 1 C 0 s oryLat2.chr23 20959318 7 + 24050845 AGAGGTG i oryLat2.chr23 I 1 C 0 s gadMor1.CAEA01178453 687 7 + 1832 AGAGGCG i gadMor1.CAEA01178453 I 493 C 0 s danRer7.chr21 25802676 7 - 44544065 AGTGGAG i danRer7.chr21 I 636 C 0 s petMar1.Contig552 14248 7 + 64836 AGTGGGA i petMar1.Contig552 C 0 C 0 e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e rn5.chr7 143074480 36791 + 143501887 I a score=866170.000000 s mm10.chrUn_GL456366 27412 65 + 47073 TCAAGGATGTTCTAAAGAAGAGACTGAAAAACTATTAC-------------------AGGAAGCAGAAG------TTG-A---------T----------GCTGAAAGAG s micMur1.scaffold_20543 5269 65 - 11586 TAAAGGATGTACTAAAGAAGAGACTGAAAAACTATTAC-------------------AAGAAGCAGAAG------CTG-A---------T----------GTTGAAAGAG i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_311440 161725 65 - 202772 TAAAAGATGTACTAAAGAAGAGGCTAAAAAATTATTGT-------------------AAGAAACAGAAG------CTG-A---------T----------GTTGAAAGAA i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156658 65 - 2194741 TATAGGATGTACTAAAGAAGAGGCTAAGAAACTATTAT-------------------AAGAAATAGAAG------CTG-A---------T----------GTTGAAAGAG i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289838951 68 - 304825324 TGAAGGATGTCCTCAAGAAGAGGCTTAAGAACTACTAC-------------------AAGAAAGAGAAG------TTG-A---------CCCA-------GCAGCGGGAG i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3660542 68 - 3706227 TGAAGGATGTTCTCAAGAAGCGGCTCAAGAACTACTAC-------------------AAGAAGGAGAAA------CTG-A---------CCCA-------GCAGCGTGAG i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 3272 68 - 223658 TGAAGGACGTTCTCAAGAAGCGGCTCAAGAACTACTAC-------------------AAGAAGGAGAAG------CTG-A---------CCCA-------GCAGCGGGAG i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3744155 65 - 3935469 TAAAAGATGTGCTGAAAAAGAGACTAAAAAACTACTAC-------------------AAGAAGCAGAAG------CTG-A---------T----------GCAAAAGGAG i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30751255 65 + 74864452 TGAAGGATGTGCTGAAGAAGAGACTGAAGAACTATTAT-------------------AAGAAGCAGAAG------CTG-A---------T----------GCAGAAAGAA i melGal1.chr4 C 0 C 0 s galGal4.chr4 48930056 65 + 90216835 TGAAGGATGTGCTGAAGAAGAGGCTGAAGAACTATTAT-------------------AAGAAACAGAAG------CTG-A---------T----------GCAGAAGGAA i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26464240 65 + 69780378 TGAAAGATGTACTGAAAAAGAGATTGAAAAACTATTAT-------------------AAGAAACAGAAG------CTG-A---------T----------GCAGAAGGAA i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 797061 65 - 11523850 TAAAAGACGTGCtgaaaaagagactgaaaaactattac-------------------aagaaacagaag------ctg-A---------T----------GCAGAAGGAA i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1170835 65 + 2017131 AAAAGGATGTATTAAAGAAGAGGTTGAAAAATTACTAT-------------------AAGAAAGAGAAA------TTA-A---------T----------GCAGAAGCAA i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 582117 65 + 1521786 TGAAAGATGTCCTGAAAAAGAGGTTGAAGAACTACTAT-------------------AAGAAGCAGAAA------CTG-A---------T----------GCAGAAGGAG i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991177 71 + 1077291 TTAAAGATGTGCTGAGGAAGAGATTGAAGAATTACTAC-------------------AAGAAGCAGAAA------CTG-AGACATGCATT----------ACATAAG--- i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 60879 65 + 405459 TAAAGGATGTATTGAAGAAGAGGTTAAAAAATTACTAC-------------------AAGAAACAGAGG------TTG-A---------T----------GCAGACAGTT i latCha1.JH128645 T 9174 I 7 s tetNig2.chr19 1593454 75 + 7272499 TAAAGAATGTAATGAAGAAGAGACTAAAGAGTCACTAT-------------------AAGAGGCAGAAG------TTG-A---------TGCAAACTGCTGCTGAAGGGG i tetNig2.chr19 C 0 C 0 s fr3.chr18 3106929 75 + 8053132 TAAAGAATGTCATGAAGAAGAGACTGAAGAGTCATTAT-------------------AAGAGGCAGAAG------TTG-A---------TGCaaactgcagctgaaggag i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524353 75 - 31749960 TGAAGGATGTGATGAAGAAGAGATTGAAGAGCCACTAT-------------------AAGAAACAGAAG------CTg-a---------tgcagacagcagcagagggaG i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32330870 75 + 32632948 TGAAGGATGTGATGAAGAAGAGGCTGAAGAGCCATTAC-------------------AAGAAGCAGAAG------CTG-C---------TGCAGTCTGCCGCCGAGGGAG i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959325 75 + 24050845 TGAAGGACGTGATGAAGAAGAGGCTGAAGAGCCACTAC-------------------AGGAAGCAGAAG------CTG-A---------TGCAGTCTGCAGCAGAGGGAG i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 694 75 + 1832 TGAAGGACGTGATGAAGAAACGGCTGAAGAGCCACTAC-------------------AAGAAGCAGAAG------CTG-A---------TGGCGTCGGTGGCGGACGGCG i gadMor1.CAEA01178453 C 0 C 0 s danRer7.chr21 25802683 75 - 44544065 TTAATGATGTCCTAAGGAAGCGCCTCAAAAGCTACTAC-------------------AAAAAGCAGAAG------TTG-A---------TGCATTCACCTGCTGCAGAAG i danRer7.chr21 C 0 C 0 s petMar1.Contig552 14255 89 + 64836 CCAAGGAAGTGCTACGGCAAAGGCTGAAGAGCTACTGTCAACTTGAGCACCGCAGGAAAGGTTCAGAGGACAGGTCTGCA---------T----------GCAGCGAG-- i petMar1.Contig552 C 0 C 0 e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e rn5.chr7 143074480 36791 + 143501887 I a score=-23467.000000 s mm10.chrUn_GL456366 27477 3 + 47073 AGC-- s micMur1.scaffold_20543 5334 3 - 11586 AGC-- i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_311440 161790 3 - 202772 GAC-- i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156723 3 - 2194741 AAC-- i dasNov3.JH582505 C 0 C 0 s choHof1.scaffold_32633 56 3 + 13532 AAC-- i choHof1.scaffold_32633 N 0 N 0 s monDom5.chr5 289839019 3 - 304825324 GAT-- i monDom5.chr5 C 0 I 2 s sarHar1.chr6_GL864737_random 3660610 3 - 3706227 GAT-- i sarHar1.chr6_GL864737_random C 0 I 2 s macEug2.GL127885 3340 3 - 223658 GAT-- i macEug2.GL127885 C 0 I 2 s ornAna1.Ultra173 3744220 3 - 3935469 GAC-- i ornAna1.Ultra173 C 0 I 2 s melGal1.chr4 30751320 1 + 74864452 --C-- i melGal1.chr4 C 0 I 4 s galGal4.chr4 48930121 1 + 90216835 --C-- i galGal4.chr4 C 0 I 4 s taeGut1.chr4 26464305 1 + 69780378 --C-- i taeGut1.chr4 C 0 I 4 s melUnd1.JH556597 797126 1 - 11523850 --C-- i melUnd1.JH556597 C 0 I 4 s anoCar2.chrUn_GL343257 1170900 1 + 2017131 --C-- i anoCar2.chrUn_GL343257 C 0 I 4 s chrPic1.JH584678 582182 1 + 1521786 --C-- i chrPic1.JH584678 C 0 I 4 s xenTro3.GL173046 991248 3 + 1077291 GAC-- i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 60951 3 + 405459 AAC-- i latCha1.JH128645 I 7 I 2 s tetNig2.chr19 1593529 2 + 7272499 -GC-- i tetNig2.chr19 C 0 I 1 s fr3.chr18 3107004 2 + 8053132 -gc-- i fr3.chr18 C 0 I 1 s oreNil2.chrLG17 15524428 2 - 31749960 -GC-- i oreNil2.chrLG17 C 0 I 1 s gasAcu1.chrIV 32330945 2 + 32632948 -GG-- i gasAcu1.chrIV C 0 I 1 s oryLat2.chr23 20959400 2 + 24050845 -GT-- i oryLat2.chr23 C 0 I 1 s gadMor1.CAEA01178453 769 2 + 1832 -GC-- i gadMor1.CAEA01178453 C 0 I 1 s danRer7.chr21 25802758 2 - 44544065 -GG-- i danRer7.chr21 C 0 I 1 s petMar1.Contig552 14344 3 + 64836 --CGG i petMar1.Contig552 C 0 C 0 e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e rn5.chr7 143074480 36791 + 143501887 I a score=-148731.000000 s mm10.chrUn_GL456366 27480 3 + 47073 --TCT s micMur1.scaffold_20543 5337 3 - 11586 --AAT i micMur1.scaffold_20543 C 0 C 0 s eriEur1.scaffold_342152 10875 3 - 90678 --AAT i eriEur1.scaffold_342152 N 0 I 12200 s echTel1.scaffold_311440 161793 1 - 202772 ---A- i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156726 1 - 2194741 ---A- i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289839024 1 - 304825324 --T-- i monDom5.chr5 I 2 C 0 s sarHar1.chr6_GL864737_random 3660615 1 - 3706227 --G-- i sarHar1.chr6_GL864737_random I 2 C 0 s macEug2.GL127885 3345 1 - 223658 --G-- i macEug2.GL127885 I 2 C 0 s ornAna1.Ultra173 3744225 1 - 3935469 --T-- i ornAna1.Ultra173 I 2 I 5 s melGal1.chr4 30751325 1 + 74864452 --T-- i melGal1.chr4 I 4 C 0 s galGal4.chr4 48930126 1 + 90216835 --T-- i galGal4.chr4 I 4 C 0 s taeGut1.chr4 26464310 1 + 69780378 --T-- i taeGut1.chr4 I 4 C 0 s melUnd1.JH556597 797131 1 - 11523850 --T-- i melUnd1.JH556597 I 4 C 0 s anoCar2.chrUn_GL343257 1170905 1 + 2017131 --A-- i anoCar2.chrUn_GL343257 I 4 C 0 s chrPic1.JH584678 582187 1 + 1521786 --T-- i chrPic1.JH584678 I 4 C 0 s xenTro3.GL173046 991251 1 + 1077291 ----T i xenTro3.GL173046 C 0 I 2 s latCha1.JH128645 60956 1 + 405459 --T-- i latCha1.JH128645 I 2 C 0 s tetNig2.chr19 1593532 1 + 7272499 ----T i tetNig2.chr19 I 1 I 1 s fr3.chr18 3107007 1 + 8053132 ----t i fr3.chr18 I 1 I 1 s oreNil2.chrLG17 15524431 1 - 31749960 ----C i oreNil2.chrLG17 I 1 I 1 s gasAcu1.chrIV 32330948 1 + 32632948 ----C i gasAcu1.chrIV I 1 I 1 s oryLat2.chr23 20959403 1 + 24050845 ----C i oryLat2.chr23 I 1 I 1 s gadMor1.CAEA01178453 772 1 + 1832 ----C i gadMor1.CAEA01178453 I 1 I 1 s danRer7.chr21 25802761 1 - 44544065 ----A i danRer7.chr21 I 1 I 1 s petMar1.Contig552 14347 3 + 64836 CCT-- i petMar1.Contig552 C 0 C 0 e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e rn5.chr7 143074480 36791 + 143501887 I a score=1130.000000 s mm10.chrUn_GL456366 27483 1 + 47073 G s micMur1.scaffold_20543 5340 1 - 11586 T i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_311440 161794 1 - 202772 G i echTel1.scaffold_311440 C 0 I 1 s dasNov3.JH582505 156727 1 - 2194741 A i dasNov3.JH582505 C 0 I 1 s monDom5.chr5 289839025 1 - 304825324 G i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3660616 1 - 3706227 G i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 3346 1 - 223658 G i macEug2.GL127885 C 0 C 0 s melGal1.chr4 30751326 1 + 74864452 A i melGal1.chr4 C 0 C 0 s galGal4.chr4 48930127 1 + 90216835 A i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26464311 1 + 69780378 A i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 797132 1 - 11523850 A i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1170906 1 + 2017131 A i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 582188 1 + 1521786 A i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991254 1 + 1077291 A i xenTro3.GL173046 I 2 C 0 s latCha1.JH128645 60957 1 + 405459 G i latCha1.JH128645 C 0 I 1 s petMar1.Contig552 14350 1 + 64836 G i petMar1.Contig552 C 0 C 0 e eriEur1.scaffold_342152 10878 12200 - 90678 I e oreNil2.chrLG17 15524432 1 - 31749960 I e gadMor1.CAEA01178453 773 1 + 1832 I e fr3.chr18 3107008 1 + 8053132 I e tetNig2.chr19 1593533 1 + 7272499 I e danRer7.chr21 25802762 1 - 44544065 I e oryLat2.chr23 20959404 1 + 24050845 I e gasAcu1.chrIV 32330949 1 + 32632948 I e ornAna1.Ultra173 3744226 5 - 3935469 I e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e rn5.chr7 143074480 36791 + 143501887 I a score=-6983.000000 s mm10.chrUn_GL456366 27484 1 + 47073 -C s ochPri2.scaffold_1488 226963 1 + 247752 -G i ochPri2.scaffold_1488 N 0 I 16513 s micMur1.scaffold_20543 5341 1 - 11586 -G i micMur1.scaffold_20543 C 0 C 0 s monDom5.chr5 289839026 1 - 304825324 -T i monDom5.chr5 C 0 I 6 s sarHar1.chr6_GL864737_random 3660617 1 - 3706227 -A i sarHar1.chr6_GL864737_random C 0 I 3 s macEug2.GL127885 3347 1 - 223658 -G i macEug2.GL127885 C 0 I 3 s melGal1.chr4 30751327 1 + 74864452 -A i melGal1.chr4 C 0 C 0 s galGal4.chr4 48930128 1 + 90216835 -A i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26464312 1 + 69780378 -G i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 797133 1 - 11523850 -A i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1170907 1 + 2017131 -A i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 582189 1 + 1521786 -A i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991255 1 + 1077291 -A i xenTro3.GL173046 C 0 C 0 s petMar1.Contig552 14351 1 + 64836 C- i petMar1.Contig552 C 0 I 3 e eriEur1.scaffold_342152 10878 12200 - 90678 I e oreNil2.chrLG17 15524432 1 - 31749960 I e gadMor1.CAEA01178453 773 1 + 1832 I e fr3.chr18 3107008 1 + 8053132 I e tetNig2.chr19 1593533 1 + 7272499 I e danRer7.chr21 25802762 1 - 44544065 I e oryLat2.chr23 20959404 1 + 24050845 I e gasAcu1.chrIV 32330949 1 + 32632948 I e ornAna1.Ultra173 3744226 5 - 3935469 I e proCap1.scaffold_48533 5705 10904 - 16610 I e dasNov3.JH582505 156728 1 - 2194741 I e latCha1.JH128645 60958 1 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e echTel1.scaffold_311440 161795 1 - 202772 I e rn5.chr7 143074480 36791 + 143501887 I a score=-72070.000000 s mm10.chrUn_GL456366 27485 4 + 47073 TGTG s micMur1.scaffold_20543 5342 4 - 11586 TGCT i micMur1.scaffold_20543 C 0 C 0 s pteVam1.scaffold_5102 16046 4 - 113820 TGCT i pteVam1.scaffold_5102 N 0 I 14312 s echTel1.scaffold_311440 161796 4 - 202772 CGTG i echTel1.scaffold_311440 I 1 I 2 s dasNov3.JH582505 156729 4 - 2194741 TGTG i dasNov3.JH582505 I 1 I 2 s monDom5.chr5 289839033 1 - 304825324 T--- i monDom5.chr5 I 6 C 0 s sarHar1.chr6_GL864737_random 3660621 1 - 3706227 C--- i sarHar1.chr6_GL864737_random I 3 C 0 s macEug2.GL127885 3351 1 - 223658 C--- i macEug2.GL127885 I 3 C 0 s ornAna1.Ultra173 3744231 1 - 3935469 T--- i ornAna1.Ultra173 I 5 C 0 s melGal1.chr4 30751328 2 + 74864452 --TG i melGal1.chr4 C 0 I 2 s galGal4.chr4 48930129 2 + 90216835 --TG i galGal4.chr4 C 0 I 2 s taeGut1.chr4 26464313 2 + 69780378 --TG i taeGut1.chr4 C 0 I 2 s melUnd1.JH556597 797134 2 - 11523850 --TA i melUnd1.JH556597 C 0 I 2 s anoCar2.chrUn_GL343257 1170908 2 + 2017131 --TG i anoCar2.chrUn_GL343257 C 0 I 2 s chrPic1.JH584678 582190 2 + 1521786 --TG i chrPic1.JH584678 C 0 I 2 s xenTro3.GL173046 991256 2 + 1077291 --CA i xenTro3.GL173046 C 0 I 2 s latCha1.JH128645 60959 1 + 405459 ---G i latCha1.JH128645 I 1 I 5 s tetNig2.chr19 1593534 3 + 7272499 -ACG i tetNig2.chr19 I 1 C 0 s fr3.chr18 3107009 3 + 8053132 -ACT i fr3.chr18 I 1 C 0 s oreNil2.chrLG17 15524433 3 - 31749960 -ACC i oreNil2.chrLG17 I 1 C 0 s gasAcu1.chrIV 32330950 3 + 32632948 -ACC i gasAcu1.chrIV I 1 C 0 s oryLat2.chr23 20959405 3 + 24050845 -ACT i oryLat2.chr23 I 1 C 0 s gadMor1.CAEA01178453 774 3 + 1832 -ACG i gadMor1.CAEA01178453 I 1 C 0 s danRer7.chr21 25802763 3 - 44544065 -AGT i danRer7.chr21 I 1 C 0 s petMar1.Contig552 14355 4 + 64836 TGTG i petMar1.Contig552 I 3 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e rn5.chr7 143074480 36791 + 143501887 I a score=35105.000000 s mm10.chrUn_GL456366 27489 3 + 47073 -GAC s micMur1.scaffold_20543 5346 3 - 11586 -GAC i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_311440 161802 3 - 202772 -AGC i echTel1.scaffold_311440 I 2 C 0 s dasNov3.JH582505 156735 3 - 2194741 -CGC i dasNov3.JH582505 I 2 C 0 s monDom5.chr5 289839034 3 - 304825324 -GAC i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3660622 3 - 3706227 -GGC i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 3352 3 - 223658 -AAT i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3744232 3 - 3935469 -GCC i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30751332 3 + 74864452 -GAC i melGal1.chr4 I 2 C 0 s galGal4.chr4 48930133 3 + 90216835 -GAC i galGal4.chr4 I 2 C 0 s taeGut1.chr4 26464317 3 + 69780378 -GAC i taeGut1.chr4 I 2 C 0 s melUnd1.JH556597 797138 3 - 11523850 -GAC i melUnd1.JH556597 I 2 C 0 s anoCar2.chrUn_GL343257 1170912 3 + 2017131 -GAG i anoCar2.chrUn_GL343257 I 2 C 0 s chrPic1.JH584678 582194 3 + 1521786 -GAC i chrPic1.JH584678 I 2 C 0 s xenTro3.GL173046 991260 3 + 1077291 -GAC i xenTro3.GL173046 I 2 C 0 s latCha1.JH128645 60965 3 + 405459 -GAC i latCha1.JH128645 I 5 I 14324 s tetNig2.chr19 1593537 3 + 7272499 -GAC i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107012 3 + 8053132 -GAC i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524436 3 - 31749960 -GAC i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32330953 3 + 32632948 -GAC i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959408 3 + 24050845 -GAC i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 777 3 + 1832 -GAC i gadMor1.CAEA01178453 C 0 C 0 s danRer7.chr21 25802766 3 - 44544065 -GAC i danRer7.chr21 C 0 C 0 s petMar1.Contig552 14359 3 + 64836 AGG- i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=1622438.000000 s mm10.chrUn_GL456366 27492 126 + 47073 -AGTTACTA-----------------------------TGACTACATTTGTATTATTGACTTTGAGGCACTTTGTAAAGAGGGGAA---CCCAGCTGAGTTTCTACATGAAATCATTGAGTTTCCTGTTGTTCTGTTGAATACACACACCTTAGAAATT s micMur1.scaffold_20543 5349 129 - 11586 -AGTTATTA-----------------------------TGACTACATTTATATTATTGACTTTGAAGCCACTTGTGAAGAGGGTAACACCCCCCCCGACTTCATACATGACATAATTGAATTTCCTATTGTTTTATTGAATACACATACCTTAGAAATA i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_311440 161805 126 - 202772 -AATTACTA-----------------------------TGATTATATTTGTATTATTGACTTTGAAGCAACATGTGAAGAGGGTAA---CCCGCCGGAGTTCATACATGAAATCATTGAGTTTCCTGTTGTCTTGCTAAATACTCATACCTTAGAAATA i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156738 113 - 2194741 -AGTTATTA-----------------------------TGACTA-ATCTGTACTATCGATTT------------TGAAAAGGGTAA---TCCACCTGAGTTTATACATGAAATAATTGGATTTCGTATTGTTTTACTGAAAACTCATACCTTAGAAATA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289839037 125 - 304825324 -GGTTACTA-----------------------------TGACTACATCTGTGTCATTGACTTTGAAGCCACCTGTGAAGAGGGCAA---TCCCCCCGAGTTCACTCATGAGATCATTGAGTTTCCAATTGTCTTACTGAACACTCACACCTTGGAAAT- i monDom5.chr5 C 0 I 1 s sarHar1.chr6_GL864737_random 3660625 126 - 3706227 -AGCTACTA-----------------------------CGACTACATCTGTGTCATCGACTTTGAAGCCACCTGTGAGGAGGGCAA---cccccccGAGTTCACTCATGAGATTATTGAGTTTCCAATTGTCTTACTGAACACGCACACCCTAGAGATC i sarHar1.chr6_GL864737_random C 0 I 11 s macEug2.GL127885 3355 126 - 223658 -AGCTACTT-----------------------------TGACTACATCTGCATCATTGACTTTGAAGCCACCTGCGAGGAGGGCAA---CCCCCCTGACTTCACTCACGAGATCATCGAGTTTCCAGTTGTCTTGCTGAACACGCACACGCTGGAGATT i macEug2.GL127885 C 0 I 3460 s ornAna1.Ultra173 3744235 126 - 3935469 -GATTACTA-----------------------------CGACTACATCTGTGTCATTGACTTCGAGGCCACCTGTGAAGAGGGCAA---CCCCCCGGAGTTCATCCACGAAATCATCGAATTTCCTATTGTCCTCTTAAATACGCACACCCTAGAAATT i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30751335 126 + 74864452 -AGCTACTA-----------------------------TGACTACATCTGCATTGTTGACTTTGAAGCAACATGTGAAGAAGGAAA---CCCACCTGAATTTATACACGAAATAATTGAGTTTCCTGTTGTCTTATTAAACACACATACCTTGGAAATA i melGal1.chr4 C 0 C 0 s galGal4.chr4 48930136 126 + 90216835 -AGCTACTA-----------------------------TGACTACATCTGCGTTGTTGACTTTGAAGCAACATGTGAAGAAGGAAA---CCCACCTGAATTTATACACGAAATAATTGAGTTTCCTGTTGTCTTATTAAACACACACACCTTGGAAATA i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26464320 126 + 69780378 -AGCTGCTA-----------------------------TGACTACATCTGTGTCGTTGACTTTGAAGCAACATGTGAAGAAGGAAA---TCCGCCTGAATTTGTACATGAAATAATTGAATTTCCTGTTGTCTTAGTAAACACGCGTACCCTGGAAATA i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 797141 126 - 11523850 -AGCTGCTA-----------------------------TGACTACATCTGTGTTGTTGACTTTGAAGCAACATGTGAAGAAGGAAA---CCCACCTGAATTCGTACATGAAATAATTGAGTTTCCTGTTGTCTTACTAAACACACATACCTTGGAAATA i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1170915 126 + 2017131 -AATTATTA-----------------------------TGATTACATTTGTGTTATTGACTTTGAAGCAACATGTGAAGAAGGAAA---TCAGCTTGAATTTACACATGAAATAATTGAATTTCCTATTGTCTTAATAAACACCCGGACATTAGAAATA i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 582197 126 + 1521786 -AGTTATTA-----------------------------TGATTACATCTGTGTTATTGACTTTGAAGCAACCTGTGAAGAGGACAA---TCGGCCTGAATTTACACATGAAATAATTGAATTTCCTATTGTTTTATTAAATACTCATACCCTAGAAATA i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991263 126 + 1077291 -TGCTATTA-----------------------------TGATTACATCTGTGTCATTGACTTTGAGGCAACCTGTGAAGAGGGTAA---CTCTACAGACTACACCCATGAAATAATAGAGTTCCCTATCGTCTTACTCAATACACACACACTGGAAATT i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 75292 89 + 405459 -AGTAACCA-----------------------------GGCACATTTTAGTactactaaatttg------cacaaaaagaaagaaa---gaagcctaATCTCctattttaga--atttatttttctgtag----------------------------- i latCha1.JH128645 I 14324 C 0 s tetNig2.chr19 1593540 126 + 7272499 -ACCTACTA-----------------------------CGATTACATCTGTGTGGTGGACTTTGAAGCGACGTGCGAGGTGGACAA---CCCTTCGGACTACCACCATGAAATCATCGAATTCCCCATGGTTcttatcaacacacacaccctagaAATT i tetNig2.chr19 C 0 I 84 s fr3.chr18 3107015 126 + 8053132 -ACCTACTA-----------------------------CGATTACATCTGCGTGGTGGACTTTGAAGCGACATGTGAGGTGGACAA---TCCTTCAGACTTCCACCACGAAATCATTGAATTCCCCATGGTTCTTATCAACACGCACACTCTAGAAATT i fr3.chr18 C 0 I 82 s oreNil2.chrLG17 15524439 126 - 31749960 -ACGTACTA-----------------------------CGACTACATCTGTGTGGTGGACTTTGAAGCCACATGTGAAGAGGACAA---TCCCTCAGACTTCCTCCACGAAATCATTGAGTTCCCCATGGTTCTCATCAACACGCACACCTTGGAGATT i oreNil2.chrLG17 C 0 I 97 s gasAcu1.chrIV 32330956 126 + 32632948 -ACCTACTA-----------------------------TGACTACATCTGCGTGGTGGACTTCGAAGCAACGTGTGAAGAGGACAA---CCCGTCCGACTTCCACCACGAGATCATAGAGTTCCCCATGGTGCTCATCAACACGCACACCTTGGAAATC i gasAcu1.chrIV C 0 I 78 s oryLat2.chr23 20959411 126 + 24050845 -ACCTACTA-----------------------------CGACTACATCTGCGTGGTGGACTTTGAGGCCACATGTGAGGAGGATAA---TCCCTCAGACTTCCTCCATGAAATCATCGAGTTCCCCTTGGTTCTCATCAACACTCACACCCTACAGATC i oryLat2.chr23 C 0 I 82 s gadMor1.CAEA01178453 780 126 + 1832 -ACCTACTA-----------------------------CGACTACATCTGCGTGGTGGACTACGAGGCCACCTGCGAGGAAGACAA---CCCGCCCGAGTTCCAGCACGAGATCATCGAGTTCCCCATGGTCCTGATCAACACGCGCACCCTGGAGATC i gadMor1.CAEA01178453 C 0 I 8 s danRer7.chr21 25802769 126 - 44544065 -ATGTACTT-----------------------------TGACTACATCTGTGTGGTGGATTTTGAAGCAACATGCGAAGAGAATAA---CCCACCAGATTACCTCCATGAAATCATTGAGTTCCCCATGGTGTTGATCGACACACACACACTGGAGATT i danRer7.chr21 C 0 I 172 s petMar1.Contig552 14362 156 + 64836 AGCATACTACACGCGAGCAAATTGGAGCCGTGTGCCTTCAACTACATCTGTGTGATCGACTTCGAGGCCACTTGCCAGGAGCACAA---CCCTCGGGACTTCCCACATGAAATAATCGAGTTCCCTGTGGTTCTGCTTAATACCAGCACTCTGCAGATT i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=48572.000000 s mm10.chrUn_GL456366 27618 5 + 47073 GAAGA s micMur1.scaffold_20543 5478 5 - 11586 GGAGA i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_311440 161931 5 - 202772 GTAAG i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156851 5 - 2194741 GAAGA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289839163 5 - 304825324 GTAAG i monDom5.chr5 I 1 C 0 s sarHar1.chr6_GL864737_random 3660762 5 - 3706227 GGGGC i sarHar1.chr6_GL864737_random I 11 C 0 s macEug2.GL127885 6941 5 - 223658 GAAGA i macEug2.GL127885 I 3460 C 0 s ornAna1.Ultra173 3744361 5 - 3935469 GTAAG i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30751461 5 + 74864452 GTAAG i melGal1.chr4 C 0 I 739 s galGal4.chr4 48930262 5 + 90216835 GTAAG i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26464446 5 + 69780378 GTAAG i taeGut1.chr4 C 0 I 1336 s melUnd1.JH556597 797267 5 - 11523850 GTAAG i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1171041 5 + 2017131 GTAAG i anoCar2.chrUn_GL343257 C 0 I 701 s chrPic1.JH584678 582323 5 + 1521786 GTAAG i chrPic1.JH584678 C 0 I 3106 s xenTro3.GL173046 991389 5 + 1077291 GTAAG i xenTro3.GL173046 C 0 I 296 s latCha1.JH128645 75381 5 + 405459 gaGGA i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593750 5 + 7272499 GTGGA i tetNig2.chr19 I 84 C 0 s fr3.chr18 3107223 5 + 8053132 GTGGA i fr3.chr18 I 82 C 0 s oreNil2.chrLG17 15524662 5 - 31749960 GTGGA i oreNil2.chrLG17 I 97 C 0 s gasAcu1.chrIV 32331160 5 + 32632948 GTGGA i gasAcu1.chrIV I 78 C 0 s oryLat2.chr23 20959619 5 + 24050845 GTGGA i oryLat2.chr23 I 82 C 0 s gadMor1.CAEA01178453 914 5 + 1832 GTGGG i gadMor1.CAEA01178453 I 8 C 0 s danRer7.chr21 25803067 5 - 44544065 GTAGA i danRer7.chr21 I 172 C 0 s petMar1.Contig552 14518 5 + 64836 GTACG i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=5925.000000 s mm10.chrUn_GL456366 27623 1 + 47073 T s micMur1.scaffold_20543 5483 1 - 11586 T i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_311440 161936 1 - 202772 T i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156856 1 - 2194741 T i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289839168 1 - 304825324 T i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3660767 1 - 3706227 C i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 6946 1 - 223658 C i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3744366 1 - 3935469 T i ornAna1.Ultra173 C 0 I 1288 s melGal1.chr4 30752205 1 + 74864452 T i melGal1.chr4 I 739 C 0 s galGal4.chr4 48930267 1 + 90216835 T i galGal4.chr4 C 0 I 1479 s taeGut1.chr4 26465787 1 + 69780378 T i taeGut1.chr4 I 1336 C 0 s melUnd1.JH556597 797272 1 - 11523850 T i melUnd1.JH556597 C 0 I 1273 s anoCar2.chrUn_GL343257 1171747 1 + 2017131 T i anoCar2.chrUn_GL343257 I 701 C 0 s chrPic1.JH584678 585434 1 + 1521786 T i chrPic1.JH584678 I 3106 C 0 s xenTro3.GL173046 991690 1 + 1077291 T i xenTro3.GL173046 I 296 C 0 s latCha1.JH128645 75386 1 + 405459 T i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593755 1 + 7272499 C i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107228 1 + 8053132 C i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524667 1 - 31749960 C i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331165 1 + 32632948 C i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959624 1 + 24050845 C i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 919 1 + 1832 G i gadMor1.CAEA01178453 C 0 C 0 s danRer7.chr21 25803072 1 - 44544065 C i danRer7.chr21 C 0 C 0 s petMar1.Contig552 14523 1 + 64836 T i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=66705.000000 s mm10.chrUn_GL456366 27624 8 + 47073 ACATTTCA s micMur1.scaffold_20543 5484 8 - 11586 ACATTTCA i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_311440 161937 8 - 202772 GAATTTTA i echTel1.scaffold_311440 C 0 C 0 s dasNov3.JH582505 156857 8 - 2194741 ACATTTCA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289839169 8 - 304825324 GAACCCTG i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3660768 8 - 3706227 CCGCTATG i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 6947 8 - 223658 ACCTTCCA i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3745655 8 - 3935469 ACGTTTCA i ornAna1.Ultra173 I 1288 C 0 s melGal1.chr4 30752206 8 + 74864452 ACATTCCA i melGal1.chr4 C 0 C 0 s taeGut1.chr4 26465788 8 + 69780378 ACCTTTCA i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 798546 8 - 11523850 ACCTTTCA i melUnd1.JH556597 I 1273 C 0 s anoCar2.chrUn_GL343257 1171748 8 + 2017131 ACGTTTCA i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 585435 8 + 1521786 ACCTTTCA i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991691 8 + 1077291 GTATTTCA i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 75387 8 + 405459 ACCTTCCA i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593756 8 + 7272499 TCATTTCG i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107229 8 + 8053132 TCGTTTCA i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524668 8 - 31749960 ACCTTTCA i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331166 8 + 32632948 TCGTTTCA i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959625 8 + 24050845 ACGTTTCA i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 920 7 + 1832 ACGTTCT- i gadMor1.CAEA01178453 C 0 C 0 s danRer7.chr21 25803073 8 - 44544065 TCGTTTCA i danRer7.chr21 C 0 C 0 s petMar1.Contig552 14524 8 + 64836 ccttttca i petMar1.Contig552 C 0 I 1257 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e galGal4.chr4 48930268 1479 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=14222.000000 s mm10.chrUn_GL456366 27632 1 + 47073 G s micMur1.scaffold_20543 5492 1 - 11586 G i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_311440 161945 1 - 202772 G i echTel1.scaffold_311440 C 0 N 0 s dasNov3.JH582505 156865 1 - 2194741 G i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289839177 1 - 304825324 G i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3660776 1 - 3706227 T i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 6955 1 - 223658 G i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3745663 1 - 3935469 G i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30752214 1 + 74864452 G i melGal1.chr4 C 0 C 0 s taeGut1.chr4 26465796 1 + 69780378 G i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 798554 1 - 11523850 G i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1171756 1 + 2017131 G i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 585443 1 + 1521786 A i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991699 1 + 1077291 G i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 75395 1 + 405459 G i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593764 1 + 7272499 G i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107237 1 + 8053132 G i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524676 1 - 31749960 G i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331174 1 + 32632948 G i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959633 1 + 24050845 G i oryLat2.chr23 C 0 C 0 s danRer7.chr21 25803081 1 - 44544065 G i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 14532 1257 + 64836 I e gadMor1.CAEA01178453 927 0 + 1832 C e proCap1.scaffold_48533 5705 10904 - 16610 I e galGal4.chr4 48930268 1479 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=-1180.000000 s mm10.chrUn_GL456366 27633 1 + 47073 C s micMur1.scaffold_20543 5493 1 - 11586 C i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156866 1 - 2194741 C i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289839178 1 - 304825324 T i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3660777 1 - 3706227 C i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 6956 1 - 223658 C i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3745664 1 - 3935469 C i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30752215 1 + 74864452 C i melGal1.chr4 C 0 C 0 s taeGut1.chr4 26465797 1 + 69780378 C i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 798555 1 - 11523850 C i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1171757 1 + 2017131 C i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 585444 1 + 1521786 C i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991700 1 + 1077291 C i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 75396 1 + 405459 C i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593765 1 + 7272499 G i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107238 1 + 8053132 G i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524677 1 - 31749960 G i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331175 1 + 32632948 G i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959634 1 + 24050845 T i oryLat2.chr23 C 0 C 0 s danRer7.chr21 25803082 1 - 44544065 G i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 14532 1257 + 64836 I e gadMor1.CAEA01178453 927 0 + 1832 C e proCap1.scaffold_48533 5705 10904 - 16610 I e galGal4.chr4 48930268 1479 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=202564.000000 s mm10.chrUn_GL456366 27634 31 + 47073 AGTATGTGAGGCCAGAGGTCAATGCTCAGTT s micMur1.scaffold_20543 5494 31 - 11586 AGTATGTAAGACCAGAGATTAACACACAACT i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156867 19 - 2194741 AGTATGTGAGACCAGAGA------------T i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289839179 13 - 304825324 TCTCTGCTCTGTC------------------ i monDom5.chr5 C 0 I 3990 s sarHar1.chr6_GL864737_random 3660778 25 - 3706227 TGTCTGTGTGGGC------CCACGGCTGTGA i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 6957 31 - 223658 AGTATGTGAAGCCAGAGATCAACGCTCAGCT i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3745665 31 - 3935469 AGTATGTGAGGCCAGAAATTAACACCCAGCT i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30752216 31 + 74864452 AATATGTGAAGCCAGAGATCAATCCCAAGCT i melGal1.chr4 C 0 C 0 s taeGut1.chr4 26465798 31 + 69780378 AATACGTGAAGCCAGAGATTAATCCCAAGCT i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 798556 31 - 11523850 AATACGTGAAGCCAGAGATTAATCCCAAGCT i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1171758 31 + 2017131 AATATGTGAAACCAGTGATTAATCCACAGCT i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 585445 31 + 1521786 AGTATGTGAAACCAGAGATTAATCCCCAGCT i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991701 31 + 1077291 GCTACGTGAGACCAGAAATTAATCCTCAACT i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 75397 31 + 405459 AGTATGTGAAGCCAGAGGTGAATACGAAACT i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593766 31 + 7272499 AATATGTAAAACCTGAGTTAAACCCACAGCT i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107239 31 + 8053132 AATACGTAAAACCAGAGTTAAACCCACAGCT i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524678 31 - 31749960 AGTACGTGAAGCCCGAGCTTAACCCACAGCT i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331176 31 + 32632948 AATACGTGAAGCCAGAGTCGAACCCGCAGCT i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959635 31 + 24050845 CGTACGTGAAACCGGAGTTAAACCCTAAACT i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 927 23 + 1832 ----CGTAGGACCA----TAAGTCCATTTCT i gadMor1.CAEA01178453 C 0 C 0 s danRer7.chr21 25803083 31 - 44544065 AGTATGTGAAGCCAGTGCTGCACCCACAGCT i danRer7.chr21 C 0 C 0 s petMar1.Contig552 15789 31 + 64836 AGTACGTGAAGCCATTTCTGAATCCCACACT i petMar1.Contig552 I 1257 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e galGal4.chr4 48930268 1479 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=158546.000000 s mm10.chrUn_GL456366 27665 19 + 47073 TTCAGAGTTCTGCATCGGT s micMur1.scaffold_20543 5525 19 - 11586 TTCTGATTTCTGCATGAAT i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156886 19 - 2194741 TTCTGATTTCTGCATCAAT i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289843182 19 - 304825324 TTCTGACTTCTGCATCAGC i monDom5.chr5 I 3990 C 0 s sarHar1.chr6_GL864737_random 3660803 19 - 3706227 TTCAAGCCACTGCGTTGTC i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 6988 19 - 223658 TTCTGACTTCTGCATCAAC i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3745696 19 - 3935469 TTCAGACTTTTGCATCAAT i ornAna1.Ultra173 C 0 I 1771 s melGal1.chr4 30752247 19 + 74864452 TTCTGAATTTTGTGTTGGT i melGal1.chr4 C 0 C 0 s taeGut1.chr4 26465829 19 + 69780378 TTCAGACTTCTGCATCAGT i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 798587 19 - 11523850 TTCAGACTTCTGCATCAGG i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1171789 19 + 2017131 TTCGGATTTCTGCATTAAT i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 585476 19 + 1521786 TTCAAACTTCTGCATCAAT i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991732 19 + 1077291 TTCTGAATTTTGTGTCAAC i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 75428 19 + 405459 TTCTGATTTCTGCATCCGT i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593797 19 + 7272499 TTCGGATTTCTGCGTGAAG i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107270 19 + 8053132 TTCAGACTTCTGCGTGAAG i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524709 19 - 31749960 CTCAGACTTCTGTGTGAAG i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331207 19 + 32632948 CTCCGACTTCTGTGTGCAG i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959666 19 + 24050845 TTCTGACTTTTGCGTCACG i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 950 11 + 1832 CCTAGTTCAct-------- i gadMor1.CAEA01178453 C 0 C 0 s danRer7.chr21 25803114 19 - 44544065 CTCTGAGTTTTGTGTAAAA i danRer7.chr21 C 0 C 0 s petMar1.Contig552 15820 19 + 64836 CTCAAATTTCTGCACTTCC i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e galGal4.chr4 48930268 1479 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=88321.000000 s mm10.chrUn_GL456366 27684 10 + 47073 CTTACTGGAA s micMur1.scaffold_20543 5544 10 - 11586 CTTACTGGAA i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156905 10 - 2194741 ATTACTGGAA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289843201 10 - 304825324 CTTACAGGAA i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3660822 7 - 3706227 CTT---GGTC i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 7007 10 - 223658 CTCACAGGAA i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3747486 10 - 3935469 CTCTCTTGAA i ornAna1.Ultra173 I 1771 C 0 s melGal1.chr4 30752266 10 + 74864452 CTGACAGGGA i melGal1.chr4 C 0 C 0 s taeGut1.chr4 26465848 10 + 69780378 CTGACAGGAA i taeGut1.chr4 C 0 I 683 s melUnd1.JH556597 798606 10 - 11523850 CTGACAGGAA i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1171808 10 + 2017131 CTGACTGGAA i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 585495 10 + 1521786 CTGACAGGAA i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991751 10 + 1077291 CTTACAGGTA i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 75447 10 + 405459 CTGACTGGAA i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1593816 10 + 7272499 TTAACAGGAA i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107289 10 + 8053132 TTGACAGGAA i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524728 10 - 31749960 CTGACGGGAA i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331226 10 + 32632948 TTAACGGGGA i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959685 10 + 24050845 CTAACGGGAA i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 961 5 + 1832 -----agagt i gadMor1.CAEA01178453 C 0 C 0 s danRer7.chr21 25803133 10 - 44544065 CTTACCGGAA i danRer7.chr21 C 0 C 0 s petMar1.Contig552 15839 10 + 64836 CTAACGGGGA i petMar1.Contig552 C 0 I 3020 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e galGal4.chr4 48930268 1479 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=26559.000000 s mm10.chrUn_GL456366 27694 3 + 47073 TCA s micMur1.scaffold_20543 5554 3 - 11586 TTA i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156915 3 - 2194741 TTA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289843211 3 - 304825324 TTA i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3660829 3 - 3706227 TCA i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 7017 3 - 223658 TTA i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3747496 3 - 3935469 TTC i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30752276 3 + 74864452 TCA i melGal1.chr4 C 0 I 640 s galGal4.chr4 48931747 3 + 90216835 tcT i galGal4.chr4 I 1479 C 0 s taeGut1.chr4 26466541 3 + 69780378 tcc i taeGut1.chr4 I 683 C 0 s melUnd1.JH556597 798616 3 - 11523850 TCA i melUnd1.JH556597 C 0 I 682 s anoCar2.chrUn_GL343257 1171818 3 + 2017131 TTT i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 585505 3 + 1521786 TCA i chrPic1.JH584678 C 0 I 1564 s xenTro3.GL173046 991761 3 + 1077291 TAA i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 75457 3 + 405459 TTA i latCha1.JH128645 C 0 I 1 s tetNig2.chr19 1593826 3 + 7272499 TCA i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107299 3 + 8053132 TCA i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524738 3 - 31749960 TTA i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331236 3 + 32632948 TAA i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959695 3 + 24050845 TCA i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01178453 966 3 + 1832 tca i gadMor1.CAEA01178453 C 0 C 0 s danRer7.chr21 25803143 3 - 44544065 TAA i danRer7.chr21 C 0 C 0 s petMar1.Contig552 18869 3 + 64836 taa i petMar1.Contig552 I 3020 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=21000.000000 s mm10.chrUn_GL456366 27697 1 + 47073 C s micMur1.scaffold_20543 5557 1 - 11586 C i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156918 1 - 2194741 C i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289843214 1 - 304825324 C i monDom5.chr5 C 0 I 945 s sarHar1.chr6_GL864737_random 3660832 1 - 3706227 C i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 7020 1 - 223658 C i macEug2.GL127885 C 0 I 710 s melGal1.chr4 30752919 1 + 74864452 C i melGal1.chr4 I 640 C 0 s galGal4.chr4 48931750 1 + 90216835 C i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26466544 1 + 69780378 c i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 799301 1 - 11523850 c i melUnd1.JH556597 I 682 C 0 s anoCar2.chrUn_GL343257 1171821 1 + 2017131 C i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 587072 1 + 1521786 C i chrPic1.JH584678 I 1564 C 0 s xenTro3.GL173046 991764 1 + 1077291 C i xenTro3.GL173046 C 0 C 0 s tetNig2.chr19 1593829 1 + 7272499 C i tetNig2.chr19 C 0 I 1 s fr3.chr18 3107302 1 + 8053132 C i fr3.chr18 C 0 I 1 s oreNil2.chrLG17 15524741 1 - 31749960 C i oreNil2.chrLG17 C 0 I 1 s gasAcu1.chrIV 32331239 1 + 32632948 C i gasAcu1.chrIV C 0 I 1 s oryLat2.chr23 20959698 1 + 24050845 C i oryLat2.chr23 C 0 I 1 s gadMor1.CAEA01178453 969 1 + 1832 c i gadMor1.CAEA01178453 C 0 I 1 s danRer7.chr21 25803146 1 - 44544065 C i danRer7.chr21 C 0 I 1 s petMar1.Contig552 18872 1 + 64836 c i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e ornAna1.Ultra173 3747499 0 - 3935469 C e proCap1.scaffold_48533 5705 10904 - 16610 I e latCha1.JH128645 75460 1 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=3658.000000 s mm10.chrUn_GL456366 27698 1 + 47073 T s micMur1.scaffold_20543 5558 1 - 11586 T i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156919 1 - 2194741 T i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289844160 1 - 304825324 T i monDom5.chr5 I 945 C 0 s macEug2.GL127885 7731 1 - 223658 T i macEug2.GL127885 I 710 C 0 s ornAna1.Ultra173 3747499 1 - 3935469 T i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30752920 1 + 74864452 T i melGal1.chr4 C 0 C 0 s galGal4.chr4 48931751 1 + 90216835 A i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26466545 1 + 69780378 t i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 799302 1 - 11523850 t i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1171822 1 + 2017131 T i anoCar2.chrUn_GL343257 C 0 I 854 s chrPic1.JH584678 587073 1 + 1521786 T i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991765 1 + 1077291 T i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 75461 1 + 405459 c i latCha1.JH128645 I 1 C 0 s petMar1.Contig552 18873 1 + 64836 c i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e oreNil2.chrLG17 15524742 1 - 31749960 I e gadMor1.CAEA01178453 970 1 + 1832 I e fr3.chr18 3107303 1 + 8053132 I e tetNig2.chr19 1593830 1 + 7272499 I e danRer7.chr21 25803147 1 - 44544065 I e oryLat2.chr23 20959699 1 + 24050845 I e gasAcu1.chrIV 32331240 1 + 32632948 I e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sarHar1.chr6_GL864737_random 3660833 0 - 3706227 C e rn5.chr7 143074480 36791 + 143501887 I a score=71128.000000 s mm10.chrUn_GL456366 27699 4 + 47073 TAGG s micMur1.scaffold_20543 5559 4 - 11586 CAGG i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156920 4 - 2194741 CAGA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289844161 4 - 304825324 CAGG i monDom5.chr5 C 0 C 0 s macEug2.GL127885 7732 4 - 223658 CAGG i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3747500 4 - 3935469 CAGG i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30752921 4 + 74864452 TAGG i melGal1.chr4 C 0 C 0 s galGal4.chr4 48931752 4 + 90216835 TAGG i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26466546 4 + 69780378 tagG i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 799303 4 - 11523850 tagG i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1172677 4 + 2017131 CAGG i anoCar2.chrUn_GL343257 I 854 C 0 s chrPic1.JH584678 587074 4 + 1521786 CAGG i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 991766 4 + 1077291 CAGG i xenTro3.GL173046 C 0 I 2947 s latCha1.JH128645 75462 4 + 405459 cagg i latCha1.JH128645 C 0 I 27361 s tetNig2.chr19 1593831 4 + 7272499 CAGG i tetNig2.chr19 I 1 C 0 s fr3.chr18 3107304 4 + 8053132 CAGG i fr3.chr18 I 1 C 0 s oreNil2.chrLG17 15524743 4 - 31749960 CAGG i oreNil2.chrLG17 I 1 C 0 s gasAcu1.chrIV 32331241 4 + 32632948 CAGG i gasAcu1.chrIV I 1 C 0 s oryLat2.chr23 20959700 4 + 24050845 CAGG i oryLat2.chr23 I 1 C 0 s gadMor1.CAEA01178453 971 4 + 1832 taga i gadMor1.CAEA01178453 I 1 C 0 s danRer7.chr21 25803148 4 - 44544065 CAGG i danRer7.chr21 I 1 C 0 s petMar1.Contig552 18874 4 + 64836 TAGG i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sarHar1.chr6_GL864737_random 3660833 0 - 3706227 C e rn5.chr7 143074480 36791 + 143501887 I a score=-48441.000000 s mm10.chrUn_GL456366 27703 6 + 47073 -ATCAGG s micMur1.scaffold_20543 5563 6 - 11586 -ATCAGG i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156924 6 - 2194741 -ATCAGA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289844165 6 - 304825324 -ATATGG i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3660833 5 - 3706227 --CTTAG i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 7736 6 - 223658 -ACATGG i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3747504 6 - 3935469 -ATGTGG i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30752925 6 + 74864452 -ACATTG i melGal1.chr4 C 0 C 0 s galGal4.chr4 48931756 6 + 90216835 -ACATTG i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26466550 6 + 69780378 -ACATTG i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 799307 6 - 11523850 -ACATTG i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1172681 6 + 2017131 -AACGTG i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 587078 6 + 1521786 -ACCACG i chrPic1.JH584678 C 0 C 0 s tetNig2.chr19 1593835 4 + 7272499 ---TGGG i tetNig2.chr19 C 0 I 70 s fr3.chr18 3107308 4 + 8053132 ---TAGG i fr3.chr18 C 0 I 73 s oreNil2.chrLG17 15524747 4 - 31749960 ---TTGG i oreNil2.chrLG17 C 0 I 80 s gasAcu1.chrIV 32331245 4 + 32632948 ---TTGG i gasAcu1.chrIV C 0 I 82 s oryLat2.chr23 20959704 4 + 24050845 ---TTAG i oryLat2.chr23 C 0 I 79 s gadMor1.CAEA01178453 975 6 + 1832 -ctctgg i gadMor1.CAEA01178453 C 0 N 0 s danRer7.chr21 25803152 4 - 44544065 ---CAAG i danRer7.chr21 C 0 I 2 s petMar1.Contig552 18878 6 + 64836 AAACTG- i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e xenTro3.GL173046 991770 2947 + 1077291 I e latCha1.JH128645 75466 27361 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=167507.000000 s mm10.chrUn_GL456366 27709 31 + 47073 TAGA----CAGAGCCGATGCTTTC--CCTCAGGTCCT s micMur1.scaffold_20543 5569 31 - 11586 TAGA----CAGGGCTGATACCTTC--CCTCAGGTACT i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156930 31 - 2194741 TAGA----CAGAGTGCATACCTTC--CCTCAGGTTCT i dasNov3.JH582505 C 0 I 1 s monDom5.chr5 289844171 31 - 304825324 TGGA----CCGAGCTGCCACTTTC--CCACAGGTGCT i monDom5.chr5 C 0 I 2 s sarHar1.chr6_GL864737_random 3660838 37 - 3706227 CTGACCTTCCGAGCCGAGGCCTCCGATCACAGGCCCT i sarHar1.chr6_GL864737_random C 0 I 3033 s macEug2.GL127885 7742 31 - 223658 TGGA----CAGAGCTGACACTTTT--CCTCAGGTGCT i macEug2.GL127885 C 0 I 2 s ornAna1.Ultra173 3747510 31 - 3935469 TCGA----CAGAGCGGATACATTT--CCTCAGGTGCT i ornAna1.Ultra173 C 0 I 2 s melGal1.chr4 30752931 31 + 74864452 TTGA----TAAGGCTGATACATTT--CCTCAAGTTCT i melGal1.chr4 C 0 I 2 s galGal4.chr4 48931762 31 + 90216835 TTGA----TAAAGCTGATACATTC--CCTCAAGTTCT i galGal4.chr4 C 0 I 2 s taeGut1.chr4 26466556 31 + 69780378 TTGA----TAAAGCTGATATTTTT--CCTCAAGTTCT i taeGut1.chr4 C 0 I 2 s melUnd1.JH556597 799313 31 - 11523850 TTGA----TAAAGCTGAAACATTT--ACTCAAGTTCT i melUnd1.JH556597 C 0 I 2 s anoCar2.chrUn_GL343257 1172687 31 + 2017131 TAGA----CAAAGCCGATGAATTC--CCAAAGGTTCT i anoCar2.chrUn_GL343257 C 0 I 2 s chrPic1.JH584678 587084 31 + 1521786 TAGA----CAAAGCTGATGCATTT--CCTCAGGTTCT i chrPic1.JH584678 C 0 I 2 s tetNig2.chr19 1593909 31 + 7272499 tGGA----CAAGGCTGAGCCCTTT--CCAGCCGTCCT i tetNig2.chr19 I 70 I 2 s fr3.chr18 3107385 31 + 8053132 TCGA----TGAGGCAGATTCGTTT--CCAGCTGTTCT i fr3.chr18 I 73 I 2 s oreNil2.chrLG17 15524831 31 - 31749960 TCGA----TGAAGCAGACCCGTTC--CCAGTAGTCCT i oreNil2.chrLG17 I 80 I 2 s gasAcu1.chrIV 32331331 31 + 32632948 TGGA----CGAAGCGGCCCCGTTT--CCGGATGTCCT i gasAcu1.chrIV I 82 I 2 s oryLat2.chr23 20959787 31 + 24050845 TGGA----CGAAGCGGACCCGTTC--CCACAAGTCCT i oryLat2.chr23 I 79 I 2 s danRer7.chr21 25803158 17 - 44544065 TTAA----CAAACTG----------------TGTATT i danRer7.chr21 I 2 I 2 s petMar1.Contig552 18884 31 + 64836 TGGA----CGCTGCCGACTATTTC--CCTGAAGTAAT i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e xenTro3.GL173046 991770 2947 + 1077291 I e latCha1.JH128645 75466 27361 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=-37786.000000 s mm10.chrUn_GL456366 27740 4 + 47073 --GAAA s micMur1.scaffold_20543 5600 4 - 11586 --AAAA i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156962 4 - 2194741 --AAAA i dasNov3.JH582505 I 1 C 0 s monDom5.chr5 289844204 1 - 304825324 -----G i monDom5.chr5 I 2 I 1 s macEug2.GL127885 7775 1 - 223658 -----A i macEug2.GL127885 I 2 I 1 s ornAna1.Ultra173 3747543 2 - 3935469 --AA-- i ornAna1.Ultra173 I 2 C 0 s melGal1.chr4 30752964 2 + 74864452 --AG-- i melGal1.chr4 I 2 C 0 s galGal4.chr4 48931795 2 + 90216835 --AG-- i galGal4.chr4 I 2 C 0 s taeGut1.chr4 26466589 2 + 69780378 --AG-- i taeGut1.chr4 I 2 C 0 s melUnd1.JH556597 799346 2 - 11523850 --AG-- i melUnd1.JH556597 I 2 C 0 s anoCar2.chrUn_GL343257 1172720 2 + 2017131 --AG-- i anoCar2.chrUn_GL343257 I 2 C 0 s chrPic1.JH584678 587117 2 + 1521786 --AA-- i chrPic1.JH584678 I 2 C 0 s tetNig2.chr19 1593942 2 + 7272499 --AG-- i tetNig2.chr19 I 2 C 0 s fr3.chr18 3107418 2 + 8053132 --AG-- i fr3.chr18 I 2 C 0 s oreNil2.chrLG17 15524864 2 - 31749960 --AG-- i oreNil2.chrLG17 I 2 C 0 s gasAcu1.chrIV 32331364 2 + 32632948 --AG-- i gasAcu1.chrIV I 2 C 0 s oryLat2.chr23 20959820 2 + 24050845 --AG-- i oryLat2.chr23 I 2 C 0 s danRer7.chr21 25803177 2 - 44544065 --GT-- i danRer7.chr21 I 2 C 0 s petMar1.Contig552 18915 4 + 64836 CGAC-- i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e xenTro3.GL173046 991770 2947 + 1077291 I e latCha1.JH128645 75466 27361 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sarHar1.chr6_GL864737_random 3660875 3033 - 3706227 I e rn5.chr7 143074480 36791 + 143501887 I a score=38257.000000 s mm10.chrUn_GL456366 27744 12 + 47073 AAAGTGATTGAG s micMur1.scaffold_20543 5604 12 - 11586 AAAGTAATTTAC i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156966 12 - 2194741 AAAGTAATTGAC i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289844206 12 - 304825324 AATGTGGTGGAG i monDom5.chr5 I 1 C 0 s sarHar1.chr6_GL864737_random 3663908 12 - 3706227 AATGTAGTGGAC i sarHar1.chr6_GL864737_random I 3033 C 0 s macEug2.GL127885 7777 12 - 223658 AACGTCGTGGAC i macEug2.GL127885 I 1 C 0 s ornAna1.Ultra173 3747545 12 - 3935469 AAAGTAGTTGAA i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30752966 12 + 74864452 AATGTTGTAGAC i melGal1.chr4 C 0 C 0 s galGal4.chr4 48931797 12 + 90216835 AATGTTGTAGAC i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26466591 12 + 69780378 AATGTCATAGAG i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 799348 12 - 11523850 AATGTCATAGAG i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1172722 12 + 2017131 TCAGTCATAGAT i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 587119 12 + 1521786 AATGTTGTAGAG i chrPic1.JH584678 C 0 C 0 s tetNig2.chr19 1593944 12 + 7272499 CGAGCTGTCGCT i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107420 12 + 8053132 CGAGTTGTAGCT i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524866 12 - 31749960 CGAGTTGTGTCG i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331366 12 + 32632948 CGGGTCGTCGCT i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959822 12 + 24050845 CGAGTCGTGAAA i oryLat2.chr23 C 0 C 0 s danRer7.chr21 25803179 12 - 44544065 TAAGTGGTAATT i danRer7.chr21 C 0 C 0 s petMar1.Contig552 18919 12 + 64836 AGAGTTGTAAAT i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e xenTro3.GL173046 991770 2947 + 1077291 I e latCha1.JH128645 75466 27361 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=244066.000000 s mm10.chrUn_GL456366 27756 32 + 47073 TGGATG---------------AAGTCAAAGGAGTTGGGAACTAAGTA s micMur1.scaffold_20543 5616 32 - 11586 TGGATG---------------AAATTGAAGGAATTAGGAACAAAGTA i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 156978 32 - 2194741 TGGATG---------------AAGTTGAAAGAATTAGGAACAAAGTA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289844218 32 - 304825324 TGGATG---------------AAGCTGAAGGAGCTAGGAACCACATA i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3663920 32 - 3706227 TGGATG---------------AGGCTAAAAGAGCTAGGAACTAAGTA i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 7789 32 - 223658 TGGATG---------------AGGCAGAAAGAGCTAGGAACTAAGTA i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3747557 32 - 3935469 TGGATG---------------AGACAAAAGGAGCTGGGGACAAAGTA i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30752978 32 + 74864452 TGGATG---------------AGGCAGCGAGAACTGGGAACGAAGTA i melGal1.chr4 C 0 C 0 s galGal4.chr4 48931809 32 + 90216835 TGGATG---------------AGGCAGCGAGAACTGGGAACGAAGTA i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26466603 32 + 69780378 TGGATG---------------AGACAACGAGAACTGGGAACAAAGTA i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 799360 32 - 11523850 TGGATG---------------AGACAGCGAGAACTGGGAACAAAGTA i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1172734 32 + 2017131 TGGATG---------------AAACAGAAAGAACTAGGAAGCAGATA i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 587131 32 + 1521786 TGgatg---------------agacagagagagctggGAACCAAATA i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 994717 32 + 1077291 TGAAAC---------------ATGTTTAACACATTTGCAGCTAAATG i xenTro3.GL173046 I 2947 C 0 s tetNig2.chr19 1593956 32 + 7272499 TGGCTC---------------CAGGAGCGGGAACTCGGAACAAAGTA i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107432 32 + 8053132 TGGCTC---------------CAGGAGAGGGAACTCGGAACAAAGTA i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524878 32 - 31749960 TGGCTT---------------CAGGAAAGGGAACTcggaacaaaata i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331378 32 + 32632948 TGGCTT---------------CAGGAGAGGGAGCTCGGGACAAAGTA i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959834 32 + 24050845 TGGCTT---------------CAGGAGAGAGACCTGGGAACAAAGCA i oryLat2.chr23 C 0 C 0 s danRer7.chr21 25803191 47 - 44544065 TAATTTGCATACAATTAAAtatacaatggcgacgcagtggcgcagta i danRer7.chr21 C 0 I 1870 s petMar1.Contig552 18931 32 + 64836 TGGATG---------------AGGCAGAAGGGTCTTGGAACAACCTA i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e latCha1.JH128645 75466 27361 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=129604.000000 s mm10.chrUn_GL456366 27788 18 + 47073 CAAGTACTGCATACTAAC s micMur1.scaffold_20543 5648 18 - 11586 TAAATATTGCATACTAAC i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157010 18 - 2194741 TAAATACCCCGTATTAAC i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289844250 18 - 304825324 TAAGTACTCCATATTGAC i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3663952 18 - 3706227 CAAATACTCCATCTTGAC i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 7821 18 - 223658 CAAGTACTCCATCCTGAC i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3747589 18 - 3935469 TAAATATTCCATACTGAC i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30753010 18 + 74864452 CAGCTATTGCATGTTGAC i melGal1.chr4 C 0 C 0 s galGal4.chr4 48931841 18 + 90216835 TAGCTATTGCATGTTGAC i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26466635 18 + 69780378 CAGCTATTCCATGTTGAC i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 799392 18 - 11523850 TAGCTATTCCATGTTGAC i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1172766 18 + 2017131 TAGCTATGCCATATTAAC i anoCar2.chrUn_GL343257 C 0 I 1121 s chrPic1.JH584678 587163 18 + 1521786 TAGCTATACCATATTGAC i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 994749 14 + 1077291 TCAAACTGCCTTGC---- i xenTro3.GL173046 C 0 C 0 s tetNig2.chr19 1593988 18 + 7272499 TAAATACGCCATTCTGAC i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107464 18 + 8053132 TAAATACGCCATTCTGAC i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15524910 18 - 31749960 caaatacgCCATCCTGAC i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331410 18 + 32632948 CAAATACGCCATCCTCAC i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959866 18 + 24050845 CAAATACGCCATTCTGAC i oryLat2.chr23 C 0 C 0 s petMar1.Contig552 18963 18 + 64836 CACTTACGCGATTCTTAC i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e danRer7.chr21 25803238 1870 - 44544065 I e proCap1.scaffold_48533 5705 10904 - 16610 I e latCha1.JH128645 75466 27361 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=33569.000000 s mm10.chrUn_GL456366 27806 5 + 47073 TGATG s micMur1.scaffold_20543 5666 5 - 11586 AGATG i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157028 3 - 2194741 AGA-- i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289844268 5 - 304825324 AGATG i monDom5.chr5 C 0 I 4101 s sarHar1.chr6_GL864737_random 3663970 5 - 3706227 GGACG i sarHar1.chr6_GL864737_random C 0 I 4153 s macEug2.GL127885 7839 5 - 223658 GGACG i macEug2.GL127885 C 0 I 1 s ornAna1.Ultra173 3747607 5 - 3935469 TGATG i ornAna1.Ultra173 C 0 I 1 s melGal1.chr4 30753028 5 + 74864452 AGATG i melGal1.chr4 C 0 I 1782 s galGal4.chr4 48931859 5 + 90216835 AGATG i galGal4.chr4 C 0 I 1738 s taeGut1.chr4 26466653 5 + 69780378 TGATG i taeGut1.chr4 C 0 I 1080 s melUnd1.JH556597 799410 5 - 11523850 AGATG i melUnd1.JH556597 C 0 I 2811 s anoCar2.chrUn_GL343257 1173905 2 + 2017131 ---tg i anoCar2.chrUn_GL343257 I 1121 I 4 s chrPic1.JH584678 587181 5 + 1521786 TGATG i chrPic1.JH584678 C 0 I 3218 s xenTro3.GL173046 994763 5 + 1077291 TGATT i xenTro3.GL173046 C 0 I 4 s tetNig2.chr19 1594006 5 + 7272499 CGACG i tetNig2.chr19 C 0 I 81 s fr3.chr18 3107482 5 + 8053132 TGATG i fr3.chr18 C 0 I 75 s oreNil2.chrLG17 15524928 5 - 31749960 TGACG i oreNil2.chrLG17 C 0 I 88 s gasAcu1.chrIV 32331428 5 + 32632948 CGACG i gasAcu1.chrIV C 0 I 87 s oryLat2.chr23 20959884 5 + 24050845 GGACG i oryLat2.chr23 C 0 I 78 s petMar1.Contig552 18981 5 + 64836 CGATG i petMar1.Contig552 C 0 I 185 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e danRer7.chr21 25803238 1870 - 44544065 I e proCap1.scaffold_48533 5705 10904 - 16610 I e latCha1.JH128645 75466 27361 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=-12203.000000 s mm10.chrUn_GL456366 27811 2 + 47073 -GA s micMur1.scaffold_20543 5671 2 - 11586 -GT i micMur1.scaffold_20543 C 0 C 0 s monDom5.chr5 289848374 1 - 304825324 -G- i monDom5.chr5 I 4101 I 1 s sarHar1.chr6_GL864737_random 3668128 1 - 3706227 -g- i sarHar1.chr6_GL864737_random I 4153 I 1 s macEug2.GL127885 7845 1 - 223658 -G- i macEug2.GL127885 I 1 I 4311 s ornAna1.Ultra173 3747613 1 - 3935469 -G- i ornAna1.Ultra173 I 1 I 3875 s melGal1.chr4 30754815 1 + 74864452 -G- i melGal1.chr4 I 1782 C 0 s galGal4.chr4 48933602 1 + 90216835 -C- i galGal4.chr4 I 1738 C 0 s taeGut1.chr4 26467738 1 + 69780378 -A- i taeGut1.chr4 I 1080 C 0 s melUnd1.JH556597 802226 1 - 11523850 -A- i melUnd1.JH556597 I 2811 C 0 s anoCar2.chrUn_GL343257 1173911 1 + 2017131 -a- i anoCar2.chrUn_GL343257 I 4 C 0 s chrPic1.JH584678 590404 1 + 1521786 -G- i chrPic1.JH584678 I 3218 C 0 s xenTro3.GL173046 994772 1 + 1077291 -G- i xenTro3.GL173046 I 4 C 0 s latCha1.JH128645 102827 1 + 405459 -G- i latCha1.JH128645 I 27361 I 1 s tetNig2.chr19 1594092 1 + 7272499 -G- i tetNig2.chr19 I 81 C 0 s fr3.chr18 3107562 1 + 8053132 -a- i fr3.chr18 I 75 C 0 s oreNil2.chrLG17 15525021 1 - 31749960 -G- i oreNil2.chrLG17 I 88 C 0 s gasAcu1.chrIV 32331520 1 + 32632948 -G- i gasAcu1.chrIV I 87 C 0 s oryLat2.chr23 20959967 1 + 24050845 -G- i oryLat2.chr23 I 78 C 0 s gadMor1.CAEA01235922 507 1 - 1224 -c- i gadMor1.CAEA01235922 N 0 C 0 s danRer7.chr21 25805108 1 - 44544065 -G- i danRer7.chr21 I 1870 C 0 s petMar1.Contig552 19171 2 + 64836 GG- i petMar1.Contig552 I 185 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e dasNov3.JH582505 157031 0 - 2194741 C e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=1258300.000000 s mm10.chrUn_GL456366 27813 89 + 47073 TCCTGGGATATGAGTAAATTCTTAAACATCCAGTGCCAGCTCAGCAGACTCAAATACTCTTCCTTTGCTAAAAAGTGGATCAATATTCG s micMur1.scaffold_20543 5673 85 - 11586 TCATGGGATATGAGTAAGTTTCTGAACTTTCAGTG-GAACTCAGCAGGCTGAAATA---TCCTTTTGCCAAAAAGTGGATCAATATTTG i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157031 82 - 2194741 ---TGGGATATGAGTAAGTTCCTGAACATTCAGTGCTAACTCAGCAGGCTGATAT----CCTCTTTGCTAAAAAGTAGATCAATACTCG i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289848376 89 - 304825324 TCATGGGATATGAGTAAGTTCCTGAATATTCAGTGTCAAATCAGCAGGCTCAGATACCCTTCTTTTGCCAAAAAGTGGATCAATATTCG i monDom5.chr5 I 1 C 0 s sarHar1.chr6_GL864737_random 3668130 89 - 3706227 TCATGGGATATGAGTAAGTTCCTGAATATTCAGTGTCAAATCAGCAGGCTCAGATACCCTTCTTTTGCCAAAAAGTGGATCAATATTCG i sarHar1.chr6_GL864737_random I 1 C 0 s macEug2.GL127885 12157 89 - 223658 TCATGGGATATGAGTAAGTTCCTGAATATTCAGTGTCAGATCAGCAGGCTCAGATACCCTTCTTTTGCCAAAAAGTGGATCAATATTCG i macEug2.GL127885 I 4311 C 0 s ornAna1.Ultra173 3751489 89 - 3935469 TCATGGGATATGAGTAAATTCCTGACAATTCAGTGTCGGATCAGCCATCTCAAGTATCCTGCTTTCGCTAAGAAGTGGATCAACATCCG i ornAna1.Ultra173 I 3875 C 0 s melGal1.chr4 30754816 89 + 74864452 TCTTGGGATATGAGTAAATTTTTGAATATCCAGTGCCGTGTCAGCCGTATCAAACACCCTTCGTTTGCCAAGAAGTGGATCAATATTCG i melGal1.chr4 C 0 I 1 s galGal4.chr4 48933603 89 + 90216835 TCTTGGGATATGAGTAAATTTTTGAATATCCAGTGCCGTGTCAGCCGTATCAAACACCCTTCATTTGCCAAAAAGTGGATCAATATTCG i galGal4.chr4 C 0 I 1 s taeGut1.chr4 26467739 89 + 69780378 TCTTGGGATATGAGTAAATTTTTGAACACCCAGTGCCGTATTAGCCGCATCAAATACCCTTCTTTTGCCAAAAAGTGGATCAATATTCG i taeGut1.chr4 C 0 I 1 s melUnd1.JH556597 802227 89 - 11523850 TCTTGGGATATGAGTAAATTTCTGAACACCCAGTGCCGTATTAGCCGTATCAAATACCCTTCTTTTGCCAAAAGATGGATCAATATTCG i melUnd1.JH556597 C 0 I 1 s anoCar2.chrUn_GL343257 1173912 89 + 2017131 tcttgggatATGAGTAAATTTTTAAATATCCAGTGTCGTGTAAACCGTCTGAGATATCCTGCATTTGCTAAGAAGTGGATTAATATTCG i anoCar2.chrUn_GL343257 C 0 I 1 s chrPic1.JH584678 590405 89 + 1521786 TCTTGGGATATGAGTAAATTTCTGAATATCCAGTGCCGTATCAGCCGTATCAAATATCCCTCTTTTGCCAAAAAGTGGATCAACATTCG i chrPic1.JH584678 C 0 I 1 s xenTro3.GL173046 994773 89 + 1077291 TCCTGGGATATGAGCAAGTTTCTAAACATGCAGTGTCGTGTTAGTCGCCTAAAATACCCTCGATTTGCAAAGAAGTGGATCAACATTCG i xenTro3.GL173046 C 0 I 1 s latCha1.JH128645 102829 89 + 405459 TCATGGGATATGAGCAAGTTCCTGAATATTCAGTGCCGGTTATGTCACGTCCGATATCCCTTATTTGCCAAAAAGTGGGTCAATATAAG i latCha1.JH128645 I 1 C 0 s tetNig2.chr19 1594093 89 + 7272499 TCCTGGGACATGAGCAAGTTCCTCAACATCCAGTGTCAGATCAGCCGGATCAGATATCCCCAGTTTGCAAAGAAGTGGATTAATATAAG i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107563 89 + 8053132 tccTGGGATATGAGCAAGTTCCTCAACATCCAGTGTCAGATCAGCCGGATCAGATATCCTCAGTTTGCAAAGAAGTGGATAAACATAAG i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525022 89 - 31749960 TCGTGGGATATGAGCAAGTTCCTCAACATCCAGTGTCGGGTCAGCCGAATCAAATATCCTCCGTTTGCAAAGAAGTGGATAAACATAAG i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331521 89 + 32632948 GCCTGGGACATGAGCAAGTTCCTCAACATCCAGTGCCGGATCAGCCGGATCCGATACCCTCAGTTTGCGAAGAAGTGGATCAACATCAG i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20959968 89 + 24050845 TCGTGGGACATGAGCAAGTTCCTCAACATCCAGTGTCGGGTGAGCCGGATCCGATATCCTCAGTTTGCCAAGAAATGGATAAACATCAG i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01235922 508 89 - 1224 tcctgGGACATGAGCAAGTTCCTGAACATCCAGTGTCGCGTGAGCCGGATCAGGTATCCCCCGTTCGCCAAGAAGTGGATCAACATCAG i gadMor1.CAEA01235922 C 0 C 0 s danRer7.chr21 25805109 89 - 44544065 TCTTGGGACATGGGGAAATTTCTTCATACACAGTGCAAACTGAGTCGCATCAGATACCCACAGTTTGCCAGAAAATGGATCAATATCAG i danRer7.chr21 C 0 C 0 s petMar1.Contig552 19173 89 + 64836 TCCTGGGATATGGCACGGTTTTTAAACATCCAGTGCCAACTCAGCCAGCTGCCATACCCACGCTTTGCAAAGAAGTGGATAAACGTTCG i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e proCap1.scaffold_48533 5705 10904 - 16610 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=-3060.000000 s mm10.chrUn_GL456366 27902 1 + 47073 -A s micMur1.scaffold_20543 5758 1 - 11586 -A i micMur1.scaffold_20543 C 0 C 0 s proCap1.scaffold_48533 16609 1 - 16610 -A i proCap1.scaffold_48533 I 10904 N 0 s dasNov3.JH582505 157113 1 - 2194741 -A i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289848465 1 - 304825324 -A i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3668219 1 - 3706227 -A i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 12246 1 - 223658 -A i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3751578 1 - 3935469 -A i ornAna1.Ultra173 C 0 C 0 s latCha1.JH128645 102918 1 + 405459 -A i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1594182 1 + 7272499 -G i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107652 1 + 8053132 -G i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525111 1 - 31749960 -A i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331610 1 + 32632948 -G i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20960057 1 + 24050845 -G i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01235922 597 1 - 1224 -G i gadMor1.CAEA01235922 C 0 C 0 s danRer7.chr21 25805198 1 - 44544065 -A i danRer7.chr21 C 0 C 0 s petMar1.Contig552 19262 1 + 64836 C- i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e taeGut1.chr4 26467828 1 + 69780378 I e chrPic1.JH584678 590494 1 + 1521786 I e melUnd1.JH556597 802316 1 - 11523850 I e xenTro3.GL173046 994862 1 + 1077291 I e galGal4.chr4 48933692 1 + 90216835 I e melGal1.chr4 30754905 1 + 74864452 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e anoCar2.chrUn_GL343257 1174001 1 + 2017131 I e rn5.chr7 143074480 36791 + 143501887 I a score=266796.000000 s mm10.chrUn_GL456366 27903 17 + 47073 AAGTCATACAGAAACTT s micMur1.scaffold_20543 5759 17 - 11586 AAGTCATATGGAAACTT i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157114 17 - 2194741 AAGTCTTACGAAAACTT i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289848466 17 - 304825324 AAGTCATATGGAAACTT i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3668220 17 - 3706227 AAGTCATATGGAAACTT i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 12247 17 - 223658 AAGTCATATGGAAACTT i macEug2.GL127885 C 0 I 4108 s ornAna1.Ultra173 3751579 17 - 3935469 AAATCTTATGGAAACTT i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30754906 17 + 74864452 AAATCGTATGGCAACTT i melGal1.chr4 I 1 C 0 s galGal4.chr4 48933693 17 + 90216835 AAATCATATGGCAACTT i galGal4.chr4 I 1 C 0 s taeGut1.chr4 26467829 17 + 69780378 AAATCATATGGGAACTT i taeGut1.chr4 I 1 C 0 s melUnd1.JH556597 802317 17 - 11523850 AAATCATATGGGAACTT i melUnd1.JH556597 I 1 C 0 s anoCar2.chrUn_GL343257 1174002 17 + 2017131 AAATCCTATGGGAATTT i anoCar2.chrUn_GL343257 I 1 C 0 s chrPic1.JH584678 590495 17 + 1521786 AAATCCTATGGAAACTT i chrPic1.JH584678 I 1 C 0 s xenTro3.GL173046 994863 17 + 1077291 AAATCTTATGGGAATTT i xenTro3.GL173046 I 1 C 0 s latCha1.JH128645 102919 17 + 405459 AAATCTTATGGGAATTT i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1594183 17 + 7272499 AAAGCTTACAGGAACTT i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107653 17 + 8053132 AAATCTTACAGAAACTT i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525112 17 - 31749960 AAGTCATACGGAAACTT i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331611 17 + 32632948 AAATCATACGGGAACTT i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20960058 17 + 24050845 AAATCATACGGCAACTT i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01235922 598 17 - 1224 AAGTCCTACGGCAACTT i gadMor1.CAEA01235922 C 0 C 0 s danRer7.chr21 25805199 17 - 44544065 AAGTCTTATGGGAATTT i danRer7.chr21 C 0 C 0 s petMar1.Contig552 19263 17 + 64836 AAAACCTTTTGCTACTT i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=7865.000000 s mm10.chrUn_GL456366 27920 1 + 47073 T s micMur1.scaffold_20543 5776 1 - 11586 T i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157131 1 - 2194741 T i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289848483 1 - 304825324 T i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3668237 1 - 3706227 T i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16372 1 - 223658 T i macEug2.GL127885 I 4108 C 0 s ornAna1.Ultra173 3751596 1 - 3935469 C i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30754923 1 + 74864452 C i melGal1.chr4 C 0 C 0 s galGal4.chr4 48933710 1 + 90216835 C i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26467846 1 + 69780378 C i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 802334 1 - 11523850 C i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1174019 1 + 2017131 C i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 590512 1 + 1521786 C i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 994880 1 + 1077291 C i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 102936 1 + 405459 T i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1594200 1 + 7272499 C i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107670 1 + 8053132 C i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525129 1 - 31749960 C i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331628 1 + 32632948 C i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20960075 1 + 24050845 T i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01235922 615 1 - 1224 T i gadMor1.CAEA01235922 C 0 C 0 s danRer7.chr21 25805216 1 - 44544065 T i danRer7.chr21 C 0 I 2635 s petMar1.Contig552 19280 1 + 64836 C i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=129201.000000 s mm10.chrUn_GL456366 27921 7 + 47073 TCTAAGG s micMur1.scaffold_20543 5777 7 - 11586 TGCAAGG i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157132 7 - 2194741 TACAAGG i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289848484 7 - 304825324 TACAAGG i monDom5.chr5 C 0 I 2308 s sarHar1.chr6_GL864737_random 3668238 7 - 3706227 TACAAgg i sarHar1.chr6_GL864737_random C 0 I 2540 s macEug2.GL127885 16373 7 - 223658 TCCCAGG i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3751597 7 - 3935469 TACAAGG i ornAna1.Ultra173 C 0 I 29 s melGal1.chr4 30754924 7 + 74864452 TACAAGG i melGal1.chr4 C 0 I 1758 s galGal4.chr4 48933711 7 + 90216835 TATAAGG i galGal4.chr4 C 0 I 1881 s taeGut1.chr4 26467847 7 + 69780378 TACAAGG i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 802335 7 - 11523850 TATAAGG i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1174020 7 + 2017131 TACAAGG i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 590513 7 + 1521786 TACAAGG i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 994881 7 + 1077291 TACAAGG i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 102937 7 + 405459 Tacaagg i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1594201 7 + 7272499 TACAAGG i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107671 7 + 8053132 TACAAGG i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525130 7 - 31749960 TACAAGG i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331629 7 + 32632948 TACAAGG i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20960076 7 + 24050845 TACAAGG i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01235922 616 7 - 1224 TACAAGG i gadMor1.CAEA01235922 C 0 C 0 s danRer7.chr21 25807852 7 - 44544065 TCTCAGG i danRer7.chr21 I 2635 C 0 s petMar1.Contig552 19281 7 + 64836 TTTAAGG i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=20339.000000 s mm10.chrUn_GL456366 27928 1 + 47073 T s micMur1.scaffold_20543 5784 1 - 11586 T i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157139 1 - 2194741 T i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289850799 1 - 304825324 T i monDom5.chr5 I 2308 C 0 s sarHar1.chr6_GL864737_random 3670785 1 - 3706227 T i sarHar1.chr6_GL864737_random I 2540 C 0 s macEug2.GL127885 16380 1 - 223658 T i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3751633 1 - 3935469 C i ornAna1.Ultra173 I 29 C 0 s melGal1.chr4 30756689 1 + 74864452 T i melGal1.chr4 I 1758 C 0 s galGal4.chr4 48935599 1 + 90216835 T i galGal4.chr4 I 1881 C 0 s taeGut1.chr4 26467854 1 + 69780378 T i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 802342 1 - 11523850 T i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1174027 1 + 2017131 T i anoCar2.chrUn_GL343257 C 0 I 1946 s chrPic1.JH584678 590520 1 + 1521786 T i chrPic1.JH584678 C 0 I 1967 s xenTro3.GL173046 994888 1 + 1077291 T i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 102944 1 + 405459 t i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1594208 1 + 7272499 T i tetNig2.chr19 C 0 C 0 s fr3.chr18 3107678 1 + 8053132 T i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525137 1 - 31749960 T i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331636 1 + 32632948 T i gasAcu1.chrIV C 0 C 0 s oryLat2.chr23 20960083 1 + 24050845 T i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01235922 623 1 - 1224 T i gadMor1.CAEA01235922 C 0 C 0 s danRer7.chr21 25807859 1 - 44544065 T i danRer7.chr21 C 0 C 0 s petMar1.Contig552 19288 1 + 64836 T i petMar1.Contig552 C 0 I 4260 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=7472.000000 s mm10.chrUn_GL456366 27929 1 + 47073 T s micMur1.scaffold_20543 5785 1 - 11586 T i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157140 1 - 2194741 T i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289850800 1 - 304825324 T i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3670786 1 - 3706227 T i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16381 1 - 223658 T i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3751634 1 - 3935469 T i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30756690 1 + 74864452 T i melGal1.chr4 C 0 C 0 s galGal4.chr4 48935600 1 + 90216835 T i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26467855 1 + 69780378 T i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 802343 1 - 11523850 T i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1175974 1 + 2017131 T i anoCar2.chrUn_GL343257 I 1946 C 0 s chrPic1.JH584678 592488 1 + 1521786 T i chrPic1.JH584678 I 1967 C 0 s xenTro3.GL173046 994889 1 + 1077291 T i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 102945 1 + 405459 t i latCha1.JH128645 C 0 I 6880 s fr3.chr18 3107679 1 + 8053132 T i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525138 1 - 31749960 a i oreNil2.chrLG17 C 0 C 0 s gasAcu1.chrIV 32331637 1 + 32632948 T i gasAcu1.chrIV C 0 N 0 s oryLat2.chr23 20960084 1 + 24050845 A i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01235922 624 1 - 1224 G i gadMor1.CAEA01235922 C 0 C 0 s danRer7.chr21 25807860 1 - 44544065 T i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e tetNig2.chr19 1594209 0 + 7272499 C e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=10785.000000 s mm10.chrUn_GL456366 27930 1 + 47073 C s micMur1.scaffold_20543 5786 1 - 11586 C i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157141 1 - 2194741 C i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289850801 1 - 304825324 C i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3670787 1 - 3706227 C i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16382 1 - 223658 C i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3751635 1 - 3935469 C i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30756691 1 + 74864452 C i melGal1.chr4 C 0 C 0 s galGal4.chr4 48935601 1 + 90216835 C i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26467856 1 + 69780378 T i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 802344 1 - 11523850 T i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1175975 1 + 2017131 C i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 592489 1 + 1521786 C i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 994890 1 + 1077291 T i xenTro3.GL173046 C 0 C 0 s fr3.chr18 3107680 1 + 8053132 C i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525139 1 - 31749960 c i oreNil2.chrLG17 C 0 I 509 s oryLat2.chr23 20960085 1 + 24050845 C i oryLat2.chr23 C 0 C 0 s gadMor1.CAEA01235922 625 1 - 1224 C i gadMor1.CAEA01235922 C 0 N 0 s danRer7.chr21 25807861 1 - 44544065 C i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e tetNig2.chr19 1594209 0 + 7272499 C e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=2281.000000 s mm10.chrUn_GL456366 27931 4 + 47073 CC------AG s micMur1.scaffold_20543 5787 4 - 11586 CT------AG i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157142 4 - 2194741 CT------AG i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289850802 4 - 304825324 CT------CG i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3670788 4 - 3706227 CT------CG i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16383 4 - 223658 CT------CG i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3751636 10 - 3935469 CTGATTTCAG i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30756692 4 + 74864452 CC------AG i melGal1.chr4 C 0 C 0 s galGal4.chr4 48935602 4 + 90216835 CC------AG i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26467857 4 + 69780378 GT------AC i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 802345 4 - 11523850 GT------AC i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1175976 4 + 2017131 CT------AG i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 592490 4 + 1521786 CC------AG i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 994891 4 + 1077291 GT------AC i xenTro3.GL173046 C 0 C 0 s fr3.chr18 3107681 2 + 8053132 --------AG i fr3.chr18 C 0 I 601 s oryLat2.chr23 20960086 2 + 24050845 --------AG i oryLat2.chr23 C 0 N 0 s danRer7.chr21 25807862 4 - 44544065 CT------CG i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e tetNig2.chr19 1594209 0 + 7272499 C e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=-5243.000000 s mm10.chrUn_GL456366 27935 1 + 47073 -A s micMur1.scaffold_20543 5791 1 - 11586 -A i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157146 1 - 2194741 -A i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289850806 1 - 304825324 -G i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3670792 1 - 3706227 -G i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16387 1 - 223658 -A i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3751646 1 - 3935469 -T i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30756696 1 + 74864452 -G i melGal1.chr4 C 0 C 0 s galGal4.chr4 48935606 1 + 90216835 -G i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26467861 1 + 69780378 -A i taeGut1.chr4 C 0 I 1173 s melUnd1.JH556597 802349 1 - 11523850 -A i melUnd1.JH556597 C 0 I 1859 s anoCar2.chrUn_GL343257 1175980 1 + 2017131 -A i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 592494 1 + 1521786 -A i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 994895 1 + 1077291 -A i xenTro3.GL173046 C 0 C 0 s danRer7.chr21 25807866 1 - 44544065 T- i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e fr3.chr18 3107683 601 + 8053132 I e tetNig2.chr19 1594209 0 + 7272499 C e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=5088.000000 s mm10.chrUn_GL456366 27936 1 + 47073 A s micMur1.scaffold_20543 5792 1 - 11586 A i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157147 1 - 2194741 G i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289850807 1 - 304825324 A i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3670793 1 - 3706227 A i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16388 1 - 223658 A i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3751647 1 - 3935469 C i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30756697 1 + 74864452 A i melGal1.chr4 C 0 C 0 s galGal4.chr4 48935607 1 + 90216835 A i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469035 1 + 69780378 A i taeGut1.chr4 I 1173 C 0 s melUnd1.JH556597 804209 1 - 11523850 A i melUnd1.JH556597 I 1859 C 0 s anoCar2.chrUn_GL343257 1175981 1 + 2017131 A i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 592495 1 + 1521786 A i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 994896 1 + 1077291 A i xenTro3.GL173046 C 0 I 408 s danRer7.chr21 25807867 1 - 44544065 A i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e fr3.chr18 3107683 601 + 8053132 I e tetNig2.chr19 1594209 0 + 7272499 C e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=133829.000000 s mm10.chrUn_GL456366 27937 29 + 47073 GCCAGA----CCAAACTAACAATAATGCTTGAA s micMur1.scaffold_20543 5793 29 - 11586 GCCAAA----CCAAACTGACAATAATGCTTGAA i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157148 29 - 2194741 GCCAAA----TGAAATTGACAATAATGCTTGAA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289850808 29 - 304825324 ACCAGA----CCAAGCTGACCATCATGCTTGAA i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3670794 29 - 3706227 ACCAGA----CTAAGCTGACCATCATGCTTGAA i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16389 29 - 223658 ACCAGA----CCAAGCTGACTATCATGCTTGAA i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3751648 29 - 3935469 ATAAGA----GCAAGCAAGCTGTGGTGCCCCCA i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30756698 29 + 74864452 ACCAGA----CCAAGCTGATGATCATGCTTGAA i melGal1.chr4 C 0 C 0 s galGal4.chr4 48935608 29 + 90216835 ACCAGA----CCAAGCTGATGATCATGCTTGAA i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469036 29 + 69780378 ACCAGA----CCAAACTGACAATCATGCTTGAA i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 804210 29 - 11523850 ACCAGA----CCAAGCTAACAATGATGCTTGAA i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1175982 29 + 2017131 ACCAAA----CTAAACTATCAACCATGCTTGAG i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 592496 29 + 1521786 ACCAGA----CCAAGCTAACAATCATGCTTGAA i chrPic1.JH584678 C 0 C 0 s tetNig2.chr19 1594209 22 + 7272499 --CAGGCTTTCAATACTG--------TCTGGA- i tetNig2.chr19 C 0 I 273 s danRer7.chr21 25807868 29 - 44544065 CTCAGA----CGAAACTGATCTGCATGCTGGAG i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e fr3.chr18 3107683 601 + 8053132 I e xenTro3.GL173046 994897 408 + 1077291 I e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=14976.000000 s mm10.chrUn_GL456366 27966 2 + 47073 AA s micMur1.scaffold_20543 5822 2 - 11586 AG i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157177 2 - 2194741 AA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289850837 2 - 304825324 AA i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3670823 2 - 3706227 AA i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16418 2 - 223658 AA i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3751677 2 - 3935469 AA i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30756727 2 + 74864452 AA i melGal1.chr4 C 0 C 0 s galGal4.chr4 48935637 2 + 90216835 AA i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469065 2 + 69780378 AA i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 804239 2 - 11523850 AA i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1176011 2 + 2017131 AA i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 592525 2 + 1521786 AA i chrPic1.JH584678 C 0 C 0 s danRer7.chr21 25807897 2 - 44544065 AA i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e fr3.chr18 3107683 601 + 8053132 I e tetNig2.chr19 1594231 273 + 7272499 I e xenTro3.GL173046 994897 408 + 1077291 I e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=6867.000000 s mm10.chrUn_GL456366 27968 3 + 47073 ATT s micMur1.scaffold_20543 5824 3 - 11586 ATT i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157179 3 - 2194741 ACT i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289850839 3 - 304825324 GCT i monDom5.chr5 C 0 I 1 s sarHar1.chr6_GL864737_random 3670825 3 - 3706227 GCT i sarHar1.chr6_GL864737_random C 0 I 1 s macEug2.GL127885 16420 3 - 223658 GCT i macEug2.GL127885 C 0 I 1 s ornAna1.Ultra173 3751679 3 - 3935469 GTA i ornAna1.Ultra173 C 0 C 0 s galGal4.chr4 48935639 3 + 90216835 GCT i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469067 3 + 69780378 TCT i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 804241 3 - 11523850 TCT i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1176013 3 + 2017131 GCT i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 592527 3 + 1521786 GCT i chrPic1.JH584678 C 0 C 0 s danRer7.chr21 25807899 3 - 44544065 TCT i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e fr3.chr18 3107683 601 + 8053132 I e tetNig2.chr19 1594231 273 + 7272499 I e xenTro3.GL173046 994897 408 + 1077291 I e melGal1.chr4 30756729 0 + 74864452 C e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=-870.000000 s mm10.chrUn_GL456366 27971 1 + 47073 A s dasNov3.JH582505 157182 1 - 2194741 T i dasNov3.JH582505 C 0 C 0 s ornAna1.Ultra173 3751682 1 - 3935469 A i ornAna1.Ultra173 C 0 C 0 s galGal4.chr4 48935642 1 + 90216835 G i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469070 1 + 69780378 G i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 804244 1 - 11523850 G i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1176016 1 + 2017131 T i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 592530 1 + 1521786 G i chrPic1.JH584678 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e fr3.chr18 3107683 601 + 8053132 I e tetNig2.chr19 1594231 273 + 7272499 I e danRer7.chr21 25807902 0 - 44544065 C e xenTro3.GL173046 994897 408 + 1077291 I e melGal1.chr4 30756729 0 + 74864452 C e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289850842 1 - 304825324 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e macEug2.GL127885 16423 1 - 223658 I e sarHar1.chr6_GL864737_random 3670828 1 - 3706227 I e micMur1.scaffold_20543 5827 0 - 11586 C e rn5.chr7 143074480 36791 + 143501887 I a score=-513.000000 s mm10.chrUn_GL456366 27972 6 + 47073 ----GGAATt---- s dasNov3.JH582505 157183 6 - 2194741 ----GGAATG---- i dasNov3.JH582505 C 0 I 412 s ornAna1.Ultra173 3751683 14 - 3935469 AGCTAAAATGAGAT i ornAna1.Ultra173 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e fr3.chr18 3107683 601 + 8053132 I e tetNig2.chr19 1594231 273 + 7272499 I e taeGut1.chr4 26469071 0 + 69780378 C e danRer7.chr21 25807902 0 - 44544065 C e chrPic1.JH584678 592531 0 + 1521786 C e melUnd1.JH556597 804245 0 - 11523850 C e xenTro3.GL173046 994897 408 + 1077291 I e galGal4.chr4 48935643 0 + 90216835 C e melGal1.chr4 30756729 0 + 74864452 C e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289850842 1 - 304825324 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e macEug2.GL127885 16423 1 - 223658 I e anoCar2.chrUn_GL343257 1176017 0 + 2017131 C e sarHar1.chr6_GL864737_random 3670828 1 - 3706227 I e micMur1.scaffold_20543 5827 0 - 11586 C e rn5.chr7 143074480 36791 + 143501887 I a score=584.000000 s mm10.chrUn_GL456366 27978 79 + 47073 gtggggagtggggt-gtggcggcagtcccaaaggcgccagggactgcagctaagtcatatgacttgcacctgacttcctc s ornAna1.Ultra173 3751697 77 - 3935469 GTGGAAAATGGAGTCGTAAACTGTGGCCCGATGGAAC---GGCCTGTTCCTGAAACCTTTGCCACACAATTGACTCTTTC i ornAna1.Ultra173 C 0 I 1063 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e fr3.chr18 3107683 601 + 8053132 I e tetNig2.chr19 1594231 273 + 7272499 I e taeGut1.chr4 26469071 0 + 69780378 C e danRer7.chr21 25807902 0 - 44544065 C e chrPic1.JH584678 592531 0 + 1521786 C e melUnd1.JH556597 804245 0 - 11523850 C e xenTro3.GL173046 994897 408 + 1077291 I e galGal4.chr4 48935643 0 + 90216835 C e melGal1.chr4 30756729 0 + 74864452 C e dasNov3.JH582505 157189 412 - 2194741 I e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289850842 1 - 304825324 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e macEug2.GL127885 16423 1 - 223658 I e anoCar2.chrUn_GL343257 1176017 0 + 2017131 C e sarHar1.chr6_GL864737_random 3670828 1 - 3706227 I e micMur1.scaffold_20543 5827 0 - 11586 C e rn5.chr7 143074480 36791 + 143501887 I a score=0.000000 s mm10.chrUn_GL456366 28057 255 + 47073 atataagacacaaacatcttgagtgctgcgcaggtgtaccaggatacaggtgaatccaatttggtggagatttgcccctgctgccctgattagctgaagcctcgtgactggcgagggggcgtggcctgcggtgcgtggatgagagagagagtataaaaggagtgagaggcccagggttcgggggagatataaacaagaagaatcaggactgaataaactgctgttagaaggactggtggtcgcgttgttcttgct e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e fr3.chr18 3107683 601 + 8053132 I e tetNig2.chr19 1594231 273 + 7272499 I e taeGut1.chr4 26469071 0 + 69780378 C e danRer7.chr21 25807902 0 - 44544065 C e chrPic1.JH584678 592531 0 + 1521786 C e melUnd1.JH556597 804245 0 - 11523850 C e ornAna1.Ultra173 3751774 1063 - 3935469 I e xenTro3.GL173046 994897 408 + 1077291 I e galGal4.chr4 48935643 0 + 90216835 C e melGal1.chr4 30756729 0 + 74864452 C e dasNov3.JH582505 157189 412 - 2194741 I e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289850842 1 - 304825324 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e macEug2.GL127885 16423 1 - 223658 I e anoCar2.chrUn_GL343257 1176017 0 + 2017131 C e sarHar1.chr6_GL864737_random 3670828 1 - 3706227 I e micMur1.scaffold_20543 5827 0 - 11586 C e rn5.chr7 143074480 36791 + 143501887 I a score=224.000000 s mm10.chrUn_GL456366 28312 7 + 47073 ggtcgag s dasNov3.JH582505 157601 7 - 2194741 gggtggg i dasNov3.JH582505 I 412 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e fr3.chr18 3107683 601 + 8053132 I e tetNig2.chr19 1594231 273 + 7272499 I e taeGut1.chr4 26469071 0 + 69780378 C e danRer7.chr21 25807902 0 - 44544065 C e chrPic1.JH584678 592531 0 + 1521786 C e melUnd1.JH556597 804245 0 - 11523850 C e ornAna1.Ultra173 3751774 1063 - 3935469 I e xenTro3.GL173046 994897 408 + 1077291 I e galGal4.chr4 48935643 0 + 90216835 C e melGal1.chr4 30756729 0 + 74864452 C e latCha1.JH128645 102946 6880 + 405459 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289850842 1 - 304825324 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e macEug2.GL127885 16423 1 - 223658 I e anoCar2.chrUn_GL343257 1176017 0 + 2017131 C e sarHar1.chr6_GL864737_random 3670828 1 - 3706227 I e micMur1.scaffold_20543 5827 0 - 11586 C e rn5.chr7 143074480 36791 + 143501887 I a score=273.000000 s mm10.chrUn_GL456366 28319 1 + 47073 a s dasNov3.JH582505 157608 1 - 2194741 a i dasNov3.JH582505 C 0 C 0 s latCha1.JH128645 109826 1 + 405459 A i latCha1.JH128645 I 6880 I 4 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e petMar1.Contig552 19289 4260 + 64836 I e oreNil2.chrLG17 15525140 509 - 31749960 I e fr3.chr18 3107683 601 + 8053132 I e tetNig2.chr19 1594231 273 + 7272499 I e taeGut1.chr4 26469071 0 + 69780378 C e danRer7.chr21 25807902 0 - 44544065 C e chrPic1.JH584678 592531 0 + 1521786 C e melUnd1.JH556597 804245 0 - 11523850 C e ornAna1.Ultra173 3751774 1063 - 3935469 I e xenTro3.GL173046 994897 408 + 1077291 I e galGal4.chr4 48935643 0 + 90216835 C e melGal1.chr4 30756729 0 + 74864452 C e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289850842 1 - 304825324 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e macEug2.GL127885 16423 1 - 223658 I e anoCar2.chrUn_GL343257 1176017 0 + 2017131 C e sarHar1.chr6_GL864737_random 3670828 1 - 3706227 I e micMur1.scaffold_20543 5827 0 - 11586 C e rn5.chr7 143074480 36791 + 143501887 I a score=8472.000000 s mm10.chrUn_GL456366 28320 9 + 47073 gcgggcgcg s dasNov3.JH582505 157609 9 - 2194741 ggggaaggg i dasNov3.JH582505 C 0 C 0 s ornAna1.Ultra173 3752837 9 - 3935469 GCTGGAAAA i ornAna1.Ultra173 I 1063 C 0 s xenTro3.GL173046 995305 9 + 1077291 GCTGGAAAA i xenTro3.GL173046 I 408 C 0 s latCha1.JH128645 109831 5 + 405459 GCTTG---- i latCha1.JH128645 I 4 I 2 s tetNig2.chr19 1594504 9 + 7272499 GCTGGAGAA i tetNig2.chr19 I 273 C 0 s fr3.chr18 3108284 9 + 8053132 GCTGGAGAA i fr3.chr18 I 601 C 0 s oreNil2.chrLG17 15525649 9 - 31749960 GCTGGAGAA i oreNil2.chrLG17 I 509 C 0 s petMar1.Contig552 23549 9 + 64836 GCTGGAGTG i petMar1.Contig552 I 4260 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e taeGut1.chr4 26469071 0 + 69780378 C e danRer7.chr21 25807902 0 - 44544065 C e chrPic1.JH584678 592531 0 + 1521786 C e melUnd1.JH556597 804245 0 - 11523850 C e galGal4.chr4 48935643 0 + 90216835 C e melGal1.chr4 30756729 0 + 74864452 C e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289850842 1 - 304825324 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e macEug2.GL127885 16423 1 - 223658 I e anoCar2.chrUn_GL343257 1176017 0 + 2017131 C e sarHar1.chr6_GL864737_random 3670828 1 - 3706227 I e micMur1.scaffold_20543 5827 0 - 11586 C e rn5.chr7 143074480 36791 + 143501887 I a score=-6480.000000 s mm10.chrUn_GL456366 28329 3 + 47073 aca- s dasNov3.JH582505 157618 3 - 2194741 gag- i dasNov3.JH582505 C 0 C 0 s ornAna1.Ultra173 3752846 3 - 3935469 GCT- i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30756729 3 + 74864452 ACT- i melGal1.chr4 C 0 C 0 s xenTro3.GL173046 995314 3 + 1077291 ATT- i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 109838 1 + 405459 A--- i latCha1.JH128645 I 2 C 0 s tetNig2.chr19 1594513 3 + 7272499 GCT- i tetNig2.chr19 C 0 C 0 s fr3.chr18 3108293 3 + 8053132 GTT- i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525658 3 - 31749960 ACT- i oreNil2.chrLG17 C 0 C 0 s petMar1.Contig552 23558 3 + 64836 -CTT i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e taeGut1.chr4 26469071 0 + 69780378 C e danRer7.chr21 25807902 0 - 44544065 C e chrPic1.JH584678 592531 0 + 1521786 C e melUnd1.JH556597 804245 0 - 11523850 C e galGal4.chr4 48935643 0 + 90216835 C e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289850842 1 - 304825324 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e macEug2.GL127885 16423 1 - 223658 I e anoCar2.chrUn_GL343257 1176017 0 + 2017131 C e sarHar1.chr6_GL864737_random 3670828 1 - 3706227 I e micMur1.scaffold_20543 5827 0 - 11586 C e rn5.chr7 143074480 36791 + 143501887 I a score=447.000000 s mm10.chrUn_GL456366 28332 1 + 47073 A s micMur1.scaffold_20543 5827 1 - 11586 A i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157621 1 - 2194741 a i dasNov3.JH582505 C 0 C 0 s ornAna1.Ultra173 3752849 1 - 3935469 G i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30756732 1 + 74864452 G i melGal1.chr4 C 0 C 0 s xenTro3.GL173046 995317 1 + 1077291 G i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 109839 1 + 405459 A i latCha1.JH128645 C 0 I 4 s tetNig2.chr19 1594516 1 + 7272499 G i tetNig2.chr19 C 0 C 0 s fr3.chr18 3108296 1 + 8053132 G i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525661 1 - 31749960 C i oreNil2.chrLG17 C 0 C 0 s danRer7.chr21 25807902 1 - 44544065 G i danRer7.chr21 C 0 C 0 s petMar1.Contig552 23561 1 + 64836 G i petMar1.Contig552 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e taeGut1.chr4 26469071 0 + 69780378 C e chrPic1.JH584678 592531 0 + 1521786 C e melUnd1.JH556597 804245 0 - 11523850 C e galGal4.chr4 48935643 0 + 90216835 C e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289850842 1 - 304825324 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e macEug2.GL127885 16423 1 - 223658 I e anoCar2.chrUn_GL343257 1176017 0 + 2017131 C e sarHar1.chr6_GL864737_random 3670828 1 - 3706227 I e rn5.chr7 143074480 36791 + 143501887 I a score=555131.000000 s mm10.chrUn_GL456366 28333 67 + 47073 GGAATGAATTATGATGGACGGCCTCACAGCGGTCTTGATGACTCT-------------AAGAACATTGCTAGAATAGCAG s micMur1.scaffold_20543 5828 67 - 11586 GGAATGGATTATGATGGGCGGCCTCACAGTGGTCTCGATGACTCT-------------AAGAACATCACCCGAATAGCAA i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157622 54 - 2194741 gaaataaataa--------------------------ataaatctttaaaaaAAAAAAAAGAAAAATATCAGAATAACAG i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289850843 67 - 304825324 GGGATGAGTTATGACGGCCGGCCCCACAGCGGCCTTGATGACTCC-------------AAGAACATCGCCCGCATCGCAG i monDom5.chr5 I 1 C 0 s sarHar1.chr6_GL864737_random 3670829 67 - 3706227 GGGATGAGTTACGATGGGCGGCCCCACAGTGGCCTGGACGACTCC-------------AAGAACATCGCCCGCATCGCGG i sarHar1.chr6_GL864737_random I 1 C 0 s macEug2.GL127885 16424 67 - 223658 GGCATGAGCTATGACGGGCGGCCCCACAGCGGCCTGGATGACTCC-------------CAGAACATTGCGCGCATCGCAG i macEug2.GL127885 I 1 C 0 s ornAna1.Ultra173 3752850 67 - 3935469 GGGATGAGCTACGCCGGTCGGCCCCACAGCGGCCTGGATGACTCC-------------AAGAACATCGCCCGCATCGCCG i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30756733 67 + 74864452 GGCATGAGCTATGATGGGAGACCTCACAGTGGACTCGATGACTCT-------------AAAAACATTGCAAGGATTGCTA i melGal1.chr4 C 0 C 0 s galGal4.chr4 48935643 67 + 90216835 GGCATGAGCTACGATGGGAGACCTCACAGTGGACTCGATGACTCT-------------AAAAACATTGCAAGGATCGCTA i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469071 67 + 69780378 GGCATGAATTATGATGGGAGACCTCACAGTGGACTTGATGACTCC-------------AAAAACATTGCAAGGATAGCTA i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 804245 67 - 11523850 GGTATGAATTATGATGGGAGACCTCACAGTGGACTTGATGATTCT-------------AAAAACATTGCAAGGATAGCTA i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1176017 67 + 2017131 GGAATGGACTATGATGGCCGGCCTCACAGTGGACTTGATGATTCT-------------AGGAACATTGCACAAATAGCAA i anoCar2.chrUn_GL343257 C 0 C 0 s chrPic1.JH584678 592531 67 + 1521786 GGAATGAACTATGATGGGCGTCCTCATAGCGGACTTGATGACTCT-------------AAGAACATTGCACGGATAGCTA i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 995318 67 + 1077291 GGCATGACCTATGATGGACGTCTGCACAGTGGCGTGGATGATTCT-------------AAGAACATTGCTCGCATTGCAG i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 109844 67 + 405459 GGAATGAAATATGAAGGTAGACTTCACTGTGGGCTTGATGACTCC-------------AGAAATATTGCTCGGATTGCTA i latCha1.JH128645 I 4 C 0 s tetNig2.chr19 1594517 67 + 7272499 GGTCTGACCTACAACGGTCGTCCTCACTGCGGCCTGGATGATTCG-------------CGCAACATTGCCAGGATAGCTG i tetNig2.chr19 C 0 C 0 s fr3.chr18 3108297 67 + 8053132 GGTCTGACGTACAGCGGTCGTCCTCACTGTGGCCTGGATGATTCG-------------CGCAACATTGCCAGGATAGCTG i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525662 67 - 31749960 GGCCTGACGTACGAAGGTCGTCCTCACTCCGGGCTTGACGACTCA-------------CGCAACATAGCGAGGATAGCTG i oreNil2.chrLG17 C 0 C 0 s danRer7.chr21 25807903 67 - 44544065 GGGATGGAGTATGATGGACGTCCGCACTGTGGTCTAGATGACTCA-------------CGCAACATTGCCAGAATCGCCA i danRer7.chr21 C 0 C 0 s petMar1.Contig552 23562 67 + 64836 GAGCTGCAGCCCGAGGGCCGAGCTCACAGCGGCCTGGATGACTCC-------------CGGAACATCGCGCGGGTGGCGG i petMar1.Contig552 C 0 N 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=838825.000000 s mm10.chrUn_GL456366 28400 99 + 47073 TTCAGATGCTTCAGGA-----------------TCAATAAAAAAAATACTTGGAGGACAGCTGATGAGTGTGTCGTCATCCTTACCAGTAGAGGGCGCTCCAGCTCCACAGATGCC s micMur1.scaffold_20543 5895 116 - 11586 TTCAAATGCTTCAGGATGGATGTAAACTCTGGGTCAATGAAAGAAATGCATGCAGGACAGCTAATGAGTGTGTCCTCTTCCTTACCAGTAGAGGGCACTCTGCCTCCACAAATGCC i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157676 115 - 2194741 TTCGAATACTTCAGGATGGATGTGAACTCTGAATTAATGAGA-AGATGCATTCAGGATTGCTTATGAGTGTGTCCTCTTCTGTACCAGTAGAGGGCACTCCAGCTCCACAAATGTC i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289850910 115 - 304825324 TGCGCATGCTCCGGGATGGCTGTGAGCTGCGGGTCAATGAGA-AGATGCATGGGGGGCAGCTCACAAGCGTGTCCTCCTCTTCACCTGTAGAGGGCGCCCCAGCCCCACAGATGCC i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3670896 115 - 3706227 TCCGCATGCTCCGCGACGGCTGTGAGCTGCGGGTCAATGAGA-AGATGCATGGAGGGCAGCTCACGAGTGTGTCCTCATCGTCACCCGTAGAGGGCGCCCCAGCCCCACAGATGCC i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16491 115 - 223658 TGCGAATGCTCCGGGATGGCTGCGAACTGCGGGTCAATGAGA-AGATGCACGGGGGCCAGCTCACGAGTGTGTCCTCATCTTCACCTGTAGAGGGCGCCCCTGCCCCACAGATGCC i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3752917 115 - 3935469 TGCGCATGCTCCAGGATGGTTGCCAGCTGCGTGTCAACGAGA-AGATGCACGCCGGCCAGCTCACCAGCGTCACTTCGGCCACCCCCATAGAGGGCATGCCTGCCCCAAACATGCC i ornAna1.Ultra173 C 0 C 0 s melGal1.chr4 30756800 115 + 74864452 TAAGGATGCTGCAGGATGGCTGTCAGCTGCGGGTGAATGAGA-AAATGCATGCGGGACAGCTTATGACAGTCTCCTCCTCTGCTCCCTTAGAGGGAGCCCCAGCTCCACAGATGCC i melGal1.chr4 C 0 C 0 s galGal4.chr4 48935710 115 + 90216835 TAAGGATGCTGCAGGATGGCTGTCAGCTGCGGGTGAATGAGA-AGATGCATGCAGGACAGCTTATGACAGTCTCCTCCTCCACTCCTTTAGAGGGAGCCCCAGCTCCACAGATGCC i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469138 115 + 69780378 TAAGGATGCTGCAGGATGGCTGTGACCTGCGGGTGAACGAGA-GAATTCACGGTGGACAGCTGATGACAGTCTCCTCCTCAGTCCCCTTAGAGGGAGCCCCTGCTCCACAGATGCC i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 804312 115 - 11523850 TAAGGATGCTACAGGATGGCTGTGAACTGCGGGTGAATGAGA-GAATGCATGCTGGACAACTTATGACAGTCTCCTCCTTGGCCCCCTTAGAGGGAGCCCCTGCTCCACAGATGCC i melUnd1.JH556597 C 0 C 0 s anoCar2.chrUn_GL343257 1176084 115 + 2017131 TTCGTATGCTCCAGGATGGATGTGAGCTCCGGGTGAATGAGA-CGTTGTACGATGGACAGCTGATGACAGTCCCTTCCTCTGTTCCAATAGGAGGCGCTCCTGTACCACAGATGCC i anoCar2.chrUn_GL343257 C 0 N 0 s chrPic1.JH584678 592598 115 + 1521786 TACGTATGCTTCAGGATGGATGCGAGCTGCGTGTGAATGAGA-GAATGCATGGTGGGCAGCTAATGAGTGTATCATCCTCTGCCCCAGTAGAGGGAGCCCCTGGTCCGCAGATGCC i chrPic1.JH584678 C 0 C 0 s xenTro3.GL173046 995385 115 + 1077291 CTCATATGCTTCAGGATGGCTGCGAGCTTCGTGTAAATGAGA-GGATGCATGCAGGGCAGTTAATGACTGTGTCTAGCTCTTTGCCTTTTGAAGGGGCTCCAGTTCCTCAAAATCC i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 109911 115 + 405459 TTCGGATGCTGCAGGATGGCTGTGAACTGCGAGTAAATGAAC-GCATGTATGCCGGACAGCTCATGAGCGTACCCAGCACTGCACCATTAGAGGGAGCTGCCCCTCCTCAACCTCC i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1594584 115 + 7272499 TCCGCATGCTGCAGGACGGGTGCCAGCTGCGCGTCAATGAGC-GCATGCACGGCGGAAAGATGTTGTCTGTTCCCAGCTCAGCGGCCGTAGAAGGAGCTCCGGCACCACACGTCCC i tetNig2.chr19 C 0 C 0 s fr3.chr18 3108364 115 + 8053132 TCCGGATGCTGCAGGACGGATGCCAGCTCCGCGTCAACGAGC-GCATGCACGCCGGCCAGCTCTTGTCTGTTCCCAGCTCGGCTCCTGTAGAAGGAGCTCCGGCGCCACACAGCCC i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525729 115 - 31749960 TCCGCATGCTGCAGGATGGCTGCCAGCTGCGTGTCAACGAGC-GCATGCACGGTGGCCAGCTGCTCTCGGTTCCCAGCTCGGCGCCTGTGGAAGGAGCTCCGCCTCCACACAACCC i oreNil2.chrLG17 C 0 C 0 s danRer7.chr21 25807970 115 - 44544065 TCCACATGCTGAAGGACGGCTGTCAGCTGAGGGTGAATGAGT-GCTTGCATTCAGGAGAACCGCGGAGCGTGCCTATCTCTGCCCCTATTGAAGGAGCACCAGCACCTCAGCCCCC i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=-13079.000000 s mm10.chrUn_GL456366 28499 2 + 47073 AC- s micMur1.scaffold_20543 6011 2 - 11586 AC- i micMur1.scaffold_20543 C 0 I 36 s dasNov3.JH582505 157791 2 - 2194741 AC- i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851025 2 - 304825324 AC- i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671011 2 - 3706227 GC- i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16606 2 - 223658 AC- i macEug2.GL127885 C 0 C 0 s ornAna1.Ultra173 3753032 2 - 3935469 CC- i ornAna1.Ultra173 C 0 N 0 s melGal1.chr4 30756915 1 + 74864452 -C- i melGal1.chr4 C 0 I 1 s galGal4.chr4 48935825 1 + 90216835 -C- i galGal4.chr4 C 0 I 1 s taeGut1.chr4 26469253 1 + 69780378 -C- i taeGut1.chr4 C 0 I 1 s melUnd1.JH556597 804427 1 - 11523850 -C- i melUnd1.JH556597 C 0 I 1 s chrPic1.JH584678 592713 1 + 1521786 -C- i chrPic1.JH584678 C 0 I 1 s xenTro3.GL173046 995500 2 + 1077291 AC- i xenTro3.GL173046 C 0 C 0 s latCha1.JH128645 110026 1 + 405459 -T- i latCha1.JH128645 C 0 I 1 s tetNig2.chr19 1594699 2 + 7272499 -CC i tetNig2.chr19 C 0 C 0 s fr3.chr18 3108479 2 + 8053132 -CC i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525844 2 - 31749960 -CC i oreNil2.chrLG17 C 0 C 0 s danRer7.chr21 25808085 2 - 44544065 -CA i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=4155.000000 s mm10.chrUn_GL456366 28501 12 + 47073 ATAGAAGAGAGT s dasNov3.JH582505 157793 12 - 2194741 ATTCTAGAAAAT i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851027 12 - 304825324 ATTTCCGAAATT i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671013 12 - 3706227 ATTTCCGAAATT i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16608 12 - 223658 CTTTCCGAAATT i macEug2.GL127885 C 0 C 0 s melGal1.chr4 30756917 12 + 74864452 GCTACAGAAACT i melGal1.chr4 I 1 C 0 s galGal4.chr4 48935827 2 + 90216835 GC---------- i galGal4.chr4 I 1 C 0 s taeGut1.chr4 26469255 2 + 69780378 GC---------- i taeGut1.chr4 I 1 C 0 s melUnd1.JH556597 804429 12 - 11523850 GCTACAGAAACT i melUnd1.JH556597 I 1 C 0 s chrPic1.JH584678 592715 12 + 1521786 GTTTTAGAAACT i chrPic1.JH584678 I 1 C 0 s xenTro3.GL173046 995502 12 + 1077291 AGCTGAGAAATT i xenTro3.GL173046 C 0 N 0 s latCha1.JH128645 110028 12 + 405459 GTTACAGGAACT i latCha1.JH128645 I 1 C 0 s tetNig2.chr19 1594701 12 + 7272499 ACAGCAGAGAGT i tetNig2.chr19 C 0 C 0 s fr3.chr18 3108481 12 + 8053132 GCAGCAGAGAGT i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525846 12 - 31749960 GCAGCAGGGACT i oreNil2.chrLG17 C 0 C 0 s danRer7.chr21 25808087 12 - 44544065 AAAAACGAGACT i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e micMur1.scaffold_20543 6013 36 - 11586 I e rn5.chr7 143074480 36791 + 143501887 I a score=6695.000000 s mm10.chrUn_GL456366 28513 1 + 47073 G s echTel1.scaffold_285199 56653 1 - 59798 A i echTel1.scaffold_285199 N 0 I 82 s dasNov3.JH582505 157805 1 - 2194741 A i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851039 1 - 304825324 A i monDom5.chr5 C 0 I 28 s sarHar1.chr6_GL864737_random 3671025 1 - 3706227 A i sarHar1.chr6_GL864737_random C 0 I 33 s macEug2.GL127885 16620 1 - 223658 A i macEug2.GL127885 C 0 I 30 s melGal1.chr4 30756929 1 + 74864452 A i melGal1.chr4 C 0 C 0 s melUnd1.JH556597 804441 1 - 11523850 A i melUnd1.JH556597 C 0 C 0 s chrPic1.JH584678 592727 1 + 1521786 A i chrPic1.JH584678 C 0 C 0 s latCha1.JH128645 110040 1 + 405459 A i latCha1.JH128645 C 0 I 1 s tetNig2.chr19 1594713 1 + 7272499 A i tetNig2.chr19 C 0 C 0 s fr3.chr18 3108493 1 + 8053132 A i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525858 1 - 31749960 A i oreNil2.chrLG17 C 0 C 0 s danRer7.chr21 25808099 1 - 44544065 A i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e taeGut1.chr4 26469257 0 + 69780378 C e galGal4.chr4 48935829 0 + 90216835 C e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e micMur1.scaffold_20543 6013 36 - 11586 I e rn5.chr7 143074480 36791 + 143501887 I a score=-16089.000000 s mm10.chrUn_GL456366 28514 2 + 47073 -AC s dasNov3.JH582505 157806 2 - 2194741 -AC i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851068 2 - 304825324 -CC i monDom5.chr5 I 28 C 0 s sarHar1.chr6_GL864737_random 3671059 2 - 3706227 -AC i sarHar1.chr6_GL864737_random I 33 C 0 s macEug2.GL127885 16651 2 - 223658 -AC i macEug2.GL127885 I 30 C 0 s melGal1.chr4 30756930 2 + 74864452 -AC i melGal1.chr4 C 0 N 0 s melUnd1.JH556597 804442 2 - 11523850 -GC i melUnd1.JH556597 C 0 I 2 s chrPic1.JH584678 592728 2 + 1521786 -GG i chrPic1.JH584678 C 0 I 18 s latCha1.JH128645 110042 1 + 405459 -A- i latCha1.JH128645 I 1 C 0 s tetNig2.chr19 1594714 2 + 7272499 GC- i tetNig2.chr19 C 0 C 0 s fr3.chr18 3108494 2 + 8053132 GA- i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525859 2 - 31749960 GA- i oreNil2.chrLG17 C 0 C 0 s danRer7.chr21 25808100 2 - 44544065 GA- i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e taeGut1.chr4 26469257 0 + 69780378 C e galGal4.chr4 48935829 0 + 90216835 C e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e echTel1.scaffold_285199 56654 82 - 59798 I e micMur1.scaffold_20543 6013 36 - 11586 I e rn5.chr7 143074480 36791 + 143501887 I a score=-1698.000000 s mm10.chrUn_GL456366 28516 4 + 47073 TACA s proCap1.scaffold_87782 6491 3 + 8541 -TCA i proCap1.scaffold_87782 N 0 C 0 s dasNov3.JH582505 157808 1 - 2194741 ---A i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851070 4 - 304825324 CACA i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671061 4 - 3706227 TGCA i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16653 4 - 223658 CTCA i macEug2.GL127885 C 0 C 0 s galGal4.chr4 48935829 4 + 90216835 TACA i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469257 4 + 69780378 TACA i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 804446 4 - 11523850 TACA i melUnd1.JH556597 I 2 C 0 s chrPic1.JH584678 592748 4 + 1521786 TATG i chrPic1.JH584678 I 18 C 0 s latCha1.JH128645 110043 4 + 405459 GACA i latCha1.JH128645 C 0 C 0 s tetNig2.chr19 1594716 4 + 7272499 CTCA i tetNig2.chr19 C 0 N 0 s fr3.chr18 3108496 2 + 8053132 CT-- i fr3.chr18 C 0 C 0 s oreNil2.chrLG17 15525861 4 - 31749960 AACA i oreNil2.chrLG17 C 0 N 0 s danRer7.chr21 25808102 4 - 44544065 AAGA i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e echTel1.scaffold_285199 56654 82 - 59798 I e micMur1.scaffold_20543 6013 36 - 11586 I e rn5.chr7 143074480 36791 + 143501887 I a score=440.000000 s mm10.chrUn_GL456366 28520 1 + 47073 -G s proCap1.scaffold_87782 6494 1 + 8541 -G i proCap1.scaffold_87782 C 0 C 0 s dasNov3.JH582505 157809 1 - 2194741 -G i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851074 1 - 304825324 -G i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671065 1 - 3706227 -G i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16657 1 - 223658 -G i macEug2.GL127885 C 0 C 0 s galGal4.chr4 48935833 1 + 90216835 -G i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469261 1 + 69780378 -G i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 804450 1 - 11523850 -G i melUnd1.JH556597 C 0 I 1 s chrPic1.JH584678 592752 1 + 1521786 -G i chrPic1.JH584678 C 0 C 0 s latCha1.JH128645 110047 1 + 405459 -G i latCha1.JH128645 C 0 N 0 s fr3.chr18 3108498 1 + 8053132 C- i fr3.chr18 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e danRer7.chr21 25808106 0 - 44544065 C e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e echTel1.scaffold_285199 56654 82 - 59798 I e micMur1.scaffold_20543 6013 36 - 11586 I e rn5.chr7 143074480 36791 + 143501887 I a score=-5835.000000 s mm10.chrUn_GL456366 28521 1 + 47073 -T s proCap1.scaffold_87782 6495 1 + 8541 -G i proCap1.scaffold_87782 C 0 I 59 s dasNov3.JH582505 157810 1 - 2194741 -C i dasNov3.JH582505 C 0 I 6 s monDom5.chr5 289851075 1 - 304825324 -C i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671066 1 - 3706227 -C i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16658 1 - 223658 -C i macEug2.GL127885 C 0 C 0 s galGal4.chr4 48935834 1 + 90216835 -A i galGal4.chr4 C 0 I 1 s taeGut1.chr4 26469262 1 + 69780378 -A i taeGut1.chr4 C 0 I 1 s chrPic1.JH584678 592753 1 + 1521786 -A i chrPic1.JH584678 C 0 I 1 s fr3.chr18 3108499 1 + 8053132 G- i fr3.chr18 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e danRer7.chr21 25808106 0 - 44544065 C e melUnd1.JH556597 804451 1 - 11523850 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e echTel1.scaffold_285199 56654 82 - 59798 I e micMur1.scaffold_20543 6013 36 - 11586 I e rn5.chr7 143074480 36791 + 143501887 I a score=398.000000 s mm10.chrUn_GL456366 28522 1 + 47073 T s dasNov3.JH582505 157817 1 - 2194741 T i dasNov3.JH582505 I 6 C 0 s monDom5.chr5 289851076 1 - 304825324 C i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671067 1 - 3706227 T i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16659 1 - 223658 T i macEug2.GL127885 C 0 C 0 s fr3.chr18 3108500 1 + 8053132 C i fr3.chr18 C 0 C 0 e ochPri2.scaffold_1488 226964 16513 + 247752 I e eriEur1.scaffold_342152 10878 12200 - 90678 I e taeGut1.chr4 26469263 1 + 69780378 I e danRer7.chr21 25808106 0 - 44544065 C e chrPic1.JH584678 592754 1 + 1521786 I e melUnd1.JH556597 804451 1 - 11523850 I e proCap1.scaffold_87782 6496 59 + 8541 I e galGal4.chr4 48935835 1 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e echTel1.scaffold_285199 56654 82 - 59798 I e micMur1.scaffold_20543 6013 36 - 11586 I e rn5.chr7 143074480 36791 + 143501887 I a score=-339.000000 s mm10.chrUn_GL456366 28523 1 + 47073 T s dipOrd1.scaffold_2182 108907 1 - 111093 G i dipOrd1.scaffold_2182 N 0 C 0 s ochPri2.scaffold_1488 243477 1 + 247752 T i ochPri2.scaffold_1488 I 16513 C 0 s dasNov3.JH582505 157818 1 - 2194741 T i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851077 1 - 304825324 T i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671068 1 - 3706227 T i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16660 1 - 223658 G i macEug2.GL127885 C 0 C 0 s chrPic1.JH584678 592755 1 + 1521786 C i chrPic1.JH584678 I 1 C 0 s fr3.chr18 3108501 1 + 8053132 T i fr3.chr18 C 0 C 0 e eriEur1.scaffold_342152 10878 12200 - 90678 I e taeGut1.chr4 26469263 1 + 69780378 I e danRer7.chr21 25808106 0 - 44544065 C e melUnd1.JH556597 804451 1 - 11523850 I e proCap1.scaffold_87782 6496 59 + 8541 I e galGal4.chr4 48935835 1 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e echTel1.scaffold_285199 56654 82 - 59798 I e micMur1.scaffold_20543 6013 36 - 11586 I e rn5.chr7 143074480 36791 + 143501887 I a score=3321.000000 s mm10.chrUn_GL456366 28524 1 + 47073 G s dipOrd1.scaffold_2182 108908 1 - 111093 G i dipOrd1.scaffold_2182 C 0 C 0 s ochPri2.scaffold_1488 243478 1 + 247752 G i ochPri2.scaffold_1488 C 0 C 0 s turTru2.JH472462 129973 1 - 771398 G i turTru2.JH472462 N 0 C 0 s dasNov3.JH582505 157819 1 - 2194741 G i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851078 1 - 304825324 G i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671069 1 - 3706227 G i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16661 1 - 223658 G i macEug2.GL127885 C 0 C 0 s chrPic1.JH584678 592756 1 + 1521786 A i chrPic1.JH584678 C 0 C 0 s fr3.chr18 3108502 1 + 8053132 G i fr3.chr18 C 0 C 0 e eriEur1.scaffold_342152 10878 12200 - 90678 I e taeGut1.chr4 26469263 1 + 69780378 I e danRer7.chr21 25808106 0 - 44544065 C e melUnd1.JH556597 804451 1 - 11523850 I e proCap1.scaffold_87782 6496 59 + 8541 I e galGal4.chr4 48935835 1 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e echTel1.scaffold_285199 56654 82 - 59798 I e micMur1.scaffold_20543 6013 36 - 11586 I e rn5.chr7 143074480 36791 + 143501887 I a score=-3041.000000 s mm10.chrUn_GL456366 28525 2 + 47073 AT s dipOrd1.scaffold_2182 108909 2 - 111093 AA i dipOrd1.scaffold_2182 C 0 C 0 s ochPri2.scaffold_1488 243479 2 + 247752 AC i ochPri2.scaffold_1488 C 0 C 0 s turTru2.JH472462 129974 2 - 771398 AT i turTru2.JH472462 C 0 C 0 s sorAra1.scaffold_187062 23009 1 + 26575 -T i sorAra1.scaffold_187062 N 0 I 4 s dasNov3.JH582505 157820 2 - 2194741 GT i dasNov3.JH582505 C 0 C 0 s chrPic1.JH584678 592757 1 + 1521786 A- i chrPic1.JH584678 C 0 C 0 s fr3.chr18 3108503 2 + 8053132 AC i fr3.chr18 C 0 C 0 s danRer7.chr21 25808106 1 - 44544065 -C i danRer7.chr21 C 0 C 0 e eriEur1.scaffold_342152 10878 12200 - 90678 I e taeGut1.chr4 26469263 1 + 69780378 I e melUnd1.JH556597 804451 1 - 11523850 I e proCap1.scaffold_87782 6496 59 + 8541 I e galGal4.chr4 48935835 1 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289851079 0 - 304825324 C e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e macEug2.GL127885 16662 0 - 223658 C e echTel1.scaffold_285199 56654 82 - 59798 I e sarHar1.chr6_GL864737_random 3671070 0 - 3706227 C e micMur1.scaffold_20543 6013 36 - 11586 I e rn5.chr7 143074480 36791 + 143501887 I a score=1722.000000 s mm10.chrUn_GL456366 28527 1 + 47073 C s dipOrd1.scaffold_2182 108911 1 - 111093 T i dipOrd1.scaffold_2182 C 0 I 53 s ochPri2.scaffold_1488 243481 1 + 247752 T i ochPri2.scaffold_1488 C 0 I 267 s micMur1.scaffold_20543 6049 1 - 11586 C i micMur1.scaffold_20543 I 36 C 0 s turTru2.JH472462 129976 1 - 771398 C i turTru2.JH472462 C 0 I 55 s eriEur1.scaffold_342152 23078 1 - 90678 C i eriEur1.scaffold_342152 I 12200 C 0 s sorAra1.scaffold_187062 23014 1 + 26575 C i sorAra1.scaffold_187062 I 4 C 0 s dasNov3.JH582505 157822 1 - 2194741 C i dasNov3.JH582505 C 0 I 23 s fr3.chr18 3108505 1 + 8053132 C i fr3.chr18 C 0 C 0 s danRer7.chr21 25808107 1 - 44544065 T i danRer7.chr21 C 0 C 0 e taeGut1.chr4 26469263 1 + 69780378 I e chrPic1.JH584678 592758 0 + 1521786 C e melUnd1.JH556597 804451 1 - 11523850 I e proCap1.scaffold_87782 6496 59 + 8541 I e galGal4.chr4 48935835 1 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e monDom5.chr5 289851079 0 - 304825324 C e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e macEug2.GL127885 16662 0 - 223658 C e echTel1.scaffold_285199 56654 82 - 59798 I e sarHar1.chr6_GL864737_random 3671070 0 - 3706227 C e rn5.chr7 143074480 36791 + 143501887 I a score=-9027.000000 s mm10.chrUn_GL456366 28528 4 + 47073 AGTT- s micMur1.scaffold_20543 6050 4 - 11586 AGTT- i micMur1.scaffold_20543 C 0 C 0 s eriEur1.scaffold_342152 23079 3 - 90678 -ATT- i eriEur1.scaffold_342152 C 0 I 246 s sorAra1.scaffold_187062 23015 3 + 26575 -ATA- i sorAra1.scaffold_187062 C 0 I 357 s dasNov3.JH582505 157846 4 - 2194741 AGTT- i dasNov3.JH582505 I 23 C 0 s monDom5.chr5 289851079 4 - 304825324 GGTT- i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671070 4 - 3706227 GGTT- i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16662 4 - 223658 ACTT- i macEug2.GL127885 C 0 C 0 s chrPic1.JH584678 592758 1 + 1521786 --T-- i chrPic1.JH584678 C 0 C 0 s fr3.chr18 3108506 4 + 8053132 -CTCG i fr3.chr18 C 0 C 0 s danRer7.chr21 25808108 4 - 44544065 -CTTT i danRer7.chr21 C 0 C 0 e turTru2.JH472462 129977 55 - 771398 I e dipOrd1.scaffold_2182 108912 53 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e taeGut1.chr4 26469263 1 + 69780378 I e melUnd1.JH556597 804451 1 - 11523850 I e proCap1.scaffold_87782 6496 59 + 8541 I e galGal4.chr4 48935835 1 + 90216835 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e echTel1.scaffold_285199 56654 82 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-29812.000000 s mm10.chrUn_GL456366 28532 19 + 47073 GCTACAA---AAGTAGCAGGCG----------------------- s micMur1.scaffold_20543 6054 19 - 11586 GCTACAAA-GAGGTAGTAG--A----------------------- i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157850 22 - 2194741 GTTACTAAGGAGGTAGCAGATG----------------------- i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851083 21 - 304825324 GCTACCAA-AAGTTAACAGATG----------------------- i monDom5.chr5 C 0 I 3 s sarHar1.chr6_GL864737_random 3671074 21 - 3706227 GCTACCAA-AAGTTAACAGATG----------------------- i sarHar1.chr6_GL864737_random C 0 I 3 s macEug2.GL127885 16666 21 - 223658 GCCACCAG-AAGTTAGCAGATG----------------------- i macEug2.GL127885 C 0 I 3 s galGal4.chr4 48935836 11 + 90216835 -----------ACTAACAGCTC----------------------- i galGal4.chr4 I 1 I 3 s taeGut1.chr4 26469264 11 + 69780378 -----------ACTAGCAGCTC----------------------- i taeGut1.chr4 I 1 I 2 s chrPic1.JH584678 592759 11 + 1521786 -----------ATTGAAGACTT----------------------- i chrPic1.JH584678 C 0 I 8 s fr3.chr18 3108510 31 + 8053132 GACAGGAACTCTGCACCACGCACG--------------TGTGGGA i fr3.chr18 C 0 C 0 s danRer7.chr21 25808112 45 - 44544065 GCCAAAAAAATAACAACAAATATGAAAACCTGCCATGTTGTGGAA i danRer7.chr21 C 0 C 0 e turTru2.JH472462 129977 55 - 771398 I e dipOrd1.scaffold_2182 108912 53 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e melUnd1.JH556597 804451 1 - 11523850 I e proCap1.scaffold_87782 6496 59 + 8541 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=2760.000000 s mm10.chrUn_GL456366 28551 1 + 47073 A s micMur1.scaffold_20543 6073 1 - 11586 A i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157872 1 - 2194741 G i dasNov3.JH582505 C 0 C 0 s choHof1.scaffold_62212 1073 1 - 9315 A i choHof1.scaffold_62212 N 0 I 7 s monDom5.chr5 289851107 1 - 304825324 A i monDom5.chr5 I 3 C 0 s sarHar1.chr6_GL864737_random 3671098 1 - 3706227 A i sarHar1.chr6_GL864737_random I 3 C 0 s macEug2.GL127885 16690 1 - 223658 A i macEug2.GL127885 I 3 C 0 s galGal4.chr4 48935850 1 + 90216835 G i galGal4.chr4 I 3 C 0 s taeGut1.chr4 26469277 1 + 69780378 G i taeGut1.chr4 I 2 C 0 s melUnd1.JH556597 804452 1 - 11523850 G i melUnd1.JH556597 I 1 C 0 s chrPic1.JH584678 592778 1 + 1521786 A i chrPic1.JH584678 I 8 C 0 s fr3.chr18 3108541 1 + 8053132 A i fr3.chr18 C 0 C 0 s danRer7.chr21 25808157 1 - 44544065 A i danRer7.chr21 C 0 C 0 e turTru2.JH472462 129977 55 - 771398 I e dipOrd1.scaffold_2182 108912 53 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e proCap1.scaffold_87782 6496 59 + 8541 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=778.000000 s mm10.chrUn_GL456366 28552 1 + 47073 A s micMur1.scaffold_20543 6074 1 - 11586 T i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157873 1 - 2194741 A i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851108 1 - 304825324 A i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671099 1 - 3706227 A i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16691 1 - 223658 G i macEug2.GL127885 C 0 C 0 s galGal4.chr4 48935851 1 + 90216835 G i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469278 1 + 69780378 G i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 804453 1 - 11523850 A i melUnd1.JH556597 C 0 C 0 s chrPic1.JH584678 592779 1 + 1521786 A i chrPic1.JH584678 C 0 C 0 s fr3.chr18 3108542 1 + 8053132 A i fr3.chr18 C 0 C 0 s danRer7.chr21 25808158 1 - 44544065 A i danRer7.chr21 C 0 C 0 e turTru2.JH472462 129977 55 - 771398 I e dipOrd1.scaffold_2182 108912 53 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1074 7 - 9315 I e proCap1.scaffold_87782 6496 59 + 8541 I e myoLuc2.GL429793 1276989 13735 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-8305.000000 s mm10.chrUn_GL456366 28553 1 + 47073 -T s micMur1.scaffold_20543 6075 1 - 11586 -T i micMur1.scaffold_20543 C 0 C 0 s myoLuc2.GL429793 1290724 1 + 10587614 -T i myoLuc2.GL429793 I 13735 C 0 s dasNov3.JH582505 157874 1 - 2194741 -T i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851109 1 - 304825324 -T i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671100 1 - 3706227 -T i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16692 1 - 223658 -G i macEug2.GL127885 C 0 C 0 s galGal4.chr4 48935852 1 + 90216835 -T i galGal4.chr4 C 0 I 10 s taeGut1.chr4 26469279 1 + 69780378 -C i taeGut1.chr4 C 0 I 10 s melUnd1.JH556597 804454 1 - 11523850 -T i melUnd1.JH556597 C 0 I 10 s chrPic1.JH584678 592780 1 + 1521786 -T i chrPic1.JH584678 C 0 I 20 s fr3.chr18 3108543 1 + 8053132 G- i fr3.chr18 C 0 C 0 s danRer7.chr21 25808159 1 - 44544065 A- i danRer7.chr21 C 0 C 0 e turTru2.JH472462 129977 55 - 771398 I e dipOrd1.scaffold_2182 108912 53 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1074 7 - 9315 I e proCap1.scaffold_87782 6496 59 + 8541 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-29787.000000 s mm10.chrUn_GL456366 28554 4 + 47073 -GAAT s dipOrd1.scaffold_2182 108965 4 - 111093 -GGCC i dipOrd1.scaffold_2182 I 53 C 0 s micMur1.scaffold_20543 6076 4 - 11586 -GAAT i micMur1.scaffold_20543 C 0 C 0 s myoLuc2.GL429793 1290725 3 + 10587614 --ACT i myoLuc2.GL429793 C 0 I 2 s dasNov3.JH582505 157875 3 - 2194741 --ACT i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851110 4 - 304825324 -CATT i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671101 4 - 3706227 -CACT i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16693 4 - 223658 -CATT i macEug2.GL127885 C 0 C 0 s galGal4.chr4 48935863 3 + 90216835 -GAA- i galGal4.chr4 I 10 C 0 s taeGut1.chr4 26469290 3 + 69780378 -GAG- i taeGut1.chr4 I 10 C 0 s melUnd1.JH556597 804465 3 - 11523850 -GAA- i melUnd1.JH556597 I 10 C 0 s chrPic1.JH584678 592801 3 + 1521786 -TGG- i chrPic1.JH584678 I 20 C 0 s fr3.chr18 3108544 4 + 8053132 GAAG- i fr3.chr18 C 0 C 0 s danRer7.chr21 25808160 4 - 44544065 TGAT- i danRer7.chr21 C 0 C 0 e turTru2.JH472462 129977 55 - 771398 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1074 7 - 9315 I e proCap1.scaffold_87782 6496 59 + 8541 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=3030.000000 s mm10.chrUn_GL456366 28558 1 + 47073 C s dipOrd1.scaffold_2182 108969 1 - 111093 C i dipOrd1.scaffold_2182 C 0 C 0 s myoLuc2.GL429793 1290730 1 + 10587614 T i myoLuc2.GL429793 I 2 I 346 s dasNov3.JH582505 157878 1 - 2194741 C i dasNov3.JH582505 C 0 I 2 s monDom5.chr5 289851114 1 - 304825324 T i monDom5.chr5 C 0 I 3 s sarHar1.chr6_GL864737_random 3671105 1 - 3706227 T i sarHar1.chr6_GL864737_random C 0 I 2 s macEug2.GL127885 16697 1 - 223658 T i macEug2.GL127885 C 0 I 2 s galGal4.chr4 48935866 1 + 90216835 C i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469293 1 + 69780378 C i taeGut1.chr4 C 0 C 0 s melUnd1.JH556597 804468 1 - 11523850 C i melUnd1.JH556597 C 0 C 0 s chrPic1.JH584678 592804 1 + 1521786 C i chrPic1.JH584678 C 0 C 0 s fr3.chr18 3108548 1 + 8053132 C i fr3.chr18 C 0 C 0 s danRer7.chr21 25808164 1 - 44544065 C i danRer7.chr21 C 0 C 0 e turTru2.JH472462 129977 55 - 771398 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1074 7 - 9315 I e proCap1.scaffold_87782 6496 59 + 8541 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e micMur1.scaffold_20543 6080 0 - 11586 C e rn5.chr7 143074480 36791 + 143501887 I a score=-770.000000 s mm10.chrUn_GL456366 28559 2 + 47073 TG s dipOrd1.scaffold_2182 108970 2 - 111093 TG i dipOrd1.scaffold_2182 C 0 C 0 s papHam1.scaffold4639 95180 2 - 132367 TA i papHam1.scaffold4639 N 0 C 0 s micMur1.scaffold_20543 6080 2 - 11586 TA i micMur1.scaffold_20543 C 0 C 0 s turTru2.JH472462 130032 1 - 771398 -A i turTru2.JH472462 I 55 I 3 s felCat5.chrB1 24890076 1 + 205241052 -A i felCat5.chrB1 N 0 I 3 s proCap1.scaffold_87782 6555 2 + 8541 AG i proCap1.scaffold_87782 I 59 C 0 s dasNov3.JH582505 157881 2 - 2194741 TG i dasNov3.JH582505 I 2 C 0 s choHof1.scaffold_62212 1081 2 - 9315 AG i choHof1.scaffold_62212 I 7 C 0 s monDom5.chr5 289851118 2 - 304825324 TG i monDom5.chr5 I 3 C 0 s sarHar1.chr6_GL864737_random 3671108 2 - 3706227 TG i sarHar1.chr6_GL864737_random I 2 C 0 s macEug2.GL127885 16700 2 - 223658 TG i macEug2.GL127885 I 2 C 0 s galGal4.chr4 48935867 2 + 90216835 CC i galGal4.chr4 C 0 I 2 s taeGut1.chr4 26469294 2 + 69780378 TG i taeGut1.chr4 C 0 I 2 s melUnd1.JH556597 804469 2 - 11523850 TG i melUnd1.JH556597 C 0 I 2 s chrPic1.JH584678 592805 2 + 1521786 CA i chrPic1.JH584678 C 0 I 2 s fr3.chr18 3108549 2 + 8053132 AC i fr3.chr18 C 0 C 0 s danRer7.chr21 25808165 2 - 44544065 TA i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-7562.000000 s mm10.chrUn_GL456366 28561 1 + 47073 -A s dipOrd1.scaffold_2182 108972 1 - 111093 -A i dipOrd1.scaffold_2182 C 0 I 188 s proCap1.scaffold_87782 6557 1 + 8541 -C i proCap1.scaffold_87782 C 0 I 1 s dasNov3.JH582505 157883 1 - 2194741 -A i dasNov3.JH582505 C 0 I 1 s choHof1.scaffold_62212 1083 1 - 9315 -T i choHof1.scaffold_62212 C 0 I 1 s monDom5.chr5 289851120 1 - 304825324 -A i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671110 1 - 3706227 -A i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16702 1 - 223658 -A i macEug2.GL127885 C 0 C 0 s fr3.chr18 3108551 1 + 8053132 T- i fr3.chr18 C 0 C 0 s danRer7.chr21 25808167 1 - 44544065 G- i danRer7.chr21 C 0 C 0 e felCat5.chrB1 24890077 3 + 205241052 I e papHam1.scaffold4639 95182 0 - 132367 C e turTru2.JH472462 130033 3 - 771398 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e taeGut1.chr4 26469296 2 + 69780378 I e chrPic1.JH584678 592807 2 + 1521786 I e melUnd1.JH556597 804471 2 - 11523850 I e galGal4.chr4 48935869 2 + 90216835 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e micMur1.scaffold_20543 6082 0 - 11586 C e rn5.chr7 143074480 36791 + 143501887 I a score=-212.000000 s mm10.chrUn_GL456366 28562 1 + 47073 G s papHam1.scaffold4639 95182 1 - 132367 G i papHam1.scaffold4639 C 0 C 0 s micMur1.scaffold_20543 6082 1 - 11586 G i micMur1.scaffold_20543 C 0 C 0 s felCat5.chrB1 24890080 1 + 205241052 A i felCat5.chrB1 I 3 I 2 s monDom5.chr5 289851121 1 - 304825324 A i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671111 1 - 3706227 A i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16703 1 - 223658 A i macEug2.GL127885 C 0 C 0 s fr3.chr18 3108552 1 + 8053132 T i fr3.chr18 C 0 C 0 s danRer7.chr21 25808168 1 - 44544065 A i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130033 3 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1084 1 - 9315 I e taeGut1.chr4 26469296 2 + 69780378 I e chrPic1.JH584678 592807 2 + 1521786 I e melUnd1.JH556597 804471 2 - 11523850 I e proCap1.scaffold_87782 6558 1 + 8541 I e galGal4.chr4 48935869 2 + 90216835 I e dasNov3.JH582505 157884 1 - 2194741 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=4819.000000 s mm10.chrUn_GL456366 28563 1 + 47073 C s papHam1.scaffold4639 95183 1 - 132367 T i papHam1.scaffold4639 C 0 N 0 s micMur1.scaffold_20543 6083 1 - 11586 T i micMur1.scaffold_20543 C 0 I 2 s turTru2.JH472462 130036 1 - 771398 C i turTru2.JH472462 I 3 C 0 s felCat5.chrB1 24890083 1 + 205241052 C i felCat5.chrB1 I 2 N 0 s proCap1.scaffold_87782 6559 1 + 8541 C i proCap1.scaffold_87782 I 1 C 0 s dasNov3.JH582505 157885 1 - 2194741 C i dasNov3.JH582505 I 1 C 0 s choHof1.scaffold_62212 1085 1 - 9315 C i choHof1.scaffold_62212 I 1 C 0 s monDom5.chr5 289851122 1 - 304825324 C i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671112 1 - 3706227 C i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16704 1 - 223658 C i macEug2.GL127885 C 0 C 0 s galGal4.chr4 48935871 1 + 90216835 T i galGal4.chr4 I 2 C 0 s taeGut1.chr4 26469298 1 + 69780378 C i taeGut1.chr4 I 2 C 0 s melUnd1.JH556597 804473 1 - 11523850 C i melUnd1.JH556597 I 2 C 0 s chrPic1.JH584678 592809 1 + 1521786 T i chrPic1.JH584678 I 2 C 0 s fr3.chr18 3108553 1 + 8053132 T i fr3.chr18 C 0 C 0 s danRer7.chr21 25808169 1 - 44544065 T i danRer7.chr21 C 0 C 0 e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=3744.000000 s mm10.chrUn_GL456366 28564 1 + 47073 T s micMur1.scaffold_20543 6086 1 - 11586 T i micMur1.scaffold_20543 I 2 I 2 s turTru2.JH472462 130037 1 - 771398 T i turTru2.JH472462 C 0 I 210 s proCap1.scaffold_87782 6560 1 + 8541 T i proCap1.scaffold_87782 C 0 N 0 s dasNov3.JH582505 157886 1 - 2194741 T i dasNov3.JH582505 C 0 I 8 s choHof1.scaffold_62212 1086 1 - 9315 T i choHof1.scaffold_62212 C 0 I 205 s monDom5.chr5 289851123 1 - 304825324 T i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671113 1 - 3706227 T i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16705 1 - 223658 T i macEug2.GL127885 C 0 C 0 s galGal4.chr4 48935872 1 + 90216835 G i galGal4.chr4 C 0 I 1 s taeGut1.chr4 26469299 1 + 69780378 T i taeGut1.chr4 C 0 I 1 s melUnd1.JH556597 804474 1 - 11523850 C i melUnd1.JH556597 C 0 I 1 s chrPic1.JH584678 592810 1 + 1521786 C i chrPic1.JH584678 C 0 I 1 s fr3.chr18 3108554 1 + 8053132 T i fr3.chr18 C 0 C 0 s danRer7.chr21 25808170 1 - 44544065 T i danRer7.chr21 C 0 C 0 e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-9076.000000 s mm10.chrUn_GL456366 28565 2 + 47073 AA s micMur1.scaffold_20543 6089 2 - 11586 AG i micMur1.scaffold_20543 I 2 C 0 s dasNov3.JH582505 157895 2 - 2194741 AG i dasNov3.JH582505 I 8 C 0 s monDom5.chr5 289851124 2 - 304825324 AA i monDom5.chr5 C 0 I 8 s sarHar1.chr6_GL864737_random 3671114 2 - 3706227 AA i sarHar1.chr6_GL864737_random C 0 I 8 s macEug2.GL127885 16706 2 - 223658 AA i macEug2.GL127885 C 0 I 8 s galGal4.chr4 48935874 1 + 90216835 A- i galGal4.chr4 I 1 I 2 s taeGut1.chr4 26469301 1 + 69780378 A- i taeGut1.chr4 I 1 I 2 s melUnd1.JH556597 804476 1 - 11523850 A- i melUnd1.JH556597 I 1 I 2 s chrPic1.JH584678 592812 1 + 1521786 A- i chrPic1.JH584678 I 1 I 2 s fr3.chr18 3108555 1 + 8053132 A- i fr3.chr18 C 0 C 0 s danRer7.chr21 25808171 1 - 44544065 A- i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130038 210 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1087 205 - 9315 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56654 82 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-8337.000000 s mm10.chrUn_GL456366 28567 9 + 47073 TGCAACCTT s micMur1.scaffold_20543 6091 9 - 11586 TGCAAATTT i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_285199 56736 8 - 59798 TGCAATTC- i echTel1.scaffold_285199 I 82 I 190 s dasNov3.JH582505 157897 9 - 2194741 TGCAAAATT i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851134 9 - 304825324 TGCAAAAGT i monDom5.chr5 I 8 C 0 s sarHar1.chr6_GL864737_random 3671124 9 - 3706227 TGCAAAATT i sarHar1.chr6_GL864737_random I 8 C 0 s macEug2.GL127885 16716 9 - 223658 TGCAAAATT i macEug2.GL127885 I 8 C 0 s galGal4.chr4 48935877 7 + 90216835 TACCCAC-- i galGal4.chr4 I 2 C 0 s taeGut1.chr4 26469304 7 + 69780378 CACCCGC-- i taeGut1.chr4 I 2 C 0 s melUnd1.JH556597 804479 7 - 11523850 TACCCAT-- i melUnd1.JH556597 I 2 C 0 s chrPic1.JH584678 592815 7 + 1521786 AACCAGT-- i chrPic1.JH584678 I 2 C 0 e turTru2.JH472462 130038 210 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1087 205 - 9315 I e fr3.chr18 3108556 0 + 8053132 C e danRer7.chr21 25808172 0 - 44544065 C e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=-7418.000000 s mm10.chrUn_GL456366 28576 32 + 47073 CAAGCACCTTAAACATTT-AAGAACTTATTACA s micMur1.scaffold_20543 6100 32 - 11586 TAAGCACCTTAAACATGT-AAGATCTTATTACA i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157906 32 - 2194741 TAAGCACCTTAAACATTT-CAAGTCTTATTGCC i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851143 33 - 304825324 CAAGCACCTTAGACATTTTAAAGTTTTATTACA i monDom5.chr5 C 0 C 0 s sarHar1.chr6_GL864737_random 3671133 33 - 3706227 CAAGCACCTTAGatgtttaaaagttttattaca i sarHar1.chr6_GL864737_random C 0 C 0 s macEug2.GL127885 16725 33 - 223658 CAAGCACCTTAGACATGGAAAAGTTTTGCTACA i macEug2.GL127885 C 0 C 0 s galGal4.chr4 48935884 21 + 90216835 TACAAACTGTGA--------ACAGCTTAT---- i galGal4.chr4 C 0 C 0 s taeGut1.chr4 26469311 23 + 69780378 TAAAGACTCC----------AGAGCTTATTAAA i taeGut1.chr4 C 0 N 0 s melUnd1.JH556597 804486 26 - 11523850 GAAGGACTGCTA-------CAAAGCTTACTGAA i melUnd1.JH556597 C 0 I 26 s chrPic1.JH584678 592822 31 + 1521786 TCTGCAATGCAAA-ATCT-AAAAGCACCTTAAA i chrPic1.JH584678 C 0 I 11 s fr3.chr18 3108556 31 + 8053132 CAGCTGCCGTTAAAGCtg--gagttttattttc i fr3.chr18 C 0 C 0 s danRer7.chr21 25808172 20 - 44544065 --------ATAAATATTG--AAA---TATTTGC i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130038 210 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1087 205 - 9315 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56744 190 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-106512.000000 s mm10.chrUn_GL456366 28608 40 + 47073 AT----------------------------------------------------------TACAGATAGATGGGTATGTA-----------TG------------CAGACAT---------TTTGTGG-GA s micMur1.scaffold_20543 6132 48 - 11586 GT------------------------------------------------AATTGATAGATACAGGTATATATGTATGTG-----------AG------------CAG--AT---------TGTGTGG-GA i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 157938 109 - 2194741 GTTAGACACATAGACAAatatatatatatatacacacacacacacacatatatctatatatatagagagatatgtatgtg-----------tgtatgtatGTGAACAG--AT---------ATTGCGGCGA i dasNov3.JH582505 C 0 C 0 s monDom5.chr5 289851176 32 - 304825324 G----------------------------------------------------------------ATATATATGCATATA-----------TG------------TGT--AT---------TTTGTTG-AA i monDom5.chr5 C 0 N 0 s sarHar1.chr6_GL864737_random 3671166 32 - 3706227 g----------------------------------------------------------------atatatatgcatata-----------tg------------tgt--at---------tttgttg-aa i sarHar1.chr6_GL864737_random C 0 N 0 s macEug2.GL127885 16758 68 - 223658 GATATATAGTGTG-------------------------------------TATTTTGTTGAACAAATATATAtgtatgtg-----------tg------------tgt--gtgtgtgtacgtgtgtTG-AA i macEug2.GL127885 C 0 I 16 s galGal4.chr4 48935905 29 + 90216835 ------------------------------------------------------------------CCAATGGCCACCTC-----------TG------------CAA--AC---------C-TGTCT-GC i galGal4.chr4 C 0 I 1 s melUnd1.JH556597 804538 38 - 11523850 ---------------------------------------------------------GTGCAGAATCCAGAAG-CACCTT-----------AA------------CAG--At---------catttct-gt i melUnd1.JH556597 I 26 I 4 s chrPic1.JH584678 592864 33 + 1521786 -----------------------------------------------------------GTTAAAATAAATGG----GGG-----------AG------------CAT--AT---------GAACTCT-GT i chrPic1.JH584678 I 11 I 2 s fr3.chr18 3108587 27 + 8053132 ----------------------------------------------------------attcacgCTAGATTCGGACCTC-----------CG------------TGG----------------------- i fr3.chr18 C 0 C 0 s danRer7.chr21 25808192 33 - 44544065 ---------------------------------------------------------------TGAGAGAATTGTACATCATAACAGATGATG------------AAG----------------------- i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130038 210 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1087 205 - 9315 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56744 190 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-47312.000000 s mm10.chrUn_GL456366 28648 51 + 47073 GGACACACCAA---ATTCTTTGTCACCAGC--ACTTTTGCTATGAGCAGTATTTGT----------- s micMur1.scaffold_20543 6180 51 - 11586 GGACATATTGA---ATTCTTTGTCACCAGC--GCTTTTGATATGAGCAGTATGTGT----------- i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 158047 35 - 2194741 GGGCATAATGA---ATTCTTTGTAACCAGC--ACTTTTGA--------------------------- i dasNov3.JH582505 C 0 C 0 s macEug2.GL127885 16842 47 - 223658 GGGT---TTGA---ATTCAATGCCACCAGC--ACTTTTCGTTCTTGAAGTAT-TGT----------- i macEug2.GL127885 I 16 C 0 s galGal4.chr4 48935935 38 + 90216835 ----GTGCAGA---ATCTGA------AAGC--ACCTTAACC---AACGGTCTCTGC----------- i galGal4.chr4 I 1 C 0 s melUnd1.JH556597 804580 40 - 11523850 ----ataaagA---GTGTGG------AAGC--TCTTTGCTC-TTTGCAGCCTGtgt----------- i melUnd1.JH556597 I 4 C 0 s chrPic1.JH584678 592899 44 + 1521786 ----ATTAAAACTTGTGCTA------CAGC--ACTTTTCATGCTGATAATATTTTT----------- i chrPic1.JH584678 I 2 N 0 s fr3.chr18 3108614 42 + 8053132 ---------------TTTCG-------AGC--ACGGACATCATTTCTTGT-TTTAGAACGAGTACTC i fr3.chr18 C 0 C 0 s danRer7.chr21 25808225 48 - 44544065 ---------------CTTCACCATTACAGCAAATTGGTTTCATGTACTGTATTTGGAACTTG----C i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130038 210 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1087 205 - 9315 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56744 190 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-2611.000000 s mm10.chrUn_GL456366 28699 6 + 47073 TACACA s micMur1.scaffold_20543 6231 4 - 11586 T--ACA i micMur1.scaffold_20543 C 0 C 0 s macEug2.GL127885 16889 6 - 223658 TAAACA i macEug2.GL127885 C 0 N 0 s galGal4.chr4 48935973 4 + 90216835 --TGAA i galGal4.chr4 C 0 I 3 s melUnd1.JH556597 804620 4 - 11523850 --taca i melUnd1.JH556597 C 0 I 3 s fr3.chr18 3108656 6 + 8053132 TCTTGA i fr3.chr18 C 0 C 0 s danRer7.chr21 25808273 6 - 44544065 TCCTGA i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130038 210 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1087 205 - 9315 I e dasNov3.JH582505 158082 0 - 2194741 C e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56744 190 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-33781.000000 s mm10.chrUn_GL456366 28705 51 + 47073 CAGTAACC--------------AGTCCCTGCTC--AGA-ACTAAATT-----TTATAATGT-----------------------AAGG----TGTCCAAG s micMur1.scaffold_20543 6235 50 - 11586 CAGTAA-C--------------AGTTCCTGCTT--AGA-ACTGAATT-----TTATAGTTT-----------------------AAGG----TGTCCAAG i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 158082 47 - 2194741 ---TAA-T--------------AGTTCCTGCTT--AAA-ACTGAATT-----TTATAATTT-----------------------AAGG----TGTCCAGA i dasNov3.JH582505 C 0 C 0 s galGal4.chr4 48935980 56 + 90216835 -------TAGAGGAGCGTGAAAGCTTCTTGCTCTTTGA-ACTTTgtt-----ttacatctt-------------------------------tcttttgA i galGal4.chr4 I 3 C 0 s melUnd1.JH556597 804627 66 - 11523850 -------t--------------ttttttttccttatgatattttgctgttgcttgcAACTTACCCA-------------GCAGTAAGGTTGATATGTGGG i melUnd1.JH556597 I 3 C 0 s fr3.chr18 3108662 69 + 8053132 CACTGA-C--------------CACCCCTTATT--GAG-CTGCTAAT--------CAGCCTTTTGAATGCCTTTCAGTTGTATCAtaa----tgtgtga- i fr3.chr18 C 0 C 0 s danRer7.chr21 25808279 52 - 44544065 GA--AA-C--------------ATACACTGCAG--GAA-GTGTTTAT-----TTCCAGCCTGATGG------------------GTAA----TTAGTAA- i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130038 210 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1087 205 - 9315 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56744 190 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-1516.000000 s mm10.chrUn_GL456366 28756 2 + 47073 AT- s tarSyr1.scaffold_49443 4287 2 - 14044 AT- i tarSyr1.scaffold_49443 N 0 N 0 s micMur1.scaffold_20543 6285 2 - 11586 AT- i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 158129 2 - 2194741 AT- i dasNov3.JH582505 C 0 C 0 s galGal4.chr4 48936036 2 + 90216835 AT- i galGal4.chr4 C 0 I 1 s melUnd1.JH556597 804693 2 - 11523850 AT- i melUnd1.JH556597 C 0 I 1 s fr3.chr18 3108731 2 + 8053132 -tt i fr3.chr18 C 0 C 0 s danRer7.chr21 25808331 2 - 44544065 -TT i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130038 210 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1087 205 - 9315 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56744 190 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=-258.000000 s mm10.chrUn_GL456366 28758 1 + 47073 G s micMur1.scaffold_20543 6287 1 - 11586 G i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 158131 1 - 2194741 A i dasNov3.JH582505 C 0 C 0 s fr3.chr18 3108733 1 + 8053132 t i fr3.chr18 C 0 C 0 s danRer7.chr21 25808333 1 - 44544065 G i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130038 210 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1087 205 - 9315 I e melUnd1.JH556597 804695 1 - 11523850 I e galGal4.chr4 48936038 1 + 90216835 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e echTel1.scaffold_285199 56744 190 - 59798 I e rn5.chr7 143074480 36791 + 143501887 I a score=2548.000000 s mm10.chrUn_GL456366 28759 1 + 47073 T s micMur1.scaffold_20543 6288 1 - 11586 T i micMur1.scaffold_20543 C 0 C 0 s echTel1.scaffold_285199 56934 1 - 59798 T i echTel1.scaffold_285199 I 190 N 0 s dasNov3.JH582505 158132 1 - 2194741 T i dasNov3.JH582505 C 0 C 0 s galGal4.chr4 48936039 1 + 90216835 T i galGal4.chr4 I 1 C 0 s melUnd1.JH556597 804696 1 - 11523850 T i melUnd1.JH556597 I 1 C 0 s fr3.chr18 3108734 1 + 8053132 t i fr3.chr18 C 0 C 0 s danRer7.chr21 25808334 1 - 44544065 T i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130038 210 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1087 205 - 9315 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=-4033.000000 s mm10.chrUn_GL456366 28760 1 + 47073 -G s micMur1.scaffold_20543 6289 1 - 11586 -G i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 158133 1 - 2194741 -G i dasNov3.JH582505 C 0 C 0 s galGal4.chr4 48936040 1 + 90216835 -G i galGal4.chr4 C 0 C 0 s melUnd1.JH556597 804697 1 - 11523850 -A i melUnd1.JH556597 C 0 C 0 s fr3.chr18 3108735 1 + 8053132 t- i fr3.chr18 C 0 C 0 s danRer7.chr21 25808335 1 - 44544065 T- i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130038 210 - 771398 I e dipOrd1.scaffold_2182 108973 188 - 111093 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23082 246 - 90678 I e choHof1.scaffold_62212 1087 205 - 9315 I e myoLuc2.GL429793 1290731 346 + 10587614 I e tupBel1.scaffold_4168.1-100339 83499 14749 - 100339 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=795.000000 s mm10.chrUn_GL456366 28761 1 + 47073 T s dipOrd1.scaffold_2182 109161 1 - 111093 C i dipOrd1.scaffold_2182 I 188 N 0 s micMur1.scaffold_20543 6290 1 - 11586 T i micMur1.scaffold_20543 C 0 C 0 s tupBel1.scaffold_4168.1-100339 98248 1 - 100339 T i tupBel1.scaffold_4168.1-100339 I 14749 N 0 s turTru2.JH472462 130248 1 - 771398 T i turTru2.JH472462 I 210 I 96 s eriEur1.scaffold_342152 23328 1 - 90678 T i eriEur1.scaffold_342152 I 246 I 134 s dasNov3.JH582505 158134 1 - 2194741 T i dasNov3.JH582505 C 0 C 0 s choHof1.scaffold_62212 1292 1 - 9315 T i choHof1.scaffold_62212 I 205 I 23 s galGal4.chr4 48936041 1 + 90216835 T i galGal4.chr4 C 0 I 2 s melUnd1.JH556597 804698 1 - 11523850 G i melUnd1.JH556597 C 0 I 4 s fr3.chr18 3108736 1 + 8053132 t i fr3.chr18 C 0 C 0 s danRer7.chr21 25808336 1 - 44544065 G i danRer7.chr21 C 0 C 0 e ochPri2.scaffold_1488 243482 267 + 247752 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=4380.000000 s mm10.chrUn_GL456366 28762 16 + 47073 TCC-TTTGCTTTTAAGA s micMur1.scaffold_20543 6291 17 - 11586 TCCTTTTGGTTTTAAAA i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 158135 17 - 2194741 TCTTTTTGGTTTTAAAA i dasNov3.JH582505 C 0 C 0 s melUnd1.JH556597 804703 17 - 11523850 TGTGTTAAGCTTTAAAG i melUnd1.JH556597 I 4 N 0 s fr3.chr18 3108737 16 + 8053132 -tttttttctgttaagA i fr3.chr18 C 0 C 0 s danRer7.chr21 25808337 12 - 44544065 -TATTTT----TTAAAA i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130249 96 - 771398 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23329 134 - 90678 I e choHof1.scaffold_62212 1293 23 - 9315 I e galGal4.chr4 48936042 2 + 90216835 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=1740.000000 s mm10.chrUn_GL456366 28778 2 + 47073 TG s micMur1.scaffold_20543 6308 2 - 11586 TG i micMur1.scaffold_20543 C 0 I 1 s dasNov3.JH582505 158152 2 - 2194741 TG i dasNov3.JH582505 C 0 I 1 s galGal4.chr4 48936044 2 + 90216835 TG i galGal4.chr4 I 2 C 0 s fr3.chr18 3108753 2 + 8053132 TG i fr3.chr18 C 0 C 0 s danRer7.chr21 25808349 2 - 44544065 TC i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130249 96 - 771398 I e ochPri2.scaffold_1488 243482 267 + 247752 I e eriEur1.scaffold_342152 23329 134 - 90678 I e choHof1.scaffold_62212 1293 23 - 9315 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=-5831.000000 s mm10.chrUn_GL456366 28780 3 + 47073 GAA-- s ochPri2.scaffold_1488 243749 3 + 247752 TGC-- i ochPri2.scaffold_1488 I 267 C 0 s micMur1.scaffold_20543 6311 3 - 11586 AAA-- i micMur1.scaffold_20543 I 1 C 0 s dasNov3.JH582505 158155 3 - 2194741 CAA-- i dasNov3.JH582505 I 1 C 0 s galGal4.chr4 48936046 1 + 90216835 --A-- i galGal4.chr4 C 0 I 2 s fr3.chr18 3108755 3 + 8053132 --ACA i fr3.chr18 C 0 C 0 s danRer7.chr21 25808351 3 - 44544065 --CCT i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130249 96 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e choHof1.scaffold_62212 1293 23 - 9315 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=808.000000 s mm10.chrUn_GL456366 28783 1 + 47073 G s ochPri2.scaffold_1488 243752 1 + 247752 A i ochPri2.scaffold_1488 C 0 C 0 s micMur1.scaffold_20543 6314 1 - 11586 A i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 158158 1 - 2194741 G i dasNov3.JH582505 C 0 C 0 s choHof1.scaffold_62212 1316 1 - 9315 G i choHof1.scaffold_62212 I 23 C 0 s galGal4.chr4 48936049 1 + 90216835 G i galGal4.chr4 I 2 C 0 s fr3.chr18 3108758 1 + 8053132 G i fr3.chr18 C 0 N 0 s danRer7.chr21 25808354 1 - 44544065 A i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130249 96 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=26.000000 s mm10.chrUn_GL456366 28784 1 + 47073 T s ochPri2.scaffold_1488 243753 1 + 247752 A i ochPri2.scaffold_1488 C 0 C 0 s micMur1.scaffold_20543 6315 1 - 11586 T i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 158159 1 - 2194741 T i dasNov3.JH582505 C 0 C 0 s choHof1.scaffold_62212 1317 1 - 9315 C i choHof1.scaffold_62212 C 0 N 0 s galGal4.chr4 48936050 1 + 90216835 T i galGal4.chr4 C 0 C 0 s danRer7.chr21 25808355 1 - 44544065 T i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130249 96 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=-736.000000 s mm10.chrUn_GL456366 28785 3 + 47073 TTT-- s ochPri2.scaffold_1488 243754 3 + 247752 GTT-- i ochPri2.scaffold_1488 C 0 N 0 s micMur1.scaffold_20543 6316 3 - 11586 CTT-- i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 158160 3 - 2194741 TTT-- i dasNov3.JH582505 C 0 C 0 s galGal4.chr4 48936051 3 + 90216835 CTT-- i galGal4.chr4 C 0 I 3 s danRer7.chr21 25808356 3 - 44544065 --TGC i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130249 96 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=-1628.000000 s mm10.chrUn_GL456366 28788 5 + 47073 --ATCAG s micMur1.scaffold_20543 6319 5 - 11586 --ATTGG i micMur1.scaffold_20543 C 0 C 0 s dasNov3.JH582505 158163 5 - 2194741 --TTTAG i dasNov3.JH582505 C 0 C 0 s galGal4.chr4 48936057 5 + 90216835 --GTTTG i galGal4.chr4 I 3 C 0 s danRer7.chr21 25808359 3 - 44544065 ACA---- i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130249 96 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=573.000000 s mm10.chrUn_GL456366 28793 12 + 47073 TACATTCTTTAA s micMur1.scaffold_20543 6324 12 - 11586 TTCTTCAATTGA i micMur1.scaffold_20543 C 0 C 0 s oviAri1.chr26 27719046 12 + 50101229 CTCTCCCCTTGA i oviAri1.chr26 N 0 N 0 s dasNov3.JH582505 158168 12 - 2194741 CTGTCCTCTTGA i dasNov3.JH582505 C 0 C 0 s galGal4.chr4 48936062 12 + 90216835 CACCTTTTCTAG i galGal4.chr4 C 0 C 0 s danRer7.chr21 25808362 12 - 44544065 TACATTTTGCAG i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130249 96 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=-2707.000000 s mm10.chrUn_GL456366 28805 20 + 47073 -----------ATGTCA-TGTCTTATTGATAC s micMur1.scaffold_20543 6336 20 - 11586 -----------ATTTCA-TACCTTATTGATGC i micMur1.scaffold_20543 C 0 N 0 s dasNov3.JH582505 158180 21 - 2194741 -----------ATGTCATTATCTTACTGATGT i dasNov3.JH582505 C 0 C 0 s galGal4.chr4 48936074 15 + 90216835 -----------------CAGTAAGATTGATAT i galGal4.chr4 C 0 I 1 s danRer7.chr21 25808374 28 - 44544065 CTCTGCTCTACATGTAT-TATTTTGCCAA--- i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130249 96 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=-3181.000000 s mm10.chrUn_GL456366 28825 31 + 47073 TGAAATTTAAAATGA-------ATTTATACATT------AACAC s dasNov3.JH582505 158201 29 - 2194741 TAAAATATATAATGT-------ATTT-TACTTT------AATG- i dasNov3.JH582505 C 0 C 0 s galGal4.chr4 48936090 34 + 90216835 TGGAATCCAGGCAAA-------GTGG-TACATTTTTAAGGAC-- i galGal4.chr4 I 1 C 0 s danRer7.chr21 25808402 37 - 44544065 TAAACTTTTTAGTGATGGTGAGATTG-TACAAT------AGTAT i danRer7.chr21 C 0 C 0 e turTru2.JH472462 130249 96 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=-1107.000000 s mm10.chrUn_GL456366 28856 1 + 47073 -A s turTru2.JH472462 130345 1 - 771398 -A i turTru2.JH472462 I 96 I 39 s galGal4.chr4 48936124 1 + 90216835 -A i galGal4.chr4 C 0 C 0 s danRer7.chr21 25808439 1 - 44544065 T- i danRer7.chr21 C 0 C 0 e eriEur1.scaffold_342152 23329 134 - 90678 I e dasNov3.JH582505 158230 0 - 2194741 C e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=804.000000 s mm10.chrUn_GL456366 28857 4 + 47073 ATTA s dasNov3.JH582505 158230 2 - 2194741 --TA i dasNov3.JH582505 C 0 C 0 s galGal4.chr4 48936125 4 + 90216835 AGTA i galGal4.chr4 C 0 C 0 s danRer7.chr21 25808440 4 - 44544065 GTTA i danRer7.chr21 C 0 N 0 e turTru2.JH472462 130346 39 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=634.000000 s mm10.chrUn_GL456366 28861 12 + 47073 AATTAAATACAT s dasNov3.JH582505 158232 11 - 2194741 GATCAAAT-CAT i dasNov3.JH582505 C 0 C 0 s galGal4.chr4 48936129 12 + 90216835 ATTTAAACCTAT i galGal4.chr4 C 0 N 0 e turTru2.JH472462 130346 39 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=637.000000 s mm10.chrUn_GL456366 28873 18 + 47073 TTTTTGAAAATGTGGAAA s dasNov3.JH582505 158243 18 - 2194741 TTCTTAAAATTCAGAAAA i dasNov3.JH582505 C 0 N 0 e turTru2.JH472462 130346 39 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=0.000000 s mm10.chrUn_GL456366 28891 4 + 47073 GGat e turTru2.JH472462 130346 39 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e sorAra1.scaffold_187062 23018 357 + 26575 I e rn5.chr7 143074480 36791 + 143501887 I a score=91.000000 s mm10.chrUn_GL456366 28895 1 + 47073 t s sorAra1.scaffold_187062 23375 1 + 26575 t i sorAra1.scaffold_187062 I 357 C 0 e turTru2.JH472462 130346 39 - 771398 I e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=207.000000 s mm10.chrUn_GL456366 28896 1 + 47073 g s vicPac1.scaffold_225 230465 1 - 1296262 A i vicPac1.scaffold_225 N 0 N 0 s turTru2.JH472462 130385 1 - 771398 G i turTru2.JH472462 I 39 N 0 s sorAra1.scaffold_187062 23376 1 + 26575 g i sorAra1.scaffold_187062 C 0 N 0 e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=0.000000 s mm10.chrUn_GL456366 28897 7 + 47073 aaaggag e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e pteVam1.scaffold_5102 16050 14312 - 113820 I e rn5.chr7 143074480 36791 + 143501887 I a score=-114.000000 s mm10.chrUn_GL456366 28904 1 + 47073 c s pteVam1.scaffold_5102 30362 1 - 113820 A i pteVam1.scaffold_5102 I 14312 C 0 e eriEur1.scaffold_342152 23329 134 - 90678 I e myoLuc2.GL429793 1290731 346 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=573.000000 s mm10.chrUn_GL456366 28905 2 + 47073 tc s pteVam1.scaffold_5102 30363 2 - 113820 TC i pteVam1.scaffold_5102 C 0 N 0 s eriEur1.scaffold_342152 23463 2 - 90678 TC i eriEur1.scaffold_342152 I 134 C 0 e myoLuc2.GL429793 1290731 346 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=182.000000 s mm10.chrUn_GL456366 28907 2 + 47073 at s eriEur1.scaffold_342152 23465 2 - 90678 AT i eriEur1.scaffold_342152 C 0 C 0 e myoLuc2.GL429793 1290731 346 + 10587614 I e rn5.chr7 143074480 36791 + 143501887 I a score=-678.000000 s mm10.chrUn_GL456366 28909 2 + 47073 ga- s myoLuc2.GL429793 1291077 2 + 10587614 -AG i myoLuc2.GL429793 I 346 N 0 s eriEur1.scaffold_342152 23467 2 - 90678 -AA i eriEur1.scaffold_342152 C 0 C 0 e rn5.chr7 143074480 36791 + 143501887 I a score=100.000000 s mm10.chrUn_GL456366 28911 1 + 47073 g s eriEur1.scaffold_342152 23469 1 - 90678 G i eriEur1.scaffold_342152 C 0 N 0 e rn5.chr7 143074480 36791 + 143501887 I a score=0.000000 s mm10.chrUn_GL456366 28912 15471 + 47073 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ggacctcccatcctggttgaagccttgggttcagaagaacaagccgggctcctgagtcctagctctccgcgactgagagaaaaaaactaagataaaaacggtgggggccttggctcctcccaaaatctatacagagatagaagaacctccagaatggcgtaacaccccacccccatatccccaactggtctcctccaagatccctcaacaaggtgccgctggagaagcagcatagagaccagctgctggaacccgaagccggtgagcttggagtccagagggaccagactcaaccaccgtgctgcctttacgtacttatggcccccctccagtagaccccggacaactgcagccccttcagtactggcctttttcctcctctgatctctataattggaaggcaaatcactcccccttctctgaaaacccctctagccttactaatctaatggaatctctcttgttctctcatcagcccacttgggatgactgtcaacagcttttacaggttcttttcaccacagagaaggagagtattctgctggaggcaagaaagaatgtgctgggggccaatggactaccgacagaacttccaaatgaaatagatgcagacttccctctgacacgtccagactgggaccctaacaggcctgaaggtagggagtggctgacaattttccgccggtctctggtagcaggactgagaggagctggcaggtgccccaccaatttggccaaggtaacaaagatcctacaagaggaaaaggagctcacaatagtgtttctagagtgcctcttagaagcatacaggtgatacactacctttgaccctatgtcagagggccagcaggtggaggttgccatggctttcactgggcagtctgcttttgacattaggagaaggttacagtgtctagagagtctgcaaacattatctttgcaagatctggttaaggaggcagagaaagtgtaccataagagagagaatgaagaagaaaaaagagGGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtccctgaattccccttaaagaatagccccgctggccatctatcccttgcttcagggaagatgagcggggatgagagccctgggatgtatgcttgttatagtgtgtgtgtgttttgtgtttggcacatgtgttaggtgcagagtgtgcggcccgcactttcgccatggtagcgtaggcttttgctgcagtggaggcgggacaatctcctcagattcggtttgccgctctaaaagaaattatgctgtgttatgccgtggggtgcgaggctaagcactgcacagaggatagcttgctgttggcatcctgtggaaggcacgtctgattgcatgaaggttcagtgtcctagttcccttcccccaggaaaaacgacacgggagctggccaagacctctctgggtgatgagcctaagggatggttttgtgtagggcccctatgcttgcacactggggatcagacctctaccttcacccatgaggcttgcttgcagcaattaagatctggccataggttaattaacatcctggccttttgatgcacctgccgcaagcaaaacacaatctccccaggagtggcttggcatgattgagaggtagtcagtgataagactccctgggcatgtcaccaacctaagacagggatcaaaccaatgctgtttgtctcccaaagacaggtaaggggcatagtttcgaggggctatctacagacattctctctgccaaaaaagaaaaaagggggaATtgtggggagcgggtgtggcagcagtcccaaaggcgccagggactgcagataagtcatatgacttgcacctgacttcctcatataagacacaaacatcttgagtgctgcgcaggtgtaccaggatacaggtgaatccaatttggtggagatttgcccctgctgccctgattagctgaagcctcgtgactggcgagggggcatggcctgcggtgcgtggatgagagagagtataaaaggagtgagaggcccagggttcaggggagatataaacaagaagaatcaggactgaataaactgttagaaggactggtggtcgcgtcgttcttgctggtcgagagcgggcgtgaca e rn5.chr7 143074480 36791 + 143501887 I a score=17088.000000 s mm10.chrUn_GL456366 44383 251 + 47073 GGTGGTTAGCATTAATTTTCCTTATTTTAGTGCACAAGGAATCCAGCTTCTCTGGTAAAGAAACTATGGCCATATACTCACTCAGCATTTGTCCAGCACAGATCACCAAGCACAATGATAAACAACAGTCCAGATATGAAAGAGAAGCAATACCTGGAGAAGGTTCCTCAGTACTTTGTCCTCTGAGGGCAAGCGCCATCCTCCATCACTGCCCTATCTCTCAGAGAAAAGCTGCTCAGTTGAAGCCTCCC s rn5.chr7 143111271 238 + 143501887 GATGATTAGCATTAATTTTTATTCTATTAGTGCACAAAGAATCCAGCTTCTCTGATTAAGAAATTATAGCCATTTACTCACTCAACATCTGCCCAGTACAGATCACCAAGCAAAATGACAAACAACAGTCCGGATATGAGAGA------------GGAGAAGATTCCTCAGCACCTTGTCCTCTGA-GGCAAACACCATCCTCCATCACTGCCCTTTCTCTCAGAGAAAAGCTGCTCATTTGAAGCCTACC i rn5.chr7 I 36791 C 0 a score=8350.000000 s mm10.chrUn_GL456366 44634 99 + 47073 ATTCTTTCATTTT-------TACAGTAT----ATATTACCTGGACTTATTTTTTAGAGATCTGAATCAGATCAGAAATGTGAATTTTATAAAATGATGCTTGACATATGC s rn5.chr7 143111509 106 + 143501887 ATTCTTTCATTTTATATATATTCAGTAT----ATATTACCTGGACTAATTTTCTAGAGATCTGAATCATATGAAAAATGTGAATTTTATAACAATATATCTGACTTATGC i rn5.chr7 C 0 I 899 s micMur1.scaffold_7796 7674 98 - 83308 ACTTTTACATTTA-------CACAACCTCAGAAtatttcatagagtgactgt---gagatataaattacaacatacatgtgaa-tttagaacacagtggctg-tgtatgt i micMur1.scaffold_7796 N 0 C 0 a score=5999.000000 s mm10.chrUn_GL456366 44733 61 + 47073 ATAAAATATGATACAGTATAATATAATGGGTATTACTTTAAAGT----TGAAGGGCTAGGAAAAA s rn5.chr7 143112514 61 + 143501887 atataatatattacaatataatataatTGGTATCATTTTAAAGT----TGAAGGGCAAGGAAAAA i rn5.chr7 I 899 I 6496 s micMur1.scaffold_7796 7772 61 - 83308 ---ttagattcaacaa-atgttgTACTCAATACTATGTGAGAGTTGAATGAAGGACAGGGAAAAA i micMur1.scaffold_7796 C 0 C 0 a score=-64.000000 s mm10.chrUn_GL456366 44794 4 + 47073 AAAA s micMur1.scaffold_7796 7833 4 - 83308 TTAA i micMur1.scaffold_7796 C 0 C 0 e rn5.chr7 143112575 6496 + 143501887 I a score=35617.000000 s mm10.chrUn_GL456366 44798 472 + 47073 --------------------CCCTCATGCTAAATAAATTTTTAAACTTTAAGAAGTCTCCTGATTTATGTT-TTAACAGTCATCCATG---AAGAC-----------CTCATCACAAAGCCATTTTCTATTTCAATTTTTAGAATAGTCTCCAAAGAAAACATGACTTTT---ATTTAAGAAAAAGAAAAGCCATG--CAGTTGCCATGCTACATGGAGA--CAC-----TTGACACTTTCAATGA--TTTCTGCTGTATTTACATTGTCTCCAACAGATC-TAATATTGAAAGATAGATGCAGCTAAAATTGATAGCATACTCTTGATCAACTTCTGATCCTT-CTGGTGCTTATATATAAACAATATGATGAACTTAGAAAAGAGGAAAAA-------------------AAGAAGGGTCTCTTCTTCTCCCTCTCCTTACCCTCTCCTACTTCCT---CATGAAAGTACAGTTCACTGTAGCCATGGGGAACCTAAGGATTCAGAGAGTTCCATAAAGAACAAAATTAGTTGAAATGTTTTT s rn5.chr7 143119071 460 + 143501887 --------------------CCGTCATCCGTAATAAAATTTTAAACTTTTAGAAATCTACTGATGTATGCT-GTAACAGTCATCCATGG--AAGAC-----------CTCATCACAAAGCCATTTTCTTCTCCTATTTTTAAAATAGTCTCTAAGGAGAACAAAATTTAT---ATTTAAGAAAAAAAAACCATGCA--CAGTTGCCATGCTACATGGAGAGACAC-----TTTACACTTTCGATGA--TTTCTGCCGAAAGTACATTGTCTCTAATGGACCCTAATATTGCAAGCGTGATGCAGTTAAAATTGATAACACACTCTTG-TCAACTTCTGATCTTTTCTGGTACTTATATA--GACAATATGATGGATTTAGAAAAGAGAAATAA-------------------AAGAAAAGTCTC--------------CTTACCCTCTCCCACTCCCT---CCCTAAAATACACTTCACTATGGCCATGGGGAACCTAAGGAATCTATGAGTCCCATAAGGAACAAAGTTAGATGAAGTATTCTT i rn5.chr7 I 6496 C 0 s micMur1.scaffold_7796 7837 513 - 83308 CCCAGAATAGAAAAACTATTCCTTGATCCTTAATCAATTTACAAATTCCCAGAAATATCCAAAATAATACTCAAAACAATCTTCCCCAGGAAAGATCATAAAGTTGACTCATTGTTAAGCTATATT------CAGTTTTCAGGAAATTCTCACAAGAAAAAAAGAATTGTCTGATTTAAAAATTATGTAATATGTAATCAATTACCTTGCCACATAAAGG--CACATAATTTGGTCTTATCAATGATGTTTCTATTAAAGAACAGTTATCCTTAATAAATGTTAACATTTCAATCC--ATCCAGGTAGTATTGCTAAACTAGGAGTAACAAGCTCATGACTCCT-GTGATATTTATCTGTTGAC-------TTGACTTAGAAAAGCACAAGAAATTCGTAAACATTGTGAGGAAAATAGGGCATTTCT----------CTTATCTTCTCC--CTCCCTGACACCAAAAATATAG-TCTCTGGGGGAATAGAGAACCCAGGAAATCCA-GAGTCACATAAAGGAAGCAATTAGATGGAATGTTCTT i micMur1.scaffold_7796 C 0 I 66 a score=3247.000000 s mm10.chrUn_GL456366 45270 261 + 47073 TTTTTTAAACCGGTTTTGAGGTCTTCAAATTTAGTTTTTGCATTGGCAACTTCTTTTCAGAGTTGTCAACGTCATTGTTCTGATCAGAGGTATTATCCCCGGTACTGTTATCATC-------TGTCTCTTGTCTTCCTCAGAAGCATCATTAGCAGTGTTGGTATTATCAGTGTTCACACTTTGTTCATTGACTGAATCAGAGGAATCAACTTCTTGATTTTGACTGGTACTATCTGCCTGAGTTTCAGAGCCAGTATTTCCACCAGT s rn5.chr7 143119531 218 + 143501887 -------AAAGGGTTTTGGGCTGTT---ATTCCTCTTCTTCCTCTCCA--------------TCATCATCCCCTTCTTCCTCATCGGAGGACTCATCTGCAGTAGTGTCCTCATCACCTGAATCTTCCTGATCCTGGTCAGCAGGCGCATCACCATCGCCGGCATCACTAGT---------------------TCCATCAGAGGACTCAGCATCTTGCTGTCCATCAGTAGCGTCTGCCTGAGTTCCAGAGTCAGTGGTTCCA----- i rn5.chr7 C 0 C 0 e micMur1.scaffold_7796 8350 66 - 83308 I a score=26553.000000 s mm10.chrUn_GL456366 45531 299 + 47073 AGAATCAGCTAAAATTAAAAGAAAAATCTCCAAGTGAGATACTGACACATTTTT--GGAATGTTATTGGTCCCACCCAGAATTATGCATTCATTCTTTATTCTGAATTCA---CTAATTCTATCAAATATTTAGT-------------------------------CTATCACATATGTTATTGCTTTATCTTT----------CACAACCTTACAATTTTCTT----GGGCAATGACA-CTGACC-AAGACATAAGCAGGCACTTTGTGACAGGCATGAACATAAAAATAAAGCCCAAGCTAGTTACAGGCACTATTGTCCAAAATTCACAAAGAAACTTCCTAGGCAAC s rn5.chr7 143119749 275 + 143501887 ----TCAGCTGAAATTAGGAGGAAAACCTCCAAGTGAGATACTGACTCTTCTTT--GGAATGATATTGGTCCCACCCAGAATTATACATTCATTCCATATTCCGAACTCA---CTAATTCTGTCAAATACTTCGT-------------------------------CTATCATATATGTTATTGCTTTATCTTT----------CATGACCTTACAATGACCTT----GGGCAATGACACCCAACC-AAGACACAAGCAAGTACTTAGTGACAGGCATGAACACAAAAATAAAACCCAAA--------------------CCCAAATCCACAGAGAAACTT-CTAGGCAAA i rn5.chr7 C 0 C 0 s micMur1.scaffold_7796 8416 334 - 83308 AGGAACGGCTGAAATTAGGAAGAAAAGTTCCAGGTAAGACTTTGACTCTTCTTCAGGGAACACAATTTCTCCCACCCAGGAGTGGGCATATATTTCCCAACCTCAATTCATCTCTGCATCTATCATAAATTCTGTAATACCTTTACCCTACCTGCTTCCTTTCCACCTGTCTCATAT-TCCCTGCCTTGTCCTTGCTAGGACAGAAAGAATTTGAGATTTCCCTCCAAGAGCAATGGCA-CTGACTGAAGGGATGAGAAAGTACTTTCTCCCAGGCCTGAGAACA-----AAAGACCAAT---TTCACATGTGGTGTT-------ATTCACAGGACTACTTCCAGAGCAAC i micMur1.scaffold_7796 I 66 I 1212 a score=8118.000000 s mm10.chrUn_GL456366 45830 145 + 47073 TGGTACTGGCCTCCAGTGCCAGTTCCAAGAAGAAAATCAAACATGATTCTGAGACTAACACACCTATGTGAAGCACAGGCCTCTGCTTCTGCCTCAACCCACCCTGGCATATGTTCCCAGGCCCTCAGTCCATAGCGATTTCAGG s rn5.chr7 143120024 138 + 143501887 -------AGCCTCCAATGCCAGTTCCACGAAGGGAAACAAACATCATTCTGAGACTAGCACAGTGATGCAAACAACAGGCCTCTGCTGCTGCCTCAACTCACCCTGGCAATACGTCCCAGGCCCTCACTCCATGACACCTTCAGG i rn5.chr7 C 0 C 0 e micMur1.scaffold_7796 8750 1212 - 83308 I a score=36038.000000 s mm10.chrUn_GL456366 45975 435 + 47073 AATTTGCTGTCTGTTTCAGTGA-CAATTGCTCTCTTC--TACACATGAGTTATAAAATCAATCCTACCTTTAATTTGTGGAAGACCTTCTGTGCACTCACATATAAAATTAAAGTTAGAGTATCAGACTTCATGACCTTTTATCTACTACATAAGAACAATGAATGCCTAGAGTTCCTCTTAGTCAATGTCAGAGGT-TTAATTATCTTTATATGAGGAATAAAATGTTGTCTTTACATTAAAAATA-ATTTTATAATCGAGATTGAAGCTTTCCATCA-TTTTACTAAAATTTCCTCACATATCATAATATCCAAATGAT-----ATTGGTTACCAAGAGCCTGTGAAGGGAAAA---TGGTTATGGTAGGAAGGTAATGAATGGTACTCGGACTCAGACTCACCAGTTTCAGAAGTGTCAGCACTGTTTGTCTCCGTGTCCTCTAAA s rn5.chr7 143120162 422 + 143501887 AATTTGTTGTCTGTTCCAGTGA-CAATTGCTCTCTTTTATACACATGAGTTATATATTCAGT----CCCTTAATTTGTGGAAGGCCTTCCATGCACACACATGTAAGAGTTAAGCTACAGTATCAGACTTCATGACCTTGTGTCTACTGCATAAGAACAATAAATGCCTAGAGCTCCTCTAAGTCCATATCAGAGGC-CTAATTATCCTTAGAGGAAGAATAGAATGATATCTTTACATTCAAAATA-ATCTTATAACCAGGAATGCAGCTTTCTGTGGTTTTTACTAAAATTTTCTCCCATCTCATAATATGCAAATGAC-----ATTGGTTACCGAGAGGCTATGGAGGGAAAA---TGGTTATGGTAGGAAGGTAAT-----------AGACTCAGGCTCACCAGTATCAGAAGTGTCAGCAGTGTCTGTCCCTGCGTCCTCT-GA i rn5.chr7 C 0 C 0 s micMur1.scaffold_7796 9962 424 - 83308 AATCTGTTACTTCATTCTGTGACCCACTGGTCTCTTG--TTTACAATGGCCATATATTCAGT----CCTTCAGTTTATTAAAGACTTTACATGCATTTTCCAAAAATTCTCAGGCCTAAATGTCACACCTCATGCACTTGTG-CCACTGTCTGAGAAACGTTGA-----AGAACTCCACAATTTAGATTTCATATTCTCTAACAATGTATAAGAGACAAATAG---GTTAACTTT--GTTCACAATGCATGTTAGCATCAGTAATACAGCTTTCTCAGGCTTCTGTTTGGGATTCTGTACAACTTTGAATATCCACATGCAAGCTGATTATTTGCCATGAG-CTGGAAATGGAAAACACTCGTTGCGGAAAGGAGTTAAA-------GTTCAAGAACAGTCTCACCAGCAGCAACGGTGTCAGCTGGAGCAGCTGTAGTATCCTCTGAA i micMur1.scaffold_7796 I 1212 C 0 a score=546.000000 s mm10.chrUn_GL456366 46410 1 + 47073 A s rn5.chr7 143120584 1 + 143501887 A i rn5.chr7 C 0 C 0 s micMur1.scaffold_7796 10386 1 - 83308 A i micMur1.scaffold_7796 C 0 C 0 s vicPac1.scaffold_5828 50902 1 + 56983 A i vicPac1.scaffold_5828 N 0 I 151 a score=12719.000000 s mm10.chrUn_GL456366 46411 135 + 47073 GGAAAATAAGCAAAATAAGAC---AGAAGAACTTAAGT--AAAGTTTTGATGAGTTAGAGAATGTAAACACTACTACAGACATGTACAA----------------CCAAGTAGACAGATTGAGGG-AAGCACATGCACAGAT-AAAGAAAACCTTTGA s rn5.chr7 143120585 125 + 143501887 GAAAAATAAGCAAAATAAGAC---AGAAGAACTTAAGC--AACATTTTGATGAGATAGAGAATGTG-----------AGACATTTACAA----------------CCAAGTAGATAGATTGAGGG-AAGCACATGCACAGGTAAAAGAAAACCTTTGA i rn5.chr7 C 0 C 0 s micMur1.scaffold_7796 10387 157 - 83308 GAGAAGAAGGAAAAATAGGATGCAAGATGATCACAAGTTGGGGGATTGGAGGAAAAAGAAAATGTGGACAGTATTTCA-ACTTTTACAATGGAAAAAGCTCAGTCCTTGGTACAGAAATTGAAGATGAACACATGCACAGGTAACGTGAAACATGTGA i micMur1.scaffold_7796 C 0 C 0 e vicPac1.scaffold_5828 50903 151 + 56983 I a score=233.000000 s mm10.chrUn_GL456366 46546 2 + 47073 CA s rn5.chr7 143120710 2 + 143501887 AA i rn5.chr7 C 0 C 0 s micMur1.scaffold_7796 10544 2 - 83308 TA i micMur1.scaffold_7796 C 0 C 0 s vicPac1.scaffold_5828 51054 2 + 56983 CA i vicPac1.scaffold_5828 I 151 N 0 a score=13253.000000 s mm10.chrUn_GL456366 46548 143 + 47073 GCTAAC-------------TGTGGTCAGTTTTGCTTCCCTGAAATAAGTCTTTAGTCACATTCTCAAATGTAACTTATTGACACCAAGAAAGCATTTCAGTGCCATGTTCAGAATAGAGGAAAAACTGGACTGAATTAGGAA----CCCCGGTGGAGTCA s rn5.chr7 143120712 127 + 143501887 TCTCAC--------------ATGGTAAGTTTTGCTTCCCTGGAATAAGTCTTTAATCACCTTCTCAAATGTAACTTATTGATCCTAACAAAGTGTTTCAGT---------------GATGAAAAACTGGACTGAATTTGGAA----CCCCAGAGGAATCG i rn5.chr7 C 0 C 0 s micMur1.scaffold_7796 10546 152 - 83308 TCCCATAGAAAACCTAACATGTGGTCATGTTTTCTTTCCTGAAATAAACCTCTGATTACCTTCTTAAACATATTTTATTGACAATAACAATAAAATTGCATTCCATGGTTACT--------AACATTTGACTGAATTAAGAAAATCCCTAGGAGAAATCA i micMur1.scaffold_7796 C 0 N 0 a score=15193.000000 s mm10.chrUn_GL456366 46691 259 + 47073 ----ACCTACCTACTTACAATGATGTGTCAAAG--TGGAGGTGAGTAccagcaagatggctcaataggtaaaagctcttctcttacaagctgggtgatatgagctgatcccatagttgaaggagagaactgactcctgtctctaaccttctcacatgcATGACAATATGTTTGAGACCCTGACACCATAGGGCATGTGCA--------------------------------------------------------------------------CAGGATGTAAAGTGaataaataaattaataaaaaagaaaaaaaCCGTTTAAGTTTAAAAATTGAg s rn5.chr7 143120839 326 + 143501887 ACCTACCTACCTACCTACAATGATGTGCCAAAAACTGGAGGTGAGTGCCAACAAGGTGACTCAGTAGGTAAAATCTCTTCTCGTACAAGCTGGGTGATATGAGC------------TGAAGGGGAGAGCTGACCCCTGTCTCTAACATCCTCACATGCACCACAATATGTTTGAGACCCTGATACCATATGGCATATGcacgcacacacacacacacacacacacacacacacacacacacacaaacacacacacaAATGATAAAAAATGCAATCAAGATGCAAAGTGaataaataaattaataaaaaaG-AAAAAACTGCTTAAGTTTAAAAATGGAG i rn5.chr7 C 0 N 0