##maf version=1 scoring=roast.v3.3 a score=718.000000 s mm10.chrUn_GL456372 287 30 + 28664 GTGCTCTTCCTCTACGGCATAAAGCACTGT s tarSyr1.scaffold_134549 3234 30 - 5654 ACAAGCTGTTTCTATGTCATGCCGCACTGT i tarSyr1.scaffold_134549 N 0 N 0 a score=-31.000000 s mm10.chrUn_GL456372 872 1 + 28664 T s tarSyr1.scaffold_28366 7894 1 + 22953 C i tarSyr1.scaffold_28366 N 0 I 2027 a score=0.000000 s mm10.chrUn_GL456372 873 150 + 28664 GAGTCTAAGGACAGCCCTCTCTGCTTTTCTCCCCTTTTTTTCTCCTGAGGTTGCAACCACAGCCTCTCATTTGGCATGTGCATAGTCTCCCTCCACAGCCCAGTCAGTGTTACTTTGCACAGGGCCAGCAGAAGGGCTGGGCATCCTTTG e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=69.000000 s mm10.chrUn_GL456372 1023 2 + 28664 CA s tupBel1.scaffold_131861.1-4953 3655 2 + 4953 CG i tupBel1.scaffold_131861.1-4953 N 0 I 170 e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=0.000000 s mm10.chrUn_GL456372 1025 640 + 28664 GGTCTTCTTTCTGACCATATCAGttcttagaagggggaacaaaatacccagggaaggagttacagagacaaagttcagagcagagactgccatacctggggatctatcccataaacaaccaccaaacctagacactattgcagatgccaacaagagcttgctgaaggagcctgatatagctgtctcctgagaggctctgccagtgcctgactaatacaaaggtagatgtacacagtcatctattagacggagcacagggtccccaatgaagaagctagagaaagtatctaaggagctgaaggggtttgcagccccataggaggaacaacaacataaattaaccagtagccccagagatccctgggattaaaccaccaatcaaagagtacacatggcgggattcatggctatagctgcatatgtagcagaggattgcctagtggtcatcaatgggaggagaggcccttggtcctgtgaaggttctatgccccagtatagggtaatgccaggaccaggaagcaggagtgggtgggttggggagcagggggaggggggagaggataggggattttcggaggggaaactaggaaaggggataacatttgaaatgtaaataaagaaaatatctaataaaaaaaaa e tupBel1.scaffold_131861.1-4953 3657 170 + 4953 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=6163.000000 s mm10.chrUn_GL456372 1665 105 + 28664 TCGTTACTGGCAGCTGAAGGAGGAGGGAAAAACCACGGGTTGTAGGAAGAAGAGTAAAATGGCCCAAAGcagtggttctcaacctgtgggtctcgattcctttgg s rn5.chr9 92338222 101 + 121549591 TTGTTACTGGCAGCTGAAGGAGG---GAAAACCCACAGGTTGCAGGGAAGAGGG-GGAATGGCCTGAAGcagcagttctcaacctgtgggtttcgacttcttccg i rn5.chr9 N 0 C 0 e tupBel1.scaffold_131861.1-4953 3657 170 + 4953 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=-115.000000 s mm10.chrUn_GL456372 1770 15 + 28664 ----caaacctctatctct s rn5.chr9 92338323 15 + 121549591 ----caaacctctttctcc i rn5.chr9 C 0 C 0 s echTel1.scaffold_187355 4909 8 - 8640 GGGTCGAA----------- i echTel1.scaffold_187355 N 0 I 9 e tupBel1.scaffold_131861.1-4953 3657 170 + 4953 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=-21.000000 s mm10.chrUn_GL456372 1785 9 + 28664 caaac-tatt s rn5.chr9 92338338 10 + 121549591 aaaaaatatt i rn5.chr9 C 0 C 0 e echTel1.scaffold_187355 4917 9 - 8640 I e tupBel1.scaffold_131861.1-4953 3657 170 + 4953 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=-346.000000 s mm10.chrUn_GL456372 1794 7 + 28664 tacattg-- s rn5.chr9 92338348 7 + 121549591 tacgttg-- i rn5.chr9 C 0 C 0 s echTel1.scaffold_187355 4926 7 - 8640 --CGCAGGG i echTel1.scaffold_187355 I 9 N 0 e tupBel1.scaffold_131861.1-4953 3657 170 + 4953 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=9024.000000 s mm10.chrUn_GL456372 1801 130 + 28664 tgatacataacagcagcaaaattacagttatgaagcagcaatgaaaataacgttatggttgagggtcaccacaatataaggaactgcattaaagcgcagtagcattaggtaggttgggaaccactgGCCT s rn5.chr9 92338355 130 + 121549591 cgatgcacagcagcagcaaaattacagttatgaagcagaagcaaaaataacatgatggttggggatcaccacaacagaaggaactgcattagactgtagtagcattaggacggttgagaaccactgGTCT i rn5.chr9 C 0 C 0 e tupBel1.scaffold_131861.1-4953 3657 170 + 4953 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=180.000000 s mm10.chrUn_GL456372 1931 1 + 28664 A s rn5.chr9 92338485 1 + 121549591 G i rn5.chr9 C 0 C 0 s turTru2.JH490333 16988 1 - 53618 A i turTru2.JH490333 N 0 I 1566 s choHof1.scaffold_211216 2731 1 + 3719 A i choHof1.scaffold_211216 N 0 C 0 e tupBel1.scaffold_131861.1-4953 3657 170 + 4953 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=2447.000000 s mm10.chrUn_GL456372 1932 21 + 28664 AAGTCTCAGGAAAGGTGAAGT s rn5.chr9 92338486 21 + 121549591 AAGGCTCAGGAAAGGTGAAGC i rn5.chr9 C 0 C 0 s choHof1.scaffold_211216 2732 21 + 3719 AAATGCTGGGGTGGATGGAGC i choHof1.scaffold_211216 C 0 C 0 e turTru2.JH490333 16989 1566 - 53618 I e tupBel1.scaffold_131861.1-4953 3657 170 + 4953 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=1650.000000 s mm10.chrUn_GL456372 1953 4 + 28664 ACCA s rn5.chr9 92338507 4 + 121549591 ACCA i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26001285 4 + 30916457 TCCA i myoLuc2.GL429770 N 0 C 0 s choHof1.scaffold_211216 2753 4 + 3719 ACCA i choHof1.scaffold_211216 C 0 I 119 e turTru2.JH490333 16989 1566 - 53618 I e tupBel1.scaffold_131861.1-4953 3657 170 + 4953 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=-227.000000 s mm10.chrUn_GL456372 1957 3 + 28664 A-----GG s rn5.chr9 92338511 8 + 121549591 AAGGAAGG i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26001289 3 + 30916457 A-----GG i myoLuc2.GL429770 C 0 I 2459 e choHof1.scaffold_211216 2757 119 + 3719 I e turTru2.JH490333 16989 1566 - 53618 I e tupBel1.scaffold_131861.1-4953 3657 170 + 4953 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=7409.000000 s mm10.chrUn_GL456372 1960 99 + 28664 GCAGAAGCGGGAGTGTCCAGGAATAGGAAGAAGATGCTCTAGCATCTGGGCCTCCCTGGTCACTGGCAGCGCTTGTGATTTTCTTAGAGAGGGTTGTGT s rn5.chr9 92338519 99 + 121549591 GCAGAAGCCGGAGCGTCCAGGCTTAGGAAGAAGATGCTCTGGGATCCGGGCCTCCCGGGCCACTGGCAGCACTTGCGATTTTCTTAGAAAGGGTTGTAT i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 26001292 2459 + 30916457 I e choHof1.scaffold_211216 2757 119 + 3719 I e turTru2.JH490333 16989 1566 - 53618 I e tupBel1.scaffold_131861.1-4953 3657 170 + 4953 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=600.000000 s mm10.chrUn_GL456372 2059 1 + 28664 G s rn5.chr9 92338618 1 + 121549591 G i rn5.chr9 C 0 C 0 s tupBel1.scaffold_131861.1-4953 3827 1 + 4953 G i tupBel1.scaffold_131861.1-4953 I 170 N 0 s dasNov3.JH566347 1752241 1 + 1805508 G i dasNov3.JH566347 N 0 I 8 e myoLuc2.GL429770 26001292 2459 + 30916457 I e choHof1.scaffold_211216 2757 119 + 3719 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=-414.000000 s mm10.chrUn_GL456372 2060 4 + 28664 -TGGG s rn5.chr9 92338619 4 + 121549591 -AAGG i rn5.chr9 C 0 C 0 s choHof1.scaffold_211216 2876 4 + 3719 G-AGG i choHof1.scaffold_211216 I 119 N 0 e dasNov3.JH566347 1752242 8 + 1805508 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=177.000000 s mm10.chrUn_GL456372 2064 4 + 28664 TGGA s rn5.chr9 92338623 4 + 121549591 TGGC i rn5.chr9 C 0 C 0 e dasNov3.JH566347 1752242 8 + 1805508 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=273.000000 s mm10.chrUn_GL456372 2068 1 + 28664 T s rn5.chr9 92338627 1 + 121549591 T i rn5.chr9 C 0 C 0 s dasNov3.JH566347 1752250 1 + 1805508 T i dasNov3.JH566347 I 8 N 0 e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=9421.000000 s mm10.chrUn_GL456372 2069 146 + 28664 GCAGAGAAAGGAACAGGTCAACAAAAGACGGCAATCTGGGGTTCTAATGGACAACAAGCC-----TCTAGGTAGG---------------ACAGACAGGCCGGATCTGTGGCTTGCCTGGAGTGGTTTTTCCTTCCTGAATGCAGCCAGGGAGAGGCACAGCTCGG s rn5.chr9 92338628 166 + 121549591 GCATAGAAAGGAACAGATCAACAAAAGACAGCAATTTGGGGTTCTAATTGACAGGAAGCCAGCATCCTAGGTAGGGTTACAGGCTGTTGGACAGACAGGAGGGCTCTGTTTCTTGCCTGGAGTGGTTTTTCCTTCCCGAATGTAGCCAGGGAGAGGAGCAGCTGGG i rn5.chr9 C 0 C 0 e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=-957.000000 s mm10.chrUn_GL456372 2215 2 + 28664 -GG s rn5.chr9 92338794 2 + 121549591 -TG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 11465 2 + 13480 TT- i dipOrd1.scaffold_37788 N 0 I 209 e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=12055.000000 s mm10.chrUn_GL456372 2217 180 + 28664 AGAAGGACTGGGCTGCTCATCCAGGATCTCAATGATTGGCTGTGCGGTTGCTCTGGGGTCACAGACTCTCGGTGCTGAGGACAGATGACTTGGCAGCGATATCTGGGGTCGGGGTGGTGGCAGCAGTGTCTGAAGGGAGCACCCTTCTGCTGGGTTGGCCAGGTCTTCAAGCAGGGTCAC s rn5.chr9 92338796 178 + 121549591 GGAAGGGCTGGGCTGCTCATCCAGGATCTCAGTGATTTGCAGTGAGGTTGTTCCGGGGTCACGGATTCTCAGTCCAGAGGACAGATGACTTGGTGGCAATGCCTGGGATCGGGGCTGTGGCAGCAGAGTCTGAAAGGAGCACCCTTCTGCTGGGTTGGTTGAGGCTCCAAGTAGGGTT-- i rn5.chr9 C 0 C 0 e dipOrd1.scaffold_37788 11467 209 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=-1197.000000 s mm10.chrUn_GL456372 2397 5 + 28664 GTGGG- s rn5.chr9 92338974 5 + 121549591 GGTGC- i rn5.chr9 C 0 C 0 s proCap1.scaffold_31944 8448 5 + 25514 -GTACA i proCap1.scaffold_31944 N 0 I 976 e dipOrd1.scaffold_37788 11467 209 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=3615.000000 s mm10.chrUn_GL456372 2402 47 + 28664 GGGTCTGTTTTTCTCTTCGTAGGTATAACCAACTGGAATTAGCAAAG s rn5.chr9 92338979 47 + 121549591 GGGTCTGTTTCTCCCTTCATAGGCATTGCCAACTGGAATTAGCAAAG i rn5.chr9 C 0 C 0 e proCap1.scaffold_31944 8453 976 + 25514 I e dipOrd1.scaffold_37788 11467 209 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=38.000000 s mm10.chrUn_GL456372 2449 1 + 28664 G s rn5.chr9 92339026 1 + 121549591 G i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 11676 1 + 13480 A i dipOrd1.scaffold_37788 I 209 I 1091 e proCap1.scaffold_31944 8453 976 + 25514 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=1306.000000 s mm10.chrUn_GL456372 2450 15 + 28664 AACACATGTCAGGAC s rn5.chr9 92339027 15 + 121549591 AGCACATGTCAGGAC i rn5.chr9 C 0 C 0 e proCap1.scaffold_31944 8453 976 + 25514 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=239.000000 s mm10.chrUn_GL456372 2465 4 + 28664 CCCA s rn5.chr9 92339042 4 + 121549591 CCCG i rn5.chr9 C 0 C 0 s oviAri1.chr2 244283985 4 + 263237078 ATCA i oviAri1.chr2 N 0 C 0 e proCap1.scaffold_31944 8453 976 + 25514 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=207.000000 s mm10.chrUn_GL456372 2469 1 + 28664 A s rn5.chr9 92339046 1 + 121549591 G i rn5.chr9 C 0 C 0 s oviAri1.chr2 244283989 1 + 263237078 G i oviAri1.chr2 C 0 C 0 s eriEur1.scaffold_340130 45217 1 - 57563 G i eriEur1.scaffold_340130 N 0 I 3388 e proCap1.scaffold_31944 8453 976 + 25514 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=273.000000 s mm10.chrUn_GL456372 2470 1 + 28664 A s rn5.chr9 92339047 1 + 121549591 A i rn5.chr9 C 0 C 0 s oviAri1.chr2 244283990 1 + 263237078 A i oviAri1.chr2 C 0 N 0 e eriEur1.scaffold_340130 45218 3388 - 57563 I e proCap1.scaffold_31944 8453 976 + 25514 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=26106.000000 s mm10.chrUn_GL456372 2471 435 + 28664 GACTCAGAAGTTATCTGGCAGACAGGATTGCCTAGTTCATCTTTCCGCATGGGACCAGAGGGAGAGTTACTGGTTTCCCCGGGTGCACAGAACAGGCTCATCACCACACGCATCCATTTGTGGCCTCTTCTGACTTTGATTTATTCAGGCACTCAGTGCTATTTAGTCCCCAGTCCATCACCCAAAATGGGTTGACcacatagaaacctactactgtagaaggtccctaaaatatatacatatataaatgttatttaaatggagttaccatataatgagggagacaatgccctgataagttaccatatgctaccaagtaccaggaatggaaaacagtccatctttttggagttattggctaaaggaatcccagaggttcctcctacccctaaacattacaggccaacgatatcgatgaccctccacaacctgctg s rn5.chr9 92339048 395 + 121549591 GATTCAGAAGTTATCTGGCAGATAGGACTGCCTCCTGTATCTTTCCCCACAGGACCGGAGGCAGAATTACTGATTTTCCCAGGTGCACAGAACGGGTTCATCACCACAAGTGTTCACCTGTGGCCTCTTGTGACTTTTATTTATTTGGGCACTCAGTGCTACTTAGTCCCCAATCCAACACCAAAAATGTGTTGAccacatagaaatctactactgtagaaggtccctaaaatatatacgtatataaatggaatttaaagggagctatcatacagtgagggagataatgccctaataagataccataggata--------cagaaatgtaaaatggt--------------------------------ccagaggttcctcctacccctaaacattacaggccaatgctattgactaccctccacaacGTAGTG i rn5.chr9 C 0 I 463 e eriEur1.scaffold_340130 45218 3388 - 57563 I e proCap1.scaffold_31944 8453 976 + 25514 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=0.000000 s mm10.chrUn_GL456372 2906 502 + 28664 gtaagaccccattgctgagggagaaacagacatgaagcaatccagctgttgctcagctagaagcttcatccctactgacgagtgttcatagtgttggaaggttctatggacactaccagaggaggagttatcatcaatgtcacccagctaggaatgctgcgagctacaacagtgacctgcttactcgatgtactttgctggtgcaatgctggcacaagtgttatgggagtgaccaatcaccttttgattggatgtgaggactgttttatgaaatgggacccacaggcaacactggtaatgtggtcaacagcacatgactagatagaccacgggctctagagtaaaacctactacagtcaatctaaatgaatgcaacatcaaaacgactcctgatgatgttttgctTGtcactttgtagaccaggctggcctcaaactcagaaatccccctgcctctgcctcccgagtgctgggattaaaagggtgcaccaccatgcccggct e eriEur1.scaffold_340130 45218 3388 - 57563 I e proCap1.scaffold_31944 8453 976 + 25514 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e rn5.chr9 92339443 463 + 121549591 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=17851.000000 s mm10.chrUn_GL456372 3408 265 + 28664 tcctcaccaggttctattgggaccTTAGTCTTCTGGTTTCTGCTCACTTCTGAAGTTTCACTGCACCCTATGATCCGGCTGCCTCGATCTGAGCACCCTAGGATCTTCCCTCTCATCCCAACATCAGGCCCTTGGCTTTCCACACACTGTCCCCTTGAATAGATTATGGTTGGTTTCTATTAAGATTGTTCCTCGCCATTTATTTCAGAAGTAAAGATACCTTGACCCCTGAACAGGAACCTTCATAGATAGCAACAAAGGCTCA s rn5.chr9 92339906 259 + 121549591 TCCTTACCAGGTTCCATTGGGACCTTA------TGGTTTCTATTCACTTCTGAGGTTCCATTGCATCCTATGATCTGGCCACATCTATCTGACCGCCCTAGGATCTTCTTCCTCCTCCCAACACCAGGCCCTTGGCTTTCCACACACTGCTCCCTTGAATAGATTGGGGCTGGTTTCTAGTAAGACTGTTCTTTGTCACTTATTTCGGAAGTGATGATACCTTGACCCATGAACAGGAAATGACATGGATACCAACAAAGGCTCA i rn5.chr9 I 463 C 0 e eriEur1.scaffold_340130 45218 3388 - 57563 I e proCap1.scaffold_31944 8453 976 + 25514 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=-558.000000 s mm10.chrUn_GL456372 3673 3 + 28664 --GAA s rn5.chr9 92340165 3 + 121549591 --GAA i rn5.chr9 C 0 C 0 s proCap1.scaffold_31944 9429 3 + 25514 ATG-- i proCap1.scaffold_31944 I 976 N 0 e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=10487.000000 s mm10.chrUn_GL456372 3676 184 + 28664 GAAAACCACAGAACTGCACAGCCAGAGCGATGCTTGAGCCCTGGCAGGGCTCAGATGAACTTAGCGTATCCTTAGTCTGTGGTCCACTGGCCCTGCTGCTAGGCCTAGAGGTAAAAGTGTCCCTCAGCTGCTCTCTTATCTTAAAGAATCCTCTCTCCCCTGGGGACGATCCTTTTGATAGTGA s rn5.chr9 92340168 178 + 121549591 CAAAACCACGGAACTGCACAGCCACGGAGACGCTTAAGTCCT------GCTCAGATGAACTTAGGGCATCCCTAAGTCCCTTTCTCCTGGCCCTGCTGCAAGGCTTAAAGGTGAAGATGTCCCTCAGCTGCTCTCTCAGCTTAAGGAATCCTCCTTCCCCCAGAGAGGAGCCTTTTGACAGTGA i rn5.chr9 C 0 C 0 e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 7895 2027 + 22953 I a score=605.000000 s mm10.chrUn_GL456372 3860 5 + 28664 CACAT s rn5.chr9 92340346 5 + 121549591 CATGT i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_28366 9922 5 + 22953 CAGAT i tarSyr1.scaffold_28366 I 2027 C 0 e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I a score=486.000000 s mm10.chrUn_GL456372 3865 3 + 28664 GAA s rn5.chr9 92340351 3 + 121549591 CAA i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 19543 2 - 58077 -AA i papHam1.scaffold15394 N 0 I 4335 s tarSyr1.scaffold_28366 9927 3 + 22953 GAG i tarSyr1.scaffold_28366 C 0 I 1088 e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I a score=129.000000 s mm10.chrUn_GL456372 3868 14 + 28664 TGTC-------ACCAATGTCA s rn5.chr9 92340354 21 + 121549591 TAGTGAGCAAGGCCAATGTCA i rn5.chr9 C 0 C 0 e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=1441.000000 s mm10.chrUn_GL456372 3882 8 + 28664 CAGTGCAG s rn5.chr9 92340375 8 + 121549591 CAGTGCAG i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 65968 8 + 176633 GAGAGCAG i micMur1.scaffold_3075 N 0 I 1141 e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=382.000000 s mm10.chrUn_GL456372 3890 4 + 28664 TGTG s rn5.chr9 92340383 4 + 121549591 TGTG i rn5.chr9 C 0 C 0 e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 16989 1566 - 53618 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=-42.000000 s mm10.chrUn_GL456372 3894 1 + 28664 C s rn5.chr9 92340387 1 + 121549591 A i rn5.chr9 C 0 C 0 s turTru2.JH490333 18555 1 - 53618 C i turTru2.JH490333 I 1566 I 33 s felCat5.chrC1 212377655 1 + 221441202 C i felCat5.chrC1 N 0 I 27 e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=100.000000 s mm10.chrUn_GL456372 3895 1 + 28664 C s rn5.chr9 92340388 1 + 121549591 C i rn5.chr9 C 0 C 0 e felCat5.chrC1 212377656 27 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 11677 1091 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 18556 33 - 53618 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=-393.000000 s mm10.chrUn_GL456372 3896 4 + 28664 TGGG s rn5.chr9 92340389 4 + 121549591 TGGG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 12768 3 + 13480 CAG- i dipOrd1.scaffold_37788 I 1091 I 130 e felCat5.chrC1 212377656 27 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 18556 33 - 53618 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=549.000000 s mm10.chrUn_GL456372 3900 24 + 28664 TGTCTCTTCT-----------------TTCACTGTCTGCTG s rn5.chr9 92340393 40 + 121549591 -GTCTCTTCTCACTATTCTCCGGTAAACTGACTCTCTGTTG i rn5.chr9 C 0 C 0 e felCat5.chrC1 212377656 27 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 12771 130 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 18556 33 - 53618 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=497.000000 s mm10.chrUn_GL456372 3924 3 + 28664 GGT s rn5.chr9 92340433 3 + 121549591 GGT i rn5.chr9 C 0 C 0 s turTru2.JH490333 18589 3 - 53618 GAA i turTru2.JH490333 I 33 I 6024 s felCat5.chrC1 212377683 3 + 221441202 GGA i felCat5.chrC1 I 27 I 44274 e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 12771 130 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=9987.000000 s mm10.chrUn_GL456372 3927 144 + 28664 TCATGTTCTCCAATCTCAAGTGGTTTTATTGCCTGGTCCTCTCACTCTCAGTCCAACCCTCAGCCCCGTGGCTGCCCCTCTTTGTGTTTCTTTATCTATCCAGTTCTGTAGTCTAGATGCCGAATGTCTCCTCaaagcttaggt s rn5.chr9 92340436 142 + 121549591 GTGTATTCTCCAATCTCAAGTGGCTTTATTGCCTGGTTCTCTTACTCTCACTCCAACCCCCAGACCTGTGGCTGACC--CCTTGTGTTCCTTTATTTACCCAGTTCTGCAGTCTAGATGCCAAATGTCCCCTCAAAACTTAGGG i rn5.chr9 C 0 C 0 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 12771 130 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=392.000000 s mm10.chrUn_GL456372 4071 10 + 28664 --tcccaggtga s rn5.chr9 92340578 10 + 121549591 --TCTCAGGTGA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 12901 12 + 13480 GCTAAAAGCTAG i dipOrd1.scaffold_37788 I 130 I 14 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=1515.000000 s mm10.chrUn_GL456372 4081 17 + 28664 cactacagggagatggg s rn5.chr9 92340588 17 + 121549591 CACTACAGGGAGACGGG i rn5.chr9 C 0 C 0 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e dipOrd1.scaffold_37788 12913 14 + 13480 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=-14.000000 s mm10.chrUn_GL456372 4098 3 + 28664 ctg s rn5.chr9 92340605 3 + 121549591 ATG i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_37788 12927 3 + 13480 ATC i dipOrd1.scaffold_37788 I 14 N 0 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=39492.000000 s mm10.chrUn_GL456372 4101 795 + 28664 atgtgaagaactggggccaagaggaggtgttaggtcattgggagcacctctagaggagattgtggggtccaagtctctcctttctccattttcagaacacacggtgaacaattttattttgtcacaca-tcctgcggtgataca--atcttgctacaggctcaaaCTGTATCACAGGTCAGAGCCCCCTaacttcttctcattgtaagttcattatcataggcattttgtgacag--atagaaatctgacaAGTGACTGTGGAGTTACCTCTGAACTTCCCCTTCCTTCTCTGTCAGGAGCAACTTACAATGATGTCACAGGTGGTTTTAAGGTCATGTGAAATGATCATATAAAATGTCATGGGACACCCACA--GTCACAAAGAGATAGACGTTGTATCCATTTCACCTCTCTcttctcctcctccttctcctcttctccttcttcttcctctcctcctcctcctccttctctctctctctctTCCCCACCCCCCCATTTTCTTTCTTTCATAGCAAGTCCCGACATTTCAGTTGCCCTACGTGCTCCCTGGAGATGGTCCCATACTTCATATTTTCAAGATGAATGTgtgtgatggcccacttctggaacaccagcacttggaaagaaggctgaggcagaaggattacattttaggccattctgtactacaacgtgagactctgtcacaaCT-------TACACCTG-------GTTCACTGAATAGCTGTATTAAAAACACCTGTGTCCTATAGAAATTCGAATCGTGGAAGCTGAGGTCAGAGTCAGCCAGGATGACGCTTCCAGCAGATT s rn5.chr9 92340608 714 + 121549591 ACTCGAAGAGCTGGGGCTGAGAGGAGGTGTTAGGTTATTGGGGACATCTCTAGAGGGGATTGTGGGATCCAATCCTCTCCTTTCTCCATTTTTAGAACACACAGTGAACAATTTTACTTGTTTATACATTCCTGCTATGATACACTATATTGCTAAAGGCTCAAAGTGTATGACAGGTCAGAGTCCCCTGactttttctcactgtaagtagattatcataggcattttgtgacagaaataaaaatctgacaAGTGATCGTGGAGTTACCTCTGAACTTCCCC-----TCTTTGTTAAATGCAGCTAACAATGATGTCACAGGTGGTTTTAAGGTCATGTGAAATGATCATACAAAATGT-GTGGGGCCCTCACACTGTCACAAAGAGATAGATATTGAATTCACGCCCCCTCCCCC-----------------------------------------------------------------------------------------------CATATTGGGTTCTGACATTTCTGCTGCCTTATGTGTTCCCTGTAGATGCTCCAATAGTTCTTATTTTCAAGATGGGTGTgtgtaatggctcacttttgttacaccagtacttggaaaaaaggctgaggtagaatgattatattttaggccaccctgggctacattttg-gactctgttccaaatgaacaGCTATTCCTGCACTAAAATTCATTGAATAGCTGCATCAGAAACATCTGTGTCCTACAGAAATTCACCTTGGGGAAACTGAGGTCAGCGTCAGTCAGGTCTACCCCTCCAGCAGCTT i rn5.chr9 C 0 C 0 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 9930 1088 + 22953 I a score=-829.000000 s mm10.chrUn_GL456372 4896 1 + 28664 -T s rn5.chr9 92341322 1 + 121549591 -T i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_28366 11018 1 + 22953 A- i tarSyr1.scaffold_28366 I 1088 I 3627 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=4154.000000 s mm10.chrUn_GL456372 4897 54 + 28664 TGTGAGCAAGCGTGGTCTATGCCTTTACACAGGGAAAGCAGGCATTGGAATGCA s rn5.chr9 92341323 54 + 121549591 TGTGAGCGAGTGTGACCTACGCCTTTACACAGGGAAAGCAGGCACTGGAGTGTA i rn5.chr9 C 0 C 0 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26001292 2459 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=1117.000000 s mm10.chrUn_GL456372 4951 9 + 28664 GAATCCACA s rn5.chr9 92341377 9 + 121549591 TGTTCCACA i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26003751 9 + 30916457 GGGCCCACA i myoLuc2.GL429770 I 2459 I 16960 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=2888.000000 s mm10.chrUn_GL456372 4960 36 + 28664 CTGGAAACAAACCCAGGCTTTTACTGTAGCACCACT s rn5.chr9 92341386 36 + 121549591 CTGGCAACAAACCCAGGCTTTTACTGTGGCAACACT i rn5.chr9 C 0 C 0 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=931.000000 s mm10.chrUn_GL456372 4996 5 + 28664 GCACA s rn5.chr9 92341422 5 + 121549591 GTGCA i rn5.chr9 C 0 C 0 s pteVam1.scaffold_7755 77015 5 - 81278 GTACA i pteVam1.scaffold_7755 N 0 I 5 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=191.000000 s mm10.chrUn_GL456372 5001 2 + 28664 TG s rn5.chr9 92341427 2 + 121549591 TG i rn5.chr9 C 0 C 0 e pteVam1.scaffold_7755 77020 5 - 81278 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=273.000000 s mm10.chrUn_GL456372 5003 1 + 28664 T s rn5.chr9 92341429 1 + 121549591 T i rn5.chr9 C 0 C 0 s pteVam1.scaffold_7755 77025 1 - 81278 T i pteVam1.scaffold_7755 I 5 T 59890 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=-97.000000 s mm10.chrUn_GL456372 5004 22 + 28664 GACAAGGATCGGAGAAACCACT s rn5.chr9 92341430 22 + 121549591 TGAAAGGATTGGAGAAACCACA i rn5.chr9 C 0 C 0 s ochPri2.scaffold_3455 146056 16 + 305382 GACACGGCTCAG-----CTCC- i ochPri2.scaffold_3455 N 0 N 0 e pteVam1.scaffold_7755 77026 59890 - 81278 T e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=19803.000000 s mm10.chrUn_GL456372 5026 254 + 28664 TTACCGTTTCTGAAGCTTCTGAAAATTGCCACCAGGCTGGGGTATTCCCGGAGGTTGACCTTGCTGAACAAAGTCAGCAGCACTGATGGGTGGAAAGCCTGCTCCAGACTGGTGAGAATATTGTGCACCACTTTGGACAGAGGGACCAGATTTAGACAGGCTTCCAGAGATTCCTTCAAAGAGTGGAGCAGAGGGTTAGTTTGAATGAGTAGTCACCGAGCGGAGAGCTCTCTATCTGTGGTTTTCTATATTGT s rn5.chr9 92341452 254 + 121549591 TTACCATTTCTGAAGCTTCTACAAATTGCCCCCAGACTGGGGTATTCCCGTAGGTTGACTTTGCTGAACAATATCAGCAGCATCGATGGGTCGAAAGTCTGCTCCAGACTGGTGAGAATATTGTGCACCACTTTGGATAGAGGGACCAGATTTTGACAGGCTTCCAGAGATTCCTTCAAAGAGTGGATCAGAGGGTTAGTTTGAATGATTACTCATTGAGCTGAGAGCTCTACATTTGTGGTTTTCTGTATCAT i rn5.chr9 C 0 C 0 e pteVam1.scaffold_7755 77026 59890 - 81278 T e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e eriEur1.scaffold_340130 45218 3388 - 57563 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=91.000000 s mm10.chrUn_GL456372 5280 1 + 28664 A s eriEur1.scaffold_340130 48606 1 - 57563 a i eriEur1.scaffold_340130 I 3388 N 0 e pteVam1.scaffold_7755 77026 59890 - 81278 T e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e rn5.chr9 92341706 0 + 121549591 C e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=1219.000000 s mm10.chrUn_GL456372 5281 13 + 28664 AAGAAAGCTACTT s rn5.chr9 92341706 13 + 121549591 AAGAAAGCTACTT i rn5.chr9 C 0 C 0 e pteVam1.scaffold_7755 77026 59890 - 81278 T e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 65976 1141 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=-647.000000 s mm10.chrUn_GL456372 5294 2 + 28664 -TT s rn5.chr9 92341719 1 + 121549591 -T- i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 67117 2 + 176633 CT- i micMur1.scaffold_3075 I 1141 I 4656 e pteVam1.scaffold_7755 77026 59890 - 81278 T e felCat5.chrC1 212377686 44274 + 221441202 I e papHam1.scaffold15394 19545 4335 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=9533.000000 s mm10.chrUn_GL456372 5296 190 + 28664 Gggggctgctgaggatggctaagtgggtgcaggcgttggccgtcaagcttgatc---tgagtctgatccc----tgtgatctggagggtggaaggagagcacagattctacagggtgtccttcagcatccacctgcacaccatggcacatgcgcacCTCACTCCCAAATAAATA-----CAGTACTTAAAAAATATGTAAAa s rn5.chr9 92341720 199 + 121549591 -ggggctgctgaggatggctgagtgggtaaaagtgttggccctcaagtctgatgacacgggtttgaaccctaggtaggatccata-ggtggaaggagagaacagattctacaagctgcccttcaac-ttcacttgcacaccacagcagatgtgtgcctcacacccaAATAAATAAATTGTAGTACTTTAAAATAATATAAAa i rn5.chr9 C 0 I 3066 e pteVam1.scaffold_7755 77026 59890 - 81278 T e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=0.000000 s mm10.chrUn_GL456372 5486 410 + 28664 gtcaggcttggtgacacacgcctttaattgcagcattcaggagacaggcagtcagattgctaatgttttctagttgagggcatcctgatctacaaagtgagttccaggacagccagggctgcacagagaaatcttgtctcaaacagaacagaaCAAAACCCCTAAATTTAAGAAATCTTCttttttaatttaagaaaaattttagtataaaatataGAGATAAATCTTTAGGATAGAAGTCATTGAAAGAGAGAACTGCCTGCAAAATTCTTCCAGTGTCTGCTATTCCTGGTTAGCTAGTCCTTGGGTGCCCAGATGGATCCGGTGATGGGACAGGTGATACCCTCCCCAGGTAGAGCCCTGTTCAGGTGGTGTTGCTGTCCAGGTGGGACCCTGCCCAGGTGAGTCCC e pteVam1.scaffold_7755 77026 59890 - 81278 T e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e rn5.chr9 92341919 3066 + 121549591 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=2773.000000 s mm10.chrUn_GL456372 5896 33 + 28664 TGCGGAGCTAGAAAGCTGGTAATATTTAGACAC s rn5.chr9 92344985 33 + 121549591 TGTGGAGCTAGAAACCTGGTAATATTTAGACAC i rn5.chr9 I 3066 C 0 e pteVam1.scaffold_7755 77026 59890 - 81278 T e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 19545 4335 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 11019 3627 + 22953 I a score=910.000000 s mm10.chrUn_GL456372 5929 1 + 28664 T s rn5.chr9 92345018 1 + 121549591 T i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 23880 1 - 58077 T i papHam1.scaffold15394 I 4335 I 140 s tarSyr1.scaffold_28366 14646 1 + 22953 T i tarSyr1.scaffold_28366 I 3627 I 214 s pteVam1.scaffold_24822 5184 1 + 7207 T i pteVam1.scaffold_24822 n 59890 I 721 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=9903.000000 s mm10.chrUn_GL456372 5930 139 + 28664 GAAAAATCACTCACAACACTTTGACGCAAGCAGACAACACATGAATAAAATCAGGAAGGATATGAAAAATAGGATTGGTCAAAGTCAACGCTTGGTTTTATGACCCCATTTCATTCTTCAGGATGGACCTGGGTCTTCT s rn5.chr9 92345019 137 + 121549591 GAAGAATCACTCACAGCATTTTGAGGTAAGCAGATAACACA--AATAGAATCAGGAAGGACATGAAAATTAGGATTGGTCAAAGTCACCACTTGGTTTTATGACCCCATTTCATTCTTTGGGTCAGACCTGTGTCTTCT i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 23881 140 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 14647 214 + 22953 I a score=29.000000 s mm10.chrUn_GL456372 6069 1 + 28664 T s rn5.chr9 92345156 1 + 121549591 T i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 24021 1 - 58077 C i papHam1.scaffold15394 I 140 I 2087 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 14647 214 + 22953 I a score=4599.000000 s mm10.chrUn_GL456372 6070 61 + 28664 ATGGAATGTTTCTAAAAATCGACTGCTTCCGGATCATGAGAAAATAACCAGCGAGTTATAA s rn5.chr9 92345157 61 + 121549591 ATGGGCTGTTTATAAAAATCGACTGCTTCCAGACCATGAGAAAATAACCAGTCAGTTATAA i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 14647 214 + 22953 I a score=300.000000 s mm10.chrUn_GL456372 6131 1 + 28664 C s rn5.chr9 92345218 1 + 121549591 C i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_28366 14861 1 + 22953 C i tarSyr1.scaffold_28366 I 214 I 17 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=772.000000 s mm10.chrUn_GL456372 6132 13 + 28664 ----AGAAAACTTCCAG s rn5.chr9 92345219 17 + 121549591 AGGAAGAGAACTTCCTG i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 14862 17 + 22953 I a score=340.000000 s mm10.chrUn_GL456372 6145 3 + 28664 GTA s rn5.chr9 92345236 3 + 121549591 GTG i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_28366 14879 3 + 22953 ATA i tarSyr1.scaffold_28366 I 17 I 384 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=11146.000000 s mm10.chrUn_GL456372 6148 205 + 28664 GCAAACTGTTGTAAGAAGGCAGGCCCTAGTAAACCTTTTGATCACAGAGGGGGCACTTTTGTTGTTGATTGgcagt--tgtggggatggagtccaggacctgtgcatcttaggcaagtgccctaacgctgagctgcatcccagcTAGCAACACAGTTCTGTTTATTTGTTTATTTGTTTG-CTAATCTTAAACACAAAGAAG-----GCAAGG s rn5.chr9 92345239 207 + 121549591 ACAAACTGTTGTAAGAAGGCAAGCCCTAGTAAATCTTGCAATCACGGAGGGG------TTGGGAGGGATTGGCAGTGGGGGggggatggagcccaggacctgtgcatcataggcaagtgccctattgctgagctacatcccAGCTAAGAGTAAAGTCCTGCTTGTTTGTTTCTGTGTTTGTTTTGTCTTAAACACAAAGAAGAAGAAGACAAG i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 14882 384 + 22953 I a score=2740.000000 s mm10.chrUn_GL456372 6353 28 + 28664 GTCCCCCTTTCCTCTTTTTTAAAACAGA s rn5.chr9 92345446 27 + 121549591 GGCCCCCTTTCCTCCTTTTT-AAACAGA i rn5.chr9 C 0 C 0 s tupBel1.scaffold_111017.1-172466 120021 28 + 172466 GTCTAACTTCACTTTTGTGTCAAACATA i tupBel1.scaffold_111017.1-172466 N 0 I 210 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 14882 384 + 22953 I a score=11200.000000 s mm10.chrUn_GL456372 6381 244 + 28664 ATATTAAATATTAAAGAGTATTTCCAAAGAGTATTTCCAGGAATTTAATCCCAGCATCACATTGAGTAGACTTGTCCCTCCCTTTCTTCTTCTTTCCCAATCTCTTCAACTTAGCAAAAAAAAAATGTTGAGGAGAAAACAAAAAGAAGCCGACTTCACAATAGGACTGTAGAGCACGGAG--ATGTCAAGGATCATCCAGTCCTGAGGGAATCCTGGCAGACTGGG----GACAGGTGGGAGGGAAAGC s rn5.chr9 92345473 225 + 121549591 ATATTA---------------CTGTAATATATATTTCCAGGAATTTAATTTCAGCATCAAATTAAGCAGTCTGGTCCCT-------TTCTTCTTTCCTAGTCCCTTAAACTTAGCAAGAAAAA---CTTGAGGAGAAAACAAAAAGAAGACAATTTCACAGGGGAACTGTGGAACGGGGAGGTGTGTCATGGACCGTTCAGTCCTGAGGAAATTCAGGCAGACAGGGGACAGACAGGTGGGTGAGAAAGC i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tupBel1.scaffold_111017.1-172466 120049 210 + 172466 I e tarSyr1.scaffold_28366 14882 384 + 22953 I a score=-159.000000 s mm10.chrUn_GL456372 6625 12 + 28664 --------------------TGTTGAGGATAC s rn5.chr9 92345698 12 + 121549591 --------------------TGTTGAGGATAT i rn5.chr9 C 0 C 0 s tupBel1.scaffold_111017.1-172466 120259 32 + 172466 CACCCTCCACCACATGCAAAGGGAGAGCAGAC i tupBel1.scaffold_111017.1-172466 I 210 I 24 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 14882 384 + 22953 I a score=-389.000000 s mm10.chrUn_GL456372 6637 24 + 28664 TTGTGggggaggggaggggagggg s rn5.chr9 92345710 11 + 121549591 GCATGGT-------------GGGG i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tupBel1.scaffold_111017.1-172466 120291 24 + 172466 I e tarSyr1.scaffold_28366 14882 384 + 22953 I a score=29.000000 s mm10.chrUn_GL456372 6661 1 + 28664 a s rn5.chr9 92345721 1 + 121549591 G i rn5.chr9 C 0 C 0 s tupBel1.scaffold_111017.1-172466 120315 1 + 172466 A i tupBel1.scaffold_111017.1-172466 I 24 C 0 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 14882 384 + 22953 I a score=548.000000 s mm10.chrUn_GL456372 6662 2 + 28664 gg s rn5.chr9 92345722 2 + 121549591 GG i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_28366 15266 1 + 22953 -G i tarSyr1.scaffold_28366 I 384 I 103 s tupBel1.scaffold_111017.1-172466 120316 2 + 172466 AG i tupBel1.scaffold_111017.1-172466 C 0 N 0 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=3167.000000 s mm10.chrUn_GL456372 6664 51 + 28664 CAGCAAGAACATGTGCTCTGGGTTCTGCTTAGGATGGC---------AGCAGCACTCAGA s rn5.chr9 92345724 60 + 121549591 CAGCATGAACATGTGCTCTGGGCGCCACTTAGGATGACTTGTTATAGAGCAGCACTCAGG i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 5185 721 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 15267 103 + 22953 I a score=338.000000 s mm10.chrUn_GL456372 6715 2 + 28664 CC s rn5.chr9 92345784 2 + 121549591 CC i rn5.chr9 C 0 C 0 s pteVam1.scaffold_24822 5906 2 + 7207 TC i pteVam1.scaffold_24822 I 721 C 0 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 67119 4656 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 15267 103 + 22953 I a score=485.000000 s mm10.chrUn_GL456372 6717 2 + 28664 TA s rn5.chr9 92345786 2 + 121549591 TA i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 71775 1 + 176633 -A i micMur1.scaffold_3075 I 4656 I 35799 s pteVam1.scaffold_24822 5908 2 + 7207 CA i pteVam1.scaffold_24822 C 0 C 0 e felCat5.chrC1 212377686 44274 + 221441202 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 15267 103 + 22953 I a score=38.000000 s mm10.chrUn_GL456372 6719 1 + 28664 C s rn5.chr9 92345788 1 + 121549591 C i rn5.chr9 C 0 C 0 s pteVam1.scaffold_24822 5910 1 + 7207 T i pteVam1.scaffold_24822 C 0 C 0 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I e tarSyr1.scaffold_28366 15267 103 + 22953 I a score=-2331.000000 s mm10.chrUn_GL456372 6720 2 + 28664 --AC s rn5.chr9 92345789 1 + 121549591 --A- i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_28366 15370 1 + 22953 --G- i tarSyr1.scaffold_28366 I 103 N 0 s pteVam1.scaffold_24822 5911 2 + 7207 AT-- i pteVam1.scaffold_24822 C 0 C 0 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=564.000000 s mm10.chrUn_GL456372 6722 6 + 28664 TGCTGT s rn5.chr9 92345790 4 + 121549591 --CTGT i rn5.chr9 C 0 C 0 s pteVam1.scaffold_24822 5913 6 + 7207 TCCTTT i pteVam1.scaffold_24822 C 0 I 152 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=9527.000000 s mm10.chrUn_GL456372 6728 147 + 28664 GGCAACTTTGCCATTTGCCGCCTGCCACAGTTTCCGAAGATGGAAGTCAGATCTGCAGAGGTTAAGTACCTGTGCCAAGGACACCAATCTACAGTAGAGTGTGTCTGTCTCTAATATTTTGTTTCTCACTGTGCAAGATATGGTATC s rn5.chr9 92345794 140 + 121549591 GACAGCTTTGTCATTTGTCACCTGCCGCAGTTTCT-------GAAGTCAGACCAACAGAGGTTAAGTACCTAGCCCTAGGACACCAATCTACAGTAGAGTGTGTCTGTCTCTGATACTTTGTTTTTCCCTGTGCAAGATACTGTACC i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 5919 152 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=602.000000 s mm10.chrUn_GL456372 6875 3 + 28664 TCA s rn5.chr9 92345934 3 + 121549591 TCA i rn5.chr9 C 0 C 0 s pteVam1.scaffold_24822 6071 3 + 7207 cca i pteVam1.scaffold_24822 I 152 I 504 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=34563.000000 s mm10.chrUn_GL456372 6878 552 + 28664 agcctgaggaaatggtgcaagcctttaatgccagcagaggaggcaaagg---------------cagttggaggccatcctgatatatat----agttccaggacactcagggctacaca--gaaattctgtcttgaagaGGGGAAAAAAA-----ATCCTGTGTCTCAGCTGCCTGCATGCCTGTTTttattatgttaagggccttacaaataaattagggaa----agacaaacacccattaggaaagacaaaGCCCCAAA------CAATCAATAAAATGAGCATCATATACAATGAATGCATAATTAAGCAGGGAAAAGGTAGACAAGT-CGAAGGACTTGACAGTGCATAGTACTATCAAAGTGACCAGGAGACGAAACAATAGCCACAGTCCCTGATAGGGTAGAAGTGAAAAGCATTTCAAGTGTTCTGTGACTTATTTGG-AATCAGGGTCACCAGCTGTAAAAATTACATTTCCCTTGAATTTTCACGCACAGTAATGTATTTCAGTGAAATGACCATGGACTAAAACCAAAACAAAGCAAATATAC--AAAAACCATCCATACCCCCGCTAGAGAGAAGTAA s rn5.chr9 92345937 584 + 121549591 agcctgaggaaatggtacaagcctttaatgctaaccctggaggcaaaggcaggcagatctctgccagttccaggccatcctggtatgtacagtaagttccaggacactcagggatacacagtgaaacccagtcctcaagaggggaaaaaaaaaaAGATCCTGTGTCTCAGATGCCTGCATTCAGGTTTTTATTATGTTAAGGGCCTTACAAATAAATTAGGAAAAGACAGACAAACATCCATTAGGAAAGACAAAGCCCCAAACACAAGCAAACAATAAAATGAGCATCAT-TACAATGAATGCATAATTAAGCTGGGAAAAGTCAGACAAGTGGGAAGGCCTTGATAGCGCATAT-----TCAAAGTGACCAGGAAAGAAAACAACAGCCACCCTCCCCAGTAGGGTAGAAATGGAAAGCATTTCAAGTGTTCTGTGGCTCATTTGGTAATCAGGGTCGCCAGCAGTAAAAATTAAA-TTCCCTTGAATCTTCATGCGCAGTAATGTATTTCAGTGAAATGACCATGGATTAAAAACAAAACAAAACAAACATACAAAAAAAAAATCCATA-GCGTGCTAGAGAGAAGTAT i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 6074 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=-782.000000 s mm10.chrUn_GL456372 7430 2 + 28664 GG- s rn5.chr9 92346521 2 + 121549591 GG- i rn5.chr9 C 0 C 0 s pteVam1.scaffold_24822 6578 2 + 7207 -AT i pteVam1.scaffold_24822 I 504 n 504 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=-31.000000 s mm10.chrUn_GL456372 7432 1 + 28664 G s rn5.chr9 92346523 1 + 121549591 A i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 18592 6024 - 53618 I a score=-241.000000 s mm10.chrUn_GL456372 7433 2 + 28664 CA s rn5.chr9 92346524 2 + 121549591 GG i rn5.chr9 C 0 C 0 s turTru2.JH490333 24616 2 - 53618 TA i turTru2.JH490333 I 6024 I 11168 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I a score=31843.000000 s mm10.chrUn_GL456372 7435 584 + 28664 CCCCTTACTTTCTCTTTCCCAATAGCTCCATAATTAGGCAAGTGTTGGAAGATGATAACGGCACCGCCCACCGTGGACACTTGCAAGGTCCAACCTCGGGAATAGGCACTGGACACTGTCCCCAAATTCT----GTTTCAGAAAAAGAGTTGTGTGTATAAGCCCTCACTGccctcccctccccctcccatcccctcctctcccctctccttcccttccTCCCTCTTATCCACCTCCACTCCAGGGTCCGAGCCAGGATCCGGAGCCATGCTCGAGTCTCTGGACAAGGTTACTTAGCAAAGAGAGAACCTGGGGAGTCTAGGGTACAGCAGACAAAAGCTGACCCCAAGAATCAGGAATCTAGTTGCACAGCCCA-----AGAACGCACCTGGATGCTGGGGGCTGCCACGGGTTCTCCCGAGTTCTCCCAGGTCACTGCCTGGATTAGTTAAGGGGTTCCTGGATCCTTCCTGGAAAAGCCTGACAGCCCAGTCTGGACCTGAAGTTATGCTGCCTTGGAAGTCCCGCGGGGAGTCAGGCTTCAAGAAAAGAAAAAGGAAAGTGATCTCAGCACACTGAGCAGGAAGCCAG s rn5.chr9 92346526 521 + 121549591 CTTCTCATTTTCTCTTTCCCAATAGCTTCATAATTAGGCAAATGTGGGAGGATGATGACGACACTGCCCACCGTGGGCAAATGCAAGGTCCAACCTGGGGAACATGCACTGGACACTGTCCCCAAAGCCTCTAACTTTCAGAAAAAGAGTTGGGTGTAT-GGACCTCACTGCCCTCCCCTC------------------------------------CCTTCCTCTTATCCACATCCACTCCAGGG-------------------------TCGAGTCTCTGGAAAGGATTACTTAACAAAGAGAGAGCCTGGGGACTCTCGGGTACAGCAGATAAAAGCTGACCCCAAGAATCTGGAATCTAGCTGCAGAGCCCAAGAGCAGAACGCACCTGGATGCCGGGTTGCCAACGGGGATCTCCCAGGTTCTCCCAGGTCACT-CCAGGATTAATTAAGAGGTTCCTGGATCCTGCCTGGAAAAGCCAGCCAGCCTAGTCTGGACCCGAAGT--------CCTAGAAGCACCGAGAGGAGTCAAGTTTCAAGAAAAG-AAAACGAAAGTGATCTCAGCACACAGAACAGGAAGCCGG i rn5.chr9 C 0 I 2994 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 24618 11168 - 53618 I a score=0.000000 s mm10.chrUn_GL456372 8019 1038 + 28664 CTGGCTGCACCAATTCCGCACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 24618 11168 - 53618 I e rn5.chr9 92347047 2994 + 121549591 I a score=78380.000000 s mm10.chrUn_GL456372 9057 1282 + 28664 tctctctctctctttctctctctctctctctctcACACACACACACACACACGATAggagagatggcccaggtttaagcactcgtattgtcctagtagtgggcatgggttgggtccccagcacctattctagggcttccaacttcctctcatgccaaatccagatcagacagccttttctgccttccatggacactgtacttgcgtgcaggaagcacactgagacagactcatacatacataattcaaaataaaaatagaAAAGATGAGAGGAAGGTGTGATG-----------CCCCCAACAGGGACTCAGTCAGGGCTACTTCTGCTCCTGCAGATGTCCTAAGAAAGCACCATTTCTCCTGTGACATTTGGTCAAGTCCACTAGTGATACCAGCAGTGTGCTGTGTCTTTTGGGAATAAATAGGGTGGTTAATCACTGGCTCAGTGCCTTTCATATAAGCAGGTGGAGGT-ATCTGTCTCT--------GAGTGTTTGCAGTTTCTGTCTTTGAAGACATTTTTGTTGTGGTTATCAATCTGACAGGGGTAGGGATGGCCGCATTAATCTTTGCTACCCTTGCACTGTCTGTGGAATTCATAGCGTGTGT----CTGTCTTACCTTCGCTAGCCTGAGTAGAGATTTAATAATGTATTGATCTTTCCAAAGGA-----------TGTGAGCATAATGCCCACTTCTTTTAATTCTATGGATTATTACTTTAATTTCACTGAATCTTTGTCTTCATTTGGATGAAATCATTCCTCATAAGATTGTTCATTTATGCCTCTCTTAGCTTCCGACACATACAAAGCTGTATGTTTCCCATTAGCCACTGCCTTTGCTGTGTCTCAGATTTAA--TAATTTTTAGACTTCAGGGCTTTTTTAGTGTAGGAGAAAGGGTCACACTTTTGCTTGTCTTACCCCATG----TAAAAAAAATTACATTCATTTATTTATtgtatgtgtgcaggtgccacaatgtgtcttttgagatcagaggacaactttggggattcggttgtctcctactaccatgtagttagttcttaggggagcaatctcatgtccgcagacttgggggcaaggcctgtatcagctgagccat--cctcccagacccTCTTTTATTTACATTAGTTACAGTTTTTAAACGTACTCTGTTTTATAATTGTGCTATTATTAAAT--------------------------------TATCCACATTTTGACTCATTATGGACACAGAGAAA-------TATGTTTGTAAATATTTTCATTttactctttttcttttggctttcctttctttttatgcccttttggttttagtaaaaca-ttttatgatt s rn5.chr9 92350041 1339 + 121549591 tctctctctctctctctctctctctctctctctctTCCCC-CGCATGCGCATGAGAggagagatggcccaggtttaagcactcatactgctttagtagtagac---------gtccccagcacccatcccagg-cttctaactgcctctgatgcccaactccgatcagacaccctcttctgccttccataggcgctgtatttacatgcaggaaacacaccgagacagacacatatatacataattcaaaataaaaacaaaAAAGATGAGACGAAGGTGT-ATGTAGCTAATTGCCCTCCAACAGGGACTCTCTTGGGGCAACTTCTGGTCCTGCAGACATCTTAAGAAAGCATCACTTCTCC-GTGacgtttggtcaaggccactagtgataccaacagcatgctgtgtcttttgggagtgagtggggtggttcattactggctcaatgtctttcttataagcctgttgaagtgatctgtctctcagagtgtgagtgtgtgctgtttctgtctttgaagacatttttgttgtggttatcaatccgacaggtgtaggaatggctgcatcagtctttactatcccttcactgtctgtgggattcatagtgtgtgtgtgtctgtctttccttcgtcagtctgactagagatttaataacgcattgatctttccaaaggagtagtttgtggtgtgagcagaacactcacttcttttaatcttatagatttctactttaattCCACTGAATCTTTGTTTTCATTGGGATGAAATTGCTCCTCATAAGACTG--CATTTATGCCTCTCTTACCTTCTGACATATACAAAGCTATGTGTTTTCCCCTAGCCACTGCCTTTGCTGTGTCTCAGATTTAATTTATGTTTTAGACTTCTGTGCTTTTTCAGTGTAGGAGCAAGAGTCGCACTTTTGCCTGTCTTCCCCCATAGGttttttaaaaatta----aatttatttattgtacgtgtacaagtgccacagtgtgtctgttgaggtcagggaacaaccttagctggctgattctctccttcaaccacggaggt-----cttagggagcaagctcgtgtccgcagactcggtggcagggcctgtatcagctgagccatccccccCCAGCGCCTCTTCTACTTATACTAGTTGCAGTTTTCAAACATA--CTGTTTTATTATCGTGCtattattaaatataatatataattaaatttCCAAATAAATGGAAAATCACATTTCCACTGATAATGGACACAGAGAAACACCTATCATGTTTGTAAATATTTTCATTTCACTCTTTTTCTTTTGACTTTCCTTTCTTTTTGTGCTCCTTTGGTTTTAGTAAAACATTTTTATGATT i rn5.chr9 I 2994 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 24618 11168 - 53618 I a score=0.000000 s mm10.chrUn_GL456372 10339 120 + 28664 ctttcttccttccttccttccttccttccttcctttctttctttctttctttctttctttctttctttctttctttcttcctctctctctctctctctctctctctctctctctctcttg e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 24618 11168 - 53618 I e rn5.chr9 92351380 0 + 121549591 C a score=9680.000000 s mm10.chrUn_GL456372 10459 154 + 28664 ctttctttcttGAATTCCTTTACCTATTTTT-------TTGTTGTCTCATTT----TTTCTTTTTTGCAGTACTGGGGATCAATTCTGGGGATTCTCTTGAGAATGATTTTTGGAGAAACTTTCATATCT--TGTCTCTGTTTTTTCTAAACAGTGTGTGAGCATGT s rn5.chr9 92351380 167 + 121549591 CTTTTTCTCAGGAACTCCTTTATCAATTGTTATTATTATTTTTGTTTCATTTCGTTTTTCTTTTTTGCAGTACTGGGGATTGATTCTGGGGATCCTCTTGAGAATGGATTTTGGGGAAACTTTCATATCTTATGTCTCTGTTTTTTCTAAACtgtgtgtgtgtgtgt i rn5.chr9 C 0 I 996 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 24618 11168 - 53618 I a score=4972.000000 s mm10.chrUn_GL456372 10613 75 + 28664 TCGCTGCTTATTACTTCGTGGCATTTG-TAGTTTAGTTTTGACACCTTGGCACTTTTGTATTTCTGACTAATTTGC s rn5.chr9 92352543 76 + 121549591 TCACTGCTCACTGTCTTGTGGCACTGGGTAGTTTAGTTTTGACACCTTGGTACTTTTGTATTTCTGATTAATTGGC i rn5.chr9 I 996 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 24618 11168 - 53618 I a score=-1860.000000 s mm10.chrUn_GL456372 10688 21 + 28664 TGCATT---------------TTCTACTTGGAT-----------------CAG----------- s rn5.chr9 92352619 21 + 121549591 CGCATC---------------TTCTAGCTGGGT-----------------CAG----------- i rn5.chr9 C 0 C 0 s turTru2.JH490333 35786 64 - 53618 TATATTGGGTTGGCCAAAAAATTTCATTTGGGTTTTTCCATGAGATGTTATAGAAAAACCCGAA i turTru2.JH490333 I 11168 I 5747 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I a score=58454.000000 s mm10.chrUn_GL456372 10709 999 + 28664 TGCATCACATGTGAAACTGCAGTATTTGAATTTACCGTCTGTGAAATAATTTAGTTCCAACTCAGATTTTatggggagttcatttaggat--------tccacatgaaaccagggtgtagtggtgtgtg-tttttaactccagaatttgggaaatatagacagttggatccccagagatgactggccagctaatctggctgaactaatgatatccgggttcagtgagagaccccatctc-aaaacataaggtggagagcaactggactccttgcccaggcatatgccaggcacatacacacgagcaagcacaTATACATAGACAGCCTCCTTAAGtttaaaataaaaattattgtatatttttatatGTTACTACATATAAATTTTAGGTTCTTTAAAAAAAAAGACCCTCTCAAGATTTTTTTGGTAACAGATAACTTTGATATTCTTTGTGTTTGTTTGTtgtgtagtcttgactagtctggaacttgctatatagaccaggctggcgttgaattcatggagaacctcctgcctcctgcctctgcctccgaagagctgtgattaaaggtgtgcataaccacaccTcttttaaaagaattatggagaaccccaaaagc------ttggtgttaaatttaatgagatttaccattaattataagttacagcttcaggcatttagaatatttatccattaaaagtagtaccaaagagttcatcattatcacaagtg-tgcatcctaatgaaaaataacaagaatttctaaaataaaattaaaggggaagatacaatcttgctttaccttctcacaaatgtccttactttcctgcttggtcaaagtcacaga-tgccctgtttatccctgagttcagtctgctgcgatgccacagcccacgggcacctgtgaatatcacccaacatttttgggcagaggaaagagaaaaggggcagatggtatttcaggattgttctgagaatagtttgttcttgttggcatctgaaagagtcttgagc s rn5.chr9 92352640 949 + 121549591 AATGTCAAATATGAAGCTGCAGTATTTGGATTTACCATCTGTGAAGTAATTTAGTTCCAACTCAGGTGTTatggggagctcagttcagatccctagaacccacatgaaacctggatgtggtggtgtgtgctttttaacttcagaattaggg-ggtggagacagttgggtccctggagatga-------------ctggctgaattaatgatattggagttcagtgagagaccttgtctcaaaaaaataaggtggagaacaactggactccttgcacagacatactccaggtacatagacatgagca--cacacatacataGACAACCTCCTTAAGTTTAAGATAAAAATTATTGTATAGTTTTGT---------CATATTA----------------------------TGACAAGA-TTTTTTGGTATCAGATGACTTGGATATGCTTTGTGTTTGTttattgtgtactcctgactagcctggaactcactatatagaccaggctggcctagaattcatggagatcctcctg---cctgtctctgcctcagacatgctatgattaACA-----------Cacccctttttcttaaaaattatggagaaccctaaaagctatcttttggtgttcaatttaatgagatttaccattaattataaattaaagcttcagacatttagaatattcatcccttaaaaatagcagccacaaattcatcaccatcacgagtgatgcaacctaacagaaaataacaatattttctaaaataaaattaaagggaaagatataatcttgctttaccttctcgcaaatgtccttactctcctgcttggtcaaagtcccagactgtcctgtttacctcttcgttcagtctgcagtgatgccacagcccatgggcatctgcgaatcccacgcaacactcttgggaggaggaaagggagaaagggcaagtggtatttcaggatggttctgagaatggtgtgttcgcgttggcatctgaaagagtcttgagc i rn5.chr9 C 0 I 6 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=14305.000000 s mm10.chrUn_GL456372 11708 226 + 28664 aggagtcgtcaggctataccctgagaGGCACCATTCTCAATTGCTTAGCATGTAGGTATTGGCATTTTAAGTGCTTAAAAAAAAAGACACATCTTCAGTGGCAGCAGTGAGGGGATGTGCTGATGtggatgggagaaatctcaccagactccattcctagatgaagagccata-gctattaatggctgttaacaaagagaaaatcaACCAATATTCTCCAGGAATGA s rn5.chr9 92353595 225 + 121549591 ggggttcctcagactacacctcgagagtcATCATTCTCAGTTATTCAGCATGCAGGTATTGGCATTTTAAGTGCTT-AAAAAAGGGATGTGTCTTCAGTggcagca-ccaggcgatgtgctggtgtggatgggagaaatctcacaaggctccacccctagatgaagagctgtaggcaataaatggctgttaagaaagagaaaatgcaccagtattctccaggaatga i rn5.chr9 I 6 T 7263 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=0.000000 s mm10.chrUn_GL456372 11934 100 + 28664 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e rn5.chr9 92353820 7263 + 121549591 T a score=7163.000000 s mm10.chrUn_GL456372 12034 101 + 28664 AATTAGGCAAGTGTTGGAAGATGATAACGGCACCGCCCACCGTGGACACTTGCAAGGTCCAACCTCGGGAATAGGCACTGGACACTGTCCCCAAATTCTGT s rn5.chr9 92346557 101 + 121549591 AATTAGGCAAATGTGGGAGGATGATGACGACACTGCCCACCGTGGGCAAATGCAAGGTCCAACCTGGGGAACATGCACTGGACACTGTCCCCAAAGCCTCT i rn5.chr9 T 7263 I 17 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=0.000000 s mm10.chrUn_GL456372 12135 12 + 28664 TTCAGAAAAAGA e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e rn5.chr9 92346658 17 + 121549591 I a score=10049.000000 s mm10.chrUn_GL456372 12147 226 + 28664 TTGTGTGTATAAGCCCTCACTGccctcccctccccttccctgccctcctctcccctctccttcccttccTCCCTCTTATCCACCTCCACTCCAGGGTCCGAGCCAGGATCCGGAGCCATGCTCGAGTCTCTGGACAAGGTTACTTAGCAAAGAGAGAACCTGGGGAGTCTAGGGTACAGCAGACAAAAGCTGACCCCAAGAATCAGGAATCTAGTTGCACAGCCCA s rn5.chr9 92346675 165 + 121549591 TTGGGTGTATG-GACCTCACTGCCCTCCCCTCCCTT-----------------------------------CCTCTTATCCACATCCACTCCAGGGTC-------------------------GAGTCTCTGGAAAGGATTACTTAACAAAGAGAGAGCCTGGGGACTCTCGGGTACAGCAGATAAAAGCTGACCCCAAGAATCTGGAATCTAGCTGCAGAGCCCA i rn5.chr9 I 17 I 63 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=0.000000 s mm10.chrUn_GL456372 12373 59 + 28664 AGAACGCACCTGGATGCTGGGGGCTGCCACGGGTTCTCCCGAGTTCTCCCAGGTCACTG e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e rn5.chr9 92346840 63 + 121549591 I a score=5159.000000 s mm10.chrUn_GL456372 12432 68 + 28664 CCTGGATTAGTTAAGGGGTTCCTGGATCCTTCCTGGAAAAGCCTGACAGCCCAGTCTGGACCTGAAGT s rn5.chr9 92346903 68 + 121549591 CCAGGATTAATTAAGAGGTTCCTGGATCCTGCCTGGAAAAGCCAGCCAGCCTAGTCTGGACCCGAAGT i rn5.chr9 I 63 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=0.000000 s mm10.chrUn_GL456372 12500 8 + 28664 TATGCTGC e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e rn5.chr9 92346971 0 + 121549591 C a score=5569.000000 s mm10.chrUn_GL456372 12508 111 + 28664 CTTGGAAGTCCCGCGGGGAGTCAGGCTTCAAGAAAAGAAAAAGGAAAGTGATCTCAGCACACTGAGCAGGAAGCCAGCTGGCTGCACCAATTCCGCACCCC-------ACTCCTCCGC s rn5.chr9 92346971 113 + 121549591 CCTAGAAGCACCGAGAGGAGTCAAGTTTCAAGAAAAG-AAAACGAAAGTGATCTCAGCACACAGAACAGGAAGCC----GGACACGCCAATCCCGCCCTCCACCCCCAACCCCTCCAC i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 24022 2087 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=-820.000000 s mm10.chrUn_GL456372 12619 1 + 28664 -C s rn5.chr9 92347084 1 + 121549591 -C i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 26109 1 - 58077 G- i papHam1.scaffold15394 I 2087 I 145 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=9655.000000 s mm10.chrUn_GL456372 12620 138 + 28664 -------CCTGCCTTGTGAGGTTTCCCAGTGTGGTTAGCATTATGGGTTTCAGGGGCACTTGCTGGGAATCCAGATCTGCCTGGAGTGGAGTGACAGGCAGGGAGGCAAAGGATTAACACTGGAAAACATTGGAAGGGTGTGTCC s rn5.chr9 92347085 143 + 121549591 CCTATCTCCTGCCTTGTGAGGCTTCCCAGCATGGTTAGAATTCTGGGTTTCAGTGGCA-TTACTGGGAATCCAGATCTGCCCGGAGTGGAGTGACAGGCAGGGAGGCTAAGGACCAGCATTGGAAAACA-CGGAAGGGGGTGTCC i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26110 145 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=273.000000 s mm10.chrUn_GL456372 12758 1 + 28664 A s rn5.chr9 92347228 1 + 121549591 A i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 26255 1 - 58077 A i papHam1.scaffold15394 I 145 I 30 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=2420.000000 s mm10.chrUn_GL456372 12759 35 + 28664 CTGTCCCCTTCCTAACCTGGGGATCTATTCCCCCA s rn5.chr9 92347229 35 + 121549591 CTGTCGCCTTCCCAACCTGGGGTTCTGTTCCTCTA i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26256 30 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=-820.000000 s mm10.chrUn_GL456372 12794 1 + 28664 -G s rn5.chr9 92347264 1 + 121549591 -G i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 26286 1 - 58077 T- i papHam1.scaffold15394 I 30 I 16428 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=18414.000000 s mm10.chrUn_GL456372 12795 354 + 28664 TGGTCTCATTGTAACCTTT--------AGGAAGTGTTCTCAAACTGCATTGGGGTGAAGGTTATCCTGAAAAAAATTGCTAGAAGTTATTAAATT-----------------------------------------------------------AACAACAACAACCAGAGCTGGCATCTTTGAAATGTCTAGAATTTGTCAGGATCACTATGTGAGAAAATTGAAATAAAACAAAAGGCAACCAAGTGACTCTCGAATGAGTCTTAGCTAGGGTCTCTGAGTGTTCAACTGAGAAGAGTTCTATGTAACCCCGTCTAATATTTCCCAAATGTATTTGATCCACAAGACATCCCAATTCCCCACCCCCAGGATACCCACGAGGCCTCTGGAACTTTAGATTTGAACCAAGGCTAGCCCACt s rn5.chr9 92347265 390 + 121549591 TGGCCGCATTGTAACCTTTTTGGAGGAATGAAATGTTTTCAAGCTGGATTGGGGTGAAGGTTACCCTGAAGAAGTTTGCTAGAAACCATTAAATTAATagcagcagcagcagcagcagcagcagcagcagtaacaacaacaacaacaataacaaaacaacaacaacCAGAGCTAGCAT-TTTGAAATGTCTAGAATTCATTAGGATCAGTATGTGAGAAAATTGAAGTAAAACAAAAGGCAACCAAGTGACTCTCTAATGAG-----------------AAGTCTTCAATTGAGAAGTGTTCTGAG----------TAATATTTCCCAAGTGTATTTAACCCACGAGGCCCCCCA---CCCCCACCCCAGGACATCCATGAAGCCTCTGGGGCTTTAGATTTGAACCAAGGCTGGCCCTCC i rn5.chr9 C 0 I 1873 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=0.000000 s mm10.chrUn_GL456372 13149 554 + 28664 gtattagtcagggttctctagagtcacagaacttatggacagtctctagatagtaaaggaatttattgatgacttacagtcggcagcccaattcccaacaattgttcagtcgcagctgtgaatggaagtccaaggatctagcagttattcagtctcacgcagcaagcaggcgaaggagcaagatctagactcccttcttccaatgtccttatattgtctccagcagaaggtgtagcccagattaaaggtgtgttccaccaaacctttaatcccagatgaaaggcatagcccagattaaaggtgtgttccaccacacctttaatcccagatgaaaggcatagcccagattaaaggtgtgttccttaaactcagagattctatcttctggaatccatagccactatggctcaaaatcttcaaaccaagatccagataaggatctccaagcctccagataatggtcactggtgagccttccaactccggattgtagttcattccaaatattgtcaagttgacaaccaggaatagccactacaGCAGCCTTCTCTGCA e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e rn5.chr9 92347655 1873 + 121549591 I a score=33301.000000 s mm10.chrUn_GL456372 13703 538 + 28664 GTAGGCTAGCTATCAGAGAGTTCTATGGT--CGCCCTAACTCCACACTCCACTTCATTTCCTTGCTTCTGTCCCAGAGCTTCTCTGGTGCT-------------GTGTGGACTTCCTGTGAGCTCCTGTAGGAGTGGCTGGTTCATTGTGACTTCTGACCTCTCTTCTCTTTCTAAAGCTCACTCTAAAGGACAGCTCTGTCCAAGAAAGATCATTAAGAGTAAGTTCAAACCTGATCCTGTCAATTGCTCATCTCCCCAGTCTTGTGGTTGAAGACAGCTCTGGCCTGAGACCACAAGTCCTACTTAGGTCAGGTCCCCATAGTTTCCTAGCTCAGAGGGAGGAAGTGAAAGATGAGCAGGTGGGGAGTGGGTGATGCTCTTAACCCTTTCTGTTCCTGTTGGTTACTGAGCTGGTTAGAAATGGATGCAAATtctctctgtctcactgtctctgtctctgtctctctctttctctctctctctctctctctct---tctctctctctttctctctctctctcAtttttatattttttctttttttttttttttC s rn5.chr9 92349528 551 + 121549591 GTAGGCTAGCTGTCAGAGAGTCCTATGGTTACCCCCCAACTC---ACCCCACTTCATTTCCTTGCTCCTGTCCCAGAGCTTGTCTGGCGCGCTGTGGCCTTCCGGTGTGGACTTCCTGGGAGCTCTTGTAGGAGTGGCTGGTTCACTGTGACTTCTGGCCTCTCATCTCTTTCTAACCCTCACTCTAAAGGACAGCTCTGTCCAAGGAAGATCATTTAGAATAAGTTCAAACCTGATCCTGTCGGTTGCCAGTCTTCCCAGGTTAGTGGTTGTGGACAGCCCTGGCCTGAGCCCACATGTCCTACTTAGGTCAGGTCCGGG-AGTTTCATCTCTCAGTTGGAGGAAGTGAGAGG-GAGGAGGTGGGGAGTGGGTGTTGCTCTTAACCCCTTCTATTCCTGATGGTTACATAGCTGGTTAGAAATAGATGCAAATTCGCTTtgtctctctgtctctctgtctctctgtctctctgtctgtgtctgtgtctgtctgtctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctTCC i rn5.chr9 I 1873 I 3518 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=0.000000 s mm10.chrUn_GL456372 14241 1977 + 28664 TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCACAGATGCCCTGTTTATCCctgagttcagtctgctgcgatgccacagcccacgggcacctgtgaatatcacccaacatttttgggcagaggaaagagaaaaggggcagatggtatttcaggattgttctgagaatagtttgttcttgttggcatctgaaagagtcttgagcag e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e rn5.chr9 92350079 3518 + 121549591 I a score=90245.000000 s mm10.chrUn_GL456372 16218 1498 + 28664 gagtcgtcaggctataccctgagaGGCACCATTCTCAATTGCTTAGCATGTAGGTATTGGCATTTTAAGTGCTTAAAAAAAAAGACACATCTTCAGTGGCAGCAGGAGGGgatgtgctgatgtggatgggagaaatctcaccagactccattcctagatgaagagccatag-ctattaatggctgttaacaaagagaaaatcaaccaatattctccaggaatgaaccctctgttaggttatccagtgcttagtggtcagccctaaacacacatgcataggag-----------------tgcaggttgtatgtatgtgtgtgtgtgtgctcgcgtgcccgtgtgtgtgt-----------------------------------------------------tatgtatatatgtgtgtgtttatatataaaacaataattagagatggttttgagagaaagtgagaaaggaaggcatgaggggaatgagaaaaaaagggagcaggagaaacgatgtaaACACAGTATTCATGTATGaaaatttaaaaatatatgtaaacatttaaaataaaCAAAAGGAAAACATGTGCCCCAATTTATTTGATTTAGTTTTCTTGTTAATT----ATTTAGGTTAGCGTGAAAATGATGGGTCTCAGCATGGCATCTTCATACTTACACACCCT---------------TTTTTGCTCATTCCCTTCCCCTcttgcaggagttagttctcttctaccgtgtaggtcccaggattgaactcagggcattaaacaataaggggaggatatttatccatggaatcttctcaccagctcTCCTTCCCCCATTTTTTGTTTTAGAAATTGATTTATTTCTTCATTATTTGAGACAAGGTTTCACTGTCTCAAACAAACCTCAGGCAAACCTTGAAGTCACTAGATAAgggccaacagggtgcctcagtggataaaggtcctgaccaggcactgggacctgagtttgatgcccagaacccatacaagagtgaaaacagagaaccaactcctcaaagttgtcctctgatgtctaaatatgcAGATTTTGTAACAATACTAACACTAGGTAAAGTGAAAAAGAGGAAGTCGCTATGTCGGCCATGAAGGTAGGATGCTGTGACGACAGGCATAGGACCATGCCCAGATGATTTCTCACTTCTGTCATATGAACATACGTCATAATTGGTTTCCATTTGCCACCCAGAATGGAATCAATTACA----CAAACACTCCTATGTGTCATTGGGCTTCTTGGGCCTTTCGTTCTCAGAGGATCTTCTCCCTAAACACTGTCTCTGGACAGAGAGAACTGGCCACCTGAGATGTCAGGCATTGCAG-CAGCAGTGTAGTTAATAAGTGT------------------GAGACTCCATTACTGCAAGAGATAGGGAACCAGGAAGAGAGAAGAAAGCATGTGGAACCATGGATGAACCACACATGAGCCACACATGTCTCAGTCCTGGGTCAACTGCGTTGCCTTTACAAATGAGCTGGAAGAAGAGGTTCTGCTTTTTAATTTTAATGTCATTTCCATTTACCCTGAGGTCTATAGATTGTGTTCCAGTTTC s rn5.chr9 92353597 1557 + 121549591 ggttcctcagactacacctcgagagtcATCATTCTCAGTTATTCAGCATGCAGGTATTGGCATTTTAAGTGCTTAAAAAAGG-GATGTGTCTTCAGTggcagcaccaggcgatgtgctggtgtggatgggagaaatctcacaaggctccacccctagatgaagagctgtaggcaataaatggctgttaagaaagagaaaatgcaccagtattctccaggaatgaaccctctgttaggttatgcagtgtctggcgggcagccctaaacacatatgcatgcgagcaacattacatgaactctgcaggttgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatgtacgcacggatgtatgtatgcatgtgtatatgtgtgtatgtatacatatatgtatttatatgtatatgtgtatatatatatgtaacaataattaaaaatggttttgaaaggaagtgggaaaggaaggcatgagaggattgagacaaaaagggggcaggagaaatgatgtaaatacagcattcatgcatgaaaattttaaaa-ataTATGAACATTTAAAATAAATGAAAGGCAAACATGTGCCCTGATTTATTTGATTTAGTTTTCTTGTTAATTGATTATTTAGGTTAGCATAAAAATGATGGGCCTCAACATGGCATCTTCATACGTATTTACTGCATACTTCATACTGTATTTTTGCTCATCTCCTCCCCCTcttgcaggacttggttctctcctacactgtgggtcccaagattgaactcaggccattaaactata-gggaaggacatttgcccactgaaccttcccaccagccTTCCTTCCCCCTTTCTTTGTATTAGAAATTGACTTCTTTCTTCAtt----gagacaaggttttgccgtat-------agcccaagtgagccttgaagtcactaggtaAgggccaacaagatgcctcagtggataaaggttctgtctaggcaccaggacctgagtttgatgcccagaacttacccaagagtgaaaagagagaaccaaatccacaaagttgtcctcagacctctacatgtgcAGATATTATAACCGTACTAACACTAGGTAAAATTAGAAAGA---AGTTGCTATGTTGGCCATGAAGGCAGGATGCTGTGACTACAGGCATTGGACCATGCCCAGATGATTTCTCGCTTCTGTCACTGAACTATATGTCATAATTTGTTTCCGTTTGCCACCCAGAATGGCGTCAATTACATGAACAAACACTCCCATGTCTCATTGGACTTCT--GGGCTTTTTTTCTCAGAGGATCCTCTCTCTAAACACTGTCTCTGGGCAGAGAGA---------------TATCAGGCACTGTAGAGAACAGCATGGCTAATAAGTGCTGGTTTTGAGGTGGTAGAGAGGCCCCGTCACTGAAAGAGGTGGGGAACCAGGCGGAGAGGAGAAAGCATGTGCAACTATGGATGAGCCACAC-------------GTCTCAGTCCTGGGTCAACTGCTTTGCCTTTACAAATGAAATGGATGAAGAGGGTCTGCTTTTTC-------TTGCATTTCCACTTACCCAGAGGTCTATAGATGGtgttccagtttc i rn5.chr9 I 3518 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=0.000000 s mm10.chrUn_GL456372 17716 172 + 28664 CTTTCTTTTTTTTTTTTTttttggtttttcgagacagggtttctctgtatagccctggctgttctggaacgcactttgtagaccaggctggcctcgaactcagaaatctgcctgcctctacctcctgagtgctgggattaaaggtgtgtgccaccacgcccagcCCagtctc e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e rn5.chr9 92355154 0 + 121549591 C a score=25313.000000 s mm10.chrUn_GL456372 17888 390 + 28664 atttctgttgctatgatagcatacactgacacaaagcaacttaggggagaaagaa-------------caggtctaggttacaggccatcattgcaggaaaatctaggtgggaacttgaagcatttggtcatgtccacagtcaagagcagagagcaatgagtacaagcgtgcctgtcagtgttcaacttgctccctacacttaatgccaccaagccatttccttttacctagggattggtgctacccacagtgcactggatctttccatatcaactagcataattcggacaaccctggacagaaatacccagagattaccctaatctagacaatccattattaagactcatacaatccaagatgattatagattgtgtcaggttgacaattaaaactaatcCC s rn5.chr9 92355154 388 + 121549591 atttctgttgctgcgataacataccctgatataaagcaatttaggggaggaaaaaacctattagcccacaggtccaggttacaggtcatcgttgcaggaaagtcta----------tgaagcagttggtcatgtccacagtcaagagcagagagtaatgaatgcaagtgtgcctgtcagtgatcaacttgctccctacactcg-tgccacccagg-atgccct---acctagtaattgatgctgcccacagtggactggatctttccatatcaaccagcagaatgaggacaaccctggacagacatacccatagaccactctaatctagacaatcctttattaagactgacacaattcaagatggttatagattatgtcatgttgacaattaaaactaatcac i rn5.chr9 C 0 I 195 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=40250.000000 s mm10.chrUn_GL456372 18278 607 + 28664 AGTActggacatgatggaacataatttaaatgtgagctctcaggcagcagaggcaggtgaaatctatgtgtgaggatagccttgtctacatagtaacttttaggcaagccagacttacagatgatacccctgtcCTGAGCAAATCAAACTCAAAGCACCAGAACTTGATCACTAAATGAGATGtttaaaattttaattttatattaGCAGACCATTCTTCATGTCAGTAATTATCCAGCCATTGGTAGCATCTTGTAAACCAGTATCTACTTCTGCATGGAATCTGTCCCCTAGGACAATCCCAGAGGACCAGAATGAAGAGGAGTCAGATGACTATCAGCTCATGTTCAAGCACTTCAAAGAACACAAGGTTGAGATCGCAAGTGCCATCACCAAGCCGTTTCCTTTCCTCATGAGCCTTCGAGACCAAGACTTCATCTCGGAGCAGAAGTTTCAGGTGAGTGTGGAGAATGAACTCAGTCCTGACAGCAAGCCTGCCCTGTGCTGTATCATGCTGTACTTCTGGGTGCAGCCAACAGGCTGAAGCACCTCCAGGGATGAAGGGACATCACCT-TTGTAAGTCAGAAGGTAACTGGAGGGATAGACA s rn5.chr9 92355737 600 + 121549591 AGTGTTgggcatggtggagcatgatttgaac-tgagttctcaggagacagaagcaaatgaaatct--ccatgaggacaaccttgtctacatagtaacttccaggcaagccagacttacagttggtaccca-gtcccaaacaaaccaaaCCCAAAGCATCACAACATA--TATTATAGTAGATGTTTAAAATTTTAATTTTACGTTAGCGGACTATCCTTTGTGTCAGAAATTATCCAGCTATTGGTGGCGTCTTGTAAACTGGTATC-AATTCTGCATGGAATCTATCCCTTAGGATGATCCCAGAAAACCAGAATGGAGAGCAGTCAGATGACTATCAGCTAATGTTCAAGCTCTTCAAAGAAAACAAGGTGGAGATTGCAAGTGCCATCACCAAGCTATTTCCTTTCCTCATGAGCCTTCGAGACCGAGACTTCATCTCGGAGCAGAAGTATCAGGTGAGTGTGGGGAATGAACTCAGTCCTGACAGCAAGCCTGCCCCGTGCTGTATCATGCTGAACCTGT-GGTGCAGCCAACAGGCTGAAGTGCTTTCAGGGAGGAGGGAGCTTCACTTCTTGTAAGTCAGAAGATAACCAGAGAGGCAGATG i rn5.chr9 I 195 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=-373.000000 s mm10.chrUn_GL456372 18885 5 + 28664 -TCACA s rn5.chr9 92356337 5 + 121549591 -TCACA i rn5.chr9 C 0 C 0 s proCap1.scaffold_11117 5643 5 + 44248 TTCTT- i proCap1.scaffold_11117 N 0 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=-265.000000 s mm10.chrUn_GL456372 18890 1 + 28664 C s rn5.chr9 92356342 1 + 121549591 A i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_60870 3525 1 + 11184 A i tarSyr1.scaffold_60870 N 0 I 1176 s proCap1.scaffold_11117 5648 1 + 44248 C i proCap1.scaffold_11117 C 0 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I a score=-507.000000 s mm10.chrUn_GL456372 18891 7 + 28664 GAACCAT- s rn5.chr9 92356343 7 + 121549591 GGACCAT- i rn5.chr9 C 0 C 0 s proCap1.scaffold_11117 5649 7 + 44248 -TACCTGA i proCap1.scaffold_11117 C 0 I 1510 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=1080.000000 s mm10.chrUn_GL456372 18898 21 + 28664 TTACATTCACCTCTGCAGTAA s rn5.chr9 92356350 18 + 121549591 TTACAT---CTTCTGCAGTAA i rn5.chr9 C 0 C 0 e pteVam1.scaffold_24822 6580 504 + 7207 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=-31.000000 s mm10.chrUn_GL456372 18919 1 + 28664 C s pteVam1.scaffold_12135 39676 1 + 44403 T i pteVam1.scaffold_12135 n 504 I 26 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e rn5.chr9 92356368 0 + 121549591 C e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=-50.000000 s mm10.chrUn_GL456372 18920 6 + 28664 TGAGGC s rn5.chr9 92356368 1 + 121549591 -----C i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 39677 26 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=-794.000000 s mm10.chrUn_GL456372 18926 9 + 28664 ---TGAGGCACG------------------ s rn5.chr9 92356369 9 + 121549591 ---TGAGGCACA------------------ i rn5.chr9 C 0 C 0 s dasNov3.JH581855 80071 30 - 513109 CCTTGGTGCCCACTGGAGTTGGACTGAACT i dasNov3.JH581855 N 0 N 0 e pteVam1.scaffold_12135 39677 26 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=91.000000 s mm10.chrUn_GL456372 18935 1 + 28664 T s rn5.chr9 92356378 1 + 121549591 T i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 39677 26 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=756.000000 s mm10.chrUn_GL456372 18936 5 + 28664 GGTGA s rn5.chr9 92356379 5 + 121549591 GGTGA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_118384 990 5 + 4161 GGTAT i dipOrd1.scaffold_118384 N 0 I 2532 e pteVam1.scaffold_12135 39677 26 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=100.000000 s mm10.chrUn_GL456372 18941 1 + 28664 C s rn5.chr9 92356384 1 + 121549591 C i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 39677 26 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=-500.000000 s mm10.chrUn_GL456372 18942 3 + 28664 AGC- s rn5.chr9 92356385 3 + 121549591 AGT- i rn5.chr9 C 0 C 0 s pteVam1.scaffold_12135 39703 3 + 44403 -GTG i pteVam1.scaffold_12135 I 26 I 153 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=137.000000 s mm10.chrUn_GL456372 18945 5 + 28664 GAAGA s rn5.chr9 92356388 5 + 121549591 GATGG i rn5.chr9 C 0 C 0 e pteVam1.scaffold_12135 39706 153 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=-585.000000 s mm10.chrUn_GL456372 18950 3 + 28664 ATA-- s rn5.chr9 92356393 3 + 121549591 ATA-- i rn5.chr9 C 0 C 0 s vicPac1.scaffold_4435 23181 3 + 111236 --ACT i vicPac1.scaffold_4435 N 0 I 140 e pteVam1.scaffold_12135 39706 153 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=351.000000 s mm10.chrUn_GL456372 18953 5 + 28664 GCAAG s rn5.chr9 92356396 5 + 121549591 GCAAA i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 23184 140 + 111236 I e pteVam1.scaffold_12135 39706 153 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 35850 5747 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=38.000000 s mm10.chrUn_GL456372 18958 1 + 28664 C s rn5.chr9 92356401 1 + 121549591 C i rn5.chr9 C 0 C 0 s turTru2.JH490333 41597 1 - 53618 T i turTru2.JH490333 I 5747 I 120 e vicPac1.scaffold_4435 23184 140 + 111236 I e pteVam1.scaffold_12135 39706 153 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=6510.000000 s mm10.chrUn_GL456372 18959 96 + 28664 AGGAATGCTCCGAAGTGCAGAGCATCCCAGGGTCACTCGTGTAATGTAACAACAGAAACTAGGATGCAAGTAGACACACCTAAGCTGGGCTGCCTT s rn5.chr9 92356402 91 + 121549591 AGGAATGCTCCAAAGT-----GCATACCAGGGTCACTCGTGCAATGTAACAACAGAAACCAGGATGCACATAGACACATCTAAGCAGCACTGCCTT i rn5.chr9 C 0 I 332 e vicPac1.scaffold_4435 23184 140 + 111236 I e pteVam1.scaffold_12135 39706 153 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 41598 120 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=0.000000 s mm10.chrUn_GL456372 19055 1 + 28664 C e vicPac1.scaffold_4435 23184 140 + 111236 I e pteVam1.scaffold_12135 39706 153 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 41598 120 - 53618 I e rn5.chr9 92356493 332 + 121549591 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=1183.000000 s mm10.chrUn_GL456372 19056 32 + 28664 CAAAGCCTACTTACTCCAAATTCCAG-----------------AGCCAG s rn5.chr9 92356825 49 + 121549591 CAAAGCCTATTTATTCCATATCCCAGAGTCTGAGGGCTTTGAAAGTCAC i rn5.chr9 I 332 C 0 e vicPac1.scaffold_4435 23184 140 + 111236 I e pteVam1.scaffold_12135 39706 153 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 41598 120 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=273.000000 s mm10.chrUn_GL456372 19088 1 + 28664 A s rn5.chr9 92356874 1 + 121549591 A i rn5.chr9 C 0 C 0 s pteVam1.scaffold_12135 39859 1 + 44403 A i pteVam1.scaffold_12135 I 153 C 0 e vicPac1.scaffold_4435 23184 140 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 26287 16428 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 41598 120 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=614.000000 s mm10.chrUn_GL456372 19089 4 + 28664 GGCT s rn5.chr9 92356875 4 + 121549591 GGTA i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 42715 4 - 58077 GATT i papHam1.scaffold15394 I 16428 I 977 s vicPac1.scaffold_4435 23324 4 + 111236 GATT i vicPac1.scaffold_4435 I 140 I 1184 s turTru2.JH490333 41718 3 - 53618 -AGT i turTru2.JH490333 I 120 I 1 s pteVam1.scaffold_12135 39860 4 + 44403 AACT i pteVam1.scaffold_12135 C 0 C 0 e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=-1193.000000 s mm10.chrUn_GL456372 19093 4 + 28664 -GTTG s rn5.chr9 92356879 4 + 121549591 -GTTG i rn5.chr9 C 0 C 0 s turTru2.JH490333 41722 3 - 53618 -ATT- i turTru2.JH490333 I 1 I 1242 s pteVam1.scaffold_12135 39864 4 + 44403 GATA- i pteVam1.scaffold_12135 C 0 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=-150.000000 s mm10.chrUn_GL456372 19097 1 + 28664 G s rn5.chr9 92356883 1 + 121549591 C i rn5.chr9 C 0 C 0 s pteVam1.scaffold_12135 39868 1 + 44403 G i pteVam1.scaffold_12135 C 0 I 2128 e vicPac1.scaffold_4435 23328 1184 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=22343.000000 s mm10.chrUn_GL456372 19098 345 + 28664 GTCATGTGAAGACAGTACTTGGGGAGTCCTGTTTGCTTCTCTATCTTCAAGTTGTTCCTGGTTCTTCAGGCAACTCTGAAGCCCTAGAATGAGAGGTACAGGTCAGTGGTGGGAT--CTGCGGTGATAACAAAGACCTTTTCTTCTTTATGCATTCTCTTTGCCCTGTGGCTAGGATGCTATGCTCACTTGGTTTCCTCAAGCTCTTCAGACCAGCTCAGTCCTTGGGGAGTTAATTGTCTGGACCTCAAGGC------------------TGCCACTCATGGTCTGTTAGGGCCTGGCTTTTACAGACATATCATTTAATTATTCATCAAACCCTCTCTTCCCTGTCTACTATTTGTCAGCATC s rn5.chr9 92356884 359 + 121549591 ATTATCTGAGGACAGAACTTGGGGAGTCCTGTTTACTTCTCTTTCTTCAAGTTGTTCCTGGCTCCTCAGTCACCTCTGAAGCCCTAGACTG-TAGTAAAAGGTCAGTGATGGGATTCCCCTGGTGGTAACAAAGACCTTTTCTTCTTTATGCATTCTCTTTGCCCTGTGGCTAGG-----ATGCTCACTTGGTTGCTGCCAGCCCTTTAGAGCAGCTCAGTCTTTAGGGAGTTAGTTGTCTGATCCCCAAGGTCCCCAAGGTCCTGCCTGGTACCACTCAGGGTCTGGGAGGGCCTGGCTCTTACAGACATATCATTTGATTATTCCTCAAATTTTCTCTTCCCTGTCTACTGTTTGTCAGCATC i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26003760 16960 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=573.000000 s mm10.chrUn_GL456372 19443 2 + 28664 AG s rn5.chr9 92357243 2 + 121549591 AG i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26020720 2 + 30916457 AG i myoLuc2.GL429770 I 16960 I 414 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=641.000000 s mm10.chrUn_GL456372 19445 9 + 28664 AGCTTCTTT s rn5.chr9 92357245 9 + 121549591 AGCTGCTTT i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26020722 414 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=969.000000 s mm10.chrUn_GL456372 19454 5 + 28664 CAGAT s rn5.chr9 92357254 5 + 121549591 CAGAT i rn5.chr9 C 0 C 0 s tupBel1.scaffold_131863.1-8550 4887 5 + 8550 CACAT i tupBel1.scaffold_131863.1-8550 N 0 I 152 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26020722 414 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=9187.000000 s mm10.chrUn_GL456372 19459 154 + 28664 GAGC-TACGTCTGTTAGTACAGAGGACATGTAAGATGTCACCTCGGTATTTGCCAAACTC-AGACATTTTACAAAAAAAGAGAAATGGTGTTTGAACTAATGTAAGCCTCATATAACCCATAAATCCATCATGACATAATTCTGCATTCACTATTT s rn5.chr9 92357259 153 + 121549591 GAGCAGGGGTTTGTTTGTACAGAGGACATGTAAGACGTCACCTTGGCATTTGCAAAACTCAAGACATTTTACGAGAAA--AGAAATGGTGCTTGAACCAATCGAAGCCTCA-ATAACCCATACAACCATCATGACATAATCCTGTATTCAATATTT i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26020722 414 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tupBel1.scaffold_131863.1-8550 4892 152 + 8550 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=273.000000 s mm10.chrUn_GL456372 19613 1 + 28664 T s rn5.chr9 92357412 1 + 121549591 T i rn5.chr9 C 0 C 0 s tupBel1.scaffold_131863.1-8550 5044 1 + 8550 T i tupBel1.scaffold_131863.1-8550 I 152 N 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26020722 414 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=15500.000000 s mm10.chrUn_GL456372 19614 220 + 28664 AAGGAATATCAAGAAATATGTAGCAACCTGATCCCAGTGGAGAGAGTCGTGTACTATATCCTCAGCAATATAGAGAAGAAG-TTAGCTGGGATCTTCTGAAAGTGATATTCAGCAAAACACATCTGAAGGCCTACCCCAGCTTAAAGGAGACTCTAAAACACTTCATCCTAAATGGTAACTATAGCTCTCACCTGCTTCAGGGAAGGAAAGACAATTTCAT s rn5.chr9 92357413 218 + 121549591 AAGGAATGTCAAGAAACATGTAAGAACCTGGTTCCAGTGGACAGAGTGGTGTATGACATCCTCAGTGACATACAGAAGAAGTTTAGCCGGGATCTTCTGAAAGTGATATTCAGCAACGTGCATCTGAAGGCCTACCCTGACTTACAGGAGATTCTAAAACACT---TCCTAAGTGGTAACTATAGCTCTCACCTGCTTCAGGGAATGAAAGACAATttcat i rn5.chr9 C 0 I 21 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26020722 414 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=0.000000 s mm10.chrUn_GL456372 19834 29 + 28664 Tttttttttttttgagacagtgtttctct e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26020722 414 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e rn5.chr9 92357631 21 + 121549591 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=555.000000 s mm10.chrUn_GL456372 19863 21 + 28664 gtatagtgctggctgtcctgg s myoLuc2.GL429770 26021136 20 + 30916457 atATC-TGACAGTTgtcctgg i myoLuc2.GL429770 I 414 I 9147 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e turTru2.JH490333 41725 1242 - 53618 I e rn5.chr9 92357631 21 + 121549591 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=0.000000 s mm10.chrUn_GL456372 19884 98 + 28664 aactcactttgtagaccaggctggcctcaaactcagaaatccacctgcctctgcctcccgagtgctgggattaaaggcgtgcgccaccatgtccggct e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e rn5.chr9 92357631 21 + 121549591 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=351.000000 s mm10.chrUn_GL456372 19982 5 + 28664 CATCC s rn5.chr9 92357652 5 + 121549591 cattc i rn5.chr9 I 21 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 5656 1510 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=1525.000000 s mm10.chrUn_GL456372 19987 11 + 28664 ATTCATTCATT s rn5.chr9 92357657 11 + 121549591 attcattcatt i rn5.chr9 C 0 C 0 s proCap1.scaffold_11117 7166 11 + 44248 ACTGAAGCATT i proCap1.scaffold_11117 I 1510 I 95 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=4356.000000 s mm10.chrUn_GL456372 19998 59 + 28664 TTTTCATCGATAGTTGACATATAatttaatgagagactatgtcatgccaagcacagggg s rn5.chr9 92357668 58 + 121549591 ttttcattGATATTTGACATATAATTTACTGAAAGACTATGTCATGCCAAGCACA-GGG i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 7177 95 + 44248 I e dipOrd1.scaffold_118384 995 2532 + 4161 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=611.000000 s mm10.chrUn_GL456372 20057 3 + 28664 gga s rn5.chr9 92357726 3 + 121549591 AGA i rn5.chr9 C 0 C 0 s dipOrd1.scaffold_118384 3527 3 + 4161 GGA i dipOrd1.scaffold_118384 I 2532 N 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 7177 95 + 44248 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=1597.000000 s mm10.chrUn_GL456372 20060 29 + 28664 tataggaaagacatatggctcatgtccta s rn5.chr9 92357729 29 + 121549591 TGTAGGAAAAACATACGGCCCATGTAGTC i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 7177 95 + 44248 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=-829.000000 s mm10.chrUn_GL456372 20089 1 + 28664 -a s rn5.chr9 92357758 1 + 121549591 -A i rn5.chr9 C 0 C 0 s proCap1.scaffold_11117 7272 1 + 44248 C- i proCap1.scaffold_11117 I 95 I 50 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=2078.000000 s mm10.chrUn_GL456372 20090 24 + 28664 ggagcttacaCATAGGCCAAGTAA s rn5.chr9 92357759 24 + 121549591 GGAGCTTACACCTAGGCCAAGTAA i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 7273 50 + 44248 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 3526 1176 + 11184 I a score=-529.000000 s mm10.chrUn_GL456372 20114 2 + 28664 -CA s rn5.chr9 92357783 2 + 121549591 -CA i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_60870 4702 2 + 11184 cc- i tarSyr1.scaffold_60870 I 1176 I 185 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e proCap1.scaffold_11117 7273 50 + 44248 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I a score=573.000000 s mm10.chrUn_GL456372 20116 2 + 28664 CA s rn5.chr9 92357785 2 + 121549591 CA i rn5.chr9 C 0 C 0 s proCap1.scaffold_11117 7323 2 + 44248 CA i proCap1.scaffold_11117 I 50 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 42719 977 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 4704 185 + 11184 I a score=67.000000 s mm10.chrUn_GL456372 20118 1 + 28664 T s rn5.chr9 92357787 1 + 121549591 T i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 43696 1 - 58077 C i papHam1.scaffold15394 I 977 I 620 s proCap1.scaffold_11117 7325 1 + 44248 C i proCap1.scaffold_11117 C 0 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 4704 185 + 11184 I a score=605.000000 s mm10.chrUn_GL456372 20119 5 + 28664 AGATA s rn5.chr9 92357788 5 + 121549591 AGACA i rn5.chr9 C 0 C 0 s proCap1.scaffold_11117 7326 5 + 44248 AGAGG i proCap1.scaffold_11117 C 0 N 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 43697 620 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 4704 185 + 11184 I a score=9840.000000 s mm10.chrUn_GL456372 20124 152 + 28664 ACTGCTCAGCCAGAACCTGATTTTCATGCTATGAAACACAGTATGAAGGATGAGTTTCTTTAGACAGGAGCCAGCTCTGTCTGAGGCTTGCAGACATATGCAATGGTAAAAATGCAGAATTTGCCATTCAGCAGAGTGACTACTCTACTACT s rn5.chr9 92357793 141 + 121549591 ACTGCTCA--CAGGACCTGATTTTCATGCTATTAAACACAGTATGAAGGATGAGTTTCCTTAGACAGGAGCCAGCTCTCTTTGATGCTTGCAGACATTTGCAATTGTAAACATGCAAAATTTATCACTCAGCAGAGTC---------CTACT i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 43697 620 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I e tarSyr1.scaffold_60870 4704 185 + 11184 I a score=-79.000000 s mm10.chrUn_GL456372 20276 7 + 28664 TCAGTTT---- s rn5.chr9 92357934 7 + 121549591 TCAGTTT---- i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_60870 4889 7 + 11184 ----TTTGCCA i tarSyr1.scaffold_60870 I 185 N 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 43697 620 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I a score=4375.000000 s mm10.chrUn_GL456372 20283 52 + 28664 TCTTCTTTGAAGAGTAGAGAAATCACAAGGGGAGCCCAGGGTGGGCCCAGAT s rn5.chr9 92357941 52 + 121549591 CCTTCTTTGAAGAGTAGAGAAATCACAAGGGGAGCCCAGGCTAGGCCCAGAC i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 23328 1184 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 43697 620 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I a score=-791.000000 s mm10.chrUn_GL456372 20335 2 + 28664 -AC s rn5.chr9 92357993 2 + 121549591 -AC i rn5.chr9 C 0 C 0 s vicPac1.scaffold_4435 24512 2 + 111236 GG- i vicPac1.scaffold_4435 I 1184 I 1419 e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 43697 620 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I a score=1909.000000 s mm10.chrUn_GL456372 20337 39 + 28664 TCGAGAGAGAAGCATGTGTCAACCGAGAGTGTAAAAACA s rn5.chr9 92357995 39 + 121549591 TTGAGAGGGTAGCCCGTGTCTGCCTAGAGTGGGAGAACA i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 24514 1419 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 43697 620 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e turTru2.JH490333 41725 1242 - 53618 I a score=-951.000000 s mm10.chrUn_GL456372 20376 1 + 28664 -A s rn5.chr9 92358034 1 + 121549591 -G i rn5.chr9 C 0 C 0 s turTru2.JH490333 42967 1 - 53618 C- i turTru2.JH490333 I 1242 N 0 e vicPac1.scaffold_4435 24514 1419 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 43697 620 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=38.000000 s mm10.chrUn_GL456372 20377 1 + 28664 A s rn5.chr9 92358035 1 + 121549591 G i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 44317 1 - 58077 G i papHam1.scaffold15394 I 620 I 7051 e vicPac1.scaffold_4435 24514 1419 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=9996.000000 s mm10.chrUn_GL456372 20378 208 + 28664 GTGGACTTTTAGAACCAAGGTGCTGGCACGTTGTCGAATGAACATAAAATCAGCAGGTCTCAGGTAGAGAACAGCCTCTGTTGTTCCCACTGGCTCCCTGTAGCTTCAGCTTTCTGGCTCCCCTACCTCTAGAGGACTCTCCCTTGCAGAAGGCACAGTCCATCAGTTCTGGTGTAGACTGTTGCTGCAGAACTTGGGTGTGGTTCCT s rn5.chr9 92358036 165 + 121549591 GTGGGCTTTAAGAACCATGGTGTTGGCACATTGC---ATGAACATGAAGTCAGCAGGTCCTGGGTAGAGAACAGCCTTTGCTGTTCCCACTGGTTCCCTGTAGCTTCAGCTTTTCAGCACCCCTATCTCTAGAGGACTCTCCCTT---------------------------------------CTGCAGGGCCTGGATGTGGCT-CT i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 24514 1419 + 111236 I e pteVam1.scaffold_12135 39869 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 44318 7051 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=-951.000000 s mm10.chrUn_GL456372 20586 1 + 28664 -A s rn5.chr9 92358201 1 + 121549591 -G i rn5.chr9 C 0 C 0 s pteVam1.scaffold_12135 41997 1 + 44403 C- i pteVam1.scaffold_12135 I 2128 n 2128 e vicPac1.scaffold_4435 24514 1419 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 44318 7051 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=15810.000000 s mm10.chrUn_GL456372 20587 346 + 28664 TTCCTATTGCTT----GGGCATTTTGAAATGCAGCTCTGAGGGCCAAGAGCTGGGGTTTCACTCCTCACTTGCCACCTGAGGGTCACTGGCAGCCAAGTCACTTCCTGTGTTGCCAGCAGGATGCACTTTTTCAGTTTCTCCTCACTCATCCTGCCTGGGGAAGCTTCCTCTTCAGGGCTGTGCTTCTCTGTAACCAGAATAACTT---------CTCTGACTCATTTCAAGCAGA-----GtctctctatttctctctccatccctctatttcttcttctttctttcATCCTTGATTTATAGTAGCTTTCCCCCTTTCCTCTC----------------------TATCCCACTTCCctccccttccctctccctccctcccctc s rn5.chr9 92358202 366 + 121549591 TTCCTATTGCTTGGTCGGTCGTCTTGAAATGCAGCTCTGAGGGTCAAGAGCTGGTGTTTCACTCCTCCCTTACCACCCGA-GGTCACTGACAGCCAAGCCACTTCCTGTGTTGTTTGCAGAAAGCAGCTTTCCAGTTTCTCCTCACTCATCCT----------GCTTCCTCTTCAGGGCTG--------TGTAACCAGAACAACTTCCCTGACTCCCCTGACTCAGTTCAAGAAAGTCCcttcctctctttctttctttctttctttctttctttctttctttctttctttctttctttcta-tccctctatttcttctttctCGTATCCTTGAAAGACAGTAGCTTTTCCCATTCCTTTACCTTCTCCTTGccttccctcccctc i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 24514 1419 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 44318 7051 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=0.000000 s mm10.chrUn_GL456372 20933 303 + 28664 ttcctcctttttcttctcttccctccctccttctcttttctctccttttcccttcctccttctctttcctcttcgtccctcttttccctctctctctcctccttccctcccaccttcccctctcctttcctcccttcccttttccttcttccctctcccATCCTTCCCTTTCTTctctctccctccctccccttccttccctctctcttccttcttcctcccttcccccttccttcctctcccctcactcccttcctccttctcccttccctccctccctccttctcccttccctcactccct e vicPac1.scaffold_4435 24514 1419 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 44318 7051 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e rn5.chr9 92358568 0 + 121549591 C a score=3564.000000 s mm10.chrUn_GL456372 21236 57 + 28664 ccttctcccttccctccctccctccttccctccctccctctctccTGTCTCTCTAAG s rn5.chr9 92358568 57 + 121549591 cctcccctcctccttccctcgttccctccctcccttcttcACTGCTATCTCTCTAAG i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 24514 1419 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 44318 7051 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=-820.000000 s mm10.chrUn_GL456372 21293 1 + 28664 -C s rn5.chr9 92358625 1 + 121549591 -C i rn5.chr9 C 0 C 0 s vicPac1.scaffold_4435 25933 1 + 111236 A- i vicPac1.scaffold_4435 I 1419 I 24 e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 44318 7051 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=1620.000000 s mm10.chrUn_GL456372 21294 24 + 28664 CTTCTTTTCCCCTTCTGAAGCCCC s rn5.chr9 92358626 24 + 121549591 CTTCCTTTTCCCTACAGAAGCCCC i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 25934 24 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 44318 7051 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=29.000000 s mm10.chrUn_GL456372 21318 1 + 28664 T s rn5.chr9 92358650 1 + 121549591 C i rn5.chr9 C 0 C 0 s vicPac1.scaffold_4435 25958 1 + 111236 T i vicPac1.scaffold_4435 I 24 I 8355 e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 44318 7051 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=1878.000000 s mm10.chrUn_GL456372 21319 30 + 28664 TGCCTTTCCTCTCATTGCTGTGTCACTTAT s rn5.chr9 92358651 30 + 121549591 TGCCTTTCCAATCATAGCGGTGTCACTTGT i rn5.chr9 C 0 I 916 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 44318 7051 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=0.000000 s mm10.chrUn_GL456372 21349 982 + 28664 AAACATCTGCCTTTACTAATTGGCTTTCACACGCCTCTGATCATTTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 44318 7051 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e rn5.chr9 92358681 916 + 121549591 I a score=13301.000000 s mm10.chrUn_GL456372 22331 205 + 28664 ACTATTTTCCTGCCTTAATCCTTCTCTAATGGACCATTTCTAacacacacacacacacacacacacacacacacacacacacacacacgcacGCTCA------------------AGCATATAGctatccatatatctaccaatctatccaactatatatacccatccacttagtcaccctcataccaatacaaacatctagctatccatattcctgccagtc s rn5.chr9 92359597 221 + 121549591 ACTATTTTCCTGCCTTAATCTTTAGAGAAATGACCATTCCCAacacacacacacacacacacacacacacacacacacacacacacacacacaaacacaGAGAGAGAGAGAGAGAGGCATGTAGccatccatatatctaccaacctatccaactataca--cccaaccatttacttatccacataccaatacaagcatctagctatccatATACCTGCCAGTA i rn5.chr9 I 916 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 44318 7051 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=876.000000 s mm10.chrUn_GL456372 22536 8 + 28664 tatgctat s rn5.chr9 92359818 8 + 121549591 AATGTTat i rn5.chr9 C 0 I 6193 s papHam1.scaffold15394 51369 8 - 58077 TATTCTGT i papHam1.scaffold15394 I 7051 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=-851.000000 s mm10.chrUn_GL456372 22544 14 + 28664 --tcatctatctatgt s rn5.chr9 92366019 14 + 121549591 --ccattcaattatcc i rn5.chr9 I 6193 C 0 s papHam1.scaffold15394 51377 14 - 58077 CAACATACAAAAAC-- i papHam1.scaffold15394 C 0 I 513 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=832.000000 s mm10.chrUn_GL456372 22558 50 + 28664 atctatctat--gtatctatgtatctatgtatctatctatctatctatctat s rn5.chr9 92366033 52 + 121549591 actcattcatTACTCTCCAAATAACAACATAAccatccatctgtctgccagt i rn5.chr9 C 0 T 6259 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 51391 513 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=28176.000000 s mm10.chrUn_GL456372 22608 431 + 28664 ctatctatctacctatctaatctatcattgatccatgcattcaccgaactatccatcaatctaaccacccattcaCTTCACTCTTCCTGATCCTCCCCATAGATGGATAGATGATGTTCAATATTTGAATTTTCTCAGGAGACACAAGCAGTATAGAAGCTTCACGTCAGGGTGTTTGAGATCTGTCTTGAGTGTAGACCATACACCAAGAGAAGGAAGCTGAGAACTCTAGATGCAGCCAAGGATATTGAGTTATGAGTGACAGTGTTTCACCTAACTAGACATGGAGTCCTAATGTCAGCATTTGGGGTACACTACCAAAGAGCACTGGTCCCCTTCAGCCACTTT-TCCATGGTTGGGACAGGAGTGTGGACATGATGAATAAAATGGAAGCTGAG------CCTGGGAAAGACTTCTGAGGAGAACCTGGGAAG s rn5.chr9 92359826 422 + 121549591 ctgtccatccacccatccacccactcatccatccatccat-------------catccatcataccatccattcatTTCACTCCTCCTGATTCTCCTCATAGATGGCTAGATTATGTTCAATATTTGAATTTTCTCAGGAGACACAAGCAGTATAGAAGCTTCACGACAAGCTGTTTGAGATCTGTCTTGAGTATAGACCATACACCAAGAGAGGGAAGTTGAGAACTCTAGATGCAGCCAAGGATCTTGAGTTGTGAGTGACAGTGTTTCACCTAACCAGACATGGAGTCCTAGTGTCATCACTTGGGGTACACTACCGAGGGGCACTGATATCCTTCAACTACTTTCCCCATGCTTGGGCCAAGCGTGTAGA---AATGAAGAAAATAAAAGCTGAGAAAACTCCTGGGTAAGACTTTTGAAGAGGACTTGGGAAG i rn5.chr9 T 6259 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 51391 513 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=61.000000 s mm10.chrUn_GL456372 23039 3 + 28664 AGG s rn5.chr9 92360248 3 + 121549591 GGA i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 51904 3 - 58077 AGT i papHam1.scaffold15394 I 513 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=-68.000000 s mm10.chrUn_GL456372 23042 4 + 28664 ATGT s rn5.chr9 92360251 4 + 121549591 ATGT i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 51907 1 - 58077 ---C i papHam1.scaffold15394 C 0 I 179 s tarSyr1.scaffold_175677 381 2 - 3989 --GT i tarSyr1.scaffold_175677 N 0 I 2 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=-247.000000 s mm10.chrUn_GL456372 23046 3 + 28664 CCT- s rn5.chr9 92360255 3 + 121549591 CCT- i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_175677 385 3 - 3989 -CTG i tarSyr1.scaffold_175677 I 2 I 271 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 51908 179 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=10350.000000 s mm10.chrUn_GL456372 23049 169 + 28664 CTTCATCCACAGTGAACAGAGACATCTATGATAGGAAAGGATGATGAGCAGAACACACAGAAAGGGAGAAGAGGAGACATTTAGATTCAACTTCGTGGGAAA-ACCAGGAACAGCAAGCTTACCAAAGAGACTGGACTGAGCTGGGGAAATGAGTGCTATGGGGG-AAAGG s rn5.chr9 92360258 171 + 121549591 CTTTGTCCACAGTGAACAGAGACTTTCATGATATGAAAGGATGATGACCAGAACATATAGAAAGGGAGGAGATGATATGCTTAGATTCAACTCTGTCAGAAATATCAGGAACAACAAGCTAACTAAAGAGAACAGACCGAGCTGGGGAGATGAACACAATGGGGGAAAAGG i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e papHam1.scaffold15394 51908 179 - 58077 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e tarSyr1.scaffold_175677 388 271 - 3989 I a score=38.000000 s mm10.chrUn_GL456372 23218 1 + 28664 G s rn5.chr9 92360429 1 + 121549591 G i rn5.chr9 C 0 C 0 s papHam1.scaffold15394 52087 1 - 58077 A i papHam1.scaffold15394 I 179 N 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e tarSyr1.scaffold_175677 388 271 - 3989 I a score=100.000000 s mm10.chrUn_GL456372 23219 1 + 28664 C s rn5.chr9 92360430 1 + 121549591 C i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e tarSyr1.scaffold_175677 388 271 - 3989 I a score=-1034.000000 s mm10.chrUn_GL456372 23220 1 + 28664 -G s rn5.chr9 92360431 1 + 121549591 -T i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_175677 659 1 - 3989 A- i tarSyr1.scaffold_175677 I 271 I 31 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=939.000000 s mm10.chrUn_GL456372 23221 29 + 28664 AGGCTCACTTACACCACGAGGTGTAAGTG s rn5.chr9 92360432 24 + 121549591 AGGCTCACTTATAAAATGAGGTGC----- i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e tarSyr1.scaffold_175677 660 31 - 3989 I a score=-369.000000 s mm10.chrUn_GL456372 23250 2 + 28664 -TA s tarSyr1.scaffold_175677 691 2 - 3989 TT- i tarSyr1.scaffold_175677 I 31 I 22 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e rn5.chr9 92360456 0 + 121549591 C a score=0.000000 s mm10.chrUn_GL456372 23252 22 + 28664 GAATATGTGGAGAAGATCATAT e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e rn5.chr9 92360456 0 + 121549591 C e tarSyr1.scaffold_175677 693 22 - 3989 I a score=155.000000 s mm10.chrUn_GL456372 23274 10 + 28664 AAAACAGAGa s tarSyr1.scaffold_175677 715 7 - 3989 ---CAAGAGA i tarSyr1.scaffold_175677 I 22 I 10 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e rn5.chr9 92360456 0 + 121549591 C a score=1066.000000 s mm10.chrUn_GL456372 23284 39 + 28664 tttatataaaaaagatttatataaaaaaGAGATTATATA s rn5.chr9 92360456 29 + 121549591 ----------AGAGTTTAATATGAGGAGAAAATTATATA i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e tarSyr1.scaffold_175677 722 10 - 3989 I a score=107.000000 s mm10.chrUn_GL456372 23323 9 + 28664 -AAACAGAGA s rn5.chr9 92360485 9 + 121549591 -AAGTAGAGA i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_175677 732 9 - 3989 GAAGGAAAA- i tarSyr1.scaffold_175677 I 10 I 238 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I a score=17225.000000 s mm10.chrUn_GL456372 23332 282 + 28664 TGCTAATAGACAGTGTA-AAGCACTCATGAGCCCTACACACAGAGAAAAAAAGTGAAGAAGAGGGAATTAAAAACCAGTAGGAAGCCAGTtaaatgacacttgctgccaagcctgttggcctgagtctgctccctgggactcacatttatacaggagagggctgattcctgtaagttttcttctgacctctacatgtgtgtcatggtatgtgAGAAACTCTCCCACCCCAAAATGAATATATCAACAAGCAGCAGCAGCAACAACAGTAAAAATAACAATAAG s rn5.chr9 92360494 271 + 121549591 TGCTGATAAATAGTATACGAGGAGTGATCAGCCCTACACACAGATTAAAA-----ATGAAGGATGAATCAAAAgccagcaggaggccagttaaatgacacttgctgccaagtctgatgactcgagtttgctccctgggactcacatctgtgtaggagagggctgatgcctataagttgtcttctgacctctacctatgtgccatggtatgtgAGAGACTTTCCCACCCCAAAATAAATAC-------AGCAACAGCAACAACAACCTTAAAAGTAACAATAAg i rn5.chr9 C 0 I 1404 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e tarSyr1.scaffold_175677 741 238 - 3989 I a score=0.000000 s mm10.chrUn_GL456372 23614 12 + 28664 TTGAGAGCAAAT e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e rn5.chr9 92360765 1404 + 121549591 I e tarSyr1.scaffold_175677 741 238 - 3989 I a score=1037.000000 s mm10.chrUn_GL456372 23626 11 + 28664 CTTATCTTCTG s rn5.chr9 92362169 11 + 121549591 CTTATCTTCTG i rn5.chr9 I 1404 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e pteVam1.scaffold_12135 41998 2128 + 44403 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e tarSyr1.scaffold_175677 741 238 - 3989 I a score=9057.000000 s mm10.chrUn_GL456372 23637 94 + 28664 GGAAGGGAGGAAACAGTTTGAGACTTTGGAGG----GA--AGGAGCTAGGAGCTGAAAGCAACTTCTGGCCCAAGG---CGATTACATCAGCTGTGGGTTTTC s rn5.chr9 92362180 87 + 121549591 GGAAGGGAGGAAACAGTTTGAGACATTGGAGG----GA---------CTGAGCTGAAACTAAACTCTGGCCTAAGG---TGACTCTATCAGCTGTGAGTTTTC i rn5.chr9 C 0 C 0 s turTru2.JH486304 26324 100 - 46503 GAAAGAAAGGAGAGAGATGGAGAAATTGTGGGATCTGA--GATGACCATGAGACAAAAGCAACAT-TGGCACAAGGGGTGGTTCACACTAGCAGTGAGTTTTC i turTru2.JH486304 N 0 C 0 s pteVam1.scaffold_7755 17136 94 - 81278 GGGAGAGAGGAGACACACTGAAA-----TAGAATTTGATTGATGGCCACTGGACAGAAGCTTC---TGATTC-AGGGTTTGTCCCCTTTGATGGTGAGTTTTC i pteVam1.scaffold_7755 T 59890 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_3075 71776 35799 + 176633 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e tarSyr1.scaffold_175677 741 238 - 3989 I a score=1910.000000 s mm10.chrUn_GL456372 23731 2 + 28664 AG s rn5.chr9 92362267 2 + 121549591 AG i rn5.chr9 C 0 C 0 s micMur1.scaffold_13052 14684 2 + 20689 AG i micMur1.scaffold_13052 n 35799 I 85 s turTru2.JH486304 26424 2 - 46503 AG i turTru2.JH486304 C 0 C 0 s pteVam1.scaffold_7755 17230 2 - 81278 AG i pteVam1.scaffold_7755 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e tarSyr1.scaffold_175677 741 238 - 3989 I a score=7909.000000 s mm10.chrUn_GL456372 23733 28 + 28664 ACTGTGGTGCCCCCAACTCTCAAAGTGG s rn5.chr9 92362269 28 + 121549591 GTTGTGGTGACCCCAAGTCTCAAAGTGG i rn5.chr9 C 0 C 0 s turTru2.JH486304 26426 28 - 46503 GGTAAGGTGTCCCCAGGTATCAAAGTGG i turTru2.JH486304 C 0 C 0 s pteVam1.scaffold_7755 17232 28 - 81278 GGTAAATTGCCCCCATTTTTCAAAGCGA i pteVam1.scaffold_7755 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14686 85 + 20689 I e myoLuc2.GL429770 26021156 9147 + 30916457 I e tarSyr1.scaffold_175677 741 238 - 3989 I a score=1000.000000 s mm10.chrUn_GL456372 23761 1 + 28664 C s rn5.chr9 92362297 1 + 121549591 C i rn5.chr9 C 0 C 0 s turTru2.JH486304 26454 1 - 46503 C i turTru2.JH486304 C 0 I 1 s myoLuc2.GL429770 26030303 1 + 30916457 C i myoLuc2.GL429770 I 9147 I 9222 s pteVam1.scaffold_7755 17260 1 - 81278 C i pteVam1.scaffold_7755 C 0 I 1 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14686 85 + 20689 I e tarSyr1.scaffold_175677 741 238 - 3989 I a score=-1780.000000 s mm10.chrUn_GL456372 23762 1 + 28664 -A s rn5.chr9 92362298 1 + 121549591 -A i rn5.chr9 C 0 C 0 s turTru2.JH486304 26456 1 - 46503 C- i turTru2.JH486304 I 1 C 0 s pteVam1.scaffold_7755 17262 1 - 81278 T- i pteVam1.scaffold_7755 I 1 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14686 85 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I e tarSyr1.scaffold_175677 741 238 - 3989 I a score=205.000000 s mm10.chrUn_GL456372 23763 1 + 28664 T s rn5.chr9 92362299 1 + 121549591 T i rn5.chr9 C 0 C 0 s tarSyr1.scaffold_175677 979 1 - 3989 C i tarSyr1.scaffold_175677 I 238 N 0 s turTru2.JH486304 26457 1 - 46503 C i turTru2.JH486304 C 0 C 0 s pteVam1.scaffold_7755 17263 1 - 81278 C i pteVam1.scaffold_7755 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14686 85 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=3078.000000 s mm10.chrUn_GL456372 23764 30 + 28664 TGGAAACCATGCAGGGACAATCAGTCTCTC s rn5.chr9 92362300 30 + 121549591 TGGGAAATATGCAGGAGCACTCAGTCTCTC i rn5.chr9 C 0 C 0 s turTru2.JH486304 26458 29 - 46503 TGTAACTCACCCAGATTACA-AGGTACCTC i turTru2.JH486304 C 0 I 2 s pteVam1.scaffold_7755 17264 30 - 81278 TGTAACCTGTTCAGATTAAATAGGCCTCTC i pteVam1.scaffold_7755 C 0 N 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14686 85 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=436.000000 s mm10.chrUn_GL456372 23794 13 + 28664 ----------CCAGTCATTCTTA s rn5.chr9 92362330 12 + 121549591 ----------TCAGGCATTCTT- i rn5.chr9 C 0 C 0 s turTru2.JH486304 26489 23 - 46503 CAAAGGggtttcatgtactctta i turTru2.JH486304 I 2 I 5 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14686 85 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=573.000000 s mm10.chrUn_GL456372 23807 2 + 28664 TC s micMur1.scaffold_13052 14771 2 + 20689 tc i micMur1.scaffold_13052 I 85 I 41 s turTru2.JH486304 26517 2 - 46503 tc i turTru2.JH486304 I 5 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e myoLuc2.GL429770 26030304 9222 + 30916457 I e rn5.chr9 92362342 0 + 121549591 C a score=4897.000000 s mm10.chrUn_GL456372 23809 36 + 28664 TGTTCCCATCTGTAAGTTAATGATCCCCAAACATGA s rn5.chr9 92362342 29 + 121549591 -------ATCTGTAAGTTAATGATCCCCAAACATGA i rn5.chr9 C 0 C 0 s turTru2.JH486304 26519 36 - 46503 aatcaccatctacaatctaatggttcctaaacacac i turTru2.JH486304 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14773 41 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=-86.000000 s mm10.chrUn_GL456372 23845 5 + 28664 A-CTTC s rn5.chr9 92362371 6 + 121549591 ACCTTC i rn5.chr9 C 0 C 0 s micMur1.scaffold_13052 14814 6 + 20689 gtctcc i micMur1.scaffold_13052 I 41 I 23 s turTru2.JH486304 26555 5 - 46503 -atttc i turTru2.JH486304 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=-249.000000 s mm10.chrUn_GL456372 23850 14 + 28664 ACA----CCTGTCAGCTT----- s rn5.chr9 92362377 18 + 121549591 ACACTTGCCTGTCAGCTT----- i rn5.chr9 C 0 C 0 s turTru2.JH486304 26560 16 - 46503 -------cagcccagctctgcct i turTru2.JH486304 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14820 23 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=-2945.000000 s mm10.chrUn_GL456372 23864 11 + 28664 -------------CCTCATCTGCA------------- s rn5.chr9 92362395 11 + 121549591 -------------CCTCAGCTGCA------------- i rn5.chr9 C 0 C 0 s micMur1.scaffold_13052 14843 9 + 20689 -------------attcatcca--------------- i micMur1.scaffold_13052 I 23 I 705 s turTru2.JH486304 26576 37 - 46503 tctaagattccaaactcaattatccaagtgtcagaaa i turTru2.JH486304 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=4899.000000 s mm10.chrUn_GL456372 23875 60 + 28664 GGCC---------------TGGCTATCTTCCTTCACCTCCTCCACAGACTTCTCTATCTGGATGCTTCAAAAACT s rn5.chr9 92362406 75 + 121549591 GGCCTTGGTTACCTTTATGTAGCTCTCTTTATATAGCTCTCTCACAGACTTCTCTATCTGGATGCTTCAAGAACT i rn5.chr9 C 0 C 0 s turTru2.JH486304 26613 58 - 46503 ggcctc-------------tggctaaggtcctgaaggttct----agacttctccacttagatgtctctcagact i turTru2.JH486304 C 0 N 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14852 705 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=34679.000000 s mm10.chrUn_GL456372 23935 573 + 28664 TCATTATGAGGCACTGGCACAATTCCATATTATATCTGACTTGACAGAGGACCTGCCTCCT---CTGCTGTCTCTGTTTCAGCCCGGGACACTATTTCTCCATTCTGAAGCAGGGTTGATACCGACTGCTCCTCCCTAATGTAAAACCATCTCCTATTTACTAAATCTGTCCATTTTTTTTCCAACAGAAAAGGCAAATCAGATCTCTCTAATTCCAAtttattttattttatatatatgaccattttgcttgcaagtataaatatatacaccacatgcttgcctggcatccaaagaagtcccaatagggtgtcaca-gttttgggaacccaaacagcagagcattgtgagctgctacgtggtgctgggaattgactctggatcccctggaagagcaaaatgtgctcttgaactgcggagccatcttctcagtctcACAAATCAGATCTCTTATTTCATCTTAAGACTAAACAAACAGCCCT-----TGATCTCAAATGCCTTTTTTCATTTCATCTTTCCCCATCAAACATACTCTCTAGAAC-TCAACCAGACACTCAGGGAAATGCAGTTGGCAAAGCTT s rn5.chr9 92362481 575 + 121549591 TCAGCATGAAGCGCTTGCACAGTTCCA---CATATCTGAATAGACAGAAGCCCTGTCTCCTGTGCTGGTGTCTCTGTTTCAGCACGGGACAGTATTTCTCCATTCTGAAGCAGGGTTGTTACTGACTGCCTCTCCCTAATGGAAAACACTCTTCCATATATCACATCTGTCCA--TTTTCCCCAACACAAAAGGCAGATCGGATCTCTCTAATTTTAAtttattttattttatatatatgacagttttgcttgcatgaataa--atatacaccacatacttgcctggcatccaaggaagtcacaataaggtgtcaaatcttccgggaactggaattgcacaaagttttaacctgccatgtggtgctggaaattgaccctgtgtcccctgaaagagcaaaaagtgctctt-aaccattgaaccatccttccagacccACAAATCAGATCTCTTATTTCATCTTAAGGCTAAGAAAACAGCCCTGGGGGGGGTCTCTAATGTCTTTTCTCATTTCATCTTGCTCCATCAAACTCACTCTCTTGAACTTCGACCAGACACTCAGAGAAATGTAGTTGACAAAGCTT i rn5.chr9 C 0 I 774 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14852 705 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=20855.000000 s mm10.chrUn_GL456372 24508 345 + 28664 CCTCTCTCCATGGGTTCAGCAACTTCCTGGTGTCAGCAGCATTGGCTCCTTTCCTCCCTGAATACTGCAACTTCCTGTCTGTCTCTCTTGTCCT---AGAGAACAGTGTGTGAAACTTTCTTAGTTATTTTGGTTTCCTGGTTCTTCTTTGATCTATTACCTGTTGTGGGAAATAGGGAGAAATACTTGTGATT---GTTGCTTGGAACAACCTTAATGCTTATGGGTAGAATATG-TGGGTCCTTTATTCATGTCAAAGTATTGGTTACTGGAGAAGGACTGTGTCTTGGTCTTCTGGCTATTTGTGATACACAGTCAATGTTGTCATTTGGATTCCTTGTACTCCTGATt s rn5.chr9 92363830 338 + 121549591 TCTCTCTCCCTGAGTTTAACAGCTTCCTGGTGTCAGTAGGATCCATTCTTTTCCTCCCTGAAGGTTGCAGCTTCCTGCCTGCCTCTCTTGTCCTTCAAGAGAACAGCGTGTGAAACATTCTCAGTTACTTTGATTTCTT---TGTTCTTTGATCCTTTACCTGTCA----------GGGGAAATACTTGTGGCTCCTGCTGTTTGGAACAACCT-AATGCTTATGGGTAGAATATGAGGGGTCCTTTGCTCATGTTGAAGTATTGGTTATTGGGGAAGGACCGTGTTTGGCTTTTCTGGCTGTTTGTGATACACAGTCAATGTTGTCATGTTGATTCCTTGTACTCCTGGTT i rn5.chr9 I 774 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14852 705 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=0.000000 s mm10.chrUn_GL456372 24853 173 + 28664 ttctttatatgagtacactgtagctgtcttcagacacacaccagtagagtgtgcatcagatcccattacagatggttgtgatccaccatgtggtttctgggaattgaactcaggacctatgtgagagcagtcagtgctcttaacctctgagccatctctccagccccCTGATT e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14852 705 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I e rn5.chr9 92364168 0 + 121549591 C a score=10831.000000 s mm10.chrUn_GL456372 25026 159 + 28664 TTCTTATATTCCCTGAACTTCCTGGTTCCACTTGAGCACACTGAGGTATTATCTGGTCCCTCTGCATGGTTGATTGACTTCTTGTTTCTCTTCAGCATCC------------------AAAACTAATGATGAACAAGCAGAGGAGATGCTTAGCCTCCCACAATGCAATGGAGGAGG s rn5.chr9 92364168 177 + 121549591 TTTCTATAGTCCCTGAACTTCCTGGTTCCATTTGAGCACACTGAGGTATTTCCTGGTCCCTCTGCATGGTTTATTGAATCCTTGTTTCTCTTCAGCATCCTACAGTCCTGGAAATACACAAATGAGTGCTGGACAGGCAGAGGAGGTGCCCAGCCTTCCACAGTGCAATGGAGGAGA i rn5.chr9 C 0 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e felCat5.chrC1 212377686 44274 + 221441202 I e micMur1.scaffold_13052 14852 705 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=485.000000 s mm10.chrUn_GL456372 25185 5 + 28664 TGAGT s rn5.chr9 92364345 5 + 121549591 TGAGC i rn5.chr9 C 0 C 0 s felCat5.chrC1 212421960 5 + 221441202 TAATT i felCat5.chrC1 I 44274 C 0 e vicPac1.scaffold_4435 25959 8355 + 111236 I e micMur1.scaffold_13052 14852 705 + 20689 I e myoLuc2.GL429770 26030304 9222 + 30916457 I a score=-2684.000000 s mm10.chrUn_GL456372 25190 3 + 28664 C---TA s rn5.chr9 92364350 6 + 121549591 GAGACT i rn5.chr9 C 0 C 0 s vicPac1.scaffold_4435 34314 3 + 111236 ---GTA i vicPac1.scaffold_4435 I 8355 N 0 s felCat5.chrC1 212421965 3 + 221441202 ---CTG i felCat5.chrC1 C 0 N 0 s myoLuc2.GL429770 26039526 3 + 30916457 ---TTA i myoLuc2.GL429770 I 9222 C 0 e micMur1.scaffold_13052 14852 705 + 20689 I a score=-511.000000 s mm10.chrUn_GL456372 25193 7 + 28664 TCATTT------------G s rn5.chr9 92364356 19 + 121549591 TCACTTGCCAGTCAGCTGG i rn5.chr9 C 0 C 0 s myoLuc2.GL429770 26039529 7 + 30916457 TGATTT------------A i myoLuc2.GL429770 C 0 N 0 e micMur1.scaffold_13052 14852 705 + 20689 I a score=1779.000000 s mm10.chrUn_GL456372 25200 20 + 28664 TGAGTCTGCTAGAGAGAAAG s rn5.chr9 92364375 20 + 121549591 TGAGTCTGCCAGAGAGAAAG i rn5.chr9 C 0 I 2987 e micMur1.scaffold_13052 14852 705 + 20689 I a score=5058.000000 s mm10.chrUn_GL456372 25220 77 + 28664 ACCCCACCCCTTTTCCCATCTGACCCTGTTCTTTACATACTCAGAC--GAAGTCATAGAGGCAGAACCAAGGATCATAA s rn5.chr9 92367382 78 + 121549591 ACCCCACCCCTTTCCCCATCTGACTCTGTTGTTTACATACTCAGAGAAGAAATCATAGAGGCAGCACCAAAGGTCA-AA i rn5.chr9 I 2987 C 0 e micMur1.scaffold_13052 14852 705 + 20689 I a score=-1034.000000 s mm10.chrUn_GL456372 25297 1 + 28664 -A s rn5.chr9 92367460 1 + 121549591 -C i rn5.chr9 C 0 C 0 s micMur1.scaffold_3075 107575 1 + 176633 G- i micMur1.scaffold_3075 I 35799 n 705 a score=2600.000000 s mm10.chrUn_GL456372 25298 35 + 28664 TAATGGGGAATGAGATGTGTAATGAAGGAACAGAT s rn5.chr9 92367461 35 + 121549591 TAATGGGGAATGAGATGTGTAGGGAGGGAGCAAAT i rn5.chr9 C 0 I 3828 e micMur1.scaffold_3075 107576 705 + 176633 I a score=0.000000 s mm10.chrUn_GL456372 25333 1415 + 28664 GCCACCACAGGGCGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN e micMur1.scaffold_3075 107576 705 + 176633 I e rn5.chr9 92367496 3828 + 121549591 I a score=160.000000 s mm10.chrUn_GL456372 26748 3 + 28664 TCG s micMur1.scaffold_153662 188 3 + 955 TTG i micMur1.scaffold_153662 n 705 C 0 e rn5.chr9 92367496 3828 + 121549591 I a score=45837.000000 s mm10.chrUn_GL456372 26751 399 + 28664 AGAAGTAGGTAGTTCAGGGTCTGTAGACTTTGTAAAGCAGAAGTGGTTATGCACAGGCTACCCTGAACCAATCATCCACACAGTTGGAAGGTGACTACTGCTGATTGGCTGGATTTAAAATTTGTACCACCGCTTCTGATTGGGTAGATTTCAGATGCATGGTTAGCAA-GCAGGTAGTCGATGGCTAAATGGGAAGGGTTGGGAATTGGTAACATCAGCAAAGGTTACCTTTGACTGTTTTCAA----------AGCACAGTTTTATTCTTCATCGTGGAAGATAAGAACGTTAAATCTTT--CTTTATGACTACCTGTAGAAAATTAAAGATGGGAAATGAGA-AGTAATGT---AGATGTGGAAAGAGAATGGCTCCATTTGATCTCGGGTGTGATTGCTGGACCAGGCATTC s rn5.chr9 92371324 406 + 121549591 AGAAACAGGTAGTTCAGGGTCTGC---TTTTGCAAAGCAGAAGTGGTTATGCCCAGGCCGCCCTGAAGCAATCATCCAAGCATTTAGAGGGTGACTGCTGCTGATTGGCTGGATTTCAAATTTGTATTGTGGCTTCTGATTGGGTAGATTTCAGAAGCACGGTTAGTGA-GTAGGTAGTCATTGGCTAAATGGGAAGGGTTTGGAATTGGTACAATCAGCCAAGATTACTTTTGACTGTTTTAAAAAAACAAAACAAAACAGTTTTATTCTTCCTCGTGGGAAATAAGAACTTTAAAGCTTT--TTTTACAGCTACCTGTAGTAAATTAAAGGTGGAACGTGGGA-AATAATGT---AGATGCAGAAAGAGAATGGCTCCACTTGATCTTGGGTGTGATGACTGGAGCAGGTTTTC i rn5.chr9 I 3828 C 0 s micMur1.scaffold_153662 191 383 + 955 GGAAGCATGTAGTTCAGGGACTACAGACTTTCAGAAGCAGAAGTTTTTGTGACTAGGTTAATATTTAGCCACAACACAGGCTTTCTGGTGGGGACTGTTGCCAATCAGCTGGCTTTCAGATGTATAGAACTGCCGTGGATGGGCTGGCTTTCAGAAATGTGGTTAGAGATGTAAGTAGTCATTGGTCAATTGGGACTAGTTTA-----------------AATAGTTACTTTTTGCTACTTTCAA----------AGAGCAA-TTAGTTTTTCCT--GGAAAGACAAGAACTCT---TCTTTACTCTCAGGGCTATAAGTGGAAAAATAAAAGTAGGAAAAGGGAGAATGAGGTACAAAACATGGAGAGAGCATAGCTCTCTTGGATCTCAGGTGTGATTATTGGAATAGGTATAT i micMur1.scaffold_153662 C 0 C 0 a score=282.000000 s mm10.chrUn_GL456372 27150 3 + 28664 TGT s rn5.chr9 92371730 3 + 121549591 TGT i rn5.chr9 C 0 C 0 e micMur1.scaffold_153662 574 0 + 955 C a score=0.000000 s mm10.chrUn_GL456372 27153 184 + 28664 TCACAtctttttttttttttttttttttttggtttttctgagacagggtttctctgtgtagccctggctatcctggaactcactttgtagaccaggctggcctcaaactcagaaatctgcctgcctctgcctcccgagtgctgggattaaaggcgtgtgccatcacgcctggccttctgtttac e micMur1.scaffold_153662 574 0 + 955 C e rn5.chr9 92371733 0 + 121549591 C a score=1472.000000 s mm10.chrUn_GL456372 27337 28 + 28664 ttcttaatctttattgttgttgttttta s rn5.chr9 92371733 28 + 121549591 TTCTTAGGTTTCGTTGATGTTGGTTTTA i rn5.chr9 C 0 C 0 e micMur1.scaffold_153662 574 0 + 955 C a score=28217.000000 s mm10.chrUn_GL456372 27365 266 + 28664 tttttCCAAAAAGCAGCTCCTCTTTAGTTCAGACTATC--TGTGCAGT----CAGCAGTGGGGGCTCTCCTCTG-TCTCTGTCTCAGGATCCATGCACAGCTATTTTCTTAGTTAGAACAAGTATACAGGGTGCT---AGATTACGATGGTACCAAGAGAGG--GGTTGGAAAGGCTTGCTTCTGACCTGCTGTTCTATGAGAGACAAGGTGACTTGTGCCCT-AAAATAAT-CGAACAG--ATATAGTTCTGACAAAGGGGGCAAGACAGGAGAGGAAAAA s rn5.chr9 92371761 242 + 121549591 TTTTTC-----------------------CAGACTATC--TGCGCAGTCAGACAGCAGTGGGGGCTCTTCTCTG-TCTCTGTCTCAGGATCCGTGTACAA----TTTTTTGGTTAGGATAACTATCCAGGATGCT---AGGTCACAACTAAACAAAGAAAGG--GGTTGGAAGAGCTTGCTTCTGACCTGCTGTTCTGTGAGAGACAAGGTGAC-CATGCCCT-AAAGTTAT-CAAACAG--ATACAGTTCTGACAAAGAGGGCAAGACAGGAGAGGAAAAA i rn5.chr9 C 0 C 0 s micMur1.scaffold_153662 574 280 + 955 TTTTCCCAAGGAACAGTTTAT-TTTAGCTCAGAATATCAGTGTGCAACATGACAGCCCCGGGGACTCTTTTCTGATCACTGTCTTGGAACCTATGGACAGTAATTTTCTTGTTTCTCATTAGTACCTGGTGAACTAGAAGATCAGCAAGAGAATGAGGAAGGAAAATCAGAAGAGCTTACTTCTAGCCCAGCGTGCTATGATGAACCAGGTAAG-TATGCCTTAAAAATAATACAAGCAGAAACACAGGTCTGATAACGAGAAAAAGACAGGGGAGGGAAAA i micMur1.scaffold_153662 C 0 n 0 a score=6153.000000 s mm10.chrUn_GL456372 27631 114 + 28664 TTAAAAACAGGAACTGAAAGAAGGG----AAATGTAAAAATATTTTGGAGGAACAAGAGAAGGGG----------------------TGGGATCTATACATTTACAGGAAGGTCATGTGTCACccctggggggaggggca s rn5.chr9 92372003 136 + 121549591 TTAAAAGCAGAAACTGAAAGACGGGGGGAGAATGTAAAAATATTTTGGAGAAACAAGAAAAGGGGTGGGAAAAAAAAGAAAAAGGGATGGGACCAATAGACTTACAAAAAGGCCATGTGTCACCCTT----GGAGGGACA i rn5.chr9 C 0 C 0 e micMur1.scaffold_153662 854 0 + 955 I a score=-117.000000 s mm10.chrUn_GL456372 27745 2 + 28664 ga s rn5.chr9 92372139 2 + 121549591 AT i rn5.chr9 C 0 C 0 s papHam1.Contig311851 5571 2 + 7937 GA i papHam1.Contig311851 N 0 N 0 e micMur1.scaffold_153662 854 0 + 955 I a score=24952.000000 s mm10.chrUn_GL456372 27747 403 + 28664 agaagatcaatgttcaaggctaccttgatcttgagtaaattcaaggtcaacctggaaaattaggtgacaccctgtctaaaactgaaacattaaacaaaaCAAAActgagggtgtagctcactggtagactgcttgtcttgcacaaatgagaccctgagcttggtccccagtattacaaaaTTAGATAACAAACCTATGTACACCCACAATTTTGGCCCAAGAGCACAGCAACCCACACATGAAAAGAAGTGTTCCTGTGTCATGTGTTCCCCAACATATGTGCCAGAAAACCTGGATGCAAGGATGGGAAGCAGCCAAGGAGGTAAGGAGTAGATAAGTCTGCCCAGAGGTCCTGGGTTAGGGATGGCTCAGTGAGAACCCATAGCTTC--------TAGTCCGGCCTAGT s rn5.chr9 92372141 394 + 121549591 AGAAGATCAATgttcaaggctagcttgggctagagtgagtttaagggcaaccagaaaaattaggtggtaccctgtctaaaaaTGCAACATTAAAAAGTAT----CCAAGGGTGTAGCTC--------ACTGCTTGCTTTGCACAAATGAG-CCCTGAGCTTGGTACCCAGTATCACAAAATTAAATAACAAACTTACACACACCTACAATTTTGGCCCAGGAGCACAACAACCCACAAGTGAAGAGAGGTGTACCTGTGTCATGTGTTCCCCAACATATGTGCCAGAAGACCTAGAAGCAAGGATGGGAAGCAGTCAAGGAGGTAAGGAATAGATAAG--TGCCCAGGGGTCATGGGTTAGGGATGGCTTGGTGAGTACCC--AGCTCCGGATAGAGTAATAGCTTCTGGT i rn5.chr9 C 0 C 0 e micMur1.scaffold_153662 854 0 + 955 I a score=1647.000000 s mm10.chrUn_GL456372 28150 8 + 28664 CCAGTCCA s rn5.chr9 92372535 8 + 121549591 CTAGTCCA i rn5.chr9 C 0 C 0 s micMur1.scaffold_13052 15557 8 + 20689 CCAGGCCA i micMur1.scaffold_13052 I 705 I 13 a score=1289.000000 s mm10.chrUn_GL456372 28158 18 + 28664 TCCAAGAATCCAGTCCT-C s rn5.chr9 92372543 19 + 121549591 TCCAAGAATCCAGTCCTCC i rn5.chr9 C 0 C 0 e micMur1.scaffold_13052 15565 13 + 20689 I a score=11090.000000 s mm10.chrUn_GL456372 28176 97 + 28664 TGCATTTTCTTG-----------TTGGGAGCTGGAGAGAAGCAAGAAACTTTTACAGAGCCATGTGGGAGGAGATGGAGTCAGTTGGTCACATGTAGATGAAGTAGAA s rn5.chr9 92372562 95 + 121549591 TGTACTTCCTTG-----------TT-GGAGCTGGAGAGAAGCAAGAAACATTTCCAGAGCCACGTGGGAGGAGA-GGAGTCAGTTGGTCCCATGTAAATGATGAAGAA i rn5.chr9 C 0 C 0 s micMur1.scaffold_13052 15578 108 + 20689 TGCCTTTGCTTGGCCTGACCCTTTTGGGAACTGCAGGGAGGCAGGAGATCAATATAGAGCCATGTTTAACAGGATGGGCTCTCGTGGTTATGTAGGGATGATGTAGAA i micMur1.scaffold_13052 I 13 N 0 a score=20729.000000 s mm10.chrUn_GL456372 28273 391 + 28664 GAAATGTACTCttttttaattcattcattaatgcattcattcacaccccaaatac--tgcactcccagtcccagtcccctacccccttagagtccttccttcatccccttctccttcgcctctgagagagtgaagatctcccccttatgagtatccctcccactgtagtgtatcaagtctctacaggattaggcacatcttctccccctgaggccagacaaggcagtcctctggtacatttgtcctgggagccctggtccagctcctataggctctttggttggtagctcagtctctgagagctcccaggcctctggtt-------tactgttggtcttcctgtggagtttctacccccttcagggcctccaatccttccccaaacacttccataaggat s rn5.chr9 92372657 364 + 121549591 GAAATGCAttgtt-----attaattaattaat--aattaataataccccaaatgctgtgcccccccagtcccagtcc----ccacctcag------------attcccttctcctttgcctctgagagggtagaa---cctcccctcccagtatccccca------agtgtatcaagtctctgcaggattaggcacatct----cccccgaggccagacaaggcggccctctgctacatatgtcccaggagcctcggtccagctcctatatgctctttggttggtgactcagtctctgagagctcccagggttctggattagttcatactgttggtcttcctgtggagtttctatccccttcagggccttcaatccttccccaaactctaccgtaacggt i rn5.chr9 C 0 N 0