##maf version=1 scoring=roast.v3.3 a score=823.000000 s mm10.chrUn_GL456394 134 68 + 24323 cccattctcttcctg-----gccctggcattcccctgtactggggcatttaatctttgcaagaccaagggcat s ornAna1.Ultra173 2778330 57 - 3935469 CGCATTTTCTTCTTGAATTGGTCTTGGGACTCCTTTCTATCGAGGCAGCAATTCTTT---------------- i ornAna1.Ultra173 N 0 C 0 a score=191.000000 s mm10.chrUn_GL456394 202 2 + 24323 cA s oviAri1.chr6 47689131 2 - 129067040 CA i oviAri1.chr6 N 0 I 2235 e ornAna1.Ultra173 2778387 0 - 3935469 C a score=273.000000 s mm10.chrUn_GL456394 204 1 + 24323 A s rn5.chr14 30818090 1 + 115151701 A i rn5.chr14 N 0 C 0 s dasNov3.JH567186 7451871 1 + 8154233 A i dasNov3.JH567186 N 0 C 0 e oviAri1.chr6 47689133 2235 - 129067040 I e ornAna1.Ultra173 2778387 0 - 3935469 C a score=3801.000000 s mm10.chrUn_GL456394 205 11 + 24323 TAATATTTTCA s rn5.chr14 30818091 11 + 115151701 TAGTATTTTCA i rn5.chr14 C 0 C 0 s proCap1.scaffold_41577 6772 11 - 16734 TAATATATTCT i proCap1.scaffold_41577 N 0 C 0 s dasNov3.JH567186 7451872 11 + 8154233 CAATATGTTCT i dasNov3.JH567186 C 0 C 0 s ornAna1.Ultra173 2778387 5 - 3935469 ------TTTCA i ornAna1.Ultra173 C 0 C 0 e oviAri1.chr6 47689133 2235 - 129067040 I a score=849.000000 s mm10.chrUn_GL456394 216 2 + 24323 AG s rn5.chr14 30818102 2 + 115151701 AG i rn5.chr14 C 0 C 0 s micMur1.scaffold_3417 130721 2 - 188344 GG i micMur1.scaffold_3417 N 0 C 0 s proCap1.scaffold_41577 6783 1 - 16734 -G i proCap1.scaffold_41577 C 0 I 1 s dasNov3.JH567186 7451883 1 + 8154233 -G i dasNov3.JH567186 C 0 I 1 e oviAri1.chr6 47689133 2235 - 129067040 I e ornAna1.Ultra173 2778392 0 - 3935469 C a score=1365.000000 s mm10.chrUn_GL456394 218 1 + 24323 A s rn5.chr14 30818104 1 + 115151701 A i rn5.chr14 C 0 C 0 s micMur1.scaffold_3417 130723 1 - 188344 A i micMur1.scaffold_3417 C 0 I 1763 s pteVam1.scaffold_5921 13931 1 - 103762 A i pteVam1.scaffold_5921 N 0 C 0 s proCap1.scaffold_41577 6785 1 - 16734 A i proCap1.scaffold_41577 I 1 C 0 s dasNov3.JH567186 7451885 1 + 8154233 A i dasNov3.JH567186 I 1 C 0 e oviAri1.chr6 47689133 2235 - 129067040 I e ornAna1.Ultra173 2778392 0 - 3935469 C a score=535.000000 s mm10.chrUn_GL456394 219 10 + 24323 TCTTCATTTT s rn5.chr14 30818105 10 + 115151701 TCTTCACTGT i rn5.chr14 C 0 C 0 s pteVam1.scaffold_5921 13932 9 - 103762 -CCTTATTTC i pteVam1.scaffold_5921 C 0 I 1 s proCap1.scaffold_41577 6786 8 - 16734 -AC-TGTTTT i proCap1.scaffold_41577 C 0 I 2 s dasNov3.JH567186 7451886 9 + 8154233 -TCTTATTTT i dasNov3.JH567186 C 0 I 2 s ornAna1.Ultra173 2778392 10 - 3935469 TCTTGAGATT i ornAna1.Ultra173 C 0 C 0 e micMur1.scaffold_3417 130724 1763 - 188344 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-316.000000 s mm10.chrUn_GL456394 229 9 + 24323 GCTGTAACT s rn5.chr14 30818115 9 + 115151701 GCTATAACT i rn5.chr14 C 0 C 0 s felCat5.chrB1 157743539 9 + 205241052 GCTGTAATT i felCat5.chrB1 N 0 C 0 s pteVam1.scaffold_5921 13942 9 - 103762 GTTGTATTT i pteVam1.scaffold_5921 I 1 C 0 s proCap1.scaffold_41577 6796 8 - 16734 ACTATACT- i proCap1.scaffold_41577 I 2 C 0 s dasNov3.JH567186 7451897 8 + 8154233 ATTTAATT- i dasNov3.JH567186 I 2 C 0 s ornAna1.Ultra173 2778402 8 - 3935469 -CTGAATGT i ornAna1.Ultra173 C 0 C 0 e micMur1.scaffold_3417 130724 1763 - 188344 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=4347.000000 s mm10.chrUn_GL456394 238 2 + 24323 CG s rn5.chr14 30818124 2 + 115151701 GG i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1228 2 - 46848 GG i papHam1.scaffold18774 N 0 C 0 s tarSyr1.scaffold_307668 1020 2 - 1735 GG i tarSyr1.scaffold_307668 N 0 C 0 s vicPac1.scaffold_1741 243259 1 - 251247 -G i vicPac1.scaffold_1741 N 0 I 359 s turTru2.JH487638 42291 1 - 56521 -G i turTru2.JH487638 N 0 I 596 s felCat5.chrB1 157743548 2 + 205241052 GG i felCat5.chrB1 C 0 C 0 s myoLuc2.GL429902 2533599 1 - 3767281 -G i myoLuc2.GL429902 N 0 I 123 s pteVam1.scaffold_5921 13951 1 - 103762 -G i pteVam1.scaffold_5921 C 0 I 1 s proCap1.scaffold_41577 6804 2 - 16734 CG i proCap1.scaffold_41577 C 0 C 0 s dasNov3.JH567186 7451905 2 + 8154233 AG i dasNov3.JH567186 C 0 C 0 s ornAna1.Ultra173 2778410 2 - 3935469 TG i ornAna1.Ultra173 C 0 C 0 e micMur1.scaffold_3417 130724 1763 - 188344 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=13124.000000 s mm10.chrUn_GL456394 240 9 + 24323 TTCTCTGAA s rn5.chr14 30818126 9 + 115151701 TTTTCTGAA i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1230 9 - 46848 TCTTCTGTA i papHam1.scaffold18774 C 0 C 0 s tarSyr1.scaffold_307668 1022 9 - 1735 TCTTCTGAA i tarSyr1.scaffold_307668 C 0 C 0 s felCat5.chrB1 157743550 9 + 205241052 TCCTCTGAA i felCat5.chrB1 C 0 C 0 s pteVam1.scaffold_5921 13953 6 - 103762 ---TCCGAA i pteVam1.scaffold_5921 I 1 I 659 s proCap1.scaffold_41577 6806 9 - 16734 CTCTATGGA i proCap1.scaffold_41577 C 0 C 0 s dasNov3.JH567186 7451907 9 + 8154233 TCTTTTGAA i dasNov3.JH567186 C 0 I 352 s ornAna1.Ultra173 2778412 9 - 3935469 CTCTCGGTA i ornAna1.Ultra173 C 0 C 0 e myoLuc2.GL429902 2533600 123 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e micMur1.scaffold_3417 130724 1763 - 188344 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=2285.000000 s mm10.chrUn_GL456394 249 45 + 24323 TGCTT-GCTATTTTTGTGAC----TGTGAGTC-T--------TGTAAAGGGGCCAATTC s rn5.chr14 30818135 51 + 115151701 TGTTTTGCTATTTCTGTGAC----TGAGAGTC-TCATCT---TGCAAAGGTGCTAATTT i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1239 52 - 46848 TTCTT-GTTCTTCCTATGAC----CATGATTCATTTTTT--ATGAAAAGATACTAAAAG i papHam1.scaffold18774 C 0 I 3 s tarSyr1.scaffold_307668 1031 51 - 1735 TACTT-GAAATTTCTACTTC----CATGACTC-TTTTTG--ATGTAAAGATGCTAAATA i tarSyr1.scaffold_307668 C 0 I 345 s felCat5.chrB1 157743559 45 + 205241052 --------TATTTGTATGGC----CGTGATTC-TCTTTCTCATGCAAA-ATGCTAAATG i felCat5.chrB1 C 0 C 0 s proCap1.scaffold_41577 6815 49 - 16734 TACTT-GGTATTTCTCTGG-----TGTGATTC-TTTTTG---TCCAAAGGTGCTAAATG i proCap1.scaffold_41577 C 0 C 0 s ornAna1.Ultra173 2778421 40 - 3935469 --------TATACCTTTGTCACTTTGTACTTC-TAATTC-GATTTAATGA--------- i ornAna1.Ultra173 C 0 C 0 e myoLuc2.GL429902 2533600 123 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-8946.000000 s mm10.chrUn_GL456394 294 43 + 24323 TTGTTATGCCTGCC--------------TACCCATT------CTCTGCCATCCTGCATTGCTA---- s rn5.chr14 30818186 38 + 115151701 TTGTTATGCCT------------------ACCCATT------CACTGCCATC-TGCATTTCTA---- i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1294 32 - 46848 TTTGTATCCCT-------------------------------TTGTGTAATCCTACATTTCTA---- i papHam1.scaffold18774 I 3 C 0 s felCat5.chrB1 157743604 37 + 205241052 TTATTGGGCAT------------------ATTCCTT------TGCT--CATCTTATATTTTGA---- i felCat5.chrB1 C 0 C 0 s proCap1.scaffold_41577 6864 44 - 16734 TCGTACAGTAC------------------ATTCCTTTGGAAATACCGATATC-TCTATTTTTA---- i proCap1.scaffold_41577 C 0 I 23 s ornAna1.Ultra173 2778461 61 - 3935469 TTATTATACCTGTCATAGTTAGTGCAAACACTAATT------TAATGTTCCTTAGAAGTTCTTGCTA i ornAna1.Ultra173 C 0 C 0 e myoLuc2.GL429902 2533600 123 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=163.000000 s mm10.chrUn_GL456394 337 3 + 24323 GGT s rn5.chr14 30818224 3 + 115151701 GGT i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1326 3 - 46848 ATT i papHam1.scaffold18774 C 0 C 0 s felCat5.chrB1 157743641 3 + 205241052 ACt i felCat5.chrB1 C 0 I 4 s proCap1.scaffold_41577 6931 3 - 16734 CAT i proCap1.scaffold_41577 I 23 C 0 s choHof1.scaffold_92287 4182 3 - 8037 GAT i choHof1.scaffold_92287 N 0 C 0 s ornAna1.Ultra173 2778522 3 - 3935469 ACT i ornAna1.Ultra173 C 0 C 0 e myoLuc2.GL429902 2533600 123 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=3276.000000 s mm10.chrUn_GL456394 340 1 + 24323 T s rn5.chr14 30818227 1 + 115151701 T i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1329 1 - 46848 T i papHam1.scaffold18774 C 0 I 17 s tupBel1.scaffold_120217.1-71828 21254 1 - 71828 T i tupBel1.scaffold_120217.1-71828 N 0 I 4918 s felCat5.chrB1 157743648 1 + 205241052 t i felCat5.chrB1 I 4 C 0 s myoLuc2.GL429902 2533723 1 - 3767281 T i myoLuc2.GL429902 I 123 C 0 s proCap1.scaffold_41577 6934 1 - 16734 T i proCap1.scaffold_41577 C 0 C 0 s choHof1.scaffold_92287 4185 1 - 8037 T i choHof1.scaffold_92287 C 0 C 0 s ornAna1.Ultra173 2778525 1 - 3935469 T i ornAna1.Ultra173 C 0 C 0 e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=2397.000000 s mm10.chrUn_GL456394 341 7 + 24323 ACCTATT s rn5.chr14 30818228 7 + 115151701 ACCTGTT i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1347 7 - 46848 ACTTGTT i papHam1.scaffold18774 I 17 C 0 s felCat5.chrB1 157743649 7 + 205241052 aaatatt i felCat5.chrB1 C 0 I 1753 s myoLuc2.GL429902 2533724 7 - 3767281 CAGTATT i myoLuc2.GL429902 C 0 I 3 s proCap1.scaffold_41577 6935 7 - 16734 ATCAAAA i proCap1.scaffold_41577 C 0 C 0 s choHof1.scaffold_92287 4186 7 - 8037 ATCTGTC i choHof1.scaffold_92287 C 0 C 0 s ornAna1.Ultra173 2778526 7 - 3935469 ACTTATT i ornAna1.Ultra173 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-206.000000 s mm10.chrUn_GL456394 348 2 + 24323 GG s rn5.chr14 30818235 2 + 115151701 GA i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1354 2 - 46848 AG i papHam1.scaffold18774 C 0 I 14 s myoLuc2.GL429902 2533734 1 - 3767281 -G i myoLuc2.GL429902 I 3 I 1 s proCap1.scaffold_41577 6942 2 - 16734 TA i proCap1.scaffold_41577 C 0 C 0 s choHof1.scaffold_92287 4193 2 - 8037 AG i choHof1.scaffold_92287 C 0 I 12 s ornAna1.Ultra173 2778533 1 - 3935469 -A i ornAna1.Ultra173 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-69.000000 s mm10.chrUn_GL456394 350 1 + 24323 A s rn5.chr14 30818237 1 + 115151701 C i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2533736 1 - 3767281 A i myoLuc2.GL429902 I 1 C 0 s proCap1.scaffold_41577 6944 1 - 16734 A i proCap1.scaffold_41577 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4195 12 - 8037 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1356 14 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I e ornAna1.Ultra173 2778534 0 - 3935469 C a score=910.000000 s mm10.chrUn_GL456394 351 1 + 24323 A s rn5.chr14 30818238 1 + 115151701 A i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2533737 1 - 3767281 A i myoLuc2.GL429902 C 0 C 0 s proCap1.scaffold_41577 6945 1 - 16734 A i proCap1.scaffold_41577 C 0 I 1 s choHof1.scaffold_92287 4207 1 - 8037 A i choHof1.scaffold_92287 I 12 I 2005 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1356 14 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I e ornAna1.Ultra173 2778534 0 - 3935469 C a score=600.000000 s mm10.chrUn_GL456394 352 1 + 24323 G s rn5.chr14 30818239 1 + 115151701 G i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1370 1 - 46848 G i papHam1.scaffold18774 I 14 C 0 s myoLuc2.GL429902 2533738 1 - 3767281 G i myoLuc2.GL429902 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 6946 1 - 16734 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I e ornAna1.Ultra173 2778534 0 - 3935469 C a score=-326.000000 s mm10.chrUn_GL456394 353 3 + 24323 TTT s rn5.chr14 30818240 3 + 115151701 CTT i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1371 1 - 46848 T-- i papHam1.scaffold18774 C 0 I 219 s myoLuc2.GL429902 2533739 3 - 3767281 TTT i myoLuc2.GL429902 C 0 I 2 s proCap1.scaffold_41577 6947 3 - 16734 TTT i proCap1.scaffold_41577 I 1 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I e ornAna1.Ultra173 2778534 0 - 3935469 C a score=-829.000000 s mm10.chrUn_GL456394 356 15 + 24323 TAACAATGGTTTGAT s rn5.chr14 30818243 15 + 115151701 TATCAATAGTTAGAT i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2533744 15 - 3767281 TTTTAATGATAAAAA i myoLuc2.GL429902 I 2 C 0 s proCap1.scaffold_41577 6950 11 - 16734 ---TACTTATAAAA- i proCap1.scaffold_41577 C 0 I 240 s ornAna1.Ultra173 2778534 15 - 3935469 TAATAGTGCATGAAG i ornAna1.Ultra173 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1372 219 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=4238.000000 s mm10.chrUn_GL456394 371 47 + 24323 GGAATTCTTCCTGAATCATTTTCTTATTTCTAAATAAAAGGAAGAAA s rn5.chr14 30818258 47 + 115151701 GGAATTCTTGCTGAATTATTTTCTTATTTCTAAATAAAAGGAGTAGA i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2533759 47 - 3767281 TAAATTCTTGCTCATTTACTATTGTATTTCtaagccagtcagagaaa i myoLuc2.GL429902 C 0 I 1570 s ornAna1.Ultra173 2778549 42 - 3935469 -AAAAATCTCCTCAGTTTTTCACTTCCCTCTTTGGGAAAGCCA---- i ornAna1.Ultra173 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1372 219 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 6961 240 - 16734 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=1093.000000 s mm10.chrUn_GL456394 418 54 + 24323 AAAGTACACATGCATAGAAATAAAGCTTCTTTTGATCCTTCTTTTTCTCCTTTA s rn5.chr14 30818305 54 + 115151701 AAAATATACATGCATAAAAAGAAAGCTTCTTTTGATCCTTCTTTTACTCCTTCA i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778591 36 - 3935469 -----CTAC-------------TAACTTCTTCAAGGGTTATTGCAAATCTAAAT i ornAna1.Ultra173 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2533806 1570 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1372 219 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 6961 240 - 16734 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=8700.000000 s mm10.chrUn_GL456394 472 65 + 24323 AATACTTATAGAAAAATGCATCTTTTTACACTGTCTCCTTATATAA-ATA---TCTTCCTATGTAGCTA--------------------- s rn5.chr14 30818359 66 + 115151701 AATACTTATAGGAAAATGCATCTTTTTACACTGTCTCCTTATATCATACA---TCTTCCTGTGTAATTA--------------------- i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778627 65 - 3935469 AATATTCATGGAAGAATACATCTTTTTACCCTTTATATTTTTGGCT-CCA---ATCACATCTGCAATTG--------------------- i ornAna1.Ultra173 C 0 I 2 s chrPic1.JH584864 406719 82 + 2434595 AACATTTATAGAAGAATCCGTCTTTCCACA-------GTCATGTCC-ACAGGGGCTACATCTGCAATTACGTGCCTCAAACATGCAACAG i chrPic1.JH584864 N 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2533806 1570 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1372 219 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 6961 240 - 16734 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=910.000000 s mm10.chrUn_GL456394 537 1 + 24323 T s rn5.chr14 30818425 1 + 115151701 T i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1591 1 - 46848 T i papHam1.scaffold18774 I 219 I 22 s ornAna1.Ultra173 2778694 1 - 3935469 T i ornAna1.Ultra173 I 2 C 0 s chrPic1.JH584864 406801 1 + 2434595 T i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2533806 1570 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 6961 240 - 16734 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-1062.000000 s mm10.chrUn_GL456394 538 5 + 24323 GCCTT--- s rn5.chr14 30818426 5 + 115151701 GACTT--- i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778695 5 - 3935469 GATTG--- i ornAna1.Ultra173 C 0 I 1 s chrPic1.JH584864 406802 5 + 2434595 ---TTCTG i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2533806 1570 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243260 359 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1592 22 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 6961 240 - 16734 I e dasNov3.JH567186 7451916 352 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=54.000000 s mm10.chrUn_GL456394 543 1 + 24323 T s rn5.chr14 30818431 1 + 115151701 A i rn5.chr14 C 0 C 0 s vicPac1.scaffold_1741 243619 1 - 251247 T i vicPac1.scaffold_1741 I 359 I 1641 s dasNov3.JH567186 7452268 1 + 8154233 T i dasNov3.JH567186 I 352 I 280 s chrPic1.JH584864 406807 1 + 2434595 T i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2533806 1570 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1592 22 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 6961 240 - 16734 I e oviAri1.chr6 47689133 2235 - 129067040 I e ornAna1.Ultra173 2778700 1 - 3935469 I a score=-1294.000000 s mm10.chrUn_GL456394 544 1 + 24323 -A s rn5.chr14 30818432 1 + 115151701 -A i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2535376 1 - 3767281 -A i myoLuc2.GL429902 I 1570 I 304 s ornAna1.Ultra173 2778701 1 - 3935469 -A i ornAna1.Ultra173 I 1 C 0 s chrPic1.JH584864 406808 1 + 2434595 T- i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1592 22 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 6961 240 - 16734 I e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=1094.000000 s mm10.chrUn_GL456394 545 13 + 24323 AAAAGAATCTTTT s rn5.chr14 30818433 13 + 115151701 AAAAGAAACTCTT i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778702 13 - 3935469 AAAGGAAATGGTT i ornAna1.Ultra173 C 0 C 0 s chrPic1.JH584864 406809 3 + 2434595 ----------ATT i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1592 22 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 6961 240 - 16734 I e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=639.000000 s mm10.chrUn_GL456394 558 8 + 24323 TAAAATAC s rn5.chr14 30818446 8 + 115151701 TGAAATAC i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1614 3 - 46848 -----TAT i papHam1.scaffold18774 I 22 I 272 s ornAna1.Ultra173 2778715 8 - 3935469 TTTATTAC i ornAna1.Ultra173 C 0 C 0 s chrPic1.JH584864 406812 8 + 2434595 TAAACCCC i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 6961 240 - 16734 I e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-608.000000 s mm10.chrUn_GL456394 566 5 + 24323 ACTTT- s rn5.chr14 30818454 5 + 115151701 GCTTT- i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778723 3 - 3935469 --GTT- i ornAna1.Ultra173 C 0 I 2 s chrPic1.JH584864 406820 5 + 2434595 -CTTTT i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 6961 240 - 16734 I e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-1476.000000 s mm10.chrUn_GL456394 571 8 + 24323 ACATTCCA-- s rn5.chr14 30818459 8 + 115151701 ATATCCCA-- i rn5.chr14 C 0 C 0 s proCap1.scaffold_41577 7201 6 - 16734 TCACCC---- i proCap1.scaffold_41577 I 240 C 0 s ornAna1.Ultra173 2778728 8 - 3935469 CCACTCTT-- i ornAna1.Ultra173 I 2 C 0 s chrPic1.JH584864 406825 10 + 2434595 TTACTCCTTG i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1082 345 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=476.000000 s mm10.chrUn_GL456394 579 1 + 24323 C s rn5.chr14 30818467 1 + 115151701 C i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_307668 1427 1 - 1735 C i tarSyr1.scaffold_307668 I 345 I 225 s ornAna1.Ultra173 2778736 1 - 3935469 C i ornAna1.Ultra173 C 0 I 8 s chrPic1.JH584864 406835 1 + 2434595 T i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7207 0 - 16734 C e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=1229.000000 s mm10.chrUn_GL456394 580 4 + 24323 TTTA s rn5.chr14 30818468 4 + 115151701 CTTA i rn5.chr14 C 0 C 0 s proCap1.scaffold_41577 7207 3 - 16734 -TCA i proCap1.scaffold_41577 C 0 I 208 s ornAna1.Ultra173 2778745 4 - 3935469 TTCA i ornAna1.Ultra173 I 8 C 0 s chrPic1.JH584864 406836 4 + 2434595 TTCT i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1428 225 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=6677.000000 s mm10.chrUn_GL456394 584 36 + 24323 AAAACCCAGTCAACTCAGAAAATATTCCTCATATTA s rn5.chr14 30818472 36 + 115151701 AAAACCCAGTCAACTCAGAAAATATCCCCAGTATTA i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778749 36 - 3935469 AAAATTCCATCAACTCAGTGCCTGTCCCAGGCATTA i ornAna1.Ultra173 C 0 C 0 s chrPic1.JH584864 406840 35 + 2434595 GAAATCTCATCAGTTTATAAAACA-CCCTGGCATGT i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1428 225 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7210 208 - 16734 I e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-913.000000 s mm10.chrUn_GL456394 620 5 + 24323 AAAGG- s rn5.chr14 30818508 5 + 115151701 AAAGC- i rn5.chr14 C 0 C 0 s macEug2.GL125620 21896 4 - 57395 -GAAC- i macEug2.GL125620 N 0 I 8234 s ornAna1.Ultra173 2778785 4 - 3935469 -GAAC- i ornAna1.Ultra173 C 0 I 1 s chrPic1.JH584864 406875 5 + 2434595 -AGACA i chrPic1.JH584864 C 0 C 0 e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1428 225 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7210 208 - 16734 I e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=29141.000000 s mm10.chrUn_GL456394 625 164 + 24323 TACAATTCTTTCTGTT-------ATCAGTAAATCCCTTATATTTTTCAATGTACTACAATAATCTCCTTTCTTCCTCAGACGGTCTATAGAAGAGCATCTTTTACATTCAAGGATATATCTTAAACCAGTTCTAGC----CATGAACCAGTTT---GCTAAGGATTTACCTGAAGCTG s rn5.chr14 30818513 159 + 115151701 TGCAATTCTCTCTGCT-------ATTCGTAAATCCCTCATATTTTTCATTGTACTGCAATAATCTTCTTTCTTCCCCAGACTGT-----AGAGAATATCTTTTCTATTAAAGAATATACCCTAAGCCAGTTTTAGC----CTTGAACCAGTTT---GCTAAAGATTTACATGAAGCTG i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778790 163 - 3935469 -GAAACCTGAGTTGCTTA-----GGGTGTAAATCTCTTTTATTTCTCAATGTATTATAATAATCCCTTCCCTTACTCAGTCTGTCTACACAAGTACATCATTTATATTCAAGGATACACTTTAAATCAATTTTAGTTGGGCACGAACCCGT---------ATGATTTACCTGTGACTG i ornAna1.Ultra173 I 1 C 0 s chrPic1.JH584864 406880 172 + 2434595 TGC-ATTTTTCTTGCTTATGAATTTCAGTCAATCCCTTTTATTCTTCAGTCTATTATAATAATC-CCTTTCTCACTCAGCATGCCTACTAAAGAACACTGTTTATATTCAAGGGCACACCTGGAATACATTTTAGG----TGGGCACCAAAATACAGCCTGCAATATGCCTTTGACAG i chrPic1.JH584864 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1428 225 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7210 208 - 16734 I e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-1109.000000 s mm10.chrUn_GL456394 789 3 + 24323 TCA s rn5.chr14 30818672 3 + 115151701 CCA i rn5.chr14 C 0 C 0 s proCap1.scaffold_41577 7418 2 - 16734 GC- i proCap1.scaffold_41577 I 208 I 9 s ornAna1.Ultra173 2778953 3 - 3935469 CTA i ornAna1.Ultra173 C 0 C 0 s chrPic1.JH584864 407052 3 + 2434595 TCA i chrPic1.JH584864 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1428 225 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-1242.000000 s mm10.chrUn_GL456394 792 3 + 24323 CAT s rn5.chr14 30818675 3 + 115151701 TGT i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778956 2 - 3935469 CA- i ornAna1.Ultra173 C 0 I 1 s chrPic1.JH584864 407055 2 + 2434595 CA- i chrPic1.JH584864 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1428 225 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7420 9 - 16734 I e dasNov3.JH567186 7452269 280 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-1107.000000 s mm10.chrUn_GL456394 795 1 + 24323 -T s rn5.chr14 30818678 1 + 115151701 -T i rn5.chr14 C 0 C 0 s dasNov3.JH567186 7452549 1 + 8154233 -t i dasNov3.JH567186 I 280 I 1832 s chrPic1.JH584864 407057 1 + 2434595 G- i chrPic1.JH584864 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1428 225 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7420 9 - 16734 I e oviAri1.chr6 47689133 2235 - 129067040 I e ornAna1.Ultra173 2778958 1 - 3935469 I a score=99.000000 s mm10.chrUn_GL456394 796 5 + 24323 TTAAT s rn5.chr14 30818679 5 + 115151701 TTAAT i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778959 4 - 3935469 -GAAA i ornAna1.Ultra173 I 1 I 1 s chrPic1.JH584864 407058 5 + 2434595 GTGAC i chrPic1.JH584864 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1428 225 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7420 9 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=1663.000000 s mm10.chrUn_GL456394 801 4 + 24323 AAAC s rn5.chr14 30818684 4 + 115151701 AAAA i rn5.chr14 C 0 C 0 s proCap1.scaffold_41577 7429 4 - 16734 AAAC i proCap1.scaffold_41577 I 9 I 98 s ornAna1.Ultra173 2778964 4 - 3935469 AGGC i ornAna1.Ultra173 I 1 C 0 s chrPic1.JH584864 407063 4 + 2434595 AAGC i chrPic1.JH584864 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42292 596 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1428 225 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=1758.000000 s mm10.chrUn_GL456394 805 3 + 24323 ATT s rn5.chr14 30818688 3 + 115151701 ATT i rn5.chr14 C 0 C 0 s turTru2.JH487638 42888 2 - 56521 -TT i turTru2.JH487638 I 596 I 1544 s ornAna1.Ultra173 2778968 3 - 3935469 ACT i ornAna1.Ultra173 C 0 C 0 s chrPic1.JH584864 407067 3 + 2434595 ATT i chrPic1.JH584864 C 0 N 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1428 225 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7433 98 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=300.000000 s mm10.chrUn_GL456394 808 1 + 24323 G s rn5.chr14 30818691 1 + 115151701 G i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778971 1 - 3935469 G i ornAna1.Ultra173 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_307668 1428 225 - 1735 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7433 98 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=29.000000 s mm10.chrUn_GL456394 809 1 + 24323 T s rn5.chr14 30818692 1 + 115151701 T i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_307668 1653 1 - 1735 C i tarSyr1.scaffold_307668 I 225 N 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7433 98 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I e ornAna1.Ultra173 2778972 0 - 3935469 C a score=1884.000000 s mm10.chrUn_GL456394 810 18 + 24323 TCTAATGAATTTTTGGCT s rn5.chr14 30818693 18 + 115151701 ACTAATCAATTTTTAGAT i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778972 18 - 3935469 GCTAACGAATTTCATACT i ornAna1.Ultra173 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 1617 272 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7433 98 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=546.000000 s mm10.chrUn_GL456394 828 1 + 24323 A s rn5.chr14 30818711 1 + 115151701 A i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 1889 1 - 46848 A i papHam1.scaffold18774 I 272 I 123 s ornAna1.Ultra173 2778990 1 - 3935469 A i ornAna1.Ultra173 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7433 98 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-1674.000000 s mm10.chrUn_GL456394 829 15 + 24323 -AGTAGAAACAGAAA------A s rn5.chr14 30818712 21 + 115151701 -TATCAACACAGAAAAACAACA i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2778991 17 - 3935469 ATGTCAGGCTGGGGGAA----- i ornAna1.Ultra173 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535377 304 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 1890 123 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7433 98 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-1272.000000 s mm10.chrUn_GL456394 844 3 + 24323 CAA- s rn5.chr14 30818733 3 + 115151701 CAA- i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2535681 3 - 3767281 CTT- i myoLuc2.GL429902 I 304 I 172 s ornAna1.Ultra173 2779008 3 - 3935469 -AAA i ornAna1.Ultra173 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 1890 123 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 13959 659 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7433 98 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-1734.000000 s mm10.chrUn_GL456394 847 4 + 24323 CAAA- s rn5.chr14 30818736 4 + 115151701 AATA- i rn5.chr14 C 0 C 0 s pteVam1.scaffold_5921 14618 4 - 103762 CTTG- i pteVam1.scaffold_5921 I 659 I 7756 s ornAna1.Ultra173 2779011 4 - 3935469 -AAAG i ornAna1.Ultra173 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535684 172 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 1890 123 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7433 98 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=1282.000000 s mm10.chrUn_GL456394 851 40 + 24323 ATAGTATAGACGGA-TTTTAAATTAACATTGGTTTGTCAAA s rn5.chr14 30818740 41 + 115151701 ATACTATAGAATGATTTTTAATTTAACATTGATTTGCAAAA i rn5.chr14 C 0 C 0 s ornAna1.Ultra173 2779015 38 - 3935469 TTTGCCTTCATGGAAATTT---TCTACCCTGATTTGCAACG i ornAna1.Ultra173 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535684 172 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 1890 123 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7433 98 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=297.000000 s mm10.chrUn_GL456394 891 13 + 24323 AT--AACTTCATTGT s rn5.chr14 30818781 14 + 115151701 CTA-AACTGTATTGT i rn5.chr14 C 0 C 0 s proCap1.scaffold_41577 7531 13 - 16734 --AAAAGTACAATGT i proCap1.scaffold_41577 I 98 C 0 s ornAna1.Ultra173 2779053 13 - 3935469 CT--AACTGTGTTTT i ornAna1.Ultra173 C 0 N 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535684 172 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 1890 123 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=1868.000000 s mm10.chrUn_GL456394 904 46 + 24323 -AGAAGAATTCACTGATGTCTTTTAAGTATGAAATATAAGCAAATGC s rn5.chr14 30818795 44 + 115151701 -AGGAGAATTCGTTGATATCTTTTATGACTGAA--ATGAGCAAATGC i rn5.chr14 C 0 C 0 s proCap1.scaffold_41577 7544 42 - 16734 GAGTATAATTTATACAGGGT-----AGTATAAAACTTTTTCAGATGC i proCap1.scaffold_41577 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535684 172 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 1890 123 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=546.000000 s mm10.chrUn_GL456394 950 1 + 24323 A s rn5.chr14 30818839 1 + 115151701 A i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 2013 1 - 46848 A i papHam1.scaffold18774 I 123 I 10311 s proCap1.scaffold_41577 7586 1 - 16734 A i proCap1.scaffold_41577 C 0 I 7 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535684 172 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=4163.000000 s mm10.chrUn_GL456394 951 55 + 24323 TATATAGATTCAAATGGTTTTGCTTCAGAGAAATGACAATTTTATAAAATCATAG s rn5.chr14 30818840 55 + 115151701 TATATAATTTCAATTGTTTTTGCTTCACCTATATGACAGTTTTGTACAACCATAT i rn5.chr14 C 0 C 0 s proCap1.scaffold_41577 7594 54 - 16734 TATACATGCtgaattaggtgt-ccactgatatgtaacaatttttcacaaacttag i proCap1.scaffold_41577 I 7 I 2093 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535684 172 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 2014 10311 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=191.000000 s mm10.chrUn_GL456394 1006 2 + 24323 AC s rn5.chr14 30818895 2 + 115151701 AC i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535684 172 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 2014 10311 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7648 2093 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=602.000000 s mm10.chrUn_GL456394 1008 3 + 24323 ACT s rn5.chr14 30818897 3 + 115151701 ACT i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2535856 3 - 3767281 gct i myoLuc2.GL429902 I 172 I 858 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 2014 10311 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7648 2093 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=241.000000 s mm10.chrUn_GL456394 1011 5 + 24323 TAAAA s rn5.chr14 30818900 5 + 115151701 TTAAA i rn5.chr14 C 0 I 749 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 2014 10311 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7648 2093 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=0.000000 s mm10.chrUn_GL456394 1016 1598 + 24323 TATAATAGCCTTTCTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 2014 10311 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7648 2093 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e rn5.chr14 30818905 749 + 115151701 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=3641.000000 s mm10.chrUn_GL456394 2614 45 + 24323 TTTCTTCCCACTGCAGACAGCTTAAATAAGCATATATTCTCTTAA s rn5.chr14 30819654 45 + 115151701 TTTCTTCACACTGCAGACAGTTTAAATAAGCATATGTTCCCTTAA i rn5.chr14 I 749 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 2014 10311 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 7648 2093 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=1365.000000 s mm10.chrUn_GL456394 2659 5 + 24323 ATTAA s rn5.chr14 30819699 5 + 115151701 ATTAA i rn5.chr14 C 0 C 0 s proCap1.scaffold_41577 9741 5 - 16734 ATTAA i proCap1.scaffold_41577 I 2093 I 45 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 2014 10311 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=3098.000000 s mm10.chrUn_GL456394 2664 45 + 24323 CTCTTTGTTCATCTAGCCAAGCACAAACACCTGGATTTCAAAAAA s rn5.chr14 30819704 45 + 115151701 CTCATTGTTGATCTAGCCAAGCATAACCACTTGGGTTTCAAAGAA i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 2014 10311 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e proCap1.scaffold_41577 9746 45 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=-951.000000 s mm10.chrUn_GL456394 2709 1 + 24323 -T s rn5.chr14 30819749 1 + 115151701 -C i rn5.chr14 C 0 C 0 s proCap1.scaffold_41577 9791 1 - 16734 A- i proCap1.scaffold_41577 I 45 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 2014 10311 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7452550 1832 + 8154233 I e oviAri1.chr6 47689133 2235 - 129067040 I a score=180.000000 s mm10.chrUn_GL456394 2710 1 + 24323 T s rn5.chr14 30819750 1 + 115151701 T i rn5.chr14 C 0 C 0 s oviAri1.chr6 47691368 1 - 129067040 T i oviAri1.chr6 I 2235 C 0 s proCap1.scaffold_41577 9792 1 - 16734 C i proCap1.scaffold_41577 C 0 I 38 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 2014 10311 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 130724 1763 - 188344 I e dasNov3.JH567186 7452550 1832 + 8154233 I a score=-1080.000000 s mm10.chrUn_GL456394 2711 1 + 24323 -C s rn5.chr14 30819751 1 + 115151701 -C i rn5.chr14 C 0 C 0 s micMur1.scaffold_3417 132487 1 - 188344 -C i micMur1.scaffold_3417 I 1763 I 26 s oviAri1.chr6 47691369 1 - 129067040 G- i oviAri1.chr6 C 0 I 266 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.scaffold18774 2014 10311 - 46848 I e felCat5.chrB1 157743656 1753 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e proCap1.scaffold_41577 9793 38 - 16734 I e dasNov3.JH567186 7452550 1832 + 8154233 I a score=1365.000000 s mm10.chrUn_GL456394 2712 1 + 24323 T s rn5.chr14 30819752 1 + 115151701 T i rn5.chr14 C 0 C 0 s papHam1.Contig716445 798 1 - 1246 T i papHam1.Contig716445 n 10311 I 23 s tarSyr1.scaffold_481200 447 1 - 1129 t i tarSyr1.scaffold_481200 N 0 I 17 s felCat5.chrB1 157745409 1 + 205241052 T i felCat5.chrB1 I 1753 I 164 s dasNov3.JH567186 7454382 1 + 8154233 T i dasNov3.JH567186 I 1832 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 132488 26 - 188344 I e proCap1.scaffold_41577 9793 38 - 16734 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-1034.000000 s mm10.chrUn_GL456394 2713 1 + 24323 -T s rn5.chr14 30819753 1 + 115151701 -G i rn5.chr14 C 0 C 0 s dasNov3.JH567186 7454383 1 + 8154233 A- i dasNov3.JH567186 C 0 N 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 42890 1544 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_481200 448 17 - 1129 I e papHam1.Contig716445 799 23 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 132488 26 - 188344 I e proCap1.scaffold_41577 9793 38 - 16734 I e oviAri1.chr6 47691370 266 - 129067040 I a score=546.000000 s mm10.chrUn_GL456394 2714 1 + 24323 T s rn5.chr14 30819754 1 + 115151701 T i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 30909 1 + 52885 T i ochPri2.scaffold_11930 N 0 C 0 s turTru2.JH487638 44434 1 - 56521 T i turTru2.JH487638 I 1544 I 182 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_481200 448 17 - 1129 I e papHam1.Contig716445 799 23 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 132488 26 - 188344 I e proCap1.scaffold_41577 9793 38 - 16734 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-97.000000 s mm10.chrUn_GL456394 2715 3 + 24323 TTT s rn5.chr14 30819755 3 + 115151701 TTC i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 30910 3 + 52885 ACT i ochPri2.scaffold_11930 C 0 I 9 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_481200 448 17 - 1129 I e papHam1.Contig716445 799 23 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 132488 26 - 188344 I e proCap1.scaffold_41577 9793 38 - 16734 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-243.000000 s mm10.chrUn_GL456394 2718 9 + 24323 TTAGTAAAG s rn5.chr14 30819758 8 + 115151701 AT-GAAAAA i rn5.chr14 C 0 C 0 e ochPri2.scaffold_11930 30913 9 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_481200 448 17 - 1129 I e papHam1.Contig716445 799 23 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 132488 26 - 188344 I e proCap1.scaffold_41577 9793 38 - 16734 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-799.000000 s mm10.chrUn_GL456394 2727 3 + 24323 -GGA s rn5.chr14 30819766 3 + 115151701 -GAA i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 30922 3 + 52885 CGC- i ochPri2.scaffold_11930 I 9 I 7 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e tarSyr1.scaffold_481200 448 17 - 1129 I e papHam1.Contig716445 799 23 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 132488 26 - 188344 I e proCap1.scaffold_41577 9793 38 - 16734 I e oviAri1.chr6 47691370 266 - 129067040 I a score=273.000000 s mm10.chrUn_GL456394 2730 1 + 24323 A s rn5.chr14 30819769 1 + 115151701 A i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_481200 465 1 - 1129 a i tarSyr1.scaffold_481200 I 17 N 0 e ochPri2.scaffold_11930 30925 7 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.Contig716445 799 23 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 132488 26 - 188344 I e proCap1.scaffold_41577 9793 38 - 16734 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-32.000000 s mm10.chrUn_GL456394 2731 2 + 24323 AA s rn5.chr14 30819770 2 + 115151701 AT i rn5.chr14 C 0 C 0 e ochPri2.scaffold_11930 30925 7 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.Contig716445 799 23 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 132488 26 - 188344 I e proCap1.scaffold_41577 9793 38 - 16734 I e oviAri1.chr6 47691370 266 - 129067040 I a score=273.000000 s mm10.chrUn_GL456394 2733 1 + 24323 A s rn5.chr14 30819772 1 + 115151701 A i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 30932 1 + 52885 A i ochPri2.scaffold_11930 I 7 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 243620 1641 - 251247 I e papHam1.Contig716445 799 23 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 132488 26 - 188344 I e proCap1.scaffold_41577 9793 38 - 16734 I e oviAri1.chr6 47691370 266 - 129067040 I a score=422.000000 s mm10.chrUn_GL456394 2734 1 + 24323 T s rn5.chr14 30819773 1 + 115151701 T i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 30933 1 + 52885 C i ochPri2.scaffold_11930 C 0 C 0 s papHam1.Contig716445 822 1 - 1246 T i papHam1.Contig716445 I 23 C 0 s vicPac1.scaffold_1741 245261 1 - 251247 T i vicPac1.scaffold_1741 I 1641 I 1 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e micMur1.scaffold_3417 132488 26 - 188344 I e proCap1.scaffold_41577 9793 38 - 16734 I e oviAri1.chr6 47691370 266 - 129067040 I a score=910.000000 s mm10.chrUn_GL456394 2735 1 + 24323 A s rn5.chr14 30819774 1 + 115151701 A i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 30934 1 + 52885 A i ochPri2.scaffold_11930 C 0 C 0 s papHam1.Contig716445 823 1 - 1246 A i papHam1.Contig716445 C 0 C 0 s micMur1.scaffold_3417 132514 1 - 188344 A i micMur1.scaffold_3417 I 26 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 245262 1 - 251247 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e proCap1.scaffold_41577 9793 38 - 16734 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-308.000000 s mm10.chrUn_GL456394 2736 1 + 24323 T s rn5.chr14 30819775 1 + 115151701 T i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 30935 1 + 52885 T i ochPri2.scaffold_11930 C 0 I 139 s papHam1.Contig716445 824 1 - 1246 C i papHam1.Contig716445 C 0 n 0 s micMur1.scaffold_3417 132515 1 - 188344 G i micMur1.scaffold_3417 C 0 C 0 s vicPac1.scaffold_1741 245263 1 - 251247 C i vicPac1.scaffold_1741 I 1 C 0 s proCap1.scaffold_41577 9831 1 - 16734 T i proCap1.scaffold_41577 I 38 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=609.000000 s mm10.chrUn_GL456394 2737 2 + 24323 GT s rn5.chr14 30819776 2 + 115151701 GT i rn5.chr14 C 0 C 0 s micMur1.scaffold_3417 132516 2 - 188344 AT i micMur1.scaffold_3417 C 0 N 0 s vicPac1.scaffold_1741 245264 2 - 251247 AT i vicPac1.scaffold_1741 C 0 C 0 s proCap1.scaffold_41577 9832 2 - 16734 AC i proCap1.scaffold_41577 C 0 C 0 e ochPri2.scaffold_11930 30936 139 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2535859 858 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-1294.000000 s mm10.chrUn_GL456394 2739 1 + 24323 -A s rn5.chr14 30819778 1 + 115151701 -A i rn5.chr14 C 0 C 0 s vicPac1.scaffold_1741 245266 1 - 251247 -A i vicPac1.scaffold_1741 C 0 I 152 s myoLuc2.GL429902 2536717 1 - 3767281 -A i myoLuc2.GL429902 I 858 C 0 s proCap1.scaffold_41577 9834 1 - 16734 T- i proCap1.scaffold_41577 C 0 C 0 e ochPri2.scaffold_11930 30936 139 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e turTru2.JH487638 44435 182 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-1342.000000 s mm10.chrUn_GL456394 2740 1 + 24323 -G s rn5.chr14 30819779 1 + 115151701 -G i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2536718 1 - 3767281 -A i myoLuc2.GL429902 C 0 C 0 s proCap1.scaffold_41577 9835 1 - 16734 T- i proCap1.scaffold_41577 C 0 N 0 e ochPri2.scaffold_11930 30936 139 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 245267 152 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=391.000000 s mm10.chrUn_GL456394 2741 3 + 24323 TTA s rn5.chr14 30819780 3 + 115151701 TTT i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2536719 3 - 3767281 TTT i myoLuc2.GL429902 C 0 I 922 e ochPri2.scaffold_11930 30936 139 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 245267 152 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=4860.000000 s mm10.chrUn_GL456394 2744 77 + 24323 TGGATTAAGATCACCAATCATCATTAACATTTTGTTTCTAATTATACCTTCAAATAGGTTGCAGAGGATACAGTGTG s rn5.chr14 30819783 76 + 115151701 TAGAGTAAGATGACCAATCATCATTAAAATTTCATTTTTAATTTTGTCTTCAA-TAGGTTGCACAGGATACAGTGTG i rn5.chr14 C 0 C 0 e ochPri2.scaffold_11930 30936 139 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 245267 152 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=3481.000000 s mm10.chrUn_GL456394 2821 50 + 24323 AAAACTGGAATAGTAATA--AAACATTTTGAAGA---AG-TCATTTAAACCAATTA s rn5.chr14 30819859 50 + 115151701 AAAAATAGGAT-CTAAGA--AAACATTTTGAAAA---AGGTCATTTAAACCAAAAC i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 122 55 + 1524 AGAAGTGAATTAGTAAAAAGAAAAATTTTGAAGATAGAG-TCAATGAAAGAAATAC i micMur1.scaffold_107239 N 0 C 0 e ochPri2.scaffold_11930 30936 139 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 245267 152 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=732.000000 s mm10.chrUn_GL456394 2871 3 + 24323 TCC s rn5.chr14 30819909 3 + 115151701 TCA i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 31075 3 + 52885 TCT i ochPri2.scaffold_11930 I 139 I 64 s micMur1.scaffold_107239 177 3 + 1524 TCA i micMur1.scaffold_107239 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 245267 152 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-101.000000 s mm10.chrUn_GL456394 2874 3 + 24323 AAA-- s rn5.chr14 30819912 3 + 115151701 AAA-- i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 180 5 + 1524 AAATT i micMur1.scaffold_107239 C 0 C 0 e ochPri2.scaffold_11930 31078 64 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 245267 152 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157745410 164 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=546.000000 s mm10.chrUn_GL456394 2877 1 + 24323 T s rn5.chr14 30819915 1 + 115151701 T i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 185 1 + 1524 T i micMur1.scaffold_107239 C 0 C 0 s felCat5.chrB1 157745574 1 + 205241052 T i felCat5.chrB1 I 164 I 7808 e ochPri2.scaffold_11930 31078 64 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 245267 152 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=1706.000000 s mm10.chrUn_GL456394 2878 16 + 24323 GTGTCACCTTTTCTGA s rn5.chr14 30819916 16 + 115151701 GTGTCACCTCTTTTGA i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 186 16 + 1524 ATGTTGTGTTATTTTA i micMur1.scaffold_107239 C 0 C 0 e ochPri2.scaffold_11930 31078 64 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44435 182 - 56521 I e vicPac1.scaffold_1741 245267 152 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157745575 7808 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-534.000000 s mm10.chrUn_GL456394 2894 2 + 24323 -AG s rn5.chr14 30819932 2 + 115151701 -AG i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 202 2 + 1524 -AG i micMur1.scaffold_107239 C 0 C 0 s turTru2.JH487638 44617 2 - 56521 TA- i turTru2.JH487638 I 182 C 0 e ochPri2.scaffold_11930 31078 64 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e vicPac1.scaffold_1741 245267 152 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157745575 7808 + 205241052 I e pteVam1.scaffold_5921 14622 7756 - 103762 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-1351.000000 s mm10.chrUn_GL456394 2896 1 + 24323 -G s rn5.chr14 30819934 1 + 115151701 -A i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 204 1 + 1524 -A i micMur1.scaffold_107239 C 0 C 0 s pteVam1.scaffold_74799 128 1 - 1128 T- i pteVam1.scaffold_74799 n 7756 I 126 e ochPri2.scaffold_11930 31078 64 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44619 0 - 56521 C e vicPac1.scaffold_1741 245267 152 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157745575 7808 + 205241052 I e oviAri1.chr6 47691370 266 - 129067040 I a score=295.000000 s mm10.chrUn_GL456394 2897 1 + 24323 A s rn5.chr14 30819935 1 + 115151701 A i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 205 1 + 1524 A i micMur1.scaffold_107239 C 0 C 0 s vicPac1.scaffold_1741 245419 1 - 251247 T i vicPac1.scaffold_1741 I 152 I 774 s turTru2.JH487638 44619 1 - 56521 A i turTru2.JH487638 C 0 I 1 s felCat5.chrB1 157753383 1 + 205241052 a i felCat5.chrB1 I 7808 C 0 e ochPri2.scaffold_11930 31078 64 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e papHam1.Contig716445 825 0 - 1246 I e pteVam1.scaffold_74799 129 126 - 1128 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-1322.000000 s mm10.chrUn_GL456394 2898 3 + 24323 --AGA s rn5.chr14 30819936 1 + 115151701 --A-- i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 206 1 + 1524 --A-- i micMur1.scaffold_107239 C 0 C 0 s turTru2.JH487638 44621 3 - 56521 ATA-- i turTru2.JH487638 I 1 I 228 s felCat5.chrB1 157753384 3 + 205241052 aaa-- i felCat5.chrB1 C 0 C 0 e ochPri2.scaffold_11930 31078 64 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e pteVam1.scaffold_74799 129 126 - 1128 I e oviAri1.chr6 47691370 266 - 129067040 I a score=3179.000000 s mm10.chrUn_GL456394 2901 11 + 24323 GATTCAACTCA s rn5.chr14 30819937 9 + 115151701 --TTTAATTCA i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 207 9 + 1524 --TTCAAATCA i micMur1.scaffold_107239 C 0 C 0 s felCat5.chrB1 157753387 11 + 205241052 aattcaattta i felCat5.chrB1 C 0 I 785 e ochPri2.scaffold_11930 31078 64 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e pteVam1.scaffold_74799 129 126 - 1128 I e oviAri1.chr6 47691370 266 - 129067040 I a score=5105.000000 s mm10.chrUn_GL456394 2912 34 + 24323 ATGAATATTTTT-CTGACACCTGGCATGCTATCAA s rn5.chr14 30819946 35 + 115151701 ATGAATATTTTTTCTGATACCTGACATGCTAGCAA i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 216 34 + 1524 GTGTATAATTAT-TTAACACCTGGTATGCTAATAA i micMur1.scaffold_107239 C 0 C 0 e ochPri2.scaffold_11930 31078 64 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e choHof1.scaffold_92287 4208 2005 - 8037 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 129 126 - 1128 I e oviAri1.chr6 47691370 266 - 129067040 I a score=-1882.000000 s mm10.chrUn_GL456394 2946 1 + 24323 -G s rn5.chr14 30819981 1 + 115151701 -G i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 31142 1 + 52885 -G i ochPri2.scaffold_11930 I 64 I 121 s micMur1.scaffold_107239 250 1 + 1524 -T i micMur1.scaffold_107239 C 0 C 0 s choHof1.scaffold_92287 6213 1 - 8037 T- i choHof1.scaffold_92287 I 2005 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 129 126 - 1128 I e oviAri1.chr6 47691370 266 - 129067040 I a score=180.000000 s mm10.chrUn_GL456394 2947 1 + 24323 A s rn5.chr14 30819982 1 + 115151701 A i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 251 1 + 1524 A i micMur1.scaffold_107239 C 0 C 0 s choHof1.scaffold_92287 6214 1 - 8037 G i choHof1.scaffold_92287 C 0 N 0 e ochPri2.scaffold_11930 31143 121 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 129 126 - 1128 I e oviAri1.chr6 47691370 266 - 129067040 I a score=814.000000 s mm10.chrUn_GL456394 2948 57 + 24323 GTAGATTTTTAAAAGAATATATGTTTGAAACCT--AGCCACATGGAATAAGGAATAGCA- s rn5.chr14 30819983 56 + 115151701 GTAGCTGTTTTAA-GCATGTATAATGGAAACAT--AGCCTCATGTATTAAGAAATAGCA- i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 252 55 + 1524 GTCCCACTTTTCATTCATACATGTTTTAACGTTAAAGCTTT-----TTAAGACATGGTAC i micMur1.scaffold_107239 C 0 C 0 e ochPri2.scaffold_11930 31143 121 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 129 126 - 1128 I e oviAri1.chr6 47691370 266 - 129067040 I a score=4524.000000 s mm10.chrUn_GL456394 3005 20 + 24323 TTCCAATTTTATTTAATTTT s rn5.chr14 30820039 20 + 115151701 TTCCAATTCCACTTAATTTT i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 307 20 + 1524 Cttttatttcatttaatttt i micMur1.scaffold_107239 C 0 C 0 s oviAri1.chr6 47691636 20 - 129067040 TTTCAGGCTTACAAACTTTT i oviAri1.chr6 I 266 I 135 e ochPri2.scaffold_11930 31143 121 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 129 126 - 1128 I a score=-1095.000000 s mm10.chrUn_GL456394 3025 18 + 24323 TAGGAAAATTAGAACTCA s rn5.chr14 30820059 9 + 115151701 TAAGAACTT--------- i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 327 6 + 1524 taacaa------------ i micMur1.scaffold_107239 C 0 C 0 e ochPri2.scaffold_11930 31143 121 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 129 126 - 1128 I e oviAri1.chr6 47691656 135 - 129067040 I a score=182.000000 s mm10.chrUn_GL456394 3043 2 + 24323 TA s pteVam1.scaffold_74799 255 2 - 1128 TA i pteVam1.scaffold_74799 I 126 I 11 e ochPri2.scaffold_11930 31143 121 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e micMur1.scaffold_107239 333 0 + 1524 C e rn5.chr14 30820068 0 + 115151701 C e oviAri1.chr6 47691656 135 - 129067040 I a score=807.000000 s mm10.chrUn_GL456394 3045 8 + 24323 GTAGAGAC s rn5.chr14 30820068 8 + 115151701 GTAGAGTT i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 333 8 + 1524 ataaaaat i micMur1.scaffold_107239 C 0 C 0 e ochPri2.scaffold_11930 31143 121 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 257 11 - 1128 I e oviAri1.chr6 47691656 135 - 129067040 I a score=-1517.000000 s mm10.chrUn_GL456394 3053 1 + 24323 -T s rn5.chr14 30820076 1 + 115151701 -T i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 341 1 + 1524 -g i micMur1.scaffold_107239 C 0 C 0 s pteVam1.scaffold_74799 268 1 - 1128 C- i pteVam1.scaffold_74799 I 11 I 100 e ochPri2.scaffold_11930 31143 121 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e oviAri1.chr6 47691656 135 - 129067040 I a score=258.000000 s mm10.chrUn_GL456394 3054 18 + 24323 ATTTTATTGA---------GGCAGATG-- s rn5.chr14 30820077 18 + 115151701 ATTTTATTGA---------GGCAGATG-- i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 342 29 + 1524 attatatctactttttaataaccaatatt i micMur1.scaffold_107239 C 0 I 4 e ochPri2.scaffold_11930 31143 121 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 269 100 - 1128 I e oviAri1.chr6 47691656 135 - 129067040 I a score=546.000000 s mm10.chrUn_GL456394 3072 1 + 24323 A s rn5.chr14 30820095 1 + 115151701 A i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 672 1 + 1545 A i tarSyr1.scaffold_349197 N 0 C 0 s micMur1.scaffold_107239 375 1 + 1524 a i micMur1.scaffold_107239 I 4 C 0 e ochPri2.scaffold_11930 31143 121 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 269 100 - 1128 I e oviAri1.chr6 47691656 135 - 129067040 I a score=422.000000 s mm10.chrUn_GL456394 3073 1 + 24323 T s rn5.chr14 30820096 1 + 115151701 C i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 31264 1 + 52885 T i ochPri2.scaffold_11930 I 121 I 84 s tarSyr1.scaffold_349197 673 1 + 1545 T i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 376 1 + 1524 t i micMur1.scaffold_107239 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 269 100 - 1128 I e oviAri1.chr6 47691656 135 - 129067040 I a score=-1340.000000 s mm10.chrUn_GL456394 3074 20 + 24323 TTAAATGATCAATATGCAGC s rn5.chr14 30820097 20 + 115151701 TAAAATGATCACTATATTGC i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 674 14 + 1545 ----TGAAATGTTCTGTA-- i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 377 15 + 1524 ----attattattatataa- i micMur1.scaffold_107239 C 0 C 0 e ochPri2.scaffold_11930 31265 84 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 21255 4918 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 269 100 - 1128 I e oviAri1.chr6 47691656 135 - 129067040 I a score=1437.000000 s mm10.chrUn_GL456394 3094 7 + 24323 GTTCTCC s rn5.chr14 30820117 7 + 115151701 ATTCTCT i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 688 5 + 1545 --TATTT i tarSyr1.scaffold_349197 C 0 I 1 s micMur1.scaffold_107239 392 6 + 1524 -tttttt i micMur1.scaffold_107239 C 0 I 1 s tupBel1.scaffold_120217.1-71828 26173 6 - 71828 -TTTTTT i tupBel1.scaffold_120217.1-71828 I 4918 I 3743 e ochPri2.scaffold_11930 31265 84 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 269 100 - 1128 I e oviAri1.chr6 47691656 135 - 129067040 I a score=6380.000000 s mm10.chrUn_GL456394 3101 38 + 24323 AACCTTGAAATAGAAGTAGAAATTAGACAAATGTTTTA s rn5.chr14 30820124 38 + 115151701 GTACTTGATATAGAATTAGAAATTAGACAAATGTTTCA i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 694 38 + 1545 TACATTCTTACAGAAGTTAAAATTTGAATAATATTTTC i tarSyr1.scaffold_349197 I 1 C 0 s micMur1.scaffold_107239 399 35 + 1524 taCCATTTTACAGAAGTTAAAATT---AGAATATTTCC i micMur1.scaffold_107239 I 1 C 0 e ochPri2.scaffold_11930 31265 84 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 269 100 - 1128 I e oviAri1.chr6 47691656 135 - 129067040 I a score=600.000000 s mm10.chrUn_GL456394 3139 2 + 24323 GG s rn5.chr14 30820162 2 + 115151701 GG i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 31349 2 + 52885 GG i ochPri2.scaffold_11930 I 84 I 13 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e tarSyr1.scaffold_349197 732 0 + 1545 C e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 269 100 - 1128 I e micMur1.scaffold_107239 434 0 + 1524 C e oviAri1.chr6 47691656 135 - 129067040 I a score=1692.000000 s mm10.chrUn_GL456394 3141 3 + 24323 AAG s rn5.chr14 30820164 3 + 115151701 AAG i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 732 3 + 1545 AAG i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 434 3 + 1524 AAG i micMur1.scaffold_107239 C 0 C 0 e ochPri2.scaffold_11930 31351 13 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44624 228 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 269 100 - 1128 I e oviAri1.chr6 47691656 135 - 129067040 I a score=1205.000000 s mm10.chrUn_GL456394 3144 2 + 24323 GC s rn5.chr14 30820167 2 + 115151701 GC i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 735 2 + 1545 GT i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 437 2 + 1524 GT i micMur1.scaffold_107239 C 0 C 0 s turTru2.JH487638 44852 2 - 56521 GC i turTru2.JH487638 I 228 C 0 e ochPri2.scaffold_11930 31351 13 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 269 100 - 1128 I e oviAri1.chr6 47691656 135 - 129067040 I a score=-10316.000000 s mm10.chrUn_GL456394 3146 3 + 24323 CC------A s rn5.chr14 30820169 3 + 115151701 AC------G i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 737 9 + 1545 CTTGCCTGG i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 439 9 + 1524 CCTATCTGA i micMur1.scaffold_107239 C 0 C 0 s turTru2.JH487638 44854 3 - 56521 -----CTG- i turTru2.JH487638 C 0 I 19 s oviAri1.chr6 47691791 3 - 129067040 -----TTG- i oviAri1.chr6 I 135 I 23 s pteVam1.scaffold_74799 369 3 - 1128 -----TCA- i pteVam1.scaffold_74799 I 100 I 2 e ochPri2.scaffold_11930 31351 13 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I a score=-837.000000 s mm10.chrUn_GL456394 3149 2 + 24323 TT s rn5.chr14 30820172 1 + 115151701 T- i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 746 2 + 1545 CT i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 448 2 + 1524 TT i micMur1.scaffold_107239 C 0 C 0 e ochPri2.scaffold_11930 31351 13 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44857 19 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 372 2 - 1128 I e oviAri1.chr6 47691794 23 - 129067040 I a score=804.000000 s mm10.chrUn_GL456394 3151 3 + 24323 AAA s rn5.chr14 30820173 3 + 115151701 AAA i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 748 3 + 1545 CAG i tarSyr1.scaffold_349197 C 0 I 9 s micMur1.scaffold_107239 450 3 + 1524 CAG i micMur1.scaffold_107239 C 0 I 10 s pteVam1.scaffold_74799 374 3 - 1128 CAA i pteVam1.scaffold_74799 I 2 C 0 e ochPri2.scaffold_11930 31351 13 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44857 19 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e oviAri1.chr6 47691794 23 - 129067040 I a score=-1484.000000 s mm10.chrUn_GL456394 3154 2 + 24323 -AC s rn5.chr14 30820176 2 + 115151701 -AC i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 31364 2 + 52885 -CC i ochPri2.scaffold_11930 I 13 C 0 s tarSyr1.scaffold_349197 760 2 + 1545 -AC i tarSyr1.scaffold_349197 I 9 C 0 s micMur1.scaffold_107239 463 2 + 1524 -AT i micMur1.scaffold_107239 I 10 C 0 s pteVam1.scaffold_74799 377 2 - 1128 GA- i pteVam1.scaffold_74799 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44857 19 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e oviAri1.chr6 47691794 23 - 129067040 I a score=-861.000000 s mm10.chrUn_GL456394 3156 1 + 24323 T s rn5.chr14 30820178 1 + 115151701 A i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 31366 1 + 52885 A i ochPri2.scaffold_11930 C 0 C 0 s tarSyr1.scaffold_349197 762 1 + 1545 T i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 465 1 + 1524 G i micMur1.scaffold_107239 C 0 C 0 s turTru2.JH487638 44876 1 - 56521 T i turTru2.JH487638 I 19 C 0 s oviAri1.chr6 47691817 1 - 129067040 T i oviAri1.chr6 I 23 I 14790 s pteVam1.scaffold_74799 379 1 - 1128 T i pteVam1.scaffold_74799 C 0 I 3 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I a score=3279.000000 s mm10.chrUn_GL456394 3157 2 + 24323 TC s rn5.chr14 30820179 2 + 115151701 TC i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 31367 2 + 52885 TC i ochPri2.scaffold_11930 C 0 I 154 s tarSyr1.scaffold_349197 763 2 + 1545 TC i tarSyr1.scaffold_349197 C 0 I 3 s micMur1.scaffold_107239 466 2 + 1524 TC i micMur1.scaffold_107239 C 0 I 3 s turTru2.JH487638 44877 2 - 56521 TC i turTru2.JH487638 C 0 C 0 s pteVam1.scaffold_74799 383 2 - 1128 CC i pteVam1.scaffold_74799 I 3 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-3631.000000 s mm10.chrUn_GL456394 3159 1 + 24323 -A s rn5.chr14 30820181 1 + 115151701 -C i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 768 1 + 1545 -C i tarSyr1.scaffold_349197 I 3 I 1 s micMur1.scaffold_107239 471 1 + 1524 -C i micMur1.scaffold_107239 I 3 C 0 s turTru2.JH487638 44879 1 - 56521 A- i turTru2.JH487638 C 0 I 503 s pteVam1.scaffold_74799 385 1 - 1128 A- i pteVam1.scaffold_74799 C 0 I 2 e ochPri2.scaffold_11930 31369 154 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=1085.000000 s mm10.chrUn_GL456394 3160 6 + 24323 ACTGGT s rn5.chr14 30820182 6 + 115151701 ACTGGT i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 770 6 + 1545 ACCAAC i tarSyr1.scaffold_349197 I 1 C 0 s micMur1.scaffold_107239 472 6 + 1524 ACCACC i micMur1.scaffold_107239 C 0 C 0 s pteVam1.scaffold_74799 388 6 - 1128 ATGAGC i pteVam1.scaffold_74799 I 2 I 502 e ochPri2.scaffold_11930 31369 154 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44880 503 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=42101.000000 s mm10.chrUn_GL456394 3166 150 + 24323 ATGTTTTTTGAATTTCAAGAGAATAATTTTTTATAACTACAATTCTCAGAGTCAGCAGGAGTTCATAGCATCTCCAAAGATTATTTGGCTATTTTTGATTCAGATCAAAGCAGATGAAACAATCATTATGCATACTGTAAATCAAAGTAC s rn5.chr14 30820188 148 + 115151701 ATGTTGTT-GAATTTCAAATGAATAATTTTT-ACAACTACAATTCTCAGAGTCAGCAGGAGTTCATAGCATCTCAGAAAATCGTTTGACTACTTTTGTTTCAGGCCAAAGAAGACAAAACAATCATTATGCATACTGTAAATCAAAATTC i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 776 148 + 1545 ATGTTTAT-GAACTTGAAACCAATATTTTTTGATAAATGTAATTCTCAGAAACAGCAAGAATTCACACAGTCTGGGAAA-TCATTTGCTTATTTTTTATTCAGGGTAAACCCAACAAAATGATTCTTATGCATTTTGCAAATCAAAGTGC i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 478 148 + 1524 ATGTTTCT-GAATTTGAAATGGATATTTCTTGATCAGTGTAATTCTCAGAATCAACAGGAGTTCAAGTGCTCCCAGAAAGGCATTTGATTAACTTTTATTTAGGGT-AACCAAACAAAATGATCATTATGCATTCTGTAAATCAAAGTGT i micMur1.scaffold_107239 C 0 C 0 e ochPri2.scaffold_11930 31369 154 + 52885 I e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44880 503 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 394 502 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-1852.000000 s mm10.chrUn_GL456394 3316 2 + 24323 TT- s rn5.chr14 30820336 2 + 115151701 TT- i rn5.chr14 C 0 C 0 s ochPri2.scaffold_11930 31523 2 + 52885 CT- i ochPri2.scaffold_11930 I 154 N 0 s tarSyr1.scaffold_349197 924 2 + 1545 -TA i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 626 2 + 1524 -TG i micMur1.scaffold_107239 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44880 503 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 394 502 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=19869.000000 s mm10.chrUn_GL456394 3318 113 + 24323 -------------------------GGGAAATAAACACAC-TTCCCTTCATCTGCTGAGCCACTATTTA-CATGCATATCCTGAACTGTGTATTCTATTGATCAAAACTTGTCAATGAATCAAATTTGTACTGGCATTGG s rn5.chr14 30820338 114 + 115151701 -------------------------TGGCAATAAACACAC-TTCCCTTCATCTGCTGATCCACCAGTTAGCGTGCATGCTCCAAACTGTTTATTCTATTGATCAAAACGTGCCAATGAACCAAATTTGTACTAGCATAGA i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 926 113 + 1545 CT-------------------------TAAACATGCATAT-CTCTCTTAATCTGCTGATCCAGTAGTTC-CTCCCATTTCTCAAAATTTTTATCTTATTGATTACAACTTCTTAATGAATCAAATATGCTTTATTATATA i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 628 139 + 1524 atatatatatatatatatatatatatatatatatatatataCACCCTTCATCTGCTCATCCAGTAATGC-CTCTAACCTCCCCAAATTTTTATCTTAATGACTGAAACATTTCAATAAAAAAAATTTGTTTTATAATGTA i micMur1.scaffold_107239 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2536722 922 - 3767281 I e turTru2.JH487638 44880 503 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 394 502 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=7995.000000 s mm10.chrUn_GL456394 3431 32 + 24323 GGAAATGAAAA--GCTCATCTTAACAATTTGGAA s rn5.chr14 30820452 32 + 115151701 GAAAATGAAAA--GCTTATTTTAACAATTTGCAA i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1039 34 + 1545 GGAAATAAAAAATAATAATATTGACAATTTAGAA i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 767 26 + 1524 AGAAATAAAAG--------GCTAACAGTTTGGGG i micMur1.scaffold_107239 C 0 C 0 s myoLuc2.GL429902 2537644 30 - 3767281 GGAGATAAATA----TTAACTCtaaaattaggaa i myoLuc2.GL429902 I 922 I 1286 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e turTru2.JH487638 44880 503 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 394 502 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=24827.000000 s mm10.chrUn_GL456394 3463 184 + 24323 G--AAAAATAAAGTTCTTAATATTCTGCATAACTTGGCAAAATAGTCTATGCAGGTGTGTAGTTTGAAAATAACATACTTTCTAGTGGATTGGACTTTGGTTTGAGTCCCAGTTTTCTCAAACATTAT--------------------------------------------------TCAA-------CTGATGGCCTTTAGAAACCTATTTACATTTTTAAGGACAGAGTCT------------------------CAAAACCTA s rn5.chr14 30820484 183 + 115151701 G--AAAAATAAATTTCTTAATATTCTGCATAACTTGGCAAAATAGTCTATGCAGGTGTTTGGTTTGAAAATAGCATGCTT-CTTGTGGATTGGCCCTTGGTTAGAGCCCCAGTTTTCTCAGTCTTTAT--------------------------------------------------TCAA-------CTGATGGGCTTTAGAAACCTAGTCACATTTTCCAGGACAGAGTAT------------------------CCAAACCTC i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1073 264 + 1545 G--AAAAGTGAACTTCCTTATACTCACTTTATCTTGGTAAATTAATTCATGCATCTATGTGGTTGAAAGATTATAGGTTTTGTTGTCAGTTGGACCTCAGCATAAATCACAGTTTTATCATACACTATCTCTTACACATCCAGAAGTTATTCTGGATGTTTCTATAATTAGAAGCATATAAAATATGACCTGATAGCTTTTCAAAGTTATTTTACA-TCTCTAAGACTCAATTTTCTCTTATATAAATTATAAGATTTCAAAATCTA i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 793 186 + 1524 GAAAAAAATGACTTCCTTTA----CACCTTATCTTGGTAAAATAATTCGTGTAGCTACATGGTTGAAAGATTATGGGTTTCATTGTCAGTCAAACCTTCGTGTGAATCATAATTTTATCAT---------------------------------------------------------TAAACTAT---CTGATAGCTTTT--AAGT----------TCTCTAAGACTCAATTTTC-CTTTTATAAATTGAAAG----CAAAACCTA i micMur1.scaffold_107239 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 44880 503 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 394 502 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-258.000000 s mm10.chrUn_GL456394 3647 1 + 24323 C s rn5.chr14 30820667 1 + 115151701 C i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1337 1 + 1545 A i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 979 1 + 1524 C i micMur1.scaffold_107239 C 0 C 0 s turTru2.JH487638 45383 1 - 56521 t i turTru2.JH487638 I 503 I 66 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 394 502 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=4401.000000 s mm10.chrUn_GL456394 3648 23 + 24323 ATGAGCTTTGGTGAGAGCAGTAT s rn5.chr14 30820668 23 + 115151701 CTCAGCTTTGGTGTGGGCAGCAT i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1338 23 + 1545 CTCAGGTTTGTCTTAAGCATCAT i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 980 23 + 1524 TTCGTGTTTGTTATGAGCATTGT i micMur1.scaffold_107239 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45384 66 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 394 502 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=566.000000 s mm10.chrUn_GL456394 3671 2 + 24323 GA s rn5.chr14 30820691 2 + 115151701 TA i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1361 2 + 1545 GA i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 1003 2 + 1524 GA i micMur1.scaffold_107239 C 0 C 0 s pteVam1.scaffold_74799 896 2 - 1128 gg i pteVam1.scaffold_74799 I 502 I 50 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45384 66 - 56521 I e vicPac1.scaffold_1741 245420 774 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=422.000000 s mm10.chrUn_GL456394 3673 1 + 24323 A s rn5.chr14 30820693 1 + 115151701 A i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1363 1 + 1545 G i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 1005 1 + 1524 A i micMur1.scaffold_107239 C 0 C 0 s vicPac1.scaffold_1741 246194 1 - 251247 a i vicPac1.scaffold_1741 I 774 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45384 66 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157753398 785 + 205241052 I e pteVam1.scaffold_74799 898 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-2914.000000 s mm10.chrUn_GL456394 3674 3 + 24323 ATT- s rn5.chr14 30820694 3 + 115151701 AAT- i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1364 3 + 1545 AGC- i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 1006 3 + 1524 AGT- i micMur1.scaffold_107239 C 0 C 0 s vicPac1.scaffold_1741 246195 3 - 251247 -atg i vicPac1.scaffold_1741 C 0 I 46 s felCat5.chrB1 157754183 3 + 205241052 -atc i felCat5.chrB1 I 785 I 47 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45384 66 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e pteVam1.scaffold_74799 898 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=2396.000000 s mm10.chrUn_GL456394 3677 34 + 24323 CCTTTAAATACTTCAGTACCATGCTTGGTCCACA------------ s rn5.chr14 30820697 34 + 115151701 CCTTTAAATCCTTTAGTACCATGTTTGGTCAACA------------ i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1367 44 + 1545 TACAGGAAATGCCCAGTCTCATACCTGGTCTATAATATGTG--TAA i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 1009 46 + 1524 TATTTGAAACATCCAGCTCTGTATCTGGCCCATAATATATGCTCAG i micMur1.scaffold_107239 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45384 66 - 56521 I e vicPac1.scaffold_1741 246198 46 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754186 47 + 205241052 I e pteVam1.scaffold_74799 898 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-1734.000000 s mm10.chrUn_GL456394 3711 11 + 24323 -AGAGGGTTTAA s rn5.chr14 30820731 11 + 115151701 -GAGGGGTTTAA i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1411 11 + 1545 -AAAAAATCTCA i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 1055 11 + 1524 -GAGGCGCCTTC i micMur1.scaffold_107239 C 0 C 0 s turTru2.JH487638 45450 11 - 56521 gcatgtgctca- i turTru2.JH487638 I 66 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e vicPac1.scaffold_1741 246198 46 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754186 47 + 205241052 I e pteVam1.scaffold_74799 898 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-423.000000 s mm10.chrUn_GL456394 3722 1 + 24323 A s rn5.chr14 30820742 1 + 115151701 G i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1422 1 + 1545 A i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 1066 1 + 1524 C i micMur1.scaffold_107239 C 0 C 0 s vicPac1.scaffold_1741 246244 1 - 251247 g i vicPac1.scaffold_1741 I 46 I 29 s turTru2.JH487638 45461 1 - 56521 a i turTru2.JH487638 C 0 I 50 s pteVam1.scaffold_74799 948 1 - 1128 g i pteVam1.scaffold_74799 I 50 n 50 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754186 47 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-1858.000000 s mm10.chrUn_GL456394 3723 17 + 24323 -TGTT------------TTCTTCTCTTTCA s rn5.chr14 30820743 21 + 115151701 -AATTCCCT--------TTCTTGTCTTACA i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1423 20 + 1545 -AATTTTCT--------TTCTT-TCTGCCT i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 1067 28 + 1524 -TTTCTTCTTTATTGTGTTCCT-TCTTCCT i micMur1.scaffold_107239 C 0 I 18 s felCat5.chrB1 157754233 17 + 205241052 aaatggCCT--------TTCTT-TC----A i felCat5.chrB1 I 47 I 103 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45462 50 - 56521 I e vicPac1.scaffold_1741 246245 29 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=1337.000000 s mm10.chrUn_GL456394 3740 3 + 24323 TCA s rn5.chr14 30820764 3 + 115151701 TCA i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1443 3 + 1545 TCC i tarSyr1.scaffold_349197 C 0 C 0 s micMur1.scaffold_107239 1113 3 + 1524 TCT i micMur1.scaffold_107239 I 18 C 0 s vicPac1.scaffold_1741 246274 3 - 251247 tcc i vicPac1.scaffold_1741 I 29 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45462 50 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754250 103 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=2987.000000 s mm10.chrUn_GL456394 3743 8 + 24323 TTTCTCCA- s rn5.chr14 30820767 8 + 115151701 TTTCTTCC- i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_349197 1446 8 + 1545 TTTCTTCA- i tarSyr1.scaffold_349197 C 0 N 0 s micMur1.scaffold_107239 1116 8 + 1524 ttttttca- i micMur1.scaffold_107239 C 0 C 0 s vicPac1.scaffold_1741 246277 8 - 251247 -tccctcta i vicPac1.scaffold_1741 C 0 I 78 s turTru2.JH487638 45512 7 - 56521 -TTTTTCC- i turTru2.JH487638 I 50 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754250 103 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-684.000000 s mm10.chrUn_GL456394 3751 3 + 24323 ATG- s rn5.chr14 30820775 3 + 115151701 ATG- i rn5.chr14 C 0 C 0 s turTru2.JH487638 45519 3 - 56521 -ttt i turTru2.JH487638 C 0 I 3205 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e vicPac1.scaffold_1741 246285 78 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754250 103 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e micMur1.scaffold_107239 1124 0 + 1524 C e oviAri1.chr6 47691818 14790 - 129067040 I a score=1538.000000 s mm10.chrUn_GL456394 3754 50 + 24323 TTTAGAC-----------ATTATTGGGA-ATGCATT-CATGTCACCACTGCCACTTGTTTGTG s rn5.chr14 30820778 61 + 115151701 TTTAGACTTAAAACAAACATTATGGAGA-ATTCATT-CATGTCACCAAGGCCACTGGTGTGTG i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 1124 49 + 1524 --------------cagctttattgagacataaatcacatgccataaaattcaccaaattaaa i micMur1.scaffold_107239 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_1741 246285 78 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754250 103 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=613.000000 s mm10.chrUn_GL456394 3804 2 + 24323 AT s rn5.chr14 30820839 2 + 115151701 AT i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 1173 2 + 1524 gt i micMur1.scaffold_107239 C 0 C 0 s felCat5.chrB1 157754353 2 + 205241052 gt i felCat5.chrB1 I 103 I 18 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_1741 246285 78 - 251247 I e papHam1.Contig716445 825 0 - 1246 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=387.000000 s mm10.chrUn_GL456394 3806 2 + 24323 GT s rn5.chr14 30820841 2 + 115151701 AT i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 1175 2 + 1524 gt i micMur1.scaffold_107239 C 0 C 0 s vicPac1.scaffold_1741 246363 2 - 251247 gc i vicPac1.scaffold_1741 I 78 N 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754355 18 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=908.000000 s mm10.chrUn_GL456394 3808 13 + 24323 ---AATACAGTCTCCA s rn5.chr14 30820843 13 + 115151701 ---AATATGGTGTTAA i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 1177 16 + 1524 ataaataaaactttaa i micMur1.scaffold_107239 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754355 18 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-310.000000 s mm10.chrUn_GL456394 3821 1 + 24323 A s rn5.chr14 30820856 1 + 115151701 A i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 1193 1 + 1524 t i micMur1.scaffold_107239 C 0 C 0 s felCat5.chrB1 157754373 1 + 205241052 t i felCat5.chrB1 I 18 I 120 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=11579.000000 s mm10.chrUn_GL456394 3822 118 + 24323 ACTC---TTCACTATAATGACTTTTGTAATCATC-TTGTGCTTTAATACTAGAATAATTTTATTTTCTCAAAGAAAAATCTTCACATCAGGTCACAGTTTTTCTTCAT-TACTACTTATACAA s rn5.chr14 30820857 118 + 115151701 ACTC---TTCACTGAAATGACCTTTGCAATCATC-CCATGCTTTACTACTAAAATAATTTTATTTTCTCAAAGAAAAATCTTCATATCAGTTCACAATTTTTTTTCAG-TACTGcttatacaa i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 1194 122 + 1524 gcttatagtctattcaaaaaatttgggaatcatcaccatgatacatt-ttagcacaattttattaccccaaaaagaaaccctgatactcgttaatagttagtccccatactctgttcccacaa i micMur1.scaffold_107239 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754374 120 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=2432.000000 s mm10.chrUn_GL456394 3940 10 + 24323 AGAATCACAA s rn5.chr14 30820975 10 + 115151701 agaatgacaa i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 1316 10 + 1524 ataaccacta i micMur1.scaffold_107239 C 0 C 0 s felCat5.chrB1 157754494 10 + 205241052 ttaatcacaa i felCat5.chrB1 I 120 I 4691 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-112.000000 s mm10.chrUn_GL456394 3950 2 + 24323 GC s rn5.chr14 30820985 2 + 115151701 gg i rn5.chr14 C 0 C 0 s micMur1.scaffold_107239 1326 2 + 1524 ac i micMur1.scaffold_107239 C 0 N 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=14545.000000 s mm10.chrUn_GL456394 3952 359 + 24323 AGCC------------------------------------GGAAAATGCACAATAATTGACTATCTAATACCATATAGATTGCACTGATGAGTATGTGCGTGcacacacacactcacactaacacacacactcacacaggcacacacacacacaaacacacacatgcacgcatacaggcacacacaAATGCATATATTGAGATAAT-TGTATAGGTTGTATTGGAATTCTGTTATTTTAGCTGTCAAAATTTCCCCATATGTAAGAGCAAGGACAGAGATCTCTTTAGGCTTCTTAGGGCTTCCTCAACATGACAACTAGAGCCACAATTCTCACTAAAAGAGTTCCTATAAAGCTCACAAAGAT-ATTTAAAGATTCTACTTCCTTACAATTTTAT s rn5.chr14 30820987 357 + 115151701 gacctggcaatgccgagagaaggaaaaatagccttacagaaggaaaagcacactaattgtctatctaataccagaaaattagtactgaa-------------------------------aaTacacatacacacacacgcatgcacatgtgcacacacacaaatgcaagcacacacacttGCACACATA-----ATGGGGAAACTCTCTATAGGATGTGTTGAAATTCTGTCATTTTAGCTGTCACCACTTTCCTGTAT-TAGGAACAAGGACAGAGATCTCTTTAGGCTTCTTAGGGCTTCATCAACATGACGA---GAGTCACAATTCTCACTGAGAGAGTTCCCATGAAGCTCACAAAGATTAGTTAAAGATTTTGCTTACTTACAATGTTAt i rn5.chr14 C 0 I 206 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 26179 3743 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-1750.000000 s mm10.chrUn_GL456394 4311 2 + 24323 T---T s rn5.chr14 30821550 5 + 115151701 TATGT i rn5.chr14 I 206 C 0 s tupBel1.scaffold_120217.1-71828 29922 2 - 71828 -aa-- i tupBel1.scaffold_120217.1-71828 I 3743 I 59 e macEug2.GL125620 21900 8234 - 57395 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=3466.000000 s mm10.chrUn_GL456394 4313 59 + 24323 AGGAAATTTCAGTTTACCTGACACTTCCTGGCTAAGAACTGTTCTGAGCAGCTACAAAG s rn5.chr14 30821555 57 + 115151701 GTGAAATTTCAGCGTACTTGCCAGCTCCTGGCTAA--ACTGTTCTAAGCAGCTACAAAG i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 29924 59 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=679.000000 s mm10.chrUn_GL456394 4372 12 + 24323 CCCAGTAGCTTG s rn5.chr14 30821612 12 + 115151701 TCTAGTAGCTTA i rn5.chr14 C 0 C 0 s tupBel1.scaffold_120217.1-71828 29983 12 - 71828 ggctgtggtttc i tupBel1.scaffold_120217.1-71828 I 59 I 127 e macEug2.GL125620 21900 8234 - 57395 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=6689.000000 s mm10.chrUn_GL456394 4384 117 + 24323 CCCATAGCCATTAAATGCC-----------ATTATTTTTCTACATTCAGTAGGACCCTATCTTTCCTTTTCTTCTCCTTGTAGGCTGATAAGATGGAATCTTGTACAATATAATAATAGTCTCAGGAG s rn5.chr14 30821624 127 + 115151701 CCCATAGTCATTAAATGCCTTTTTTTTATTATTATTTTTC-AAATTCAGTAGGGCCCTGTCTTTCCTTCTGCTGTCCTTGGAAGCTGAGAGGATGGAGTCTTGTATGACATAATATTAGACTCAGGTG i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 29995 127 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=426.000000 s mm10.chrUn_GL456394 4501 5 + 24323 TGTGC s rn5.chr14 30821751 5 + 115151701 TGTCC i rn5.chr14 C 0 C 0 s tupBel1.scaffold_120217.1-71828 30122 5 - 71828 TCTTC i tupBel1.scaffold_120217.1-71828 I 127 I 80 e macEug2.GL125620 21900 8234 - 57395 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=4778.000000 s mm10.chrUn_GL456394 4506 73 + 24323 ATAATAGTCAGAGATCTATTAGGCTATCAACTTAAAGAAAAACTTCTTCACAATAGAAAATCATTA-TAAAAGG s rn5.chr14 30821756 74 + 115151701 ATAATAGCCAGAGATCTATTAGGTTATCAACGTTAAAAATAACTTCTTCACAGTAGAAAATTATTAATCAAAGA i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30127 80 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=1117.000000 s mm10.chrUn_GL456394 4579 11 + 24323 TGGGTTAGAAA s rn5.chr14 30821830 11 + 115151701 TGGATAAGAAA i rn5.chr14 C 0 C 0 s tupBel1.scaffold_120217.1-71828 30207 11 - 71828 tgcaccaggga i tupBel1.scaffold_120217.1-71828 I 80 I 115 e macEug2.GL125620 21900 8234 - 57395 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=1348.000000 s mm10.chrUn_GL456394 4590 17 + 24323 ATGGACACCTAAGAGAT s rn5.chr14 30821841 17 + 115151701 ATGAATACCTAAGAGAT i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30218 115 - 71828 I e myoLuc2.GL429902 2537674 1286 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=846.000000 s mm10.chrUn_GL456394 4607 3 + 24323 TGT s rn5.chr14 30821858 3 + 115151701 TGT i rn5.chr14 C 0 I 279 s myoLuc2.GL429902 2538960 3 - 3767281 TGT i myoLuc2.GL429902 I 1286 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30218 115 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=5362.000000 s mm10.chrUn_GL456394 4610 82 + 24323 CTTAATTATTTCTACCACAGTTATGAAGAAAATCAAGCCTCTTCATTTCGAC-CCTTGAGTCTTTACTCATAATGGATT-TACT------------ s rn5.chr14 30822140 83 + 115151701 CTTAATTATTTCTACCACAGTTTTAGAGAAAATCATACCTTTTTGTTTCCATTCCATGAGTCTTTATTCATAGTGGATT-TACT------------ i rn5.chr14 I 279 C 0 s myoLuc2.GL429902 2538963 89 - 3767281 TTGAATAACAACCACCAAA------AAAAAAAAAAAGCATATTCTATATGGC-CCTCAGGTCTCTACACATACTGTATTCTACTCCATTGGTTCTT i myoLuc2.GL429902 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30218 115 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=684.000000 s mm10.chrUn_GL456394 4692 3 + 24323 ACT s rn5.chr14 30822223 3 + 115151701 ACT i rn5.chr14 C 0 C 0 s tupBel1.scaffold_120217.1-71828 30333 3 - 71828 ACC i tupBel1.scaffold_120217.1-71828 I 115 I 3764 s myoLuc2.GL429902 2539052 3 - 3767281 AAT i myoLuc2.GL429902 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=10454.000000 s mm10.chrUn_GL456394 4695 144 + 24323 ATTAAACATGATCTAACTACTTTT-GTGGTATTTAATTCCTTAGCTGTTCCAAATAATGCAAACAAAAA------AAATGGGTGAAAT----TATGGAAAAACAGTCATGTAATAATAACTACAGCACAAA----CGAATAAATATCATTTTCAGAAAT s rn5.chr14 30822226 143 + 115151701 ATTAAACATGATTTAATTATTTTTTGTGGTTTTTAAATCCTTATCTGATCAAAGTAATGTGAA---GAA------AAATGGATGAAAT----TATGGAAAAATATTCATGTAATAATAAATATGTCACAAA---ATTAATAGCGATTATTTTCAGAGAT i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2539055 151 - 3767281 ACTAAACACCAC---ATTATTTTA-GTAGTTTTCCA-TCCTCAGAAGATTAGAGGATCAGAAATATCAAATTCACAAAGGGGAGAAATAGAATATGAAAA---TCTTATGAGATAATGAATATATCAAGGAAGAATGAAATAAAATAATTTTCAGGAAT i myoLuc2.GL429902 C 0 I 87 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=3261.000000 s mm10.chrUn_GL456394 4839 84 + 24323 GTACCAGTTAAGCACTGCTTTGAAGTGACTCACAGGTGAGCACCTACGATTATATCTTCAGATCCTGCACACCTGAGAAACATT s rn5.chr14 30822369 83 + 115151701 GTAACAGTTAGTCACAGCTTTGAAATGACTGACAGGTGAGCAATGGGGGTCAGGTCTTTTCATCTTGCTCAGTTGAGGATCAT- i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2539206 87 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=11033.000000 s mm10.chrUn_GL456394 4923 82 + 24323 ATGAGGCTGGATCTTAGACATGGGTTCCAATGATATGCAATGACAGGCTGGATGACTCTGGGACCAGTTTAGGAGATGCATG s rn5.chr14 30822452 82 + 115151701 ATGAGACTGGAACTTAGAAGTGGGTTTCAATGATTTGCAATGATAGGATGGGTGACTCTGGGACAAGTTTATGAAATGCACG i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2539293 81 - 3767281 ATTAAGCAGGGACTTAGAAATGGGGTTCAG-GATGTGGTGTGACAGGTTATTTGATTATGGGACTTTCTTGAGATATGCATG i myoLuc2.GL429902 I 87 I 1109 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=25413.000000 s mm10.chrUn_GL456394 5005 407 + 24323 CTTCAG--TTAATGGTTAGCCTTGGCCAAGTGTAAATGTCTTACACCGGAGGTGATGCTGAAACCCATCACCTTTAGAAGCCAGCCCTGGAGTTTACAGGGCATCTGTGCAGTCATGAGTGTAAGATGGGTCACATAATTCATCTACCACCTGGGTGGGAGGATGATAGCACTTATTTGAAGAATTATGATGATTAAGTTTTAATCATGTAATTTGATAAGTGTAAGTCTAGCATATATTAGATAACTGTCTATCATGAT---GTTCCATTTAAAATTGTTACTCATTAAGATAATTT--AGCATACAATGTTCTGTACTCTCAAGGAGTGAATAGATTTTTGTAAAAATTCAGACTGACCAATTTTGCCTTATGTTCTTCGTATCTCTTCCTATGAAACATTCCACATACAGA s rn5.chr14 30822534 410 + 115151701 CTTTAGAGTTGATGTTTAACCTTGGCAAAGAGTAAAGGTCTTACACTGGAGGTAATGCTGAAACTCATCACTTTTAGAAGCCGACCCTG-AGTTCTCAGTGCATCCATGGAGTAGTGAATGTGAGATAGGTCACACAATTTATCTACCACATTTAGTGGAGGGTGATAACCCTTATTTGAAGAGTTATGATAATTAAGTATTAATCATGTAATGTACTAACTATAAG---AAAACATATTAGGTATCTGTCTATCATGATTCTGCTCCACTTAAAATTATTACTCATTAAGATAATTTTTCACATACAATTTTCTGTACTCTCAAGGAGTAAATAGATTTTTGTAAAAATTCAAACTGACCAATTTTGCATTATGTTCTTCGTATCACTTCCAATGAAACAATCCACACATGGA i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2539374 1109 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_74799 949 50 - 1128 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-820.000000 s mm10.chrUn_GL456394 5412 1 + 24323 -G s rn5.chr14 30822944 1 + 115151701 -G i rn5.chr14 C 0 C 0 s pteVam1.scaffold_5921 22378 1 - 103762 T- i pteVam1.scaffold_5921 I 7756 I 69 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2539374 1109 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=3885.000000 s mm10.chrUn_GL456394 5413 71 + 24323 CATTCCGTTGTAGAAAGGCTGTATATTTGGCTGAAAGGCACAACACCTCTGTGTTACTTCTTAATTTGCAT s rn5.chr14 30822945 71 + 115151701 AACCCTGCAGTCGTTAGGCTGTATACTTGGCTGAAAGTCTTGATACCTCTGTGCTACTTCTTAATATGCAT i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2539374 1109 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22379 69 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=38.000000 s mm10.chrUn_GL456394 5484 1 + 24323 G s rn5.chr14 30823016 1 + 115151701 G i rn5.chr14 C 0 C 0 s pteVam1.scaffold_5921 22448 1 - 103762 A i pteVam1.scaffold_5921 I 69 I 10 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2539374 1109 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=815.000000 s mm10.chrUn_GL456394 5485 10 + 24323 ATAAGGAAGC s rn5.chr14 30823017 10 + 115151701 ATAAAGAAGC i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2539374 1109 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22449 10 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=561.000000 s mm10.chrUn_GL456394 5495 6 + 24323 ATTCTA s rn5.chr14 30823027 6 + 115151701 ATTCTG i rn5.chr14 C 0 C 0 s pteVam1.scaffold_5921 22459 6 - 103762 ATTGGA i pteVam1.scaffold_5921 I 10 I 10 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2539374 1109 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-123.000000 s mm10.chrUn_GL456394 5501 1 + 24323 T s rn5.chr14 30823033 1 + 115151701 A i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2539374 1109 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22465 10 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=38.000000 s mm10.chrUn_GL456394 5502 1 + 24323 C s rn5.chr14 30823034 1 + 115151701 C i rn5.chr14 C 0 C 0 s pteVam1.scaffold_5921 22475 1 - 103762 T i pteVam1.scaffold_5921 I 10 I 95 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2539374 1109 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=4363.000000 s mm10.chrUn_GL456394 5503 77 + 24323 CCTTTAGCTTACACACTGAATACATGCAAGCACAGTC--TTTTTCAGCTTTGGGCACTTGCCATGTCTGCAGGAACACC s rn5.chr14 30823035 79 + 115151701 CCTTTAGCTTACGTACTGAATACATGCAATCACAGTCTTTTTTTCAGAGTTCGGCACTTACCCATGCTTCAGGAACAAC i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2539374 1109 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22476 95 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=38.000000 s mm10.chrUn_GL456394 5580 1 + 24323 C s rn5.chr14 30823114 1 + 115151701 C i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2540483 1 - 3767281 T i myoLuc2.GL429902 I 1109 I 1 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22476 95 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=1224.000000 s mm10.chrUn_GL456394 5581 8 + 24323 AGGGTCCA s rn5.chr14 30823115 8 + 115151701 AGGGTTTC i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2540485 8 - 3767281 AGGTCACA i myoLuc2.GL429902 I 1 I 9 s pteVam1.scaffold_5921 22571 8 - 103762 aggacaca i pteVam1.scaffold_5921 I 95 I 20 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=1780.000000 s mm10.chrUn_GL456394 5589 15 + 24323 TTTGCTTATCTTTTT s rn5.chr14 30823123 15 + 115151701 TTTGTTTATCATGTC i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2540502 13 - 3767281 --TTtttatcttatt i myoLuc2.GL429902 I 9 I 86 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22579 20 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=329.000000 s mm10.chrUn_GL456394 5604 17 + 24323 AGTCTTCAACCAATA--AC s rn5.chr14 30823138 19 + 115151701 AGTCATAGACTAATATTAT i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540515 86 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22579 20 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-382.000000 s mm10.chrUn_GL456394 5621 41 + 24323 ATTT-GTAGCAAAGTTTCACAAAActctctctctctctctct s rn5.chr14 30823157 24 + 115151701 ACTT-GTAGCAAATTTTCACAGAac----------------- i rn5.chr14 C 0 C 0 s pteVam1.scaffold_5921 22599 18 - 103762 attgagtttcaaatttcc------------------------ i pteVam1.scaffold_5921 I 20 I 13 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540515 86 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=60.000000 s mm10.chrUn_GL456394 5662 14 + 24323 ctctctatatatat s rn5.chr14 30823181 8 + 115151701 ------acacacac i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540515 86 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22617 13 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-219.000000 s mm10.chrUn_GL456394 5676 13 + 24323 --atatatatatata s rn5.chr14 30823189 13 + 115151701 --acacataaacaca i rn5.chr14 C 0 C 0 s pteVam1.scaffold_5921 22630 13 - 103762 gtgtatattacta-- i pteVam1.scaffold_5921 I 13 I 214 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540515 86 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-31.000000 s mm10.chrUn_GL456394 5689 3 + 24323 tat s rn5.chr14 30823202 3 + 115151701 cac i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2540601 1 - 3767281 --T i myoLuc2.GL429902 I 86 I 2 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22643 214 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-584.000000 s mm10.chrUn_GL456394 5692 5 + 24323 atata s rn5.chr14 30823205 5 + 115151701 acaca i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2540604 4 - 3767281 ATTC- i myoLuc2.GL429902 I 2 I 15 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22643 214 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-480.000000 s mm10.chrUn_GL456394 5697 16 + 24323 tatatatatatataaa s rn5.chr14 30823210 5 + 115151701 T-----------TCAA i rn5.chr14 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540608 15 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22643 214 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-3053.000000 s mm10.chrUn_GL456394 5713 23 + 24323 tataA--AAAGAgtgtgtgtgtgtg- s rn5.chr14 30823215 3 + 115151701 TAT----------------------- i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2540623 22 - 3767281 ----GCTAAAAGGTGTTTTCTATTGC i myoLuc2.GL429902 I 15 I 73 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22643 214 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=0.000000 s mm10.chrUn_GL456394 5736 9 + 24323 tgtgtgtgt e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540645 73 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22643 214 - 103762 I e rn5.chr14 30823218 0 + 115151701 C e oviAri1.chr6 47691818 14790 - 129067040 I a score=6305.000000 s mm10.chrUn_GL456394 5745 88 + 24323 gtgtgtgtATTCAAGTTAAAAGACTCCAAATAGAAGAAGTTTT---G-TTTTCTTTAGTTTGTGCATATTTTTATTAAATAATGTGGAAAAG s rn5.chr14 30823218 82 + 115151701 -----TATATTCAAATT-AAAGAATTCAACTAGGAGTGGTTTT---GTTTTTCTTTAGTTTGTTCATATTTTTATTACAT-ATATGGAAAAG i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 1971 81 - 11972 GTCTTTGAATTCCACTTTACAGATTCCAGCAATAAACAGTTTCTGGG-TTTTCTTTATTTTG----------CATTTGAGAATGTAAAGAAG i dipOrd1.scaffold_38642 N 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540645 73 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22643 214 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-1541.000000 s mm10.chrUn_GL456394 5833 6 + 24323 GCCTAA- s rn5.chr14 30823300 6 + 115151701 GAATTA- i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2052 6 - 11972 GTAGAA- i dipOrd1.scaffold_38642 C 0 C 0 s myoLuc2.GL429902 2540718 6 - 3767281 -GATGAG i myoLuc2.GL429902 I 73 I 46 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22643 214 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-116.000000 s mm10.chrUn_GL456394 5839 41 + 24323 CTAGAAGCTGGA------AGGTATAATGGATAC-------CCACCTCTTTAAAC s rn5.chr14 30823306 41 + 115151701 CAGGAAGATGAA------AGGTAAAAGGTATAC-------ACATCTCTAAACAT i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2058 54 - 11972 TAAGAAGTTGGAGACCTGAGATCACAATGAGACTTGATTGTCACTGAGTTATAG i dipOrd1.scaffold_38642 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540724 46 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22643 214 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=794.000000 s mm10.chrUn_GL456394 5880 5 + 24323 TGAAA s rn5.chr14 30823347 5 + 115151701 TAAAC i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2112 5 - 11972 TCAAA i dipOrd1.scaffold_38642 C 0 C 0 s myoLuc2.GL429902 2540770 5 - 3767281 CCAAA i myoLuc2.GL429902 I 46 I 72 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22643 214 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=204.000000 s mm10.chrUn_GL456394 5885 6 + 24323 ACACAA s rn5.chr14 30823352 5 + 115151701 A-AAAA i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2117 6 - 11972 ACACAA i dipOrd1.scaffold_38642 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540775 72 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157754504 4691 + 205241052 I e pteVam1.scaffold_5921 22643 214 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-2637.000000 s mm10.chrUn_GL456394 5891 3 + 24323 --AT-A s rn5.chr14 30823357 3 + 115151701 --AT-A i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2123 4 - 11972 --GTGA i dipOrd1.scaffold_38642 C 0 C 0 s felCat5.chrB1 157759195 3 + 205241052 CTG--- i felCat5.chrB1 I 4691 I 526 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540775 72 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e pteVam1.scaffold_5921 22643 214 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-244.000000 s mm10.chrUn_GL456394 5894 20 + 24323 TCATTGACATAAGG------CACTGC s rn5.chr14 30823360 20 + 115151701 TCATTGGTAAAAGA------TACTGG i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2127 26 - 11972 ACATTTGTACCTAGCTTTTCCTTTGA i dipOrd1.scaffold_38642 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540775 72 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22643 214 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-93.000000 s mm10.chrUn_GL456394 5914 8 + 24323 AAATTTAC s rn5.chr14 30823380 8 + 115151701 AAATACAA i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2153 8 - 11972 ATATGCAG i dipOrd1.scaffold_38642 C 0 C 0 s pteVam1.scaffold_5921 22857 7 - 103762 -CCTTTAT i pteVam1.scaffold_5921 I 214 I 653 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540775 72 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=21.000000 s mm10.chrUn_GL456394 5922 18 + 24323 GTACAGAAACAGAGTACC s rn5.chr14 30823388 16 + 115151701 ATACAATAAC--AGTACA i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2161 18 - 11972 ATAGGTCACCTGAGAGCA i dipOrd1.scaffold_38642 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540775 72 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=374.000000 s mm10.chrUn_GL456394 5940 4 + 24323 ATCT s rn5.chr14 30823404 4 + 115151701 ATCA i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2179 4 - 11972 ATTA i dipOrd1.scaffold_38642 C 0 C 0 s myoLuc2.GL429902 2540847 4 - 3767281 CTCT i myoLuc2.GL429902 I 72 I 10 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-83.000000 s mm10.chrUn_GL456394 5944 10 + 24323 TACTTATAAC--- s rn5.chr14 30823408 10 + 115151701 TACTTGTTAC--- i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2183 13 - 11972 CTCTTCTTGCTCT i dipOrd1.scaffold_38642 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540851 10 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=134.000000 s mm10.chrUn_GL456394 5954 2 + 24323 AG s rn5.chr14 30823418 2 + 115151701 AG i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2196 2 - 11972 GA i dipOrd1.scaffold_38642 C 0 C 0 s myoLuc2.GL429902 2540861 2 - 3767281 GA i myoLuc2.GL429902 I 10 I 2082 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=3265.000000 s mm10.chrUn_GL456394 5956 72 + 24323 TATACAATTTCCAGAATGAATTCATCAAGATATAGAAGAGTATCCCACTTACATGGATGA--------TCCCTGTTTCAC s rn5.chr14 30823420 72 + 115151701 TATACAATTTTCAGAGTGAATTCCTCAAGATATTCATGGAT-----ACTTACATGGATCCATT---TTTTACTCTATGAC i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2198 80 - 11972 TATACCATGCTTAGAATGAATTGACAGGGAGATTAAAGAATTGCTTACTTATGTGGAAGTCTCCAGTTACCTAATTTTTA i dipOrd1.scaffold_38642 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=546.000000 s mm10.chrUn_GL456394 6028 1 + 24323 T s rn5.chr14 30823492 1 + 115151701 T i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2278 1 - 11972 T i dipOrd1.scaffold_38642 C 0 C 0 s choHof1.scaffold_135842 4213 1 + 4907 T i choHof1.scaffold_135842 N 0 I 216 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=2009.000000 s mm10.chrUn_GL456394 6029 30 + 24323 TCATAATCTTATGACAATGCAGGCCCTGTT s rn5.chr14 30823493 26 + 115151701 TCATTATCTTATAACAATTCACACCC---- i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2279 26 - 11972 TCAAAATTATTTGACTATTCAGATTC---- i dipOrd1.scaffold_38642 C 0 C 0 e macEug2.GL125620 21900 8234 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e choHof1.scaffold_135842 4214 216 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=91.000000 s mm10.chrUn_GL456394 6059 1 + 24323 T s macEug2.GL125620 30134 1 - 57395 T i macEug2.GL125620 I 8234 C 0 e dipOrd1.scaffold_38642 2305 0 - 11972 C e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e choHof1.scaffold_135842 4214 216 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e rn5.chr14 30823519 0 + 115151701 C e oviAri1.chr6 47691818 14790 - 129067040 I a score=2240.000000 s mm10.chrUn_GL456394 6060 9 + 24323 TGTTTCTCT s rn5.chr14 30823519 9 + 115151701 CATTTCTCT i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2305 9 - 11972 CATCTCTTC i dipOrd1.scaffold_38642 C 0 C 0 s eriEur1.scaffold_223799 5035 9 + 5838 TGTCTCTCC i eriEur1.scaffold_223799 N 0 C 0 s macEug2.GL125620 30135 9 - 57395 TGATTTTGA i macEug2.GL125620 C 0 I 162 e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e choHof1.scaffold_135842 4214 216 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=43190.000000 s mm10.chrUn_GL456394 6069 160 + 24323 AGTGAGCTTGGTTTCTGCCTTTTCACAGTTGAAGAATTTCAAATTTTTCTTCAAAAGGCTTTAGGAATGAAGTGATTTGATTAGCCC-AGTCTAATGGAGCTGAAACAACCAAGTAA----GAGTGTTTATTAATTTGTTCCTAGTAATTCAAGCTTTAT-TTTGA s rn5.chr14 30823528 158 + 115151701 AGTGAGCTTACTTTCTGCCTTGACATAGTTGGAGGATTTCAAATTTATCTTCTGAAAGCTTTAGGAAAGGAGCCATTTGATTACTCCAAGTTTAATGGAGCCGAAACAGCCGAGTAA----GAGTGTTTATTAATTTGTTT---GGATTTCAAGTTATAT-TTTGA i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2314 162 - 11972 AGTGAGCTTTGTTTCTGTATTTTCACAGTTGAAGGCCTCTAAACTTATCTTCTCCAGGCTTCAAGAATGAGGTGATTTGATTACTTT-AGTTTAATGGAGCTTAAACAAGCAAATAAGTATGAGGGTGACTTAATTTGTTT---GGAATTCAAGTTTTCTATTTGA i dipOrd1.scaffold_38642 C 0 C 0 s eriEur1.scaffold_223799 5044 159 + 5838 AGTAAACTTTGCTTCTGTACTTACACAGTTGAAGGCATTTAAACATGTCATTTGAAAGCTTTAGGAATGAAATTATTTGATTACTTT-AGT-TAATGGAGCTGAAACATGACAATATGTA-AAAAGTTAATTAATCTGTTT----AAATCCAAGTTTCATTTTTGA i eriEur1.scaffold_223799 C 0 C 0 e macEug2.GL125620 30144 162 - 57395 I e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e choHof1.scaffold_135842 4214 216 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=4633.000000 s mm10.chrUn_GL456394 6229 11 + 24323 GCTGACTGTAA s rn5.chr14 30823686 11 + 115151701 GTTGACTGTAA i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2476 11 - 11972 ATTGAGTAAAA i dipOrd1.scaffold_38642 C 0 C 0 s eriEur1.scaffold_223799 5203 11 + 5838 ATTGCatataa i eriEur1.scaffold_223799 C 0 C 0 s macEug2.GL125620 30306 11 - 57395 ATTGAGTACAA i macEug2.GL125620 I 162 N 0 e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e choHof1.scaffold_135842 4214 216 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=-1463.000000 s mm10.chrUn_GL456394 6240 3 + 24323 -AAA-- s rn5.chr14 30823697 3 + 115151701 -AAT-- i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2487 4 - 11972 GAAT-- i dipOrd1.scaffold_38642 C 0 C 0 s eriEur1.scaffold_223799 5214 3 + 5838 -aga-- i eriEur1.scaffold_223799 C 0 C 0 s choHof1.scaffold_135842 4430 5 + 4907 -AGCAG i choHof1.scaffold_135842 I 216 I 5 e tupBel1.scaffold_120217.1-71828 30336 3764 - 71828 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=1460.000000 s mm10.chrUn_GL456394 6243 5 + 24323 CAGAT s rn5.chr14 30823700 5 + 115151701 CAGAA i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2491 5 - 11972 CAAAG i dipOrd1.scaffold_38642 C 0 C 0 s tupBel1.scaffold_120217.1-71828 34100 5 - 71828 CAAAA i tupBel1.scaffold_120217.1-71828 I 3764 C 0 s eriEur1.scaffold_223799 5217 2 + 5838 ---aa i eriEur1.scaffold_223799 C 0 C 0 e choHof1.scaffold_135842 4435 5 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=3861.000000 s mm10.chrUn_GL456394 6248 6 + 24323 ATAAAG s rn5.chr14 30823705 6 + 115151701 ATAGGA i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 2496 6 - 11972 GCAAAA i dipOrd1.scaffold_38642 C 0 I 10 s tupBel1.scaffold_120217.1-71828 34105 6 - 71828 GCAAAA i tupBel1.scaffold_120217.1-71828 C 0 I 146 s eriEur1.scaffold_223799 5219 6 + 5838 ataaga i eriEur1.scaffold_223799 C 0 I 23 s choHof1.scaffold_135842 4440 6 + 4907 GCAAAA i choHof1.scaffold_135842 I 5 I 243 e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=12502.000000 s mm10.chrUn_GL456394 6254 131 + 24323 AGCAT-GGGGCAATCTGAAGAGTACAAACAAATTATTATTCA---CT-ATTGTGGTTTAGTATGTCAAGATCTGTGAAGGCA--GTCATACAGTTATGAGTTTTAATTGTTTC--ATACTCAAACA-------ATAATTTGGAATCA s rn5.chr14 30823711 133 + 115151701 AGAAT-GGGGTATTCTGAAGAGTACAAATAAATTAGCTTGTAAACCT-ATTATGACTTAGTTTGTCAAAATCTGTGAAGGC---GTCATAGAGTTATGAGTTTTAATTATTTC--ATACTCAAACA-------ATAATTTGTAGTCA i rn5.chr14 C 0 I 6 s dipOrd1.scaffold_38642 2512 136 - 11972 AGCGTGGGGGCAATTTTAAGAGCACTAACTAATTAGCTTATAAAACTGATAGCTTTGTAGTTTCTAAAGGTCTCTAAACCCAGTGTC----TATTATGAGCCTTAATGTGTCCTAAAACAAAAACC-------ATAATCTGTAATCA i dipOrd1.scaffold_38642 I 10 I 5871 s eriEur1.scaffold_223799 5248 133 + 5838 AGTTT-TAGAAAGTTTTGAGAGCACTAAGTAATGAGATTATATACAT------GCTATGGTTTGTAGAATTTTCTAAACCAA--GTTGGATAGTAAAAACTTTACATTG---C--ATGCCTAAATCTATAGGTACACATTGTACTCA i eriEur1.scaffold_223799 I 23 I 6 e tupBel1.scaffold_120217.1-71828 34111 146 - 71828 I e choHof1.scaffold_135842 4446 243 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759198 526 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=180.000000 s mm10.chrUn_GL456394 6385 1 + 24323 A s rn5.chr14 30823850 1 + 115151701 G i rn5.chr14 I 6 C 0 s felCat5.chrB1 157759724 1 + 205241052 A i felCat5.chrB1 I 526 I 151 s eriEur1.scaffold_223799 5387 1 + 5838 A i eriEur1.scaffold_223799 I 6 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34111 146 - 71828 I e choHof1.scaffold_135842 4446 243 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=691.000000 s mm10.chrUn_GL456394 6386 4 + 24323 ACTT s rn5.chr14 30823851 4 + 115151701 ACTT i rn5.chr14 C 0 C 0 s eriEur1.scaffold_223799 5388 4 + 5838 ACTA i eriEur1.scaffold_223799 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34111 146 - 71828 I e choHof1.scaffold_135842 4446 243 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=455.000000 s mm10.chrUn_GL456394 6390 6 + 24323 GAAATC s rn5.chr14 30823855 6 + 115151701 GAAAAC i rn5.chr14 C 0 C 0 s tupBel1.scaffold_120217.1-71828 34257 6 - 71828 GTGATT i tupBel1.scaffold_120217.1-71828 I 146 I 98 s eriEur1.scaffold_223799 5392 6 + 5838 GAAGTA i eriEur1.scaffold_223799 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e choHof1.scaffold_135842 4446 243 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=1546.000000 s mm10.chrUn_GL456394 6396 53 + 24323 TACTGAGAGAATTGTGTGCATTGTTATCATCAAATACTTGAGATCATGTTAAT---- s rn5.chr14 30823861 52 + 115151701 TACTGAGAGAATTGCATACA-TGTGATCTTTAACTTTATGAGATTATGCCAAT---- i rn5.chr14 C 0 C 0 s eriEur1.scaffold_223799 5398 51 + 5838 TATTGACA-----ATATGAACTGCCATCTTTTATCATAGGAAACT-TGTCCATTTAT i eriEur1.scaffold_223799 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34263 98 - 71828 I e choHof1.scaffold_135842 4446 243 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e oviAri1.chr6 47691818 14790 - 129067040 I a score=483.000000 s mm10.chrUn_GL456394 6449 4 + 24323 TATA s rn5.chr14 30823913 4 + 115151701 TATA i rn5.chr14 C 0 C 0 s oviAri1.chr6 47706608 4 - 129067040 TGTT i oviAri1.chr6 I 14790 N 0 s eriEur1.scaffold_223799 5449 4 + 5838 TGCT i eriEur1.scaffold_223799 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34263 98 - 71828 I e choHof1.scaffold_135842 4446 243 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I a score=1629.000000 s mm10.chrUn_GL456394 6453 13 + 24323 AAATTTGTACTTT s rn5.chr14 30823917 13 + 115151701 AAATTTCTACCTG i rn5.chr14 C 0 C 0 s eriEur1.scaffold_223799 5453 13 + 5838 GAATTTATATTCT i eriEur1.scaffold_223799 C 0 N 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34263 98 - 71828 I e choHof1.scaffold_135842 4446 243 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I a score=100.000000 s mm10.chrUn_GL456394 6466 1 + 24323 G s rn5.chr14 30823930 1 + 115151701 G i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34263 98 - 71828 I e choHof1.scaffold_135842 4446 243 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I a score=-829.000000 s mm10.chrUn_GL456394 6467 1 + 24323 -A s rn5.chr14 30823931 1 + 115151701 -A i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 3953 1 - 155134 T- i vicPac1.scaffold_2771 N 0 I 490 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34263 98 - 71828 I e choHof1.scaffold_135842 4446 243 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I a score=151.000000 s mm10.chrUn_GL456394 6468 3 + 24323 ACT s rn5.chr14 30823932 3 + 115151701 ATT i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34263 98 - 71828 I e choHof1.scaffold_135842 4446 243 + 4907 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I a score=38.000000 s mm10.chrUn_GL456394 6471 1 + 24323 C s rn5.chr14 30823935 1 + 115151701 T i rn5.chr14 C 0 C 0 s choHof1.scaffold_135842 4689 1 + 4907 C i choHof1.scaffold_135842 I 243 N 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34263 98 - 71828 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I a score=0.000000 s mm10.chrUn_GL456394 6472 7 + 24323 ATATATA e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34263 98 - 71828 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I e rn5.chr14 30823936 0 + 115151701 C a score=118.000000 s mm10.chrUn_GL456394 6479 2 + 24323 TT s rn5.chr14 30823936 2 + 115151701 TA i rn5.chr14 C 0 C 0 s tupBel1.scaffold_120217.1-71828 34361 2 - 71828 TA i tupBel1.scaffold_120217.1-71828 I 98 I 50 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I a score=2970.000000 s mm10.chrUn_GL456394 6481 47 + 24323 AAATTTTCATCCTCATTTTAGTGAATTTTATCATATTAACTTCCTAA s rn5.chr14 30823938 47 + 115151701 TAATTTTCTTCCTCATTTTAGTTATTGTTATCATACTAACTTCATAA i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34363 50 - 71828 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I e pteVam1.scaffold_5921 22864 653 - 103762 I a score=156.000000 s mm10.chrUn_GL456394 6528 3 + 24323 GTA s rn5.chr14 30823985 3 + 115151701 ATA i rn5.chr14 C 0 C 0 s pteVam1.scaffold_5921 23517 3 - 103762 GTT i pteVam1.scaffold_5921 I 653 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34363 50 - 71828 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I a score=180.000000 s mm10.chrUn_GL456394 6531 1 + 24323 T s rn5.chr14 30823988 1 + 115151701 C i rn5.chr14 C 0 C 0 s tupBel1.scaffold_120217.1-71828 34413 1 - 71828 T i tupBel1.scaffold_120217.1-71828 I 50 C 0 s pteVam1.scaffold_5921 23520 1 - 103762 T i pteVam1.scaffold_5921 C 0 N 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759725 151 + 205241052 I a score=726.000000 s mm10.chrUn_GL456394 6532 2 + 24323 TA s rn5.chr14 30823989 2 + 115151701 TA i rn5.chr14 C 0 C 0 s tupBel1.scaffold_120217.1-71828 34414 2 - 71828 TG i tupBel1.scaffold_120217.1-71828 C 0 I 7 s felCat5.chrB1 157759876 2 + 205241052 TA i felCat5.chrB1 I 151 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=136.000000 s mm10.chrUn_GL456394 6534 2 + 24323 TA s rn5.chr14 30823991 2 + 115151701 GA i rn5.chr14 C 0 C 0 s felCat5.chrB1 157759878 2 + 205241052 TA i felCat5.chrB1 C 0 I 37 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34416 7 - 71828 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=-31.000000 s mm10.chrUn_GL456394 6536 1 + 24323 A s rn5.chr14 30823993 1 + 115151701 G i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34416 7 - 71828 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759880 37 + 205241052 I a score=-1588.000000 s mm10.chrUn_GL456394 6537 8 + 24323 AA----------CAGTGA--- s rn5.chr14 30823994 18 + 115151701 CAAAGGTAGTCTCAGTGA--- i rn5.chr14 C 0 C 0 s tupBel1.scaffold_120217.1-71828 34423 8 - 71828 -------------AATAATCT i tupBel1.scaffold_120217.1-71828 I 7 I 24 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759880 37 + 205241052 I a score=952.000000 s mm10.chrUn_GL456394 6545 15 + 24323 TTGTGCTTATAATAG s rn5.chr14 30824012 15 + 115151701 TTGTGCTTACAGGAG i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tupBel1.scaffold_120217.1-71828 34431 24 - 71828 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759880 37 + 205241052 I a score=387.000000 s mm10.chrUn_GL456394 6560 2 + 24323 GG s rn5.chr14 30824027 2 + 115151701 AG i rn5.chr14 C 0 C 0 s tupBel1.scaffold_120217.1-71828 34455 2 - 71828 AG i tupBel1.scaffold_120217.1-71828 I 24 N 0 s felCat5.chrB1 157759917 2 + 205241052 AA i felCat5.chrB1 I 37 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=846.000000 s mm10.chrUn_GL456394 6562 3 + 24323 ACT s rn5.chr14 30824029 3 + 115151701 ACT i rn5.chr14 C 0 C 0 s felCat5.chrB1 157759919 3 + 205241052 ACT i felCat5.chrB1 C 0 I 30 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=1842.000000 s mm10.chrUn_GL456394 6565 22 + 24323 TAGAAAATGCAACCACTAAATA s rn5.chr14 30824032 22 + 115151701 TAGAAAATGCAAACACTAAATA i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759922 30 + 205241052 I a score=0.000000 s mm10.chrUn_GL456394 6587 3 + 24323 AAA e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e felCat5.chrB1 157759922 30 + 205241052 I e rn5.chr14 30824054 0 + 115151701 C a score=-31.000000 s mm10.chrUn_GL456394 6590 1 + 24323 c s felCat5.chrB1 157759952 1 + 205241052 T i felCat5.chrB1 I 30 N 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e rn5.chr14 30824054 0 + 115151701 C a score=0.000000 s mm10.chrUn_GL456394 6591 282 + 24323 aaactttgtctttgtaactccttccatgagtatttatttctctattctatggaggaatgaagtgaggaattaagtatccatgctttggtattccttcttctttgttttcttgtgttttgcagattgtatattgggtattctaggttttggggctgagatccacttatcagtgagtgcatatcaagtgacttcttttgtgattgagttacctaactcaggatgaaatcctcaaaatctatccatttgcccaagaatttaatgaattcattgattttCTTTAAG e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e rn5.chr14 30824054 0 + 115151701 C a score=4533.000000 s mm10.chrUn_GL456394 6873 58 + 24323 AAACATGCAGTGTATATTTATAAAGTCCATTACTTCAATTAATTACGTTATTTTAATT s rn5.chr14 30824054 58 + 115151701 AAACATCCAGTGTACATTTATGAAGTCCATTACTTTAATTAATTGCATTATTTTAATT i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=0.000000 s mm10.chrUn_GL456394 6931 6537 + 24323 AAGTTAtgtagcctcccctcccccagcattaatggttccactgtttacacctggatggtgcttgctgctcaatcgttctgccacacccactgctggaacctgcagcttttctgttcagagccatacacgtggtcaccctgctactggaccccaggattatttggtgggaatcggccccccttcccctccttcataactggcgtggttggaaaaataaaattgagctttgatcagagtacattttgacttggctctgttctttcttccatccgtttagttcccctctttcagcctgagctgccatttcagttgaactgttcctcgagagctgctggtcggcccacaacaGtttggcgccagaatggggacctgaagaatggcagaaggatgctgagagaatgctgtctgtgtggagctccactggaaaggcaaagggtcttcgtattaggcaacgagcaggtacatatgctagcactagcttaaaatgttcatttttgtaaagtgttgctgagggtgcggtaggatacaaactaagcttaaattggtgctaacccaacgctggttttgctttggtcagcagcatgttaatcagaactagaaactggaatcaggaggtcgtccgcagcttttaggaaactgtttcagatgggagagggtatggtttagagttatggatcaggcggttgtacttagttttcaggagctgtttcaggccagaggagtaaggcttgaagtacaattggtaagaaattttttaggtaagataaatagctgttgcccatggttcaaggaagaagaaacagtagattgcggaacctgggagaaaattggtgaggccttaaaaatcgttcaggcagataattttaccttaggccctctgggtgcttgtaaatgatgttataaaagatgccacttctccaggggttaaattgttcccaggcagagcttgtagaatctcaggaggagtgcctatcagagagggcctcctcagaaaaaggtcctcttaactcaaatattgataaatgtggaaactctgatgatgaactgatttctaacaaaaatcactcagatagaggagctgcccattattttaatgagaactggttctcttgtgaatctcccgctccacctatggtccccacctccggaggtgctactcatagagacacgtgactaagcaaattagagtttgaaattaagcttcataggctgactaatgagctttgggagctaaaatagatgtcagaagcagagaggagtaactcttctgaagttcaccaagtgccgctagaaagagctgtgagtcaggctcatggggtagtacagaatacacctaatacgctagcctttcctgtggtcgaggtagttgatcagcaagatactagggccagacattaccagactttgaatttcaagttgataaaagagttaaaaatggctgttgtgcaatatggcccttcagcaccattcactcaaccattactggacacagttgtggagtcacacttaactcccttagattggaagactctttgtaaggctactctgtcaggaggagattttttgcttcggcattctgaatggcaagacgccagtaagaaaactgccacttttaatgctcaggctggtaatttagactggtatagcaacatgattttaggagagggtctatatgaggtactgacaaatcagattgattttcatgttgcagtgtacatgcaaattgcgaccgctgcatgccgtgcttggggaagtttgccagtcaaaggaggtattggtggaaatttagctagcattcagcagagttctgatgagccatatcagaactttgtggacaggctattgatttcagctagtagaatccttggtaatttggacacgggaagtcctttcattatgcaattggcttatcagaatgctaatgcaatgtgccgagctgcaattcaaccgcataagggacagacagatttggcaggatatgtccgtctttgcgcagacatggggccgtcctgcgagatcttgcagggaacccacgtgcaagcaatgttctcgtggaaacgagggaataatgcatgctttaaatgtggaagtttggatcattttaaaaataattgtcctaagaacaagggtgccaaggttagacaaacaggccgtgccccaggaatttgtccccaatgcgggaagggccaccactgggcaagagaatgtaagtttaaaccaggggatttgagccgactggtgccgggaaacgaggaaaggggtcagccccagaccccgagttactcaaagaaaacagcttatgggtctataaatctgctacccagccaacaagatcagttcttgagcttgtcaggtcaaatccaggaaatccaagactggacctctattccaccatccacgcatattaaccccagaaatgggagtccaaactctgcctactggaggctttggaccactacctgtagaaacctgtagatttcttttaggatgaagcagttctattgtaaaaggcctgcagaattatccaggtgttataaataatgattatgagggagaaattaaaatcatagctgcttcaccttatggtgttataactgtacccactaatcagagaattgctcaacttactttgatccctttacgccagtcactgaataaattctttaaaaatgagagaggacaaaataactttgactcctctggtgtaaattgggtgcaatctatcactaatcagagacctaaccttaaattgacatttgatggaaaaagctttgaaggattaatagataccggggccaatgtaacaattataagatggcaggactggccctcaaactggcccttgactgatttcataactcattttcaaaggaattgggtatgctagtaacccgaaacgtagttccaaattgctaacctggggcgatgggaatgggaaatcaggaaaaattcatccgtatgttatgtcaaatttgcccgtaactctgtggggaagagatctgttgtcacagatgggcgttattatgtacagttctaaggagatggtgactgagcagacattcaggcagggacccctgcctggtcgtggactaataaagaagggacagggaattaagacttttgaggatcttaaacctcactctaacacaagaggtttaaagtattttcagtagcggccactatcttgcctgcatcccacgccaaaaaaaatccaatggcttaatgataatctggtgtgggtagatcagtggtctttacctaaagagaaaatagaggtagattctttgctagtgcaggagcagttagaagcaggacctttgatagagtctcactctccttggaatgcatccattttcattatcaggaagaaatcgggtaaatggagactgttacaatatttaagaaaagttaatgaaaccatggtacttatgggaactttataaccggggctcccctccctagtagccattcttaagggatattataaaattgttatagatttgaaagattttttctttaccatccctttgcatccaaaggattgtgaaagatttgcttttagtgttccttctataaatttcaaggaacccatgaaaagactcagttagcctaattaacagcagtacttaaggtctttcagtctgtacatgaggcttttaatatctttactgacagtttatatgttgcacaatcagtactcttattggagacctgtggtacgtttaacttcaatatgccgtcaggatctttattttcagaattgcaaaacatcattctcgcccagaaaaatccattttatattggccacatacagtttcactctggtcttcctgggcctctagctgaaggcaatgatcacattgacagagctctaataggagaagccttaattttggatcctgttgctttggcccaacgtgatcatgaaaggtttcatctctctagccataccctaaggctccgaaataagatcactaaggagcaatcgagaatgattgtaaaacaatgtcctaaatgtattacattatctccagtgccacacttaggagtcaatcctagaggccttatgcctaatcatatttggcaaatggatataacccattatgcagaatttggaaaactaaaatatatacatgtttgtatcgatacctgttcaggatttctttttgattctctgcattcaggagaggcttctaaaaatgtaattgatcattgcctgcaagcctttaatgacatgggattgcctaaacttattaagacagataacgggccatcctattctagtaaaaattttatttcattctgtaaggaattcggtatcaaacataaaactggaattccttataaccccttgggaaaaggaatagttgaacatgctcatcacaccttgaagaattggctttttaaaacaaaacaggggcagttatatcccccaaggtcaccaaaggctcatcttgcctttatttgttctaaattttttgcaaactgatattaaaggacagtctgcagcagatcgccactggcatccagttacttccaattcttatgcattggtaaaatggaaggaccagctgactaacgaatggaagggtccagatccggttctaatctggggaaggggttcggtttgtgttttttcacgagaagaagatggatatcggtggctgcccaagggattaattcatcagatgaacagagattctgaatcttctcctatcattcttaggactaaaattcctcttttgcttagaattcaactgggaattcaggctcccagaaaagctgttttcctgctactctctgagccagctcccccacaggaggctggagactaggcttagctttacaatttgcaactgaataaagtatctggacttccccaaaagaagatttgctttgctactttctcattgtctagatcttgtttttcaagcaggtcaatcaacattctccagcaggaccagcgggcgtgcatccccccccccgcccccaagagcacacaggtggcaactgctatcttcattccaaagacattccagcacgtggcttttggtctgggttgaagttttggtttaccaagagggctagaaaagcagatatttcaaatattaaaaaagattggtttatattttgatagacaggcttagtctcttagctggcctttggtttttcacccttgctgttactgcaaggtccccttagttcctcaggctgtgggaataacagagatgaggaggatgacttccagctcctatttcagccaaaaatagtggtgttactaatgacataatttttgtctaggccttgctaaatctgaggttgacaattcttttttaggagctgcataagactcagaattgtgcatactgttttgggatcatacgaatacagtatgggcatcacttgttgcagagaattactgcaggggaaggtccagcttgaccattttctgagttccctgtgtgatatacccggtttggatggaggttggtatctatttccaggcacaaccaaaaatatctaaggctctgtctcccctccccaaaagataccaagagccacaggtgtgggtcgggacagcacccacgggcggaatcgggtcaatttccacccaagccaaggttaaaagcccactcatctatggatgggaaaatcatttgatcaccccagttaagcgtggccttattaaacttaatcaataggggggagagagGTtggagaccgtactgttggaagggcaagcccttcacagcctcccaccctaaaaagccaattggctttgtactatggagccagttgttaccccctcctccctatttcttgcctgtcatccaaaaGTGTGGAGGAATATCAAttcagtgttattcttaataaagtgcatttcaaatttgtacagtcaaccctcgccagggttccaacgatctacttaaaattcaactaggaatttacctattcagtactaattagcattataaagtcagagcctactgctcagggcttttctattagttgtttactaggacagaaagggcagtcttatccagatatggttttccataagaatagttaggaaatcctatggagacaggctttctctttagccctaagaattcaggcagaactattgagcatagataaattattttgcctcaggccagcctttttttttcttttttttattaacaacagggaggagatgtagcctcccctcccccagccttagtggttgcattgtttacacctggatggagcttgctgctcaattgttctgccacacacactgctggaacctgccgttttattgttcggagccatacatgtggtcaccctgctactggactccaggattatttggcgggaattggcccccattctcctccttcataagtgcatgttggaatagtaaaattgagctttgatcagagtctgttttgacttggttctgttctttcttccatccgtttagttcctctctttcagcccgagttgccatctcagttgaactgttcctcgagagctgctggtcgggctgcaaAA e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I e rn5.chr14 30824112 0 + 115151701 C a score=18468.000000 s mm10.chrUn_GL456394 13468 288 + 24323 AAGTTACATACTTCATGTTTATGGTCTGTCTTTTCTAGGATAAGGTAAGAAAATTGGAAAGGCTTTTTAATTCACTGATGTATCTGAGCACCAATAATAGCACAAAGGATATTCACTGCATTGTGCCATATTGCA-------AGACTAGTATTCAGCATCATCTATTAAGCATAAATAGGACTAATGATTGAGAGGTGACTTCAAATTAATATTAATACAAAGAAAAAGAATTACTACAAATGTCACATGAGGAATAAGAAATTCCATATGAGAATAGAAAAAGTTTAGCAGGCA s rn5.chr14 30824112 290 + 115151701 AAGTTTCATACTTCATGTTTATGGTCTGTCTCTCCTA-----AGGTAAGAAAATTGGAAAGGCTTTTTAATTCACTGACGTACCTGAGCACCAACAATAGAACGAAGGATATTCCTTGCATTGTGCCATATTGCATAGTGTAGGGGTAGTATACAGGATCATTTGTGAAGAGTAAATAGGACTAATGCTTTAAAGGTGACTTCATATTGATATAAATGCAAGGGAAAGGAATTACTCCACATCCCATATGAGGAAGCAGAAATTCCACAGGAGAACAGAAAAAGTTTAGCAAGTG i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 3954 490 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=38.000000 s mm10.chrUn_GL456394 13756 1 + 24323 G s rn5.chr14 30824402 1 + 115151701 G i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 4444 1 - 155134 a i vicPac1.scaffold_2771 I 490 I 443 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I a score=2556.000000 s mm10.chrUn_GL456394 13757 80 + 24323 GAT--------------------TGTACCTTTCTGTAAATAGGTATCATATCAAAAAAAAAAAAAGGAAAAAGAAAAGTGTTTATATCAAACATACCTAA s rn5.chr14 30824403 86 + 115151701 GATGATCTGTAAGGCAGATAGGTTGTTCCCTTCAGTAAGTAGCAGTCATACCAAAAAAAAAAA--------------GTGTTTATATCAAACAGACATAA i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=-779.000000 s mm10.chrUn_GL456394 13837 6 + 24323 --AATGCT s rn5.chr14 30824489 6 + 115151701 --GATGAT i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_100794 322 7 - 6663 gggacat- i tarSyr1.scaffold_100794 N 0 I 4 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=-363.000000 s mm10.chrUn_GL456394 13843 4 + 24323 GATC---- s rn5.chr14 30824495 8 + 115151701 CATCCATC i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e tarSyr1.scaffold_100794 329 4 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=302.000000 s mm10.chrUn_GL456394 13847 2 + 24323 AT s rn5.chr14 30824503 2 + 115151701 AT i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_100794 333 2 - 6663 gt i tarSyr1.scaffold_100794 I 4 I 5 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=241.000000 s mm10.chrUn_GL456394 13849 5 + 24323 TAAAA s rn5.chr14 30824505 5 + 115151701 TATAA i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e tarSyr1.scaffold_100794 335 5 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=300.000000 s mm10.chrUn_GL456394 13854 1 + 24323 G s rn5.chr14 30824510 1 + 115151701 G i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_100794 340 1 - 6663 g i tarSyr1.scaffold_100794 I 5 I 162 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=9830.000000 s mm10.chrUn_GL456394 13855 141 + 24323 AAATTTGGTCAGTAAATTGCTTATATAAAAGAACTGAAACAAAATATTTGGTTACATCAGGTGTTAGATTAAATATTTTCTATTTTGCTTCTTTAATGTGTGACATAATATATTATTCTCATTAGAATATGTTGAATAATG s rn5.chr14 30824511 140 + 115151701 AAATTTGGTCAGTAGCTTGCTTGGATAAAGGAACTGAAA-AACATATTTAGTGATATCAGGTGTTACATTAAATGTTTTCTATTTTACTTCTCTAATATGTGACATAATATAGTATTCTCATTAGAATATATTGGATAACG i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e tarSyr1.scaffold_100794 341 162 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=273.000000 s mm10.chrUn_GL456394 13996 1 + 24323 T s rn5.chr14 30824651 1 + 115151701 T i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_100794 503 1 - 6663 t i tarSyr1.scaffold_100794 I 162 I 77 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=3527.000000 s mm10.chrUn_GL456394 13997 58 + 24323 TTTGGAATTTATACAGAATTATTTTGGATAGATAACTAAAAGttatattaaatatatt s rn5.chr14 30824652 58 + 115151701 TTTGGAAATTATATGGAATTATTTTGGATAGGTAGCATGGAGGTATGCTAAATATATT i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e tarSyr1.scaffold_100794 504 77 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=670.000000 s mm10.chrUn_GL456394 14055 10 + 24323 taatataaat s rn5.chr14 30824710 10 + 115151701 GAAAACAAAA i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_100794 581 10 - 6663 AATTACAAAA i tarSyr1.scaffold_100794 I 77 I 39 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=2979.000000 s mm10.chrUn_GL456394 14065 44 + 24323 CTGTGTGTTTGACAGTAATAGTTAGGTCATAGTGATGGGAACTC s rn5.chr14 30824720 44 + 115151701 CTGTGTGTATGGCAGTAATAGCTGGATCTTAATGATGAGAACTC i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e tarSyr1.scaffold_100794 591 39 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=29.000000 s mm10.chrUn_GL456394 14109 1 + 24323 A s rn5.chr14 30824764 1 + 115151701 G i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_100794 630 1 - 6663 A i tarSyr1.scaffold_100794 I 39 I 47 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e papHam1.Contig716445 825 0 - 1246 I a score=413.000000 s mm10.chrUn_GL456394 14110 18 + 24323 AGTTATCATTTTTTTGTT s rn5.chr14 30824765 17 + 115151701 GCTTATTGTTTTTTC-TT i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2540863 2082 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e tarSyr1.scaffold_100794 631 47 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=273.000000 s mm10.chrUn_GL456394 14128 1 + 24323 T s rn5.chr14 30824782 1 + 115151701 T i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2542945 1 - 3767281 T i myoLuc2.GL429902 I 2082 I 370 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e tarSyr1.scaffold_100794 631 47 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=301.000000 s mm10.chrUn_GL456394 14129 15 + 24323 GTAAGTTATGCTTTT s rn5.chr14 30824783 14 + 115151701 CAAAATTATG-TTTT i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4445 443 - 155134 I e tarSyr1.scaffold_100794 631 47 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=-236.000000 s mm10.chrUn_GL456394 14144 3 + 24323 TGa s rn5.chr14 30824797 3 + 115151701 GGC i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 4888 3 - 155134 TAA i vicPac1.scaffold_2771 I 443 I 7 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 631 47 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=96.000000 s mm10.chrUn_GL456394 14147 7 + 24323 aattata s rn5.chr14 30824800 7 + 115151701 CACTTTA i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4891 7 - 155134 I e tarSyr1.scaffold_100794 631 47 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=29.000000 s mm10.chrUn_GL456394 14154 1 + 24323 a s rn5.chr14 30824807 1 + 115151701 A i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 4898 1 - 155134 G i vicPac1.scaffold_2771 I 7 I 8 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 631 47 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=182.000000 s mm10.chrUn_GL456394 14155 2 + 24323 ta s rn5.chr14 30824808 2 + 115151701 TA i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4899 8 - 155134 I e tarSyr1.scaffold_100794 631 47 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=1365.000000 s mm10.chrUn_GL456394 14157 5 + 24323 ataaa s rn5.chr14 30824810 5 + 115151701 ATAAA i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 4907 5 - 155134 ATAAA i vicPac1.scaffold_2771 I 8 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 631 47 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=546.000000 s mm10.chrUn_GL456394 14162 1 + 24323 a s rn5.chr14 30824815 1 + 115151701 A i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_100794 678 1 - 6663 A i tarSyr1.scaffold_100794 I 47 I 3415 s vicPac1.scaffold_2771 4912 1 - 155134 A i vicPac1.scaffold_2771 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e papHam1.Contig716445 825 0 - 1246 I a score=980.000000 s mm10.chrUn_GL456394 14163 7 + 24323 --atatGTA s rn5.chr14 30824816 7 + 115151701 --ATATGGA i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 4913 9 - 155134 AATTATGTA i vicPac1.scaffold_2771 C 0 I 150 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=4092.000000 s mm10.chrUn_GL456394 14170 127 + 24323 GATAAACAGAAATACCAATATTTTCATTCTACTATTGGGAATCGAGCTATTTATTCACTTTGTAGTTATCCTGTACTTGGCC--GTAGGAGTTGGTCTTACTCACTCAATGTCCTATATATGAAAAGTA s rn5.chr14 30824823 119 + 115151701 GATAAATATAACTGTGCATCTTTGCGTTCTACTGTTTAGCTTCGAGATACTTGTTCACTTTGTAGTTACCGTGTACTTGCCGTAGGAGGAGTTGGTCTTAGTGCAT-------CTACATGTGAAGA--- i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 4922 150 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=100.000000 s mm10.chrUn_GL456394 14297 1 + 24323 G s vicPac1.scaffold_2771 5072 1 - 155134 g i vicPac1.scaffold_2771 I 150 I 15 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e rn5.chr14 30824942 0 + 115151701 C a score=0.000000 s mm10.chrUn_GL456394 14298 2 + 24323 TG e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5073 15 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e rn5.chr14 30824942 0 + 115151701 C a score=1447.000000 s mm10.chrUn_GL456394 14300 12 + 24323 TTAAGAGCATAT s rn5.chr14 30824942 11 + 115151701 -TAAGAGCATAT i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 5088 12 - 155134 CTAAGTAATTAT i vicPac1.scaffold_2771 I 15 I 20 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=627.000000 s mm10.chrUn_GL456394 14312 14 + 24323 AAAGAAAAAGGAAA s rn5.chr14 30824953 14 + 115151701 AGGGAAAAAGCACA i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5100 20 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=311.000000 s mm10.chrUn_GL456394 14326 2 + 24323 AC s rn5.chr14 30824967 2 + 115151701 AT i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 5120 2 - 155134 AC i vicPac1.scaffold_2771 I 20 I 152 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=0.000000 s mm10.chrUn_GL456394 14328 31 + 24323 CTATGGTGGTGCAGTGTAGGGCTTTATTTCT e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5122 152 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e rn5.chr14 30824969 0 + 115151701 C a score=3132.000000 s mm10.chrUn_GL456394 14359 59 + 24323 TAAAGTTGCCCTAATATAAGAGAAAAAGAAAAGAAAATGTAGTCACAGTGACTAATGAA s rn5.chr14 30824969 54 + 115151701 -----TTGCCTTAATATCAGAGAAAAATAAAAGAAAATGTAGTCACAGTGACTAATGCA i rn5.chr14 C 0 C 0 s ornAna1.Ultra516 5158613 44 - 10039024 TGAAGCCGCCC---CATGGGGGAAAGCGGGAAGAAAG---------AGAGAAGGAG--- i ornAna1.Ultra516 N 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5122 152 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=523.000000 s mm10.chrUn_GL456394 14418 19 + 24323 TGAGAAAAATAGA-----------------------GAAGGT s rn5.chr14 30825023 22 + 115151701 TGAGAAAAAAATA--------------------CTGGAAGGT i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 5274 42 - 155134 TTAAAAAAAAAAAGCATGATTCATAAACgaatacaaagaagt i vicPac1.scaffold_2771 I 152 I 19 s ornAna1.Ultra516 5158657 19 - 10039024 GGAAAGAGAGGAA-----------------------GGAGGT i ornAna1.Ultra516 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=600.000000 s mm10.chrUn_GL456394 14437 2 + 24323 GG s rn5.chr14 30825045 2 + 115151701 GG i rn5.chr14 C 0 C 0 s ornAna1.Ultra516 5158676 2 - 10039024 GG i ornAna1.Ultra516 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5316 19 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=-917.000000 s mm10.chrUn_GL456394 14439 4 + 24323 AAGC- s rn5.chr14 30825047 4 + 115151701 AAGC- i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 5335 3 - 155134 aag-- i vicPac1.scaffold_2771 I 19 I 57 s ornAna1.Ultra516 5158678 4 - 10039024 -GGCT i ornAna1.Ultra516 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=29.000000 s mm10.chrUn_GL456394 14443 1 + 24323 A s rn5.chr14 30825051 1 + 115151701 A i rn5.chr14 C 0 C 0 s ornAna1.Ultra516 5158682 1 - 10039024 G i ornAna1.Ultra516 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2542946 370 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5338 57 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=-960.000000 s mm10.chrUn_GL456394 14444 2 + 24323 --GG s rn5.chr14 30825052 2 + 115151701 --GG i rn5.chr14 C 0 C 0 s myoLuc2.GL429902 2543316 2 - 3767281 --gg i myoLuc2.GL429902 I 370 I 2761 s ornAna1.Ultra516 5158683 2 - 10039024 CT-- i ornAna1.Ultra516 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5338 57 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=1603.000000 s mm10.chrUn_GL456394 14446 31 + 24323 ---AGGAAGAGAGAGATGAAATGAGATTTAAGTG s rn5.chr14 30825054 31 + 115151701 ---AGGAAGGGAGACATCAAATGAAATTGAAGGG i rn5.chr14 C 0 C 0 s ornAna1.Ultra516 5158685 31 - 10039024 AACAGAAGCAGAATAATGCCACAAG---CAAGTG i ornAna1.Ultra516 C 0 I 7 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5338 57 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=1224.000000 s mm10.chrUn_GL456394 14477 19 + 24323 CTAGACAGCAACTGGTATC s rn5.chr14 30825085 19 + 115151701 CTACACACCAACTGGTATC i rn5.chr14 C 0 C 0 s ornAna1.Ultra516 5158723 18 - 10039024 CTCACAAGCAAGTGGAAT- i ornAna1.Ultra516 I 7 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5338 57 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=-883.000000 s mm10.chrUn_GL456394 14496 4 + 24323 TACA s rn5.chr14 30825104 4 + 115151701 TAGG i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 5395 4 - 155134 taag i vicPac1.scaffold_2771 I 57 I 79 s ornAna1.Ultra516 5158741 1 - 10039024 -A-- i ornAna1.Ultra516 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=-199.000000 s mm10.chrUn_GL456394 14500 15 + 24323 TTAA---GAAAAGGATGT s rn5.chr14 30825108 15 + 115151701 TTAA---CCAAAGTATTT i rn5.chr14 C 0 I 1362 s ornAna1.Ultra516 5158742 15 - 10039024 ---ATGCCACAAGCAAGT i ornAna1.Ultra516 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5399 79 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=4789.000000 s mm10.chrUn_GL456394 14515 67 + 24323 TGATTTTATTTTGGGAACCATCGGAATATTTTAATCAAATTAAGTAGAATTAAATGATAAACTACTT s rn5.chr14 30826485 66 + 115151701 tcatattattttgagaaccatgggaatCTTTTCATCAAATTAAATGGAATTAAATGATAA-TGATTT i rn5.chr14 I 1362 C 0 s ornAna1.Ultra516 5158757 64 - 10039024 -GGAATAATCTCACAAGCAAGTGGAATAATGCCAC--AAGCAAGTGGAATAAAGTGACAAGCAAGTG i ornAna1.Ultra516 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5399 79 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=471.000000 s mm10.chrUn_GL456394 14582 2 + 24323 GA s rn5.chr14 30826551 2 + 115151701 GA i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 5478 2 - 155134 CA i vicPac1.scaffold_2771 I 79 I 64 s ornAna1.Ultra516 5158821 2 - 10039024 GA i ornAna1.Ultra516 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=3788.000000 s mm10.chrUn_GL456394 14584 50 + 24323 -AAACCTCACTGAACAAAAGGAATAAATTAAGAAAGGATTGTCAGATTGAC s rn5.chr14 30826553 50 + 115151701 -AAATCTCACAGAAGAGAAGAAATGAATGAAGAAAGGACTGTCAGATTGAC i rn5.chr14 C 0 C 0 s ornAna1.Ultra516 5158823 50 - 10039024 ATAATGCCACA-AGCAAGTGGAATAATCTCACAAGCAACTGGAATAATGCC i ornAna1.Ultra516 C 0 I 1108 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5480 64 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I a score=955.000000 s mm10.chrUn_GL456394 14634 10 + 24323 TGGCAAGAGA s rn5.chr14 30826603 10 + 115151701 TGGCAAGAGA i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5480 64 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=67.000000 s mm10.chrUn_GL456394 14644 2 + 24323 GT s rn5.chr14 30826613 2 + 115151701 GT i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 5544 2 - 155134 AC i vicPac1.scaffold_2771 I 64 I 2213 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=16824.000000 s mm10.chrUn_GL456394 14646 369 + 24323 TAGCTGGAGGATACTGATGTCATAGGTGGCTAGATGAAG------------TTTTAAATTACATGATTTAGAACTGCCAGAAGGGGTAAAGAtaaaagatgtgttattacacatatatctactaa-ttttgctaataaatttgcatgtgcaataagtaaaataaataaataaatagcatctccctgaatattctggctaagacttgttcttatgatcattattgaagatatgtaatagcagcattagggaaaaatactggaagtaactattTGAATATATGGTAAAATATGATATATGGTAGAGTGTACACTATTGCAATAAATTGATGCAATATCCATGTATATAAGGatatatatatattattttaattaaaaataaata s rn5.chr14 30826615 362 + 115151701 TATCTGGAGGATATTGATGTCATAGGTTTCTAAATGAAGAGTCAATCAAGTATTAAACTCTTATAATTTAGAACTGCCATAAGGGG-AAAGGTGAAAGATGGGTCATTACATATTTGTCTACTAATTTTTAATGATAACTTTGTATGTGTAAAAAATAA---GAGTAAATAAATCACATCTTCCTGACTATTTTGATTAGAGCTTGTCCTTAGCATCATTATTGAAGACATGCAATAGCAACATTA------------GGAAGTAAATATTTGAAAACCGGGCAAAATATGTGATGAGGCATTGTGAATAATATTTCTATAAATCGATGCTACAGCCATATACATAAG----CACACATAACattttaattaaaaataagta i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 45522 3205 - 56521 I e vicPac1.scaffold_2771 5546 2213 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=937.000000 s mm10.chrUn_GL456394 15015 5 + 24323 atttt s rn5.chr14 30826977 5 + 115151701 attta i rn5.chr14 C 0 C 0 s turTru2.JH487638 48727 5 - 56521 atttt i turTru2.JH487638 I 3205 I 141 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e vicPac1.scaffold_2771 5546 2213 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=4839.000000 s mm10.chrUn_GL456394 15020 108 + 24323 aaaagatttaaaGTCTAGGACTTAATGAATTGCCAGATATATGAG------AAGGTTACACAAGACTTCTACTTTTCTCACTACTAAAAGAGAAAATAG----AGTAATAGATTTAAT s rn5.chr14 30826982 114 + 115151701 atagaatt--aaatCTAAGACTTACTGATTTTCCAGATATATGAGGAAGAAAGGGTTACACATGATTTTAACTTTTCTGACT--TAGAATAGAAAATAGATACAATAATAGATTTAAT i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 48732 141 - 56521 I e vicPac1.scaffold_2771 5546 2213 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=302.000000 s mm10.chrUn_GL456394 15128 2 + 24323 AT s rn5.chr14 30827096 2 + 115151701 AT i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 7759 2 - 155134 AC i vicPac1.scaffold_2771 I 2213 I 10 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 48732 141 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=646.000000 s mm10.chrUn_GL456394 15130 15 + 24323 TTTCATCATATTTTC s rn5.chr14 30827098 15 + 115151701 TTTCCTCATAACGTC i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 48732 141 - 56521 I e vicPac1.scaffold_2771 7761 10 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=333.000000 s mm10.chrUn_GL456394 15145 21 + 24323 -ACAGTTACGGTTCCCTCAAAT s rn5.chr14 30827113 21 + 115151701 -AAAGTTATACTACCCTCTAAT i rn5.chr14 C 0 T 609 s vicPac1.scaffold_2771 7771 19 - 155134 CCACGTTATAGTTATCTTT--- i vicPac1.scaffold_2771 I 10 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 48732 141 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=1130.000000 s mm10.chrUn_GL456394 15166 5 + 24323 TAAGT s rn5.chr14 30826525 5 + 115151701 TAAAT i rn5.chr14 T 609 C 0 s vicPac1.scaffold_2771 7790 5 - 155134 TAAGT i vicPac1.scaffold_2771 C 0 I 11 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 48732 141 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=251.000000 s mm10.chrUn_GL456394 15171 4 + 24323 AGAA s rn5.chr14 30826530 4 + 115151701 GGAA i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 48732 141 - 56521 I e vicPac1.scaffold_2771 7795 11 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=273.000000 s mm10.chrUn_GL456394 15175 1 + 24323 T s rn5.chr14 30826534 1 + 115151701 T i rn5.chr14 C 0 C 0 s turTru2.JH487638 48873 1 - 56521 T i turTru2.JH487638 I 141 I 72 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e vicPac1.scaffold_2771 7795 11 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=828.000000 s mm10.chrUn_GL456394 15176 9 + 24323 TAAATGATA s rn5.chr14 30826535 9 + 115151701 TAAATGATA i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 48874 72 - 56521 I e vicPac1.scaffold_2771 7795 11 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=860.000000 s mm10.chrUn_GL456394 15185 8 + 24323 -ACTATTTG s rn5.chr14 30826544 8 + 115151701 -ATGATTTG i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 7806 9 - 155134 TGTAATTTA i vicPac1.scaffold_2771 I 11 I 20 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 48874 72 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=1721.000000 s mm10.chrUn_GL456394 15193 32 + 24323 AAAACCTCACTGAACAAAAGGAACAAATTAAG s rn5.chr14 30826552 32 + 115151701 AAAATCTCACAGAAGAGAAGAAATGAATGAAG i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 48874 72 - 56521 I e vicPac1.scaffold_2771 7815 20 - 155134 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=1760.000000 s mm10.chrUn_GL456394 15225 46 + 24323 AAAGGATTGTCAGATTGACTGACAAGAGAGTTAGCTGGAGGATACT s rn5.chr14 30826584 46 + 115151701 AAAGGACTGTCAGATTGACTGGCAAGAGAGTTATCTGGAGGATATT i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 7835 33 - 155134 GTATAATTGACAT-CTAATTCATAATTGTGTTTG------------ i vicPac1.scaffold_2771 I 20 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e myoLuc2.GL429902 2543318 2761 - 3767281 I e turTru2.JH487638 48874 72 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=1641.000000 s mm10.chrUn_GL456394 15271 9 + 24323 GATGTGATA s rn5.chr14 30826630 9 + 115151701 GATGTCATA i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 7868 4 - 155134 -----AATA i vicPac1.scaffold_2771 C 0 C 0 s myoLuc2.GL429902 2546079 9 - 3767281 GATGTAATT i myoLuc2.GL429902 I 2761 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e turTru2.JH487638 48874 72 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=1001.000000 s mm10.chrUn_GL456394 15280 3 + 24323 GGT s rn5.chr14 30826639 3 + 115151701 GGT i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 7872 3 - 155134 AGT i vicPac1.scaffold_2771 C 0 I 1 s turTru2.JH487638 48946 3 - 56521 AGT i turTru2.JH487638 I 72 I 719 s myoLuc2.GL429902 2546088 2 - 3767281 -GA i myoLuc2.GL429902 C 0 I 2 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=-2090.000000 s mm10.chrUn_GL456394 15283 10 + 24323 GGCTAGATGA- s rn5.chr14 30826642 10 + 115151701 TTCTAAATGA- i rn5.chr14 C 0 C 0 s vicPac1.scaffold_2771 7876 10 - 155134 -TGTTTTCCAA i vicPac1.scaffold_2771 I 1 C 0 s myoLuc2.GL429902 2546092 10 - 3767281 -TCTAACTCAT i myoLuc2.GL429902 I 2 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 679 3415 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=1386.000000 s mm10.chrUn_GL456394 15293 2 + 24323 AG s rn5.chr14 30826652 2 + 115151701 AG i rn5.chr14 C 0 I 486 s tarSyr1.scaffold_100794 4094 2 - 6663 AG i tarSyr1.scaffold_100794 I 3415 I 116 s vicPac1.scaffold_2771 7886 2 - 155134 AG i vicPac1.scaffold_2771 C 0 C 0 s myoLuc2.GL429902 2546102 2 - 3767281 AA i myoLuc2.GL429902 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e turTru2.JH487638 48949 719 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=441.000000 s mm10.chrUn_GL456394 15295 7 + 24323 TTTTAAA s vicPac1.scaffold_2771 7888 7 - 155134 TTTTAAA i vicPac1.scaffold_2771 C 0 N 0 s myoLuc2.GL429902 2546104 6 - 3767281 TTTTAT- i myoLuc2.GL429902 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 4096 116 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e rn5.chr14 30826654 486 + 115151701 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=62.000000 s mm10.chrUn_GL456394 15302 19 + 24323 TTACAT---TATTTATAACTGC s myoLuc2.GL429902 2546110 22 - 3767281 TTGAATAAATGTGCATAAATTC i myoLuc2.GL429902 C 0 N 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 4096 116 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e rn5.chr14 30826654 486 + 115151701 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=0.000000 s mm10.chrUn_GL456394 15321 2 + 24323 AA e dipOrd1.scaffold_38642 2648 5871 - 11972 I e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 4096 116 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e rn5.chr14 30826654 486 + 115151701 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=3536.000000 s mm10.chrUn_GL456394 15323 66 + 24323 ATTGCAGCAGCAATTTTTAAATAACAGCATCCTACATGTTTGTTCAAATGTCATTCATTTTCAGAA s rn5.chr14 30827140 62 + 115151701 ATTGCAGCAGCAGTTTCAAAATAACAAAATTCTGAATATT----CAAATATCATTCATTTTGAGAA i rn5.chr14 I 486 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 4096 116 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=-669.000000 s mm10.chrUn_GL456394 15389 2 + 24323 -AG-- s rn5.chr14 30827202 2 + 115151701 -AA-- i rn5.chr14 C 0 C 0 s dasNov3.JH567186 690000 5 - 8154233 GAGTG i dasNov3.JH567186 N 0 I 9 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 4096 116 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=464.000000 s mm10.chrUn_GL456394 15391 5 + 24323 AACAA s rn5.chr14 30827204 5 + 115151701 AACAA i rn5.chr14 C 0 C 0 e dipOrd1.scaffold_38642 2648 5871 - 11972 I e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 4096 116 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e dasNov3.JH567186 690005 9 - 8154233 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=664.000000 s mm10.chrUn_GL456394 15396 4 + 24323 AAAT s rn5.chr14 30827209 4 + 115151701 AAAA i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 8519 4 - 11972 AAAA i dipOrd1.scaffold_38642 I 5871 C 0 e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 4096 116 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e dasNov3.JH567186 690005 9 - 8154233 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=1146.000000 s mm10.chrUn_GL456394 15400 2 + 24323 GT s rn5.chr14 30827213 2 + 115151701 GT i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 8523 2 - 11972 GT i dipOrd1.scaffold_38642 C 0 C 0 s dasNov3.JH567186 690014 2 - 8154233 GT i dasNov3.JH567186 I 9 C 0 e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 4096 116 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=205.000000 s mm10.chrUn_GL456394 15402 1 + 24323 T s rn5.chr14 30827215 1 + 115151701 T i rn5.chr14 C 0 C 0 s dipOrd1.scaffold_38642 8525 1 - 11972 C i dipOrd1.scaffold_38642 C 0 N 0 s micMur1.scaffold_36648 2831 1 - 8396 C i micMur1.scaffold_36648 N 0 N 0 s dasNov3.JH567186 690016 1 - 8154233 C i dasNov3.JH567186 C 0 C 0 e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 4096 116 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=273.000000 s mm10.chrUn_GL456394 15403 1 + 24323 A s rn5.chr14 30827216 1 + 115151701 A i rn5.chr14 C 0 C 0 s dasNov3.JH567186 690017 1 - 8154233 A i dasNov3.JH567186 C 0 N 0 e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 4096 116 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=671.000000 s mm10.chrUn_GL456394 15404 13 + 24323 GTATATTTTTTCT s rn5.chr14 30827217 12 + 115151701 GTATATTTTTT-T i rn5.chr14 C 0 C 0 e turTru2.JH487638 48949 719 - 56521 I e tarSyr1.scaffold_100794 4096 116 - 6663 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=145.000000 s mm10.chrUn_GL456394 15417 2 + 24323 CT s rn5.chr14 30827229 2 + 115151701 CT i rn5.chr14 C 0 C 0 s tarSyr1.scaffold_100794 4212 2 - 6663 AT i tarSyr1.scaffold_100794 I 116 N 0 e turTru2.JH487638 48949 719 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=881.000000 s mm10.chrUn_GL456394 15419 29 + 24323 TTCTTTTCCTTGAATTTAAATTTGGTAGC s rn5.chr14 30827231 28 + 115151701 CTTTATTCCT-GAGTTTAAACTCTGTAAT i rn5.chr14 C 0 C 0 e turTru2.JH487638 48949 719 - 56521 I e papHam1.Contig716445 825 0 - 1246 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=29.000000 s mm10.chrUn_GL456394 15448 1 + 24323 A s rn5.chr14 30827259 1 + 115151701 G i rn5.chr14 C 0 C 0 s papHam1.scaffold18774 12325 1 - 46848 A i papHam1.scaffold18774 I 10311 N 0 e turTru2.JH487638 48949 719 - 56521 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=13366.000000 s mm10.chrUn_GL456394 15449 181 + 24323 TGGAGACACTTTTTGCTTGAATGAATGAATTGTATAAAAGGACCAAGTTTCCAAATTCATAAAGCTTTCCTGAGTTTTAAAAAAATGCCCTAAATCAATGTAAAGAAATCAAGACAACTGAACTATAAAAATGAATGTGTGTAGCCTTGACTTGATTTTATTTGTGTAGTGTAGTGCATTG s rn5.chr14 30827260 180 + 115151701 TGGGGATGTTTTTGGCTTGAATGACTGAGTTGTATAAAAGGACCAAGTATCCAAAATCATAAAGCTTTCATGAGTTTTTTTAAA-TGCCCTAAATCAATGTAAAGCAATCAAGACAACTGAACTATAAAAATGAATGTCTGTAGCCTTGACTTGATTTTATTTGGGTAGTATAGTGCATTG i rn5.chr14 C 0 C 0 e turTru2.JH487638 48949 719 - 56521 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=27739.000000 s mm10.chrUn_GL456394 15630 203 + 24323 ATTGACATTTGAAAAATATTGTGTTCAATACTTAATCCCCTGAAGAAAATAAGGAATAGCCACAAATCCAATAATCCCCATCTGCACATAAGTGAACTATCATCCTAAATTTACCCTTGCAACTTTCCATTTTGACC-TAGATTGGTTTGACTATGGAAGACGGTT--TCATTTCAACACAGTAAAATGTGAA-TTTTAATATCAAT s rn5.chr14 30827440 203 + 115151701 ATTGACATTTGAAAAATGTTGTGTTCAATACTTAACCTCCTGA-GAGAATAAGGAATAGCCACAAATCCAATAATCCCCATCTGCACATAAGTGAACTATCATCCTGAATTTACGCTTGCAAGTTTCCATTTTGATC-TAGATTGGTTTAACTATGGAAGACAATT--TCATTACAATACAGTGAAATGTGAATTTTTAACTTCAAT i rn5.chr14 C 0 C 0 s choHof1.scaffold_101629 2060 203 - 6994 ACTGATATTTGAGACACACTGCATTTAATAATTATCCTCCTGA-AATGATAAGAAATAACCATAAATTCCATAACACCTATCTGTACCTAACTGGACTATTGCATTAAATTTAC-CTCACATGTTTATTTTTTAATCTTAAGTTGAATTGATTATGGGAGGGGTGCTG-CATTTTGACAAAGTACAATTTTAT-CTTTGACATTATC i choHof1.scaffold_101629 N 0 C 0 e turTru2.JH487638 48949 719 - 56521 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=5247.000000 s mm10.chrUn_GL456394 15833 138 + 24323 TCATTGTAATTTGCTGTCTTTAGAATTTGCCAATAATAAGGCAAATATTT-GGCAAAATTTGT----AATTTCAT-AACCAGTTTTAAAGCATACCAACCAAATGGGTCTATTCCAGTTCTC----------ACCTCATATCTCGGTTGTCAAA s rn5.chr14 30827643 135 + 115151701 TCATCTTAATTTGCTATCTTTAGAATTTGTCAACAATAAGGCAAATATTTAGGGAAAATTTGC----AATTTCAC-AACAAGTTTTAAGGCAT----ACCAAAAGCGTCTACTCCTGTTCTT----------ACCTCACATTTCAATTGTGaaa i rn5.chr14 C 0 N 0 s choHof1.scaffold_101629 2263 136 - 6994 TCATTTTCAGTTGTTAAC---AGAATTGCCAAACATGCAAGTATGTACTTAGAGATAATTAAA----AATTTCAT-AATCAGATT------AT----AGCTTGTGGGTACACTGAAATTATTCTACACTGGGACCTGATCTCTCTGTTATTGGA i choHof1.scaffold_101629 C 0 C 0 s oryLat2.chr24 3334835 119 - 24165179 tctttatttcttgttctcTCGAGGACTGTC-----TTTGGTCGTGTTTTT-GGCTAAATTTGTCTTGAATGTCACAAACCAGTTCTGACACAG----ATTGTATAAAC------------------------ACATCAGACCTTGAGATTTGA- i oryLat2.chr24 N 0 C 0 e turTru2.JH487638 48949 719 - 56521 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=-18.000000 s mm10.chrUn_GL456394 15971 25 + 24323 Gccactc---ctggacgtaaacccagaa s choHof1.scaffold_101629 2399 28 - 6994 GCCCCTCTGTTTGGACCTGAGTAGAGGG i choHof1.scaffold_101629 C 0 C 0 s oryLat2.chr24 3334954 17 - 24165179 -----------TGGAAGTAAACTCATCA i oryLat2.chr24 C 0 C 0 e turTru2.JH487638 48949 719 - 56521 I e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=531.000000 s mm10.chrUn_GL456394 15996 2 + 24323 ga s turTru2.JH487638 49668 2 - 56521 GA i turTru2.JH487638 I 719 C 0 s choHof1.scaffold_101629 2427 2 - 6994 GA i choHof1.scaffold_101629 C 0 N 0 s oryLat2.chr24 3334971 2 - 24165179 GC i oryLat2.chr24 C 0 C 0 e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=-183.000000 s mm10.chrUn_GL456394 15998 4 + 24323 tgat s turTru2.JH487638 49670 4 - 56521 GAAT i turTru2.JH487638 C 0 N 0 s oryLat2.chr24 3334973 4 - 24165179 CAGC i oryLat2.chr24 C 0 C 0 e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=-1701.000000 s mm10.chrUn_GL456394 16002 294 + 24323 ccgacatgtaataaggacacattctccattgtgtccatagcagctttatttataagaaccaggagctggaa---------aaaacccagatgtccttc----aacagaggaatgaata-cagaaaatatggtatatttatacaatggtatattattcacccattaagaacaatgaattcatgaaattctta----ggcaagttgatagaactagaaaaaatattattctgagtgagataacccaattgcaaa---------agaacacacatggtatgcactcactgataaatggattctagccccaaattctccaaataa s oryLat2.chr24 3334977 302 - 24165179 CAGA-----------AACTGGCTCtgaatttt-ttggttttattttcatttttagtagaaaagagaagaaagcactttctaaaaatgaaatattattttgttcacAATGGCACTAACATCAAATTAAATTTTATGGTGAAGCAACACATTATTTCTCAG--ATTCAGTACAGTTACACTATAGATTTTTTAACACGTAAGGTTCAGAAATCCATCAAATACTCaactcagagaaaaacagtTC--TTAAAAATCATCTTCTAGTTCACAGAACACATATGCTAACTTTTTTCTAGACTCAA---CCAAATCTGACTGTTAA i oryLat2.chr24 C 0 C 0 e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=-8016.000000 s mm10.chrUn_GL456394 16296 177 + 24323 ccaggattcaatt---cagagaccacatgaagctcaatagaaagaaggccaaagtgtcagtgcttcaggtctt-cttagaaggagaagaaaatgctcacaggagcaaatatggagataaagtgtaaagcagagactaaaggaaagaaaaagcatagactgtcccacctgcggattaatccc s galGal4.chr25 1703963 134 - 2191139 CCAGGCTGCAGGTGGGCAAGGAGGACATGGAGGCCACCAGCACAGAGGC------------ACTGCACGTCTC--------GGAGAAAAAGGAGC----AGAGGGAAATCTGGAGCCC----------------CTCCAGGGAGGATGAGGAATGTGAGTTCCCAGATGAGGAG------- i galGal4.chr25 N 0 C 0 s oryLat2.chr24 3335279 137 - 24165179 ----ACTAGACGT---TTGaaaccat-taaaacaaaacaaaacaaaaagtagggTGATTATAcatcatttatttctttgaaagaCTTGTAAATAT-------------TACATATATTACCTTTATTTTAAAGGccatgttgaagaaaaaaaa----atttc------------------- i oryLat2.chr24 C 0 C 0 e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=-556.000000 s mm10.chrUn_GL456394 16473 2 + 24323 tt- s xenTro3.GL173180 536929 2 - 774663 TT- i xenTro3.GL173180 N 0 C 0 s oryLat2.chr24 3335416 2 - 24165179 -tg i oryLat2.chr24 C 0 C 0 e galGal4.chr25 1704097 0 - 2191139 C e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=-27543.000000 s mm10.chrUn_GL456394 16475 76 + 24323 ataaaattacaaaaaccagatactg-----ttgtgggtgccaagaagtg-------catgcagaa------ag-gagcctgatttggctacctc-a s galGal4.chr25 1704097 61 - 2191139 AGGGAAATGCAAGAAGAAG----------------GGTCCC------TG-------CAGATGGAA------ATCGAAGCTGCTTGTGCTGTCCCTG i galGal4.chr25 C 0 C 0 s xenTro3.GL173180 536931 76 - 774663 GCAATATCATATTAAAGTGGTACTGACATTTTTTAAAAGCAATTTAGTA-------TACACGGAG---------GAGTCCGCT---ACTTACTA-A i xenTro3.GL173180 C 0 C 0 s gasAcu1.chrIX 215503 87 - 20249479 ACACAGTGACTACAAAGAGACACA------CGGTGACCACAAAGAGACACACGGTGACCACAAAGAGACACACGGTGACTACAAAGGTACTCA--- i gasAcu1.chrIX N 0 C 0 s oryLat2.chr24 3335418 45 - 24165179 -----------------aga------------------acaaaagaaaa-------acttcaaag------ACGAAAACTCagataattttca--- i oryLat2.chr24 C 0 I 6 e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=-7335.000000 s mm10.chrUn_GL456394 16551 22 + 24323 tgagaggccctgtaagagcttt s galGal4.chr25 1704158 19 - 2191139 TGGGGAGCCACCCA---GTTTT i galGal4.chr25 C 0 C 0 s xenTro3.GL173180 537007 17 - 774663 TAAAGAA-----TAGAAGCTCT i xenTro3.GL173180 C 0 C 0 s fr3.HE591961 83912 22 + 93265 ttaaaggtaGGATAAAAGTTCT i fr3.HE591961 N 0 C 0 s gasAcu1.chrIX 215590 20 - 20249479 CGAGTGACTTCATAAGAGT--C i gasAcu1.chrIX C 0 C 0 s oryLat2.chr24 3335469 10 - 24165179 ---------tcatttatgt--- i oryLat2.chr24 I 6 C 0 e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=-15536.000000 s mm10.chrUn_GL456394 16573 18 + 24323 ------acaaatacagaggcaaat s galGal4.chr25 1704177 18 - 2191139 ------GCCAACAGGAATCCACTT i galGal4.chr25 C 0 C 0 s xenTro3.GL173180 537024 17 - 774663 ------TTATATTCAGTGATTGT- i xenTro3.GL173180 C 0 C 0 s latCha1.AFYH01275859 447 14 - 7455 ----------acaaaaaaataaac i latCha1.AFYH01275859 N 0 I 4 s fr3.HE591961 83934 18 + 93265 CCAAAGACAAGCAAAAAT------ i fr3.HE591961 C 0 C 0 s gasAcu1.chrIX 215610 18 - 20249479 TCACGGGTACCTCAAAAG------ i gasAcu1.chrIX C 0 C 0 s oryLat2.chr24 3335479 15 - 24165179 ---aTTGTATCcataaaa------ i oryLat2.chr24 C 0 C 0 e ornAna1.Ultra516 5158873 1108 - 10039024 I a score=-7451.000000 s mm10.chrUn_GL456394 16591 4 + 24323 -gtta s ornAna1.Ultra516 5159981 4 - 10039024 -GTCT i ornAna1.Ultra516 I 1108 C 0 s galGal4.chr25 1704195 4 - 2191139 -GCAA i galGal4.chr25 C 0 C 0 s xenTro3.GL173180 537041 4 - 774663 -GTTT i xenTro3.GL173180 C 0 C 0 s latCha1.AFYH01275859 465 4 - 7455 -gcgg i latCha1.AFYH01275859 I 4 C 0 s fr3.HE591961 83952 4 + 93265 GGAA- i fr3.HE591961 C 0 C 0 s gasAcu1.chrIX 215628 4 - 20249479 AGTC- i gasAcu1.chrIX C 0 T 232 s oryLat2.chr24 3335494 3 - 24165179 tgt-- i oryLat2.chr24 C 0 C 0 a score=260.000000 s mm10.chrUn_GL456394 16595 6 + 24323 gcagcc s ornAna1.Ultra516 5159985 6 - 10039024 GAAGCC i ornAna1.Ultra516 C 0 C 0 s galGal4.chr25 1704199 6 - 2191139 GAGGAC i galGal4.chr25 C 0 C 0 s xenTro3.GL173180 537045 6 - 774663 GCAGCT i xenTro3.GL173180 C 0 C 0 s latCha1.AFYH01275859 469 6 - 7455 gcaaaa i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 83956 6 + 93265 ACATCC i fr3.HE591961 C 0 C 0 s oryLat2.chr24 3335497 6 - 24165179 ataatt i oryLat2.chr24 C 0 C 0 e gasAcu1.chrIX 215632 232 - 20249479 T a score=-15787.000000 s mm10.chrUn_GL456394 16601 40 + 24323 aaccattggattgaaaacagggtcccaaata-aaggaatta- s ornAna1.Ultra516 5159991 28 - 10039024 GCCCCATGGGG-GAAAGCGGG------------AAGAAAGA- i ornAna1.Ultra516 C 0 C 0 s galGal4.chr25 1704205 39 - 2191139 TTCC-TTGAGA-GAGAGCAGGAGTCTGAGCACcaggagatg- i galGal4.chr25 C 0 I 9 s xenTro3.GL173180 537051 35 - 774663 GTTCCATC----CTGCCCCGGGCCCCAACCA--AAGCACTT- i xenTro3.GL173180 C 0 N 0 s latCha1.AFYH01275859 475 39 - 7455 aaaaattaaa--gagggcaggcacgaaaaaacaaaaaaata- i latCha1.AFYH01275859 C 0 C 0 s oryLat2.chr24 3335503 39 - 24165179 taataTTAGAT-TGAAaccatttccaaaata--aaataatac i oryLat2.chr24 C 0 C 0 e fr3.HE591961 83962 0 + 93265 C e gasAcu1.chrIX 215632 232 - 20249479 T a score=-17296.000000 s mm10.chrUn_GL456394 16641 71 + 24323 gagaaggg---------actggaagagttgaaggggtttgcagccccataagaagaacaagaata-----------------------------tgaattaaccagacc s ornAna1.Ultra516 5160019 55 - 10039024 GAGAAGG----------AGGGAAAGAGAGGAAGGAGGTGGGGCTGCTAACAGAAGCAGAATAATG-------------------------------------------- i ornAna1.Ultra516 C 0 C 0 s galGal4.chr25 1704253 58 - 2191139 gagctgggtgctgcagcaggggaggagagggagcagGAGGTG----TGTCAGGAGCTGAAGG----------------------------------------------- i galGal4.chr25 I 9 C 0 s latCha1.AFYH01275859 514 67 - 7455 aacaagggca-------ggcccaaaaaataaaagagggcgtg----tacgaaaaacaaaaaaataattg-------------------------agggtgggc------ i latCha1.AFYH01275859 C 0 C 0 s oryLat2.chr24 3335542 99 - 24165179 -aaaatgttAC------GGGCCATAAGTACAAATGTTGCGAGG---CCAGACATGCAGAATACGAGCTGGTTctgaatgtttttacatttttatggcaTTGGCCAGTAG i oryLat2.chr24 C 0 C 0 e fr3.HE591961 83962 0 + 93265 C e gasAcu1.chrIX 215632 232 - 20249479 T a score=-11963.000000 s mm10.chrUn_GL456394 16712 24 + 24323 ccccaaaactcccagggactaagc---- s ornAna1.Ultra516 5160074 14 - 10039024 CCACAAG----CAAGTGG---------- i ornAna1.Ultra516 C 0 C 0 s galGal4.chr25 1704311 16 - 2191139 CTTCTAGCATTGAAGA------------ i galGal4.chr25 C 0 N 0 s xenTro3.GL173416 397762 21 + 427269 CTCCATAAGTTCAGGGGCCCA------- i xenTro3.GL173416 N 0 C 0 s latCha1.AFYH01275859 581 20 - 7455 -aaaaaaaatcaatgagggca------- i latCha1.AFYH01275859 C 0 I 7 s oryLat2.chr24 3335641 24 - 24165179 -ATCAAAAAGTAGTAAAAGTA---AATC i oryLat2.chr24 C 0 C 0 e fr3.HE591961 83962 0 + 93265 C e gasAcu1.chrIX 215632 232 - 20249479 T a score=-1432.000000 s mm10.chrUn_GL456394 16736 3 + 24323 ----------aat s ornAna1.Ultra516 5160088 3 - 10039024 ----------AAT i ornAna1.Ultra516 C 0 C 0 s latCha1.AFYH01275859 608 1 - 7455 ----------a-- i latCha1.AFYH01275859 I 7 I 1 s oryLat2.chr24 3335665 13 - 24165179 ACACTTTAGTAAC i oryLat2.chr24 C 0 C 0 e fr3.HE591961 83962 0 + 93265 C e gasAcu1.chrIX 215632 232 - 20249479 T e xenTro3.GL173416 397783 0 + 427269 C a score=-265.000000 s mm10.chrUn_GL456394 16739 1 + 24323 c s ornAna1.Ultra516 5160091 1 - 10039024 A i ornAna1.Ultra516 C 0 C 0 s oryLat2.chr24 3335678 1 - 24165179 A i oryLat2.chr24 C 0 I 7 s petMar1.Contig205 26112 1 + 83855 c i petMar1.Contig205 N 0 C 0 e latCha1.AFYH01275859 609 1 - 7455 I e fr3.HE591961 83962 0 + 93265 C e gasAcu1.chrIX 215632 232 - 20249479 T e xenTro3.GL173416 397783 0 + 427269 C a score=2191.000000 s mm10.chrUn_GL456394 16740 9 + 24323 aacctagaa s ornAna1.Ultra516 5160092 9 - 10039024 ATCTCACAA i ornAna1.Ultra516 C 0 C 0 s taeGut1.chr18 1462525 9 - 11201131 AACATGGCA i taeGut1.chr18 N 0 C 0 s latCha1.AFYH01275859 610 9 - 7455 aacaaaaaa i latCha1.AFYH01275859 I 1 C 0 s oryLat2.chr24 3335686 8 - 24165179 -acacagta i oryLat2.chr24 I 7 I 6 s petMar1.Contig205 26113 9 + 83855 agcccaGCA i petMar1.Contig205 C 0 C 0 e fr3.HE591961 83962 0 + 93265 C e gasAcu1.chrIX 215632 232 - 20249479 T e xenTro3.GL173416 397783 0 + 427269 C a score=-9584.000000 s mm10.chrUn_GL456394 16749 8 + 24323 gtataGTT---- s ornAna1.Ultra516 5160101 7 - 10039024 GCA-AGTG---- i ornAna1.Ultra516 C 0 T 1392 s taeGut1.chr18 1462534 8 - 11201131 GCACAAAG---- i taeGut1.chr18 C 0 C 0 s latCha1.AFYH01275859 619 4 - 7455 aaat-------- i latCha1.AFYH01275859 C 0 C 0 s oryLat2.chr24 3335700 3 - 24165179 gta--------- i oryLat2.chr24 I 6 C 0 s gadMor1.HE569347 2064940 3 + 2123952 gta--------- i gadMor1.HE569347 N 0 C 0 s petMar1.Contig205 26122 8 + 83855 ----GGCCACCT i petMar1.Contig205 C 0 C 0 e fr3.HE591961 83962 0 + 93265 C e gasAcu1.chrIX 215632 232 - 20249479 T e xenTro3.GL173416 397783 0 + 427269 C a score=4011.000000 s mm10.chrUn_GL456394 16757 2 + 24323 GA s ornAna1.Ultra516 5158716 2 - 10039024 GA i ornAna1.Ultra516 T 1392 C 0 s taeGut1.chr18 1462542 2 - 11201131 GA i taeGut1.chr18 C 0 C 0 s latCha1.AFYH01275859 623 2 - 7455 ga i latCha1.AFYH01275859 C 0 I 2 s oryLat2.chr24 3335703 2 - 24165179 ga i oryLat2.chr24 C 0 C 0 s gadMor1.HE569347 2064943 2 + 2123952 ga i gadMor1.HE569347 C 0 C 0 s petMar1.Contig205 26130 2 + 83855 GA i petMar1.Contig205 C 0 C 0 e fr3.HE591961 83962 0 + 93265 C e gasAcu1.chrIX 215632 232 - 20249479 T e xenTro3.GL173416 397783 0 + 427269 C a score=-5073.000000 s mm10.chrUn_GL456394 16759 2 + 24323 GT s ornAna1.Ultra516 5158718 2 - 10039024 AT i ornAna1.Ultra516 C 0 C 0 s taeGut1.chr18 1462544 2 - 11201131 GC i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 890947 2 + 2272089 GC i chrPic1.JH584847 N 0 C 0 s latCha1.AFYH01275859 627 1 - 7455 g- i latCha1.AFYH01275859 I 2 C 0 s oryLat2.chr24 3335705 1 - 24165179 -c i oryLat2.chr24 C 0 I 3 s gadMor1.HE569347 2064945 1 + 2123952 -g i gadMor1.HE569347 C 0 I 1 s petMar1.Contig205 26132 1 + 83855 G- i petMar1.Contig205 C 0 C 0 e fr3.HE591961 83962 0 + 93265 C e gasAcu1.chrIX 215632 232 - 20249479 T e xenTro3.GL173416 397783 0 + 427269 C a score=1911.000000 s mm10.chrUn_GL456394 16761 1 + 24323 A s ornAna1.Ultra516 5158720 1 - 10039024 A i ornAna1.Ultra516 C 0 C 0 s taeGut1.chr18 1462546 1 - 11201131 A i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 890949 1 + 2272089 A i chrPic1.JH584847 C 0 C 0 s gasAcu1.chrIX 215400 1 - 20249479 A i gasAcu1.chrIX T 232 C 0 s oryLat2.chr24 3335709 1 - 24165179 a i oryLat2.chr24 I 3 C 0 s gadMor1.HE569347 2064947 1 + 2123952 a i gadMor1.HE569347 I 1 C 0 e petMar1.Contig205 26133 0 + 83855 C e latCha1.AFYH01275859 628 0 - 7455 C e fr3.HE591961 83962 0 + 93265 C e xenTro3.GL173416 397783 0 + 427269 C a score=-388.000000 s mm10.chrUn_GL456394 16762 1 + 24323 C s ornAna1.Ultra516 5158721 1 - 10039024 A i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498410 1 + 38656188 C i melGal1.chr8 N 0 I 11 s taeGut1.chr18 1462547 1 - 11201131 C i taeGut1.chr18 C 0 I 2 s chrPic1.JH584847 890950 1 + 2272089 T i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 628 1 - 7455 c i latCha1.AFYH01275859 C 0 C 0 s gasAcu1.chrIX 215401 1 - 20249479 C i gasAcu1.chrIX C 0 C 0 s oryLat2.chr24 3335710 1 - 24165179 c i oryLat2.chr24 C 0 C 0 s gadMor1.HE569347 2064948 1 + 2123952 g i gadMor1.HE569347 C 0 C 0 e petMar1.Contig205 26133 0 + 83855 C e fr3.HE591961 83962 0 + 93265 C e xenTro3.GL173416 397783 0 + 427269 C a score=-4096.000000 s mm10.chrUn_GL456394 16763 7 + 24323 TGTGACA s ornAna1.Ultra516 5158722 7 - 10039024 TCTCACA i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498422 4 + 38656188 ---AGCT i melGal1.chr8 I 11 I 2 s galGal4.chr2 96298085 4 + 148809762 ---AATT i galGal4.chr2 N 0 I 2 s taeGut1.chr18 1462550 4 - 11201131 ---GGTG i taeGut1.chr18 I 2 I 2 s chrPic1.JH584847 890951 7 + 2272089 TGTAACA i chrPic1.JH584847 C 0 I 2 s latCha1.AFYH01275859 629 5 - 7455 --gggca i latCha1.AFYH01275859 C 0 I 2 s gasAcu1.chrIX 215402 4 - 20249479 ---GGTG i gasAcu1.chrIX C 0 I 3 s oryLat2.chr24 3335711 4 - 24165179 ---tgta i oryLat2.chr24 C 0 I 3 s gadMor1.HE569347 2064949 4 + 2123952 ---ggtg i gadMor1.HE569347 C 0 C 0 e petMar1.Contig205 26133 0 + 83855 C e fr3.HE591961 83962 0 + 93265 C e xenTro3.GL173416 397783 0 + 427269 C a score=-62703.000000 s mm10.chrUn_GL456394 16770 30 + 24323 AAAAA---------GTGGAACA--ATAT----------GATGTCATAGTGG s sarHar1.chrX_GL868377_random 3111 29 - 7574 AAAAG---------GTGGGGCA--A-AG----------AGCAGCACAGTAG i sarHar1.chrX_GL868377_random N 0 C 0 s ornAna1.Ultra516 5158729 30 - 10039024 AGCAA---------GTGGAATA--ATGC----------CACAAGCAAGTGG i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498428 20 + 38656188 AAA---------------------TTGT----------GACGTCGCAACGG i melGal1.chr8 I 2 C 0 s galGal4.chr2 96298091 29 + 148809762 AAAA------------ACGGTGTTCTGT----------GACATCACAGTAA i galGal4.chr2 I 2 C 0 s taeGut1.chr18 1462556 27 - 11201131 ACAA------------AGGGGC--ACAT----------GGTGGCACAAAGG i taeGut1.chr18 I 2 C 0 s chrPic1.JH584847 890960 28 + 2272089 ACGA-----------TGCAGCA--CTAT----------GACATCACAACAC i chrPic1.JH584847 I 2 C 0 s xenTro3.GL173416 397783 15 + 427269 --------------------------AT----------GATATTACCGTGG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 636 39 - 7455 aaaaataaacgagggtgggcaa--aaaa----------aataaacaagggc i latCha1.AFYH01275859 I 2 C 0 s gasAcu1.chrIX 215409 30 - 20249479 ---------ACAAAGAGACACA--CGGT----------GACCACAAAGAGA i gasAcu1.chrIX I 3 C 0 s oryLat2.chr24 3335718 40 - 24165179 ---------acagtagaccaca--ctgtagtaacagtagatcacacagGTA i oryLat2.chr24 I 3 I 9 s gadMor1.HE569347 2064953 37 + 2123952 ------------aggaagagta--gggtgaagaagaTTGACAGCAGGGTGA i gadMor1.HE569347 C 0 C 0 e petMar1.Contig205 26133 0 + 83855 C e fr3.HE591961 83962 0 + 93265 C a score=-40717.000000 s mm10.chrUn_GL456394 16800 14 + 24323 AGCAAT-------GTGACAGA s sarHar1.chrX_GL868377_random 3140 14 - 7574 AGTGTC-------ATTACATA i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158759 14 - 10039024 AATAAT-------CTCACAAG i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498448 14 + 38656188 GGCGCA-------GTGACGGC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96298120 14 + 148809762 TGCTCT-------GTGAAATC i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462583 13 - 11201131 AGCACA--------TGGTggc i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 890988 21 + 2272089 AGCTAATCACAATGTGATATC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 397798 14 + 427269 GGCCCA-------ATGATATT i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 675 14 - 7455 ggataa-------aaaaaata i latCha1.AFYH01275859 C 0 I 2 s gasAcu1.chrIX 215439 6 - 20249479 ---------------CACACA i gasAcu1.chrIX C 0 I 9 s oryLat2.chr24 3335767 6 - 24165179 ---------------CACACA i oryLat2.chr24 I 9 I 7 s gadMor1.HE569347 2064990 6 + 2123952 ---------------GGGAGA i gadMor1.HE569347 C 0 I 1 s danRer7.chr7 77252561 6 - 77276063 ---------------AGCAGT i danRer7.chr7 N 0 I 23 s petMar1.Contig205 26133 13 + 83855 --------GGACTGTGACAGT i petMar1.Contig205 C 0 C 0 e fr3.HE591961 83962 0 + 93265 C a score=-3919.000000 s mm10.chrUn_GL456394 16814 1 + 24323 -T s papHam1.scaffold6451 12147 1 + 110792 -t i papHam1.scaffold6451 N 0 C 0 s melGal1.chr8 3498462 1 + 38656188 -A i melGal1.chr8 C 0 C 0 s galGal4.chr2 96298134 1 + 148809762 -A i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462596 1 - 11201131 -a i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 891009 1 + 2272089 -A i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 397812 1 + 427269 -G i xenTro3.GL173416 C 0 C 0 s petMar1.Contig205 26146 1 + 83855 C- i petMar1.Contig205 C 0 C 0 e danRer7.chr7 77252567 23 - 77276063 I e sarHar1.chrX_GL868377_random 3154 0 - 7574 C e gadMor1.HE569347 2064996 1 + 2123952 I e latCha1.AFYH01275859 689 2 - 7455 I e fr3.HE591961 83962 0 + 93265 C e gasAcu1.chrIX 215445 9 - 20249479 I e oryLat2.chr24 3335773 7 - 24165179 I e ornAna1.Ultra516 5158773 0 - 10039024 C a score=707.000000 s mm10.chrUn_GL456394 16815 6 + 24323 CAGTGG s papHam1.scaffold6451 12148 6 + 110792 taaata i papHam1.scaffold6451 C 0 N 0 s sarHar1.chrX_GL868377_random 3154 5 - 7574 -AAAGG i sarHar1.chrX_GL868377_random C 0 I 2 s ornAna1.Ultra516 5158773 6 - 10039024 CAAGTG i ornAna1.Ultra516 C 0 I 1 s melGal1.chr8 3498463 6 + 38656188 CAATTG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96298135 6 + 148809762 CAGTGG i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462597 6 - 11201131 caaagg i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 891010 6 + 2272089 GAATGT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 397813 6 + 427269 CCATGG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 691 6 - 7455 caaggc i latCha1.AFYH01275859 I 2 I 1 s fr3.HE591961 83962 6 + 93265 CAGTCG i fr3.HE591961 C 0 C 0 s gasAcu1.chrIX 215454 6 - 20249479 AAGAGA i gasAcu1.chrIX I 9 C 0 s oryLat2.chr24 3335780 6 - 24165179 CAGTAG i oryLat2.chr24 I 7 I 2 s gadMor1.HE569347 2064997 3 + 2123952 ---TAG i gadMor1.HE569347 I 1 I 2 s danRer7.chr7 77252590 6 - 77276063 cacaca i danRer7.chr7 I 23 C 0 s petMar1.Contig205 26147 6 + 83855 CACTGG i petMar1.Contig205 C 0 C 0 a score=-202606.000000 s mm10.chrUn_GL456394 16821 50 + 24323 AG---CACT-ATG-ACAACACAGTG---------G---------------------AGCACTGTGAC--------AGTACAGAGG--AGT---A-CTGT- s sarHar1.chrX_GL868377_random 3161 52 - 7574 TG---GCCA-AGGTGCAACACAATT---------G---------------------GGTA-TCTTTC--------AGTAGAAGGGGAAcc---a-aggg- i sarHar1.chrX_GL868377_random I 2 C 0 s ornAna1.Ultra516 5158780 29 - 10039024 --------------------------------------------------------AATAATGCCAC--------AAGCAAGTGG--AAT---A-AAGT- i ornAna1.Ultra516 I 1 C 0 s melGal1.chr8 3498469 49 + 38656188 -GC--CTCT-GTG-ACATCACAATG---------G---------------------GGCACTGTGAT--------GTCATTATGG--ATA---T-TGT-- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96298141 49 + 148809762 -G---GTTT-GTG-ACTTCAAAATG---------G---------------------AGCATTGTTAT--------TCCTTAATGG--GGC---TCTCT-- i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462603 47 - 11201131 -g---gcac-atg-gcagcacaaag---------g---------------------ggcac-atggc--------agcacaaagg--agc---a-cat-- i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 891016 49 + 2272089 -G---ACATAGTG-ACATCACAATA---------C---------------------AGCACTGTGAC--------ATCATGAGGA--AGC---A-CAC-- i chrPic1.JH584847 C 0 T 307 s xenTro3.GL173416 397819 49 + 427269 GG---CCCA-ATG-ATATTGCTGTG---------G---------------------GGCCCAATGAT--------ATTACTGTGG--GGC---C-CAA-- i xenTro3.GL173416 C 0 I 1 s latCha1.AFYH01275859 698 59 - 7455 --ggcactt-aaa-acaaaaaaataattgagggcg---------------------ggcaaaagaaa--------tAAGCAAAGG--CGG---G-CAC-- i latCha1.AFYH01275859 I 1 I 4 s fr3.HE591961 83968 48 + 93265 ---TGCACT-GAA-ACATCCCAAAC---------G---------------------TGCACTGAAAC---------ATCCAAAAA--CGT---G-CAC-- i fr3.HE591961 C 0 I 3 s gasAcu1.chrIX 215460 47 - 20249479 ---CACACG-GTG-ACTACAAAGAG---------A---------------------CACACGGTGAC----------CACAAAGA--GAC---A-CAC-- i gasAcu1.chrIX C 0 I 3 s oryLat2.chr24 3335788 47 - 24165179 ---TACACG-GTG-GTAACAGTAGA---------T---------------------CCCACTGTAGT----------GAAAGTGG--TTT---A-CAA-- i oryLat2.chr24 I 2 I 3 s gadMor1.HE569347 2065002 50 + 2123952 ---TGTGTT-GGA-GGGACAGTGGG---------G---------------------TGAGGTAGAGG----------GACAGCGG--GGTGAGG-TAG-- i gadMor1.HE569347 I 2 I 3 s danRer7.chr7 77252596 81 - 77276063 ---cacaca-caG-TCAGCATTAGT---------GTTGATCTGATCTCTTTCACTCTATACTGTGAATGTGCATTTTTACAGCAG--TGTAAAT-CTC-- i danRer7.chr7 C 0 I 3 s petMar1.Contig205 26153 50 + 83855 ---GGGACT-GTG-ACAGTGCACTG---------G---------------------GGGACTGTGAC--------AGTCCACTGG--GGG---A-CTG-T i petMar1.Contig205 C 0 C 0 a score=11937.000000 s mm10.chrUn_GL456394 16871 13 + 24323 GACACCACAGTGG s sarHar1.chrX_GL868377_random 3213 13 - 7574 aacagcacagtag i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158809 13 - 10039024 GACAAGCAAGTGG i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498518 13 + 38656188 GACGTCACAGTGG i melGal1.chr8 C 0 T 148 s galGal4.chr2 96298190 13 + 148809762 GATGTCACAATTG i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462650 13 - 11201131 ggcagcacagaga i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 890758 13 + 2272089 GATGCTGCAGCAG i chrPic1.JH584847 T 307 C 0 s xenTro3.GL173416 397869 13 + 427269 GATATTACCGTGG i xenTro3.GL173416 I 1 C 0 s latCha1.AFYH01275859 761 13 - 7455 gacaaaaaaataa i latCha1.AFYH01275859 I 4 I 2 s fr3.HE591961 84019 13 + 93265 AACATCCCAGTCA i fr3.HE591961 I 3 C 0 s gasAcu1.chrIX 215510 13 - 20249479 GACTACAAAGAGA i gasAcu1.chrIX I 3 C 0 s oryLat2.chr24 3335838 13 - 24165179 AACAAAAGTAGAT i oryLat2.chr24 I 3 C 0 s gadMor1.HE569347 2065055 13 + 2123952 GACAGCAgggtga i gadMor1.HE569347 I 3 C 0 s danRer7.chr7 77252680 13 - 77276063 AACACCAGTGTAA i danRer7.chr7 I 3 C 0 s petMar1.Contig205 26203 13 + 83855 CACAGATTACTGG i petMar1.Contig205 C 0 C 0 a score=-17604.000000 s mm10.chrUn_GL456394 16884 5 + 24323 --AGCAC s sarHar1.chrX_GL868377_random 3226 5 - 7574 --gaGTC i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158822 5 - 10039024 --AATAA i ornAna1.Ultra516 C 0 C 0 s galGal4.chr2 96298203 5 + 148809762 --GGCTC i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462663 5 - 11201131 --ggcac i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 890771 3 + 2272089 ----CGT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 397882 5 + 427269 --GGCCC i xenTro3.GL173416 C 0 T 40 s latCha1.AFYH01275859 776 3 - 7455 --gac-- i latCha1.AFYH01275859 I 2 C 0 s fr3.HE591961 84032 5 + 93265 --TGCAC i fr3.HE591961 C 0 C 0 s gasAcu1.chrIX 215523 5 - 20249479 --CACAC i gasAcu1.chrIX C 0 C 0 s oryLat2.chr24 3335851 5 - 24165179 --CACAT i oryLat2.chr24 C 0 C 0 s gadMor1.HE569347 2065068 5 + 2123952 --ggtag i gadMor1.HE569347 C 0 C 0 s danRer7.chr7 77252693 5 - 77276063 --ATCTC i danRer7.chr7 C 0 C 0 s petMar1.Contig205 26216 5 + 83855 GGGAC-- i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498531 148 + 38656188 T a score=-1958.000000 s mm10.chrUn_GL456394 16889 1 + 24323 T s sarHar1.chrX_GL868377_random 3231 1 - 7574 T i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158827 1 - 10039024 T i ornAna1.Ultra516 C 0 C 0 s galGal4.chr2 96298208 1 + 148809762 T i galGal4.chr2 C 0 C 0 s latCha1.AFYH01275859 779 1 - 7455 g i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84037 1 + 93265 T i fr3.HE591961 C 0 C 0 s gasAcu1.chrIX 215528 1 - 20249479 G i gasAcu1.chrIX C 0 C 0 s oryLat2.chr24 3335856 1 - 24165179 G i oryLat2.chr24 C 0 C 0 s gadMor1.HE569347 2065073 1 + 2123952 a i gadMor1.HE569347 C 0 C 0 s danRer7.chr7 77252698 1 - 77276063 A i danRer7.chr7 C 0 C 0 s petMar1.Contig205 26221 1 + 83855 T i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498531 148 + 38656188 T e taeGut1.chr18 1462668 0 - 11201131 C e xenTro3.GL173416 397887 40 + 427269 T e chrPic1.JH584847 890774 0 + 2272089 C a score=-28896.000000 s mm10.chrUn_GL456394 16890 13 + 24323 GCAACAAC--AAAGT----- s sarHar1.chrX_GL868377_random 3232 13 - 7574 TTAGGTAG--AAGAT----- i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158828 13 - 10039024 GCCACAAG--CAAGT----- i ornAna1.Ultra516 C 0 C 0 s galGal4.chr2 96298209 13 + 148809762 GTGGCCTC--CAAAT----- i galGal4.chr2 C 0 I 48 s taeGut1.chr18 1462668 13 - 11201131 atggcagc-acaaa------ i taeGut1.chr18 C 0 I 24 s chrPic1.JH584847 890774 13 + 2272089 ATGGACAC--CAGCT----- i chrPic1.JH584847 C 0 I 47 s latCha1.AFYH01275859 780 15 - 7455 gcgggcacttaaaat----- i latCha1.AFYH01275859 C 0 I 2 s fr3.HE591961 84038 13 + 93265 GAAACATC--CCAGT----- i fr3.HE591961 C 0 I 2 s gasAcu1.chrIX 215529 13 - 20249479 GTGACCAC--AAAGA----- i gasAcu1.chrIX C 0 I 2 s oryLat2.chr24 3335857 13 - 24165179 GTGGTAAC--AGTAG----- i oryLat2.chr24 C 0 I 2 s gadMor1.HE569347 2065074 13 + 2123952 gagacagt--aaggt----- i gadMor1.HE569347 C 0 I 2 s danRer7.chr7 77252699 13 - 77276063 GAAAGACC--AGTGT----- i danRer7.chr7 C 0 I 2 s petMar1.Contig2882 23636 12 + 35692 --------GACAGATCATGT i petMar1.Contig2882 n 0 C 0 e melGal1.chr8 3498531 148 + 38656188 T e xenTro3.GL173416 397887 40 + 427269 T a score=-37161.000000 s mm10.chrUn_GL456394 16903 7 + 24323 --GAAACA--C s sarHar1.chrX_GL868377_random 3245 5 - 7574 --GGGGT---- i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158841 9 - 10039024 --GGAATAATC i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498383 9 + 38656188 --GGAAAGTCC i melGal1.chr8 T 148 C 0 s galGal4.chr2 96298270 9 + 148809762 --TCAATATCT i galGal4.chr2 I 48 C 0 s taeGut1.chr18 1462705 9 - 11201131 --cacATGGTG i taeGut1.chr18 I 24 C 0 s chrPic1.JH584847 890834 9 + 2272089 --GACATTTCT i chrPic1.JH584847 I 47 C 0 s latCha1.AFYH01275859 797 5 - 7455 --aaaat---- i latCha1.AFYH01275859 I 2 C 0 s fr3.HE591961 84053 5 + 93265 --TGCAC---- i fr3.HE591961 I 2 C 0 s gasAcu1.chrIX 215544 5 - 20249479 --CACAC---- i gasAcu1.chrIX I 2 C 0 s oryLat2.chr24 3335872 5 - 24165179 --AACAC---- i oryLat2.chr24 I 2 C 0 s gadMor1.HE569347 2065089 5 + 2123952 --aggag---- i gadMor1.HE569347 I 2 C 0 s danRer7.chr7 77252714 5 - 77276063 --ATCTC---- i danRer7.chr7 I 2 C 0 s petMar1.Contig2882 23648 7 + 35692 GACACAC---- i petMar1.Contig2882 C 0 C 0 e xenTro3.GL173416 397887 40 + 427269 T a score=-8385.000000 s mm10.chrUn_GL456394 16910 3 + 24323 TGA-- s sarHar1.chrX_GL868377_random 3250 3 - 7574 TGA-- i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158850 3 - 10039024 TCA-- i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498392 3 + 38656188 TCA-- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96298279 3 + 148809762 TCA-- i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462714 3 - 11201131 GCA-- i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 890843 3 + 2272089 GCA-- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 397847 3 + 427269 TGA-- i xenTro3.GL173416 T 40 C 0 s latCha1.AFYH01275859 802 1 - 7455 --a-- i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84058 3 + 93265 TTA-- i fr3.HE591961 C 0 I 269 s gasAcu1.chrIX 215549 3 - 20249479 GGT-- i gasAcu1.chrIX C 0 C 0 s oryLat2.chr24 3335877 3 - 24165179 TGT-- i oryLat2.chr24 C 0 C 0 s gadMor1.HE569347 2065094 3 + 2123952 agg-- i gadMor1.HE569347 C 0 C 0 s danRer7.chr7 77252719 3 - 77276063 TGA-- i danRer7.chr7 C 0 C 0 s petMar1.Contig2882 23655 3 + 35692 --AGG i petMar1.Contig2882 C 0 C 0 a score=-119724.000000 s mm10.chrUn_GL456394 16913 43 + 24323 --CACAACAGTGGAGCACTGTGCCACCAGAGTGGAACAATATAAC s sarHar1.chrX_GL868377_random 3253 26 - 7574 --GGGAACAG-------------CACAATAGGGGG----TCTTTC i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158853 43 - 10039024 --CAAGCAACTGGAATAATGCCCCAAACAAGTGGAATAATCTCCC i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498395 43 + 38656188 --TGAACAAACCCGATTCTTAGGCAGGCAAGCTGCAAATTGTGAC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96298282 38 + 148809762 --CAATGCACCTCAA-----AGACATCACAATGAGACTCTGCGAT i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462717 36 - 11201131 --CAAAGGAGCACA------TGGCAGCACAAAGGAGCAc-atggc i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 890846 37 + 2272089 --CTA-CCACCGGGA-----AGACATTCTAGTGCAATTGGGTGAT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 397850 43 + 427269 --TATTACTGTGGGGCCCAATGATATTACCGTGGGGCCCAATGAT i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 803 43 - 7455 --aacaagggtggggaaaaaataaatgagggtgggcaattaaaat i latCha1.AFYH01275859 C 0 C 0 s gasAcu1.chrIX 215552 24 - 20249479 ---------------------GACCACAAAGAGACACACGGTGAC i gasAcu1.chrIX C 0 T 107 s oryLat2.chr24 3335880 24 - 24165179 ---------------------AGTAACAGTAGATCACACGGTAGT i oryLat2.chr24 C 0 I 21 s gadMor1.HE569347 2065097 17 + 2123952 ---------------------gacagcAGGG-------TGTGAGT i gadMor1.HE569347 C 0 I 24 s danRer7.chr7 77252722 24 - 77276063 ---------------------AACACCAGTGTAAATCTCAGAACC i danRer7.chr7 C 0 I 21 s petMar1.Contig2882 23658 44 + 35692 GGCAGCACTGACAGACCGTGTGACACACAGGGGCAGCACTGACA- i petMar1.Contig2882 C 0 C 0 e fr3.HE591961 84061 269 + 93265 I a score=-110351.000000 s mm10.chrUn_GL456394 16956 39 + 24323 AGTAGAGTG--------------GAG--CATTGTGACACCACAGTGTGGCAC--TGT-------- s sarHar1.chrX_GL868377_random 3279 43 - 7574 GGTAGAAGG--------------GGGTCCAAGGGAACAACACAGGAGGGAGTCTTTT-------- i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158896 24 - 10039024 AAACAAGTG--------------GAA-------TAATCTCACAAG-------------------- i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498438 30 + 38656188 GTCGCAACG--------------GGG--CGCAGTGACGGCACAATT------------------- i melGal1.chr8 C 0 I 103 s galGal4.chr2 96298320 30 + 148809762 ATCAAATTG--------------TGG--CTTTCTGACATGCCAGAT------------------- i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462753 30 - 11201131 agcacagag--------------aga--gcaTGTGGCAGCACAAAG------------------- i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 890883 20 + 2272089 GTTTTGACA--------------ATG--CCTCACTG----------------------------- i chrPic1.JH584847 C 0 I 14 s xenTro3.GL173416 397893 41 + 427269 ATTGCTGTG--------------GGG--CCCAATGATATTGCTGTGGGGCCCAATGA-------- i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 846 38 - 7455 aaaaaaataaatgagggcagtttaaa--aaaaatgatggc------------------------- i latCha1.AFYH01275859 C 0 I 2 s gasAcu1.chrVI 1392798 39 - 17083675 AGAAGAGAG--------------GCG--CTAATTGCTGTTGTCAAGTGACTTTGT---------- i gasAcu1.chrVI n 107 I 7 s oryLat2.chr24 3335925 39 - 24165179 AAAAGTAGA--------------TTA--TTCAGTGGCAACAGCAGATTACACAGT---------- i oryLat2.chr24 I 21 I 15 s gadMor1.HE569347 2065138 39 + 2123952 AGTAGGGTG--------------AGG--TAGAGGGACAGCAGGGTGAGGTAGAGT---------- i gadMor1.HE569347 I 24 I 2 s danRer7.chr7 77252767 35 - 77276063 ACCAGTGTA--------------AAT--CTCAGAACCACCAGTGTAAATTT-------------- i danRer7.chr7 I 21 C 0 s petMar1.Contig2882 23702 49 + 35692 GATCGTGTG--------------GCA--CACAGGGACAGCACTGACAAATCATGTGACACACAGG i petMar1.Contig2882 C 0 C 0 e fr3.HE591961 84061 269 + 93265 I a score=-11727.000000 s mm10.chrUn_GL456394 16995 12 + 24323 GACAGCACAGTG--- s sarHar1.chrX_GL868377_random 3322 12 - 7574 GGTAGAAGGTGG--- i sarHar1.chrX_GL868377_random C 0 C 0 s xenTro3.GL173416 397934 10 + 427269 TATTGCTGTG----- i xenTro3.GL173416 C 0 I 1 s fr3.chr17 68788 10 + 11184067 Cacagcagtg----- i fr3.chr17 n 269 C 0 s gasAcu1.chrVI 1392844 10 - 17083675 CACGATGGCG----- i gasAcu1.chrVI I 7 C 0 s oryLat2.chr24 3335979 10 - 24165179 CACGGTAGTA----- i oryLat2.chr24 I 15 C 0 s gadMor1.HE569347 2065179 10 + 2123952 CAGCACAGTG----- i gadMor1.HE569347 I 2 C 0 s danRer7.chr7 77252802 10 - 77276063 CATAACCACC----- i danRer7.chr7 C 0 C 0 s petMar1.Contig2882 23751 13 + 35692 GGCAGCACTG--ACA i petMar1.Contig2882 C 0 C 0 e melGal1.chr8 3498468 103 + 38656188 I e taeGut1.chr18 1462783 0 - 11201131 C e latCha1.AFYH01275859 884 2 - 7455 I e galGal4.chr2 96298350 0 + 148809762 C e chrPic1.JH584847 890903 14 + 2272089 I e ornAna1.Ultra516 5158920 0 - 10039024 C a score=-120374.000000 s mm10.chrUn_GL456394 17007 33 + 24323 GAGCATG------------TGACACCATAGAGGAGCAC--TATGACA s sarHar1.chrX_GL868377_random 3334 32 - 7574 GCGAAGG------------TG-CAGCATAGTAGGTGGG--CATTACA i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158920 19 - 10039024 ----------------------CAAC----TGGAATAA--TGCCACA i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498571 33 + 38656188 GGTATTG------------TGACATCACAGTGGGGCAC--TGTTACA i melGal1.chr8 I 103 C 0 s galGal4.chr2 96298350 34 + 148809762 -GATCTC------------TGGCGTTGCAAAGGGGCTCTGTGTGGCA i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462783 35 - 11201131 GGGCACA------------TGGCAGCACAAAGGAGCACATGGTGGCA i taeGut1.chr18 C 0 T 286 s chrPic1.JH584847 890917 30 + 2272089 CAATTAT------------TGACATTTTCCTGGGGTGCAACG----- i chrPic1.JH584847 I 14 C 0 s xenTro3.GL173416 397945 33 + 427269 GGCCCAA------------TGATATTACTGTGGGGCCC--AATGATA i xenTro3.GL173416 I 1 T 91 s latCha1.AFYH01275859 886 31 - 7455 gcattta------------aaacaaaaaaaataagggc--aggca-- i latCha1.AFYH01275859 I 2 C 0 s fr3.chr17 68798 12 + 11184067 gtgtgtg------------tggcA----------------------- i fr3.chr17 C 0 C 0 s gasAcu1.chrVI 1392854 12 - 17083675 GGGGCTG------------TGACA----------------------- i gasAcu1.chrVI C 0 I 5 s oryLat2.chr24 3335989 24 - 24165179 ATAGTAGATCATATATTAATAACA----------------------- i oryLat2.chr24 C 0 C 0 s gadMor1.HE569347 2065189 9 + 2123952 AGAG---------------TGACA----------------------- i gadMor1.HE569347 C 0 C 0 s danRer7.chr7 77252812 19 - 77276063 AGTGTAAATCTCAG-----AAACA----------------------- i danRer7.chr7 C 0 C 0 s petMar1.Contig2882 23764 27 + 35692 GATCATG------------TGACA---CACAGGGGTAG--CATT--- i petMar1.Contig2882 C 0 C 0 a score=-4946.000000 s mm10.chrUn_GL456394 17040 3 + 24323 ACA s sarHar1.chrX_GL868377_random 3366 3 - 7574 TAG i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158939 3 - 10039024 AGC i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498604 3 + 38656188 GCA i melGal1.chr8 C 0 I 1 s galGal4.chr2 96298384 3 + 148809762 CCG i galGal4.chr2 C 0 I 1 s latCha1.AFYH01275859 917 3 - 7455 aaa i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 68810 3 + 11184067 CCG i fr3.chr17 C 0 C 0 s gasAcu1.chrVI 1392871 3 - 17083675 GAG i gasAcu1.chrVI I 5 C 0 s oryLat2.chr24 3336013 3 - 24165179 GTA i oryLat2.chr24 C 0 C 0 s gadMor1.HE569347 2065198 3 + 2123952 GTA i gadMor1.HE569347 C 0 C 0 s danRer7.chr7 77252831 3 - 77276063 CCA i danRer7.chr7 C 0 C 0 e taeGut1.chr18 1462818 286 - 11201131 T e petMar1.Contig2882 23791 0 + 35692 C e xenTro3.GL173416 397978 91 + 427269 T e chrPic1.JH584847 890947 0 + 2272089 C a score=-35306.000000 s mm10.chrUn_GL456394 17043 11 + 24323 AAGTGGAAAAT s sarHar1.chrX_GL868377_random 3369 9 - 7574 AAGGGCCAA-- i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158942 11 - 10039024 AACTGGAATAA i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498608 4 + 38656188 AATG------- i melGal1.chr8 I 1 C 0 s galGal4.chr2 96298388 10 + 148809762 AATGGGTGC-C i galGal4.chr2 I 1 C 0 s taeGut1.chr10 18903977 9 - 20806668 AAAAGGCGC-- i taeGut1.chr10 n 286 C 0 s latCha1.AFYH01275859 920 9 - 7455 aaaaaaaat-- i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 68813 2 + 11184067 ---------GT i fr3.chr17 C 0 I 3 s gasAcu1.chrVI 1392874 2 - 17083675 ---------GT i gasAcu1.chrVI C 0 I 4 s oryLat2.chr24 3336016 2 - 24165179 ---------GA i oryLat2.chr24 C 0 I 9 s gadMor1.HE569347 2065201 2 + 2123952 ---------GG i gadMor1.HE569347 C 0 I 9 s danRer7.chr7 77252834 2 - 77276063 ---------GT i danRer7.chr7 C 0 I 9 s petMar1.Contig2882 23791 7 + 35692 GAGAGAT---- i petMar1.Contig2882 C 0 C 0 e xenTro3.GL173416 397978 91 + 427269 T e chrPic1.JH584847 890947 0 + 2272089 C a score=-5465.000000 s mm10.chrUn_GL456394 17054 1 + 24323 -A s ornAna1.Ultra516 5158953 1 - 10039024 -T i ornAna1.Ultra516 C 0 C 0 s galGal4.chr2 96298398 1 + 148809762 -T i galGal4.chr2 C 0 C 0 s xenTro3.GL173416 397887 1 + 427269 -A i xenTro3.GL173416 T 91 C 0 s fr3.chr17 68818 1 + 11184067 -C i fr3.chr17 I 3 C 0 s gasAcu1.chrVI 1392880 1 - 17083675 -T i gasAcu1.chrVI I 4 C 0 s oryLat2.chr24 3336027 1 - 24165179 -A i oryLat2.chr24 I 9 C 0 s gadMor1.HE569347 2065212 1 + 2123952 -A i gadMor1.HE569347 I 9 C 0 s danRer7.chr7 77252845 1 - 77276063 -A i danRer7.chr7 I 9 C 0 s petMar1.Contig2882 23798 1 + 35692 C- i petMar1.Contig2882 C 0 n 0 e sarHar1.chrX_GL868377_random 3378 0 - 7574 C e melGal1.chr8 3498612 0 + 38656188 C e taeGut1.chr10 18903986 0 - 20806668 C e latCha1.AFYH01275859 929 0 - 7455 C e chrPic1.JH584847 890947 0 + 2272089 C a score=-289584.000000 s mm10.chrUn_GL456394 17055 90 + 24323 GTGACACCAC---------AGTG--------GAACACTGTGAAAC-----CAAACT-----------GGAG-----------------CAGTGTGACAGCACAGTGGAGCA-------CTCT-------------GACATCACAGTGGAGCCCTGTGATA s sarHar1.chrX_GL868377_random 3378 90 - 7574 GGAACAACAC---------AGTA--------GGGTATCTTTCGGT-----AGAAGG-----------GTGG-----------------CAAAGCTGCAGCACAGTAGGTGG-------ACTT-------------TAGATAGAAGGGGGGCCAAGGAACA i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5158954 75 - 10039024 GCCACAAGCA---------AGTG--------GAATAATGTCACAA-----GCAACT-----------GGAA-----------------TAATGCCACA----AGCAGAATA-------ATCC-------------CACATGtaa-----------taata i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498612 74 + 38656188 --------------------------------GGCTCTGTGACAT-----CACAAT-----------GCGG-----------------CTCTGTGATGTCAT-AATGGGCT-------CTGT-------------GACATCACAATGGGGCTCTGTGATG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96298399 92 + 148809762 GTGATGTGTG---------CTTG--------AGGCTCTTTGTCAT-----TTGAAT--------ATAGCAG-----------------CTCTGTGACGTcacaaaaaaatt-------ctgt-------------gaaatCACAATGCAG-TCTGTGATG i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18903986 89 - 20806668 --------------------------------GCCCCTCTGCCGCGCATgcggggtaggagcggacagcgg-----------------gaccg-gacagcgggacggggca-------ccgg-------------gacagcgggatggggcaccgggac- i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 890947 81 + 2272089 ---------------------------------GCATTGTAACAA-----CACGAT-----------GCAG-----------------CACTATGACATCACAACACAGCTAATCACAATGT-------------GATATCAGAATGTGACATAGTGACA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 397888 90 + 427269 ATGATATTGC---------TGTG--------GGGCCCAATGATAT-----TGCTGT-----------GGGG-----------------CCCAATGATATTGCTGTGGGGCC-------CAAT-------------GATATTACTGTGGGGCCCAATGATA i xenTro3.GL173416 C 0 I 41 s latCha1.AFYH01275859 929 73 - 7455 -------aac---------ggcg--------ggcacttaaaacaa-----aaaaat----------------------------------aaatgagggcaggcaaaaaaa------------------------taagcgagggtgggcatttgaaaca i latCha1.AFYH01275859 C 0 I 5 s fr3.chr17 68819 74 + 11184067 ATGAC--------------GATG--------ACTTGGAATCCCAG-----ATAGCT-----------CAGG-----------------AACATGGCTGCCGTCAGGAG---------------------------GACCGGACG----ACTTTGGGGACC i fr3.chr17 C 0 C 0 s gasAcu1.chrVI 1392881 86 - 17083675 GTGACAGGA----------GGTG-------CACTGTGACTGACAG-----AGAG-------------GAGG-----------------TGCACTGTGACAGAGAGGAGGTG-------CACTGT-----------GACAGGAGG----TGCACTGTGACT i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336028 129 - 24165179 GTAACAGTAAACAGTGTTGGGTAAATTACTTACTGTGTAATAAAG-----GTAGAT-----------CAAACCTTGGTAACAGTAGATTACATTGTAGTAACAGTGGATCC-------CACTGTAGTAACTATA-GACCACATG-------GTAGTAACA i oryLat2.chr24 C 0 C 0 s gadMor1.HE569347 2065213 82 + 2123952 GGGACAGCAC---------GGTG------------AGAGTGACAG-----TAGGAT-----------GAGG-----------------TAGAGTGACAGCACGGTGAGAGC------------------------GACAGTAGGGTGAGGTAGAGGGACA i gadMor1.HE569347 C 0 C 0 s danRer7.chr7 77252846 91 - 77276063 GAAACACC-----------AGTG------------TAAATCTCAG-----AAAC----------------------------------ACCAGTGTAAATCTCAGAAACAC-------CTGTGTAAATCTTACACAACACCAGTGTAAACCTATGAAACA i danRer7.chr7 C 0 C 0 s petMar1.Contig205 26222 90 + 83855 GTGACAGTCC---------ACTG--------GGGGACTGTCACAG-----ATCACT-----------AGGG-----------------GACTGTCACAGATCactggggga-------ctgt-------------cacagtccactgggggactgggagg i petMar1.Contig205 C 0 C 0 a score=-56712.000000 s mm10.chrUn_GL456394 17145 13 + 24323 A--------------------CAAAGTGGG---ACA s sarHar1.chrX_GL868377_random 3468 13 - 7574 G--------------------CACAGTAGG---AGG i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5159029 16 - 10039024 a--------------------taatgttggtattcg i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498686 13 + 38656188 T--------------------CACAATGCA---GCT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96298491 13 + 148809762 T--------------------CACAATGGA---ACA i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904075 13 - 20806668 T--------------------ATTGGAGGA---GCA i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891028 13 + 2272089 T--------------------CACAATACA---GCA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398019 13 + 427269 T--------------------TACTGTGGG---GCC i xenTro3.GL173416 I 41 C 0 s latCha1.AFYH01275859 1007 13 - 7455 t--------------------aaacgaggg---cgg i latCha1.AFYH01275859 I 5 C 0 s fr3.chr17 68893 13 + 11184067 G--------------------GACCGTCAG---AAA i fr3.chr17 C 0 I 10 s gasAcu1.chrVI 1392967 33 - 17083675 GACAGAGAGGAGGTGCACTGTGACTGACAG---AGA i gasAcu1.chrVI C 0 I 24 s oryLat2.chr24 3336157 7 - 24165179 G--------------------------TAG---ATA i oryLat2.chr24 C 0 I 15 s gadMor1.HE569347 2065295 13 + 2123952 G--------------------TAGGGTGAG---GTA i gadMor1.HE569347 C 0 T 364 s danRer7.chr7 77252937 10 - 77276063 C--------------------CAGTGTACA------ i danRer7.chr7 C 0 I 17 s petMar1.Contig205 26312 13 + 83855 ------------------gatgactggggg---a-- i petMar1.Contig205 C 0 C 0 a score=-47117.000000 s mm10.chrUn_GL456394 17158 29 + 24323 TGGAGACA-CCACAGTG----GAGAACTGTGACA s sarHar1.chrX_GL868377_random 3481 29 - 7574 tttttttG-TAGAATGG----GGGCAAGGGAGCA i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5159045 33 - 10039024 ttaagccc-ttactatgtgccgagcattgttcta i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498699 30 + 38656188 CTGTGATTGTCACAGTG----GGATTCTGTGACG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96298504 29 + 148809762 TTGTGATT-CCATAATG----GGACTCTGGGACG i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904088 29 - 20806668 CCGGGACT-GCAGGATG----GGGCACCGAGACT i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891041 19 + 2272089 CTGTGACA-TCATGAGG----AAG---------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398032 29 + 427269 CAATGATA-TTGCTGTG----GGGCCCAATGATA i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1020 29 - 7455 gcaaaaga-aaaaaata----aggaactgtAGCG i latCha1.AFYH01275859 C 0 C 0 s gasAcu1.chrVI 1393024 10 - 17083675 ---------------AG----GAG-----ATGCA i gasAcu1.chrVI I 24 I 8 s oryLat2.chr24 3336179 11 - 24165179 ---------------TA----GAGC----ATACA i oryLat2.chr24 I 15 I 9 s danRer7.chr7 77252964 15 - 77276063 ---------------TA----AATCTCAGAAACA i danRer7.chr7 I 17 I 21 s petMar1.Contig205 26325 29 + 83855 ctggcaca-gatcagtg----ggggactgTGACA i petMar1.Contig205 C 0 C 0 e gadMor1.HE569347 2065308 364 + 2123952 T e fr3.chr17 68906 10 + 11184067 I a score=-50658.000000 s mm10.chrUn_GL456394 17187 17 + 24323 GCACATTG--------GAGCATTGT s sarHar1.chrX_GL868377_random 3510 17 - 7574 CCACAGTA--------GGGGGTCTT i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5159078 12 - 10039024 a-gcactg--------gggta---- i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498729 17 + 38656188 TCACAATG--------GGGCTCTGT i melGal1.chr8 C 0 T 278 s galGal4.chr2 96298533 25 + 148809762 TCACATTGTGCTGTGTGGCCTCTGA i galGal4.chr2 C 0 I 7 s taeGut1.chr10 18904117 17 - 20806668 GCAGGATG--------GGGCACCGG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891060 6 + 2272089 -CACACT------------------ i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1049 17 - 7455 GCTCACTG--------GCACCCCCT i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 68916 4 + 11184067 -----------GGAG---------- i fr3.chr17 I 10 C 0 s gasAcu1.chrVI 1393042 13 - 17083675 -----------GGAG-GTGCACTGT i gasAcu1.chrVI I 8 C 0 s oryLat2.chr24 3336199 14 - 24165179 -----------GTAGAGCACACGGT i oryLat2.chr24 I 9 C 0 s danRer7.chr7 77253000 14 - 77276063 -----------CCAGTGTAAATCTC i danRer7.chr7 I 21 C 0 s petMar1.Contig205 26354 17 + 83855 GTCCACTG--------GTGGACTGT i petMar1.Contig205 C 0 C 0 e gadMor1.HE569347 2065308 364 + 2123952 T e xenTro3.GL173416 398061 0 + 427269 C a score=-3013.000000 s mm10.chrUn_GL456394 17204 5 + 24323 TACAA s sarHar1.chrX_GL868377_random 3527 5 - 7574 TACGA i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5159090 2 - 10039024 ---ga i ornAna1.Ultra516 C 0 C 0 s galGal4.chr2 96298565 5 + 148809762 TACGC i galGal4.chr2 I 7 C 0 s taeGut1.chr10 18904134 2 - 20806668 ---GA i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891066 5 + 2272089 AACAT i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1066 5 - 7455 GGTGG i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 68920 1 + 11184067 ----G i fr3.chr17 C 0 C 0 s gasAcu1.chrVI 1393055 5 - 17083675 GACAG i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336213 5 - 24165179 AGTAA i oryLat2.chr24 C 0 C 0 s danRer7.chr7 77253014 5 - 77276063 AAAAA i danRer7.chr7 C 0 C 0 s petMar1.Contig205 26371 5 + 83855 GACAG i petMar1.Contig205 C 0 T 269 e melGal1.chr8 3498746 278 + 38656188 T e gadMor1.HE569347 2065308 364 + 2123952 T e xenTro3.GL173416 398061 0 + 427269 C a score=-603.000000 s mm10.chrUn_GL456394 17209 1 + 24323 C s sarHar1.chrX_GL868377_random 3532 1 - 7574 A i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5159092 1 - 10039024 c i ornAna1.Ultra516 C 0 C 0 s galGal4.chr2 96298570 1 + 148809762 C i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904136 1 - 20806668 C i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891071 1 + 2272089 C i chrPic1.JH584847 C 0 I 449 s latCha1.AFYH01275859 1071 1 - 7455 T i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 68921 1 + 11184067 G i fr3.chr17 C 0 C 0 s gasAcu1.chrVI 1393060 1 - 17083675 A i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336218 1 - 24165179 C i oryLat2.chr24 C 0 C 0 s danRer7.chr7 77253019 1 - 77276063 C i danRer7.chr7 C 0 C 0 s petMar1.Contig87884 314 1 + 4648 C i petMar1.Contig87884 n 269 C 0 e melGal1.chr8 3498746 278 + 38656188 T e gadMor1.HE569347 2065308 364 + 2123952 T e xenTro3.GL173416 398061 0 + 427269 C a score=-22415.000000 s mm10.chrUn_GL456394 17210 6 + 24323 --AAAGAA s sarHar1.chrX_GL868377_random 3533 6 - 7574 --AAAGGG i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5159093 6 - 10039024 --acaggg i ornAna1.Ultra516 C 0 C 0 s galGal4.chr2 96298571 2 + 148809762 ------AA i galGal4.chr2 C 0 I 4 s taeGut1.chr10 18904137 2 - 20806668 ------TA i taeGut1.chr10 C 0 I 6 s chrPic1.JH584847 891521 6 + 2272089 --AAAGGA i chrPic1.JH584847 I 449 C 0 s latCha1.AFYH01275859 1072 3 - 7455 -----GGA i latCha1.AFYH01275859 C 0 I 2 s fr3.chr17 68922 4 + 11184067 ----AACG i fr3.chr17 C 0 I 2 s gasAcu1.chrVI 1393061 4 - 17083675 ----GGAG i gasAcu1.chrVI C 0 I 2 s oryLat2.chr24 3336219 4 - 24165179 ----AGTA i oryLat2.chr24 C 0 I 2 s danRer7.chr7 77253020 4 - 77276063 ----ACCA i danRer7.chr7 C 0 I 2 s petMar1.Contig87884 315 6 + 4648 GCAAAG-- i petMar1.Contig87884 C 0 C 0 e melGal1.chr8 3498746 278 + 38656188 T e gadMor1.HE569347 2065308 364 + 2123952 T e xenTro3.GL173416 398061 0 + 427269 C a score=-25487.000000 s mm10.chrUn_GL456394 17216 7 + 24323 G-AACATG s sarHar1.chrX_GL868377_random 3539 8 - 7574 GTGGCAAA i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5159099 7 - 10039024 g-aatcag i ornAna1.Ultra516 C 0 C 0 s galGal4.chr2 96298577 6 + 148809762 --AAAAAC i galGal4.chr2 I 4 C 0 s taeGut1.chr10 18904145 7 - 20806668 G-GGCACC i taeGut1.chr10 I 6 C 0 s chrPic1.JH584847 891527 4 + 2272089 ----TGat i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1077 7 - 7455 -GGGTATC i latCha1.AFYH01275859 I 2 C 0 s fr3.chr17 68928 5 + 11184067 ---GCTcg i fr3.chr17 I 2 I 4 s gasAcu1.chrVI 1393067 5 - 17083675 ---GCACT i gasAcu1.chrVI I 2 I 4 s oryLat2.chr24 3336225 5 - 24165179 ---TCAAA i oryLat2.chr24 I 2 I 5 s danRer7.chr7 77253026 5 - 77276063 ---GTAAA i danRer7.chr7 I 2 I 5 s petMar1.Contig87884 321 7 + 4648 -GGGCGCT i petMar1.Contig87884 C 0 C 0 e melGal1.chr8 3498746 278 + 38656188 T e gadMor1.HE569347 2065308 364 + 2123952 T e xenTro3.GL173416 398061 0 + 427269 C a score=309.000000 s mm10.chrUn_GL456394 17223 2 + 24323 GT s sarHar1.chrX_GL868377_random 3547 2 - 7574 GG i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5159106 2 - 10039024 gt i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498468 2 + 38656188 GG i melGal1.chr8 T 278 I 7 s galGal4.chr2 96298583 2 + 148809762 GG i galGal4.chr2 C 0 I 1849 s taeGut1.chr10 18904152 2 - 20806668 GG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891531 2 + 2272089 gg i chrPic1.JH584847 C 0 I 3 s xenTro3.GL173409 317656 2 - 436458 GT i xenTro3.GL173409 n 0 I 3 s latCha1.AFYH01275859 1084 2 - 7455 GC i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 68937 2 + 11184067 ga i fr3.chr17 I 4 C 0 s gasAcu1.chrVI 1393076 2 - 17083675 CC i gasAcu1.chrVI I 4 C 0 s oryLat2.chr24 3336235 2 - 24165179 GT i oryLat2.chr24 I 5 C 0 s danRer7.chr7 77253036 2 - 77276063 GA i danRer7.chr7 I 5 C 0 s petMar1.Contig87884 328 2 + 4648 AT i petMar1.Contig87884 C 0 C 0 e gadMor1.HE569347 2065308 364 + 2123952 T a score=-58562.000000 s mm10.chrUn_GL456394 17225 18 + 24323 GACACCACAGTGGAGCA-C s sarHar1.chrX_GL868377_random 3549 19 - 7574 TGCAGCACAGTAGGGGATC i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Ultra516 5159108 17 - 10039024 tgtcccac-gtggggct-c i ornAna1.Ultra516 C 0 I 958 s melGal1.chr8 3498477 18 + 38656188 GACATCACAATGGGGCA-C i melGal1.chr8 I 7 C 0 s galGal4.chr2 96300434 18 + 148809762 GATGTCACAATGGAGCT-C i galGal4.chr2 I 1849 C 0 s taeGut1.chr10 18904154 18 - 20806668 GACTGCAGGACGGGGCA-C i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891536 15 + 2272089 gacagggcaggggag---- i chrPic1.JH584847 I 3 C 0 s xenTro3.GL173409 317661 15 - 436458 AGTACCGGGGTGCAG---- i xenTro3.GL173409 I 3 C 0 s latCha1.AFYH01275859 1086 18 - 7455 AGCGGCTCACTGGTACC-C i latCha1.AFYH01275859 C 0 I 3 s fr3.chr17 68939 11 + 11184067 gagaggagg----ac---- i fr3.chr17 C 0 C 0 s gasAcu1.chrVI 1393078 14 - 17083675 GAGAGGAGGT-GCAC---- i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336237 15 - 24165179 AACAGTAGATCACAC---- i oryLat2.chr24 C 0 C 0 s danRer7.chr7 77253038 6 - 77276063 AACACC------------- i danRer7.chr7 C 0 C 0 s petMar1.Contig87884 330 18 + 4648 GACATCGCAAAGGGGCG-C i petMar1.Contig87884 C 0 C 0 e gadMor1.HE569347 2065308 364 + 2123952 T a score=-9523.000000 s mm10.chrUn_GL456394 17243 9 + 24323 TG-TGACAAC s sarHar1.chrX_GL868377_random 3568 9 - 7574 TT-TTGGTAG i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498495 9 + 38656188 TG-TGATGTC i melGal1.chr8 C 0 I 248 s galGal4.chr2 96300452 9 + 148809762 TG-TGACGTC i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904172 9 - 20806668 CG-GGACTAT i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891551 8 + 2272089 -g-agatggt i chrPic1.JH584847 C 0 I 12 s xenTro3.GL173409 317676 9 - 436458 TG-TGTCAGT i xenTro3.GL173409 C 0 C 0 s latCha1.AFYH01275859 1107 6 - 7455 GG-TGAC--- i latCha1.AFYH01275859 I 3 C 0 s fr3.chr17 68950 9 + 11184067 cg-ggccggc i fr3.chr17 C 0 I 3 s gasAcu1.chrVI 1393092 10 - 17083675 TGTGACCGAC i gasAcu1.chrVI C 0 I 3 s oryLat2.chr24 3336252 9 - 24165179 TG-TAGTAAC i oryLat2.chr24 C 0 I 3 s petMar1.Contig87884 348 9 + 4648 TC-TGACATC i petMar1.Contig87884 C 0 C 0 e danRer7.chr7 77253044 0 - 77276063 C e gadMor1.HE569347 2065308 364 + 2123952 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-10555.000000 s mm10.chrUn_GL456394 17252 9 + 24323 AAATTTGAA s sarHar1.chrX_GL868377_random 3577 9 - 7574 AAGGGGGGc i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96300461 8 + 148809762 -ACGTCCTT i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904181 9 - 20806668 AGCATAGGG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891571 9 + 2272089 TGTAGAGTG i chrPic1.JH584847 I 12 C 0 s xenTro3.GL173409 317685 9 - 436458 ACTGGGGTA i xenTro3.GL173409 C 0 C 0 s latCha1.AFYH01275859 1113 9 - 7455 TGGAGGGGG i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 68962 8 + 11184067 -gagcagga i fr3.chr17 I 3 I 1 s gasAcu1.chrVI 1393105 8 - 17083675 -GAGTAGGT i gasAcu1.chrVI I 3 I 1 s oryLat2.chr24 3336264 8 - 24165179 -AGATCACA i oryLat2.chr24 I 3 I 1 s petMar1.Contig87884 357 9 + 4648 ACAATGGGG i petMar1.Contig87884 C 0 C 0 e danRer7.chr7 77253044 0 - 77276063 C e melGal1.chr8 3498504 248 + 38656188 I e gadMor1.HE569347 2065308 364 + 2123952 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-205062.000000 s mm10.chrUn_GL456394 17261 94 + 24323 CACCGTGACAGC-ACAGTACA------GCACTGTGACAGTAGAGTGGAGCACTTTGACAGGAC-----------------AAT----------------GGAAC----AGTGTGACAATATAGAGGAG-AACTGTAAAA s sarHar1.chrX_GL868377_random 3586 111 - 7574 caagggaacagc-acagtaAG------GGGTATTTAGGTTAAATGGGGGCCAAGAAGCAGCAC-----------------AGTAGGTGGTTTTTAGGTAGAAGG----AGGGCCAAGGTGCAGAAGGGCAAAGGGAACA i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96300469 94 + 148809762 CTCTGTGACGTC-ACAATTTT------GCATTGTGATTTCATAATCCTTCCCGGTGACATCAC-----------------AGT----------------GGAGC----ATTGTGATTCCTTACTGGGG-CTCTGTGACG i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904190 93 - 20806668 CACCGGGAC--------TATTGGAGGGGCACCGGGACTATAGGATGGGGCACCGGGACTATAG-----------------CAT----------------AGGGC----ACCGGGACTGCAGGACGGGG-CACCGGGACT i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891580 73 + 2272089 AAGCAGGATGAAGAGAGTGTGAGGGAGGTAGAGGGTTAGAGtaaacagcca-------atcag-----------------cat----------------aTGGC----AGAGAAAGT---------------------- i chrPic1.JH584847 C 0 T 891 s xenTro3.GL173409 317694 94 - 436458 CAGTGTGTCAGT-ACTGGGGT------ACAGTGTGTCAGTACTGGAGTACAATGTGTCAGTAC-----------------TGG----------------GGTAC----AGTGTGTCAGTACTGGGGTA-CAGTGTGTGA i xenTro3.GL173409 C 0 I 498 s latCha1.AFYH01275859 1122 89 - 7455 AACTGCAGCGGC-Tcactggt------gccccctagtggtggGATAAGGAACTGCAATGGCTA-----------------ACT----------------GGTGG----CCCCTGATGGCAGGAAGGGG-AACTG----- i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 68971 91 + 11184067 ---cgggccggc-ggagagca------ggaccgggccatcggagaggaggaccgggccggcgg-----------------aga----------------ggagg----accgggccatcggagaggag-gaccgggccg i fr3.chr17 I 1 I 1 s gasAcu1.chrVI 1393114 94 - 17083675 ---CACTGTGAC-TGAGAGGA------GGTGCATTGTGACAGAGAGGAGGTGCATTGTGACAG-----------------AGA----------------GGAGAT-GCACTGTGACAATGAGGAGGTG-CACTGTGACA i gasAcu1.chrVI I 1 I 1 s oryLat2.chr24 3336273 112 - 24165179 ---AGTGGTAAC-AGTAAATC------ACACTGTAGTAACAGTAGAATACTCAGTGGTAACAGTTGATCACACCATGGTAACA----------------GTAGATCACACCGTGGTAGCAGTAGATCC-CACAGTGGTA i oryLat2.chr24 I 1 I 1 s gadMor1.HE568198 31174 61 + 246062 -----ccccGCC-ACAGACCT------GAACCAGGCCA-------------------TGACGG-----------------AGG----------------TCAGGGAGCACTACGA--------------GACCATGATC i gadMor1.HE568198 n 364 I 1 s danRer7.chr7 77253044 19 - 77276063 --------------------------------------------------------------------------------AGT----------------GTAAA----CCTATGA--------------------AACG i danRer7.chr7 C 0 I 1 s petMar1.Contig87884 366 73 + 4648 ----------------------------CTCTCTGACATCACAATGGGCCACTCTGACATCAC-----------------AAT----------------GGGGC----GCTCTGACATCACAATGGGG-AGCTCTGACA i petMar1.Contig87884 C 0 C 0 e melGal1.chr8 3498504 248 + 38656188 I e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-405.000000 s mm10.chrUn_GL456394 17355 1 + 24323 C s sarHar1.chrX_GL868377_random 3697 1 - 7574 G i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96300563 1 + 148809762 T i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904283 1 - 20806668 T i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 890762 1 + 2272089 C i chrPic1.JH584847 T 891 I 19 s petMar1.Contig87884 439 1 + 4648 T i petMar1.Contig87884 C 0 C 0 e danRer7.chr7 77253063 1 - 77276063 I e melGal1.chr8 3498504 248 + 38656188 I e gadMor1.HE568198 31235 1 + 246062 I e latCha1.AFYH01275859 1211 0 - 7455 C e fr3.chr17 69062 1 + 11184067 I e gasAcu1.chrVI 1393208 1 - 17083675 I e xenTro3.GL173409 317788 498 - 436458 I e oryLat2.chr24 3336385 1 - 24165179 I e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-35946.000000 s mm10.chrUn_GL456394 17356 31 + 24323 CACAGTGGAGCACTGTGACA--ATACTGTGGAG s sarHar1.chrX_GL868377_random 3698 31 - 7574 CACAGTAGAAGGCTTTTTGC--AGAATGTGGAC i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498752 31 + 38656188 CACAGTAGGGCTCTGTGACG--TTACAATGGGG i melGal1.chr8 I 248 C 0 s galGal4.chr2 96300564 31 + 148809762 CACAATGGGGCTCTGCGACA--TCACAGTGGGG i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904284 31 - 20806668 CAGGATGGGGCACCGGGACT--TTAGGATGGGG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 890782 31 + 2272089 CAGCTTATGGTGCTGTGCCA--CAGCGAGGGCA i chrPic1.JH584847 I 19 C 0 s xenTro3.GL173416 398061 31 + 427269 TACTGTGGGGCCCAATGATA--TTGCCGTGGGG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1211 29 - 7455 --CAGTGGCTCACTGGTGCC--CCCTTGTAGCG i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 69063 32 + 11184067 cagagaggaggaccgggccatcagagaggagg- i fr3.chr17 I 1 I 18 s gasAcu1.chrVI 1393209 30 - 17083675 AGATGAGGTGCACTGTTTCA--GAAGAGGTGC- i gasAcu1.chrVI I 1 I 26 s oryLat2.chr24 3336386 30 - 24165179 CAGTAGATTACACTGTAGTA--ACAGTAGATC- i oryLat2.chr24 I 1 I 31 s gadMor1.HE568198 31236 23 + 246062 CCAAGAACCGCA-------A--GGAGCTGGAG- i gadMor1.HE568198 I 1 I 18 s danRer7.chr7 77253064 30 - 77276063 CAGTGTAAACCTCTGAAACA--CGAGTGTAAA- i danRer7.chr7 I 1 I 8 s petMar1.Contig87884 440 31 + 4648 CGCAATGGGGCGCTCTGACA--TCGCAATGGGG i petMar1.Contig87884 C 0 I 211 e ornAna1.Ultra516 5159125 958 - 10039024 I a score=781.000000 s mm10.chrUn_GL456394 17387 1 + 24323 C s sarHar1.chrX_GL868377_random 3729 1 - 7574 C i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96300595 1 + 148809762 T i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904315 1 - 20806668 C i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 890813 1 + 2272089 C i chrPic1.JH584847 C 0 I 4 s xenTro3.GL173416 398092 1 + 427269 C i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1240 1 - 7455 T i latCha1.AFYH01275859 C 0 C 0 e danRer7.chr7 77253094 8 - 77276063 I e melGal1.chr8 3498783 0 + 38656188 C e gadMor1.HE568198 31259 18 + 246062 I e petMar1.Contig87884 471 211 + 4648 I e fr3.chr17 69095 18 + 11184067 I e gasAcu1.chrVI 1393239 26 - 17083675 I e oryLat2.chr24 3336416 31 - 24165179 I e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-10395.000000 s mm10.chrUn_GL456394 17388 13 + 24323 ATTGTGACAGCAC s sarHar1.chrX_GL868377_random 3730 12 - 7574 agggag-cagcac i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96300596 12 + 148809762 -CTGTGATGTCAC i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904316 13 - 20806668 ACCGGGACTGCAG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 890818 13 + 2272089 CATGTGCTGCCAG i chrPic1.JH584847 I 4 C 0 s xenTro3.GL173416 398093 13 + 427269 CCAATGATATTAC i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1241 13 - 7455 AATAAGGAACTGC i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 69113 7 + 11184067 ------ccggcgg i fr3.chr17 I 18 C 0 s gasAcu1.chrVI 1393265 9 - 17083675 ----GTCCGTCAG i gasAcu1.chrVI I 26 C 0 s oryLat2.chr24 3336447 13 - 24165179 AATAGTAGAGCAC i oryLat2.chr24 I 31 C 0 s danRer7.chr11 44510556 13 + 46661319 ACCATAACAGCAC i danRer7.chr11 n 8 C 0 e melGal1.chr8 3498783 0 + 38656188 C e gadMor1.HE568198 31259 18 + 246062 I e petMar1.Contig87884 471 211 + 4648 I e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-246322.000000 s mm10.chrUn_GL456394 17401 88 + 24323 AGT--GGAACATTGTGACACCAGAGGGGAGCACTT-GGA----CACCACATGGAGTACTGGGACAATACTGTGGAGCATTG---------------------TG----ACAG--C--------ACAGTGG------------ s sarHar1.chrX_GL868377_random 3742 89 - 7574 agtagggAGCCTT---CCGCTAGAAGGGGGGCCAG-GGAGCAGCACAGTAGGTGGTCTTTAGATAAAA--GAGGGTCAAGG---------------------GA----ATAG--C--------ACAGTAG------------ i sarHar1.chrX_GL868377_random C 0 I 502 s melGal1.chr8 3498783 29 + 38656188 ---------------------------------------------------------CTCTGATGTCACAGTGTGGCTCTG---------------------TG----ACG------------------------------- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96300608 69 + 148809762 AAT--GAAACACTGTGATTCCATCATGGC------------------------GACTCTGTGACGTCACAATGGGGCTCTG---------------------TG----ACGT--C--------ACAATTT------------ i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904329 85 - 20806668 GAT--GGGGCACCGGGACTATAGCGGGGCACG----GGA----CTATGGAGGGGGCACCGGGACTGCAGGATGGGGCACCG---------------------GG----ACTG--C--------GGGACGG------------ i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 890831 115 + 2272089 GGT--GACATTTCTGCACTACCACCGGGAAGAC---ATT----CTAGTGCAATTGGGTGATGTTTTGACAATGCCTCACTGGCTTTTATCCATGCCAATTATTG----ACAT--TTTCCTGGGGTGCAAC------------ i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1254 55 - 7455 ----------------------------------------AGTGGCTCACTGGCGTCCTCTGGTGGCAGGAGGGGAAACTG---------------------CA----GCAG--C--------TAACTAG------------ i latCha1.AFYH01275859 C 0 I 13 s fr3.chr17 69120 60 + 11184067 ----------agaggaggaccgggccggcggagagcagg--------------------------------------accg---------------------gg----ccatcag--------agaggaggaccgggccg-g i fr3.chr17 C 0 C 0 s gasAcu1.chrVI 1393274 83 - 17083675 ----------AGAGTAGGTGCACTGTGACTGAGAGGAGG----TGCATTGTGACACACTGTA----------AGTTCACTG---------------------TG----ACAT--A--------GGAGGTGCACTGTGACACG i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336460 91 - 24165179 ----------ACAATAGTAACAGTAGATCACATGGTAGT----AACAGTAGATCACACGgtagtaaca--gtagatcacag---------------------tatagcacac--g--------gtagttacagtata----g i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31277 57 + 246062 -------------GTAAGACCCCTGTAGACCACTAGAGC-----------------------------------ACCACTG---------------------TA--GACCAG--T--------AGAGTACTACTGTA----G i gadMor1.HE568198 I 18 C 0 s danRer7.chr11 44510569 77 + 46661319 ----------ATTAAAAACACTTGGAAGACGATAGCAGC-----------------ACATCAAAAACAC-TTGGAACACCA---------------------TG-ACAGCAC--A--------TTAAAAACACT-TG----G i danRer7.chr11 C 0 C 0 e petMar1.Contig87884 471 211 + 4648 I e xenTro3.GL173416 398106 0 + 427269 C e ornAna1.Ultra516 5159125 958 - 10039024 I a score=1872.000000 s mm10.chrUn_GL456394 17489 9 + 24323 AACATTGTG s galGal4.chr2 96300677 9 + 148809762 TGCATTGTG i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904414 9 - 20806668 GGCACCGGG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 890946 9 + 2272089 GGCATTGTA i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1322 9 - 7455 agggagggg i latCha1.AFYH01275859 I 13 C 0 s fr3.chr17 69180 9 + 11184067 cggagagga i fr3.chr17 C 0 I 21 s gasAcu1.chrVI 1393357 9 - 17083675 AGCAGTGTA i gasAcu1.chrVI C 0 I 23 s oryLat2.chr24 3336551 9 - 24165179 tgcacagta i oryLat2.chr24 C 0 I 29 s gadMor1.HE568198 31334 9 + 246062 ACCACTAGA i gadMor1.HE568198 C 0 I 1 s danRer7.chr11 44510646 9 + 46661319 AACACCATA i danRer7.chr11 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e melGal1.chr8 3498812 0 + 38656188 C e petMar1.Contig87884 471 211 + 4648 I e xenTro3.GL173416 398106 0 + 427269 C e ornAna1.Ultra516 5159125 958 - 10039024 I a score=1093.000000 s mm10.chrUn_GL456394 17498 1 + 24323 A s galGal4.chr2 96300686 1 + 148809762 A i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904423 1 - 20806668 A i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 890955 1 + 2272089 A i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1331 1 - 7455 g i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 69210 1 + 11184067 g i fr3.chr17 I 21 C 0 s oryLat2.chr24 3336589 1 - 24165179 A i oryLat2.chr24 I 29 C 0 s danRer7.chr11 44510655 1 + 46661319 A i danRer7.chr11 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e melGal1.chr8 3498812 0 + 38656188 C e gadMor1.HE568198 31343 1 + 246062 I e petMar1.Contig87884 471 211 + 4648 I e gasAcu1.chrVI 1393366 23 - 17083675 I e xenTro3.GL173416 398106 0 + 427269 C e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-19012.000000 s mm10.chrUn_GL456394 17499 17 + 24323 CACCACAGGGGAGCACT s melGal1.chr8 3498812 15 + 38656188 --TCATAATAAGGCTCT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96300687 17 + 148809762 TTTCATAATCGGGCCCT i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904424 17 - 20806668 CTATAGGATGGGGCACC i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 890956 17 + 2272089 CAACACGATGCAGCACT i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1332 17 - 7455 agctgcaGTGGCTCACT i latCha1.AFYH01275859 C 0 I 1 s fr3.chr17 69211 17 + 11184067 gaccgggccggcagaga i fr3.chr17 C 0 C 0 s oreNil2.GL831294-1 260530 13 + 1801090 ----AGGCTGAAAGACA i oreNil2.GL831294-1 N 0 C 0 s gasAcu1.chrVI 1393389 13 - 17083675 ----AGGTGCATTGTGA i gasAcu1.chrVI I 23 C 0 s oryLat2.chr24 3336590 17 - 24165179 GATCACACTGTAGTAGC i oryLat2.chr24 C 0 C 0 s danRer7.chr11 44510656 17 + 46661319 GAGCACATTAAAACACT i danRer7.chr11 C 0 C 0 s petMar1.Contig205 26107 16 + 83855 catcacagcccaGCAG- i petMar1.Contig205 T 269 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e gadMor1.HE568198 31343 1 + 246062 I e xenTro3.GL173416 398106 0 + 427269 C e ornAna1.Ultra516 5159125 958 - 10039024 I a score=128.000000 s mm10.chrUn_GL456394 17516 4 + 24323 TGGA s proCap1.scaffold_25464 19850 4 + 25131 TGGA i proCap1.scaffold_25464 N 0 C 0 s melGal1.chr8 3498827 4 + 38656188 GTGA i melGal1.chr8 C 0 C 0 s galGal4.chr2 96300704 4 + 148809762 GTGA i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904441 4 - 20806668 GGGA i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 890973 4 + 2272089 ATGA i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1350 4 - 7455 GTGC i latCha1.AFYH01275859 I 1 C 0 s fr3.chr17 69228 4 + 11184067 ggag i fr3.chr17 C 0 I 5 s oreNil2.GL831294-1 260543 4 + 1801090 ACGA i oreNil2.GL831294-1 C 0 I 5 s gasAcu1.chrVI 1393402 4 - 17083675 CGGG i gasAcu1.chrVI C 0 I 5 s oryLat2.chr24 3336607 4 - 24165179 AGTA i oryLat2.chr24 C 0 I 5 s danRer7.chr11 44510673 4 + 46661319 TGGA i danRer7.chr11 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e gadMor1.HE568198 31343 1 + 246062 I e petMar1.Contig205 26123 0 + 83855 C e xenTro3.GL173416 398106 0 + 427269 C e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-21458.000000 s mm10.chrUn_GL456394 17520 5 + 24323 --CACCA s proCap1.scaffold_25464 19854 5 + 25131 --CTGCA i proCap1.scaffold_25464 C 0 C 0 s melGal1.chr8 3498831 5 + 38656188 --CATCA i melGal1.chr8 C 0 C 0 s galGal4.chr2 96300708 5 + 148809762 --CGTCA i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904445 1 - 20806668 --C---- i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 890977 4 + 2272089 --CATC- i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1354 5 - 7455 --CATCT i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 69237 3 + 11184067 --ggc-- i fr3.chr17 I 5 I 9 s oreNil2.GL831294-1 260552 3 + 1801090 --TGC-- i oreNil2.GL831294-1 I 5 I 1 s gasAcu1.chrVI 1393411 3 - 17083675 --CAC-- i gasAcu1.chrVI I 5 I 3 s oryLat2.chr24 3336616 3 - 24165179 --CAT-- i oryLat2.chr24 I 5 I 3 s gadMor1.HE568198 31344 3 + 246062 --CAC-- i gadMor1.HE568198 I 1 I 3 s petMar1.Contig205 26123 4 + 83855 GCCA--- i petMar1.Contig205 C 0 C 0 e danRer7.chr11 44510677 0 + 46661319 C e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e xenTro3.GL173416 398106 0 + 427269 C e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-49578.000000 s mm10.chrUn_GL456394 17525 8 + 24323 ---CATGGA----GT s proCap1.scaffold_25464 19859 8 + 25131 ---CAGCTG----AT i proCap1.scaffold_25464 C 0 C 0 s melGal1.chr8 3498836 8 + 38656188 ---TTTTGG----GC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96300713 9 + 148809762 ---CAGTGGA---GC i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904446 12 - 20806668 ---TATTGGAGGGGC i taeGut1.chr10 C 0 C 0 s xenTro3.GL173416 398106 8 + 427269 ---CGTGGG----GC i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1359 3 - 7455 ------------GGT i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 69249 5 + 11184067 ---ggagg------- i fr3.chr17 I 9 C 0 s oreNil2.GL831294-1 260556 5 + 1801090 ---GAGTG------- i oreNil2.GL831294-1 I 1 C 0 s gasAcu1.chrVI 1393417 5 - 17083675 ---GACTG------- i gasAcu1.chrVI I 3 C 0 s oryLat2.chr24 3336622 5 - 24165179 ---GGTAA------- i oryLat2.chr24 I 3 C 0 s gadMor1.HE568198 31350 5 + 246062 ---TGTAG------- i gadMor1.HE568198 I 3 C 0 s petMar1.Contig205 26127 8 + 83855 CCTGAGGG------- i petMar1.Contig205 C 0 C 0 e danRer7.chr11 44510677 0 + 46661319 C e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e chrPic1.JH584847 890981 0 + 2272089 C e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-11428.000000 s mm10.chrUn_GL456394 17533 9 + 24323 ACTGGGACA s proCap1.scaffold_25464 19867 9 + 25131 GATGGGACT i proCap1.scaffold_25464 C 0 T 40 s melGal1.chr8 3498844 9 + 38656188 TCTATCACA i melGal1.chr8 C 0 C 0 s galGal4.chr2 96300722 9 + 148809762 ATTGTGATT i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18904458 9 - 20806668 ACCGGGACT i taeGut1.chr10 C 0 C 0 s xenTro3.GL173416 398114 9 + 427269 CCAATGATA i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1362 9 - 7455 GGCGGGATG i latCha1.AFYH01275859 C 0 I 13 s fr3.chr17 69254 9 + 11184067 accgggccg i fr3.chr17 C 0 C 0 s oreNil2.GL831294-1 260561 9 + 1801090 ACAATGTAG i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393422 9 - 17083675 ACAGGGGGT i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336627 9 - 24165179 CCGTAGGTC i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31355 9 + 246062 ACCACTAAA i gadMor1.HE568198 C 0 C 0 s danRer7.chr7 77253102 9 - 77276063 ACACCAGTG i danRer7.chr7 I 8 C 0 s petMar1.Contig205 26135 9 + 83855 ACTGTGACA i petMar1.Contig205 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e chrPic1.JH584847 890981 0 + 2272089 C e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-100979.000000 s mm10.chrUn_GL456394 17542 41 + 24323 CCACA----GTTGAGCA-CAGTGACACCACAGTG-----GAGAACTGTGAC s melGal1.chr8 3498853 40 + 38656188 GTACA----AAGGGGCT-CAGTTACATCATAATG-----GGT-TCTGTGAT i melGal1.chr8 C 0 I 13 s galGal4.chr2 96300731 41 + 148809762 CCATC----ATGGGGCT-CTGTGATGTCACAATT-----GGTCTCTGTGAC i galGal4.chr2 C 0 I 43 s taeGut1.chr10 18904467 41 - 20806668 GCAGG----ACGGGGCA-CCGGGACTACAGGACG-----GGGCACCGTCAC i taeGut1.chr10 C 0 I 5068 s chrPic1.JH584847 890981 17 + 2272089 -----------------------ACAACACAGCT-----AATCAC------ i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398123 41 + 427269 TTACC----GTGGGGCC-CAATGATATTACCGTG-----GGGCCCAATGAT i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1384 33 - 7455 GCTCA----GTGGCACA-CCCTGGTGGCAGGATA-----AGGA-------- i latCha1.AFYH01275859 I 13 C 0 s fr3.chr17 69263 44 + 11184067 gcagagaggccggcgga-gaggaggaccgggccggcagagaggcc------ i fr3.chr17 C 0 C 0 s oreNil2.GL831294-1 260570 35 + 1801090 CCAAA----CTGGAAGA-AAGTGAAATCAGACTG-----AAAGCC------ i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393431 28 - 17083675 GCACT----GTGGCAGA-GAGGAGG--TGCACTG----------T------ i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336636 31 - 24165179 ACACA----GTGGTA-A-CAGTAGA-TCAAACGG-----TAG--T------ i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31364 36 + 246062 GCACC----ACTGTAGACCACTAGAGTACTACTG-----TAGACC------ i gadMor1.HE568198 C 0 C 0 s danRer7.chr7 77253111 35 - 77276063 TAAAT----CTCAGAAA-CACCAGTGTTAATATA-----TGAGAC------ i danRer7.chr7 C 0 C 0 s petMar1.Contig205 26144 41 + 83855 GTCCA----CTGGGGGA-CTGTGACAGTGCACTG-----GGGGACTGTGAC i petMar1.Contig205 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-43664.000000 s mm10.chrUn_GL456394 17583 19 + 24323 ACCACAGTGGA--------------GCACTGTG s melGal1.chr8 3498906 9 + 38656188 ----------T--------------GATCTGTG i melGal1.chr8 I 13 T 210 s galGal4.chr2 96300815 19 + 148809762 GTCACAATATT--------------ACTCTGTG i galGal4.chr2 I 43 I 21 s taeGut1.chrUn 114537712 19 - 175225315 ACCACAGTGAC--------------CGCCCGGG i taeGut1.chrUn n 5068 C 0 s chrPic1.JH584847 890998 6 + 2272089 -------------------------AATGTG-- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398164 19 + 427269 ATTGCCGTGGG--------------GCCCAATG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1417 19 - 7455 ACTGCAGTGGC--------------TCACTGGC i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 69307 19 + 11184067 ggcggagagga--------------ggaccggg i fr3.chr17 C 0 C 0 s oreNil2.GL831294-1 260605 33 + 1801090 AGCGAAGACAAACTGAGTGACGTTGAACCCAAG i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393459 19 - 17083675 GACAGAGAGGA--------------GGTGCACT i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336667 19 - 24165179 ACCAGAAGATG--------------ACACTGTA i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31400 14 + 246062 ACTAGA-------------------GCACTACT i gadMor1.HE568198 C 0 C 0 s danRer7.chr7 77253146 27 - 77276063 ACCAGTGTAAATCTCTGAA------ACACCAGT i danRer7.chr7 C 0 C 0 s petMar1.Contig205 26185 19 + 83855 AGTCCACTGGG--------------GGACTGTC i petMar1.Contig205 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-72461.000000 s mm10.chrUn_GL456394 17602 27 + 24323 ACATAAGAATGGAACAGTGT------------------GACAGCA s melGal1.chr8 3498705 27 + 38656188 TTGTCACAGTGGGATTCTGT------------------GACGTCA i melGal1.chr8 T 210 C 0 s galGal4.chr2 96300855 27 + 148809762 ATGTCGAAGTAAGGCTGTAT------------------GACTTCA i galGal4.chr2 I 21 I 107 s taeGut1.chrUn 114537731 26 - 175225315 ACATTGCCATGGAGCAGTG-------------------ACCAGCA i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891004 27 + 2272089 ATATCAGAATGTGACATAGT------------------GACATCA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398183 27 + 427269 ATATTACTGTGCGGCCCAAT------------------GATATTA i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1436 19 - 7455 ACCTCCTGATGGAGGAAGG-------------------------- i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 69326 37 + 11184067 --------ccggcggagagcaggaccgggccatcagagaggagga i fr3.chr17 C 0 I 6 s oreNil2.GL831294-1 260638 31 + 1801090 --------CTGGAGGAAAATGAAACCTGGCTA------AAGAACA i oreNil2.GL831294-1 C 0 I 9 s gasAcu1.chrVI 1393478 19 - 17083675 --------GTGACTGACAGG------------------AGGTGCA i gasAcu1.chrVI C 0 I 5 s oryLat2.chr24 3336686 37 - 24165179 --------GTAACAGTAAATCACACAGTGGTAACAGTAGATCACA i oryLat2.chr24 C 0 I 9 s gadMor1.HE568198 31414 13 + 246062 --------GTAGAT------------------------CACAACA i gadMor1.HE568198 C 0 I 4 s danRer7.chr7 77253173 8 - 77276063 --------GTAAATCT----------------------------- i danRer7.chr7 C 0 I 2240 s petMar1.Contig205 26204 27 + 83855 ACAGATTACTGGGGGACTGT------------------GACAGTC i petMar1.Contig205 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=2379.000000 s mm10.chrUn_GL456394 17629 10 + 24323 CACTGGAGAA s melGal1.chr8 3498732 10 + 38656188 CAATGGGGCT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96300989 10 + 148809762 CAGTGGAACT i galGal4.chr2 I 107 C 0 s taeGut1.chrUn 114537757 10 - 175225315 CAGTGACCAC i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891031 10 + 2272089 CAATACAGCA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398210 10 + 427269 CTGTGCGGCC i xenTro3.GL173416 C 0 C 0 s fr3.chr17 69369 10 + 11184067 cggcagagag i fr3.chr17 I 6 I 8 s oreNil2.GL831294-1 260678 10 + 1801090 TGTTGGAGAA i oreNil2.GL831294-1 I 9 I 11 s gasAcu1.chrVI 1393502 8 - 17083675 --ACAGAGAG i gasAcu1.chrVI I 5 I 8 s oryLat2.chr24 3336732 10 - 24165179 CAGTAGATTA i oryLat2.chr24 I 9 I 26 s gadMor1.HE568198 31431 10 + 246062 CTGTAGACCA i gadMor1.HE568198 I 4 I 7 s petMar1.Contig205 26231 10 + 83855 CACTGGGGGA i petMar1.Contig205 C 0 C 0 e danRer7.chr7 77253181 2240 - 77276063 I e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e latCha1.AFYH01275859 1455 0 - 7455 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-106595.000000 s mm10.chrUn_GL456394 17639 30 + 24323 CTGTGA------------------CACCACAGTGG-----------------ATCACTGT----GACAG-------- s melGal1.chr8 3498742 31 + 38656188 CTGTGAT-----------------TGTCACAGTAG-----------------GGCTCTGT----GACGT-------- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96300999 48 + 148809762 CTGACATCACAGTCTGTTCTGTGCCATCACATTGG-----------------AGCAGTGT----GATTC-------- i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537767 26 - 175225315 CCAGGA------------------CACCGCCATGG-----------------AGCAGTGA----G------------ i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891041 30 + 2272089 CTGTGA------------------CATCATGAGGA-----------------AGCACACT----AACAT-------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398220 30 + 427269 CAATGA------------------TATTACTGTGG-----------------GGCCCAAT----GATAT-------- i xenTro3.GL173416 C 0 T 272 s latCha1.AFYH01275859 1455 21 - 7455 ---GGG------------------AACTGCAATGG-----------------ATCACTG------------------ i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 69387 22 + 11184067 --------------------------ggccggcag-----------------agaggagg----accgg-------- i fr3.chr17 I 8 I 10 s oreNil2.GL831294-1 260699 22 + 1801090 --------------------------TGTTGGAAA-----------------ACAGCAAA----ACCAA-------- i oreNil2.GL831294-1 I 11 I 1 s gasAcu1.chrVI 1393518 22 - 17083675 --------------------------TTGTGACAG-----------------AGAGGAGG----TGCAT-------- i gasAcu1.chrVI I 8 I 8 s oryLat2.chr24 3336768 43 - 24165179 --------------------------TAGTAACAGTAGATCACATGTTAGTAACAGTAGATAATACTGT-------- i oryLat2.chr24 I 26 I 8 s gadMor1.HE568198 31448 21 + 246062 ---------------------------ACCTGTAG-----------------ACCACTAG----AGCAC-------- i gadMor1.HE568198 I 7 I 1 s danRer7.chr15 559978 12 - 47442429 -----------------------------------------------------CTAGAAC----ATCAC-------- i danRer7.chr15 n 2240 I 1 s petMar1.Contig205 26241 30 + 83855 --------------------------CTGTCACAG-----------------ATCACTAG----GGGACTGTCACAG i petMar1.Contig205 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-76718.000000 s mm10.chrUn_GL456394 17669 37 + 24323 TATATTGGAGCAC----TGTGACACCACA----GTGGAGCACAGG s melGal1.chr8 3498773 35 + 38656188 TACAATGGGGCTC------TGATGTCACA----GTGTGGCTCTGT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301047 37 + 148809762 CAACATGGGACTC----TGTGAATTCTCA----GTGGAATTCTGT i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537793 20 - 175225315 -------------------TGA--CCACA----GTGACCACCCGG i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891071 41 + 2272089 CACAATACAGCTAGCATGATGGTATCACA----ATCTCACACAGT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 397978 37 + 427269 TACTGTGGGGCCC----AATGATATTGCT----GTGGGGCCCAAT i xenTro3.GL173416 T 272 C 0 s latCha1.AFYH01275859 1476 22 - 7455 ------------------GTGCC-CCCTG----GTTGTGGGAGGG i latCha1.AFYH01275859 C 0 C 0 s fr3.chr17 69419 32 + 11184067 ----AGGAGG-AC----CGGGCCATCACA----GAGGAGGACCGG i fr3.chr17 I 10 C 0 s oreNil2.GL831294-1 260722 15 + 1801090 --------------------------ATG----GAAGAGAATGAA i oreNil2.GL831294-1 I 1 C 0 s gasAcu1.chrVI 1393548 31 - 17083675 ----GGGGTGCAC----TGTGACT--GTG----GCAGAGAGGAGG i gasAcu1.chrVI I 8 C 0 s oryLat2.chr24 3336819 32 - 24165179 ---TAGAGCGCAC----AGTAGTA--ACA----GTAGATCACACG i oryLat2.chr24 I 8 C 0 s gadMor1.HE568198 31470 15 + 246062 --------------------------ACT----GTAGACCACTAG i gadMor1.HE568198 I 1 C 0 s danRer7.chr15 559991 37 - 47442429 ----ATAGATCAC----AGTGACATCACACTATCTAGAACACGAT i danRer7.chr15 I 1 C 0 s petMar1.Contig205 26271 37 + 83855 ATCactgggggac----tgtcacagtcca----ctgggggactgg i petMar1.Contig205 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-32822.000000 s mm10.chrUn_GL456394 17706 34 + 24323 GACACCACAGAAGAGCACTGT--------GACACCACCGTGG s melGal1.chr8 3498808 34 + 38656188 GACGTCATAATAAGGCTCTGT--------GACATCATTTTGG i melGal1.chr8 C 0 I 50 s galGal4.chr2 96301084 33 + 148809762 GACATCACAATGGGG-TCCGT--------GAAGTCACAATGG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537813 24 - 175225315 GACATGGCCATGGAG--CAGT--------GA-------GTG- i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891112 34 + 2272089 GAAATCATAATATAGTGCTAG--------GACATTGCAAGGC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398015 34 + 427269 GATATTACTGTGGGGCCCAAT--------GATATTGCTGTGG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1498 34 - 7455 GGAACTGCAGCAGCTCACTGG--------CACCCCCTTGTGG i latCha1.AFYH01275859 C 0 I 11 s fr3.chr17 69451 31 + 11184067 GCCATCACAGAGGAGGAC-----------CGGGCCACAGTGA i fr3.chr17 C 0 C 0 s oreNil2.GL831294-1 260737 31 + 1801090 GATTTTATGAAATACGCC-----------GTGACCAAGGTGA i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393579 20 - 17083675 TGCATTGTGACGGGAG----------------------GTGC i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336851 34 - 24165179 GTAATAACAGTAGATAACATA--------TTAGTAAAAGTAG i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31485 34 + 246062 AGTACTACTGTAGACCACTAG--------AGCACTACTGTAG i gadMor1.HE568198 C 0 C 0 s danRer7.chr15 560028 42 - 47442429 GACATCACAAGGGAACATTAGAACGCGATGACATCACACTAG i danRer7.chr15 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e petMar1.Contig205 26308 0 + 83855 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-1815.000000 s mm10.chrUn_GL456394 17740 4 + 24323 AGCA s galGal4.chr2 96301117 4 + 148809762 Agca i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537837 4 - 175225315 ACCG i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891146 4 + 2272089 AATG i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398049 4 + 427269 GGCC i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1543 4 - 7455 ACTG i latCha1.AFYH01275859 I 11 C 0 s fr3.chr17 69482 4 + 11184067 AGCA i fr3.chr17 C 0 n 0 s oreNil2.GL831294-1 260768 4 + 1801090 AAGA i oreNil2.GL831294-1 C 0 I 13 s gasAcu1.chrVI 1393599 1 - 17083675 A--- i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336885 4 - 24165179 ATCA i oryLat2.chr24 C 0 I 2 s gadMor1.HE568198 31519 4 + 246062 ACCA i gadMor1.HE568198 C 0 C 0 s danRer7.chr15 560070 4 - 47442429 AACA i danRer7.chr15 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e melGal1.chr8 3498842 50 + 38656188 I e petMar1.Contig205 26308 0 + 83855 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=403.000000 s mm10.chrUn_GL456394 17744 8 + 24323 CAGTGACA s galGal4.chr2 96301121 8 + 148809762 ctgtgatt i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537841 8 - 175225315 CAGTGACC i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891150 8 + 2272089 CAATGACA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398053 8 + 427269 CAATGATA i xenTro3.GL173416 C 0 T 251 s latCha1.AFYH01275859 1547 5 - 7455 CAGTG--- i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84330 8 + 93265 CTGAAACA i fr3.HE591961 I 269 C 0 s oreNil2.GL831294-1 260785 8 + 1801090 GTGGAACA i oreNil2.GL831294-1 I 13 C 0 s gasAcu1.chrVI 1393600 8 - 17083675 CTGTGACT i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336891 8 - 24165179 CTGTAGTA i oryLat2.chr24 I 2 C 0 s gadMor1.HE568198 31523 3 + 246062 -----CAA i gadMor1.HE568198 C 0 C 0 e danRer7.chr15 560074 0 - 47442429 C e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e melGal1.chr8 3498842 50 + 38656188 I e petMar1.Contig205 26308 0 + 83855 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-13927.000000 s mm10.chrUn_GL456394 17752 16 + 24323 GCTCAGTTGAGCACTC s galGal4.chr2 96301129 16 + 148809762 ctgtaatcGAGCTCTA i galGal4.chr2 C 0 I 3 s taeGut1.chrUn 114537849 6 - 175225315 ----------GCTCAG i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891158 16 + 2272089 TCATAATGCTGCACTA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 397810 16 + 427269 TTGCCATGGGGCCCAA i xenTro3.GL173416 T 251 C 0 s latCha1.AFYH01275859 1552 16 - 7455 GCTCATTggtgccccc i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84338 16 + 93265 TCCCAAACGTGCACTG i fr3.HE591961 C 0 C 0 s oreNil2.GL831294-1 260793 16 + 1801090 AACCATAACCAGGCTG i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393608 16 - 17083675 GACAGGAGGTGCACTG i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336899 16 - 24165179 ACAGTAGATAATACTG i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31526 16 + 246062 TACCACCTGTAGACCA i gadMor1.HE568198 C 0 C 0 e danRer7.chr15 560074 0 - 47442429 C e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e melGal1.chr8 3498842 50 + 38656188 I e petMar1.Contig205 26308 0 + 83855 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-238712.000000 s mm10.chrUn_GL456394 17768 69 + 24323 ---------------------------------------------------TGTCACCACAGTGGAG---CACTATGATAACAAAGTT-----GAACACTGAGACACCACAGTGGAGCAA------TATAAgag s melGal1.chr8 3498892 65 + 38656188 ---------------------------------------------------TGTCACAATTGTGGTG---ATCTGTGTTGCATTTTTA-----ATTTTGAGTAACTTAA----GGAGGAA------TGCAAAAA i melGal1.chr8 I 50 C 0 s galGal4.chr2 96301148 66 + 148809762 ---------------------------------------------------CGTCACA---GTGATG---CATTGTGTTTCCATAATG-----GGGCTCTGTGACGTCACAGCGGAGCTA------TGTGGCTT i galGal4.chr2 I 3 C 0 s taeGut1.chrUn 114537855 30 - 175225315 ----------------------------------------------------GACACGGCCGTGGAG---CAGTG------------------------AGTGACCGCA------------------------- i taeGut1.chrUn C 0 I 8 s chrPic1.JH584847 891174 75 + 2272089 ---------------------------------------------------TGACATCAAAATACAG---TGCTATGATATCACAATG-----TAACACAGTCATGTTACAATGCAGcactattattgttgttg i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 397826 69 + 427269 ---------------------------------------------------TGATATTGCTGTGGGG---CCCAATGATATTACTGTG-----GGGCCCAATGATATTACCGTGGGGCCC------AATGATAT i xenTro3.GL173416 C 0 I 166 s latCha1.AFYH01275859 1568 69 - 7455 ---------------------------------------------------tggtggtgggaggGGT---AACTGCAGTGGCTCACtg-----gcaacccctggtggcaggatAAGGAAC------TGCAGTGG i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84354 69 + 93265 AAACATCCCCT-TCGTGCACTGAAACCTCCCAA---------------ACGTG-----------------CACTGAAACCTCCCAAAC-----GTGCACTGAAACAT--------------------------- i fr3.HE591961 C 0 C 0 s oreNil2.GL831294-1 260809 57 + 1801090 AAACAG------------AGCGAAGTCTCGCTA---------------ACGT------------------CACTTTAACCAGGCTGAA-----AAACAGTGAATCCA--------------------------- i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393624 48 - 17083675 TGGCAG------------AGAGGAG-------------------------ATG-----------------CACTGTGGCAGAGAGGAG-----GTGCACTGTGACTG--------------------------- i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3336915 90 - 24165179 TAGTAA-----------CAGTAGAG-CACACAATAGTAACAGTAGATCACATGGTAGTAACAGTAGATACTACTGTAGTAACAGTAGA-----GAATACTTTAGTAA--------------------------- i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31542 65 + 246062 CAACACCACCTGTAGACCACTAGAGT----------------------AC--------------------TACTGTagacaacaacaccacctgtagaccacaacac--------------------------- i gadMor1.HE568198 C 0 C 0 s danRer7.chr15 560074 54 - 47442429 -----------------CAATTACATCACACAATG-------------ACAT------------------TACTCTAGAACACAATGA-----TATCATGAGAAAAT--------------------------- i danRer7.chr15 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e petMar1.Contig205 26308 0 + 83855 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-4793.000000 s mm10.chrUn_GL456394 17837 4 + 24323 caca s melGal1.chr8 3498957 4 + 38656188 TAAA i melGal1.chr8 C 0 T 119 s galGal4.chr2 96301214 4 + 148809762 CCCA i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 891249 4 + 2272089 ttca i chrPic1.JH584847 C 0 I 4 s xenTro3.GL173416 398061 4 + 427269 TACT i xenTro3.GL173416 I 166 C 0 s latCha1.AFYH01275859 1637 4 - 7455 CTCA i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84423 4 + 93265 CCCC i fr3.HE591961 C 0 C 0 s oreNil2.GL831294-1 260866 4 + 1801090 AGCT i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393672 4 - 17083675 TGAC i gasAcu1.chrVI C 0 I 6 s oryLat2.chr24 3337005 4 - 24165179 CAGT i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31607 4 + 246062 cacc i gadMor1.HE568198 C 0 I 1 s danRer7.chr15 560128 4 - 47442429 TACT i danRer7.chr15 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e taeGut1.chrUn 114537885 8 - 175225315 I e petMar1.Contig205 26308 0 + 83855 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-1209.000000 s mm10.chrUn_GL456394 17841 12 + 24323 gtggagcacggt s galGal4.chr2 96301218 12 + 148809762 ATGGGGTACATC i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537893 12 - 175225315 CCGGGATACGGC i taeGut1.chrUn I 8 C 0 s chrPic1.JH584847 891257 7 + 2272089 -----GTTTAgt i chrPic1.JH584847 I 4 C 0 s xenTro3.GL173416 398065 12 + 427269 GTGGGGCCCAAT i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1641 12 - 7455 CTGGCACCCCCT i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84427 12 + 93265 TTCGTGCACTGA i fr3.HE591961 C 0 C 0 s oreNil2.GL831294-1 260870 12 + 1801090 GAAGAGCAGAGA i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393682 12 - 17083675 GAGGTGCACTGT i gasAcu1.chrVI I 6 C 0 s oryLat2.chr24 3337009 12 - 24165179 AGAGCACACAAT i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31612 12 + 246062 gtagaccacaac i gadMor1.HE568198 I 1 C 0 s danRer7.chr15 560132 12 - 47442429 CTAGGACATGAC i danRer7.chr15 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e melGal1.chr8 3498961 119 + 38656188 T e petMar1.Contig205 26308 0 + 83855 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-105046.000000 s mm10.chrUn_GL456394 17853 35 + 24323 gatac-------------c-agagtggagc--acag----tgacagcgctgtgga s galGal4.chr2 96301230 36 + 148809762 GATTC-------------CGAAAACGGTAC--TCAG----TGACGTCACAAGGCG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537905 25 - 175225315 CAT-----------------GGAGCAGTGA--CCAG----CACAGTGA------- i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891264 16 + 2272089 --------------------atggtagtgc--ctaa----gg------------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398077 35 + 427269 GATAT-------------T-GCCGTGGGGC--CCAA----TGATATTACCGTGGG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1653 35 - 7455 CGTGG-------------T-GGGAGGGAGA--ACTG----CAACAGCTCACTGGC i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84439 35 + 93265 AACCT-------------C-CCAAACGTGC--ACTG----AAACCTCCCAAACGT i fr3.HE591961 C 0 C 0 s oreNil2.GL831294-1 260882 50 + 1801090 GGTCT--GGCTGAGTAAGA-CTGAAAGTAA--GCTGGTACAAAGTGACAAGAAGC i oreNil2.GL831294-1 C 0 I 6 s gasAcu1.chrVI 1393694 35 - 17083675 GGCAG-------------A-GAGGAGGTGC--ACCG----TGACAGAGAGGAGGT i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3337021 35 - 24165179 AGTAA-------------C-AGTAGATCAC--ACAG----TGGTAACAGTAGATT i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31624 37 + 246062 accac-------------c-cagagcccaccacctg----tagacacaacaccac i gadMor1.HE568198 C 0 I 7 s danRer7.chr15 560144 41 - 47442429 GACGTCACGCT-------C-AAAACATCAC--TCTA----GAACACAGTGACATC i danRer7.chr15 C 0 C 0 s petMar1.Contig205 26308 35 + 83855 -------------gaggga-tgactggggg--actg----gcacagatcagtggg i petMar1.Contig205 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e melGal1.chr8 3498961 119 + 38656188 T e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-12698.000000 s mm10.chrUn_GL456394 17888 22 + 24323 gcactgt---gacagcacagtggag s melGal1.chr8 3498842 22 + 38656188 GCTCTAT---CACAGTACAAAGGGG i melGal1.chr8 T 119 T 352 s galGal4.chr2 96301266 20 + 148809762 --ACTCT---GAGATTTCAAAGTGG i galGal4.chr2 C 0 I 29 s taeGut1.chrUn 114537930 25 - 175225315 CCACTGCAGGGACATGGCAATGGAA i taeGut1.chrUn C 0 C 0 s xenTro3.GL173416 398112 22 + 427269 GCCCAAT---GATATTACCGTGGGG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1688 22 - 7455 ACCCCCT---GGTGGCAGGATAAGG i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84474 22 + 93265 GCACTGA---AACATCCCCTTCGTG i fr3.HE591961 C 0 C 0 s oreNil2.GL831294-1 260938 22 + 1801090 GCAGTGA---AGACAAACTGACACG i oreNil2.GL831294-1 I 6 C 0 s gasAcu1.chrVI 1393729 22 - 17083675 GCACTGT---GACAGAGAGGAGGTG i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3337056 22 - 24165179 ACAATGT---AGTAACAGTAGATCA i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31668 22 + 246062 ccacTAG---AGCACTACTGTagac i gadMor1.HE568198 I 7 C 0 s danRer7.chr15 560185 22 - 47442429 ACAAGAG---Aacattactctagag i danRer7.chr15 C 0 I 13 s petMar1.Contig205 26343 22 + 83855 ggactgT---GACAGTCCACTGGTG i petMar1.Contig205 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e chrPic1.JH584847 891280 0 + 2272089 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-17566.000000 s mm10.chrUn_GL456394 17910 18 + 24323 cacTGTGA----------------------------------------------------------------------CAACACA----GTG s melGal1.chr8 3498512 18 + 38656188 TATTGTGA----------------------------------------------------------------------CGTCACA----GTG i melGal1.chr8 T 352 C 0 s galGal4.chr2 96301315 79 + 148809762 TGTTGCAATGG-------------GACTCTGTGTGTCGCCCGAATGGGTGCCTGTGGTGGCTGCTTGAGGCTCTTGGTCATCACAAGATAGG i galGal4.chr2 I 29 C 0 s latCha1.AFYH01275859 1710 30 - 7455 ----------------------------------------------------------AACTGCAGTGGTTCACTGGTTCCCCTG----GTG i latCha1.AFYH01275859 C 0 C 0 s petMar1.Contig205 26365 35 + 83855 GACTGTGACAGaNNNNNNNNNNCAGTCCCCCAGTG--------------------------------------------------------- i petMar1.Contig205 C 0 I 1 e oreNil2.GL831294-1 260960 0 + 1801090 C e danRer7.chr15 560207 13 - 47442429 I e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e gadMor1.HE568198 31690 0 + 246062 C e taeGut1.chrUn 114537955 0 - 175225315 C e fr3.HE591961 84496 0 + 93265 C e gasAcu1.chrVI 1393751 0 - 17083675 C e xenTro3.GL173416 398134 0 + 427269 C e oryLat2.chr24 3337078 0 - 24165179 C e chrPic1.JH584847 891280 0 + 2272089 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-50504.000000 s mm10.chrUn_GL456394 17928 3 + 24323 G-AG----------------- s melGal1.chr8 3498530 3 + 38656188 G-GC----------------- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301394 3 + 148809762 G-GC----------------- i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537955 1 - 175225315 ---C----------------- i taeGut1.chrUn C 0 C 0 s xenTro3.GL173416 398134 1 + 427269 ---C----------------- i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1740 4 - 7455 GCAG----------------- i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84496 18 + 93265 -CACTGAAACCTC--CCAAAC i fr3.HE591961 C 0 T 39 s oreNil2.GL831294-1 260960 18 + 1801090 -CACTGAAACCAG--CTTGAA i oreNil2.GL831294-1 C 0 I 2 s gasAcu1.chrVI 1393751 20 - 17083675 -CACTGTGACTGGGACAGGAG i gasAcu1.chrVI C 0 I 4 s oryLat2.chr24 3337078 17 - 24165179 -CACCGTAGTAA---CAGTAG i oryLat2.chr24 C 0 I 5 s gadMor1.HE568198 31690 17 + 246062 -cac-aacaccac--ctgtag i gadMor1.HE568198 C 0 I 12 e danRer7.chr15 560207 13 - 47442429 I e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e petMar1.Contig205 26400 1 + 83855 I e chrPic1.JH584847 891280 0 + 2272089 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-6672.000000 s mm10.chrUn_GL456394 17931 20 + 24323 AATGTGACACCATAGTGGAA s melGal1.chr8 3498533 20 + 38656188 TGTGTGACGTCACAATGGGC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301397 20 + 148809762 TCTGTGATGTCACTGTGAAA i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537956 20 - 175225315 AGTGAGTGGCCACGGTGACC i taeGut1.chrUn C 0 I 1 s xenTro3.GL173416 398135 20 + 427269 CCAATGATATTACCGTGGGG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1744 20 - 7455 GAGGGGGAACTGCAGTGGCT i latCha1.AFYH01275859 C 0 C 0 s oreNil2.GL831294-1 260980 9 + 1801090 -----------CCAGTGAAT i oreNil2.GL831294-1 I 2 I 24 s gasAcu1.chrVI 1393775 9 - 17083675 -----------ACTGTGACA i gasAcu1.chrVI I 4 I 11 s oryLat2.chr24 3337100 9 - 24165179 -----------ACTGTAGTA i oryLat2.chr24 I 5 I 1 s gadMor1.HE568198 31719 9 + 246062 -----------cctgtagac i gadMor1.HE568198 I 12 C 0 s danRer7.chr15 560220 7 - 47442429 -----------attggga-- i danRer7.chr15 I 13 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e petMar1.Contig205 26400 1 + 83855 I e fr3.HE591961 84514 39 + 93265 T e chrPic1.JH584847 891280 0 + 2272089 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=3250.000000 s mm10.chrUn_GL456394 17951 1 + 24323 C s melGal1.chr8 3498553 1 + 38656188 C i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301417 1 + 148809762 C i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537977 1 - 175225315 C i taeGut1.chrUn I 1 C 0 s xenTro3.GL173416 398155 1 + 427269 C i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1764 1 - 7455 C i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84475 1 + 93265 C i fr3.HE591961 T 39 C 0 s oreNil2.GL831294-1 261013 1 + 1801090 G i oreNil2.GL831294-1 I 24 C 0 s gasAcu1.chrVI 1393795 1 - 17083675 C i gasAcu1.chrVI I 11 C 0 s oryLat2.chr24 3337110 1 - 24165179 C i oryLat2.chr24 I 1 C 0 s gadMor1.HE568198 31728 1 + 246062 c i gadMor1.HE568198 C 0 C 0 e danRer7.chr15 560227 0 - 47442429 C e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e petMar1.Contig205 26400 1 + 83855 I e chrPic1.JH584847 891280 0 + 2272089 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=5832.000000 s mm10.chrUn_GL456394 17952 4 + 24323 ACTG s melGal1.chr8 3498554 4 + 38656188 TCTG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301418 4 + 148809762 TCTG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537978 4 - 175225315 CCCA i taeGut1.chrUn C 0 C 0 s xenTro3.GL173416 398156 4 + 427269 CCAA i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1765 4 - 7455 ACTG i latCha1.AFYH01275859 C 0 I 1 s fr3.HE591961 84476 4 + 93265 ACTG i fr3.HE591961 C 0 C 0 s oreNil2.GL831294-1 261014 4 + 1801090 GCTG i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393796 4 - 17083675 ACTG i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3337111 4 - 24165179 AGTA i oryLat2.chr24 C 0 C 0 s gadMor1.HE568198 31729 4 + 246062 acaa i gadMor1.HE568198 C 0 C 0 s danRer7.chr15 560227 4 - 47442429 gctg i danRer7.chr15 C 0 C 0 s petMar1.Contig205 26401 4 + 83855 TCTG i petMar1.Contig205 I 1 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e chrPic1.JH584847 891280 0 + 2272089 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-944.000000 s mm10.chrUn_GL456394 17956 2 + 24323 TG s melGal1.chr8 3498558 2 + 38656188 TG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301422 2 + 148809762 TG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537982 2 - 175225315 GG i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891280 1 + 2272089 -a i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1770 2 - 7455 TG i latCha1.AFYH01275859 I 1 C 0 s fr3.HE591961 84480 2 + 93265 AA i fr3.HE591961 C 0 I 11 s oreNil2.GL831294-1 261018 2 + 1801090 AA i oreNil2.GL831294-1 C 0 I 15 s gasAcu1.chrVI 1393800 2 - 17083675 TG i gasAcu1.chrVI C 0 T 944 s oryLat2.chr24 3337115 2 - 24165179 GA i oryLat2.chr24 C 0 I 21 s gadMor1.HE568198 31733 2 + 246062 ca i gadMor1.HE568198 C 0 I 32 s danRer7.chr15 560231 2 - 47442429 ga i danRer7.chr15 C 0 I 11 s petMar1.Contig205 26405 2 + 83855 TG i petMar1.Contig205 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e xenTro3.GL173416 398160 0 + 427269 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-20061.000000 s mm10.chrUn_GL456394 17958 10 + 24323 ACACACCAGT- s melGal1.chr8 3498560 10 + 38656188 ACAGCCTAAT- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301424 10 + 148809762 ACACCACAGT- i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537984 10 - 175225315 ACACCACCAT- i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891281 5 + 2272089 ccagc------ i chrPic1.JH584847 C 0 T 603 s latCha1.AFYH01275859 1772 8 - 7455 CC--CCTGGT- i latCha1.AFYH01275859 C 0 I 1 s fr3.HE591961 84493 7 + 93265 ---GTGCACT- i fr3.HE591961 I 11 I 1 s oreNil2.GL831294-1 261035 7 + 1801090 ---GCTCACT- i oreNil2.GL831294-1 I 15 I 1 s oryLat2.chr24 3337138 7 - 24165179 ---TCACACT- i oryLat2.chr24 I 21 I 3 s gadMor1.HE568198 31767 7 + 246062 ---accacct- i gadMor1.HE568198 I 32 I 3 s danRer7.chr15 560244 7 - 47442429 ---ctgcaca- i danRer7.chr15 I 11 I 3 s petMar1.Contig205 26407 6 + 83855 -----ACAGTC i petMar1.Contig205 C 0 C 0 e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e gasAcu1.chrVI 1393802 944 - 17083675 T e xenTro3.GL173416 398160 0 + 427269 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-24141.000000 s mm10.chrUn_GL456394 17968 20 + 24323 GGAGAATGG--Ga-catcatagt s melGal1.chr8 3498570 20 + 38656188 GGGTATTGT--GA-CATCACAGT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301434 20 + 148809762 GGGGTCTGT--GA-TGTCACAAT i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114537994 20 - 175225315 GGAG-CAGT--GACCAGCACAGT i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 890683 22 + 2272089 GGAGACCATAAGA-TGCCACAGC i chrPic1.JH584847 T 603 C 0 s latCha1.AFYH01275859 1781 20 - 7455 GCGGGAAGG--GG-AACTGCAGC i latCha1.AFYH01275859 I 1 C 0 s oryLat2.chr24 3337148 5 - 24165179 -------------G-----TAAC i oryLat2.chr24 I 3 I 1 s gadMor1.HE568198 31777 9 + 246062 -------------ga-ccacaac i gadMor1.HE568198 I 3 I 2 s danRer7.chr15 560254 10 - 47442429 -------------tatctccaac i danRer7.chr15 I 3 I 8 e oreNil2.GL831294-1 261042 1 + 1801090 I e sarHar1.chrX_GL868377_random 3831 502 - 7574 I e petMar1.Contig205 26413 0 + 83855 C e fr3.HE591961 84500 1 + 93265 I e gasAcu1.chrVI 1393802 944 - 17083675 T e xenTro3.GL173416 398160 0 + 427269 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-71198.000000 s mm10.chrUn_GL456394 17988 33 + 24323 ggagcactggaacacca----cagtg--gatcatgttac s sarHar1.chrX_GL868377_random 4333 33 - 7574 GGGccaagggaacagca----cagta--ggaAGGTTTGG i sarHar1.chrX_GL868377_random I 502 C 0 s melGal1.chr8 3498590 33 + 38656188 GGGGCACTGTTACAGCA----TAATG--GGCTCTGTGAC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301454 34 + 148809762 GCAGCACTGGGATTCCA----TACTG-CGGCTCTGTGAT i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538014 34 - 175225315 G-ACCACTGCAGGGACA----TGGCCATGGCACAGTGAC i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 890705 33 + 2272089 ATCCCCTCCATGTGCCA----TGCTG-CTGC-CTGGGTT i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1801 37 - 7455 GGCTCACTGGCATCCCACTGGTGGTG--GGATAAGGAAC i latCha1.AFYH01275859 C 0 C 0 s oreNil2.GL831294-1 261043 7 + 1801090 ----------------A----CAGTG-A----------- i oreNil2.GL831294-1 I 1 C 0 s oryLat2.chr24 3337154 14 - 24165179 ---------GTAGATCA----CACCG-T----------- i oryLat2.chr24 I 1 C 0 s gadMor1.HE568198 31788 19 + 246062 ----cacctgtagacca----caaca-c----------- i gadMor1.HE568198 I 2 T 374 s danRer7.chr15 560272 20 - 47442429 aacacacatgagcatgt----cag--------------- i danRer7.chr15 I 8 C 0 s petMar1.Contig205 26413 17 + 83855 -CCCCAGTGATCTGTCA----C----------------- i petMar1.Contig205 C 0 C 0 e fr3.HE591961 84500 1 + 93265 I e gasAcu1.chrVI 1393802 944 - 17083675 T e xenTro3.GL173416 398160 0 + 427269 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-42710.000000 s mm10.chrUn_GL456394 18021 11 + 24323 agca---------cagtg-ga s sarHar1.chrX_GL868377_random 4366 11 - 7574 AGTA---------GAATG-GG i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498623 11 + 38656188 ATCA---------CAATG-CG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301488 11 + 148809762 GTCA---------CAGTG-GG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538048 10 - 175225315 --CA---------GAGTGAcc i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 890738 11 + 2272089 GTCA---------TGATG-TT i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1838 16 - 7455 TGCAGCGGT----CATTG-GC i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84501 3 + 93265 -----------------A-AA i fr3.HE591961 I 1 I 3 s oreNil2.GL831294-1 261050 6 + 1801090 --------------AAAA-AG i oreNil2.GL831294-1 C 0 I 10 s oryLat2.chr24 3337168 6 - 24165179 --------------AGTA-AC i oryLat2.chr24 C 0 I 10 s danRer7.chr15 560292 2 - 47442429 -------------------tc i danRer7.chr15 C 0 I 6 s petMar1.Contig205 26430 11 + 83855 ------AGTCCCCCAGT---- i petMar1.Contig205 C 0 C 0 e gadMor1.HE568198 31807 374 + 246062 T e gasAcu1.chrVI 1393802 944 - 17083675 T e xenTro3.GL173416 398160 0 + 427269 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-42600.000000 s mm10.chrUn_GL456394 18032 8 + 24323 --gaactt--tg s sarHar1.chrX_GL868377_random 4377 8 - 7574 --GGCCAG--TG i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498634 8 + 38656188 --GCTCTG--TG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301499 8 + 148809762 --GCTCTG--TG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538058 8 - 175225315 --accctg--gg i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 890749 10 + 2272089 --GTTGTGCTCG i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1854 8 - 7455 --GCCCCT--GG i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84507 3 + 93265 ---CCC------ i fr3.HE591961 I 3 I 9 s oreNil2.GL831294-1 261066 4 + 1801090 --ACCG------ i oreNil2.GL831294-1 I 10 I 18 s oryLat2.chr24 3337184 4 - 24165179 --ACTG------ i oryLat2.chr24 I 10 C 0 s gadMor1.HE566274 1432579 4 - 3194580 --ATTG------ i gadMor1.HE566274 n 374 I 8 s danRer7.chr15 560300 4 - 47442429 --gctg------ i danRer7.chr15 I 6 I 8 s petMar1.Contig205 26441 8 + 83855 GATCTGTG---- i petMar1.Contig205 C 0 C 0 e gasAcu1.chrVI 1393802 944 - 17083675 T e xenTro3.GL173416 398160 0 + 427269 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-74282.000000 s mm10.chrUn_GL456394 18040 18 + 24323 ----------------acaacatagtg-gagcatg s sarHar1.chrX_GL868377_random 4385 18 - 7574 ----------------CTAACACGGGG-GTCTCTT i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498642 18 + 38656188 ----------------ATGTCATAATG-GGCTCTG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301507 19 + 148809762 ----------------ATCTCACAATATGGTACAC i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538066 7 - 175225315 ----------------------------gacacca i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 890759 17 + 2272089 ----------------ATGCTGCAGC--AGCGTAT i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1862 18 - 7455 ----------------TGGTGGGAAGG-GGAACTG i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84519 3 + 93265 ----------------CTG---------------- i fr3.HE591961 I 9 C 0 s oreNil2.GL831294-1 261088 3 + 1801090 ----------------CTG---------------- i oreNil2.GL831294-1 I 18 C 0 s gasAcu1.chrVI 1392858 3 - 17083675 ----------------CTG---------------- i gasAcu1.chrVI T 944 C 0 s oryLat2.chr24 3337188 3 - 24165179 ----------------TAG---------------- i oryLat2.chr24 C 0 C 0 s gadMor1.HE566274 1432591 3 - 3194580 ----------------GTG---------------- i gadMor1.HE566274 I 8 C 0 s danRer7.chr15 560312 3 - 47442429 ----------------gtg---------------- i danRer7.chr15 I 8 C 0 s petMar1.Contig205 26449 19 + 83855 ACAGTCCCCCAGTGGTCTG---------------- i petMar1.Contig205 C 0 C 0 e xenTro3.GL173416 398160 0 + 427269 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-52360.000000 s mm10.chrUn_GL456394 18058 11 + 24323 tg--acaccatc--g s sarHar1.chrX_GL868377_random 4403 12 - 7574 TGT-AAAATGTG--G i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498660 11 + 38656188 TG--ACATCACA--A i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301526 11 + 148809762 CG--CTTCCAAA--A i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538073 11 - 175225315 gg--acacCACC--A i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 890776 13 + 2272089 GG--ACACCAGCTTA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398160 11 + 427269 TG--ATATTGCC--G i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1880 8 - 7455 -----CAGCAGC--T i latCha1.AFYH01275859 C 0 I 3 s fr3.HE591961 84522 5 + 93265 --------AAAC--C i fr3.HE591961 C 0 I 6 s oreNil2.GL831294-1 261091 5 + 1801090 --------AAAC--C i oreNil2.GL831294-1 C 0 I 6 s gasAcu1.chrVI 1392861 5 - 17083675 --------TGAC--A i gasAcu1.chrVI C 0 I 6 s oryLat2.chr24 3337191 5 - 24165179 --------TAAC--A i oryLat2.chr24 C 0 I 3 s gadMor1.HE566274 1432594 5 - 3194580 --------AACC--A i gadMor1.HE566274 C 0 I 12 s danRer7.chr15 560315 5 - 47442429 --------tgtt--t i danRer7.chr15 C 0 I 6 s petMar1.Contig205 26468 11 + 83855 --TGACAGTCCC--A i petMar1.Contig205 C 0 C 0 e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Ultra516 5159125 958 - 10039024 I a score=-66384.000000 s mm10.chrUn_GL456394 18069 26 + 24323 tggagc---------a-------------ctgtgacagcactgtgga---g s sarHar1.chrX_GL868377_random 4415 21 - 7574 TCAAGG---------A------------------ACAGCACAGTAAG---G i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16638 39 + 23295 TGGAGC---------AGCTCCAGGTGATTGTGGGGCGACGCTGTAGA---A i ornAna1.Contig11639 n 958 C 0 s melGal1.chr8 3498671 26 + 38656188 TGGGGC---------T-------------CTGTGATGTCACAATGCA---G i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301537 26 + 148809762 TGGAGC---------T-------------CTGTGATGTCGCTGTAGG---G i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538084 35 - 175225315 TGGAACGGTTACTGAC-------------CAGAGTGACCACTGTAGA---G i taeGut1.chrUn C 0 I 1 s chrPic1.JH584847 890789 35 + 2272089 TGGTGCTGTGCC---A-------------CAGCGAGGGCACTTTGCATGTG i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398171 26 + 427269 TGGGGC---------C-------------CAATGATATTACTGTGCG---G i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1891 26 - 7455 TGGTGC---------A-------------CCCTGGTGGCGAGATAAG---A i latCha1.AFYH01275859 I 3 C 0 s fr3.HE591961 84533 26 + 93265 ACGTGC---------A-------------CTGAAACCTCCCAAACGT---G i fr3.HE591961 I 6 C 0 s oreNil2.GL831294-1 261102 26 + 1801090 AGTGAC---------A-------------CTGAGACCAAGCTGAAAG---A i oreNil2.GL831294-1 I 6 C 0 s gasAcu1.chrVI 1392872 22 - 17083675 AGGTGC---------A-------------CTGTGAC----AGGAGGT---G i gasAcu1.chrVI I 6 C 0 s oryLat2.chr24 3337199 26 - 24165179 GATCAC---------A-------------CAGTGGTAACAGTTAATC---A i oryLat2.chr24 I 3 C 0 s gadMor1.HE566274 1432611 26 - 3194580 GTCAAC---------A-------------AGGGGATAACAGAGTGGG---G i gadMor1.HE566274 I 12 C 0 s danRer7.chr15 560326 26 - 47442429 acttgg---------a-------------gctaaactgtgcaggaca---c i danRer7.chr15 I 6 I 17 s petMar1.Contig205 26479 26 + 83855 CAGTGG---------T-------------CTGTCACAGTCCCCCAGT---A i petMar1.Contig205 C 0 C 0 e proCap1.scaffold_25464 19876 40 + 25131 T a score=-11433.000000 s mm10.chrUn_GL456394 18095 11 + 24323 ctctgtgacag s sarHar1.chrX_GL868377_random 4436 11 - 7574 GTCtttttttA i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16677 11 + 23295 TTCTTCAGCAG i ornAna1.Contig11639 C 0 C 0 s melGal1.chr8 3498697 11 + 38656188 CTCTGTGATTG i melGal1.chr8 C 0 I 22 s galGal4.chr2 96301563 11 + 148809762 CTCCAAGATGT i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538120 11 - 175225315 CACCAGGACAC i taeGut1.chrUn I 1 C 0 s chrPic1.JH584847 890824 7 + 2272089 CTGCCAG---- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398197 11 + 427269 CCCAATGATAT i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1917 11 - 7455 AACTGCAGTGG i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84559 11 + 93265 CACTGAAACGT i fr3.HE591961 C 0 I 2 s oreNil2.GL831294-1 261128 11 + 1801090 GAGTGAAACCA i oreNil2.GL831294-1 C 0 I 2 s gasAcu1.chrVI 1392894 11 - 17083675 CACTGTGACTG i gasAcu1.chrVI C 0 I 6 s oryLat2.chr24 3337225 11 - 24165179 CACTGTAGTAA i oryLat2.chr24 C 0 I 2 s danRer7.chr15 560369 11 - 47442429 CTCTAGAACAT i danRer7.chr15 I 17 I 2 s petMar1.Contig205 26505 11 + 83855 ATCTGTGACAG i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432637 0 - 3194580 C e proCap1.scaffold_25464 19876 40 + 25131 T a score=-70785.000000 s mm10.chrUn_GL456394 18106 14 + 24323 --cacagttgagc---aca s sarHar1.chrX_GL868377_random 4447 13 - 7574 --CAAAG--GAGC--CAAG i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16688 15 + 23295 --CAGCTTTGACC--CTTG i ornAna1.Contig11639 C 0 C 0 s melGal1.chr8 3498730 15 + 38656188 --CACAATGGGGC--TCTG i melGal1.chr8 I 22 C 0 s galGal4.chr2 96301574 15 + 148809762 --CACGGTTCAGC--TCAA i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538131 17 - 175225315 --AACTGTGGAACAGTTAC i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 890831 12 + 2272089 -----GGTGACAT--TTCT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398208 14 + 427269 --TACTGTGCGGC--CCA- i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 1928 14 - 7455 --CTCACTGGTGC--CCA- i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84572 12 + 93265 --CAAACGTGCAC--T--- i fr3.HE591961 I 2 C 0 s oreNil2.GL831294-1 261141 12 + 1801090 --CTGAAGGACAC--T--- i oreNil2.GL831294-1 I 2 C 0 s gasAcu1.chrVI 1392911 12 - 17083675 --AGGAGGTGCAC--T--- i gasAcu1.chrVI I 6 C 0 s oryLat2.chr24 3337238 12 - 24165179 --GTAGATCACAC--C--- i oryLat2.chr24 I 2 C 0 s danRer7.chr15 560382 11 - 47442429 --TAACATCAGAC------ i danRer7.chr15 I 2 I 2 s petMar1.Contig205 26516 14 + 83855 TCCCCCAGTGGAC--T--- i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432637 0 - 3194580 C e proCap1.scaffold_25464 19876 40 + 25131 T a score=-45574.000000 s mm10.chrUn_GL456394 18120 12 + 24323 gtaa--------------------cagcacag----- s sarHar1.chrX_GL868377_random 4460 12 - 7574 GGAA--------------------TACCACAG----- i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16703 8 + 23295 GGA------------------------CATAC----- i ornAna1.Contig11639 C 0 C 0 s melGal1.chr8 3498745 12 + 38656188 TGAT--------------------TGTCACAG----- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301589 32 + 148809762 GGATGTCTCAAAGCGACTATGAGGTGTCGGTG----- i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538148 9 - 175225315 TGAC-----------------------CAGAG----- i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 890843 12 + 2272089 GCAC--------------------TACCACCG----- i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 1942 12 - 7455 --------------------CTGGTGGCGGTA----- i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84584 1 + 93265 -------------------------------G----- i fr3.HE591961 C 0 T 359 s oreNil2.GL831294-1 261153 1 + 1801090 -------------------------------G----- i oreNil2.GL831294-1 C 0 I 26 s gasAcu1.chrVI 1392923 1 - 17083675 -------------------------------G----- i gasAcu1.chrVI C 0 I 38 s oryLat2.chr24 3337250 1 - 24165179 -------------------------------G----- i oryLat2.chr24 C 0 I 41 s petMar1.Contig205 26530 12 + 83855 -------------------------GTCACAGTCCCC i petMar1.Contig205 C 0 C 0 e danRer7.chr15 560393 2 - 47442429 I e gadMor1.HE566274 1432637 0 - 3194580 C e xenTro3.GL173416 398222 0 + 427269 C e proCap1.scaffold_25464 19876 40 + 25131 T a score=-180109.000000 s mm10.chrUn_GL456394 18132 42 + 24323 taa-agcactgtgacaAC--------------------AAAGTGAACTC---------------TGATGTCACAG-TGG s sarHar1.chrX_GL868377_random 4472 36 - 7574 TAG-------GTGGTATT--------------------TAGGTACAAGA---------------TGGGGCCaggg-agc i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16711 27 + 23295 TAA-------GGGACTCT--------------------AGAGCAAA------------------------CACTG-TGC i ornAna1.Contig11639 C 0 C 0 s melGal1.chr8 3498757 43 + 38656188 TAG-GGCTCTGTGACGTTA-------------------CAATGGGGCTC---------------TGATGTCACAG-TGT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96301621 77 + 148809762 TGA-GGCTCTCTGTTGTTAGCGATGATCTCTGGCATTGCAACGGTGCTCCGTGTGGTGCCTGGATGATTTGATAA-TGG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538157 43 - 175225315 TGA--ccaccctggggaca-------------------ccaggcCACCA---------------CTATGGAACAGTTAC i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 890855 41 + 2272089 GGAAGACATTCTAGTG----------------------CAATTGGGTGA---------------TGTTTTGACAA-TGC i chrPic1.JH584847 C 0 I 54 s xenTro3.GL173409 318286 18 - 436458 ----------GTGTCAGTA-------------------CCGGGGCGC-------------------------------- i xenTro3.GL173409 I 498 C 0 s latCha1.AFYH01275859 1954 44 - 7455 TAA-GGAACTGCAGTGGCT-------------------CACTGGTGCCCCTGG-----------TGACTGGAGGG---- i latCha1.AFYH01275859 C 0 C 0 s oreNil2.GL831294-1 261180 13 + 1801090 AGA-CTGACTGTAA----------------------------------------------------------------- i oreNil2.GL831294-1 I 26 C 0 s gasAcu1.chrVI 1392962 13 - 17083675 TGA-CTGACAGAGA----------------------------------------------------------------- i gasAcu1.chrVI I 38 C 0 s oryLat2.chr24 3337292 13 - 24165179 TTA-GTAACAGTAG----------------------------------------------------------------- i oryLat2.chr24 I 41 C 0 s danRer7.chr15 560395 12 - 47442429 AAA-ATAATGATG------------------------------------------------------------------ i danRer7.chr15 I 2 C 0 s petMar1.Contig205 26542 29 + 83855 CAG-TGATCTGTGACAGTC-------------------CCCCAGTGATC------------------------------ i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432637 0 - 3194580 C e fr3.HE591961 84585 359 + 93265 T e proCap1.scaffold_25464 19876 40 + 25131 T a score=-136263.000000 s mm10.chrUn_GL456394 18174 46 + 24323 AACAC------------TGAGAGAG-----------------CATAGTGGAA-CACTGTGAAATAACAGT-GGAAAA s sarHar1.chrX_GL868377_random 4508 58 - 7574 agcacagtagggggtctttaCAAAG-----------------AAGGGTTGGC-CAAGGTGAAATACAATT-GGGGAT i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16738 26 + 23295 AATTT------------TTAGA--------------------------------------ACATCCGGTC-GGGATT i ornAna1.Contig11639 C 0 C 0 s melGal1.chr8 3498800 46 + 38656188 ------------GGCTCTGTGACGT-----------------CATAATAAGG-CTCTGTGACATCATTTT-GGGCTC i melGal1.chr8 C 0 T 138 s galGal4.chr2 96301698 45 + 148809762 ------------GGAACTGAGACGT-----------------CACCACGGAG-CGCTCTTATTCCATAAT--GGCTC i galGal4.chr2 C 0 I 1 s taeGut1.chrUn 114538200 46 - 175225315 ------------TGACCAGAGTGAc-----------------caccctggggacaccaggcCACCACTAT--GGAAC i taeGut1.chrUn C 0 I 1 s xenTro3.GL173409 318304 1 - 436458 -------------------------------------------A--------------------------------- i xenTro3.GL173409 C 0 C 0 s latCha1.AFYH01275859 1998 38 - 7455 --------------------GGAAC-----------------TGCAGCAGCT-CACTGGTACCCCCTGGT-GGCGGG i latCha1.AFYH01275859 C 0 C 0 s oreNil2.GL831294-1 261193 62 + 1801090 ------------GTGAAAGCAAGTTACAGAATACAGAAGAAAGACTGAAGGC-CACGG--AAACCATCCTCAGTAGC i oreNil2.GL831294-1 C 0 I 9 s gasAcu1.chrVI 1392975 45 - 17083675 ------------GGAGGTGCACTGT-----------------GACTGACAGA-GAGGA--GGTGCACTGTGACTGAC i gasAcu1.chrVI C 0 I 9 s oryLat2.chr24 3337305 37 - 24165179 ------------AGCACACAATAGT-----------------AACAGTAGAT-CA---------CACTGT-AGTAAC i oryLat2.chr24 C 0 I 8 s danRer7.chr15 560407 35 - 47442429 ---------------------CCAT-----------------CACTATAACA-CAAAA--ACCTCACACT-AGGAGA i danRer7.chr15 C 0 I 9 e gadMor1.HE566274 1432637 0 - 3194580 C e petMar1.Contig205 26571 0 + 83855 C e fr3.HE591961 84585 359 + 93265 T e chrPic1.JH584847 890896 54 + 2272089 I e proCap1.scaffold_25464 19876 40 + 25131 T a score=-29654.000000 s mm10.chrUn_GL456394 18220 20 + 24323 GTGTGGCATCATAGTGGAGC s sarHar1.chrX_GL868377_random 4566 20 - 7574 CTTTCGGTAGAAGGGCGAAC i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16764 20 + 23295 CTGGAGCCGTGTGGCAGAGC i ornAna1.Contig11639 C 0 C 0 s galGal4.chr2 96301744 20 + 148809762 CTGTGACGATTTAATGGTGT i galGal4.chr2 I 1 C 0 s taeGut1.chrUn 114538247 10 - 175225315 ---------GTTACTGAC-C i taeGut1.chrUn I 1 C 0 s xenTro3.GL173409 318305 20 - 436458 GTGTGTCAGTACCGGGGCGC i xenTro3.GL173409 C 0 C 0 s latCha1.AFYH01275859 2036 20 - 7455 AAGGGGAACTGCAGTGGCTC i latCha1.AFYH01275859 C 0 C 0 s oreNil2.GL831294-1 261264 15 + 1801090 -----AGGCTACAAGAAAGT i oreNil2.GL831294-1 I 9 I 6 s gasAcu1.chrVI 1393029 4 - 17083675 -----ATGC----------- i gasAcu1.chrVI I 9 C 0 s oryLat2.chr24 3337350 15 - 24165179 -----ATATTGTAGTAACAG i oryLat2.chr24 I 8 I 11 s danRer7.chr15 560451 15 - 47442429 -----ATGATGACATCACAC i danRer7.chr15 I 9 I 6 e melGal1.chr8 3498846 138 + 38656188 T e gadMor1.HE566274 1432637 0 - 3194580 C e petMar1.Contig205 26571 0 + 83855 C e fr3.HE591961 84585 359 + 93265 T e chrPic1.JH584847 890896 54 + 2272089 I e proCap1.scaffold_25464 19876 40 + 25131 T a score=-161064.000000 s mm10.chrUn_GL456394 18240 44 + 24323 AAGGT----------------------TACAGCACTGTGGAGGACTGTG--------------AAACCAG---AGTGGGGG--CA s sarHar1.chrX_GL868377_random 4586 44 - 7574 AAGGG----------------------AACAGCACATTAGGAGTCTTTA--------------GGTACAA---GATGGGGG--CC i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16784 47 + 23295 CCGTG----------------------GGCAACGCTGGGGAGGTTTTCC--------------AGAGCAGCGCTGTGGAAT--TT i ornAna1.Contig11639 C 0 C 0 s galGal4.chr2 96301764 44 + 148809762 ACACT----------------------GATTCCAAAGAGGAGCTCTGTG--------------ACGTCAT---AATAGGGC--TC i galGal4.chr2 C 0 I 20 s taeGut1.chrUn 114538257 45 - 175225315 AGAGT----------------------GACCACCCTGAGGA-CACCAGG--------------ACACCAC---CGTGGAACAGTT i taeGut1.chrUn C 0 I 28 s xenTro3.GL173409 318325 41 - 436458 AGTGT----------------------GTCAGTACCGGGGTGCAGTGTG--------------TCAGAAG---TGGGGTA----- i xenTro3.GL173409 C 0 I 2 s latCha1.AFYH01275859 2056 41 - 7455 ACTGG----------------------CACCccctggggtgggagggga--------------aCTGCAG---TGGCTCA----- i latCha1.AFYH01275859 C 0 C 0 s oreNil2.GL831294-1 261285 55 + 1801090 AAGCTGAAGACAAATGAAACCTTCTTGAGCGAAACAGAAGTCAAGCATA--------------AAAGCA---------------- i oreNil2.GL831294-1 I 6 C 0 s gasAcu1.chrVI 1393033 18 - 17083675 ---------------------------ACTGTGACAGGAGGT------------------------GCA---------------- i gasAcu1.chrVI C 0 C 0 s oryLat2.chr24 3337376 40 - 24165179 GTAGTAACAGTAAATCACACG------GTTGGAACAGTAGAT-----------------------CACA---------------- i oryLat2.chr24 I 11 C 0 s gadMor1.HE566274 1432637 41 - 3194580 AAGGTGACAGCAG--------------AGTGGACCAGGTGATAACAGAG--------------TGAGCC---------------- i gadMor1.HE566274 C 0 C 0 s danRer7.chr15 560472 42 - 47442429 ---------------------------ATCACTCCAGAACATGATTTTGGCCACTCCTGCTCTAGATCA---------------- i danRer7.chr15 I 6 C 0 s petMar1.Contig205 26571 41 + 83855 --TGT----------------------CTCAGTCCCCCAGTGATCTGTG--------------ACAGTCCCCCAGTGAT------ i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498846 138 + 38656188 T e fr3.HE591961 84585 359 + 93265 T e chrPic1.JH584847 890896 54 + 2272089 I e proCap1.scaffold_25464 19876 40 + 25131 T a score=-109005.000000 s mm10.chrUn_GL456394 18284 41 + 24323 CTGGGACA------------------------CCACAGTGGAG-------------------------ATTGTGACAA----------AACAGTGG--AGCA s sarHar1.chrX_GL868377_random 4630 46 - 7574 AAGGAACA------------------------ACACAGTAGGG----------------------CATCTTTTGGTAG----------AAAAAGGGCCAAGG i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16831 33 + 23295 CTAGGGCG------------------------CTCCCGTGGGA-----------------------------TTCTAG----------AGCAGCAG------ i ornAna1.Contig11639 C 0 C 0 s galGal4.chr2 96301828 33 + 148809762 CTATGATG------------------------TCGCAGTGCGG-----------------------------CTCTGA----------GATGTCAA------ i galGal4.chr2 I 20 C 0 s taeGut1.chrUn 114538330 43 - 175225315 CCAGGACA------------------------CCACCGTGGAA-----------------------------CTGTGACCCCCCTGGGGACGTGGC------ i taeGut1.chrUn I 28 C 0 s chrPic1.JH584847 890950 33 + 2272089 TTGTAACA------------------------ACACGATGCAG-----------------------------CACTAT----------GACATCAC------ i chrPic1.JH584847 I 54 C 0 s xenTro3.GL173409 318368 23 - 436458 GTGTGTCA------------------------GTACCGGGGTG-----------------------------CAGT-------------------------- i xenTro3.GL173409 I 2 n 2 s latCha1.AFYH01275859 2097 31 - 7455 --CTGGCA------------------------ccccctggggg-----------------------------tgggag----------gggaactg------ i latCha1.AFYH01275859 C 0 I 13 s oreNil2.GL831294-1 261340 19 + 1801090 CTGAAACC------------------------AGGctgaagca----------------------------------------------------------- i oreNil2.GL831294-1 C 0 I 3 s gasAcu1.chrVI 1393051 19 - 17083675 CTGTGACA------------------------GAGGAGGTGCA----------------------------------------------------------- i gasAcu1.chrVI C 0 I 1 s oryLat2.chr24 3337416 19 - 24165179 CTGTAGTA------------------------ACAGTATAGCA----------------------------------------------------------- i oryLat2.chr24 C 0 C 0 s gadMor1.HE566274 1432678 41 - 3194580 ATGTGACA------------------------ACAGAGTGGAACAGGTGATAACAGAGTGGACCA------------------------------------- i gadMor1.HE566274 C 0 C 0 s danRer7.chr15 560514 19 - 47442429 TGATGACA------------------------TCCCTCTAGAA----------------------------------------------------------- i danRer7.chr15 C 0 I 7 s petMar1.Contig205 26612 43 + 83855 CTGTGACAGTCCCCCAGTGGACTGTGATAGTCCCCCAGTGGTC----------------------------------------------------------- i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498846 138 + 38656188 T e fr3.HE591961 84585 359 + 93265 T e proCap1.scaffold_25464 19876 40 + 25131 T a score=-700.000000 s mm10.chrUn_GL456394 18325 1 + 24323 T s sarHar1.chrX_GL868377_random 4676 1 - 7574 T i sarHar1.chrX_GL868377_random C 0 C 0 s fr3.HE591961 84226 1 + 93265 T i fr3.HE591961 T 359 C 0 s oreNil2.GL831294-1 261362 1 + 1801090 a i oreNil2.GL831294-1 I 3 C 0 s oryLat2.chr24 3337435 1 - 24165179 C i oryLat2.chr24 C 0 C 0 s gadMor1.HE566274 1432719 1 - 3194580 T i gadMor1.HE566274 C 0 C 0 s danRer7.chr15 560540 1 - 47442429 G i danRer7.chr15 I 7 C 0 s petMar1.Contig205 26655 1 + 83855 T i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498846 138 + 38656188 T e taeGut1.chrUn 114538373 0 - 175225315 C e latCha1.AFYH01275859 2128 13 - 7455 I e gasAcu1.chrVI 1393070 1 - 17083675 I e xenTro3.GL173409 318391 2 - 436458 I e galGal4.chr2 96301861 0 + 148809762 C e chrPic1.JH584847 890983 0 + 2272089 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 16864 0 + 23295 C a score=845.000000 s mm10.chrUn_GL456394 18326 9 + 24323 GTGACACCA s sarHar1.chrX_GL868377_random 4677 9 - 7574 GCAGCACAA i sarHar1.chrX_GL868377_random C 0 C 0 s xenTro3.GL173416 398222 9 + 427269 ATGATATTA i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84227 9 + 93265 GAAATATCC i fr3.HE591961 C 0 C 0 s oreNil2.GL831294-1 261363 9 + 1801090 gaaactTTA i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393071 5 - 17083675 ----TGTGA i gasAcu1.chrVI I 1 C 0 s oryLat2.chr24 3337436 9 - 24165179 ACGATAGCA i oryLat2.chr24 C 0 N 0 s gadMor1.HE566274 1432720 9 - 3194580 GTGACAAGA i gadMor1.HE566274 C 0 C 0 s danRer7.chr15 560541 9 - 47442429 ATGATGACA i danRer7.chr15 C 0 C 0 s petMar1.Contig205 26656 9 + 83855 GTGACAGTC i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498846 138 + 38656188 T e taeGut1.chrUn 114538373 0 - 175225315 C e latCha1.AFYH01275859 2128 13 - 7455 I e galGal4.chr2 96301861 0 + 148809762 C e chrPic1.JH584847 890983 0 + 2272089 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 16864 0 + 23295 C a score=-76721.000000 s mm10.chrUn_GL456394 18335 11 + 24323 ---TAG------------TAGAGCAT s sarHar1.chrX_GL868377_random 4686 23 - 7574 ---CAGGTGGTTTTTAGATAGAAGGG i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16864 10 + 23295 ----AG------------TGGGGCTG i ornAna1.Contig11639 C 0 C 0 s galGal4.chr2 96301861 10 + 148809762 ----TG------------TAGGGCTG i galGal4.chr2 C 0 I 11 s taeGut1.chrUn 114538373 10 - 175225315 ----TG------------TGGGACGG i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 890983 10 + 2272089 ----AA------------CACAGCTA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398231 11 + 427269 ---CTG------------TGGGGCCC i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2141 16 - 7455 ------gtgccccc----tgggggtg i latCha1.AFYH01275859 I 13 C 0 s fr3.HE591961 84236 7 + 93265 ------------------CAGTCAT- i fr3.HE591961 C 0 I 13 s oreNil2.GL831294-1 261372 7 + 1801090 ------------------TTGAGTG- i oreNil2.GL831294-1 C 0 I 13 s gasAcu1.chrVI 1393076 7 - 17083675 ------------------CCGAGAG- i gasAcu1.chrVI C 0 I 13 s gadMor1.HE566274 1432729 7 - 3194580 ------------------AAGTCAA- i gadMor1.HE566274 C 0 I 10 s danRer7.chr15 560550 11 - 47442429 --------------TGACATGACAT- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 26665 11 + 83855 CCCCAG------------TGGAC--- i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498846 138 + 38656188 T e proCap1.scaffold_25464 19876 40 + 25131 T a score=-269302.000000 s mm10.chrUn_GL456394 18346 70 + 24323 GG-------------------------------TGACAGCACAGTGG-ATCA----------------CTCTGACAGCA---CAGTGGA--------GCATT--------GTGACAGCACAG--TGGAGTA-----ATGTGACA s sarHar1.chrX_GL868377_random 4709 81 - 7574 GGA-----------------------------CTGAGAGAACAGTAA-AGTAGG---------GGGTCTTTTGGTAGAA---GATGGGG--------GCAAG--------GGAGGACCACAGTTTGGGGTC-----TTTAGATA i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16874 71 + 23295 GGAAG---------------------------CTGAC-----------GTCCTG---------AGATTCCCGAGCAGCT---CTGTGGA--------ATCCT--------AAAGTAACACTG--TGGAATT-----CTGAGACA i ornAna1.Contig11639 C 0 C 0 s galGal4.chr2 96301882 124 + 148809762 AGATGATCTCAGGTATCACAATTTAGTTTTTTGTGGCATTTGAATGC-TCTCAG---------TGACATGTGAACGGGG---CAGTGGGGCATCACAACATGGGCTTTTTGTGACATCACAA--TGGAACT-----CTGAGACA i galGal4.chr2 I 11 C 0 s taeGut1.chrUn 114538383 61 - 175225315 GGACGGCC------------------------GTGGCA-------------CAG---------TGAC-----CACAGGGTCACCGTGGGG-------ACACTGGA-----GTGAC----CAA--CTGacc-------------- i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 890993 56 + 2272089 --------------------------------ATCACA-------------ATG---------TGAT-----ATCAGAA----TGTG----------ACATA--------GTGACATCACAA--TACAGCA-----CTGTGACA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398242 70 + 427269 A-------------------------------ATGATATT--------ACTGTG---------GGGCCCAATGATATTA---CTGTGGG--------GCCCA--------ATGATATTACTG--TGGGGCC-----CAATGATA i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2157 80 - 7455 gga-----------------------------ggggaactGCAGCGGCTCACTG---------GCACCCCCTGTTGGCA---GGAGGTG--------GAACT--------GTAGCGGCTCAC--TTGCACC-----CCCTGTTG i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84256 61 + 93265 ------------------------------------------------CCAAAC---------GTGCACTGAAACATCC---CAACCGT--------GCACT--------GAAACATCCCAG--TCATGCA-----CTGAAACA i fr3.HE591961 I 13 C 0 s oreNil2.GL831294-1 261392 61 + 1801090 ------------------------------------------------GCTGAC---------GAAGACTGAAGCCTGG---CTGAAGA--------CCAGT--------GAAA----CCAG--G-GTGCAAAAAGCTGAAATC i oreNil2.GL831294-1 I 13 C 0 s gasAcu1.chrVI 1393096 70 - 17083675 ------------------------------------------------ACCGACAGAGAGTAGGTGCACTGTGACTGAG---AGGAGGT--------GCATT--------GTGACAGAGAGG--AGGTGCA-----TTGTGACA i gasAcu1.chrVI I 13 C 0 s oryLat2.chr7 4745709 70 - 29492121 ------------------------------------------------TCTGATAGTCTAATGGTTCCCTCTGATAGTT---TGATGGT--------TCTTT--------CTGATAGTCTGA--TGGTTCC-----CTCTGATA i oryLat2.chr7 N 0 C 0 s gadMor1.HE566274 1432746 60 - 3194580 ------------------------------------------------ACAGAA---------GAAACCAGGTGATAAC---AGAGTGG--------GGAAG--------GTGACAACAGAG--TGGACCA------GGTGATA i gadMor1.HE566274 I 10 C 0 s danRer7.chr15 560561 62 - 47442429 --------------------------------------------------------GATGACATCACAATAGATCATCA---ATTAAGA--------ACATG--------ATGACATCACAC--AAACACT-----CTAGAACA i danRer7.chr15 C 0 C 0 s petMar1.Contig205 26676 70 + 83855 -------------------------------TGTCACAGT--------CCCCCA---------GTGATCTGTGACAGAT---CCCCGGG--------GGTCT--------GTCACAGTCCAC--TGGGGGA-----CTGTGACA i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498846 138 + 38656188 T e proCap1.scaffold_25464 19876 40 + 25131 T a score=-25764.000000 s mm10.chrUn_GL456394 18416 21 + 24323 TCACAGTGGAGCACTGTGACA s sarHar1.chrX_GL868377_random 4790 21 - 7574 GAAGATGGGGGCAAGGAAGCA i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16945 21 + 23295 GTGCCGAGGAGCCTTGGAGCA i ornAna1.Contig11639 C 0 C 0 s melGal1.chr8 3498708 5 + 38656188 TCACA---------------- i melGal1.chr8 T 138 C 0 s galGal4.chr2 96302006 21 + 148809762 TCACAATGGAGCACTGTGATC i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 891049 21 + 2272089 TCATGAGGAAGCACACTAACA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398312 21 + 427269 TTACTGTGCGGCCCAATGATA i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2237 21 - 7455 ACAGGAGGTGGAACTGTAGCG i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84317 21 + 93265 TCCCAGTCGTGCACTGAAACA i fr3.HE591961 C 0 I 56 s oreNil2.GL831294-1 261453 19 + 1801090 AAGCTGAAGGGCACTGAAG-- i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393166 21 - 17083675 GAGAGGAGATGCACTGTGACA i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4745779 21 - 29492121 GTTTGATGGTTCTCTCTGATA i oryLat2.chr7 C 0 C 0 s gadMor1.HE566274 1432806 20 - 3194580 ACAGAGTGAGCCA-TGTGACA i gadMor1.HE566274 C 0 C 0 s danRer7.chr15 560623 21 - 47442429 AGATTACATCACACTAGAAAA i danRer7.chr15 C 0 I 8 s petMar1.Contig205 26746 21 + 83855 GATCACTGGGGGACTGTCACA i petMar1.Contig205 C 0 C 0 e taeGut1.chrUn 114538444 0 - 175225315 C e proCap1.scaffold_25464 19876 40 + 25131 T a score=-36482.000000 s mm10.chrUn_GL456394 18437 12 + 24323 --CCACAATGGAGC s sarHar1.chrX_GL868377_random 4811 12 - 7574 --CCATAGTGGGAC i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16966 10 + 23295 --ACCCTGTGGG-- i ornAna1.Contig11639 C 0 C 0 s melGal1.chr8 3498713 7 + 38656188 -------GTGGGAT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302027 12 + 148809762 --CCATCATGGGAC i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538444 8 - 175225315 ------cctgggag i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891070 12 + 2272089 --TCACAATACAGC i chrPic1.JH584847 C 0 I 99 s xenTro3.GL173416 398333 12 + 427269 --TTACTGTGGGGC i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2258 12 - 7455 --GCTCACTGGTGT i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591906 81375 11 - 121029 --CCGCAAAGTAg- i fr3.HE591906 n 56 C 0 s oreNil2.GL831294-1 261472 5 + 1801090 -----CAAGG---- i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393187 10 - 17083675 ----ATGAGGAGGT i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4745800 12 - 29492121 --GTCTAATGGTTC i oryLat2.chr7 C 0 C 0 s petMar1.Contig205 26767 12 + 83855 GATCACTGGGGG-- i petMar1.Contig205 C 0 C 0 e danRer7.chr15 560644 8 - 47442429 I e gadMor1.HE566274 1432826 0 - 3194580 C e proCap1.scaffold_25464 19876 40 + 25131 T a score=-88754.000000 s mm10.chrUn_GL456394 18449 25 + 24323 ACTC----T--GACAGTACTGAG--------GGGCACTG s sarHar1.chrX_GL868377_random 4823 31 - 7574 ATCT----TTAGATAGAAGGGGGG----CCAGGGTGCTG i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 16976 27 + 23295 ATCC----TGGTGCAGTGCTGTG--------GAATTCTG i ornAna1.Contig11639 C 0 C 0 s melGal1.chr8 3498720 17 + 38656188 --TC----TGTGACGTCACAATG---------------- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302039 27 + 148809762 --TC----TGTGACCTCACAGTG------CGGTACACCG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538452 31 - 175225315 --ctgcagcatgaCATCGCTGCG------GTGACCACTG i taeGut1.chrUn C 0 C 0 s xenTro3.GL173416 398345 33 + 427269 --CC----AATGATATTACTGTGGGGCCCAATGATATTG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2270 25 - 7455 --CC----CCTGGTGGCAGGAGA--------GGGAACTG i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591906 81386 25 - 121029 --gt----tctgaaacaaacaaa--------aggcactC i fr3.HE591906 C 0 C 0 s oreNil2.GL831294-1 261477 22 + 1801090 ---------CTGAAGTACACCGA--------CAGCTGGC i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393197 25 - 17083675 --GC----ACTGTGACAGAGATG--------AGGTGCAC i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4745812 25 - 29492121 --CC----TCTGACATTAAGATG--------GTTCTCTC i oryLat2.chr7 C 0 C 0 s gadMor1.HE566274 1432826 23 - 3194580 --------ACAGAGTGGAACAGG--------GGACAACA i gadMor1.HE566274 C 0 C 0 s danRer7.chr15 560652 24 - 47442429 ---T----GATGACATCACACTA--------TACCACTC i danRer7.chr15 I 8 C 0 s petMar1.Contig205 26779 25 + 83855 --AC----TGTGACAGTCCACTG--------GGGGACTG i petMar1.Contig205 C 0 C 0 e chrPic1.JH584847 891082 99 + 2272089 I e proCap1.scaffold_25464 19876 40 + 25131 T a score=-98191.000000 s mm10.chrUn_GL456394 18474 25 + 24323 TGACCACAGTTG--------AGTATTGTT--ACAA s sarHar1.chrX_GL868377_random 4854 23 - 7574 T----ACAGTAG--------GGAGTTTTTCGGTAG i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 17003 27 + 23295 GAGCAGGACTGG--------GGGATTCTGGACCGG i ornAna1.Contig11639 C 0 C 0 s galGal4.chr2 96302066 6 + 148809762 CTTCCA----------------------------- i galGal4.chr2 C 0 I 5 s taeGut1.chrUn 114538483 6 - 175225315 CTCCTG----------------------------- i taeGut1.chrUn C 0 I 5 s xenTro3.GL173416 398378 2 + 427269 CT--------------------------------- i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3237 16 - 8809 ---------TGGCCGGATAAGGAAT---------- i latCha1.JH134567 n 0 C 0 s fr3.HE591906 81411 14 - 121029 ---------------------GGATCAGCATAAAG i fr3.HE591906 C 0 I 17 s oreNil2.GL831294-1 261499 14 + 1801090 ---------------------TGAATGCCAGTGAA i oreNil2.GL831294-1 C 0 I 15 s gasAcu1.chrVI 1393222 12 - 17083675 ---------------------TGTTT--CAGAAGA i gasAcu1.chrVI C 0 I 15 s oryLat2.chr7 4745837 14 - 29492121 ---------------------TGATAGTCTAATGG i oryLat2.chr7 C 0 I 15 s gadMor1.HE566274 1432849 14 - 3194580 ---------------------GAATGAGCCAATGC i gadMor1.HE566274 C 0 n 0 s danRer7.chr15 560676 14 - 47442429 ---------------------TTAAACATTGATGA i danRer7.chr15 C 0 I 16 s petMar1.Contig205 26804 4 + 83855 ---------------------TCAC---------- i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498737 0 + 38656188 C e chrPic1.JH584847 891082 99 + 2272089 I e proCap1.scaffold_25464 19876 40 + 25131 T a score=-143506.000000 s mm10.chrUn_GL456394 18499 36 + 24323 AAAGTAGA-ACACTGTGA-CACCAAAAT-GGA---------Gcagtg----c s sarHar1.chrX_GL868377_random 4877 37 - 7574 AAGGGAGG-CCAAGGAAG-TAGCATAATAGGG---------GTCTTT----A i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 17030 37 + 23295 AGCGGAGGAATTCTGGAA-CAACACTGT-GGA---------GCCCTG----G i ornAna1.Contig11639 C 0 C 0 s melGal1.chr8 3498737 31 + 38656188 ------GG-GCTCTGTGATTGTCACAGT-AGG---------GCTCTG----T i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302077 31 + 148809762 -----AGT-GCTCTGTGA-CGTCACAAT-AGG---------GCTCTG----T i galGal4.chr2 I 5 C 0 s taeGut1.chrUn 114538494 41 - 175225315 ACTGGAGT-GACCAgtactggggacact-ggg---------gctgTGACCCT i taeGut1.chrUn I 5 C 0 s chrPic1.JH584847 891181 36 + 2272089 AAAATACA-GTGCTATGA-TATCACAAT-GTA---------ACACAG----T i chrPic1.JH584847 I 99 C 0 s xenTro3.GL173416 398380 12 + 427269 --------------------------GT-GGG---------GCCCAA----T i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3253 23 - 8809 -------------TGCAG-CGGCTCTGT-GGC---------GCCCAC----- i latCha1.JH134567 C 0 C 0 s fr3.HE591906 81442 12 - 121029 -------------------------AGA-GAG----------CCAAG----C i fr3.HE591906 I 17 I 53 s oreNil2.GL831294-1 261528 13 + 1801090 -------------------------AGT-GAA---------TCCCAG----C i oreNil2.GL831294-1 I 15 I 44 s gasAcu1.chrVI 1393249 22 - 17083675 -------------------------AGA-CGAGGTGCCCTGTGTCCG----T i gasAcu1.chrVI I 15 I 69 s oryLat2.chr7 4745866 13 - 29492121 -------------------------TGA-TGG---------TTCCCT----C i oryLat2.chr7 I 15 I 47 s danRer7.chr15 560706 13 - 47442429 -------------------------tca-tga---------tgacat----c i danRer7.chr15 I 16 I 4 s petMar1.Contig205 26808 18 + 83855 ------------------AGACCACTGG-GGG---------ACTAT------ i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432863 0 - 3194580 I e proCap1.scaffold_25464 19876 40 + 25131 T a score=-39526.000000 s mm10.chrUn_GL456394 18535 20 + 24323 aacagtacagtggagcactg s sarHar1.chrX_GL868377_random 4914 20 - 7574 AGTAGAAGAAGGAGGCAACA i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig11639 17067 20 + 23295 ATCAACACTGCGGGACTCCG i ornAna1.Contig11639 C 0 n 0 s melGal1.chr8 3498768 18 + 38656188 GACGTTACAATGGGGCTC-- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302108 20 + 148809762 GACGTCCCAATACGGCTCTG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538535 15 - 175225315 GAAGTGACCCTGCGG----- i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891217 20 + 2272089 CATGTTACAATGCAGcacta i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398392 19 + 427269 GATAT-ACTGTGGGGCCCAA i xenTro3.GL173416 C 0 C 0 s fr3.HE591906 81507 8 - 121029 TATAGTGT------------ i fr3.HE591906 I 53 C 0 s oreNil2.GL831294-1 261585 8 + 1801090 AAGAGCAC------------ i oreNil2.GL831294-1 I 44 C 0 s gasAcu1.chrVI 1393340 8 - 17083675 AGGTGCAC------------ i gasAcu1.chrVI I 69 C 0 s oryLat2.chr7 4745926 8 - 29492121 GTTCCCTC------------ i oryLat2.chr7 I 47 C 0 s petMar1.Contig205 26826 20 + 83855 CACAGTCCACTGGGGGACTG i petMar1.Contig205 C 0 C 0 e danRer7.chr15 560719 4 - 47442429 I e gadMor1.HE566274 1432863 0 - 3194580 I e latCha1.JH134567 3276 0 - 8809 C e proCap1.scaffold_25464 19876 40 + 25131 T a score=-222925.000000 s mm10.chrUn_GL456394 18555 69 + 24323 tgacag---c--------------------acag-tggag---------cactgttaca---acaaagtag--------------aacacagtgacagc----actgtt---gagcactttgacag s sarHar1.chrX_GL868377_random 4934 70 - 7574 GAGTAG---C--------------------ACAGTTGGGG---------GTCTTTCAGT---GGGAGGGGG--------------ACCAAGGCAAcagc----acagta---gggggtctttaGAT i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498786 68 + 38656188 TGATGT---C--------------------ACAG-TGTGG---------CTCTGTGACG---TCATAATAA--------------GGCTCTGTGACATC----ATTTTG----GGCTCTATCACAG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302128 69 + 148809762 TGACAT---C--------------------ACAA-TGTGG---------CTCAAGAACG---TCACAAGGC--------------GACTCTGAGGTGTC----AATGTG---AGGCTCTTTGATGT i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538550 88 - 175225315 TGACCA---CTGCT---------CCTtgggacac-tgggg---------ct--gggacc---CTGCAGTGACCACTGCTCCTGGGGACACTGGAGTGACCAgtactggg----gacact------- i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891237 86 + 2272089 ttattg---ttgttgttcatCAAGTTTAgtatgg-tagtg---------cctaaggacc---agcCAAGAA-------------------tggcacccc----attgtg-ctaagcccTGCACAAA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398411 69 + 427269 TGATAT---T--------------------ACCG-TGGGG---------CCCAATGATA---TTACTGTGG--------------GGCCCAATGATATT----ACTGTG---GGGCCCAATGATAT i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3276 69 - 8809 TGGTGG---C--------------------CGGA-TAAGG---------AACTGTAGCG---GCTCAGTGG--------------CGCCCCCTGGTTGC----CGGATA---AGGAATTTCAGCGG i latCha1.JH134567 C 0 C 0 s fr3.HE591906 81515 70 - 121029 TGTTAC---A--------------------GTAG-TGCAG---------CGC-GTGTTG---TTACAGTCG--------------TACAGCGCATGTT-----ATTACAGTAGAATAGCATGTTAT i fr3.HE591906 C 0 I 33 s oreNil2.GL831294-1 261593 78 + 1801090 GGACAC---C--------------------AGGC-TGAGGGAGACCGAAAAC-AAGCTG-----ATAATCA--------------CTAAAACCAGGCTG----ATAACTGCTGAAACACATGCTGA i oreNil2.GL831294-1 C 0 I 34 s gasAcu1.chrVI 1393348 69 - 17083675 TGTGACACGA--------------------GCAG-TGTAG--------------GGGTG---TGACTGTGG--------------CAGAGAGGAGGTGC----ATTGTGACGGGAG-GTGCACTGT i gasAcu1.chrVI C 0 I 29 s oryLat2.chr7 4745934 48 - 29492121 TGATAG---T--------------------TTGA-TGGTT--------------CTCTC---TGATAGTTC--------------TCTCTGGTAGTCCG----ATGG------------------- i oryLat2.chr7 C 0 I 567 s danRer7.chr15 560723 70 - 47442429 ---tat---a--------------------ccac-tctag---------aac-atgatgacatcacactat--------------tccactctagaac-----atgatgacaacacactatattac i danRer7.chr15 I 4 I 2 s petMar1.Contig205 26846 69 + 83855 TCACAG---A--------------------TCAC-TGGGG---------GACTGTCACA---GATCACTGG--------------GGGACTGAGACAGA----TCACTG---GGGGACTGTCACAG i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432863 0 - 3194580 I e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-18476.000000 s mm10.chrUn_GL456394 18624 15 + 24323 cacagtggagcacag s sarHar1.chrX_GL868377_random 5004 15 - 7574 AGAATGGGGGCCAAG i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498854 15 + 38656188 TACAAAGGGGCTCAG i melGal1.chr8 C 0 I 23 s galGal4.chr2 96302197 15 + 148809762 AAGAGATGATCTCTG i galGal4.chr2 C 0 I 8 s taeGut1.chrUn 114538638 9 - 175225315 ------ggggctCAG i taeGut1.chrUn C 0 I 22 s chrPic1.JH584847 891323 15 + 2272089 CAGAGTAGCAGGCAG i chrPic1.JH584847 C 0 T 269 s xenTro3.GL173416 398480 15 + 427269 TACTGTGGGGCCCAA i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3345 15 - 8809 CTCAGTGGCGCCCCC i latCha1.JH134567 C 0 C 0 s fr3.HE591906 81618 15 - 121029 GACAGCGTGTTATTA i fr3.HE591906 I 33 C 0 s oreNil2.GL831294-1 261705 15 + 1801090 CAAAGTGAGACCAGG i oreNil2.GL831294-1 I 34 C 0 s gasAcu1.chrVI 1393446 15 - 17083675 GGAGGTGCACTGTGA i gasAcu1.chrVI I 29 C 0 s oryLat2.chr15 303647 15 + 30000224 CTCAGCACACTGATG i oryLat2.chr15 n 567 C 0 s danRer7.chr15 560795 10 - 47442429 -----tagaacatga i danRer7.chr15 I 2 C 0 s petMar1.Contig205 26915 15 + 83855 ATCACTGGGGGACTG i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432863 0 - 3194580 I e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-25169.000000 s mm10.chrUn_GL456394 18639 20 + 24323 tgacagcagagtgcagcact s sarHar1.chrX_GL868377_random 5019 20 - 7574 GTGCAGCACAGAAGGGGTCT i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498892 20 + 38656188 TGTCACAATTGTGGTGATCT i melGal1.chr8 I 23 C 0 s galGal4.chr2 96302220 10 + 148809762 ----------GTGGAGCTCT i galGal4.chr2 I 8 C 0 s taeGut1.chrUn 114538669 20 - 175225315 TGGGGACACTGGAGTGAcca i taeGut1.chrUn I 22 C 0 s xenTro3.GL173416 398495 20 + 427269 TGATATTGCCGTGGGGCCCA i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3360 20 - 8809 TGGTGGCCGGATAAGGAACT i latCha1.JH134567 C 0 C 0 s fr3.HE591906 81633 16 - 121029 CAGTAGTACAGCGCA----T i fr3.HE591906 C 0 C 0 s oreNil2.GL831294-1 261720 18 + 1801090 CTGCAAAGAAGTGAA--ACT i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393461 17 - 17083675 CAGAGAGGAGGTGCA---CT i gasAcu1.chrVI C 0 C 0 s oryLat2.chr15 303662 18 + 30000224 GGGTAGTTCAGCAAC--ACT i oryLat2.chr15 C 0 C 0 s danRer7.chr15 560805 20 - 47442429 tgacatcacactataccact i danRer7.chr15 C 0 C 0 s petMar1.Contig205 26930 20 + 83855 TGACAGTCCACTGGGGGACT i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432863 0 - 3194580 I e chrPic1.JH584847 891338 269 + 2272089 T e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-41718.000000 s mm10.chrUn_GL456394 18659 5 + 24323 gt----------------------aAC s sarHar1.chrX_GL868377_random 5039 8 - 7574 TT-TCG------------------TAC i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498912 26 + 38656188 GTGTTG-CATTTTTAATTTTGAGTAAC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302230 6 + 148809762 GTGTGG--------------------- i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538689 6 - 175225315 ctgctg--------------------- i taeGut1.chrUn C 0 C 0 s xenTro3.GL173416 398515 10 + 427269 ATGATA-----------------TTAC i xenTro3.GL173416 C 0 C 0 s fr3.HE591906 81649 4 - 121029 --GTTA--------------------- i fr3.HE591906 C 0 C 0 s oreNil2.GL831294-1 261738 4 + 1801090 --GTGA--------------------- i oreNil2.GL831294-1 C 0 C 0 s gasAcu1.chrVI 1393478 5 - 17083675 --GTGAC-------------------- i gasAcu1.chrVI C 0 C 0 s oryLat2.chr15 303680 4 + 30000224 --GATG--------------------- i oryLat2.chr15 C 0 C 0 s danRer7.chr15 560825 4 - 47442429 --ctta--------------------- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 26950 5 + 83855 ----------------------GTCAC i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432863 0 - 3194580 I e latCha1.JH134567 3380 0 - 8809 C e chrPic1.JH584847 891338 269 + 2272089 T e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-115786.000000 s mm10.chrUn_GL456394 18664 43 + 24323 ACTAGAGT---------GAGCATAATGACAAAAGTGTGGAACACTG--------------------TGACA----------G s sarHar1.chrX_GL868377_random 5047 42 - 7574 AATGGAGC---------TAAGGGAATAGC-ACAGTGGGTGGTCTTT--------------------AGCGa----------g i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498938 49 + 38656188 TTAAGGAG---------GAATGCAAAAATAAAAGTATA----TTTA--------------------TGTTGTTTTGTTTCTG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302236 24 + 148809762 --------------------TGCCCAAATGGGTGCA--------TG--------------------TGATG----------G i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538695 35 - 175225315 ---------------------gggacactggggctgTG--ACCCTG--------------------CGGTG----ACCACTG i taeGut1.chrUn C 0 C 0 s xenTro3.GL173416 398525 39 + 427269 TGTGGGG-------------CCCAATGATATTACTGTGGGGCCCAA--------------------TGATA----------T i xenTro3.GL173416 C 0 C 0 s latCha1.JH128489 44306 53 + 444037 AGTGGAGTGTAACTGCAGAGTGGAGTAATATGGCAGAGTATACTAG--------------------TGGTG---------TG i latCha1.JH128489 n 0 C 0 s fr3.HE591906 81653 27 - 121029 -------------------------TTACAGTAGAATAGCATGTTA--------------------TTACC----------G i fr3.HE591906 C 0 I 10 s oreNil2.GL831294-1 261742 27 + 1801090 -------------------------TAAGAGAAGTGGAAACTGGTG--------------------TGAAG----------G i oreNil2.GL831294-1 C 0 N 0 s gasAcu1.chrVI 1393483 23 - 17083675 -------------------------TGACAGGAG----GTGCACTG--------------------TGACA----------G i gasAcu1.chrVI C 0 I 8 s oryLat2.chr15 303684 44 + 30000224 ----------------------------GGGTAGTTCAGCACACTGATGGGGTAGTTCAGCAACACTGATG----------G i oryLat2.chr15 C 0 I 10 s danRer7.chr15 560829 26 - 47442429 --------------------------aacatgatgacatcatacta--------------------taaca----------c i danRer7.chr15 C 0 I 22 s petMar1.Contig205 26955 23 + 83855 -----------------------------AGATTACTGGGGGACTG--------------------TCACA----------G i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432863 0 - 3194580 I e chrPic1.JH584847 891338 269 + 2272089 T e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-101839.000000 s mm10.chrUn_GL456394 18707 47 + 24323 --CACTT-TGGAGCCCTG--TAACACCACAGTGGAGCACTGT--GACAACAGAG s sarHar1.chrX_GL868377_random 5089 49 - 7574 --aagat-gggggaaagg--aagcaCCATAGTGGGGCATCTTTAGATAGAAGAG i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498987 39 + 38656188 --CTTTC-CAGGGC--------ACACCAGCAAGCCGAGTCCGG----TACAAAG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302260 33 + 148809762 --CTGTA-TGAGGC--------TCTTTGTCATGACGA----------TATAGGG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 114538730 42 - 175225315 --CTTCC-TGGGG---------ACACTGGATTGACCAGTACTGGGGCCACTGGG i taeGut1.chrUn C 0 n 0 s xenTro3.GL173416 398564 39 + 427269 --TACTG-TGGGGCCCAA--TGATATTACTGTGGGGCCCAATGA---------- i xenTro3.GL173416 C 0 I 1 s latCha1.JH128489 44359 32 + 444037 --CAGTCATGGAGCAGAA--CATAATAAAGGTGGAG------------------ i latCha1.JH128489 C 0 C 0 s fr3.HE591906 81690 32 - 121029 --CGTGT-TATTACCGTGTTGGACAGCGTGTTATT------------------- i fr3.HE591906 I 10 C 0 s gasAcu1.chrVI 1393514 30 - 17083675 --TGCAT-TGTGACAGAG--AGGAGGTGCATTGTG------------------- i gasAcu1.chrVI I 8 C 0 s oryLat2.chr15 303738 30 + 30000224 --CACAC-TGATGGGGTA--GTTCAGCACACTGAT------------------- i oryLat2.chr15 I 10 C 0 s danRer7.chr15 560877 30 - 47442429 --cactc-tagaagatga--tgacatcacactatt------------------- i danRer7.chr15 I 22 I 10 s petMar1.Contig205 26978 41 + 83855 ACCACTG-TGGGACTGTC----ACAGACCACTGGGGGACTGTCACA-------- i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432863 0 - 3194580 I e chrPic1.JH584847 891338 269 + 2272089 T e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-303.000000 s mm10.chrUn_GL456394 18754 2 + 24323 TT s sarHar1.chrX_GL868377_random 5138 2 - 7574 GG i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3499026 1 + 38656188 -T i melGal1.chr8 C 0 I 7 s latCha1.JH128489 44391 1 + 444037 -T i latCha1.JH128489 C 0 I 1 e danRer7.chr15 560907 10 - 47442429 I e gadMor1.HE566274 1432863 0 - 3194580 I e taeGut1.chrUn 114538772 0 - 175225315 I e petMar1.Contig205 27019 0 + 83855 C e fr3.HE591906 81722 0 - 121029 C e gasAcu1.chrVI 1393544 0 - 17083675 C e xenTro3.GL173416 398603 1 + 427269 I e galGal4.chr2 96302293 0 + 148809762 C e oryLat2.chr15 303768 0 + 30000224 C e chrPic1.JH584847 891338 269 + 2272089 T e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-13222.000000 s mm10.chrUn_GL456394 18756 12 + 24323 GAACAC-----TGTATA s sarHar1.chrX_GL868377_random 5140 11 - 7574 GGCCAA-----TGTGC- i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3499034 10 + 38656188 GTCCAG-----TTTC-- i melGal1.chr8 I 7 C 0 s galGal4.chr2 96302293 10 + 148809762 GCTCTG-----TGAC-- i galGal4.chr2 C 0 C 0 s taeGut1.chr7 39145114 15 + 39844632 GCCTTGGGGAACTTT-- i taeGut1.chr7 n 0 C 0 s latCha1.JH128489 44393 7 + 444037 --------GAGTATA-- i latCha1.JH128489 I 1 C 0 s petMar1.Contig205 27019 8 + 83855 GATCAC-----TG---- i petMar1.Contig205 C 0 C 0 e danRer7.chr15 560907 10 - 47442429 I e gadMor1.HE566274 1432863 0 - 3194580 I e fr3.HE591906 81722 0 - 121029 C e gasAcu1.chrVI 1393544 0 - 17083675 C e xenTro3.GL173416 398603 1 + 427269 I e oryLat2.chr15 303768 0 + 30000224 C e chrPic1.JH584847 891338 269 + 2272089 T e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-153384.000000 s mm10.chrUn_GL456394 18768 64 + 24323 ACCACAGTAG--AGAGCATTGTcagtacagt-----agagcacc--gtgacaccacagt--g----ga---g-----cactgtgata s sarHar1.chrX_GL868377_random 5151 67 - 7574 ACCACAGTAG--GTGGT-TTTTAGATAGAAG-----AGGGGGCCAAGGGGCAGCGTAGTAGG----GA---G-----TTTTTCGGTA i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3499044 70 + 38656188 CTTACAGTGC--CAGCA-TTTTTGATGTGGA-----GGAAAGCT--CAGGACGTGTAGT--AACTCGG---GTAAACCTAAATGA-- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302303 41 + 148809762 GTCGCAGTG------------------------------GAACT--CTGACATCATAAT--G----GG---G-----CTGAGTGATG i galGal4.chr2 C 0 C 0 s taeGut1.chr7 39145129 66 + 39844632 ATCACAGCCT--TGGGC-ACTGTGACACAGC--TCTGGGGCACT--ttgacacagccct--g----gg---g-----cactttgaca i taeGut1.chr7 C 0 C 0 s chrPic1.JH584847 891069 68 + 2272089 ATCACAATACAGCTAGC-ATGATGGTATCAC--AATCTCACACA--GTGAAATCATAAT--A----TA---G-----TGCTAGGACA i chrPic1.JH584847 T 269 C 0 s xenTro3.GL173416 398604 64 + 427269 ATTACTGTGG----GGC-CCAATGATATTGC--TGTGGGGCCCA--ATGATATTACTGT--G----GG---G-----CCCAATGATA i xenTro3.GL173416 I 1 C 0 s latCha1.JH128489 44400 68 + 444037 ATTGCAGAGT--GGAGT-AATGTAGCGGAGTATAATAGTGCAGC--Ggagtaatatagc--a----ga---g-----tataataata i latCha1.JH128489 C 0 I 51 s fr3.HE591906 81722 47 - 121029 --------------------------ACAGT--AGTACAGCGCA---TGTTATTACAGT--A----GA---ACAGCGTGTTATTACA i fr3.HE591906 C 0 I 17 s gasAcu1.chrVI 1393544 47 - 17083675 --------------------------ACAGG--GG----GTGCA--CTGTGACTGTGGC--A----GAGAGGAGGTGCATTGTGACG i gasAcu1.chrVI C 0 I 27 s oryLat2.chr15 303768 44 + 30000224 --------------------------GGGGT--AGTTCAGCACA--CTTATGGGGTAGT--T----CA---GCAACAC----TGATG i oryLat2.chr15 C 0 I 34 s danRer7.chr15 560917 47 - 47442429 --------------------------acatg--atgacaacaca---ctatattactct--a----ga---acatgatgacatcaca i danRer7.chr15 I 10 I 32 s petMar1.Contig205 27027 34 + 83855 -------------------------------------GGGGACT--GTGACAGATCACT--G----GG---G-----GACTGTCACA i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432863 0 - 3194580 I e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-47576.000000 s mm10.chrUn_GL456394 18832 39 + 24323 gcacag-tggagcacagtg--------acagcatattggagcactgta s sarHar1.chrX_GL868377_random 5218 36 - 7574 GAATG---GGGGCCAAGGA--------ACAACACAGTAGGGGTCTTT- i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3499114 45 + 38656188 --AGAG-CCAAGTACAGTGTTCAAGGTATGTACTCCTATGGCTGTGTA i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302344 39 + 148809762 TCAGAA-TGGAGCATTGTG--------ATACCATAATGGGGCTCTGTG i galGal4.chr2 C 0 C 0 s taeGut1.chr7 39145195 39 + 39844632 cagccc-tggggcactttg--------acacagccctggggcacttta i taeGut1.chr7 C 0 C 0 s chrPic1.JH584847 891137 39 + 2272089 TTGCAA-GGCAATGCAATG--------ACATCATAATGCTGCACTATG i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398668 39 + 427269 TTACTG-TGGGGCCCAATG--------ATATTACTGTGGGGCCCAATG i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3380 39 - 8809 GCTCAG-TGGTGCTCCCTG--------GTGGCCGGATAAGGAACTGTA i latCha1.JH134567 C 0 C 0 s fr3.HE591906 81786 29 - 121029 TTACCG-TAGAACAGCGTG--------TTATTCCCGTG---------- i fr3.HE591906 I 17 I 12 s gasAcu1.chrVI 1393618 29 - 17083675 GCACTG-TGGCAGAGAGGA--------GATGCACTGTG---------- i gasAcu1.chrVI I 27 T 820 s oryLat2.chr15 303846 30 + 30000224 ACACTGATGGGATAGTTCA--------GCAACACTGAT---------- i oryLat2.chr15 I 34 I 19 s danRer7.chr15 560996 29 - 47442429 gaacac-aagaacatgatg--------acatcacagta---------- i danRer7.chr15 I 32 I 20 s petMar1.Contig205 27061 39 + 83855 GATCAC-TGGGGGACTGTG--------ACAGTCCATTGGGGGACTGTC i petMar1.Contig205 C 0 C 0 e gadMor1.HE566274 1432863 0 - 3194580 I e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=837.000000 s mm10.chrUn_GL456394 18871 3 + 24323 aca s sarHar1.chrX_GL868377_random 5254 2 - 7574 -TT i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3499159 3 + 38656188 TTG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302383 3 + 148809762 TCG i galGal4.chr2 C 0 C 0 s taeGut1.chr7 39145234 3 + 39844632 aca i taeGut1.chr7 C 0 C 0 s chrPic1.JH584847 891176 3 + 2272089 ACA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398707 3 + 427269 ATA i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3419 3 - 8809 GCA i latCha1.JH134567 C 0 C 0 s fr3.HE591906 81827 3 - 121029 TTA i fr3.HE591906 I 12 C 0 s gasAcu1.chrIX 215469 1 - 20249479 --A i gasAcu1.chrIX T 107 C 0 s oryLat2.chr15 303895 3 + 30000224 ATG i oryLat2.chr15 I 19 C 0 s danRer7.chr15 561045 3 - 47442429 aca i danRer7.chr15 I 20 C 0 s petMar1.Contig205 27100 3 + 83855 ACA i petMar1.Contig205 C 0 I 279 e gadMor1.HE566274 1432863 0 - 3194580 I e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-12954.000000 s mm10.chrUn_GL456394 18874 4 + 24323 cc-ac--- s sarHar1.chrX_GL868377_random 5256 4 - 7574 CT-AC--- i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3499162 5 + 38656188 TCGAC--- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302386 4 + 148809762 TC-AC--- i galGal4.chr2 C 0 C 0 s taeGut1.chr7 39145237 4 + 39844632 ca-gc--- i taeGut1.chr7 C 0 C 0 s chrPic1.JH584847 891179 4 + 2272089 TC-AA--- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398710 4 + 427269 TT-AC--- i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3422 4 - 8809 GC-CC--- i latCha1.JH134567 C 0 C 0 s fr3.HE591906 81830 4 - 121029 TT-AC--- i fr3.HE591906 C 0 C 0 s gasAcu1.chrIX 215470 4 - 20249479 CT-AC--- i gasAcu1.chrIX C 0 C 0 s oryLat2.chr15 303898 4 + 30000224 GG-GT--- i oryLat2.chr15 C 0 C 0 s danRer7.chr15 561048 4 - 47442429 tc-ac--- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27382 4 + 83855 ----CAGT i petMar1.Contig205 I 279 C 0 e gadMor1.HE566274 1432863 0 - 3194580 I e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-103857.000000 s mm10.chrUn_GL456394 18878 36 + 24323 ------------------agtggagca-ttgtgacaacaaagttgaacacattta----- s sarHar1.chrX_GL868377_random 5260 19 - 7574 ------------------AATGGAGC-----------CAAGGT-------AATAG----- i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3499167 20 + 38656188 ------------------GGTAATGTT-ACTTGCACTTA--------------------- i melGal1.chr8 C 0 T 675 s galGal4.chr2 96302390 35 + 148809762 ------------------AATGGGGCT-TTGTGACCTCAcactggggaaca-cca----- i galGal4.chr2 C 0 I 1 s taeGut1.chr7 39145241 15 + 39844632 ------------------cctggggca-ctttga-------------------------- i taeGut1.chr7 C 0 C 0 s chrPic1.JH584847 891183 36 + 2272089 ------------------AATACAGTG-CTATGATATCACAATGTAACACAGTCA----- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398714 15 + 427269 ------------------TGTGGGGCC-CAATGA-------------------------- i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3426 36 - 8809 ------------------AGTGGCACC-CCCTGGTGGCCGGATAAGGAACTGCAG----- i latCha1.JH134567 C 0 C 0 s fr3.HE591906 81834 36 - 121029 ------------------AGTAGAACA-GCGTGTTATTACAGTAGTACAGCGCGT----- i fr3.HE591906 C 0 I 1 s gasAcu1.chrIX 215474 36 - 20249479 ------------------AAAGAGACA-CACGGTGACCACAAAGAGACACACAGT----- i gasAcu1.chrIX C 0 I 2 s oryLat2.chr15 303902 36 + 30000224 ------------------AGTTCAGCA-CACTGATGGGGTAGTTCCACACACTTA----- i oryLat2.chr15 C 0 C 0 s gadMor1.HE567269 2302632 33 - 2362951 ------------------AGTGGAG----GCTGAGGGTACAAAGTCTCTCTGCTT----- i gadMor1.HE567269 n 0 I 2 s danRer7.chr15 561052 34 - 47442429 ------------------actaaatcatcaagaacatgatgacatcacacta-------- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27386 59 + 83855 TGTCAATATCTGTGTTTAAATACGGAC-CTTTATTTAGACAATCAAACCTAGGACACATA i petMar1.Contig205 C 0 C 0 e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-2841.000000 s mm10.chrUn_GL456394 18914 20 + 24323 caccacag---tggagcattatg s sarHar1.chrX_GL868377_random 5279 19 - 7574 TACCATAG----GTGGTCTTGAG i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302426 20 + 148809762 tttCAAAA---TGGAGTTCTGTG i galGal4.chr2 I 1 C 0 s taeGut1.chr7 39145256 20 + 39844632 ---cacagccctggggcactgTG i taeGut1.chr7 C 0 C 0 s chrPic1.JH584847 891219 20 + 2272089 TGTTACAA---TGCAGcactatt i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398729 20 + 427269 TATTACTG---TGGGGCCCAATG i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3462 20 - 8809 CAGCTCAG---TGGTGCTCTCTG i latCha1.JH134567 C 0 C 0 s tetNig2.chr21_random 2793631 20 - 3311323 caccacag---taGGCCCCACTG i tetNig2.chr21_random N 0 C 0 s fr3.HE591906 81871 20 - 121029 TATTACAG---TAGAACAGCGTG i fr3.HE591906 I 1 C 0 s gasAcu1.chrIX 215512 18 - 20249479 --CTACAA---AGAGACACACGG i gasAcu1.chrIX I 2 I 2 s gadMor1.HE567269 2302667 20 - 2362951 AACAATGG---TCAGCAACCATA i gadMor1.HE567269 I 2 I 22 s danRer7.chr15 561086 20 - 47442429 taccactc---tagaacatgatg i danRer7.chr15 C 0 I 10 s petMar1.Contig205 27445 20 + 83855 AATTGCAA---TCAGTACACGTG i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e oryLat2.chr15 303938 0 + 30000224 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-21262.000000 s mm10.chrUn_GL456394 18934 3 + 24323 a--------------------ca s sarHar1.chrX_GL868377_random 5298 3 - 7574 G--------------------ta i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302446 3 + 148809762 A--------------------CG i galGal4.chr2 C 0 C 0 s taeGut1.chr7 39145276 3 + 39844632 A--------------------CA i taeGut1.chr7 C 0 C 0 s chrPic1.JH584847 891239 23 + 2272089 attgttgttgttcatCAAGTTTA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398749 3 + 427269 A--------------------TA i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3482 3 - 8809 G--------------------TG i latCha1.JH134567 C 0 C 0 s tetNig2.chr21_random 2793651 3 - 3311323 --------------------CCC i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 81891 3 - 121029 --------------------TTA i fr3.HE591906 C 0 C 0 s gadMor1.HE567269 2302709 3 - 2362951 --------------------GTC i gadMor1.HE567269 I 22 C 0 s danRer7.chr15 561116 3 - 47442429 --------------------ata i danRer7.chr15 I 10 C 0 s petMar1.Contig205 27465 3 + 83855 --------------------CCA i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e gasAcu1.chrIX 215530 2 - 20249479 I e oryLat2.chr15 303938 0 + 30000224 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-39818.000000 s mm10.chrUn_GL456394 18937 19 + 24323 gaacagtg---------------gagcactgcg----------a s sarHar1.chrX_GL868377_random 5301 18 - 7574 gaaga-tg---------------ggggaaggga----------a i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302449 19 + 148809762 TCACAGTA---------------GGGCTCCGTG----------A i galGal4.chr2 C 0 I 19 s taeGut1.chr7 39145279 19 + 39844632 CAGCTTTG---------------GGGCActgtg----------a i taeGut1.chr7 C 0 n 0 s chrPic1.JH584847 891262 19 + 2272089 gtatggta---------------gtgcctaagg----------a i chrPic1.JH584847 C 0 I 19 s latCha1.JH134567 3485 19 - 8809 GCTGGATA---------------AGGAACTGCA----------G i latCha1.JH134567 C 0 C 0 s tetNig2.chr21_random 2793654 9 - 3311323 CGACAATG---------------G-------------------- i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 81894 19 - 121029 TTACAGTA---------------GAACAGCGTG----------T i fr3.HE591906 C 0 C 0 s oryLat2.chr15 303938 18 + 30000224 -TGGGGTA---------------GTTCAGCACA----------C i oryLat2.chr15 C 0 C 0 s gadMor1.HE567269 2302712 27 - 2362951 TGGGGCTA---------------G--CAGCACGAGCTCATCCCC i gadMor1.HE567269 C 0 C 0 s danRer7.chr15 561119 19 - 47442429 ccactcta---------------gaacatgctg----------a i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27468 32 + 83855 --ATTGTaNNNNNNNNNNaCCATGGACTCCGTG----------G i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e gasAcu1.chrIX 215530 2 - 20249479 I e xenTro3.GL173416 398752 0 + 427269 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-31228.000000 s mm10.chrUn_GL456394 18956 18 + 24323 caccac-------agtggagcacTG----------------- s sarHar1.chrX_GL868377_random 5319 10 - 7574 cagCAC-------AGTT------------------------- i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302487 17 + 148809762 CGTTAC-------ATTGTAATCTC------------------ i galGal4.chr2 I 19 I 11 s chrPic1.JH584847 891300 17 + 2272089 cattgt-------gctaagcccTG------------------ i chrPic1.JH584847 I 19 T 235 s latCha1.JH134567 3504 17 - 8809 CATCTC-------AGTGGTGCCCT------------------ i latCha1.JH134567 C 0 I 4 s tetNig2.chr21_random 2793663 9 - 3311323 -GTTCC-------AGCA------------------------- i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 81913 10 - 121029 TATTAC-------CGTG------------------------- i fr3.HE591906 C 0 C 0 s oryLat2.chr15 303956 10 + 30000224 TGATGG-------GGTA------------------------- i oryLat2.chr15 C 0 C 0 s gadMor1.HE567269 2302739 17 - 2362951 TGCTGCTCACAGGAGTA------------------------- i gadMor1.HE567269 C 0 C 0 s danRer7.chr15 561138 10 - 47442429 catcac-------aaaa------------------------- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27500 27 + 83855 GAATTC-------AGCG--------GCGGTGAGTGAAAGCAA i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e taeGut1.chr7 39145298 0 + 39844632 I e gasAcu1.chrIX 215530 2 - 20249479 I e xenTro3.GL173416 398752 0 + 427269 C e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-147328.000000 s mm10.chrUn_GL456394 18974 74 + 24323 TCGCACCACAA---------GTGGATCA--------------------ATGTGAGAACAAAGAGGAAC---ATTATAACACTACACTAGAG-----------CACTGTGAAAAAACA------ s sarHar1.chrX_GL868377_random 5329 64 - 7574 --------------------GCGGGTC----------------------TGTACATAGAAGAGGGGcc---aagggaacagcacagtagggg--------gtcttttTGTAGAATAT------ i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302515 40 + 148809762 TCACGTTACAAT--------GCCTTCC----------------------------------------------TGATACGTCAAATTGGGA-----------CTC------------------ i galGal4.chr2 I 11 I 1 s latCha1.JH134567 3525 70 - 8809 TGGCCTGATAAGAAACTGCAGTGGCTCAGTGGCTCCCCC-------TGATGTCCGGGTAAGGAAC--------TGCAGCGTCTCA-------------------------------------- i latCha1.JH134567 I 4 C 0 s tetNig2.chr21_random 2793672 36 - 3311323 -------------------------------ATACCATA---------------TTAGGCTCGACCAC---AACTGGCTCTTTCA-------------------------------------- i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 81923 29 - 121029 -------------------------------TTATTACA---------------GTAGA-------AC---AGCGTGTTATTACA-------------------------------------- i fr3.HE591906 C 0 C 0 s oryLat2.chr15 303966 48 + 30000224 -------------------------------GTTCCACA---ACACTGATGG-GGTAGTTCCGCACAC--TGATGGGGTAGTTCA-------------------------------------- i oryLat2.chr15 C 0 C 0 s gadMor1.HE567269 2302756 45 - 2362951 -------------------------------ACACTAGA---ACCACGCTGA-GGAACACTAGAACCC---CACAGAGTA--ACA-------------------------------------- i gadMor1.HE567269 C 0 C 0 s danRer7.chr15 561148 50 - 47442429 -------------------------------acactctag--atcatgatgacattacactagaaaacaagaacatgatg--aca-------------------------------------- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27527 90 + 83855 -----------------------------TCACGTCATTGGTGACTTGATGGAGATATGCAAGAG-GC---AATCAGATACCTTATCTGCAATGCCGCGCATCTTTCTCGTGAAACAATGCAA i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e taeGut1.chr7 39145298 0 + 39844632 I e gasAcu1.chrIX 215530 2 - 20249479 I e xenTro3.GL173416 398752 0 + 427269 C e chrPic1.JH584847 891317 235 + 2272089 T e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-16965.000000 s mm10.chrUn_GL456394 19048 13 + 24323 GTGGAGAAGTGTT s dipOrd1.scaffold_38726 9187 13 - 10940 GTAGAACAGGGCT i dipOrd1.scaffold_38726 N 0 C 0 s sarHar1.chrX_GL868377_random 5393 13 - 7574 TGGGAGGCAAGGT i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302556 3 + 148809762 GTG---------- i galGal4.chr2 I 1 C 0 s latCha1.JH134567 3595 10 - 8809 ---ATGGCGCCCT i latCha1.JH134567 C 0 I 3 s tetNig2.chr21_random 2793708 7 - 3311323 ------TCAAAAA i tetNig2.chr21_random C 0 I 29 s fr3.HE591906 81952 7 - 121029 ------GTAGAAC i fr3.HE591906 C 0 I 22 s oryLat2.chr15 304014 7 + 30000224 ------GCACACT i oryLat2.chr15 C 0 I 32 s gadMor1.HE567269 2302801 7 - 2362951 ------CTAGAAC i gadMor1.HE567269 C 0 I 3 s danRer7.chr15 561198 7 - 47442429 ------tcagact i danRer7.chr15 C 0 I 13 s petMar1.Contig205 27617 13 + 83855 GTGAAAACGGACT i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e taeGut1.chr7 39145298 0 + 39844632 I e gasAcu1.chrIX 215530 2 - 20249479 I e xenTro3.GL173416 398752 0 + 427269 C e chrPic1.JH584847 891317 235 + 2272089 T e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-5473.000000 s mm10.chrUn_GL456394 19061 4 + 24323 ACA---G s dipOrd1.scaffold_38726 9200 5 - 10940 ACAT--G i dipOrd1.scaffold_38726 C 0 C 0 s sarHar1.chrX_GL868377_random 5406 4 - 7574 gca---g i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302559 4 + 148809762 ACC---A i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909576 4 - 20806668 ACT---G i taeGut1.chr10 I 5068 C 0 s latCha1.JH134567 3608 1 - 8809 ------G i latCha1.JH134567 I 3 I 4 s tetNig2.chr21_random 2793744 4 - 3311323 CCA---G i tetNig2.chr21_random I 29 C 0 s fr3.HE591906 81981 4 - 121029 ACA---G i fr3.HE591906 I 22 C 0 s gasAcu1.chrIX 215532 4 - 20249479 ACC---A i gasAcu1.chrIX I 2 C 0 s oryLat2.chr15 304053 4 + 30000224 TCA---G i oryLat2.chr15 I 32 C 0 s danRer7.chr15 561218 4 - 47442429 aca---t i danRer7.chr15 I 13 C 0 s petMar1.Contig205 27630 4 + 83855 ---CTTG i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e gadMor1.HE567269 2302808 3 - 2362951 I e xenTro3.GL173416 398752 0 + 427269 C e chrPic1.JH584847 891317 235 + 2272089 T e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-10538.000000 s mm10.chrUn_GL456394 19065 5 + 24323 ----CACAG---- s dipOrd1.scaffold_38726 9205 5 - 10940 ----CACAA---- i dipOrd1.scaffold_38726 C 0 C 0 s sarHar1.chrX_GL868377_random 5410 5 - 7574 ----cacag---- i sarHar1.chrX_GL868377_random C 0 I 10 s galGal4.chr2 96302563 5 + 148809762 ----CACAA---- i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909580 5 - 20806668 ----CAGGA---- i taeGut1.chr10 C 0 C 0 s xenTro3.GL173416 398752 5 + 427269 ----TACTG---- i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3613 4 - 8809 ----CGGA----- i latCha1.JH134567 I 4 C 0 s tetNig2.chr21_random 2793748 5 - 3311323 ----CAAAA---- i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 81985 5 - 121029 ----TAGAA---- i fr3.HE591906 C 0 C 0 s gasAcu1.chrIX 215536 5 - 20249479 ----CAAAG---- i gasAcu1.chrIX C 0 C 0 s oryLat2.chr15 304057 5 + 30000224 ----CACAC---- i oryLat2.chr15 C 0 I 13 s gadMor1.HE567269 2302811 4 - 2362951 -----ACAG---- i gadMor1.HE567269 I 3 C 0 s danRer7.chr15 561222 5 - 47442429 ----gataa---- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27634 13 + 83855 CACCCACGTGATG i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e chrPic1.JH584847 891317 235 + 2272089 T e proCap1.scaffold_25464 19876 40 + 25131 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-26676.000000 s mm10.chrUn_GL456394 19070 14 + 24323 TGGAG-----C--ACAATGAC s dipOrd1.scaffold_38726 9210 14 - 10940 AGCAA-----C--AGGATGTG i dipOrd1.scaffold_38726 C 0 I 16 s proCap1.scaffold_25464 19836 14 + 25131 TGCAG-----C--CCAATCAC i proCap1.scaffold_25464 T 40 N 0 s sarHar1.chrX_GL868377_random 5425 14 - 7574 tCTGG-----T--AGAAGGAG i sarHar1.chrX_GL868377_random I 10 C 0 s galGal4.chr2 96302568 16 + 148809762 TGGGG-----TAAACCACTTC i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909585 14 - 20806668 TGGGG-----C--ACCATGAC i taeGut1.chr10 C 0 C 0 s xenTro3.GL173416 398757 14 + 427269 TGGGG-----C--CCAATGAT i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3617 14 - 8809 TAAGG-----C--ACTGCAGC i latCha1.JH134567 C 0 C 0 s tetNig2.chr21_random 2793753 19 - 3311323 ATGCAACCATC--ACTGCTAC i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 81990 14 - 121029 CAGCG-----T--GTTATTAC i fr3.HE591906 C 0 C 0 s gasAcu1.chrIX 215541 14 - 20249479 AGACA-----C--ACGGTGAC i gasAcu1.chrIX C 0 C 0 s oryLat2.chr15 304075 14 + 30000224 CAGCA-----C--ACTGATGG i oryLat2.chr15 I 13 C 0 s gadMor1.HE567269 2302815 14 - 2362951 AGGAA-----C--ACTAGAAC i gadMor1.HE567269 C 0 C 0 s danRer7.chr15 561227 13 - 47442429 catca-----c--tcta-tac i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27647 14 + 83855 TGTGT-----C--ACTGTGGA i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e chrPic1.JH584847 891317 235 + 2272089 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-16123.000000 s mm10.chrUn_GL456394 19084 4 + 24323 AG-CA-------- s sarHar1.chrX_GL868377_random 5439 5 - 7574 AGCCA-------- i sarHar1.chrX_GL868377_random C 0 I 1 s galGal4.chr2 96302584 2 + 148809762 ---CA-------- i galGal4.chr2 C 0 I 3 s taeGut1.chr10 18909599 2 - 20806668 ---TA-------- i taeGut1.chr10 C 0 I 4 s xenTro3.GL173416 398771 4 + 427269 AT-TA-------- i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3631 3 - 8809 GT-C--------- i latCha1.JH134567 C 0 C 0 s tetNig2.chr21_random 2793772 4 - 3311323 AG-CA-------- i tetNig2.chr21_random C 0 I 1 s fr3.HE591906 82004 4 - 121029 AG-TA-------- i fr3.HE591906 C 0 I 2 s gasAcu1.chrIX 215555 4 - 20249479 CA-CA-------- i gasAcu1.chrIX C 0 I 2 s oryLat2.chr15 304089 4 + 30000224 GA-TA-------- i oryLat2.chr15 C 0 I 2 s gadMor1.HE567269 2302829 4 - 2362951 CA-CG-------- i gadMor1.HE567269 C 0 I 2 s danRer7.chr15 561240 4 - 47442429 ca-ct-------- i danRer7.chr15 C 0 I 2 s petMar1.Contig205 27661 12 + 83855 AG-CGGATGGCCA i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e dipOrd1.scaffold_38726 9224 16 - 10940 I e chrPic1.JH584847 891317 235 + 2272089 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-1422.000000 s mm10.chrUn_GL456394 19088 2 + 24323 AT s dipOrd1.scaffold_38726 9240 2 - 10940 AT i dipOrd1.scaffold_38726 I 16 N 0 s sarHar1.chrX_GL868377_random 5445 1 - 7574 A- i sarHar1.chrX_GL868377_random I 1 C 0 s xenTro3.GL173416 398775 1 + 427269 -C i xenTro3.GL173416 C 0 I 1 s latCha1.JH134567 3634 1 - 8809 -T i latCha1.JH134567 C 0 C 0 s petMar1.Contig205 27673 2 + 83855 AT i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2793776 1 - 3311323 I e danRer7.chr15 561244 2 - 47442429 I e melGal1.chr8 3499187 675 + 38656188 T e gadMor1.HE567269 2302833 2 - 2362951 I e taeGut1.chr10 18909601 4 - 20806668 I e fr3.HE591906 82008 2 - 121029 I e gasAcu1.chrIX 215559 2 - 20249479 I e galGal4.chr2 96302586 3 + 148809762 I e oryLat2.chr15 304093 2 + 30000224 I e chrPic1.JH584847 891317 235 + 2272089 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-58174.000000 s mm10.chrUn_GL456394 19090 30 + 24323 GTGGAGCACTGTGACTGCATCATGGAGCAC s sarHar1.chrX_GL868377_random 5446 15 - 7574 GTGCAGCA---------------GGGCTAA i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302589 30 + 148809762 ATGGTGCAATGGGACGTCAGAATGCGGCTT i galGal4.chr2 I 3 C 0 s taeGut1.chr10 18909605 30 - 20806668 ACGGGGCACCGGGACTGCATGATGGTGCAC i taeGut1.chr10 I 4 C 0 s xenTro3.GL173416 398777 30 + 427269 GTGGGGCCCAATGATATTACTGTGGGGCCC i xenTro3.GL173416 I 1 C 0 s latCha1.JH134567 3635 30 - 8809 GTGGTGCCCCCTGCTGGCCGGATAAGGAAC i latCha1.JH134567 C 0 C 0 s tetNig2.chr21_random 2793777 10 - 3311323 ----------GTG----------TAACGGC i tetNig2.chr21_random I 1 I 6 s fr3.HE591906 82010 15 - 121029 -----ACAGTGTG----------TTATTAC i fr3.HE591906 I 2 I 5 s gasAcu1.chrIX 215561 18 - 20249479 --GAGACACACGG----------TGACTAC i gasAcu1.chrIX I 2 I 14 s oryLat2.chr15 304095 28 + 30000224 --TCAGTACACTGATGGGGTAGTTCAGCAC i oryLat2.chr15 I 2 I 3 s gadMor1.HE567269 2302835 18 - 2362951 --GAGGAACACTA----------GAACCAC i gadMor1.HE567269 I 2 I 12 s danRer7.chr15 561246 17 - 47442429 --agaacatgatg----------acatca- i danRer7.chr15 I 2 C 0 s petMar1.Contig205 27675 28 + 83855 TTTGTCCGCAATTATTTAATCCAAAAGC-- i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e chrPic1.JH584847 891317 235 + 2272089 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-9285.000000 s mm10.chrUn_GL456394 19120 10 + 24323 AGTTACACCA s sarHar1.chrX_GL868377_random 5461 10 - 7574 GGAAACAGCA i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302619 10 + 148809762 AATGACGTCA i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909635 10 - 20806668 CGGGATTAAA i taeGut1.chr10 C 0 C 0 s xenTro3.GL173416 398807 10 + 427269 AATGATATTG i xenTro3.GL173416 C 0 C 0 s latCha1.JH134567 3665 10 - 8809 TGCAGCGGCT i latCha1.JH134567 C 0 n 0 s tetNig2.chr21_random 2793793 5 - 3311323 -----TACCA i tetNig2.chr21_random I 6 C 0 s fr3.HE591906 82030 5 - 121029 -----TATTA i fr3.HE591906 I 5 C 0 s gasAcu1.chrI 210152 5 + 28185914 -----CGCTA i gasAcu1.chrI n 14 C 0 s gadMor1.HE567269 2302865 7 - 2362951 ---TAGAACC i gadMor1.HE567269 I 12 C 0 s danRer7.chr15 561263 10 - 47442429 cactatacca i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27703 10 + 83855 AACTGCAACG i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e oryLat2.chr15 304123 3 + 30000224 I e chrPic1.JH584847 891317 235 + 2272089 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-1810.000000 s mm10.chrUn_GL456394 19130 1 + 24323 -C s sarHar1.chrX_GL868377_random 5471 1 - 7574 -C i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302629 1 + 148809762 -C i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909645 1 - 20806668 -G i taeGut1.chr10 C 0 C 0 s xenTro3.GL173416 398817 1 + 427269 -C i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2295 1 - 7455 -C i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2793798 1 - 3311323 -C i tetNig2.chr21_random C 0 I 21 s fr3.HE591906 82035 1 - 121029 -C i fr3.HE591906 C 0 I 8 s gasAcu1.chrI 210157 1 + 28185914 -C i gasAcu1.chrI C 0 I 8 s gadMor1.HE567269 2302872 1 - 2362951 -C i gadMor1.HE567269 C 0 n 0 s danRer7.chr15 561273 1 - 47442429 -c i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27713 1 + 83855 A- i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3499187 675 + 38656188 T e oryLat2.chr15 304123 3 + 30000224 I e chrPic1.JH584847 891317 235 + 2272089 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-610.000000 s mm10.chrUn_GL456394 19131 4 + 24323 -AGTG s sarHar1.chrX_GL868377_random 5472 4 - 7574 -AGTA i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302630 4 + 148809762 -AATG i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909646 4 - 20806668 -GATG i taeGut1.chr10 C 0 C 0 s xenTro3.GL173416 398818 4 + 427269 -TGTG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2296 4 - 7455 -AGTG i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2793820 4 - 3311323 -AGCT i tetNig2.chr21_random I 21 C 0 s fr3.HE591906 82044 4 - 121029 -AGCG i fr3.HE591906 I 8 C 0 s gasAcu1.chrI 210166 4 + 28185914 -AGAG i gasAcu1.chrI I 8 C 0 s oryLat2.chr15 304126 4 + 30000224 -GATG i oryLat2.chr15 I 3 C 0 s gadMor1.CAEA01345280 3 4 + 244 -AGGG i gadMor1.CAEA01345280 n 0 C 0 s petMar1.Contig205 27714 4 + 83855 CATT- i petMar1.Contig205 C 0 C 0 e danRer7.chr15 561274 0 - 47442429 C e melGal1.chr8 3499187 675 + 38656188 T e chrPic1.JH584847 891317 235 + 2272089 T e ornAna1.Contig11639 17087 0 + 23295 I a score=4854.000000 s mm10.chrUn_GL456394 19135 3 + 24323 GAG s sarHar1.chrX_GL868377_random 5476 3 - 7574 GGG i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302634 3 + 148809762 TGG i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909650 3 - 20806668 GGG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891082 3 + 2272089 TAG i chrPic1.JH584847 T 235 C 0 s xenTro3.GL173416 398822 3 + 427269 GGG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2300 1 - 7455 --G i latCha1.AFYH01275859 C 0 I 2 s tetNig2.chr21_random 2793824 3 - 3311323 GGC i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 82048 3 - 121029 TGT i fr3.HE591906 C 0 C 0 s gasAcu1.chrI 210170 3 + 28185914 GGG i gasAcu1.chrI C 0 C 0 s oryLat2.chr15 304130 3 + 30000224 GGG i oryLat2.chr15 C 0 C 0 s gadMor1.CAEA01345280 7 3 + 244 TGG i gadMor1.CAEA01345280 C 0 C 0 s petMar1.Contig205 27718 3 + 83855 GAG i petMar1.Contig205 C 0 C 0 e danRer7.chr15 561274 0 - 47442429 C e melGal1.chr8 3499187 675 + 38656188 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-231145.000000 s mm10.chrUn_GL456394 19138 60 + 24323 CACTGTGACACCACAGTG-----GAA--C--ATGTGGCACCATAGTGG--AGCACTGAG---ACA-------------------------------------------------------------------------GCACAGTGG--------------------- s sarHar1.chrX_GL868377_random 5479 61 - 7574 TTCTTT--TTGTACAATG-----GAG--CCAAGGGAATAGCACAGTAGGTGGTCTTTAG---GTA-------------------------------------------------------------------------GAAGA-TGG--------------------- i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498512 60 + 38656188 TATTGTGACGTCACAGTG-----GGC--T--GTGTGACGTCACAATGG--GCCTCTGTG---ACA-------------------------------------------------------------------------GCCTAATGG--------------------- i melGal1.chr8 T 675 I 82 s galGal4.chr2 96302637 134 + 148809762 CTCAGTGACACCGCAAGG----CGAC--T--CTGAGGTGTCAAACTGG--GGCTCTTTG---ACATGACAGATTATCTGTGGGGTTGCAATGGGGCTCTCTGTAGCACTTGAATGGGTGCCTGTCATGGCTGTATGAGGCTCATTGG--------------------- i galGal4.chr2 C 0 I 14 s taeGut1.chr10 18909653 58 - 20806668 -----------CACCCGG-----GAC--T--GCAGGACGGGGCACCGG--GACTATAGC---ACG-------------------------------------------------GGGCACCGG---------------GACTATTGG--------------------- i taeGut1.chr10 C 0 I 3 s chrPic1.JH584847 891085 61 + 2272089 CATGATGGTATCACAATC----TCAC--A--CAGTGAAATCATAATAT--AGTGCTAGG---ACA---------------------------------------------------TTGCAAG---------------GC---------------------------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398825 44 + 427269 CCCAATGATATTACTGTGGGTGGGGC--C--CAATGATATTACTGTGG------------------------------------------------------------------------------------------------------------------------ i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2303 48 - 7455 -----------CACTATT------GC--C--CCCTGGTAGCAGGATAA--GGAACTGCG---GCA-------------------------------------------------------------------------GCTCACTGG--------------------- i latCha1.AFYH01275859 I 2 I 15 s tetNig2.chr21_random 2793827 61 - 3311323 TTTATCACCACCACAGTG----GGCTCCA--CTGCCC-----TGAAAA--AGGGTTCCAATACAA-------------------------------------------------------------------------TTATAGCAG--------------------- i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 82051 54 - 121029 TATTACAGTAGAACAGCG----TGTT--A--TTACAG-----TAGAAC--AGCGCGT-----GTA-------------------------------------------------------------------------TTACAGTAG--------------------- i fr3.HE591906 C 0 C 0 s gasAcu1.chrI 210173 61 + 28185914 CACTACAGGACCTTAGAG----GGGC--A--CTACAGGACCTTAGAGG--GGCACTACA---GGA-------------------------------------------------------------------------CCTTAGAGG--------------------- i gasAcu1.chrI C 0 C 0 s oryLat2.chr15 304133 61 + 30000224 TAGTTCAGCACACTGATG----GGGT--A--GCTCAGCACACTGATGG--GGTAGCTCA---GCA-------------------------------------------------------------------------CACTGATGG--------------------- i oryLat2.chr15 C 0 C 0 s gadMor1.CAEA01345280 10 61 + 244 TACTGTGACATTAGGCGG----TGGT--A--CTGTGACATTAGACGGT--GGTACTGTG---ACA-------------------------------------------------------------------------TCAGACGGT--------------------- i gadMor1.CAEA01345280 C 0 C 0 s danRer7.chr15 561274 57 - 47442429 -tctagaacatgatgaca----tcac--a--ctataccactctagaac--atgatg------aca-------------------------------------------------------------------------ttacactat--------------------- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27721 82 + 83855 ATCTCTCACACACTGGTG----GGAC--T--TTCCAGACGTGCATTGC--TGTAGCGCA---GCA-------------------------------------------------------------------------GTTCTCAGAGTGCGGTCTCCAGAACACCAG i petMar1.Contig205 C 0 C 0 e ornAna1.Contig11639 17087 0 + 23295 I a score=-3282.000000 s mm10.chrUn_GL456394 19198 1 + 24323 -A s sarHar1.chrX_GL868377_random 5540 1 - 7574 -G i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302785 1 + 148809762 -G i galGal4.chr2 I 14 C 0 s taeGut1.chr10 18909714 1 - 20806668 -G i taeGut1.chr10 I 3 C 0 s chrPic1.JH584847 891146 1 + 2272089 -A i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398869 1 + 427269 -G i xenTro3.GL173416 C 0 C 0 s tetNig2.chr21_random 2793888 1 - 3311323 -A i tetNig2.chr21_random C 0 C 0 s gasAcu1.chrI 210234 1 + 28185914 -G i gasAcu1.chrI C 0 C 0 s oryLat2.chr15 304194 1 + 30000224 -G i oryLat2.chr15 C 0 C 0 s gadMor1.CAEA01345280 71 1 + 244 -G i gadMor1.CAEA01345280 C 0 C 0 s danRer7.chr15 561331 1 - 47442429 -a i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27803 1 + 83855 C- i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498572 82 + 38656188 I e latCha1.AFYH01275859 2351 15 - 7455 I e fr3.HE591906 82105 0 - 121029 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-7776.000000 s mm10.chrUn_GL456394 19199 2 + 24323 -GT s sarHar1.chrX_GL868377_random 5541 2 - 7574 -GC i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498654 2 + 38656188 -GC i melGal1.chr8 I 82 C 0 s galGal4.chr2 96302786 2 + 148809762 -GA i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909715 2 - 20806668 -GC i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891147 2 + 2272089 -AT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398870 2 + 427269 -GC i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2366 2 - 7455 -gg i latCha1.AFYH01275859 I 15 C 0 s tetNig2.chr21_random 2793889 2 - 3311323 -CT i tetNig2.chr21_random C 0 C 0 s gasAcu1.chrI 210235 2 + 28185914 -CC i gasAcu1.chrI C 0 C 0 s oryLat2.chr15 304195 2 + 30000224 -AT i oryLat2.chr15 C 0 C 0 s gadMor1.CAEA01345280 72 2 + 244 -GT i gadMor1.CAEA01345280 C 0 C 0 s danRer7.chr15 561332 2 - 47442429 -cc i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27804 2 + 83855 GG- i petMar1.Contig205 C 0 T 670 e fr3.HE591906 82105 0 - 121029 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-45537.000000 s mm10.chrUn_GL456394 19201 34 + 24323 -ACTGTAAC-----ACCACAGTGGA----------------------GCACTGTGACAACAA s sarHar1.chrX_GL868377_random 5543 34 - 7574 -CAGGGAGC-----AGCACATTTGG----------------------GGTCTTTTCCAATAA i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498656 34 + 38656188 -TCTGTGAC-----ATCACAATGGG----------------------GCTCTGTGATGTCAC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302788 56 + 148809762 -TCTGTGAC-----ATCACAATGGAGCATTGTGATTCCAAAAACTGTGCTCTGTGATGTCAC i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909717 34 - 20806668 -ACCGGGAT-----TATAGCATGGG----------------------GCACCGGGACTGCAG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891149 34 + 2272089 -GCAATGAC-----ATCATAATGCT----------------------GCACTATGACATCAA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398872 34 + 427269 -CCAATGAT-----ATTACTGTGGG----------------------GCCCAATGATATTAC i xenTro3.GL173416 C 0 I 1 s latCha1.AFYH01275859 2368 34 - 7455 -gaggggga-----agtGCAGTGGC----------------------TCACTGGTGCCCCCT i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2793891 31 - 3311323 -CAAACAGC--------ACAGTGGA----------------------CTCCAATGCCACCAC i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 82105 37 - 121029 ---AACAGCGTGTTATTACAGTAGA----------------------ACAGCGTGTTATTAC i fr3.HE591906 C 0 C 0 s gasAcu1.chrI 210237 34 + 28185914 -ACTACAGG-----ACCATAGTGGG----------------------CCGCTACAGGACCAT i gasAcu1.chrI C 0 C 0 s oryLat2.chr15 304197 34 + 30000224 -AGCTCAGT-----ACACTGATGGG----------------------GTAGTTCAGCACACT i oryLat2.chr15 C 0 C 0 s gadMor1.CAEA01345280 74 34 + 244 -ACTGTGAC-----ATTAGACGGTG----------------------GTACTGAGACATTAG i gadMor1.CAEA01345280 C 0 C 0 s danRer7.chr15 561334 33 - 47442429 -actctaga-----ac-atgatgac----------------------atcacactataccac i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27136 35 + 83855 ACTGTGAAC-----GTCCTGCTGGG----------------------GAACTGAAACAATCA i petMar1.Contig205 T 670 C 0 e ornAna1.Contig11639 17087 0 + 23295 I a score=-6582.000000 s mm10.chrUn_GL456394 19235 1 + 24323 -A s dasNov3.JH567734 1854713 1 + 1912989 -A i dasNov3.JH567734 N 0 N 0 s sarHar1.chrX_GL868377_random 5577 1 - 7574 -A i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498690 1 + 38656188 -A i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302844 1 + 148809762 -C i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909751 1 - 20806668 -G i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891183 1 + 2272089 -A i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 2402 1 - 7455 -G i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2793922 1 - 3311323 -A i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 82142 1 - 121029 -A i fr3.HE591906 C 0 C 0 s gasAcu1.chrI 210271 1 + 28185914 -A i gasAcu1.chrI C 0 C 0 s oryLat2.chr15 304231 1 + 30000224 -G i oryLat2.chr15 C 0 C 0 s gadMor1.CAEA01345280 108 1 + 244 -A i gadMor1.CAEA01345280 C 0 C 0 s danRer7.chr15 561367 1 - 47442429 -t i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27171 1 + 83855 C- i petMar1.Contig205 C 0 C 0 e xenTro3.GL173416 398906 1 + 427269 I e ornAna1.Contig11639 17087 0 + 23295 I a score=-4480.000000 s mm10.chrUn_GL456394 19236 11 + 24323 GTGGAACACTG s sarHar1.chrX_GL868377_random 5578 10 - 7574 A-GAGCCAGGG i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498691 11 + 38656188 ATGCAGCTCTG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302845 11 + 148809762 ATGGGGCTATG i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909752 11 - 20806668 ACGGGGCACCG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891184 11 + 2272089 ATACAGTGCTA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398907 11 + 427269 GTGGGGCCCAA i xenTro3.GL173416 I 1 C 0 s latCha1.AFYH01275859 2403 11 - 7455 GTGGTGATATA i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2793923 11 - 3311323 GTGGGCTTGAT i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 82143 11 - 121029 GTAGAACAGCG i fr3.HE591906 C 0 C 0 s gasAcu1.chrI 210272 11 + 28185914 GTGGGGCACTA i gasAcu1.chrI C 0 C 0 s oryLat2.chr15 304232 11 + 30000224 ATGGGGTAGTT i oryLat2.chr15 C 0 C 0 s gadMor1.CAEA01345280 109 11 + 244 GGGTGGTACTG i gadMor1.CAEA01345280 C 0 C 0 s danRer7.chr15 561368 11 - 47442429 ctagaacatga i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27172 11 + 83855 ATGCGAAATTG i petMar1.Contig205 C 0 C 0 e ornAna1.Contig11639 17087 0 + 23295 I a score=-32221.000000 s mm10.chrUn_GL456394 19247 20 + 24323 ---------------------TGA-TGTCACAGTTGATCACT s sarHar1.chrX_GL868377_random 5588 20 - 7574 ---------------------GAA-TAGCACAGTAGGTGGTC i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498702 21 + 38656188 ---------------------TGATTGTCACAGTGGGATTCT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302856 42 + 148809762 AGACCTCACAACACAGTACACCGATTCCCAAACTGGTGCTCT i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909763 20 - 20806668 ---------------------GGACTGCAGCA-TGGGGCACC i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891195 20 + 2272089 ---------------------TGA-TATCACAATGTAACACA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398918 20 + 427269 ---------------------TGA-TATTACTGTGGGGCCCA i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2414 20 - 7455 ---------------------AGG-AATTGCAGCAGATCACT i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2793934 19 - 3311323 ---------------------CAC-CACCACAGCTGGCTCT- i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 82154 16 - 121029 ---------------------TGT-TATTACAGTAGAA---- i fr3.HE591906 C 0 C 0 s gasAcu1.chrI 210283 20 + 28185914 ---------------------CAG-GACCATAGTGGGCCACT i gasAcu1.chrI C 0 n 0 s oryLat2.chr15 304243 7 + 30000224 ---------------------CCG-CACA------------- i oryLat2.chr15 C 0 I 7 s gadMor1.CAEA01345280 120 20 + 244 ---------------------TGA-CATTAGAGTGTGGTACT i gadMor1.CAEA01345280 C 0 C 0 s danRer7.chr15 561379 20 - 47442429 ---------------------tga-catcacactataccact i danRer7.chr15 C 0 I 10 e petMar1.Contig205 27183 0 + 83855 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-44758.000000 s mm10.chrUn_GL456394 19267 24 + 24323 GT--GACATCACAGTGGAGCACTGTG s sarHar1.chrX_GL868377_random 5608 26 - 7574 TTTAGGTAGAAGATGGGGGCAATGCA i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498723 24 + 38656188 GT--GACGTCACAATGGGGCTCTGTG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96302898 24 + 148809762 GT--GACGTCACAGTAGGGCTCTGTG i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909783 23 - 20806668 GG--GAC-TATTGGAGGGGCACCGGG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891215 24 + 2272089 GT--CATGTTACAATGCAGcactatt i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398938 24 + 427269 AT--GATATTGCTGTGGGGCCCAATG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2434 24 - 7455 gg--cgccccctggtggtgggatAAG i latCha1.AFYH01275859 C 0 I 2 s tetNig2.chr21_random 2793953 9 - 3311323 AC--GGCTTCA--------------- i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 82170 2 - 121029 ---------CA--------------- i fr3.HE591906 C 0 C 0 s gasAcu1.chrIX 215593 13 - 20249479 GT--GACTTCATAAG----------- i gasAcu1.chrIX I 14 C 0 s oryLat2.chr15 304257 9 + 30000224 GA--TAGTTCA--------------- i oryLat2.chr15 I 7 C 0 s gadMor1.CAEA01345280 140 23 + 244 GT--GACATCAGACGGTGGTACTGT- i gadMor1.CAEA01345280 C 0 C 0 s danRer7.chr15 561409 23 - 47442429 at--gacatcacactacaccactct- i danRer7.chr15 I 10 C 0 e petMar1.Contig205 27183 0 + 83855 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-3248.000000 s mm10.chrUn_GL456394 19291 3 + 24323 ACA s sarHar1.chrX_GL868377_random 5634 3 - 7574 GCA i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302922 3 + 148809762 ACG i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909806 3 - 20806668 ACT i taeGut1.chr10 C 0 C 0 s xenTro3.GL173416 398962 3 + 427269 ATA i xenTro3.GL173416 C 0 I 103 s latCha1.AFYH01275859 2460 1 - 7455 A-- i latCha1.AFYH01275859 I 2 C 0 s danRer7.chr15 561432 1 - 47442429 a-- i danRer7.chr15 C 0 C 0 e tetNig2.chr21_random 2793962 0 - 3311323 C e melGal1.chr8 3498747 0 + 38656188 C e gadMor1.CAEA01345280 163 0 + 244 C e petMar1.Contig205 27183 0 + 83855 C e fr3.HE591906 82172 0 - 121029 C e gasAcu1.chrIX 215606 0 - 20249479 C e oryLat2.chr15 304266 0 + 30000224 C e chrPic1.JH584847 891239 0 + 2272089 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-114588.000000 s mm10.chrUn_GL456394 19294 12 + 24323 ----------------------------C---------------AACATT--GG-AGT s sarHar1.chrX_GL868377_random 5637 14 - 7574 ----------------------------G---------------CACAGTAAGG-GGT i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302925 12 + 148809762 ----------------------------T---------------CACAAT--GG-GGC i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909809 27 - 20806668 ----------------------------TGAGGGCCCCGGGATGCAGGTC--GG-GGC i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891239 8 + 2272089 -----------------------------------------------att--gt-tgt i chrPic1.JH584847 C 0 C 0 s latCha1.AFYH01275859 2461 20 - 7455 -----------------------------------CTGCTGTGGTTCACT--GG-CAC i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2793962 33 - 3311323 ---------------ACGA-------TTGGCTCTTTCACCGAAGATGTGA--AC-ACC i tetNig2.chr21_random C 0 C 0 s fr3.HE591906 82172 29 - 121029 ---------------GCGC-------GTG----TATTACAGTAGAACAGC--GT-GTT i fr3.HE591906 C 0 C 0 s gasAcu1.chrIX 215606 34 - 20249479 -------AG----TCTCAC-------GGG----TACCTCAAAAGAGTCTC--ACGGTG i gasAcu1.chrIX C 0 C 0 s oryLat2.chr15 304266 36 + 30000224 ---------------GCACACTGATGGGG----TAGTTCAGCACACTGAT--GG-GGT i oryLat2.chr15 C 0 C 0 s gadMor1.CAEA01345280 163 37 + 244 -GACATTAG------ACGG-------TGG----TACTGTGACATTAGAGT--GT-GGT i gadMor1.CAEA01345280 C 0 C 0 s danRer7.chr15 561433 43 - 47442429 caacatgatgacatcacac--------ta----caccactctagaacatg--at-gac i danRer7.chr15 C 0 C 0 e melGal1.chr8 3498747 0 + 38656188 C e petMar1.Contig205 27183 0 + 83855 C e xenTro3.GL173416 398965 103 + 427269 I e ornAna1.Contig11639 17087 0 + 23295 I a score=-116311.000000 s mm10.chrUn_GL456394 19306 38 + 24323 ATTGTGACGCCATAGTGGAGCACAGTGACAGCAGAGTT------ s sarHar1.chrX_GL868377_random 5651 27 - 7574 CTTTCGGTG---TAAGGGAGGTTA--------AGGGAG------ i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302937 31 + 148809762 TTTGTGACCTC-ACAATGGGGATC------ACCGACTC------ i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909836 33 - 20806668 ACCG-GGCAGC-ACGGGCAGGATA---GGGGCCGGGTG------ i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891247 28 + 2272089 tgtt---catC-AAGTTTAgtatg------gtagtgcc------ i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399068 12 + 427269 --------------------------TACTGTGGGGCC------ i xenTro3.GL173416 I 103 C 0 s latCha1.AFYH01275859 2481 32 - 7455 CCCCTGGTGGCGGGAGGGGGAACT------GCAGTGGC------ i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2793995 11 - 3311323 ACTGCCATGAA--------------------------------- i tetNig2.chr21_random C 0 I 17 s fr3.HE591906 82201 11 - 121029 ATTACAGAGTG--------------------------------- i fr3.HE591906 C 0 n 0 s gasAcu1.chrIX 215640 11 - 20249479 ACTACAAAGAC--------------------------------- i gasAcu1.chrIX C 0 I 1 s oryLat2.chr15 304302 11 + 30000224 AGTTCAGCACA--------------------------------- i oryLat2.chr15 C 0 I 14 s gadMor1.CAEA01345280 200 11 + 244 ACTGTGACATC--------------------------------- i gadMor1.CAEA01345280 C 0 I 6 s danRer7.chr15 561476 9 - 47442429 atcacacta----------------------------------- i danRer7.chr15 C 0 C 0 s petMar1.Contig87884 682 44 + 4648 TCTCTGACATCACAATGGGGCTCTCCGACAGCGGCGGCATCGTC i petMar1.Contig87884 I 211 C 0 e melGal1.chr8 3498747 0 + 38656188 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-4399.000000 s mm10.chrUn_GL456394 19344 5 + 24323 CAGCA-- s sarHar1.chrX_GL868377_random 5678 5 - 7574 CAGCA-- i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302968 5 + 148809762 CAAAA-- i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909869 5 - 20806668 CAGGA-- i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891275 5 + 2272089 taagg-- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399080 5 + 427269 CAATA-- i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2513 5 - 7455 TCGCT-- i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2794023 3 - 3311323 --ACA-- i tetNig2.chr21_random I 17 I 5 s gasAcu1.chrIX 215652 2 - 20249479 ---CA-- i gasAcu1.chrIX I 1 C 0 s oryLat2.chr15 304327 5 + 30000224 CAGCA-- i oryLat2.chr15 I 14 C 0 s gadMor1.CAEA01345280 217 5 + 244 TGGTA-- i gadMor1.CAEA01345280 I 6 I 3 s danRer7.chr15 561485 5 - 47442429 cacca-- i danRer7.chr15 C 0 I 3 s petMar1.Contig87884 726 5 + 4648 --ACGCC i petMar1.Contig87884 C 0 C 0 e melGal1.chr8 3498747 0 + 38656188 C e fr3.HE591906 82212 0 - 121029 I e ornAna1.Contig11639 17087 0 + 23295 I a score=269.000000 s mm10.chrUn_GL456394 19349 3 + 24323 CTG s sarHar1.chrX_GL868377_random 5683 3 - 7574 TAG i sarHar1.chrX_GL868377_random C 0 C 0 s taeGut1.chr10 18909874 3 - 20806668 CGG i taeGut1.chr10 C 0 C 0 s petMar1.Contig87884 731 3 + 4648 CCG i petMar1.Contig87884 C 0 C 0 e tetNig2.chr21_random 2794026 5 - 3311323 I e danRer7.chr15 561490 3 - 47442429 I e melGal1.chr8 3498747 0 + 38656188 C e gadMor1.CAEA01345280 222 3 + 244 I e latCha1.AFYH01275859 2518 0 - 7455 C e fr3.HE591906 82212 0 - 121029 I e gasAcu1.chrIX 215654 0 - 20249479 C e xenTro3.GL173416 399085 0 + 427269 C e galGal4.chr2 96302973 0 + 148809762 C e oryLat2.chr15 304332 0 + 30000224 C e chrPic1.JH584847 891280 0 + 2272089 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-15309.000000 s mm10.chrUn_GL456394 19352 11 + 24323 TAAAACTAG--------AG s sarHar1.chrX_GL868377_random 5686 5 - 7574 TAAAA-------------- i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302973 2 + 148809762 -----------------AT i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909877 19 - 20806668 CCGGTATGGCCTATAGCAT i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891280 2 + 2272089 -----------------ac i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399085 2 + 427269 -----------------AC i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84394 1 + 93265 ------------------T i fr3.HE591961 I 56 I 6 s gadMor1.CAEA01345280 225 1 + 244 ------------------T i gadMor1.CAEA01345280 I 3 T 226 s danRer7.chr15 561493 1 - 47442429 ------------------t i danRer7.chr15 I 3 I 1 e tetNig2.chr21_random 2794026 5 - 3311323 I e melGal1.chr8 3498747 0 + 38656188 C e petMar1.Contig87884 734 0 + 4648 C e latCha1.AFYH01275859 2518 0 - 7455 C e gasAcu1.chrIX 215654 0 - 20249479 C e oryLat2.chr15 304332 0 + 30000224 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-247316.000000 s mm10.chrUn_GL456394 19363 83 + 24323 TG-AGCA--TAATGACAAAAGTGTGGAA--CACTGTGACAGCACTTTAG-----AGCACTGTAACACCACAGT------GGAGCACTGTGACA--ACA--GAG s sarHar1.chrX_GL868377_random 5691 60 - 7574 ---GGTG--TTTTGGTAGAAGGGGGGC-----------------------------CAAGGGAAAAGCATAGT-----AGGTGGTCTTTGGGT--AGA--ATG i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96302975 83 + 148809762 GG-TGCA--CTGTGACATCACAATAGGA--CTCCCTGTTGTCACAATGC-----GGCCCTGAGATGTCAAAGT------GGGGCTGTTTGAAT--TCA--CAG i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909896 72 - 20806668 GG-GGCA--CCGGCACTGCAGGACGGGG--CACCGGGACTGCAGGACGG-----GGCACCGGGACTGCAGCAC------GGGG-------------CA--CCG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891282 56 + 2272089 ca-gcCA------------AGAAtggca--ccccattgtgcta-----------agcccTGCACAAACAGAGT------AGCA-------------GG--CAG i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399087 90 + 427269 CA-GTCA--GTACTAGTGCATAAAAGTGATTAACGTGCTACTAAGTCAG-----TTCATTGGGGCAGTGGGATTTACCTCAAGTTCTTTCATT---CA--GTG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2518 85 - 7455 ---GGCATCccctggtggtgggaggggg--aactGCAGTGGATCACTAT-----TGCCCCCTGGCAGCAGGAT------AAGGAACTGCGGCAGCTCA--CTG i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2794031 64 - 3311323 ---ACCA--CTACGACCACAATGAGAGC--AACGG----------------------GCTGGAAGACCGCAGC------TGGCTCTCTCACCA---CA-GCTG i tetNig2.chr21_random I 5 C 0 s fr3.HE591961 84401 37 + 93265 ---TCCC--AAACGTGCA----------------------------------------CTGAAACATC----------------CCCTTCGTG---CA--CTG i fr3.HE591961 I 6 C 0 s gasAcu1.chrIX 215654 46 - 20249479 -----CA--TGATGACTACAAAGAGACA--CACGGTGACTT----------------GTGGAGACACA--------------------------------CGG i gasAcu1.chrIX C 0 C 0 s gadMor1.CAEA01380359 203 54 - 313 GGTGGTA--CTGTGACATTAGACGGTGG--TACTGTGACATTA-------------GACGGTGGTACT--------------------------------TTG i gadMor1.CAEA01380359 n 226 C 0 s danRer7.chr15 561495 72 - 47442429 --gaaca--tgataacatcacactatac--cactctagaag----------------atgatgacatcacact------actccactctagaa---caggatg i danRer7.chr15 I 1 C 0 s petMar1.Contig87884 734 52 + 4648 ------------GGAACATCGAGCGAGC--GCCTATGGCCAGGCGACAGGCGCCATGACTGCGGCG------------------------------------- i petMar1.Contig87884 C 0 T 384 e melGal1.chr8 3498747 0 + 38656188 C e oryLat2.chr15 304332 0 + 30000224 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-8394.000000 s mm10.chrUn_GL456394 19446 4 + 24323 TTGA s sarHar1.chrX_GL868377_random 5751 4 - 7574 GGGG i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303058 4 + 148809762 ATGT i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909968 4 - 20806668 GGAC i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891338 4 + 2272089 ATTC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399177 4 + 427269 GGGG i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2603 4 - 7455 GCAC i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2794095 4 - 3311323 GCTC i tetNig2.chr21_random C 0 C 0 s fr3.HE591961 84438 4 + 93265 AAAC i fr3.HE591961 C 0 C 0 s gasAcu1.chrIX 215700 4 - 20249479 TGTC i gasAcu1.chrIX C 0 C 0 s gadMor1.CAEA01380359 257 4 - 313 ACAt i gadMor1.CAEA01380359 C 0 C 0 s danRer7.chr15 561567 4 - 47442429 acat i danRer7.chr15 C 0 C 0 e melGal1.chr8 3498747 0 + 38656188 C e petMar1.Contig87884 786 384 + 4648 T e oryLat2.chr15 304332 0 + 30000224 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-29446.000000 s mm10.chrUn_GL456394 19450 8 + 24323 ACACTGTA- s sarHar1.chrX_GL868377_random 5755 8 - 7574 CCACTGAG- i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303062 8 + 148809762 TGTCCCAG- i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909972 8 - 20806668 TATTGGAG- i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891342 6 + 2272089 TGCCTC--- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399181 8 + 427269 AAGCTACG- i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2607 8 - 7455 CCccctgg- i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2794099 8 - 3311323 CACCAACA- i tetNig2.chr21_random C 0 I 24 s fr3.HE591961 84442 8 + 93265 CTCCCAAA- i fr3.HE591961 C 0 I 23 s gasAcu1.chrIX 215704 8 - 20249479 CACAAAGA- i gasAcu1.chrIX C 0 I 1 s gadMor1.CAEA01380359 261 8 - 313 tagtaata- i gadMor1.CAEA01380359 C 0 n 0 s danRer7.chr15 561571 7 - 47442429 cacacta-- i danRer7.chr15 C 0 I 13 s petMar1.Contig205 27183 8 + 83855 -ACACAGAC i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498747 0 + 38656188 C e oryLat2.chr15 304332 0 + 30000224 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-65532.000000 s mm10.chrUn_GL456394 19458 16 + 24323 --------------TAACCacag-----------------tagagag s sarHar1.chrX_GL868377_random 5763 14 - 7574 --------------TAG-CACAA-----------------TA-AGGG i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303070 31 + 148809762 --------------TCA-CACAGTCCCAGGTGTCAcaatgtg-gggt i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18909980 12 - 20806668 --------------GGG-CAC-------------------CG-GGAC i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891348 6 + 2272089 ----------------------------------------TA-AGAT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399189 3 + 427269 --------------TAA------------------------------ i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 2615 8 - 7455 --------------tgg-----------------------tg-gga- i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2794131 2 - 3311323 --------------CA------------------------------- i tetNig2.chr21_random I 24 I 8 s fr3.HE591961 84473 2 + 93265 --------------TG------------------------------- i fr3.HE591961 I 23 I 8 s danRer7.chr15 561591 2 - 47442429 --------------aa------------------------------- i danRer7.chr15 I 13 C 0 s petMar1.Contig205 27191 16 + 83855 CACTCACAGACTGCTA------------------------------- i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498747 0 + 38656188 C e gadMor1.CAEA01380359 269 0 - 313 I e gasAcu1.chrIX 215712 1 - 20249479 I e oryLat2.chr15 304332 0 + 30000224 C e ornAna1.Contig11639 17087 0 + 23295 I a score=1221.000000 s mm10.chrUn_GL456394 19474 1 + 24323 c s sarHar1.chrX_GL868377_random 5777 1 - 7574 T i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303101 1 + 148809762 t i galGal4.chr2 C 0 I 50 s taeGut1.chr10 18909992 1 - 20806668 T i taeGut1.chr10 C 0 I 12 s chrPic1.JH584847 891354 1 + 2272089 T i chrPic1.JH584847 C 0 I 20 s tetNig2.chr21_random 2794141 1 - 3311323 C i tetNig2.chr21_random I 8 C 0 s fr3.HE591961 84483 1 + 93265 C i fr3.HE591961 I 8 C 0 s oryLat2.chr15 304332 1 + 30000224 C i oryLat2.chr15 C 0 C 0 s danRer7.chr15 561593 1 - 47442429 t i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27207 1 + 83855 T i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498747 0 + 38656188 C e gadMor1.CAEA01380359 269 0 - 313 I e latCha1.AFYH01275859 2623 0 - 7455 C e gasAcu1.chrIX 215712 1 - 20249479 I e xenTro3.GL173416 399192 0 + 427269 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-7320.000000 s mm10.chrUn_GL456394 19475 8 + 24323 attgtcag- s sarHar1.chrX_GL868377_random 5778 8 - 7574 TCTTTCag- i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303152 5 + 148809762 ---GACAT- i galGal4.chr2 I 50 C 0 s taeGut1.chr10 18910005 8 - 20806668 ACCGGCAC- i taeGut1.chr10 I 12 C 0 s chrPic1.JH584847 891375 8 + 2272089 ACAGACAC- i chrPic1.JH584847 I 20 C 0 s tetNig2.chr21_random 2794142 8 - 3311323 ACCCACAT- i tetNig2.chr21_random C 0 I 2 s fr3.HE591961 84484 8 + 93265 ATCCCCTT- i fr3.HE591961 C 0 I 2 s gasAcu1.chrIX 215713 8 - 20249479 ACACACGG- i gasAcu1.chrIX I 1 I 2 s oryLat2.chr15 304333 8 + 30000224 ACTGATGG- i oryLat2.chr15 C 0 I 2 s danRer7.chr15 561594 8 - 47442429 gatgacat- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27208 8 + 83855 -CTTGTACG i petMar1.Contig205 C 0 C 0 e melGal1.chr8 3498747 0 + 38656188 C e gadMor1.CAEA01380359 269 0 - 313 I e latCha1.AFYH01275859 2623 0 - 7455 C e xenTro3.GL173416 399192 0 + 427269 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-360768.000000 s mm10.chrUn_GL456394 19483 67 + 24323 taca----gtggagcact------------------gtgacactaca------------------------------gtggagcactgt---------gac-agta---caaaggag-cactg-----------tgacaccaca s sarHar1.chrX_GL868377_random 5786 63 - 7574 taga----agaggggaaa------------------aggaacgTAGG------------------------------GTCTTTAGTTAC---------AAG-ATTAGGGCAAGGGAG-TA------------------ACTGTA i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498747 49 + 38656188 --------------------------------------ATTGTCACA------------------------------GTAGGGCTCTGT---------GAC-GTTA---CAATGGGG-C--TC-----------TGATGTCACA i melGal1.chr8 C 0 C 0 s galGal4.chr2 96303157 70 + 148809762 CACA----ATATGGGATC---------------CTTGTGATATCATG------------------------------ATGGAAGTCTGT---------GAA-ATCA---AAATGGGG-CAGTG-----------TGATTACATC i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18910013 68 - 20806668 TGCA----GGACGGGGCA---------------CCGGGACTG-CAGC------------------------------ATGGGGCACCGG---------GACTATTG---GA--GGGG-CACCG-----------GGACTGCAGG i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891383 74 + 2272089 AGCACGGGGGAAGGGGTA--------------TCCTACACAGGCAGA------------------------------GCA-ATctatgt---------gat-ggca---gcaaatag-CATGT-----------TAGTTTAATG i chrPic1.JH584847 C 0 I 408 s xenTro3.GL173416 399192 66 + 427269 ---------ATTGCGGAA------------------GTTTTGGCGTA------------------------------ATGTGTAACTGTTGTGACCGGGCC-CCCA---TACAGAAG-AACTG-----------TCACA----- i xenTro3.GL173416 C 0 I 4 s latCha1.AFYH01275859 2623 83 - 7455 ------gggggaagtGCAGTGGCTCACTGGCGCCCCCTGGTGGTGAT------------------------------ATAAGGAACTGC---------AGC-AGTT---CACTGGCA-CCCCG-----------TGGTGGCGGG i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2794152 77 - 3311323 ---------------------------CAGGC---TCCACTGCCACCACA---Gctggctc---------cacctccacagTGGACTCC---------GTT-GTCC---CCACAGTG-TCTTT-----------CTCCACCACC i tetNig2.chr21_random I 2 C 0 s fr3.HE591961 84494 59 + 93265 -----------------------------------TGCACTGAAACC-------------------------TCCCAAACGTGCACTGA---------AAC-CTCC---CAAACGTG-CACTG-----------AAACCTCCCA i fr3.HE591961 I 2 C 0 s gasAcu1.chrIX 215723 48 - 20249479 --------------------------------------ACTACAAAG------------------------AGACACACGGTGACTACA---------AAG-AGAC---ACACGGTG---------------------ACCACA i gasAcu1.chrIX I 2 C 0 s oryLat2.chr15 304343 78 + 30000224 ---------------------------TAGTTCAGCACACTGATGGG-------GTAGTTC-------AGCACACTGATGGGGTAGTTC---------AGC-ACAC---TGATGGGG-TAGTT-----------CAGCACACCG i oryLat2.chr15 I 2 C 0 s gadMor1.CAEA01345280 0 88 + 244 ---------------------------TAGAGGGTGGTACTGTGACATTAGGCGGTGGTACTG-----TGACATTAGACGGTGGTACTG---------TGA-CATC---AGACGGTGGTACTG-----------TGACATTAGA i gadMor1.CAEA01345280 T 226 C 0 s danRer7.chr15 561602 76 - 47442429 -----------------------------------cacactacacca-----ctctagaacagg---atgacatcacactataccactc---------tag-aaga---tgatgaca-tcaca-----------ctacaccact i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27216 67 + 83855 ---------------------------------------------------------------TACGAGATATATGCACGACTTTCCTT---------GAG-AATA---ACACTGAG-AATAGGAGTCTGATGATGATATCACA i petMar1.Contig205 C 0 C 0 e ornAna1.Contig11639 17087 0 + 23295 I a score=-53376.000000 s mm10.chrUn_GL456394 19550 20 + 24323 gggtagc-actgtgacacccc---- s sarHar1.chrX_GL868377_random 5849 16 - 7574 CATTAG-----GTGGTCTTTC---- i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498796 20 + 38656188 GTGTGGC-TCTGTGACGTCAT---- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96303227 20 + 148809762 ATGGGAC-TCTGTGATGTCAC---- i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18910081 20 - 20806668 ACGGGGC-ACCGGGACTTCAG---- i taeGut1.chr10 C 0 C 0 s chrPic1.JH584847 891865 21 + 2272089 ctaaagcatttcagtccttaG---- i chrPic1.JH584847 I 408 C 0 s xenTro3.GL173416 399262 18 + 427269 CCAGCAC-AGTTTAACCCC------ i xenTro3.GL173416 I 4 T 884 s latCha1.AFYH01275859 2706 20 - 7455 AGGGGGA-ACTGCAGCGGCTC---- i latCha1.AFYH01275859 C 0 C 0 s tetNig2.chr21_random 2794229 20 - 3311323 ACAGTGG-GCTCCACTGCCCT---- i tetNig2.chr21_random C 0 C 0 s fr3.HE591961 84553 20 + 93265 AACGTGC-ACTGAAACGTCCC---- i fr3.HE591961 C 0 C 0 s gasAcu1.chrIX 215771 20 - 20249479 AAGAGAC-ACACGGTGACCAC---- i gasAcu1.chrIX C 0 C 0 s oryLat2.chr15 304421 20 + 30000224 ATGGGGT-ACTTCAGCACACC---- i oryLat2.chr15 C 0 C 0 s gadMor1.CAEA01345280 88 20 + 244 CGGTGGT-ACTGAGACATTAG---- i gadMor1.CAEA01345280 C 0 C 0 s danRer7.chr15 561678 20 - 47442429 ccagaac-atgatgacatcac---- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27283 16 + 83855 ---------GTCTCGTGTTACATAC i petMar1.Contig205 C 0 C 0 e ornAna1.Contig11639 17087 0 + 23295 I a score=-52987.000000 s mm10.chrUn_GL456394 19570 19 + 24323 agtagaacactgtgacacc--------- s sarHar1.chrX_GL868377_random 5865 5 - 7574 CATAG----------------------- i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498816 19 + 38656188 AATAAGGCTCTGTGACATC--------- i melGal1.chr8 C 0 T 104 s galGal4.chr2 96303247 19 + 148809762 AATGGGGCACTGTGACCTC--------- i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18910101 19 - 20806668 GACGGGGCACCGGGACTGC--------- i taeGut1.chr10 C 0 I 3 s chrPic1.JH584847 891886 19 + 2272089 GAGACTGAACTGTTATGTT--------- i chrPic1.JH584847 C 0 I 6 s xenTro3.GL173343 55895 13 - 535221 ------GTGCTGTCACTGT--------- i xenTro3.GL173343 n 884 I 3 s latCha1.AFYH01275859 2726 11 - 7455 --------ACTGTTGCCCC--------- i latCha1.AFYH01275859 C 0 I 21 s tetNig2.chr21_random 2794249 13 - 3311323 ------GAAAATGAGTTCC--------- i tetNig2.chr21_random C 0 I 1 s fr3.HE591961 84573 11 + 93265 ------AAACGTGCACT----------- i fr3.HE591961 C 0 C 0 s gasAcu1.chrIX 215791 5 - 20249479 ------AAAGA----------------- i gasAcu1.chrIX C 0 C 0 s oryLat2.chr15 304441 13 + 30000224 ------GATGGGGTACTTC--------- i oryLat2.chr15 C 0 I 6 s gadMor1.CAEA01345280 108 13 + 244 ------AGGGTGGTACTGT--------- i gadMor1.CAEA01345280 C 0 I 6 s danRer7.chr15 561698 13 - 47442429 ------actataccactcc--------- i danRer7.chr15 C 0 I 8 s petMar1.Contig205 27299 19 + 83855 ---------gtacaacttctttcgcacc i petMar1.Contig205 C 0 C 0 e ornAna1.Contig11639 17087 0 + 23295 I a score=-164979.000000 s mm10.chrUn_GL456394 19589 48 + 24323 aaaatg----------------------------gagcactgtga-cagaacagt-------agag----tacTGGGACAACAAAGTG---- s sarHar1.chrX_GL868377_random 5870 52 - 7574 AAGATG----------------------------GGGCCAGGGAT-CAGCATAGT-------AGGGGGTCTGTCGGTAGAAGGGGGTG---- i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498731 29 + 38656188 ACAATG----------------------------GGGCTCTGTGATTGTCACAGT-------AG---------------------------- i melGal1.chr8 T 104 C 0 s galGal4.chr2 96303266 49 + 148809762 ACAGTGGAGTACACCGCTTCCAACATA-------GAGCTCTGTGA-TGTCAGAAT-------AG---------------------------- i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18910123 45 - 20806668 ACGGGG-----CACCGGGACTATTGGA------GGGGCACCGGGA-CTACAGAAT-------GG---------------------------- i taeGut1.chr10 I 3 C 0 s chrPic1.JH584847 891911 36 + 2272089 GCATGG-----CCCTGGCT---------------GGGCCCCATTT-TATTATAGC-------AT---------------------------- i chrPic1.JH584847 I 6 I 8 s xenTro3.GL173343 55911 41 - 535221 ACTATG-----GCCTGGCACCCTA----------GAACCCTGTGC-TGTCACTGT-------GT---------------------------- i xenTro3.GL173343 I 3 C 0 s latCha1.AFYH01275859 2758 28 - 7455 GCAGTG----------------------------GCTCCCTGACA-CCCACTAGT-------GG---------------------------- i latCha1.AFYH01275859 I 21 I 7 s tetNig2.chr21_random 2794263 15 - 3311323 -----------------------------------------GTAC-CATTATAGC-------AG---------------------------- i tetNig2.chr21_random I 1 I 17 s fr3.HE591961 84584 20 + 93265 -----------------------------------------GAAA-CATCCCGGC--CGTGGGG---------------------------- i fr3.HE591961 C 0 T 246 s gasAcu1.chrIX 215796 22 - 20249479 -----------------------------------------GACA-CACGGTGACTACAAAGAG---------------------------- i gasAcu1.chrIX C 0 I 21 s oryLat2.chr15 304460 20 + 30000224 ------------------------------------CCGATGGGG-TACTTCAGC-------AC---------------------------- i oryLat2.chr15 I 6 I 7 s gadMor1.CAEA01345280 127 23 + 244 ------------------------------------AGAGTGTGG-TACTGTGAC----ATCAG---------------------------- i gadMor1.CAEA01345280 I 6 I 4 s danRer7.chr15 561719 20 - 47442429 ------------------------------------atgacatca-cactatacc-------ac---------------------------- i danRer7.chr15 I 8 I 14 s petMar1.Contig205 27318 52 + 83855 --------gtgcatggCTAACCATGCTTATCGGAAGGTGCGGGCG-AACGACCAC-------AA------------------------ACTA i petMar1.Contig205 C 0 C 0 e ornAna1.Contig11639 17087 0 + 23295 I a score=-2769.000000 s mm10.chrUn_GL456394 19637 1 + 24323 -A s sarHar1.chrX_GL868377_random 5922 1 - 7574 -C i sarHar1.chrX_GL868377_random C 0 C 0 s gasAcu1.chrIX 215839 1 - 20249479 -A i gasAcu1.chrIX I 21 C 0 s gadMor1.CAEA01345280 154 1 + 244 -T i gadMor1.CAEA01345280 I 4 C 0 s danRer7.chr15 561753 1 - 47442429 -a i danRer7.chr15 I 14 C 0 s petMar1.Contig205 27370 1 + 83855 T- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794278 17 - 3311323 I e melGal1.chr8 3498760 0 + 38656188 C e taeGut1.chr10 18910168 0 - 20806668 C e latCha1.AFYH01275859 2786 7 - 7455 I e fr3.HE591961 84604 246 + 93265 T e xenTro3.GL173343 55952 0 - 535221 C e galGal4.chr2 96303315 0 + 148809762 C e oryLat2.chr15 304480 7 + 30000224 I e chrPic1.JH584847 891947 8 + 2272089 I e ornAna1.Contig11639 17087 0 + 23295 I a score=-13969.000000 s mm10.chrUn_GL456394 19638 16 + 24323 AGCACTGTGACACCAC s sarHar1.chrX_GL868377_random 5923 14 - 7574 --CAAGGGAAGAGCAC i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498760 16 + 38656188 GGCTCTGTGACGTTAC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96303315 16 + 148809762 GGCTCCCTAACGTCAC i galGal4.chr2 C 0 C 0 s taeGut1.chr10 18910168 16 - 20806668 GGCACCGGGACTATAG i taeGut1.chr10 C 0 C 0 s anoCar2.chrUn_GL344973 0 16 - 14315 AGCTCGATGACCGTCT i anoCar2.chrUn_GL344973 N 0 C 0 s chrPic1.JH584847 891955 16 + 2272089 GGTGAAATGACACCAC i chrPic1.JH584847 I 8 C 0 s xenTro3.GL173343 55952 16 - 535221 CACTATGGGCTGGCAC i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 2793 16 - 7455 GGAACTGCAGCGGCTC i latCha1.AFYH01275859 I 7 C 0 s tetNig2.chr21_random 2794295 8 - 3311323 --------GACTCCAA i tetNig2.chr21_random I 17 I 867 s gasAcu1.chrIX 215840 16 - 20249479 CACACAGTGACTACAA i gasAcu1.chrIX C 0 C 0 s oryLat2.chr15 304487 11 + 30000224 -----ATGTACTTCAG i oryLat2.chr15 I 7 I 8 s gadMor1.CAEA01345280 155 16 + 244 GGTACTGTGACATTAG i gadMor1.CAEA01345280 C 0 C 0 s danRer7.chr15 561754 16 - 47442429 catcacactaCACCAC i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27371 7 + 83855 ---------AGACCAA i petMar1.Contig205 C 0 C 0 e fr3.HE591961 84604 246 + 93265 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-74978.000000 s mm10.chrUn_GL456394 19654 29 + 24323 AGGGGAGCACTGTGACACCAGAGTGGAGC s sarHar1.chrX_GL868377_random 5937 28 - 7574 AATAGGGC-CTCTTTTGGTAGAAGGGGGC i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498776 2 + 38656188 AA--------------------------- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96303331 6 + 148809762 AA-----------------------GGTG i galGal4.chr2 C 0 I 2 s taeGut1.chr10 18910184 26 - 20806668 GATGGGGCACCGGGAC--TAT-TGGAGGG i taeGut1.chr10 C 0 I 2 s anoCar2.chrUn_GL344973 16 27 - 14315 ATCGGAGCTCGATGAC--CATCTATCAGA i anoCar2.chrUn_GL344973 C 0 I 2 s chrPic1.JH584847 891971 29 + 2272089 AAAGGAGCACAATGACATCACCACACAGA i chrPic1.JH584847 C 0 T 541 s xenTro3.GL173343 55968 29 - 535221 CCTAGAACCCTGTGCTGTCACTGTGTCAC i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 2809 21 - 7455 ACTggcgccccctggtggtgg-------- i latCha1.AFYH01275859 C 0 C 0 s gasAcu1.chrIX 215856 27 - 20249479 --AGAGACACACGGTGACTATAAAGAGAC i gasAcu1.chrIX C 0 I 2 s oryLat2.chr15 304506 27 + 30000224 --TGGGGTACTTCAGCACACCGATGGGGT i oryLat2.chr15 I 8 I 2 s gadMor1.CAEA01345280 171 29 + 244 ACGGTGGTACTGTGACATTAGAGTGTGGT i gadMor1.CAEA01345280 C 0 I 2 s danRer7.chr15 561770 29 - 47442429 TCCAGAACATGATGACATCACACTATACC i danRer7.chr15 C 0 I 2 s petMar1.Contig205 27378 16 + 83855 ----AAGGCAGTTGTCAATA--------- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e fr3.HE591961 84604 246 + 93265 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-20551.000000 s mm10.chrUn_GL456394 19683 5 + 24323 ACTGT s sarHar1.chrX_GL868377_random 5965 5 - 7574 TTAGT i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303339 5 + 148809762 TCTGA i galGal4.chr2 I 2 C 0 s taeGut1.chr10 18910212 5 - 20806668 ACCGG i taeGut1.chr10 I 2 C 0 s anoCar2.chrUn_GL344973 45 5 - 14315 TCAAT i anoCar2.chrUn_GL344973 I 2 C 0 s chrPic1.JH584847 891459 5 + 2272089 TTTGG i chrPic1.JH584847 T 541 C 0 s xenTro3.GL173343 55997 5 - 535221 TATGG i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 2830 5 - 7455 gaggg i latCha1.AFYH01275859 C 0 C 0 s gasAcu1.chrIX 215885 3 - 20249479 ACA-- i gasAcu1.chrIX I 2 I 2 s oryLat2.chr15 304535 3 + 30000224 TTC-- i oryLat2.chr15 I 2 C 0 s gadMor1.CAEA01345280 202 3 + 244 TGT-- i gadMor1.CAEA01345280 I 2 C 0 s danRer7.chr15 561801 3 - 47442429 TCT-- i danRer7.chr15 I 2 I 10 s petMar1.Contig205 27394 5 + 83855 TCTGT i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498778 0 + 38656188 C e fr3.HE591961 84604 246 + 93265 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-25679.000000 s mm10.chrUn_GL456394 19688 15 + 24323 ----GACAGCACAGTGGAG s sarHar1.chrX_GL868377_random 5970 15 - 7574 ----TGCAGCACAGTAGGT i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498778 5 + 38656188 --------------TGGGG i melGal1.chr8 C 0 T 170 s galGal4.chr2 96303344 15 + 148809762 ----GATGTCAGTGTGGGG i galGal4.chr2 C 0 I 24 s taeGut1.chr10 18910217 15 - 20806668 ----GACTACAGGACGGGG i taeGut1.chr10 C 0 I 3 s anoCar2.chrUn_GL344973 50 15 - 14315 ----GACCATCTATCAGAG i anoCar2.chrUn_GL344973 C 0 I 3 s chrPic1.JH584847 891464 13 + 2272089 ----GAGGATGGGGAGG-- i chrPic1.JH584847 C 0 I 9 s xenTro3.GL173343 56002 15 - 535221 ----GCTGGCACCCTAGAA i xenTro3.GL173343 C 0 I 5 s latCha1.AFYH01275859 2835 15 - 7455 ----ggaagtGCAGTGGCT i latCha1.AFYH01275859 C 0 I 3 s gasAcu1.chrIX 215890 15 - 20249479 ----GACCACAAAGAGACA i gasAcu1.chrIX I 2 I 3 s gadMor1.CAEA01345280 205 15 + 244 ----GACATCAGACGGTGG i gadMor1.CAEA01345280 C 0 I 3 s danRer7.chr15 561814 15 - 47442429 ----Gacatcacactacac i danRer7.chr15 I 10 I 3 s petMar1.Contig205 27399 14 + 83855 GTTTAAATACGGAC----- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e fr3.HE591961 84604 246 + 93265 T e oryLat2.chr15 304538 0 + 30000224 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-33923.000000 s mm10.chrUn_GL456394 19703 13 + 24323 ---CAT-TGTCACAACA s sarHar1.chrX_GL868377_random 5985 13 - 7574 ---GGT-CTTAAGAAGA i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303383 10 + 148809762 ---TGG-CGTTGCA--- i galGal4.chr2 I 24 C 0 s taeGut1.chr10 18910235 10 - 20806668 ---CGT-CACTATA--- i taeGut1.chr10 I 3 n 3 s anoCar2.chrUn_GL344973 68 10 - 14315 ---GAT-GACCATC--- i anoCar2.chrUn_GL344973 I 3 I 2 s chrPic1.JH584847 891486 4 + 2272089 ---GGA-G--------- i chrPic1.JH584847 I 9 I 2 s xenTro3.GL173343 56022 8 - 535221 ---TGC-TGTCC----- i xenTro3.GL173343 I 5 C 0 s latCha1.AFYH01275859 2853 10 - 7455 ---TGT-TGCCCCC--- i latCha1.AFYH01275859 I 3 I 3 s gasAcu1.chrIX 215908 10 - 20249479 ---AGT-GACTACA--- i gasAcu1.chrIX I 3 C 0 s gadMor1.CAEA01345280 223 10 + 244 ---TGT-GACATTA--- i gadMor1.CAEA01345280 I 3 C 0 s danRer7.chr15 561832 11 - 47442429 ---tctagaacatg--- i danRer7.chr15 I 3 C 0 s petMar1.Contig205 27413 13 + 83855 CTTTAT-TTAGACA--- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498783 170 + 38656188 T e fr3.HE591961 84604 246 + 93265 T e oryLat2.chr15 304538 0 + 30000224 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-16429.000000 s mm10.chrUn_GL456394 19716 9 + 24323 AAGAGGAAC s sarHar1.chrX_GL868377_random 5998 7 - 7574 TGGTGG--C i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303393 9 + 148809762 ATGGGGCTC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1803755 9 - 4907541 Acggggctg i taeGut1.chr26 n 3 C 0 s anoCar2.chrUn_GL344973 80 9 - 14315 TCAGAGCTC i anoCar2.chrUn_GL344973 I 2 C 0 s chrPic1.JH584847 891492 9 + 2272089 GAGAGGCTA i chrPic1.JH584847 I 2 C 0 s xenTro3.GL173343 56030 9 - 535221 CTGTGTCAC i xenTro3.GL173343 C 0 C 0 s gasAcu1.chrIX 215918 9 - 20249479 AAGAGACAC i gasAcu1.chrIX C 0 C 0 s gadMor1.CAEA01345280 233 9 + 244 GAGCAGAGC i gadMor1.CAEA01345280 C 0 T 63 s danRer7.chr15 561843 7 - 47442429 atgaaat-- i danRer7.chr15 C 0 I 3 s petMar1.Contig205 27426 8 + 83855 ATCAAACC- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498783 170 + 38656188 T e latCha1.AFYH01275859 2863 3 - 7455 I e fr3.HE591961 84604 246 + 93265 T e oryLat2.chr15 304538 0 + 30000224 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-35077.000000 s mm10.chrUn_GL456394 19725 13 + 24323 AAGG---TCACAACAA----- s sarHar1.chrX_GL868377_random 6005 13 - 7574 AAGG---GTACAGCAC----- i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303402 13 + 148809762 TGTG---TGGCATCTG----- i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1803764 13 - 4907541 cagc---tggcagccc----- i taeGut1.chr26 C 0 C 0 s anoCar2.chrUn_GL344973 89 11 - 14315 AA-----TGACCATCT----- i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891501 11 + 2272089 AA-----TGGGAAGAA----- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 56039 16 - 535221 TATGGGCTGGCACCCT----- i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 2866 9 - 7455 -------TGGCGGGAT----- i latCha1.AFYH01275859 I 3 C 0 s gasAcu1.chrIX 215927 10 - 20249479 ------ACGGTGACTA----- i gasAcu1.chrIX C 0 I 3 s gadMor1.CAEA01345280 179 10 + 244 ------ACTGTGACAT----- i gadMor1.CAEA01345280 T 63 I 3 s danRer7.chr15 561853 10 - 47442429 ------actacaccac----- i danRer7.chr15 I 3 I 5 s petMar1.Contig205 27434 13 + 83855 --------TAGGACACATAAA i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498783 170 + 38656188 T e fr3.HE591961 84604 246 + 93265 T e oryLat2.chr15 304538 0 + 30000224 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-202869.000000 s mm10.chrUn_GL456394 19738 38 + 24323 AT-----------------------------------------------------TTGAAAACTGTGacagcacagta---ta-----gcactgtgaca s sarHar1.chrX_GL868377_random 6018 32 - 7574 AT-----------------------------------------------------GTGG----TAGGGGGTCTTTATG---TA-----GAAGGGTGG-- i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303415 17 + 148809762 AA-----------------------------------------------------TGGG----TGC----------------------CTGTGATG--- i galGal4.chr2 C 0 I 1 s taeGut1.chr26 1803777 37 - 4907541 aA--------------------A-------------------------------CCGAG----TGCGGGGCCACCAGA---TG-CTGGCCTCGATG--- i taeGut1.chr26 C 0 I 6 s anoCar2.chrUn_GL344973 100 35 - 14315 A------------------------------------------------------TCAG----AGCTCGATGACCATC---TATCAGAGCTCGATG--- i anoCar2.chrUn_GL344973 C 0 I 3 s chrPic1.JH584847 891512 28 + 2272089 AGGTGTAGA-------------A-------------------------------AAGGA----TGatggggggaca----------------------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 56055 35 - 535221 AGAACCCTG-------------T-------------------------------GCTGT----CACTGTGTCACTATAGGCTG---------------- i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 2875 35 - 7455 AAGGAACTGCAGTG-----GCTC-------------------------------ACTGG----TGCCCCCTTGTG------------------------ i latCha1.AFYH01275859 C 0 I 3 s gasAcu1.chrIX 215940 38 - 20249479 --AGAGACACACGGTGACCACAA-------------------------------AGAGA----CACACGGTGACT------------------------ i gasAcu1.chrIX I 3 C 0 s oryLat2.chr13 1904098 38 + 33409148 --AGGTCTGCAGCTTCACCCTGA-------------------------------AGGTC----TGCTCAGCAGCT------------------------ i oryLat2.chr13 n 0 C 0 s gadMor1.CAEA01345280 192 38 + 244 --AGTGTGGTACTGTGACATCAG-------------------------------ACGGT----GGTACTGTGACA------------------------ i gadMor1.CAEA01345280 I 3 C 0 s danRer7.chr15 561868 35 - 47442429 --aagatgatgacatcacactat-------------------------------a---c----cactctagaaca------------------------ i danRer7.chr15 I 5 C 0 s petMar1.Contig205 27447 55 + 83855 --------------TTGCAATCAGTACACGTGCCAATTGTaNNNNNNNNNNaCCATGGA----CTCCGTGGGA-------------------------- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498783 170 + 38656188 T e fr3.HE591961 84604 246 + 93265 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-52408.000000 s mm10.chrUn_GL456394 19776 12 + 24323 ---gcacagtggaa--------c s sarHar1.chrX_GL868377_random 6050 10 - 7574 -----ACAAGGGAA--------C i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303433 1 + 148809762 ----------------------C i galGal4.chr2 I 1 C 0 s taeGut1.chr26 1803820 20 - 4907541 ---GGACAGCTGTCGTAGTTCAC i taeGut1.chr26 I 6 C 0 s melUnd1.JH538208 1090 12 - 24570 ---GGACAGTGGTA--------C i melUnd1.JH538208 N 0 C 0 s anoCar2.chrUn_GL344973 138 3 - 14315 --------------------ATC i anoCar2.chrUn_GL344973 I 3 C 0 s chrPic1.JH584847 891540 16 + 2272089 ---gggcaggggaggaga----t i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 56090 12 - 535221 ---GCACCCTAGAA--------C i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 2913 12 - 7455 ---GGATAGGGAAC--------T i latCha1.AFYH01275859 I 3 C 0 s gasAcu1.chrIX 215978 12 - 20249479 ---ATAAAGAGACA--------C i gasAcu1.chrIX C 0 C 0 s oryLat2.chr13 1904136 2 + 33409148 -------------A--------C i oryLat2.chr13 C 0 C 0 s gadMor1.CAEA01345280 230 12 + 244 ---TTAGAGCAGAG--------C i gadMor1.CAEA01345280 C 0 n 0 s danRer7.chr15 561903 12 - 47442429 ---tgatgacatca--------c i danRer7.chr15 C 0 I 8 s petMar1.Contig205 27502 12 + 83855 ATTCAGCGGCGG----------- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498783 170 + 38656188 T e fr3.HE591961 84604 246 + 93265 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-31133.000000 s mm10.chrUn_GL456394 19788 11 + 24323 actttgaaagg--------------- s sarHar1.chrX_GL868377_random 6060 7 - 7574 AT----ACAGT--------------- i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303434 7 + 148809762 TATATGA------------------- i galGal4.chr2 C 0 I 1 s taeGut1.chr26 1803840 7 - 4907541 TGCAAGA------------------- i taeGut1.chr26 C 0 I 1 s melUnd1.JH538208 1102 7 - 24570 CCTATGG------------------- i melUnd1.JH538208 C 0 I 1 s anoCar2.chrUn_GL344973 141 7 - 14315 TATCAGA------------------- i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891556 7 + 2272089 ggtAAGA------------------- i chrPic1.JH584847 C 0 T 445 s xenTro3.GL173343 56102 7 - 535221 CCTGTGC------------------- i xenTro3.GL173343 C 0 I 4 s latCha1.AFYH01275859 2925 7 - 7455 GCAGTGG------------------- i latCha1.AFYH01275859 C 0 I 3 s gasAcu1.chrIX 215990 7 - 20249479 ACGGTGA------------------- i gasAcu1.chrIX C 0 I 4 s oryLat2.chr13 1904138 7 + 33409148 ACCCTGA------------------- i oryLat2.chr13 C 0 I 9 s danRer7.chr15 561923 1 - 47442429 ------a------------------- i danRer7.chr15 I 8 I 4 s petMar1.Contig205 27514 18 + 83855 ----TGA----GTGAAAGCAATCACG i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498783 170 + 38656188 T e gadMor1.CAEA01345280 242 0 + 244 I e fr3.HE591961 84604 246 + 93265 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-9855.000000 s mm10.chrUn_GL456394 19799 5 + 24323 --acag-t s sarHar1.chrX_GL868377_random 6067 3 - 7574 --ACA--- i sarHar1.chrX_GL868377_random C 0 C 0 s xenTro3.GL173343 56113 5 - 535221 --ACTG-T i xenTro3.GL173343 I 4 C 0 s latCha1.AFYH01275859 2935 5 - 7455 --ACTG-G i latCha1.AFYH01275859 I 3 C 0 s gasAcu1.chrIX 216001 5 - 20249479 --AAAGA- i gasAcu1.chrIX I 4 C 0 s danRer7.chr15 561928 4 - 47442429 --acaa-- i danRer7.chr15 I 4 C 0 s petMar1.Contig205 27532 5 + 83855 TCATT--- i petMar1.Contig205 C 0 C 0 e melUnd1.JH538208 1109 1 - 24570 I e anoCar2.chrUn_GL344973 148 0 - 14315 C e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498783 170 + 38656188 T e gadMor1.CAEA01345280 242 0 + 244 I e taeGut1.chr26 1803847 1 - 4907541 I e fr3.HE591961 84604 246 + 93265 T e galGal4.chr2 96303441 1 + 148809762 I e oryLat2.chr13 1904145 9 + 33409148 I e chrPic1.JH584847 891563 445 + 2272089 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-205677.000000 s mm10.chrUn_GL456394 19804 50 + 24323 gga-------gcactgtgac-----aata------------cagaggagaact-gtaacac------------------c-acagtggagcact---------- s sarHar1.chrX_GL868377_random 6070 50 - 7574 -GG-------GTCTTTGGGT-----AAAA------------TAGGGGCTAGTGAGCAGCAT------------------A-ATAGGGGctctct---------- i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303442 45 + 148809762 ----------GCTCTTTGGC-----ATCA------------CAGGGGCTCTGT-G--ATGT------------------C-ACAATGGAACTCT---------- i galGal4.chr2 I 1 C 0 s taeGut1.chr26 1803848 57 - 4907541 ----------ACAACACGGC-----ATCAAAATGGGGGATGCAGGGCGACAGT-A--GGGT------------------G-GCAATGGCACCTG---------- i taeGut1.chr26 I 1 C 0 s melUnd1.JH538208 1110 55 - 24570 ----------GCACAGTGAT-----ACCC---TATGGGGCACAGTGATACCCT-AT-GGGG------------------A-GCTATGGCACCCT---------- i melUnd1.JH538208 I 1 C 0 s anoCar2.chrUn_GL344973 148 57 - 14315 ----------GCTCAATGACCATCTATCA-------GAGCTCAATGACCATCT-ATCAGAG------------------C-TCGATGACCGTCT---------- i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891118 55 + 2272089 --ATAATATAGTGCTAGGAC-----ATTG------------CAAGGCAATGCA-ATGACAT------------------C-ATAATGCTGCACT---------- i chrPic1.JH584847 T 445 C 0 s xenTro3.GL173343 56118 50 - 535221 GTA-------ACCCTGACCT-----GGCA------------CCTTAGAACCCT-GTGCTGG------------------C-ATTGTGTCACCTT---------- i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 2940 47 - 7455 TGC-------CCCTTGTGGC-----GGGA------------TAGGGAA---CT-GCAGTGG------------------C-TCACTggtgcccc---------- i latCha1.AFYH01275859 C 0 C 0 s fr3.HE593820 481 30 + 8190 -------------------------------------gcaacaagG------T-AGAAACA------------------T-ACACGA-GAGCAG---------- i fr3.HE593820 n 246 I 24 s gasAcu1.chrIX 216006 37 - 20249479 -------------------------------------GACACACGGTGACTAT-AAAGAGA------------------C-ACACGGTGACCAC---------- i gasAcu1.chrIX C 0 T 29 s oryLat2.chr13 1904154 31 + 33409148 -------------------------------------GCTACACCC------T-GAAGATC------------------T-GCAGCTTCACCCT---------- i oryLat2.chr13 I 9 I 13 s danRer7.chr15 561932 25 - 47442429 --------------------------------------------------cat-gatgaca------------------tcacactacacccct---------- i danRer7.chr15 C 0 I 10 s petMar1.Contig205 27537 68 + 83855 ----------------------------------GGTGACTTGATGGAGATAT-GCAAGAGGCAATCAGATACCTTATCT-GCAATGCCGCGCATCTTTCTCGT i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498783 170 + 38656188 T e gadMor1.CAEA01345280 242 0 + 244 I e ornAna1.Contig11639 17087 0 + 23295 I a score=-31374.000000 s mm10.chrUn_GL456394 19854 16 + 24323 gtgacaacacatttga s sarHar1.chrX_GL868377_random 6120 13 - 7574 ttgtaaa---atgggg i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303487 16 + 148809762 GTGACATCACAATGGG i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1803905 1 - 4907541 G--------------- i taeGut1.chr26 C 0 I 7 s melUnd1.JH538208 1165 5 - 24570 ATGGG----------- i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 205 16 - 14315 ATCAGAGCTCGATGAC i anoCar2.chrUn_GL344973 C 0 I 11 s chrPic1.JH584847 891173 16 + 2272089 ATGACATCAAAATACA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 56168 16 - 535221 GGGCTGGCACCCTAGA i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 2987 16 - 7455 ctggtggtgggatAGG i latCha1.AFYH01275859 C 0 C 0 s fr3.HE593820 535 5 + 8190 -----------GTAGC i fr3.HE593820 I 24 I 3 s oryLat2.chr13 1904198 5 + 33409148 -----------GCAGC i oryLat2.chr13 I 13 I 11 s petMar1.Contig205 27605 16 + 83855 GAAACAATGCAAGTGA i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr15 561957 10 - 47442429 I e melGal1.chr8 3498783 170 + 38656188 T e gadMor1.CAEA01345280 242 0 + 244 I e gasAcu1.chrIX 216043 29 - 20249479 T e ornAna1.Contig11639 17087 0 + 23295 I a score=-80549.000000 s mm10.chrUn_GL456394 19870 29 + 24323 ----gcacggtgacaccacagt---------------------ggaacacagtG s sarHar1.chrX_GL868377_random 6133 50 - 7574 ----ccaagggaacagcacagtagggggtctttcATTAGAAGAGGGGCTAGGGA i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498613 29 + 38656188 ----GCTCTGTGACATCACAAT---------------------GCGGCTCTGTG i melGal1.chr8 T 170 C 0 s galGal4.chr2 96303503 28 + 148809762 -----GTCTGTGACATCACAAT---------------------GGATCACCGTG i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1803913 28 - 4907541 ----AACCcagggtgacacagg---------------------gtgacacag-g i taeGut1.chr26 I 7 C 0 s melUnd1.JH538208 1170 28 - 24570 ----GCACAGCGATGTC-CTGT---------------------GGGGCACAGTG i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 232 29 - 14315 ----GCTCAATGACCGTCTATC---------------------AGAGCTCAATG i anoCar2.chrUn_GL344973 I 11 C 0 s chrPic1.JH584847 891189 29 + 2272089 ----GTGCTATGATATCACAAT---------------------GTAACACAGTC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 56184 29 - 535221 ----ACCCTGTGCTGTCACTGT---------------------GTCACCTTGGG i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 3003 28 - 7455 ----GAACTGCAGGGGCTCACT---------------------GGTGCCCC-TG i latCha1.AFYH01275859 C 0 C 0 s fr3.HE593820 543 24 + 8190 ----GGGGAGTATTATTGTAGC---------------------GGAGG-----G i fr3.HE593820 I 3 I 7 s gasAcu1.chrVI 1392827 10 - 17083675 ---------GTGACTTTGT----------------------------------- i gasAcu1.chrVI T 820 I 5 s oryLat2.chr13 1904214 27 + 33409148 ----GGTCTGCAGCTTCACCCT---------------------GAAGG--TCTG i oryLat2.chr13 I 11 I 7 s danRer7.chr15 561967 24 - 47442429 ---------atgacatcacact---------------------acaccacTCTA i danRer7.chr15 I 10 I 12 s petMar1.Contig205 27621 23 + 83855 AAACGGACTCTTGCACCCACGT---------------------G---------- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.CAEA01345280 242 0 + 244 I e ornAna1.Contig11639 17087 0 + 23295 I a score=-48102.000000 s mm10.chrUn_GL456394 19899 20 + 24323 ACACCAGAGT--GGAGCACTGT s sarHar1.chrX_GL868377_random 6183 22 - 7574 ACAGTATAATGGGGGGTCTTTT i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498642 19 + 38656188 ATGTCATAAT---GGGCTCTGT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96303531 20 + 148809762 ATTCCATAAT--GGGGTTCTGT i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1803941 12 - 4907541 gtgacacagg----------gt i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1198 19 - 24570 ATACCATATG---GGGCACTGT i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 261 18 - 14315 A--CCACCAG--AGAGCTCAAT i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891218 20 + 2272089 ATGTTACAAT--GCAGcactat i chrPic1.JH584847 C 0 T 214 s xenTro3.GL173343 56213 20 - 535221 CTGGCAGCCT--AGAACCCTGT i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 3031 12 - 7455 GTGGCGGGAT--GG-------- i latCha1.AFYH01275859 C 0 C 0 s fr3.HE593820 574 20 + 8190 ATCGTAGCGG--AGGAGAGTAT i fr3.HE593820 I 7 C 0 s gasAcu1.chrVI 1392842 20 - 17083675 AACACGATGG--CGGGGGCTGT i gasAcu1.chrVI I 5 C 0 s oryLat2.chr13 1904248 15 + 33409148 ACCCTGAAGA--T-----CTGC i oryLat2.chr13 I 7 C 0 s gadMor1.HE569363 365172 20 + 3914096 ATACTAGTGT--GTGGCCCCGC i gadMor1.HE569363 n 0 C 0 s danRer7.chr15 562003 20 - 47442429 atcacactat--accactctag i danRer7.chr15 I 12 C 0 s petMar1.Contig205 27644 14 + 83855 ------ATGT--GTGTCACTGT i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e ornAna1.Contig11639 17087 0 + 23295 I a score=-11204.000000 s mm10.chrUn_GL456394 19919 3 + 24323 GGA s sarHar1.chrX_GL868377_random 6205 3 - 7574 GGT i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498661 2 + 38656188 -GA i melGal1.chr8 C 0 I 172 s galGal4.chr2 96303551 2 + 148809762 -GA i galGal4.chr2 C 0 I 1 s taeGut1.chr26 1803953 2 - 4907541 -ga i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1217 2 - 24570 -GA i melUnd1.JH538208 C 0 I 1 s anoCar2.chrUn_GL344973 279 2 - 14315 -GA i anoCar2.chrUn_GL344973 C 0 I 1 s chrPic1.JH584847 891024 2 + 2272089 -GA i chrPic1.JH584847 T 214 I 1 s xenTro3.GL173343 56233 2 - 535221 -GC i xenTro3.GL173343 C 0 I 15 s latCha1.AFYH01275859 3043 3 - 7455 GGA i latCha1.AFYH01275859 C 0 C 0 s fr3.HE593820 594 1 + 8190 --T i fr3.HE593820 C 0 I 250 s gasAcu1.chrVI 1392862 1 - 17083675 --G i gasAcu1.chrVI C 0 I 2 s oryLat2.chr13 1904263 1 + 33409148 --A i oryLat2.chr13 C 0 I 2 s gadMor1.HE569363 365192 1 + 3914096 --G i gadMor1.HE569363 C 0 I 2 s danRer7.chr15 562023 1 - 47442429 --a i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27658 3 + 83855 GGA i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e ornAna1.Contig11639 17087 0 + 23295 I a score=-84798.000000 s mm10.chrUn_GL456394 19922 31 + 24323 ATCACAGTGGAGCACTGTGACAGCAC-----AGTGG s sarHar1.chrX_GL868377_random 6208 31 - 7574 AGAAAAAGGATGCAAAGGAACAGCAC-----AGTAG i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303554 31 + 148809762 GTCACAATGGAGCACTGTTATTCCAT-----AATGC i galGal4.chr2 I 1 C 0 s taeGut1.chr26 1803955 21 - 4907541 --cacagggtgacacaggc------t-----aa--c i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1220 29 - 24570 -ACCCTATGGGGCACAGTGATGTCCT-----AT-GG i melUnd1.JH538208 I 1 C 0 s anoCar2.chrUn_GL344973 282 31 - 14315 TACCTATCAGAGCTCGATGACCGTCT-----ATCGG i anoCar2.chrUn_GL344973 I 1 C 0 s chrPic1.JH584847 891027 31 + 2272089 ATCACAATACAGCACTGTGACATCAT-----GAGGA i chrPic1.JH584847 I 1 C 0 s xenTro3.GL173343 56250 31 - 535221 AGCACCCTAGAACCCTGTGCTGTCAC-----TATGG i xenTro3.GL173343 I 15 C 0 s latCha1.AFYH01275859 3046 31 - 7455 ACTGTAGTGGCTCACTGTTGCCCCCT-----GGTGG i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84358 31 + 93265 ATCCCCTTCGTGCACTGAAACCTCCC-----AAACG i fr3.HE591961 T 246 C 0 s gasAcu1.chrVI 1392865 10 - 17083675 ---------------AGAGA-----------GGAGG i gasAcu1.chrVI I 2 C 0 s oryLat2.chr13 1904266 36 + 33409148 TTCACCCTGAAGATCTGCAGCTTCACCCTGAAAATC i oryLat2.chr13 I 2 C 0 s gadMor1.HE569363 365195 9 + 3914096 ----------------------GCCC-----GGAGC i gadMor1.HE569363 I 2 C 0 s danRer7.chr15 562024 22 - 47442429 ---------agatgatgacatcacac-----tactc i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27661 24 + 83855 -AGCGGATGGCCAATTTTGTCCGCA----------- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498663 172 + 38656188 I e ornAna1.Contig11639 17087 0 + 23295 I a score=-95.000000 s mm10.chrUn_GL456394 19953 5 + 24323 AGCAT s sarHar1.chrX_GL868377_random 6239 5 - 7574 GAGAT i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303585 5 + 148809762 GGCTC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1803976 5 - 4907541 agcat i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1249 5 - 24570 GGCAC i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 313 5 - 14315 AGCTC i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891058 5 + 2272089 AGCAC i chrPic1.JH584847 C 0 C 0 s fr3.HE591961 84389 5 + 93265 TGCAC i fr3.HE591961 C 0 C 0 s gasAcu1.chrVI 1392875 5 - 17083675 TGCAC i gasAcu1.chrVI C 0 C 0 s oryLat2.chr13 1904302 5 + 33409148 TGCTC i oryLat2.chr13 C 0 C 0 s gadMor1.HE569363 365204 5 + 3914096 CAGGG i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562046 5 - 47442429 cactc i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27685 2 + 83855 ---AT i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498663 172 + 38656188 I e latCha1.AFYH01275859 3077 0 - 7455 C e xenTro3.GL173343 56281 0 - 535221 C e ornAna1.Contig11639 17087 0 + 23295 I a score=-207453.000000 s mm10.chrUn_GL456394 19958 31 + 24323 TGT------CACAA----------------------C---AAAGAGGA---ACAAGGTCACAAC-A s sarHar1.chrX_GL868377_random 6244 33 - 7574 CATT----CCATAG----------------------A---Aggggggg---ACCCGGAATCAGC-A i sarHar1.chrX_GL868377_random C 0 C 0 s galGal4.chr2 96303590 31 + 148809762 TGT------GATGA----------------------C---TCAGTGGT---GTACGCCTATTCCA- i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1803981 28 - 4907541 tgt------gacag---------------------------cagtggc---agagcaggaTGAC-- i taeGut1.chr26 C 0 I 9 s melUnd1.JH538208 1254 29 - 24570 AGT------GATAC----------------------C----CTATGGG---GCACAGCGATACC-- i melUnd1.JH538208 C 0 I 3 s anoCar2.chrUn_GL344973 318 31 - 14315 GAT------GACCA----------------------TCTATCAGAGCT---CAATGACCATC---- i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891063 13 + 2272089 ACT------AACAT----------------------C---ACAA---------------------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173394 453515 31 - 460121 ---TGTCCCAGTAA----------------------C---GCACTGTA---GTGCCACATTG---- i xenTro3.GL173394 n 0 C 0 s latCha1.AFYH01275859 3077 23 - 7455 -----------TAA----------------------T---ATAAGGAA---CTGCAGCAGCT---- i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84394 31 + 93265 ------TGAAACCT----------------------C---CCAAACGTGCACTGAAACATCC---- i fr3.HE591961 C 0 C 0 s gasAcu1.chrVI 1392880 23 - 17083675 ------TGTGA-----------------------------CAGGAGGTGCACTGTGAC-------- i gasAcu1.chrVI C 0 I 21 s oryLat2.chr13 1904307 31 + 33409148 ------AGCAGCTT-------------------CACC---CTGAAGGT---CTGCAGCTTCA---- i oryLat2.chr13 C 0 C 0 s gadMor1.HE569363 365209 31 + 3914096 ------TGCAGCTT-------------------TATC---TTAACGAG---ATGCAGCATCA---- i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562051 49 - 47442429 ------tagaacaagatgacatcacactatac-cact---ctagaaaa---tgatgacatca---- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27687 26 + 83855 ---------------------------TATTTAATCC---AAAAGCAA---CTGCAACG------- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498663 172 + 38656188 I e ornAna1.Contig11639 17087 0 + 23295 I a score=-53015.000000 s mm10.chrUn_GL456394 19989 13 + 24323 AATTTGAACACTG s sarHar1.chrX_GL868377_random 6277 13 - 7574 TAGGTAAGGGGTC i sarHar1.chrX_GL868377_random C 0 C 0 s melGal1.chr8 3498835 11 + 38656188 --ATTTTGGGCTC i melGal1.chr8 I 172 I 2 s galGal4.chr2 96303621 11 + 148809762 --AAGTGGGCCTC i galGal4.chr2 C 0 I 2 s taeGut1.chr26 1804018 11 - 4907541 --ATACAGGGTAA i taeGut1.chr26 I 9 I 5 s melUnd1.JH538208 1286 8 - 24570 -----TGGGGCAC i melUnd1.JH538208 I 3 I 1 s anoCar2.chrUn_GL344973 349 11 - 14315 --TATCAGAGCTC i anoCar2.chrUn_GL344973 C 0 I 2 s chrPic1.JH584847 891076 6 + 2272089 -----TACAGC-- i chrPic1.JH584847 C 0 I 169 s xenTro3.GL173394 453546 3 - 460121 --------AGT-- i xenTro3.GL173394 C 0 C 0 s latCha1.AFYH01275859 3100 11 - 7455 --CATTGGCATCC i latCha1.AFYH01275859 C 0 I 2 s fr3.HE591961 84425 2 + 93265 -----------CC i fr3.HE591961 C 0 I 32 s oryLat2.chr13 1904338 2 + 33409148 -----------CC i oryLat2.chr13 C 0 I 40 s gadMor1.HE569363 365240 2 + 3914096 -----------TG i gadMor1.HE569363 C 0 I 37 s danRer7.chr15 562100 2 - 47442429 -----------ca i danRer7.chr15 C 0 I 34 s petMar1.Contig205 27713 13 + 83855 ACATTGAGATCTC i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gasAcu1.chrVI 1392903 21 - 17083675 I e ornAna1.Contig11639 17087 0 + 23295 I a score=-302917.000000 s mm10.chrUn_GL456394 20002 88 + 24323 -------------TTacagcacagtatagcacggtgacaccac--agtgga------------g--cattgtgacagcacag----tgga---------gcattgtgacaccacag-------gggagcacttggac s sarHar1.chrX_GL868377_random 6290 90 - 7574 -------------ATTAggtagaaggagagaagggaaccCCAC--AGTAGG------------GGTTCTTTTGGTAG--AAG----GGGG---------GCCAAggaacagcacag-----tagggggtctttGGGT i sarHar1.chrX_GL868377_random C 0 C 0 s ornAna1.Contig28798 9441 88 + 11539 -------------TCGCAGCA-AGAGGGGCACCATCACAGCAC--AGAGGG------------A--CACCATTGCAGCATGG----AGGG---------ACACCAACACAGCATAG-----ACGGGCACGACTGCT- i ornAna1.Contig28798 n 0 C 0 s melGal1.chr8 3498848 33 + 38656188 -------------TCACAGTACAAAGGGGCTCAGTTACATCAT--AAT----------------------------------------------------------------------------------------- i melGal1.chr8 I 2 C 0 s galGal4.chr2 96303634 74 + 148809762 -------------TGACTTCACGATAGGACTCTGTGATGTCAC--AATGCA------------A--CTCCATGTCCTCACAA----TGCG---------GCTGTGAGGCATCAAAG--------------------- i galGal4.chr2 I 2 C 0 s taeGut1.chr26 1804034 72 - 4907541 -------------GGGTGACATAGTGGCACATGGTGATA--GC--AATGTG------------A--CAGCAGTGTGACACAG----GGTG---------ACAATGGGGCAACACAA--------------------- i taeGut1.chr26 I 5 C 0 s melUnd1.JH538208 1295 89 - 24570 -------------GCGATACCCTATGGCGCACTGTGATACCCT--ATGGGG-----------CA--CAGCGGTGCCCTATGA----GACACCATGGCACCCTATGGGGCACTATGGCACTC---------------- i melUnd1.JH538208 I 1 C 0 s anoCar2.chrUn_GL344973 362 74 - 14315 -------------TGACCGTCTATCAGAGCTCAATGACCGTCT--ATCAGA------------G--CTCAATGACCGTCTAT----CAGA---------GCTCAATGACCACCAGA--------------------- i anoCar2.chrUn_GL344973 I 2 C 0 s xenTro3.GL173394 453549 80 - 460121 -------------------CCCAGTAACGCACTGTAGTGCCAC--ATTGAGTCCCAGTAACGCA--CTGTAGTGCCACATTG----AGTC---------CCAGTAACGCACTGTAG--------------------- i xenTro3.GL173394 C 0 I 2 s latCha1.AFYH01275859 3113 74 - 7455 -------------TTGTGGCGGGAAGGGGAACTGCAGTGGCTC--ACTGGT------------G--CCCCCTGGTGGCGGGA----GGGG---------GAACTGCAGCGGCTCAC--------------------- i latCha1.AFYH01275859 I 2 I 7 s fr3.HE591961 84459 67 + 93265 -------------AAACCTCCCAAACGTGCACTGAAACATCCC--CTTCGT------------G--CACTGAAACCTCCCAA----ACGT---------GCACTGAAAC---------------------------- i fr3.HE591961 I 32 C 0 s gasAcu1.chrVI 1392924 67 - 17083675 -------------TGACAGAGAGGAGGTGCACTGTGACAG------GAGGT------------G--CACTGTGACTGACAGAGAGGAGGT---------GCACTGTGAC---------------------------- i gasAcu1.chrVI I 21 C 0 s oryLat2.chr13 1904380 69 + 33409148 -------------CTACACCCTGAAGATCTGCAGCTACACCCTGAAGATCT------------G--CAGCTTCACCTTGAAG----ATCT---------GCAGCTTCAC---------------------------- i oryLat2.chr13 I 40 C 0 s gadMor1.HE569363 365279 69 + 3914096 -------------CGTCATGGTAACGAGGTGCAGCATCATGTTAACGAGGT------------G--CAGCATCATGTAAACA----AGGT---------GCAATATCTT---------------------------- i gadMor1.HE569363 I 37 C 0 s danRer7.chr15 562136 66 - 47442429 -------------taccacTCTAGAAGATGATGacatcacact---acacc------------a--ctccagaacatgatga----catc---------acactatacc---------------------------- i danRer7.chr15 I 34 C 0 s petMar1.Contig205 27726 69 + 83855 TCACACACTGGTGGGACTTTCCAGACGTGCATTGCTGTAGCGC--AGCAGT--------TCTCA--GAGTGCGGTCTCCAG-------------------------------------------------------- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e chrPic1.JH584847 891082 169 + 2272089 I a score=-1308.000000 s mm10.chrUn_GL456394 20090 1 + 24323 a s sarHar1.chrX_GL868377_random 6380 1 - 7574 A i sarHar1.chrX_GL868377_random C 0 N 0 s fr3.HE591961 84526 1 + 93265 C i fr3.HE591961 C 0 C 0 s gasAcu1.chrVI 1392991 1 - 17083675 T i gasAcu1.chrVI C 0 C 0 s oryLat2.chr13 1904449 1 + 33409148 C i oryLat2.chr13 C 0 C 0 s gadMor1.HE569363 365348 1 + 3914096 G i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562202 1 - 47442429 a i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27795 1 + 83855 A i petMar1.Contig205 C 0 C 0 e melUnd1.JH538208 1384 0 - 24570 C e anoCar2.chrUn_GL344973 436 0 - 14315 C e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498881 0 + 38656188 C e taeGut1.chr26 1804106 0 - 4907541 C e latCha1.AFYH01275859 3187 7 - 7455 I e xenTro3.GL173394 453629 2 - 460121 I e galGal4.chr2 96303708 0 + 148809762 C e chrPic1.JH584847 891082 169 + 2272089 I e ornAna1.Contig28798 9529 0 + 11539 C a score=-16873.000000 s mm10.chrUn_GL456394 20091 7 + 24323 acacatg-- s ornAna1.Contig28798 9529 7 + 11539 GCAAGAG-- i ornAna1.Contig28798 C 0 C 0 s galGal4.chr2 96303708 2 + 148809762 -----TG-- i galGal4.chr2 C 0 C 0 s melUnd1.JH538208 1384 4 - 24570 ---TATG-- i melUnd1.JH538208 C 0 C 0 s xenTro3.GL173394 453631 7 - 460121 CCACATT-- i xenTro3.GL173394 I 2 C 0 s fr3.HE591961 84527 2 + 93265 -----TC-- i fr3.HE591961 C 0 T 527 s gasAcu1.chrVI 1392992 2 - 17083675 -----GA-- i gasAcu1.chrVI C 0 I 10 s oryLat2.chr13 1904450 2 + 33409148 -----CT-- i oryLat2.chr13 C 0 C 0 s gadMor1.HE569363 365349 2 + 3914096 -----TT-- i gadMor1.HE569363 C 0 I 11 s danRer7.chr15 562203 2 - 47442429 -----ct-- i danRer7.chr15 C 0 I 3 s petMar1.Contig205 27796 7 + 83855 --ACACCAG i petMar1.Contig205 C 0 C 0 e anoCar2.chrUn_GL344973 436 0 - 14315 C e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498881 0 + 38656188 C e taeGut1.chr26 1804106 0 - 4907541 C e latCha1.AFYH01275859 3187 7 - 7455 I e chrPic1.JH584847 891082 169 + 2272089 I a score=-1385.000000 s mm10.chrUn_GL456394 20098 12 + 24323 gagtactgtgac s ornAna1.Contig28798 9536 12 + 11539 TGGCACCATCAC i ornAna1.Contig28798 C 0 C 0 s melGal1.chr8 3498881 12 + 38656188 GGGTTCTGTGAT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96303710 12 + 148809762 GAGGCCTTTGAT i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804106 12 - 4907541 GTTGCCAACAGG i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1388 12 - 24570 GGGCACTGTGAT i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 436 12 - 14315 GAGCTCAATGAC i anoCar2.chrUn_GL344973 C 0 C 0 s xenTro3.GL173394 453638 12 - 460121 GAGTCCCAGTAA i xenTro3.GL173394 C 0 C 0 s fr3.HE593835 6775 12 + 8154 TAGCACGGTGCC i fr3.HE593835 n 527 I 20 s gasAcu1.chrVI 1393004 12 - 17083675 GTGCACTGTGAC i gasAcu1.chrVI I 10 I 652 s oryLat2.chr13 1904452 12 + 33409148 GAAGATCTTCTC i oryLat2.chr13 C 0 I 6 s gadMor1.HE569363 365362 10 + 3914096 --GAATCATGTA i gadMor1.HE569363 I 11 I 11 s danRer7.chr15 562208 12 - 47442429 gaacatgatgac i danRer7.chr15 I 3 I 10 s petMar1.Contig205 27803 11 + 83855 -CGGTCTGTGAC i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.AFYH01275859 3187 7 - 7455 I e chrPic1.JH584847 891082 169 + 2272089 I a score=-126132.000000 s mm10.chrUn_GL456394 20110 26 + 24323 aacacag------------------ttg-agcacggtgaaa--ccac-------- s ornAna1.Contig28798 9548 27 + 11539 AATAAGG------------------GGGCACCACTGCAACA--TTAC-------- i ornAna1.Contig28798 C 0 C 0 s melGal1.chr8 3498893 11 + 38656188 GTCACAA------------------------------------TTGT-------- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96303722 36 + 148809762 GTCACAGATAATCTCTGG-------CAA-CA--CAATGGGT-CTTTT-------- i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804118 23 - 4907541 ATTACAC------------------CAA-CAACCAAGG-----TGTT-------- i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1400 34 - 24570 ACCCTAT---------GGGGAGCCATGG-CACCCAATGTG---GCAC-------- i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 448 26 - 14315 TACCTAT------------------CAG-AGCTCGATGACT--ATCT-------- i anoCar2.chrUn_GL344973 C 0 C 0 s xenTro3.GL173394 453650 26 - 460121 CGCACTG------------------TAG-TGCCACATTGAG--TCCC-------- i xenTro3.GL173394 C 0 C 0 s fr3.HE593835 6807 5 + 8154 GTCGC-------------------------------------------------- i fr3.HE593835 I 20 C 0 s oryLat2.chr13 1904470 5 + 33409148 TTCAC-------------------------------------------------- i oryLat2.chr13 I 6 C 0 s gadMor1.HE569363 365383 5 + 3914096 AGCAT-------------------------------------------------- i gadMor1.HE569363 I 11 C 0 s danRer7.chr15 562230 5 - 47442429 accac-------------------------------------------------- i danRer7.chr15 I 10 C 0 s petMar1.Contig205 27814 26 + 83855 -----------------------------AGTCCACTGGGGGACTGTGACAGTCC i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.AFYH01275859 3187 7 - 7455 I e gasAcu1.chrVI 1393016 652 - 17083675 I e chrPic1.JH584847 891082 169 + 2272089 I a score=-81687.000000 s mm10.chrUn_GL456394 20136 32 + 24323 agtgg-----------a----acacagtgacaccacagtggagaact s ornAna1.Contig28798 9575 32 + 11539 AGCAT-----------G----GAGAGGTACCACTGCAGCACAGAGAT i ornAna1.Contig28798 C 0 C 0 s melGal1.chr8 3498904 5 + 38656188 GGTGA------------------------------------------ i melGal1.chr8 C 0 T 286 s galGal4.chr2 96303758 43 + 148809762 AGTGGCGTCCTAATGGA----GCTCAGTGACGTGTGAACAGGGCTGC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804141 27 - 4907541 GGTGT-----------A----ACTCAGTTGCCAGCAGCCAGG----- i taeGut1.chr26 C 0 I 14 s melUnd1.JH538208 1434 24 - 24570 AGTGA-----------T----ACCCTATGGGGTGCACTG-------- i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 474 32 - 14315 ATCAG-----------A----GCTCGATGACCATCTATCAGAGCTCA i anoCar2.chrUn_GL344973 C 0 C 0 s xenTro3.GL173394 453676 23 - 460121 AGTAA-----------C----GCACTGTAGTGCCACAT--------- i xenTro3.GL173394 C 0 n 0 s latCha1.JH128489 44519 25 + 444037 AGCGG-----------A----GTATAATAGTGCAGCGGAG------- i latCha1.JH128489 I 51 C 0 s fr3.HE593835 6812 32 + 8154 CGCGT-----------A----GCACGGTCCCGTCGCCGCGTAGCCTG i fr3.HE593835 C 0 C 0 s oryLat2.chr13 1904475 32 + 33409148 CCTGA-----------A----GATCTGCAGCTTCACCTTGAAGATCT i oryLat2.chr13 C 0 C 0 s gadMor1.HE569363 365388 25 + 3914096 CTTGT-----------ATAATGAGTTGCAGCATAAT----------- i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562235 24 - 47442429 tctga-----------a----acatgatgacatcacact-------- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27840 32 + 83855 ACTGG-----------G----GGACTGTGACAGTCCACTGGGGGACT i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gasAcu1.chrVI 1393016 652 - 17083675 I e chrPic1.JH584847 891082 169 + 2272089 I a score=3577.000000 s mm10.chrUn_GL456394 20168 2 + 24323 gt s ornAna1.Contig28798 9607 2 + 11539 GT i ornAna1.Contig28798 C 0 C 0 s galGal4.chr2 96303801 2 + 148809762 GT i galGal4.chr2 C 0 C 0 s anoCar2.chrUn_GL344973 506 2 - 14315 AT i anoCar2.chrUn_GL344973 C 0 C 0 s fr3.HE593835 6844 2 + 8154 GT i fr3.HE593835 C 0 C 0 s gasAcu1.chrIX 216014 2 - 20249479 GT i gasAcu1.chrIX T 29 C 0 s oryLat2.chr13 1904507 2 + 33409148 GC i oryLat2.chr13 C 0 C 0 s petMar1.Contig205 27872 2 + 83855 GT i petMar1.Contig205 C 0 C 0 e melUnd1.JH538208 1458 0 - 24570 C e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr15 562259 0 - 47442429 C e melGal1.chr8 3498909 286 + 38656188 T e gadMor1.HE569363 365413 0 + 3914096 C e taeGut1.chr26 1804168 14 - 4907541 I e latCha1.JH128489 44544 0 + 444037 C e xenTro3.GL173394 453699 0 - 460121 I e chrPic1.JH584847 891082 169 + 2272089 I a score=-1797.000000 s mm10.chrUn_GL456394 20170 1 + 24323 -g s ornAna1.Contig28798 9609 1 + 11539 -G i ornAna1.Contig28798 C 0 C 0 s galGal4.chr2 96303803 1 + 148809762 -G i galGal4.chr2 C 0 I 45 s anoCar2.chrUn_GL344973 508 1 - 14315 -G i anoCar2.chrUn_GL344973 C 0 I 21 s xenTro3.GL173343 56281 1 - 535221 -G i xenTro3.GL173343 C 0 C 0 s fr3.HE593835 6846 1 + 8154 -G i fr3.HE593835 C 0 C 0 s gasAcu1.chrIX 216016 1 - 20249479 -G i gasAcu1.chrIX C 0 C 0 s oryLat2.chr13 1904509 1 + 33409148 -A i oryLat2.chr13 C 0 C 0 s petMar1.Contig205 27874 1 + 83855 C- i petMar1.Contig205 C 0 C 0 e melUnd1.JH538208 1458 0 - 24570 C e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr15 562259 0 - 47442429 C e melGal1.chr8 3498909 286 + 38656188 T e gadMor1.HE569363 365413 0 + 3914096 C e taeGut1.chr26 1804168 14 - 4907541 I e latCha1.JH128489 44544 0 + 444037 C e chrPic1.JH584847 891082 169 + 2272089 I a score=-41239.000000 s mm10.chrUn_GL456394 20171 22 + 24323 acagcacagcagag-----cac----TGTGA s ornAna1.Contig28798 9610 13 + 11539 TCAGTACAGCACA------------------ i ornAna1.Contig28798 C 0 C 0 s galGal4.chr2 96303849 21 + 148809762 ACATCACAATGGG------GAC----TGTGA i galGal4.chr2 I 45 C 0 s taeGut1.chr26 1804182 21 - 4907541 -----ACAGTAGGT-----GACACAAAGTGA i taeGut1.chr26 I 14 C 0 s melUnd1.JH538208 1458 21 - 24570 ACAC-TCTATGGGG-----CAC----AACGG i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 530 21 - 14315 CCAT-CTATCAGAG-----CTC----AATGC i anoCar2.chrUn_GL344973 I 21 C 0 s xenTro3.GL173343 56282 22 - 535221 CTGGCACCCTAGAA-----CCC----TGTGC i xenTro3.GL173343 C 0 C 0 s latCha1.JH128489 44544 21 + 444037 -TAATATAGCAGAG-----TAT----AATAA i latCha1.JH128489 C 0 C 0 s fr3.HE593835 6847 22 + 8154 CCGTCGCCGCGTAG-----CAC----GGTGC i fr3.HE593835 C 0 C 0 s gasAcu1.chrIX 216017 22 - 20249479 ACTATAAAGAGACA-----CAC----GGTGA i gasAcu1.chrIX C 0 C 0 s oryLat2.chr13 1904510 27 + 33409148 GCTTCACCCTGAAGATCTTCTC----AGCAG i oryLat2.chr13 C 0 C 0 s gadMor1.HE569363 365413 19 + 3914096 ---TTATAATGAGA-----TGC----AGCAC i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562259 22 - 47442429 acaccactccagaa-----cat----gatga i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27875 22 + 83855 ACAGATCACTGGGG-----GAC----TGTGA i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498909 286 + 38656188 T e chrPic1.JH584847 891082 169 + 2272089 I a score=-73313.000000 s mm10.chrUn_GL456394 20193 14 + 24323 CATCA-----GAGTGGAGT s ornAna1.Contig28798 9623 7 + 11539 -----------AATGG-GC i ornAna1.Contig28798 C 0 C 0 s galGal4.chr2 96303870 14 + 148809762 TGTCA-----CAATGGAGC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804203 14 - 4907541 CAAGA-----CAGTGATGC i taeGut1.chr26 C 0 I 10 s melUnd1.JH538208 1479 13 - 24570 CATCT-----TA-TGGGGC i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 551 4 - 14315 CATC--------------- i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891251 18 + 2272089 catCAA-GTTTAgtatggt i chrPic1.JH584847 I 169 I 8 s xenTro3.GL173343 56304 9 - 535221 -------TTTCACTGT--- i xenTro3.GL173343 C 0 C 0 s latCha1.JH128489 44565 14 + 444037 -----TAGTGCAGTGGAGT i latCha1.JH128489 C 0 I 10 s fr3.HE593835 6869 14 + 8154 -----CGTCGCCGCGTAGC i fr3.HE593835 C 0 C 0 s gasAcu1.chrIX 216039 14 - 20249479 -----CCACAAAGAGACAC i gasAcu1.chrIX C 0 C 0 s oryLat2.chr13 1904537 14 + 33409148 -----CTTCACCCTGAAGA i oryLat2.chr13 C 0 C 0 s gadMor1.HE569363 365432 14 + 3914096 -----CAAGTTAACGAAGT i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562281 12 - 47442429 -----catcacactata-- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27897 14 + 83855 -----CAGATCACTCGGGG i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498909 286 + 38656188 T a score=-203614.000000 s mm10.chrUn_GL456394 20207 43 + 24323 AGTGTG--------ACAGCACAGTGGAGAAG---TAT-GAC-ACCACAGTGTAT-----CA-- s ornAna1.Contig28798 9630 43 + 11539 GGCATT--------ACAGCGTGGAGGGGAAT---TAT-CAC-ACCACAGATGGG-----CA-- i ornAna1.Contig28798 C 0 C 0 s melGal1.chr3 265901 37 - 100405168 ATGGTG--------ACCCCCAAACTGAA----------GCA-ACCAAACCGAAG-----CC-- i melGal1.chr3 n 286 C 0 s galGal4.chr2 96303884 43 + 148809762 ACTGTG--------ATTCCAGAATGGGGCTC---TGT-GTT-GTCACAATGGGG-----CT-- i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804227 28 - 4907541 AGGGTG--------ACAGCAGGATGACA----------GTA-GC---------A-----CC-- i taeGut1.chr26 I 10 C 0 s melUnd1.JH538208 1492 50 - 24570 AGGATGCACTCTATGGTTCACCATGGCATCC---TAT-GGG-GC-ACAATGATA-----CC-- i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 555 31 - 14315 --TGTC--------AGAGCTCAATG-------------ACT-AC-CTATCAGAG-----CT-- i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891277 33 + 2272089 aggacc--------agcCAAGAAtggcaccccattgt-gct-a-------------------- i chrPic1.JH584847 I 8 T 211 s xenTro3.GL173343 56313 39 - 535221 ----------TTCACTAGCACCCTAGAACCC---TGT-GCT-GTCACTCTTTCA--------- i xenTro3.GL173343 C 0 C 0 s latCha1.JH128489 44589 22 + 444037 AGTATA--------ATAGTGCAGCGGAGTA--------------------------------- i latCha1.JH128489 I 10 C 0 s fr3.HE593835 6883 43 + 8154 CTGGTG--------CCGTCGCCGCGTAGCCT---GGT-GCC-GTCGCCGCGTAG-----CA-- i fr3.HE593835 C 0 C 0 s gasAcu1.chrIX 216053 43 - 20249479 ACGGTG--------ACTACAAAGAGACACAC---GGT-GAC-TACAAAGAGACA-----CA-- i gasAcu1.chrIX C 0 C 0 s oryLat2.chr13 1904551 48 + 33409148 TCAGCA--------GCTTCACCCTGAAGGTC---TGC-AGC-TTCACCCTGAAGATCTTCT-- i oryLat2.chr13 C 0 C 0 s gadMor1.HE569363 365446 44 + 3914096 GCAGCA--------TCATGTTAATAAGGTGC---AGC-ATCATATATAACGAGG-----TG-- i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562293 34 - 47442429 -----------------ccactctagaacat---gat-gac-atcacactacac-----ca-- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27911 46 + 83855 ACTGTC--------ACAGACCGCTGGTGTTC---TGGAGAc-cgcactctgaga-----acca i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I a score=383.000000 s mm10.chrUn_GL456394 20250 6 + 24323 CTGTG----A s ornAna1.Contig28798 9673 6 + 11539 CCATA----G i ornAna1.Contig28798 C 0 C 0 s melGal1.chr3 265938 6 - 100405168 TAGTG----A i melGal1.chr3 C 0 C 0 s galGal4.chr2 96303927 6 + 148809762 TTGTG----A i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804255 6 - 4907541 CAGTC----A i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1542 10 - 24570 CTGTGGGGCA i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 586 6 - 14315 CAATG----A i anoCar2.chrUn_GL344973 C 0 C 0 s xenTro3.GL173343 56352 6 - 535221 CTATG----G i xenTro3.GL173343 C 0 n 0 s latCha1.JH128489 44611 6 + 444037 ATGTA----G i latCha1.JH128489 C 0 C 0 s fr3.HE593835 6926 6 + 8154 CGGTG----C i fr3.HE593835 C 0 C 0 s gasAcu1.chrIX 216096 6 - 20249479 CAGTG----A i gasAcu1.chrIX C 0 C 0 s oryLat2.chr13 1904599 6 + 33409148 CAGCA----G i oryLat2.chr13 C 0 C 0 s gadMor1.HE569363 365490 6 + 3914096 CAGCA----T i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562327 6 - 47442429 ctcta----g i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27957 6 + 83855 ctgcg----c i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e chrPic1.JH584847 891310 211 + 2272089 T a score=-13109.000000 s mm10.chrUn_GL456394 20256 3 + 24323 --CAG s ornAna1.Contig28798 9679 3 + 11539 --TAG i ornAna1.Contig28798 C 0 C 0 s melGal1.chr3 265944 3 - 100405168 --CCC i melGal1.chr3 C 0 C 0 s galGal4.chr2 96303933 3 + 148809762 --CCT i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804261 3 - 4907541 --CTG i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1552 3 - 24570 --CCA i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 592 3 - 14315 --CCA i anoCar2.chrUn_GL344973 C 0 C 0 s latCha1.JH128489 44617 3 + 444037 --CAG i latCha1.JH128489 C 0 C 0 s fr3.HE593835 6932 3 + 8154 --CGT i fr3.HE593835 C 0 C 0 s gasAcu1.chrIX 216102 3 - 20249479 --CTA i gasAcu1.chrIX C 0 C 0 s oryLat2.chr13 1904605 3 + 33409148 --CTT i oryLat2.chr13 C 0 C 0 s gadMor1.HE569363 365496 3 + 3914096 --CAT i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562333 2 - 47442429 ---aa i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27963 3 + 83855 tAC-- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e xenTro3.GL173343 56358 0 - 535221 I e chrPic1.JH584847 891310 211 + 2272089 T a score=-135032.000000 s mm10.chrUn_GL456394 20259 43 + 24323 TATATTGGAGCT---------CTATAAC-ACCAC----------------AATGGAGCACT--------GGGACACC---------- s ornAna1.Contig28798 9682 43 + 11539 CAGGGAGGGGCA---------CCATCGC-AGCAA----------------GGAGGGACACC--------GCCACAGC---------- i ornAna1.Contig28798 C 0 C 0 s melGal1.chr3 265947 44 - 100405168 TAGACTGAAGCA--------TTGATGAC-AGCAA----------------ACCAAAGCACA--------GTGATCCC---------- i melGal1.chr3 C 0 C 0 s galGal4.chr2 96303936 43 + 148809762 CACAATGGAGCA---------CACCGCC-TCCAA----------------AGTGGAGCTCT--------GTGACATC---------- i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804264 37 - 4907541 GCATTTGGAGTG--------ACA--------CAG----------------GGTGACACAGG--------GTTGCAAC---------- i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1555 50 - 24570 TGACTTGTTATAGGGTGCCCTGAACGCC-CCCCA------------------TGGGGCACA--------ATGACACC---------- i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 595 59 - 14315 TCTATCAGAGCT---------CAATGCC-ATCTATCAAAGCTCAATGACTATCAGAGCTCG--------ATGACCAC---------- i anoCar2.chrUn_GL344973 C 0 C 0 s xenTro3.GL173416 398396 22 + 427269 -----------------------------------------------TACTGTGGGGCCCA--------ATGATATT---------- i xenTro3.GL173416 T 884 C 0 s latCha1.JH128489 44620 28 + 444037 --------AGTA---------TAATAAT-AGTGC----------------AGTGGAGTAAT--------G----------------- i latCha1.JH128489 C 0 C 0 s fr3.HE593835 6935 43 + 8154 CGCCGCGTAGCC---------TGGTGCC-GTCGC----------------CGCGGAGCACG--------GTGCCGTC---------- i fr3.HE593835 C 0 C 0 s gasAcu1.chrIX 216105 43 - 20249479 TAAAGAGACACA---------CGGTGAC-CACAA----------------AGAGACACACA--------GTGACTAC---------- i gasAcu1.chrIX C 0 C 0 s oryLat2.chr13 1904608 43 + 33409148 CACCCTGAAGAT---------CAGCAGA-TCCAC----------------CCTGAAGGTCT--------GCAGCTTC---------- i oryLat2.chr13 C 0 n 0 s gadMor1.HE569363 365499 35 + 3914096 GTTAATAAGGTG---------CAGCATCATATAT----------------AACGAGGTGC--------------------------- i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562335 43 - 47442429 catgatgaaatc---------acactac-accac----------------tctagaagatg--------atgacatc---------- i danRer7.chr15 C 0 C 0 s petMar1.Contig205 27966 37 + 83855 --------------------------------------------------AGCAATGCACGTCTGGAAAGTCCCACCAGTGTGTGAG i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e chrPic1.JH584847 891310 211 + 2272089 T a score=326.000000 s mm10.chrUn_GL456394 20302 1 + 24323 A s ornAna1.Contig28798 9725 1 + 11539 A i ornAna1.Contig28798 C 0 C 0 s melGal1.chr3 265991 1 - 100405168 A i melGal1.chr3 C 0 I 1 s galGal4.chr2 96303979 1 + 148809762 A i galGal4.chr2 C 0 I 1 s taeGut1.chr26 1804301 1 - 4907541 A i taeGut1.chr26 C 0 I 1 s melUnd1.JH538208 1605 1 - 24570 C i melUnd1.JH538208 C 0 I 1 s anoCar2.chrUn_GL344973 654 1 - 14315 C i anoCar2.chrUn_GL344973 C 0 I 1 s xenTro3.GL173416 398418 1 + 427269 A i xenTro3.GL173416 C 0 I 5 s fr3.HE593835 6978 1 + 8154 G i fr3.HE593835 C 0 C 0 s gasAcu1.chrIX 216148 1 - 20249479 A i gasAcu1.chrIX C 0 C 0 s danRer7.chr15 562378 1 - 47442429 a i danRer7.chr15 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE569363 365534 0 + 3914096 C e petMar1.Contig205 28003 0 + 83855 C e latCha1.JH128489 44648 0 + 444037 C e oryLat2.chr13 1904651 0 + 33409148 I e chrPic1.JH584847 891310 211 + 2272089 T a score=-9335.000000 s mm10.chrUn_GL456394 20303 5 + 24323 AATAG s ornAna1.Contig28798 9726 5 + 11539 TGAAG i ornAna1.Contig28798 C 0 C 0 s melGal1.chr3 265993 5 - 100405168 AGTGG i melGal1.chr3 I 1 C 0 s galGal4.chr2 96303981 5 + 148809762 AATAG i galGal4.chr2 I 1 C 0 s taeGut1.chr26 1804303 5 - 4907541 GGCAG i taeGut1.chr26 I 1 C 0 s melUnd1.JH538208 1607 4 - 24570 A-TGG i melUnd1.JH538208 I 1 C 0 s anoCar2.chrUn_GL344973 656 5 - 14315 ATCAG i anoCar2.chrUn_GL344973 I 1 C 0 s chrPic1.JH584847 891099 5 + 2272089 AATCT i chrPic1.JH584847 T 211 C 0 s xenTro3.GL173416 398424 1 + 427269 ----G i xenTro3.GL173416 I 5 C 0 s fr3.HE593835 6979 2 + 8154 ---CG i fr3.HE593835 C 0 I 3 s gasAcu1.chrIX 216149 2 - 20249479 ---AA i gasAcu1.chrIX C 0 I 3 s danRer7.chr15 562379 2 - 47442429 ---ca i danRer7.chr15 C 0 C 0 s petMar1.Contig205 28003 2 + 83855 ---AG i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE569363 365534 0 + 3914096 C e latCha1.JH128489 44648 0 + 444037 C e oryLat2.chr13 1904651 0 + 33409148 I a score=1950.000000 s mm10.chrUn_GL456394 20308 1 + 24323 A s ornAna1.Contig28798 9731 1 + 11539 A i ornAna1.Contig28798 C 0 C 0 s melGal1.chr3 265998 1 - 100405168 A i melGal1.chr3 C 0 C 0 s galGal4.chr2 96303986 1 + 148809762 G i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804308 1 - 4907541 A i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1611 1 - 24570 G i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 661 1 - 14315 A i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891104 1 + 2272089 C i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398425 1 + 427269 G i xenTro3.GL173416 C 0 C 0 s fr3.HE593835 6984 1 + 8154 A i fr3.HE593835 I 3 C 0 s gasAcu1.chrIX 216154 1 - 20249479 A i gasAcu1.chrIX I 3 n 3 s oryLat2.chr15 304538 1 + 30000224 A i oryLat2.chr15 C 0 C 0 s gadMor1.HE569363 365534 1 + 3914096 A i gadMor1.HE569363 C 0 C 0 s petMar1.Contig205 28005 1 + 83855 A i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr15 562381 0 - 47442429 C e latCha1.JH128489 44648 0 + 444037 C a score=-2957.000000 s mm10.chrUn_GL456394 20309 5 + 24323 GCAC--------A s ornAna1.Contig28798 9732 13 + 11539 ACACCATCTAGAA i ornAna1.Contig28798 C 0 C 0 s melGal1.chr3 265999 5 - 100405168 GGTT--------G i melGal1.chr3 C 0 C 0 s galGal4.chr2 96303987 5 + 148809762 GCTC--------C i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804309 5 - 4907541 GTAG--------G i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1612 5 - 24570 GCAC--------A i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 662 5 - 14315 GCTC--------A i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891105 5 + 2272089 ACAC--------A i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398426 5 + 427269 GCCC--------A i xenTro3.GL173416 C 0 C 0 s fr3.HE593835 6985 5 + 8154 GCCT--------G i fr3.HE593835 C 0 C 0 s oryLat2.chr15 304539 5 + 30000224 GCAC--------A i oryLat2.chr15 C 0 C 0 s gadMor1.HE569363 365535 5 + 3914096 GCAT--------C i gadMor1.HE569363 C 0 C 0 s petMar1.Contig205 28006 5 + 83855 TCTC--------A i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr15 562381 0 - 47442429 C e latCha1.JH128489 44648 0 + 444037 C e gasAcu1.chrIX 216155 3 - 20249479 I a score=-15753.000000 s mm10.chrUn_GL456394 20314 15 + 24323 GTGACACCACAGTGG s sarHar1.chr4_GL857018_random 639080 15 + 2299050 gtcACAGCGCAATTA i sarHar1.chr4_GL857018_random N 0 C 0 s ornAna1.Contig28798 9745 15 + 11539 GGGAGACCACCCAGG i ornAna1.Contig28798 C 0 C 0 s melGal1.chr3 266004 15 - 100405168 GTGACCCCAGACTCA i melGal1.chr3 C 0 C 0 s galGal4.chr2 96303992 15 + 148809762 CTGACGTCACGATGT i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804314 14 - 4907541 GTGACA-CAGGGTGA i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1617 14 - 24570 GTGACA-CCCTATGG i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 667 15 - 14315 ATGACTACCTATCAG i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891110 15 + 2272089 GTGAAATCATAATAT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398431 15 + 427269 ATGATATTACTGTGG i xenTro3.GL173416 C 0 C 0 s latCha1.JH128489 44648 6 + 444037 ---------TAGTGG i latCha1.JH128489 C 0 C 0 s fr3.HE593835 6990 15 + 8154 GTGCCGTCGCCGCGG i fr3.HE593835 C 0 C 0 s gasAcu1.chrI 1142974 15 + 28185914 TTAACACCGCAGTAG i gasAcu1.chrI n 3 C 0 s oryLat2.chr15 304544 15 + 30000224 CCGATGATGTACTTC i oryLat2.chr15 C 0 C 0 s gadMor1.HE569363 365540 15 + 3914096 ATGTTAATAAGGTGC i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562381 14 - 47442429 -ctataccactctag i danRer7.chr15 C 0 C 0 s petMar1.Contig205 28011 15 + 83855 ATGTCGTTGCAGTTG i petMar1.Contig205 C 0 T 1469 e tetNig2.chr21_random 2794303 867 - 3311323 I a score=983.000000 s mm10.chrUn_GL456394 20329 1 + 24323 A s sarHar1.chr4_GL857018_random 639095 1 + 2299050 T i sarHar1.chr4_GL857018_random C 0 C 0 s ornAna1.Contig28798 9760 1 + 11539 A i ornAna1.Contig28798 C 0 n 0 s melGal1.chr3 266019 1 - 100405168 A i melGal1.chr3 C 0 C 0 s galGal4.chr2 96304007 1 + 148809762 G i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804328 1 - 4907541 T i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1631 1 - 24570 G i melUnd1.JH538208 C 0 C 0 s anoCar2.chrUn_GL344973 682 1 - 14315 A i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891125 1 + 2272089 A i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398446 1 + 427269 G i xenTro3.GL173416 C 0 C 0 s latCha1.JH128489 44654 1 + 444037 A i latCha1.JH128489 C 0 C 0 s fr3.HE593835 7005 1 + 8154 A i fr3.HE593835 C 0 C 0 s gasAcu1.chrI 1142989 1 + 28185914 A i gasAcu1.chrI C 0 C 0 s oryLat2.chr15 304559 1 + 30000224 A i oryLat2.chr15 C 0 C 0 s gadMor1.HE569363 365555 1 + 3914096 A i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562395 1 - 47442429 a i danRer7.chr15 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e petMar1.Contig205 28026 1469 + 83855 T a score=6354.000000 s mm10.chrUn_GL456394 20330 4 + 24323 GCAC s sarHar1.chr4_GL857018_random 639096 4 + 2299050 ATTT i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr3 266020 4 - 100405168 GCAT i melGal1.chr3 C 0 C 0 s galGal4.chr2 96304008 4 + 148809762 GCTC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804329 4 - 4907541 ACAG i taeGut1.chr26 C 0 C 0 s melUnd1.JH538208 1632 4 - 24570 GCAC i melUnd1.JH538208 C 0 N 0 s anoCar2.chrUn_GL344973 683 4 - 14315 GCTC i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891126 4 + 2272089 GTGC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398447 4 + 427269 GCCC i xenTro3.GL173416 C 0 C 0 s latCha1.JH128489 44655 4 + 444037 GTAT i latCha1.JH128489 C 0 C 0 s fr3.HE593835 7006 4 + 8154 GCAC i fr3.HE593835 C 0 C 0 s gasAcu1.chrI 1142990 4 + 28185914 ACCC i gasAcu1.chrI C 0 C 0 s oryLat2.chr15 304560 4 + 30000224 GCAC i oryLat2.chr15 C 0 C 0 s gadMor1.HE569363 365556 4 + 3914096 GCAT i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562396 4 - 47442429 agat i danRer7.chr15 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e petMar1.Contig205 28026 1469 + 83855 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-14062.000000 s mm10.chrUn_GL456394 20334 27 + 24323 AGAG-ACAGCTCAGTGGAGCACTTTGAC s sarHar1.chr4_GL857018_random 639100 27 + 2299050 TGTC-ACATTGCAATGATACTCTGTTAC i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr3 266024 27 - 100405168 GGTG-ACACCAAACTGAAGAATGGTGCC i melGal1.chr3 C 0 C 0 s galGal4.chr2 96304012 27 + 148809762 TGAG-GTGTCAAAGTGGAGCTCTTTGAC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804333 22 - 4907541 GGTG-AC-----AATGGCACTCACTGGC i taeGut1.chr26 C 0 C 0 s melUnd1.JH540822 99 16 - 1027 ------------ATACGAACCCTTTCGC i melUnd1.JH540822 N 0 C 0 s anoCar2.chrUn_GL344973 687 27 - 14315 AATG-ACTACCTATCAGAGCTCAATGAC i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891130 27 + 2272089 TAGG-ACATTGCAAGGCAATGCAATGAC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398451 27 + 427269 AATG-ATATTACTGTGGGGCCCAATGAT i xenTro3.GL173416 C 0 C 0 s latCha1.JH128489 44659 24 + 444037 ---A-ATAGTGCAGTGGAGTATATTAAT i latCha1.JH128489 C 0 C 0 s fr3.HE593835 7010 27 + 8154 GGTG-CCGTCGCCGCGGAGCACGGTGCC i fr3.HE593835 C 0 n 0 s gasAcu1.chrI 1142994 27 + 28185914 TTTA-ACACCTCAATAGAACCCTTTGAT i gasAcu1.chrI C 0 C 0 s oryLat2.chr15 304564 27 + 30000224 ACCG-ATGGGGTAGTTCAGCACACTGAT i oryLat2.chr15 C 0 C 0 s gadMor1.HE569363 365560 28 + 3914096 CATATATAACGAGGTGCAGCACCATGAT i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562400 26 - 47442429 gatg-acatcacactataccactctaa- i danRer7.chr15 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e petMar1.Contig205 28026 1469 + 83855 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-34526.000000 s mm10.chrUn_GL456394 20361 21 + 24323 AACACAGTGGAGCACTATGAT s sarHar1.chr4_GL857018_random 639127 21 + 2299050 AGTGCAATGATACTTTGTCAC i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr3 266051 6 - 100405168 ACCAAA--------------- i melGal1.chr3 C 0 T 786 s galGal4.chr2 96304039 19 + 148809762 GTCACAGATAAT--CTCTGGC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804355 21 - 4907541 ACCCAGGATGacagctgtggc i taeGut1.chr26 C 0 C 0 s melUnd1.JH540822 115 21 - 1027 ACCCTGTAGGGAACCTATAGC i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 714 21 - 14315 TACCTATCAGAGCTCAATGAC i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891157 21 + 2272089 ATCATAATGCTGCACTATGAC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398478 21 + 427269 ATTACTGTGGGGCCCAATGAT i xenTro3.GL173416 C 0 C 0 s latCha1.JH128489 44683 21 + 444037 TGCAGAGTGGAGTATCATAAT i latCha1.JH128489 C 0 C 0 s gasAcu1.chrI 1143021 16 + 28185914 -----ACCTCAGTAGAACCCT i gasAcu1.chrI C 0 I 5 s oryLat2.chr15 304591 21 + 30000224 GGGATAGTTCAGCACACTGAT i oryLat2.chr15 C 0 n 0 s gadMor1.HE569363 365588 21 + 3914096 AACGAGGTGCAGCATCATGTT i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562426 19 - 47442429 --aacatgataacatcacact i danRer7.chr15 C 0 I 2 e tetNig2.chr21_random 2794303 867 - 3311323 I e petMar1.Contig205 28026 1469 + 83855 T e fr3.HE593835 7037 0 + 8154 I e ornAna1.Contig28798 9761 0 + 11539 I a score=2961.000000 s mm10.chrUn_GL456394 20382 15 + 24323 AACAAAGTGGGACAC s sarHar1.chr4_GL857018_random 639148 15 + 2299050 AGCACAATGATATTT i sarHar1.chr4_GL857018_random C 0 C 0 s galGal4.chr2 96304058 15 + 148809762 AACACAGTGGGTCTT i galGal4.chr2 C 0 I 23 s taeGut1.chr26 1804376 15 - 4907541 agagcaggggaACAT i taeGut1.chr26 C 0 C 0 s melUnd1.JH540822 136 15 - 1027 ACCCTATTGGAGCCC i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 735 15 - 14315 CACCAATCAGAGCTC i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891178 15 + 2272089 ATCAAAATACAGTGC i chrPic1.JH584847 C 0 C 0 s latCha1.JH128489 44704 15 + 444037 TGCAAAGTGGAGTAA i latCha1.JH128489 C 0 C 0 s gasAcu1.chrI 1143042 15 + 28185914 ACCTCAGTAGAACCC i gasAcu1.chrI I 5 C 0 s gadMor1.HE569363 365609 15 + 3914096 AACGAGGTGCAGCAT i gadMor1.HE569363 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr15 562445 2 - 47442429 I e melGal1.chr3 266057 786 - 100405168 T e petMar1.Contig205 28026 1469 + 83855 T e fr3.HE593835 7037 0 + 8154 I e xenTro3.GL173416 398499 0 + 427269 C e oryLat2.chr15 304612 0 + 30000224 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-38722.000000 s mm10.chrUn_GL456394 20397 24 + 24323 TGAGACAACACAGTGCAGAACTGT s sarHar1.chr4_GL857018_random 639163 20 + 2299050 T----TGTCACAGCGCAACGATAC i sarHar1.chr4_GL857018_random C 0 C 0 s galGal4.chr2 96304096 5 + 148809762 -------------------AGTGA i galGal4.chr2 I 23 C 0 s taeGut1.chr26 1804391 1 - 4907541 -----------------------C i taeGut1.chr26 C 0 C 0 s melUnd1.JH540822 151 19 - 1027 -----TTTAGCATCCTATAGGAGA i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 750 15 - 14315 ---------AATGACTATCAGAGC i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891193 9 + 2272089 ---------------TATGATATC i chrPic1.JH584847 C 0 C 0 s latCha1.JH128489 44719 19 + 444037 -----TGTAGCGGGGTATAATAAT i latCha1.JH128489 C 0 C 0 s gasAcu1.chrI 1143057 19 + 28185914 -----TTTAATACCTCAGTAGAAC i gasAcu1.chrI C 0 C 0 s gadMor1.HE569363 365624 19 + 3914096 -----CAAGTTGACGAGGTGCAGC i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562447 13 - 47442429 -----------accactctaGAAG i danRer7.chr15 I 2 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr3 266057 786 - 100405168 T e petMar1.Contig205 28026 1469 + 83855 T e fr3.HE593835 7037 0 + 8154 I e xenTro3.GL173416 398499 0 + 427269 C e oryLat2.chr15 304612 0 + 30000224 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-10965.000000 s mm10.chrUn_GL456394 20421 3 + 24323 TTT- s sarHar1.chr4_GL857018_random 639183 3 + 2299050 TTT- i sarHar1.chr4_GL857018_random C 0 C 0 s galGal4.chr2 96304101 3 + 148809762 CGT- i galGal4.chr2 C 0 I 13 s taeGut1.chr26 1804392 3 - 4907541 AGG- i taeGut1.chr26 C 0 I 9 s melUnd1.JH540822 170 3 - 1027 TCT- i melUnd1.JH540822 C 0 I 5 s anoCar2.chrUn_GL344973 765 3 - 14315 TCG- i anoCar2.chrUn_GL344973 C 0 I 5 s chrPic1.JH584847 891202 3 + 2272089 ACA- i chrPic1.JH584847 C 0 I 15 s latCha1.JH128489 44738 3 + 444037 AGT- i latCha1.JH128489 C 0 I 10 s gasAcu1.chrI 1143076 3 + 28185914 CTT- i gasAcu1.chrI C 0 I 5 s gadMor1.HE569363 365643 3 + 3914096 ATC- i gadMor1.HE569363 C 0 I 6 s danRer7.chr15 562460 3 - 47442429 ATG- i danRer7.chr15 C 0 I 5 s petMar1.Contig73717 3994 3 + 5062 -TTC i petMar1.Contig73717 n 1469 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr3 266057 786 - 100405168 T e fr3.HE593835 7037 0 + 8154 I e xenTro3.GL173416 398499 0 + 427269 C e oryLat2.chr15 304612 0 + 30000224 I e ornAna1.Contig28798 9761 0 + 11539 I a score=1077.000000 s mm10.chrUn_GL456394 20424 18 + 24323 ACCACAGTGGAGC---ACTTT s sarHar1.chr4_GL857018_random 639186 21 + 2299050 GTCGCAGTGCAACGATACTTT i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498623 18 + 38656188 ATCACAATGCGGC---TCTGT i melGal1.chr8 T 286 C 0 s galGal4.chr2 96304117 18 + 148809762 TCCAGAATTGGGT---TCTGT i galGal4.chr2 I 13 C 0 s taeGut1.chr26 1804404 8 - 4907541 ----------GGT---GGTGC i taeGut1.chr26 I 9 C 0 s melUnd1.JH540822 178 18 - 1027 ACCCTACAGGAGC---CCTAC i melUnd1.JH540822 I 5 C 0 s anoCar2.chrUn_GL344973 773 18 - 14315 TACCTATCATAGC---CCAAT i anoCar2.chrUn_GL344973 I 5 C 0 s chrPic1.JH584847 891220 18 + 2272089 GTTACAATGCAGc---actat i chrPic1.JH584847 I 15 I 72 s latCha1.JH128489 44751 18 + 444037 AATGTAGCGGAGT---ATATT i latCha1.JH128489 I 10 I 1 s gasAcu1.chrI 1143084 18 + 28185914 ACCTCAGTAGAAC---CCTTT i gasAcu1.chrI I 5 I 1 s gadMor1.HE569363 365652 18 + 3914096 AACGAGGTGCAGC---ATCAT i gadMor1.HE569363 I 6 I 1 s danRer7.chr15 562468 18 - 47442429 ATCACACTATACC---ACTCT i danRer7.chr15 I 5 I 1 s petMar1.Contig73717 3997 18 + 5062 ACCACAGTGGGAC---GCtct i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e fr3.HE593835 7037 0 + 8154 I e xenTro3.GL173416 398499 0 + 427269 C e oryLat2.chr15 304612 0 + 30000224 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-7508.000000 s mm10.chrUn_GL456394 20442 6 + 24323 GACACC- s sarHar1.chr4_GL857018_random 639207 5 + 2299050 GTTAC-- i sarHar1.chr4_GL857018_random C 0 C 0 s latCha1.JH128489 44770 5 + 444037 ATTCC-- i latCha1.JH128489 I 1 n 1 s gasAcu1.chrI 1143103 5 + 28185914 ACACC-- i gasAcu1.chrI I 1 C 0 s gadMor1.HE569363 365671 5 + 3914096 AACGA-- i gadMor1.HE569363 I 1 C 0 s danRer7.chr15 562487 5 - 47442429 GAAGA-- i danRer7.chr15 I 1 C 0 s petMar1.Contig73717 4015 6 + 5062 atcac-c i petMar1.Contig73717 C 0 C 0 e melUnd1.JH540822 196 0 - 1027 C e anoCar2.chrUn_GL344973 791 0 - 14315 C e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498641 0 + 38656188 C e taeGut1.chr26 1804412 0 - 4907541 C e fr3.HE593835 7037 0 + 8154 I e xenTro3.GL173416 398499 0 + 427269 C e galGal4.chr2 96304135 0 + 148809762 C e oryLat2.chr15 304612 0 + 30000224 I e chrPic1.JH584847 891238 72 + 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-52566.000000 s mm10.chrUn_GL456394 20448 18 + 24323 AGAGTGGAACA--------------TGTTACA s sarHar1.chr4_GL857018_random 639212 22 + 2299050 --AGTGCAACGAT--------ACTTTGTTACA i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498641 24 + 38656188 --GATGTCATAATGG------GCTCTGTGACA i melGal1.chr8 C 0 C 0 s galGal4.chr2 96304135 24 + 148809762 --GATGTCACAAAGG------GCTTTGTGACC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804412 14 - 4907541 --AGTGTGACACAGG----------------A i taeGut1.chr26 C 0 C 0 s melUnd1.JH540822 196 25 - 1027 --AGCACCGTATGGGA-----GGCCTATAGCA i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 791 25 - 14315 --GACCACCAATCAGA-----CCTCAATGACC i anoCar2.chrUn_GL344973 C 0 C 0 s gasAcu1.chrI 1143108 9 + 28185914 -----------------------TCAGTAGAA i gasAcu1.chrI C 0 I 10 s gadMor1.HE569363 365676 9 + 3914096 -----------------------GGTGCAGCA i gadMor1.HE569363 C 0 I 9 s danRer7.chr15 562492 8 - 47442429 -----------------------TGA-TGaca i danRer7.chr15 C 0 I 10 s petMar1.Contig73717 4021 20 + 5062 ----------actggggggacGCTCTATCA-- i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH128489 44775 1 + 444037 I e fr3.HE593835 7037 0 + 8154 I e xenTro3.GL173416 398499 0 + 427269 C e oryLat2.chr15 304612 0 + 30000224 I e chrPic1.JH584847 891238 72 + 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-10302.000000 s mm10.chrUn_GL456394 20466 34 + 24323 CCATAGTGGAGCACTGTGACAGCACAGTGGAGCA s sarHar1.chr4_GL857018_random 639234 34 + 2299050 ATGCAGCGATGCTTTGTCACAGTGTGATGATACC i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498665 34 + 38656188 TCACAATGGGGCTCTGTGATGTCACAATGCAGCT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96304159 34 + 148809762 TCACAACGGGGCACACTGCTTCCAAAATGGAGCT i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804426 29 - 4907541 TGACAGCAGGG-----TGACACCAGAGTAACACA i taeGut1.chr26 C 0 C 0 s melUnd1.JH540822 221 34 - 1027 CCCTATGGGAGCCCCATAGCACCCTATATGAGCC i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 816 34 - 14315 ACCTATCAGAGCTCAATGACCACCAATCAGAGCT i anoCar2.chrUn_GL344973 C 0 C 0 s fr3.HE591961 84002 34 + 93265 CCAAAAACGTGCACTGAAACATCCCAGTCATGCA i fr3.HE591961 T 527 C 0 s gasAcu1.chrI 1143127 34 + 28185914 CCTCAGTAGAACCCTTTAACACCTCAGTAGAACC i gasAcu1.chrI I 10 C 0 s gadMor1.HE569363 365694 18 + 3914096 ---ACAAGGTGC-----AGCATCTTG-------- i gadMor1.HE569363 I 9 C 0 s danRer7.chr15 562510 34 - 47442429 ccactccagaacatgatgacatcacacttcacca i danRer7.chr15 I 10 I 2 s petMar1.Contig73717 4041 34 + 5062 CCACTGTGGGACGCTCTATCACCACTGTGGGACG i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH128489 44775 1 + 444037 I e xenTro3.GL173416 398499 0 + 427269 C e oryLat2.chr15 304612 0 + 30000224 I e chrPic1.JH584847 891238 72 + 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=6401.000000 s mm10.chrUn_GL456394 20500 7 + 24323 ATGTAAC s sarHar1.chr4_GL857018_random 639268 7 + 2299050 TTGTTAC i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498699 7 + 38656188 CTGTGAT i melGal1.chr8 C 0 C 0 s galGal4.chr2 96304193 7 + 148809762 CTGTGAT i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804455 7 - 4907541 GAGTAAC i taeGut1.chr26 C 0 C 0 s melUnd1.JH540822 255 7 - 1027 CCATAGC i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 850 7 - 14315 CAATGAC i anoCar2.chrUn_GL344973 C 0 C 0 s fr3.HE591961 84036 7 + 93265 CTGAAAC i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143161 7 + 28185914 CTTTAAT i gasAcu1.chrI C 0 C 0 s oryLat2.chr19 21566638 7 + 23451325 CTGCAGA i oryLat2.chr19 n 0 C 0 s gadMor1.HE569363 365712 6 + 3914096 -TATAAC i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562546 7 - 47442429 ctaaaac i danRer7.chr15 I 2 C 0 s petMar1.Contig73717 4075 7 + 5062 CTCTATT i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH128489 44775 1 + 444037 I e xenTro3.GL173416 398499 0 + 427269 C e chrPic1.JH584847 891238 72 + 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-4896.000000 s mm10.chrUn_GL456394 20507 3 + 24323 AGT s sarHar1.chr4_GL857018_random 639275 3 + 2299050 AGT i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498706 3 + 38656188 TGT i melGal1.chr8 C 0 T 96 s galGal4.chr2 96304200 3 + 148809762 GTC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804462 3 - 4907541 AGT i taeGut1.chr26 C 0 C 0 s melUnd1.JH540822 262 3 - 1027 ACC i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 857 3 - 14315 TAC i anoCar2.chrUn_GL344973 C 0 C 0 s xenTro3.GL173416 398499 3 + 427269 ATT i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84043 3 + 93265 ATC i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143168 3 + 28185914 ACC i gasAcu1.chrI C 0 C 0 s oryLat2.chr19 21566645 3 + 23451325 ACC i oryLat2.chr19 C 0 C 0 s gadMor1.HE569363 365718 3 + 3914096 GAG i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562553 3 - 47442429 atg i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4082 3 + 5062 ACT i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH128489 44775 1 + 444037 I e chrPic1.JH584847 891238 72 + 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-8881.000000 s mm10.chrUn_GL456394 20510 8 + 24323 ACAGTGGA s sarHar1.chr4_GL857018_random 639278 8 + 2299050 ACAATGAT i sarHar1.chr4_GL857018_random C 0 C 0 s galGal4.chr2 96304203 8 + 148809762 ACAATAGG i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804465 3 - 4907541 -----GGG i taeGut1.chr26 C 0 I 5 s melUnd1.JH540822 265 7 - 1027 -CTATTGG i melUnd1.JH540822 C 0 I 1 s anoCar2.chrUn_GL344973 860 7 - 14315 -CTATCAG i anoCar2.chrUn_GL344973 C 0 I 1 s xenTro3.GL173416 398502 8 + 427269 GCCGTGGG i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84046 8 + 93265 CCAGTCAT i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143171 8 + 28185914 TCAGTAGA i gasAcu1.chrI C 0 C 0 s oryLat2.chr19 21566648 8 + 23451325 ACAGATGT i oryLat2.chr19 C 0 C 0 s gadMor1.HE569363 365721 7 + 3914096 TT-GCAGT i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562556 8 - 47442429 atgacatc i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4085 8 + 5062 ACTGTGGG i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498709 96 + 38656188 T e latCha1.JH128489 44775 1 + 444037 I e chrPic1.JH584847 891238 72 + 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-8698.000000 s mm10.chrUn_GL456394 20518 20 + 24323 ACACTGTGACACCACAGTGG s sarHar1.chr4_GL857018_random 639286 20 + 2299050 ACTTTGTCACAGTGCAACGA i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498613 20 + 38656188 GCTCTGTGACATCACAATGC i melGal1.chr8 T 96 C 0 s galGal4.chr2 96304211 20 + 148809762 GCTCCCTGACATCACAATGC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804473 7 - 4907541 -------------ACAAGGT i taeGut1.chr26 I 5 C 0 s melUnd1.JH540822 273 19 - 1027 GCCCTGTAGCACC-CTCTAG i melUnd1.JH540822 I 1 C 0 s anoCar2.chrUn_GL344973 868 20 - 14315 GCTCAATGACCACCAATCAG i anoCar2.chrUn_GL344973 I 1 C 0 s xenTro3.GL173416 398510 20 + 427269 GCCCAATGATATTACTGTGG i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84054 20 + 93265 GCACTTAAACATCCCAGTCG i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143179 20 + 28185914 ACCCTTTAACACCTCAGTAG i gasAcu1.chrI C 0 C 0 s oryLat2.chr19 21566656 20 + 23451325 AGACTGTAGAACCACAGATG i oryLat2.chr19 C 0 C 0 s gadMor1.HE569363 365728 11 + 3914096 ATAATTTA---------TAA i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562564 17 - 47442429 acactacaccactcca---g i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4093 20 + 5062 ACGCTCTATCACCACTGTGG i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH128489 44775 1 + 444037 I e chrPic1.JH584847 891238 72 + 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-92176.000000 s mm10.chrUn_GL456394 20538 35 + 24323 AGCACTGT-----------------------------------AAAAACAAAGTG--------------G-------------------------------AACATTGT-GACACA s sarHar1.chr4_GL857018_random 639306 35 + 2299050 TACTTTGT-----------------------------------TACAGTGCAAGG--------------A-------------------------------TACTTTGT-CACAGT i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498633 34 + 38656188 GGCTCTGT-----------------------------------GATGTCATAATG----------------------------------------------GGCTCTGT-GACATC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96304231 115 + 148809762 GGTCCTGTCAAAGTGGGGCTGTTTGATTTCGCAGATGATCTCAGGTGCTacaatgtgggtttttttgtggaGTCCGAATGCACTCAGTGACGTGTGAACAAGGCTGCAT-TGCATC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804480 36 - 4907541 GAC---AT-----------------------------------GATGTGACAATG--------------GGGTC---------------------------AGCAGGGT-GACAGC i taeGut1.chr26 C 0 C 0 s melUnd1.JH540822 292 34 - 1027 GACCCCAT-----------------------------------AGCACCCTATAG----------------------------------------------GACCGCAT-AGCACC i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 888 35 - 14315 AGCTCAAT-----------------------------------GACTACCTATCA--------------G-------------------------------AGCTCGAT-GACCAT i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 891310 38 + 2272089 agcccTGC--------------------------------ACAAACAGAGTAGCA----------------------------------------------GGCAGATTCTGCCTC i chrPic1.JH584847 I 72 T 366 s xenTro3.GL173416 398530 35 + 427269 GGCCCAAT-----------------------------------GATATTACTGTG--------------G-------------------------------GGCCCAAT-GATATT i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84074 35 + 93265 TGCACTGA-----------------------------------AACATCCCAGTC--------------A-------------------------------TGCACTGA-AACATC i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143199 35 + 28185914 AACCCTTT-----------------------------------AATACCTCAGTA--------------A-------------------------------AACCCTTT-AATACC i gasAcu1.chrI C 0 C 0 s oryLat2.chr19 21566676 35 + 23451325 AAGACTGT-----------------------------------AGAACCACAGAT--------------G-------------------------------AAGACTGC-AGAACC i oryLat2.chr19 C 0 C 0 s gadMor1.HE569363 365739 35 + 3914096 AGAGGTGC-----------------------------------AGCATCAAGTTG--------------A-------------------------------CGAGGTGC-AGCATC i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562581 35 - 47442429 aacatgat-----------------------------------gacatcacacta--------------t-------------------------------accactct-agaaca i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4113 36 + 5062 GACGCtct-----------------------------------atcaccactggg--------------gg------------------------------gacGCTCT-ATCACT i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-23347.000000 s mm10.chrUn_GL456394 20573 8 + 24323 ACA-GTGGA s sarHar1.chr4_GL857018_random 639341 8 + 2299050 GCA-AGGAT i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498667 8 + 38656188 ACA-ATGGG i melGal1.chr8 C 0 T 144 s galGal4.chr2 96304346 8 + 148809762 ACA-ATATG i galGal4.chr2 C 0 I 3 s taeGut1.chr26 1804516 8 - 4907541 AAA-GTGAC i taeGut1.chr26 C 0 I 12 s melUnd1.JH540822 326 8 - 1027 CTA-TGGGA i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 923 8 - 14315 CTA-TCAGA i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 1381135 6 - 2272089 ACA-ATG-- i chrPic1.JH584847 n 366 C 0 s xenTro3.GL173416 398565 8 + 427269 ACT-GTGGG i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84109 8 + 93265 CCA-AACGT i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143234 8 + 28185914 TCA-GTAGA i gasAcu1.chrI C 0 C 0 s oryLat2.chr19 21566711 8 + 23451325 ACA-GATGT i oryLat2.chr19 C 0 C 0 s gadMor1.HE569363 365774 9 + 3914096 ATATATAAT i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562616 3 - 47442429 tga------ i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4149 8 + 5062 GCT-GTGGG i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-63655.000000 s mm10.chrUn_GL456394 20581 27 + 24323 GCTCTGTGac-----accacagtgga---gcagtg-------------------- s sarHar1.chr4_GL857018_random 639349 27 + 2299050 ACTTTGTCAC-----AGTGCAACTAT---GCCTTG-------------------- i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498531 27 + 38656188 GCTGTGTGAC-----GTCACAATGGG---CCTCTG-------------------- i melGal1.chr8 T 144 C 0 s galGal4.chr2 96304357 27 + 148809762 TCTTTGAGAT-----GTCACACTGGA---TTTCTG-------------------- i galGal4.chr2 I 3 C 0 s taeGut1.chr26 1804536 26 - 4907541 TCTCTGACACTCAGGGTGACACAGG---------G-------------------- i taeGut1.chr26 I 12 C 0 s melUnd1.JH540822 334 18 - 1027 ---------------GCCCCATAGCA--CCCTATG-------------------- i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 931 27 - 14315 GCTCGATGAC-----CATCTATCAGA---GCTCGA-------------------- i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 1381141 25 - 2272089 ---CCGTTGC-----ACCCCAGGAAA--ATGTCAA-------------------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398573 27 + 427269 GCCCAATGAT-----ATTACTGTGGG---GCCCAA-------------------- i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84117 27 + 93265 GCACTGAAAC-----ATCCCAGTCGT---GCACTG-------------------- i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143242 27 + 28185914 ACCCTTTAAC-----ACCTCAGTAGA---ACCCTT-------------------- i gasAcu1.chrI C 0 C 0 s oryLat2.chr19 21566719 27 + 23451325 AGACTGCAGA-----ACCACAGATGT---AGACTG-------------------- i oryLat2.chr19 C 0 n 0 s gadMor1.HE569363 365783 14 + 3914096 GAGGTGCAGC-----ATCA------------------------------------ i gadMor1.HE569363 C 0 C 0 s petMar1.Contig73717 4157 50 + 5062 ACGCtctatc-----accactggggggacgctctatcaccactggggggacgctc i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr15 562619 0 - 47442429 C e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=11094.000000 s mm10.chrUn_GL456394 20608 4 + 24323 tgac s sarHar1.chr4_GL857018_random 639376 4 + 2299050 TTAC i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498558 4 + 38656188 TGAC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96304384 4 + 148809762 TGTC i galGal4.chr2 C 0 C 0 s taeGut1.chr26 1804562 4 - 4907541 TGAC i taeGut1.chr26 C 0 n 0 s melUnd1.JH540822 352 4 - 1027 GGAG i melUnd1.JH540822 C 0 I 1 s anoCar2.chrUn_GL344973 958 4 - 14315 TGAC i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 1381166 4 - 2272089 TAAT i chrPic1.JH584847 C 0 I 12 s xenTro3.GL173416 398600 4 + 427269 TGAT i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84144 4 + 93265 AAAC i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143269 4 + 28185914 TAAC i gasAcu1.chrI C 0 C 0 s oryLat2.chr23 11454122 4 + 24050845 TGAC i oryLat2.chr23 n 0 C 0 s danRer7.chr15 562619 4 - 47442429 tgac i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4207 4 + 5062 tatc i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE569363 365797 0 + 3914096 C e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-2026.000000 s mm10.chrUn_GL456394 20612 2 + 24323 ag s sarHar1.chr4_GL857018_random 639380 2 + 2299050 AG i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498562 2 + 38656188 AG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96304388 2 + 148809762 AT i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 108639882 2 + 175225315 ag i taeGut1.chrUn n 0 C 0 s melUnd1.JH540822 357 2 - 1027 CC i melUnd1.JH540822 I 1 C 0 s anoCar2.chrUn_GL344973 962 1 - 14315 -C i anoCar2.chrUn_GL344973 C 0 C 0 s chrPic1.JH584847 1381182 2 - 2272089 AA i chrPic1.JH584847 I 12 C 0 s xenTro3.GL173416 398604 2 + 427269 AT i xenTro3.GL173416 C 0 I 359 s fr3.HE591961 84148 2 + 93265 CT i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143273 2 + 28185914 AC i gasAcu1.chrI C 0 C 0 s oryLat2.chr23 11454126 2 + 24050845 AG i oryLat2.chr23 C 0 C 0 s danRer7.chr15 562623 2 - 47442429 at i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4211 2 + 5062 ac i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE569363 365797 0 + 3914096 C e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-14271.000000 s mm10.chrUn_GL456394 20614 8 + 24323 caca----------gtgg-- s sarHar1.chr4_GL857018_random 639382 8 + 2299050 TACA----------ATGC-- i sarHar1.chr4_GL857018_random C 0 C 0 s melGal1.chr8 3498564 8 + 38656188 CCTA----------ATGG-- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96304390 8 + 148809762 CACA----------ATGG-- i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 108639884 8 + 175225315 TGCC----------ATGG-- i taeGut1.chrUn C 0 C 0 s melUnd1.JH540822 359 6 - 1027 CATC----------AT---- i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 963 8 - 14315 ACCA----------ATCA-- i anoCar2.chrUn_GL344973 C 0 I 1 s chrPic1.JH584847 1381184 8 - 2272089 GCCA----------GTGA-- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398965 8 + 427269 TACT----------GTGG-- i xenTro3.GL173416 I 359 C 0 s fr3.HE591961 84150 8 + 93265 CCCA----------AACG-- i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143275 8 + 28185914 CTCA----------GTAG-- i gasAcu1.chrI C 0 C 0 s oryLat2.chr23 11454128 8 + 24050845 CATA----------CTGG-- i oryLat2.chr23 C 0 C 0 s gadMor1.HE569363 365797 6 + 3914096 --TG----------ATAA-- i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562625 18 - 47442429 cacactactccactctag-- i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4213 8 + 5062 --ca----------ctgggg i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-6266.000000 s mm10.chrUn_GL456394 20622 10 + 24323 --agc------acagtga s sarHar1.chr4_GL857018_random 639390 16 + 2299050 --TACTCTGTTACAGTGA i sarHar1.chr4_GL857018_random C 0 C 0 s galGal4.chr2 96304398 10 + 148809762 --AGC------ACTGTGA i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 108639892 10 + 175225315 --GGC------ACTGGGA i taeGut1.chrUn C 0 C 0 s melUnd1.JH540822 365 10 - 1027 --CCC------CCTGCAG i melUnd1.JH540822 C 0 C 0 s anoCar2.chrUn_GL344973 972 10 - 14315 --AGC------TCAATGA i anoCar2.chrUn_GL344973 I 1 N 0 s chrPic1.JH584847 1381192 10 - 2272089 --GGC------ATTGTCA i chrPic1.JH584847 C 0 I 3 s xenTro3.GL173416 398973 10 + 427269 --GGC------CCAATGA i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84158 10 + 93265 --TGC------ACTGAAA i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143283 10 + 28185914 --AAC------CCATTAA i gasAcu1.chrI C 0 C 0 s oryLat2.chr23 11454136 10 + 24050845 --AAC------ACTGTAC i oryLat2.chr23 C 0 C 0 s gadMor1.HE569363 365803 10 + 3914096 --CGA------GTTGCAG i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562643 10 - 47442429 --aac------atgatga i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4221 10 + 5062 gacGC------TCTAT-- i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-4521.000000 s mm10.chrUn_GL456394 20632 4 + 24323 aa--gc s sarHar1.chr4_GL857018_random 639406 6 + 2299050 AACTGT i sarHar1.chr4_GL857018_random C 0 C 0 s galGal4.chr2 96304408 4 + 148809762 --TTTC i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 108639902 4 + 175225315 --CAGC i taeGut1.chrUn C 0 C 0 s melUnd1.JH540822 375 4 - 1027 --GAGG i melUnd1.JH540822 C 0 C 0 s chrPic1.JH584847 1381205 4 - 2272089 --CATC i chrPic1.JH584847 I 3 C 0 s xenTro3.GL173416 398983 4 + 427269 --TATT i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84168 4 + 93265 --TATC i fr3.HE591961 C 0 C 0 s gasAcu1.chrI 1143293 4 + 28185914 --TACC i gasAcu1.chrI C 0 T 207 s oryLat2.chr23 11454146 4 + 24050845 --CACC i oryLat2.chr23 C 0 I 5 s gadMor1.HE569363 365813 4 + 3914096 --CATC i gadMor1.HE569363 C 0 I 6 s danRer7.chr15 562653 4 - 47442429 --catc i danRer7.chr15 C 0 I 2 s petMar1.Contig73717 4231 4 + 5062 --CACC i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-36573.000000 s mm10.chrUn_GL456394 20636 26 + 24323 attgtggagcactggattg-caccatg s sarHar1.chr4_GL857018_random 639412 27 + 2299050 ACTTTGTTACAGTGCAACGATACTTTG i sarHar1.chr4_GL857018_random C 0 C 0 s galGal4.chr2 96304412 27 + 148809762 AGAATGCGGCTCTTTGATGTCATAATG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 108639906 27 + 175225315 ACCATGGGGcactgggacagcagcaca i taeGut1.chrUn C 0 C 0 s melUnd1.JH540822 379 27 - 1027 TCCGTAGTGCCCTATAGCACCTTACGG i melUnd1.JH540822 C 0 C 0 s chrPic1.JH584847 1381209 23 - 2272089 ACCCAATTGCACTAGAATGTCTT---- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398987 14 + 427269 ACTGTGGGGCCCAA------------- i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84172 21 + 93265 CCAGTCATGCACTGAAACATC------ i fr3.HE591961 C 0 I 160 s oryLat2.chr23 11454155 20 + 24050845 AGAGTGCTGT-TAGTAACACC------ i oryLat2.chr23 I 5 I 2 s gadMor1.HE569363 365823 19 + 3914096 --AATGAGGTGCAGCATCATA------ i gadMor1.HE569363 I 6 C 0 s danRer7.chr15 562659 21 - 47442429 actataccacTCTAGAACATG------ i danRer7.chr15 I 2 I 3 s petMar1.Contig73717 4235 13 + 5062 ACTGTGGGACGCT-------------- i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e latCha1.JH128489 44775 1 + 444037 I e gasAcu1.chrI 1143297 207 + 28185914 T e ornAna1.Contig28798 9761 0 + 11539 I a score=731.000000 s mm10.chrUn_GL456394 20662 8 + 24323 gagtactg s sarHar1.chr4_GL857018_random 639439 8 + 2299050 TTACATTG i sarHar1.chr4_GL857018_random C 0 C 0 s galGal4.chr2 96304439 8 + 148809762 GGGCTTTG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 108639933 8 + 175225315 gggcactg i taeGut1.chrUn C 0 n 0 s melUnd1.JH540822 406 8 - 1027 CAGCCCCA i melUnd1.JH540822 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr15 562680 3 - 47442429 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 365842 0 + 3914096 C e petMar1.Contig73717 4248 0 + 5062 C e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84193 160 + 93265 I e gasAcu1.chrI 1143297 207 + 28185914 T e xenTro3.GL173416 399001 0 + 427269 C e oryLat2.chr23 11454175 2 + 24050845 I e chrPic1.JH584847 1381232 0 - 2272089 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-12586.000000 s mm10.chrUn_GL456394 20670 12 + 24323 ttacaccacagt s sarHar1.chr4_GL857018_random 639447 12 + 2299050 GTGTAACACAAT i sarHar1.chr4_GL857018_random C 0 N 0 s galGal4.chr2 96304447 12 + 148809762 AGACCTCACAAC i galGal4.chr2 C 0 C 0 s taeGut1.chr8 27561029 12 + 27993427 GGACGCTCCAGC i taeGut1.chr8 n 0 C 0 s melUnd1.JH540822 414 12 - 1027 TCATCCCCCTAT i melUnd1.JH540822 C 0 C 0 s chrPic1.JH584847 1381232 6 - 2272089 ------CCCGGT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399001 12 + 427269 TGATATTACTGT i xenTro3.GL173416 C 0 C 0 s oryLat2.chr23 11454177 6 + 24050845 ---CATACT--- i oryLat2.chr23 I 2 C 0 s gadMor1.HE569363 365842 6 + 3914096 ---TATAAC--- i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562683 7 - 47442429 --ACATCAC--- i danRer7.chr15 I 3 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e petMar1.Contig73717 4248 0 + 5062 C e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84193 160 + 93265 I e gasAcu1.chrI 1143297 207 + 28185914 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-83432.000000 s mm10.chrUn_GL456394 20682 32 + 24323 ga------agcacagtg---acaacaccgt------ggagcaataac s galGal4.chr2 96304459 32 + 148809762 GG------GGCACACTG---CCTAAATAAT------GGACCTGTTAC i galGal4.chr2 C 0 C 0 s taeGut1.chr8 27561041 22 + 27993427 AG---------ACactg---------ggat------gctccagctg- i taeGut1.chr8 C 0 C 0 s melUnd1.JH540822 426 43 - 1027 AGGG----GGcccatagcaccctataggaccccatagcaccctatag i melUnd1.JH540822 C 0 C 0 s chrPic1.JH584847 1381238 33 - 2272089 GG----------TAGTG---CAGAAATGTCACCCTGGCAGCACATG- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399013 33 + 427269 --GG----GGCCCAATG--------ATATTACTGTGGGGCCCAATGA i xenTro3.GL173416 C 0 C 0 s oryLat2.chr23 11454183 36 + 24050845 ---GAA--ACGGCGTTACTTCCAACACTGTCGTTCAGTACc------ i oryLat2.chr23 C 0 n 0 s gadMor1.HE569363 365848 34 + 3914096 ---GAGGTGCAGCATCA----TGATAACGAGTTGCAGCATC------ i gadMor1.HE569363 C 0 I 6 s danRer7.chr15 562690 34 - 47442429 ---ACTATACCACTTTA----GAACACGATGACATCACAAA------ i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4248 5 + 5062 -----------CTATC------------------------------- i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84193 160 + 93265 I e gasAcu1.chrI 1143297 207 + 28185914 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-2880.000000 s mm10.chrUn_GL456394 20714 16 + 24323 accattgtggagcaca s galGal4.chr2 96304491 16 + 148809762 GTCACAATGCTGCTCT i galGal4.chr2 C 0 C 0 s taeGut1.chr8 27561063 16 + 27993427 gACACTGGGATGCTCC i taeGut1.chr8 C 0 C 0 s melUnd1.JH540822 469 16 - 1027 gaccccatagcaccct i melUnd1.JH540822 C 0 C 0 s chrPic1.JH584847 1381271 11 - 2272089 -----CAAAGTGCCCT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399046 16 + 427269 TATACTGTGGGGCCCA i xenTro3.GL173416 C 0 C 0 s gadMor1.HE569363 365888 6 + 3914096 ----------AATGAG i gadMor1.HE569363 I 6 I 10 s danRer7.chr15 562724 16 - 47442429 AACACTCTAGAACAAG i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4253 16 + 5062 ACCACTGTGGGACGCt i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84193 160 + 93265 I e gasAcu1.chrI 1143297 207 + 28185914 T e oryLat2.chr23 11454219 0 + 24050845 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-35508.000000 s mm10.chrUn_GL456394 20730 18 + 24323 g--tgacagcacattgga--------gc s galGal4.chr2 96304507 18 + 148809762 A--TGACGTCACAATGCT--------GC i galGal4.chr2 C 0 C 0 s taeGut1.chr8 27561079 28 + 27993427 AGCGGACACTGGGATGCTCCAGGTGGAC i taeGut1.chr8 C 0 C 0 s melUnd1.JH540822 485 18 - 1027 ataggaccccatagcacc---------- i melUnd1.JH540822 C 0 N 0 s chrPic1.JH584847 1381282 1 - 2272089 C--------------------------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399062 17 + 427269 A--TGATA-TACTGTGGG--------GC i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84353 18 + 93265 --GAAACATCCCCTTCGT--------GC i fr3.HE591961 I 160 C 0 s gadMor1.HE569363 365904 15 + 3914096 -----AAGTTAACGAGGT--------GT i gadMor1.HE569363 I 10 I 3 s danRer7.chr15 562740 18 - 47442429 --TTTACATCACACTAGA--------AC i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4269 18 + 5062 --ctatcaccactggggg--------ac i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e latCha1.JH128489 44775 1 + 444037 I e gasAcu1.chrI 1143297 207 + 28185914 T e oryLat2.chr23 11454219 0 + 24050845 I e ornAna1.Contig28798 9761 0 + 11539 I a score=2340.000000 s mm10.chrUn_GL456394 20748 8 + 24323 acagtaac s galGal4.chr2 96304525 8 + 148809762 ACAGAGAT i galGal4.chr2 C 0 C 0 s taeGut1.chr8 27561107 8 + 27993427 ACTGGGAT i taeGut1.chr8 C 0 C 0 s xenTro3.GL173416 399079 8 + 427269 CCAATAAC i xenTro3.GL173416 C 0 T 357 s fr3.HE591961 84371 8 + 93265 ACTGAAAC i fr3.HE591961 C 0 C 0 s gasAcu1.chrVI 1393668 8 - 17083675 ACTGTGAC i gasAcu1.chrVI I 652 C 0 s gadMor1.HE569363 365922 5 + 3914096 ---ATCAT i gadMor1.HE569363 I 3 C 0 s danRer7.chr15 562758 8 - 47442429 ACAAGAAT i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4287 8 + 5062 gctttatc i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e latCha1.JH128489 44775 1 + 444037 I e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381283 0 - 2272089 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-2619.000000 s mm10.chrUn_GL456394 20756 3 + 24323 acc s galGal4.chr2 96304533 3 + 148809762 GAC i galGal4.chr2 C 0 C 0 s taeGut1.chr8 27561115 3 + 27993427 GCT i taeGut1.chr8 C 0 C 0 s xenTro3.GL173416 398730 3 + 427269 ATT i xenTro3.GL173416 T 357 C 0 s fr3.HE591961 84379 3 + 93265 CTC i fr3.HE591961 C 0 C 0 s gasAcu1.chrVI 1393676 3 - 17083675 AGA i gasAcu1.chrVI C 0 C 0 s gadMor1.HE569363 365927 3 + 3914096 GTT i gadMor1.HE569363 C 0 C 0 s danRer7.chr15 562766 3 - 47442429 ATG i danRer7.chr15 C 0 C 0 s petMar1.Contig73717 4295 3 + 5062 acc i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e latCha1.JH128489 44775 1 + 444037 I e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381283 0 - 2272089 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-126165.000000 s mm10.chrUn_GL456394 20759 83 + 24323 -acagTGGGGCATTGTGATAACAA----AG-------TTGAACACTG--TTACAACAC-------------AGTGGA---------------------------GCACTATGACAGAACAGTG-------GAGCACTGTGACA--C s galGal4.chr2 96304536 129 + 148809762 -AAAGTGGGGCTTTTTGACTTCAC----AGATGATCTCAGG----TG--TCacaatgtgttttttttgtggCGTCCATATAGGGCTCAGTGACGTGTGAACGGGGCTGCGTGGCATCACAATA----TGGGGTCTTTGTGACG--T i galGal4.chr2 C 0 C 0 s taeGut1.chr8 27561118 61 + 27993427 -CCAGTTGGACACTGGGAAGCTCC----AG-------CAGA----CA--CTGGAATGC---------------TCCA---------------------------GCT-----------------------GGACACTGGGACA--C i taeGut1.chr8 C 0 n 0 s chrPic1.JH584847 1381283 90 - 2272089 ---------GCTGTGGCACAGCACCATAAG-------CTGG----TG--TCCATACGC-----TGCTGCAGCATCGA---------------------------GCACAACAACATCATGACAACCCAGGCAGCAGCATGGCA--C i chrPic1.JH584847 C 0 I 1 s xenTro3.GL173416 398733 61 + 427269 -ACTGTGGGGCCCAATGATA-TAC----TG-------TGGG---------------------------------------------------------------GCCCAATGATATTACTGTG-------GGGCCCAATGATA--T i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84382 83 + 93265 -CCAAACGTGCACTGAAACC-TCC----CA-------AACG----TGCACTGAAACATC----------CCCTTCGT---------------------------GCACTGAAACCTCCCAAAC-------GTGCACTGAAACC--T i fr3.HE591961 C 0 I 3 s gasAcu1.chrVI 1393679 85 - 17083675 -GAAGAGGTGCACTGTGGCA-GAG----AG-------GAGG----TGCACCGTGACAGA----------GAGGAGGT---------------------------GCACTGTGACAGAGAGGAG-------GTGCACTGTGACTGGG i gasAcu1.chrVI C 0 I 3 s gadMor1.HE569363 365930 85 + 3914096 -AACGAGGTGCA--GCATCA-TGT----AT-------AACG----AG--CTGCAGCATC----ATCTATAACGAGGT---------------------------GCAGCATCATGTTAACGAG-------ATGCAGCATCATG--T i gadMor1.HE569363 C 0 I 3 s danRer7.chr15 562769 68 - 47442429 -ATGacatcacactataccactct----ag-------aaca----tg----ataacatc---------------------------------------------acactacaccactctaga----------acatgatgac---t i danRer7.chr15 C 0 I 3 s petMar1.Contig73717 4298 86 + 5062 actggggggacGATCTATCATCAC----TG------TGAGA----CG--Ctctatcacc--------actggggggg---------------------------acgctctatcaccactggg-------ggacgctctatca--c i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e latCha1.JH128489 44775 1 + 444037 I e oryLat2.chr23 11454219 0 + 24050845 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-11272.000000 s mm10.chrUn_GL456394 20842 11 + 24323 ---CAGAGTGGAGC- s galGal4.chr2 96304665 9 + 148809762 ---CACAGTGGA--- i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 1381374 10 - 2272089 ---TGGAGGGGA-T- i chrPic1.JH584847 I 1 C 0 s xenTro3.GL173416 398794 11 + 427269 ---TACTGTGGGGC- i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84468 9 + 93265 ---AAACGTGCA--- i fr3.HE591961 I 3 C 0 s gasAcu1.chrVI 1393767 9 - 17083675 ---GGAGGTGCA--- i gasAcu1.chrVI I 3 C 0 s gadMor1.HE569363 366018 9 + 3914096 ---CGAGGTGCA--- i gadMor1.HE569363 I 3 n 3 s danRer7.chr15 562840 9 - 47442429 ---cactatacc--- i danRer7.chr15 I 3 I 3 s petMar1.Contig73717 4384 13 + 5062 cactgggggggA--C i petMar1.Contig73717 C 0 I 38 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e taeGut1.chr8 27561179 0 + 27993427 I e latCha1.JH128489 44775 1 + 444037 I e oryLat2.chr23 11454219 0 + 24050845 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-324.000000 s mm10.chrUn_GL456394 20853 1 + 24323 A s galGal4.chr2 96304674 1 + 148809762 A i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 1381384 1 - 2272089 G i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398805 1 + 427269 C i xenTro3.GL173416 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr15 562849 3 - 47442429 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e taeGut1.chr8 27561179 0 + 27993427 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84477 0 + 93265 C e gasAcu1.chrVI 1393776 0 - 17083675 C e oryLat2.chr23 11454219 0 + 24050845 I e ornAna1.Contig28798 9761 0 + 11539 I a score=4706.000000 s mm10.chrUn_GL456394 20854 8 + 24323 CTTTAACA s galGal4.chr2 96304675 8 + 148809762 CTGTGTGA i galGal4.chr2 C 0 I 2 s chrPic1.JH584847 1381385 8 - 2272089 CTGTGGCA i chrPic1.JH584847 C 0 n 0 s xenTro3.GL173416 398806 8 + 427269 CAATGATA i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84477 8 + 93265 CTGAAACA i fr3.HE591961 C 0 C 0 s gasAcu1.chrVI 1393776 8 - 17083675 CTGTGACA i gasAcu1.chrVI C 0 C 0 s danRer7.chr15 562852 8 - 47442429 ctagaaca i danRer7.chr15 I 3 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e taeGut1.chr8 27561179 0 + 27993427 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e oryLat2.chr23 11454219 0 + 24050845 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-3400.000000 s mm10.chrUn_GL456394 20862 18 + 24323 GTACAGTAGAGCACTGTG s galGal4.chr2 96304685 18 + 148809762 TCCCAATGAAGCACTGTG i galGal4.chr2 I 2 C 0 s xenTro3.GL173416 398814 18 + 427269 TTGCTGTGGGGCCCAATG i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84485 18 + 93265 TCCCCTTCGTGCACTGAA i fr3.HE591961 C 0 C 0 s gasAcu1.chrVI 1393784 18 - 17083675 GAGAGGAGGTGCACTGTG i gasAcu1.chrVI C 0 T 786 s danRer7.chr15 562860 5 - 47442429 tgatg------------- i danRer7.chr15 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e taeGut1.chr8 27561179 0 + 27993427 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=910.000000 s mm10.chrUn_GL456394 20880 1 + 24323 A s galGal4.chr2 96304703 1 + 148809762 A i galGal4.chr2 C 0 C 0 s xenTro3.GL173416 398832 1 + 427269 A i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84503 1 + 93265 A i fr3.HE591961 C 0 T 276 s danRer7.chr15 562865 1 - 47442429 a i danRer7.chr15 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e taeGut1.chr8 27561179 0 + 27993427 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e gasAcu1.chrVI 1393802 786 - 17083675 T e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=1329.000000 s mm10.chrUn_GL456394 20881 10 + 24323 CACCACAGTG s galGal4.chr2 96304704 10 + 148809762 TTCCATAATG i galGal4.chr2 C 0 C 0 s xenTro3.GL173416 398833 10 + 427269 TATTACTGTG i xenTro3.GL173416 C 0 C 0 s danRer7.chr15 562866 10 - 47442429 catcacacta i danRer7.chr15 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e taeGut1.chr8 27561179 0 + 27993427 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84504 276 + 93265 T e gasAcu1.chrVI 1393802 786 - 17083675 T e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-846.000000 s mm10.chrUn_GL456394 20891 4 + 24323 TAGC- s galGal4.chr2 96304714 4 + 148809762 CGAC- i galGal4.chr2 C 0 I 2 s danRer7.chr15 562876 4 - 47442429 -gatc i danRer7.chr15 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e taeGut1.chr8 27561179 0 + 27993427 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84504 276 + 93265 T e gasAcu1.chrVI 1393802 786 - 17083675 T e xenTro3.GL173416 398843 0 + 427269 C e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=91.000000 s mm10.chrUn_GL456394 20895 1 + 24323 A s danRer7.chr15 562880 1 - 47442429 a i danRer7.chr15 C 0 n 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e taeGut1.chr8 27561179 0 + 27993427 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84504 276 + 93265 T e gasAcu1.chrVI 1393802 786 - 17083675 T e xenTro3.GL173416 398843 0 + 427269 C e galGal4.chr2 96304718 2 + 148809762 I e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=0.000000 s mm10.chrUn_GL456394 20896 1081 + 24323 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr15 562881 0 - 47442429 n e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e taeGut1.chr8 27561179 0 + 27993427 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84504 276 + 93265 T e gasAcu1.chrVI 1393802 786 - 17083675 T e xenTro3.GL173416 398843 0 + 427269 C e galGal4.chr2 96304718 2 + 148809762 I e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=160.000000 s mm10.chrUn_GL456394 21977 3 + 24323 ACC s taeGut1.chrUn 10474207 3 - 175225315 atc i taeGut1.chrUn n 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr15 562881 0 - 47442429 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84504 276 + 93265 T e gasAcu1.chrVI 1393802 786 - 17083675 T e xenTro3.GL173416 398843 0 + 427269 C e galGal4.chr2 96304718 2 + 148809762 I e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=753.000000 s mm10.chrUn_GL456394 21980 9 + 24323 ACAGTAGAG s taeGut1.chrUn 10474210 9 - 175225315 aTAGAGGAG i taeGut1.chrUn C 0 C 0 s danRer7.chr11 44510677 9 + 46661319 ACACTATAG i danRer7.chr11 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84504 276 + 93265 T e gasAcu1.chrVI 1393802 786 - 17083675 T e xenTro3.GL173416 398843 0 + 427269 C e galGal4.chr2 96304718 2 + 148809762 I e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-392.000000 s mm10.chrUn_GL456394 21989 2 + 24323 AT s taeGut1.chrUn 10474219 2 - 175225315 GT i taeGut1.chrUn C 0 C 0 s gasAcu1.chrXVII 12308379 2 + 14603141 AC i gasAcu1.chrXVII n 786 C 0 s danRer7.chr11 44510686 1 + 46661319 -A i danRer7.chr11 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84504 276 + 93265 T e xenTro3.GL173416 398843 0 + 427269 C e galGal4.chr2 96304718 2 + 148809762 I e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=1547.000000 s mm10.chrUn_GL456394 21991 5 + 24323 TGTCA s galGal4.chr2 96304720 5 + 148809762 TGTGA i galGal4.chr2 I 2 C 0 s taeGut1.chrUn 10474221 5 - 175225315 TGTGA i taeGut1.chrUn C 0 C 0 s gasAcu1.chrXVII 12308381 5 + 14603141 TGTAT i gasAcu1.chrXVII C 0 C 0 s danRer7.chr11 44510687 5 + 46661319 TGCAT i danRer7.chr11 C 0 I 4 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e fr3.HE591961 84504 276 + 93265 T e xenTro3.GL173416 398843 0 + 427269 C e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-457.000000 s mm10.chrUn_GL456394 21996 6 + 24323 TA--AAAC s galGal4.chr2 96304725 6 + 148809762 TG--AAAA i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10474226 8 - 175225315 TGTCACAA i taeGut1.chrUn C 0 C 0 s fr3.HE591884 77366 6 + 143622 tg--aggc i fr3.HE591884 n 276 C 0 s danRer7.chr11 44510696 5 + 46661319 -A--AAAC i danRer7.chr11 I 4 I 1 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e gadMor1.HE569363 366027 3 + 3914096 I e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e gasAcu1.chrXVII 12308386 0 + 14603141 C e xenTro3.GL173416 398843 0 + 427269 C e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-13000.000000 s mm10.chrUn_GL456394 22002 9 + 24323 AGTGG--------------AGC-----A s galGal4.chr2 96304731 14 + 148809762 AATGG--------------GGCTCTCTG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10474234 28 - 175225315 AGTCGACTGTGACATTACAGGctggctg i taeGut1.chrUn C 0 C 0 s xenTro3.GL173343 478902 10 + 535221 AGTGA--------------AACAG---- i xenTro3.GL173343 n 0 C 0 s fr3.HE591884 77372 9 + 143622 agtga--------------ggca----- i fr3.HE591884 C 0 I 1 s gasAcu1.chrXVII 12308386 7 + 14603141 --TAA--------------TACA----- i gasAcu1.chrXVII C 0 I 1 s gadMor1.HE569347 2064944 9 + 2123952 agtag--------------ggtg----- i gadMor1.HE569347 T 364 I 21 s danRer7.chr11 44510702 9 + 46661319 CTTGG--------------AACA----- i danRer7.chr11 I 1 I 1 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e oryLat2.chr23 11454219 0 + 24050845 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-8802.000000 s mm10.chrUn_GL456394 22011 2 + 24323 --TG s galGal4.chr2 96304745 1 + 148809762 --T- i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10474262 2 - 175225315 --tg i taeGut1.chrUn C 0 C 0 s fr3.HE591884 77382 2 + 143622 cg-- i fr3.HE591884 I 1 C 0 s gasAcu1.chrXVII 12308394 2 + 14603141 TG-- i gasAcu1.chrXVII I 1 C 0 s oryLat2.chr7 4746549 2 - 29492121 TG-- i oryLat2.chr7 I 567 C 0 s gadMor1.HE569347 2064974 2 + 2123952 aT-- i gadMor1.HE569347 I 21 C 0 s danRer7.chr11 44510712 2 + 46661319 CA-- i danRer7.chr11 I 1 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e xenTro3.GL173343 478912 0 + 535221 C e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-10881.000000 s mm10.chrUn_GL456394 22013 15 + 24323 TGACAACATAGTG----------GA s monDom5.chr5 46750288 15 + 304825324 TGCCAATGATCTg----------gg i monDom5.chr5 N 0 C 0 s galGal4.chr2 96304746 14 + 148809762 TGTCATAGTGGGA-----------G i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10474264 15 - 175225315 tgacatcacagaa----------tg i taeGut1.chrUn C 0 C 0 s xenTro3.GL173343 478912 15 + 535221 TGAAAGCACAGGG----------TT i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 77384 15 + 143622 tggcagtgaggTA----------GC i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308396 15 + 14603141 TATCACTGCTCTG----------TA i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4746551 15 - 29492121 TGATAGTCTGATG----------GT i oryLat2.chr7 C 0 C 0 s gadMor1.HE569347 2064976 25 + 2123952 TGACAGCAGGGTGAGGGAGAGTAGG i gadMor1.HE569347 C 0 C 0 s danRer7.chr11 44510714 24 + 46661319 TGACAGCACATTA-AAACACTTGGA i danRer7.chr11 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e petMar1.Contig73717 4397 38 + 5062 I e latCha1.JH128489 44775 1 + 444037 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-12481.000000 s mm10.chrUn_GL456394 22028 9 + 24323 ACATGCAGA s monDom5.chr5 46750303 9 + 304825324 gcagtgaga i monDom5.chr5 C 0 C 0 s galGal4.chr2 96304760 9 + 148809762 TCTGTGCTG i galGal4.chr2 C 0 I 1 s taeGut1.chrUn 10474279 9 - 175225315 gCTGTGAGG i taeGut1.chrUn C 0 I 1 s xenTro3.GL173343 478927 9 + 535221 CTAGGGTGC i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 77399 9 + 143622 GCGTGGCAG i fr3.HE591884 C 0 I 5 s gasAcu1.chrXVII 12308411 9 + 14603141 TCACTGTAT i gasAcu1.chrXVII C 0 I 5 s oryLat2.chr7 4746566 7 - 29492121 TCCctct-- i oryLat2.chr7 C 0 I 2 s gadMor1.HE569347 2065001 9 + 2123952 TTGTGTTGG i gadMor1.HE569347 C 0 I 5 s danRer7.chr11 44510738 9 + 46661319 ACACTATAG i danRer7.chr11 C 0 I 23 s petMar1.Contig1556 48463 9 + 56846 ACACTGTGA i petMar1.Contig1556 n 38 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e latCha1.JH128489 44775 1 + 444037 I e chrPic1.JH584847 1381393 0 - 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-152646.000000 s mm10.chrUn_GL456394 22037 54 + 24323 CAGCACAGTGGATC-----ACTCTGACAGCACAG----------------------------TGGAGCAGTGTGA--C---------AGCACA----------GTGGA s monDom5.chr5 46750312 60 + 304825324 tggctcagtggat----------tgagag-acaggt-------------------------ctagagagggagga--cctagatccaaactaa----------ttgta i monDom5.chr5 C 0 C 0 s galGal4.chr2 96304770 72 + 148809762 ---CGCTGTTGAG-------CTCTGTCAGTGCAATC-----TGGCTTTGCAGTATATGCGAATGCAGCAATGTGA--C---------ATCACC----------ATATG i galGal4.chr2 I 1 I 3 s taeGut1.chrUn 10474289 68 - 175225315 ---CACAGAGAAG------ACACTGCCATTATAGAT---AAGggctctgtgacatcacaga--gcagctgtgtga--t---------ATCAC---------------A i taeGut1.chrUn I 1 I 24 s chrPic1.JH584847 890982 16 + 2272089 -----------------------------------------------------------CAACACAGCTA-----------------ATCAC---------------- i chrPic1.JH584847 T 366 C 0 s xenTro3.GL173343 478936 60 + 535221 -------------CAGCCCATAGTGACAGCACAGGGTTCTAGGGTGCTA--------------GTGACACAGTGA--C---------AGCACA----------GGGTT i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 77413 56 + 143622 -----TAGCGTGGCAGCGCGTGGCAGTAAGGTAG----------------------------CGTGGCAGCGCGTGGC---------AGTAAG----------GTAGC i fr3.HE591884 I 5 C 0 s gasAcu1.chrXVII 12308425 54 + 14603141 -----CACTGTATCACTGCTCTGTATCACTGTAT----------------------------TAATACACTGTAT--C---------ACTGCT----------CTATC i gasAcu1.chrXVII I 5 C 0 s oryLat2.chr7 4746575 54 - 29492121 -----tagtttgatggttctctctgatagtttga----------------------------tggttctctctga--t---------agttct----------ctctg i oryLat2.chr7 I 2 C 0 s gadMor1.HE569347 2065015 54 + 2123952 -----CAGTGGGGTGAGGTAGAGGGACAGCGGGG----------------------------TGAGGTAGAGTGA--C---------AGCAgg----------gtgag i gadMor1.HE569347 I 5 C 0 s danRer7.chr11 44510770 92 + 46661319 -----CACCATGACAGCACATTAAAAACACTTGGAAGACGATAGCAGCACATCAAAAACACTTGGAACACCATGA--C---------AGCACATCAAAAACACTTGGA i danRer7.chr11 I 23 C 0 s petMar1.Contig1556 48472 54 + 56846 -----CACCGCATGGAGACACTGTGACACCACAT----------------------------GGAGACACTGTGA--C---------ACCACA----------TGGAG i petMar1.Contig1556 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498572 0 + 38656188 C e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-28634.000000 s mm10.chrUn_GL456394 22091 41 + 24323 GTAATGTGACATCACAGTGGAGCACTGTGACAACA------AATTGG s monDom5.chr5 46750372 41 + 304825324 acactgtgccaactaattgtaacactgtgcCAACT------AGTTAT i monDom5.chr5 C 0 C 0 s melGal1.chr8 3498572 41 + 38656188 GTATTGTGACATCACAGTGGGGCACTGTTACAGCA------TAATGG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96304845 41 + 148809762 GCTTTGAGACATCACAGTGGAAATCTTTGACCACG------CCATGG i galGal4.chr2 I 3 C 0 s taeGut1.chrUn 10474381 38 - 175225315 GGgttgtgacatcacagagcag--ctgtgaaatca------cagag- i taeGut1.chrUn I 24 I 2 s chrPic1.JH584847 890998 39 + 2272089 --AATGTGATATCAGAATGTGACATAGTGACATCA------CAATAC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 478996 41 + 535221 CTAGGCTGCCAGCCCAAGGTGACACAGTGACAGCA------CAGGGT i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 77469 47 + 143622 ATGGCAGTAAGGCAGCGAGGCAGCGCGTGGCAGTAAGGTAGCGTGGC i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308479 39 + 14603141 ACTGTATTAATACACTGTATCACTGTAT--TAATA------CTTTGT i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4746629 41 - 29492121 atagtttgatggttctctctgatagtctAATGGTT------CCCTCT i oryLat2.chr7 C 0 C 0 s gadMor1.HE569347 2065069 41 + 2123952 gtagagagacagtaaggtgaaggagagggacagcA------GGGTGT i gadMor1.HE569347 C 0 C 0 s danRer7.chr11 44510862 41 + 46661319 ACACCATGACAGCACATCAAAAACACTTGGAACAC------CATGAC i danRer7.chr11 C 0 C 0 s petMar1.Contig1556 48526 41 + 56846 ACACTGTGACACCGCATGGAGACACTGTGACACTG------CATGGA i petMar1.Contig1556 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-90213.000000 s mm10.chrUn_GL456394 22132 38 + 24323 AA--------CAT------------TGTG----------ACACCAA---AGTGGAGCACTGTGACACCACA s monDom5.chr5 46750413 56 + 304825324 AAATAAGTTACAC------------TGTGCCAAGTAGCCATAACCA---ACTGTAACACTGTGCCAACTAA i monDom5.chr5 C 0 C 0 s melGal1.chrUn_GL427593 1388 27 - 2027 --------GGCAC------------AGGG----------ACACCA--------------CGTGGCACAATG i melGal1.chrUn_GL427593 n 0 C 0 s galGal4.chr2 96304886 38 + 148809762 --------GGCTC------------AGTG----------ACGTCAG---AATGGAGCATTGTGATTCCATA i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10474421 35 - 175225315 --------ggct--------------ggg----------acCTCA----AAGAGCAGACTGGGACATTACA i taeGut1.chrUn I 2 C 0 s chrPic1.JH584847 891037 17 + 2272089 ------------------------------------------------------AGCACTGTGACATCATG i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479037 38 + 535221 -----------TC------------TAGG----------GTGCCAGCCCAAGGTGACACAATGCCAGCACA i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 77516 48 + 143622 --------AGCGCGTGGCAGTAA--GGTA----------GCGTGGC---AGTGAGGCAGCGTGGCAGTAAG i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308518 40 + 14603141 --------ATCACTTCTC-------TGTA----------TCACTGT---ATTAATACACTGTATCACT--- i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4746670 43 - 29492121 --------GACATTAAGA-------TGGT----------TCTCTCT---GATAGTCTAATGGTTCCCTCTG i oryLat2.chr7 C 0 C 0 s gadMor1.HE569347 2065110 34 + 2123952 --------G----------------AGTG----------ACAGCAG---GGTGAGGTAAAGTGAAAGTAGG i gadMor1.HE569347 C 0 C 0 s danRer7.chr11 44510903 50 + 46661319 --------AGCACATCAAAAACACTTGGA----------ACACCAT---GACAGCACATCAAAAACACTTG i danRer7.chr11 C 0 C 0 s petMar1.Contig1556 48567 38 + 56846 --------GACAC------------TGTG----------ACACCAC---ATGGAGACACTGTGACACCACA i petMar1.Contig1556 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-167175.000000 s mm10.chrUn_GL456394 22170 91 + 24323 GTGAAGCAGTGTGATATCA----CAGTG---GAGC-----ACAGTGACAGCA--------CGGTGGAGGACAAAGACAGTACAGTAGAGCACTGTAAAAACACA----------TTGGAGC s monDom5.chr5 46750469 88 + 304825324 TTGCAACACTGTGCCAACT----AGTTA---TAAA-----TAAGTTACA-----------CTGTGCCAAGTAGCCATAACCAACTGTAACACTGTGCCAACTAA----------TTGCAAC i monDom5.chr5 C 0 C 0 s melGal1.chrUn_GL427593 1415 77 - 2027 ATGTGACCGTGGCACAGCAAGGGCATTGTCATGGC-----ACAGTGACA-----------C------------------CACAACATAAAGTGTGGCAATGGCA----------TCGTGGC i melGal1.chrUn_GL427593 C 0 C 0 s galGal4.chr2 96304924 70 + 148809762 ATGGGGCTCTGTGACCTCA----CAATG---TGGC-----ACACCGTAT-----------C------------------CAAAACGGAGCTCTGAGTCATCACA----------ATAGGGC i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10474456 67 - 175225315 GGGCAGCTGTATGAAATCA----CAG-G---TGGC-----CTGTTAACT-----------C------------------TCAGAatgggctgtgtgacatcaca------------ggggc i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891054 46 + 2272089 AGGAAGCACACTAACATCA----CAATA---CAGC---------------------------------------------------TAGCATGATGGTATCACA----------------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479075 91 + 535221 GGGTTCTAAGGTGCCAGGT----CAGGG---TTAC-----ACAGTCACAGCA--------CAGGGTTCTAGGGTGCCAGCCTATAGTGACACAGTGACAGCACA----------GGGTTCT i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 77564 75 + 143622 GTAGCGTGGCAGCGCATGG----CAGTA---AGGC-----AGCGAGGCAGCG--------CGTGGCA----------------GTAAGGTAGCGTGGCAGCGCG----------TGGCAGT i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308558 78 + 14603141 ---GCTCTGTA--TCATTG----TATTA---ATAC-----ACTGTATCACTGCTCTGTATCACTGTA----------------TTAATACACTGTATCACTGCT----------CTGTATC i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4746713 57 - 29492121 ATAGTTTGATGGTTCCCTC----TGATA---GTTC-----CCTCTGATAATC--------CGATG----------------------------------GTTCT----------CTGTGAT i oryLat2.chr7 C 0 C 0 s gadMor1.HE569347 2065144 66 + 2123952 GTGAGGTAGAGGGACAGCA----GGGTG---AGGT-----AGAGTGACAGCA--------CAGTG-------------------------AGAGTGACAGTAGG----------GTGAGGT i gadMor1.HE569347 C 0 C 0 s danRer7.chr11 44510953 95 + 46661319 GAAAACTAAAGATGCATAT----TAAAA---ACACTTGAAACACTGACAGCA--------GACTAAAC-----------ACACTTGGAACACCACAGAAGCACATTAAAAACACTTGGAAG i danRer7.chr11 C 0 C 0 s petMar1.Contig87884 402 91 + 4648 ATGGGGCGCTCTGACATCA----CAATG---GGGA-----GCTCTGACATCG--------CAATGGGGCGCTCTGACATCGCAATGGGGCTCTCTGAGATCGCA----------ATGGAGC i petMar1.Contig87884 T 384 n 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-41890.000000 s mm10.chrUn_GL456394 22261 19 + 24323 A-TGTGACA-----CTATAGGGGAG s monDom5.chr5 46750557 25 + 304825324 ACTGTGCCAACTAGTTATAAATAAG i monDom5.chr5 C 0 I 3 s melGal1.chrUn_GL427593 1492 20 - 2027 CCTGTGACA-----CCATGATGGGA i melGal1.chrUn_GL427593 C 0 I 16 s galGal4.chr2 96304994 17 + 148809762 TCTGGGACG-----TAACAATG--- i galGal4.chr2 C 0 I 14 s taeGut1.chrUn 10474523 20 - 175225315 tgtgtgaca-----tcacagggacT i taeGut1.chrUn C 0 I 1336 s chrPic1.JH584847 891100 12 + 2272089 -ATCTCACA-----CAGT------- i chrPic1.JH584847 C 0 I 10 s xenTro3.GL173343 479166 20 + 535221 AGGGTGCCAGC---CCATAGTGA-- i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 77639 10 + 143622 AAGGTAGCG-----T---------- i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308636 10 + 14603141 ACTGTATTA-----A---------- i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4746770 10 - 29492121 ACTCTGATG-----G---------- i oryLat2.chr7 C 0 C 0 s gadMor1.HE569347 2065210 10 + 2123952 AGAGGGACA-----G---------- i gadMor1.HE569347 C 0 C 0 s danRer7.chr11 44511048 10 + 46661319 ACGATAGCA-----G---------- i danRer7.chr11 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e petMar1.Contig87884 493 0 + 4648 I e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-33190.000000 s mm10.chrUn_GL456394 22280 15 + 24323 ----------CACAGAGACAGACAG s monDom5.chr5 46750585 15 + 304825324 ----------CATTGTGCCAAGTAG i monDom5.chr5 I 3 C 0 s melGal1.chrUn_GL427593 1528 11 - 2027 ----------CACAG--CAATG--G i melGal1.chrUn_GL427593 I 16 C 0 s galGal4.chr2 96305025 5 + 148809762 ----------CACAG---------- i galGal4.chr2 I 14 C 0 s chrPic1.JH584847 891122 13 + 2272089 ----------TATAGTGCTAGG--A i chrPic1.JH584847 I 10 C 0 s xenTro3.GL173343 479186 13 + 535221 ----------CACAGGGACAGC--A i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 77649 15 + 143622 GGCAGCGCGTGGCAG---------- i fr3.HE591884 C 0 I 23 s gasAcu1.chrXVII 12308646 15 + 14603141 TACACTGTATCACTG---------- i gasAcu1.chrXVII C 0 I 23 s oryLat2.chr7 4746780 13 - 29492121 TTC--CCTCTGATAG---------- i oryLat2.chr7 C 0 I 39 s danRer7.chr11 44511058 15 + 46661319 CACATTAAAAAAAAC---------- i danRer7.chr11 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE569347 2065220 0 + 2123952 C e taeGut1.chrUn 10474543 1336 - 175225315 I e petMar1.Contig87884 493 0 + 4648 I e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-48287.000000 s mm10.chrUn_GL456394 22295 15 + 24323 CA------------------CAGT---------TG-AGCACTA s monDom5.chr5 46750600 21 + 304825324 CCA-------------TAACCAAC---------TGTAATACTG i monDom5.chr5 C 0 C 0 s melGal1.chrUn_GL427593 1539 16 - 2027 CG------------------TTGT---------CGTGGCACAG i melGal1.chrUn_GL427593 C 0 C 0 s galGal4.chr2 96305030 10 + 148809762 ---------------------------------TGTGGCTCAG i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 891135 18 + 2272089 CA------------------TTGCAA-------GGCAATGCAA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479199 34 + 535221 CAGGGTTCTAGGGTGCCAGCCCAT---------AGTGACACAG i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 77687 13 + 143622 -------------------------CAGTAA--GGTAGCA--- i fr3.HE591884 I 23 I 8 s gasAcu1.chrXVII 12308684 8 + 14603141 -------------------------C-------TGTATCA--- i gasAcu1.chrXVII I 23 I 8 s gadMor1.HE569347 2065220 2 + 2123952 --------------------------------------CA--- i gadMor1.HE569347 C 0 I 9 s danRer7.chr11 44511073 12 + 46661319 ----------------------------TTGCTTGGAACA--- i danRer7.chr11 C 0 I 3 e tetNig2.chr21_random 2794303 867 - 3311323 I e taeGut1.chrUn 10474543 1336 - 175225315 I e petMar1.Contig87884 493 0 + 4648 I e latCha1.JH128489 44775 1 + 444037 I e oryLat2.chr7 4746793 39 - 29492121 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-44773.000000 s mm10.chrUn_GL456394 22310 35 + 24323 TGACAATAGAGTGGAAGACTTTGATGTCATAGTTG----------- s monDom5.chr5 46750621 32 + 304825324 TGCCAACTAGTTATAAA---TAAGTTACACTGTGC----------- i monDom5.chr5 C 0 C 0 s melGal1.chrUn_GL427593 1555 15 - 2027 CGATGCCTTGGCACG------------------------------- i melGal1.chrUn_GL427593 C 0 I 50 s galGal4.chr2 96305040 15 + 148809762 TGATGTCGTAGTGGG------------------------------- i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 891153 15 + 2272089 TGACATCATAATGCT------------------------------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479233 15 + 535221 TGACAGCACAGGGTT------------------------------- i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 77708 17 + 143622 AGGCAGCGAGGCAGC--------------------GC--------- i fr3.HE591884 I 8 C 0 s gasAcu1.chrXVII 12308700 25 + 14603141 ATACACTGTATCACT--------------------GCTCTGTATC- i gasAcu1.chrXVII I 8 C 0 s oryLat2.chr7 4746832 25 - 29492121 tGATAGTCTAATGGT--------------------TCCCTCTGAT- i oryLat2.chr7 I 39 C 0 s gadMor1.HE569347 2065231 17 + 2123952 TGACAGTAGGATGAG--------------------GT--------- i gadMor1.HE569347 I 9 C 0 s danRer7.chr11 44511088 26 + 46661319 TAACAGCACACTAAA--------------------ACACTTGGACG i danRer7.chr11 I 3 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e taeGut1.chrUn 10474543 1336 - 175225315 I e petMar1.Contig87884 493 0 + 4648 I e latCha1.JH128489 44775 1 + 444037 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-137.000000 s mm10.chrUn_GL456394 22345 1 + 24323 A s monDom5.chr5 46750653 1 + 304825324 C i monDom5.chr5 C 0 C 0 s latCha1.JH126584 1876138 1 - 4223152 a i latCha1.JH126584 n 1 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr11 44511114 0 + 46661319 C e melGal1.chrUn_GL427593 1570 50 - 2027 I e gadMor1.HE569347 2065248 0 + 2123952 C e taeGut1.chrUn 10474543 1336 - 175225315 I e petMar1.Contig87884 493 0 + 4648 I e fr3.HE591884 77725 0 + 143622 C e gasAcu1.chrXVII 12308725 0 + 14603141 C e xenTro3.GL173343 479248 0 + 535221 C e galGal4.chr2 96305055 0 + 148809762 C e oryLat2.chr7 4746857 0 - 29492121 C e chrPic1.JH584847 891168 0 + 2272089 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-17796.000000 s mm10.chrUn_GL456394 22346 23 + 24323 GCAGTGTGACAGCAGAGT------------------GCAGC s monDom5.chr5 46750654 23 + 304825324 AAGGAGCCATAACCAACT------------------GTAAT i monDom5.chr5 C 0 C 0 s melGal1.chr8 3498613 23 + 38656188 GCTCTGTGACATCACAAT------------------GCGGC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96305055 23 + 148809762 TCTCTGTGACGTCACAGT------------------TGAAC i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 891168 23 + 2272089 GCACTATGACATCAAAAT------------------ACAGT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479248 23 + 535221 CTAGGGTGCCAGCCCATA------------------GTGAC i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876139 23 - 4223152 acagctggacagctgtgt------------------gtgtg i latCha1.JH126584 C 0 C 0 s fr3.HE591884 77725 16 + 143622 -----GTGGCAGTAAG--------------------GTagc i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308725 21 + 14603141 --ACTGTATTAATACACT------------------GTATC i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4746857 21 - 29492121 --AGTTTGATGGTTCCCT------------------CTGAT i oryLat2.chr7 C 0 C 0 s gadMor1.HE569347 2065248 25 + 2123952 --AGAGTGACAGCACGGTGAGA--------------GCGAC i gadMor1.HE569347 C 0 C 0 s danRer7.chr11 44511114 39 + 46661319 --GCCATAGCAACACATTAAAAAAACTTAGAAGACCATAGC i danRer7.chr11 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e taeGut1.chrUn 10474543 1336 - 175225315 I e petMar1.Contig87884 493 0 + 4648 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-5685.000000 s mm10.chrUn_GL456394 22369 2 + 24323 -AC s monDom5.chr5 46750677 2 + 304825324 -AC i monDom5.chr5 C 0 C 0 s melGal1.chr8 3498636 2 + 38656188 -TC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96305078 2 + 148809762 -AC i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 891191 2 + 2272089 -GC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479271 2 + 535221 -AC i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876162 2 - 4223152 -gt i latCha1.JH126584 C 0 I 2 s fr3.HE591884 77741 2 + 143622 -gt i fr3.HE591884 C 0 I 5 s gasAcu1.chrXVII 12308746 2 + 14603141 -AC i gasAcu1.chrXVII C 0 I 5 s oryLat2.chr7 4746878 2 - 29492121 -AG i oryLat2.chr7 C 0 I 5 s gadMor1.HE569347 2065273 2 + 2123952 -AG i gadMor1.HE569347 C 0 I 5 s danRer7.chr11 44511153 2 + 46661319 -AA i danRer7.chr11 C 0 I 5 s petMar1.Contig22037 5473 2 + 10185 AA- i petMar1.Contig22037 n 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e taeGut1.chrUn 10474543 1336 - 175225315 I e ornAna1.Contig28798 9761 0 + 11539 I a score=1872.000000 s mm10.chrUn_GL456394 22371 16 + 24323 TGTGACACCATAGTGG s monDom5.chr5 46750679 16 + 304825324 TGTGCCAACTAACTAC i monDom5.chr5 C 0 C 0 s melGal1.chr8 3498638 16 + 38656188 TGTGATGTCATAATGG i melGal1.chr8 C 0 I 58 s galGal4.chr2 96305080 14 + 148809762 --TAGCCTCGCAGTGG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10475879 16 - 175225315 tgtgacatcacagatc i taeGut1.chrUn I 1336 C 0 s chrPic1.JH584847 891193 16 + 2272089 TATGATATCACAATGT i chrPic1.JH584847 C 0 I 368 s xenTro3.GL173343 479273 16 + 535221 AGTGACAGCACAGGGT i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876166 16 - 4223152 gggagcCTTGCACTGT i latCha1.JH126584 I 2 I 2 s fr3.HE591884 77748 16 + 143622 tgaggcagcgtggcag i fr3.HE591884 I 5 C 0 s gasAcu1.chrXVII 12308753 16 + 14603141 TGTATCACTGTATTAA i gasAcu1.chrXVII I 5 C 0 s oryLat2.chr7 4746885 16 - 29492121 TCTGATAGTTTGATGG i oryLat2.chr7 I 5 C 0 s gadMor1.HE569347 2065280 16 + 2123952 TGAGGTAGAGGGACAG i gadMor1.HE569347 I 5 C 0 s danRer7.chr11 44511160 16 + 46661319 TGGAATATCATATCCA i danRer7.chr11 I 5 C 0 s petMar1.Contig22037 5475 16 + 10185 TGTTTCAGCACAGTGA i petMar1.Contig22037 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-13449.000000 s mm10.chrUn_GL456394 22387 8 + 24323 AGCATTGT s monDom5.chr5 46750695 8 + 304825324 AACACTGT i monDom5.chr5 C 0 C 0 s melGal1.chrUn_GL427593 1620 8 - 2027 GAGGCGAT i melGal1.chrUn_GL427593 I 50 C 0 s galGal4.chr2 96305094 8 + 148809762 GACTCTAT i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10475895 7 - 175225315 -aGGTTGT i taeGut1.chrUn C 0 C 0 s xenTro3.GL173343 479289 5 + 535221 ---TCTAG i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876184 8 - 4223152 AACAGTAT i latCha1.JH126584 I 2 C 0 s fr3.HE591884 77764 8 + 143622 cgagtggc i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308769 8 + 14603141 TACACTGT i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4746901 8 - 29492121 TTCTCTCT i oryLat2.chr7 C 0 C 0 s gadMor1.HE569347 2065296 8 + 2123952 TAGGGTGA i gadMor1.HE569347 C 0 n 0 s danRer7.chr11 44511176 8 + 46661319 CTCACTAA i danRer7.chr11 C 0 I 18 s petMar1.Contig22037 5491 6 + 10185 AACAAT-- i petMar1.Contig22037 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e chrPic1.JH584847 891209 368 + 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-197201.000000 s mm10.chrUn_GL456394 22395 82 + 24323 GACAGCAGACTGCAG--------CACTG--TGA--------------CAA--------AAC--AGT---GGAAC----ATTGTGCCACCACAGTGGAG----CACTCTGTCACC------------------ACAGTGGAGAAGT s monDom5.chr5 46750703 118 + 304825324 GCCAACTAGTTATAAATAAGTTACACTG--TGC--------------CAAGTAGCCATAACCAACT---GTAAC----ACTGTGCCAACTAACTACAA----CACTGTGCCAACTAGTTATAAATAAGTTACACTGTGCCAAGTA i monDom5.chr5 C 0 C 0 s melGal1.chrUn_GL427593 1628 70 - 2027 GG-----AATTGCGG--------CACTG--TGA--------------CAC--------CAT--GAT---GGGAC----------ATGGCACAGTGACAGCATCGTCATGGCACC------------------ATGAA-----TTG i melGal1.chrUn_GL427593 C 0 I 31 s galGal4.chr2 96305102 85 + 148809762 GATGTCTGAATGGGG--------CGCTG--TGT--------------CAT--------TAC--AGTATCGGGAC----TTTGGGACGTCACAATGAAA----CTCTGTGACATC------------------ACAGAGGGGCTCA i galGal4.chr2 C 0 I 21 s taeGut1.chrUn 10475902 80 - 175225315 GACATC-ATATAGTC--------AGCTG--AGA--------------CAT--------CAC--TGC---TCTAt----tatgtgacatcacagagcag-----gctgtgacatc------------------acaggatgcctat i taeGut1.chrUn C 0 I 20 s xenTro3.GL173343 479294 85 + 535221 GGTGCCAGGCCATAG-----TGACACAG--TGA--------------CAG--------CAC--AGG---GTTCT----AGGGTGCCAGCCCATAGTGA----CACAGTGACAGC------------------ACAGGGTTCTAGG i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876192 79 - 4223152 GGGTGCACATTAGAG--------CAGTA--TGG--------------CG---------CAT--AGT---AGAGC----AATATGGTG-CACAGTAGAT----CAGTATGGCA-C------------------AAAGTAGAGCAGT i latCha1.JH126584 C 0 C 0 s fr3.HE591884 77772 38 + 143622 ggtaaggtagcgtgg--------cagtg--agg--------------cag--------cgt--ggc---ggtaa-------------------------------g--------------------------------------- i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308777 58 + 14603141 ATTAATACACTGTAT--------CACTGCTCTG--------------TAT--------CAC--TGT---ATTAA----TACTT-----TGTATCACTT----CTCT--------------------------------------- i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4746909 61 - 29492121 GATAGTCTAATGGTT--------CCCTC--TGA--------------TAT--------TCT--CAT---GGTTC----TCTCTGATGGTGTAATGGTT----CCCT--------------------------------------- i oryLat2.chr7 C 0 C 0 s gadMor1.HE571807 12603 61 - 23136 TACACCAGACTGTTG--------CACTG--TTA--------------TAG--------CAG--ACT---GTTGT----ACTGTTACAGCAGACTGTTA----TACT--------------------------------------- i gadMor1.HE571807 n 0 C 0 s danRer7.chr11 44511202 52 + 46661319 GACAGCACACTAAAA--------CACTT----G--------------GAA--------CAC--CAT---AACAA----ACACT-----TGGAACACCA----T--A--------------------------------------- i danRer7.chr11 I 18 C 0 s petMar1.Contig22037 5497 79 + 10185 ----GAATGTTTCAG--------CACAG--TGAAAAAATGAATGTTTCAG--------CAC--AGT---GAAACAATGAATGTTTCAGCACAGTGAAA----CAATGAAT----------------------------------- i petMar1.Contig22037 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e chrPic1.JH584847 891209 368 + 2272089 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-92074.000000 s mm10.chrUn_GL456394 22477 32 + 24323 GTGACA------GTAGAGTGGAGCACA------GTG------TCAGCAAT s monDom5.chr5 46750821 32 + 304825324 GCCATA------ACCAACTGTAACACT------GTG------CCAACTAA i monDom5.chr5 C 0 C 0 s melGal1.chrUn_GL427593 1729 36 - 2027 GCGACTCC-GAGGCACAAAGTGCGGCA------ATG------GCATCGT- i melGal1.chrUn_GL427593 I 31 C 0 s galGal4.chr2 96305208 32 + 148809762 GTGATT------ACACAATGGGGATCT------ACA------ACATCATA i galGal4.chr2 I 21 C 0 s taeGut1.chrUn 10476002 31 - 175225315 gtgagG------TCAAAGAGTGTG-CT------GTG------ACATTATA i taeGut1.chrUn I 20 C 0 s chrPic1.JH584847 891577 25 + 2272089 GTGAAGCAGGATGAAGAGAGTGTG-------------------------A i chrPic1.JH584847 I 368 C 0 s xenTro3.GL173343 479379 32 + 535221 GTGCCA------GCCCATAGTGACACA------GTG------ACAGCACA i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876271 35 - 4223152 ---------GTGGTACACAACAGAACA------GTATGGAGCACAGTAGA i latCha1.JH126584 C 0 C 0 s fr3.HE591884 77810 11 + 143622 ---------------------------------gta------gcgtggca i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308835 11 + 14603141 ---------------------------------GTA------TCACTGTA i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4746970 11 - 29492121 ---------------------------------CTG------ACATTTAG i oryLat2.chr7 C 0 C 0 s gadMor1.HE571807 12664 11 - 23136 ---------------------------------GTT------ACAGGATA i gadMor1.HE571807 C 0 C 0 s danRer7.chr11 44511254 11 + 46661319 ---------------------------------GCA------GCACACAA i danRer7.chr11 C 0 C 0 s petMar1.Contig22037 5576 36 + 10185 --------GTTTCAGCACAGTGAAACAATGAATGTT------TCAGCACA i petMar1.Contig22037 C 0 I 25 e tetNig2.chr21_random 2794303 867 - 3311323 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-49777.000000 s mm10.chrUn_GL456394 22509 1 + 24323 G--------------------- s monDom5.chr5 46750853 1 + 304825324 T--------------------- i monDom5.chr5 C 0 C 0 s galGal4.chr2 96305240 1 + 148809762 G--------------------- i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10476033 1 - 175225315 G--------------------- i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891602 1 + 2272089 G--------------------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479411 1 + 535221 G--------------------- i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876306 1 - 4223152 G--------------------- i latCha1.JH126584 C 0 I 5 s fr3.HE591884 77821 17 + 143622 gtaa-----ggtagcgtggcag i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308846 22 + 14603141 TTAATACTTTGTATCACTGCTC i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4746981 22 - 29492121 ATGGTTCTGTCTGATAGTCTGA i oryLat2.chr7 C 0 C 0 s gadMor1.HE571807 12675 20 - 23136 ATTATAC--TGTTATAGCAGAC i gadMor1.HE571807 C 0 C 0 s danRer7.chr11 44511265 21 + 46661319 AAAACACT-TGGAAAAGCAAAG i danRer7.chr11 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chrUn_GL427593 1765 0 - 2027 C e petMar1.Contig22037 5612 25 + 10185 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-156.000000 s mm10.chrUn_GL456394 22510 1 + 24323 T s echTel1.scaffold_252543 6890 1 - 8668 T i echTel1.scaffold_252543 N 0 N 0 s monDom5.chr5 46750854 1 + 304825324 T i monDom5.chr5 C 0 C 0 s galGal4.chr2 96305241 1 + 148809762 T i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10476034 1 - 175225315 G i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891603 1 + 2272089 G i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479412 1 + 535221 G i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876312 1 - 4223152 T i latCha1.JH126584 I 5 C 0 s fr3.HE591884 77838 1 + 143622 t i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308868 1 + 14603141 T i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4747003 1 - 29492121 T i oryLat2.chr7 C 0 C 0 s gadMor1.HE571807 12695 1 - 23136 T i gadMor1.HE571807 C 0 C 0 s danRer7.chr11 44511286 1 + 46661319 C i danRer7.chr11 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chrUn_GL427593 1765 0 - 2027 C e petMar1.Contig22037 5612 25 + 10185 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-19387.000000 s mm10.chrUn_GL456394 22511 19 + 24323 GGAGCACTGTG-----ATAGCACA s monDom5.chr5 46750855 19 + 304825324 GCAACACTGTG-----CCAACTAG i monDom5.chr5 C 0 C 0 s melGal1.chrUn_GL427593 1765 17 - 2027 --GGCACTGTG-----ACACCAAA i melGal1.chrUn_GL427593 C 0 C 0 s galGal4.chr2 96305242 19 + 148809762 GGGGCTCTGTG-----GCATCACA i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10476035 19 - 175225315 GTGGCCGTGTT-----ACATCACT i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891604 19 + 2272089 GAGGTAGAGGG-----TTAGAGta i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479413 19 + 535221 GTTCTAGGGTG-----CCAGCCCA i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876313 16 - 4223152 GGCATACTG--------CAGACCA i latCha1.JH126584 C 0 C 0 s fr3.HE591884 77839 19 + 143622 gaggcagcgtg-----gcagcgcg i fr3.HE591884 C 0 C 0 s gasAcu1.chrXVII 12308869 24 + 14603141 GTATCACTGTATTAATACACTGTA i gasAcu1.chrXVII C 0 C 0 s oryLat2.chr7 4747004 19 - 29492121 GGTTCTCTTTG-----ATAGTTTG i oryLat2.chr7 C 0 C 0 s gadMor1.HE571807 12696 19 - 23136 GTTATACTGTT-----ATAGCAGA i gadMor1.HE571807 C 0 C 0 s danRer7.chr11 44511287 24 + 46661319 AAACACTTGGAAAACCATAGCTAT i danRer7.chr11 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e petMar1.Contig22037 5612 25 + 10185 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-80738.000000 s mm10.chrUn_GL456394 22530 24 + 24323 G---TGGAGC------------ACTGTT------------ATATGACAGTG--- s monDom5.chr5 46750874 23 + 304825324 T---TATAAA------------TAAGTT------------ACATTGTGCC---- i monDom5.chr5 C 0 C 0 s melGal1.chrUn_GL427593 1782 13 - 2027 A-----------------------TGGG------------ACATGGCA------ i melGal1.chrUn_GL427593 C 0 C 0 s galGal4.chr2 96305261 24 + 148809762 ATACTGGGGC------------TTTGTG------------ACATCGCA------ i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10476054 20 - 175225315 G----AAGGT------------GTTGTA------------ACATCACA------ i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891623 22 + 2272089 a----acagcca----------atcagc------------ataTGGCA------ i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479432 21 + 535221 T---AGTGAC------------ACAGTG------------ACAGCACA------ i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876329 15 - 4223152 G---------------------TATGGC------------GCATTGTA------ i latCha1.JH126584 C 0 C 0 s fr3.HE591884 77858 21 + 143622 t---ggcggt------------aaggta------------gcgtggca------ i fr3.HE591884 C 0 I 4 s gasAcu1.chrXVII 12308893 21 + 14603141 T---CACTGC------------TCTGTA------------TCATTGTA------ i gasAcu1.chrXVII C 0 I 20 s oryLat2.chr7 4747023 21 - 29492121 A---TGGTTC------------TCTGTG------------ATAGTCTA------ i oryLat2.chr7 C 0 I 20 s gadMor1.HE571807 12715 22 - 23136 C---TGTTAT------------ACAGTC-----------TACCTTACA------ i gadMor1.HE571807 C 0 n 0 s danRer7.chr11 44511311 33 + 46661319 T---AGCTAC------------CCATTAAAAACACTTGGAACACCACA------ i danRer7.chr11 C 0 I 11 s petMar1.Contig22037 5637 28 + 10185 -----------GTTAAACAATGAATGTT------------TCAGCACA---GTG i petMar1.Contig22037 I 25 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-476044.000000 s mm10.chrUn_GL456394 22554 174 + 24323 GAGGAGGTGACACCAAAGTGGAGCACAGTGACA----------------TCACAAT--GGAGCAGT-------CTAAAATCACTCTGGAGC----------ACTGTGACACCACTTTGGAGCA----ATGTG-A-------CAGCACAGAGGAT------AACTGA------G----ACAACA--A------------AGTGGAAC----ATTGT----TATACCACAG------TGG---AGAACTGTG----ACACGACA---------GTGTAGCACT s monDom5.chr5 46750897 188 + 304825324 -AAGTAGCCATAACCAACTGTAATACTGTGCCAACTAGTTATAAATAAGTTACACT--GTGCCAAGG----AGCCATAACCAA-CTGTAAT----------ACTGTGCCAACTAACTACAACA----CTGTG-C-------CA--ACTAGTTAT------AAATAA------G----TTA-CA--C------------TGTGCCAA----GTAGC----CATAACCAAC------TGT---AACACTGTG----CCAACTAA---------CTACAACACT i monDom5.chr5 C 0 C 0 s melGal1.chrUn_GL427593 1795 165 - 2027 -AAGCAA-------------CGGCACCGTCACA----------------GCACAAT--GGCACAGC-------GATGGCACAA--AGCGTG----------GCAATGCCATCACA-----GCA----CCGTG-A-------CACCACAA-AGGG------ACGTGGCACAACG----ATGGCA--TT---------GCAAACCGGC----ACCGT----CAGGGCACGACGACACCGT---GGCACGACG----ACGTCA-----------CCGCGGTGCA i melGal1.chrUn_GL427593 C 0 C 0 s galGal4.chr2 96305285 165 + 148809762 -AAGGA----------------GCATTTTGATT----------------TCATAATAGGGCTCAGT-------GACATCACAG--TGGGAC----------TCTGGGACATCACAATGGGGCA----CTCTG-A-------CGCCACAATGGGG------AAATGA------G----ATGTCA--T------------AATACGAC----TCTAT----TATATCACAA------TTT---AGCTCTACG----GCATCACAT-TTGATCTCTGTGATGTC i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10476074 155 - 175225315 -GGGTG----------------GGTCTGTGAGC----------------CCACAGA--GGTGCAGT-------GTGAAATAAG--TGAGA-------------TCTGCCatcaca---gagca--ggctgtg-a-------catcaTAG-AGGA------GGTTGT------G----ATGTCA--C-----------AAAGTCGA------CTGT----GACATTACAG------Gct---ggctgtgtg----acatcacagaatgg---CTGTGAGGCC i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891645 172 + 2272089 -GAGAAAGTCCAAC------CAAAACTGTGGGC-------------------------AGTTCTCT-------GGCTGTCCAA--AGGTC-------------CTTGTTTTGGCT-----GCT----TTTGT-T-------CCTCCCAGCTGGAGTCTCTGGTTGGTTTAATA----GTTTCA--ctgagtttaaggctagaagag----accat----tagatcatc-------tct---AGTCTGA--------ATCACAAGC------CAGAGATTTC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479453 165 + 535221 -GGGTT--------------CTAGGGTGCCAGC----------------CCATAGT--GACACAGT-------GACAGCACAG--GGTTCT----------AGGGTGCCAGCCCATGGTGACA----CAGTG-A-------CAGCACAG---GG------TTCTAG------G----GTGCCA--G---------CCCATAGTGAC----ACAGT----GACAGCACAG------GGT---TCTAGGGTG----CCAGCCCATAGTGACA-CAGTGACAGC i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876344 140 - 4223152 -ATGCA----------------GCATAGT--------------------GCACAAC--AGAGTAGT----------------A--TGGTG------------------CATCGTAATGCAGCA----TGGTGCA-------CAGTAAAG-CACA------GAACAG------T----ATGGCA--C------------AGAGTAAA----ACAATGCGGCACACTGTAG------AAT---AGTATGGTG---TACAGTAGAA--------CAGTATTGTA i latCha1.JH126584 C 0 C 0 s fr3.HE591884 77883 162 + 143622 ------------------ggtagcgtggcagtg----------------aggcagc--gtggcagcgcgtggcggtaaggtag--cgtggc----------agtgaggca--gcgtggcagta----aggta-g-------cgtggcagtgtgg------cagcgc------g----gcagcg--c------------atggcggt----aaggt----agcgtggcag------taaggtagcgtggca----gtaaggca---------gtgtggcagc i fr3.HE591884 I 4 C 0 s gasAcu1.chrXVII 12308934 161 + 14603141 ------------------TGTATCACTGTATTA----------------ATACACT--GTATCACTGCTCTGTATCACTGTAT--TAATAC----------TTTGTATCACTTCTCTGCATCA----CTGTA-T-------TAATACACTGTAT------CACTGC------A----TTAATA--C------------ACTGTATC----ACTGT----ATTAATACAC------TGA---ATCACTGTA----TTAATACA---------CTGTATCACT i gasAcu1.chrXVII I 20 n 20 s oryLat2.chr7 4747064 156 - 29492121 ------------------GATGGTTCTCTCT-------------------GATAGT--TTAATGGTTCCCTCTGATAGTTTGA--TGGTTC----------CCTCTGATAGTTCCCTCTGATA----GTCCG-A-------TGGTTCTCTGTGA------TAGTCT------A----ATGGTT--C------------CCTCTGAC----ATTTA----GATGGTTCTC------TCT---GATAGTCTA----ATGGTTCC---------CTCTGATA-- i oryLat2.chr7 I 20 C 0 s danRer7.chr11 44511355 169 + 46661319 --------------------AAACAC----TTG----------------GAACAGC--AAAGCAAACACTTGGAAAACCATGA--CAGCACATTAAAAACACTTGGAACA--CCATGACAGCA----CATTA-AAAACACTTGGAACACCATGA------CAGCAC------A----TCAAAAACA------------CTTGGAAC----ACCAT----GACAGCACAT------TAAA--AACGCT--------TGGAAca---------ccatgacagc i danRer7.chr11 I 11 I 3 s petMar1.Contig22037 5665 182 + 10185 ----------------AAACAATGAATGTTTCA----------------GCACAGT--GAAAAAAT-GAATGTTTCAGCACAG--TGAAAA------AATGAATGTTTCAGCACAGTGAAACAATGAATGTT-T-------CAGCACAGTGAAA------CAATGA------ATGTTTCAGCA--C------------AGTGAAACAATGAATGT----TTCAGCACAG------TGA---AACAATGAATGTTTCAGCACA---------GTGAAACAAT i petMar1.Contig22037 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE571807 12737 0 - 23136 I e ornAna1.Contig28798 9761 0 + 11539 I a score=1619.000000 s mm10.chrUn_GL456394 22728 2 + 24323 AT s monDom5.chr5 46751085 2 + 304825324 GT i monDom5.chr5 C 0 I 43 s melGal1.chrUn_GL427593 1960 2 - 2027 AC i melGal1.chrUn_GL427593 C 0 I 4 s galGal4.chr2 96305450 2 + 148809762 AT i galGal4.chr2 C 0 I 4 s taeGut1.chrUn 10476229 2 - 175225315 AC i taeGut1.chrUn C 0 I 20 s chrPic1.JH584847 891817 2 + 2272089 AC i chrPic1.JH584847 C 0 I 14 s xenTro3.GL173343 479618 2 + 535221 AC i xenTro3.GL173343 C 0 I 14 s danRer7.chr11 44511527 1 + 46661319 -t i danRer7.chr11 I 3 I 1 e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE571807 12737 0 - 23136 I e petMar1.Contig22037 5847 0 + 10185 C e latCha1.JH126584 1876484 0 - 4223152 C e fr3.HE591884 78045 0 + 143622 C e gasAcu1.chrXVII 12309095 20 + 14603141 I e oryLat2.chr7 4747220 0 - 29492121 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-81166.000000 s mm10.chrUn_GL456394 22730 40 + 24323 T-----AAGCTCTGTGGAGCATTT--------------------TGACAGCACAGTCGAGAAATG s melGal1.chrUn_GL427593 1966 16 - 2027 ------GCACAAGA------------------------------TGCAATC-------------G i melGal1.chrUn_GL427593 I 4 C 0 s galGal4.chr2 96305456 17 + 148809762 ------GGGCTCTG------------------------------CGTCGTC------------TG i galGal4.chr2 I 4 C 0 s taeGut1.chrUn 10476251 35 - 175225315 AGATAAGggctctg------------------------------tgacatcacagagcagctgtg i taeGut1.chrUn I 20 C 0 s chrPic1.JH584847 891833 35 + 2272089 ATT---AAGCTCAA----ATATTTTA----------------GTTAACATCACagc-------ta i chrPic1.JH584847 I 14 C 0 s xenTro3.GL173343 479634 40 + 535221 ----CCAGGCCAGG-GTTACACAG--------------------TGACAGCACAGGGTTCTAGGG i xenTro3.GL173343 I 14 C 0 s latCha1.JH126584 1876484 15 - 4223152 --------------------------------------------------CACAGTAGAGTAATA i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78045 18 + 143622 ------------------------------------------cgtggcgg-----taaggtagcg i fr3.HE591884 C 0 C 0 s oryLat2.chr7 4747220 24 - 29492121 -----------------------------------------GTTTGATGGTTCCCTCTGATAGTT i oryLat2.chr7 C 0 C 0 s danRer7.chr11 44511529 40 + 46661319 -------------------------aaaaacacttggaacaccatgacagcacattaaaaacgct i danRer7.chr11 I 1 C 0 s petMar1.Contig22037 5847 26 + 10185 ---------------------------------------GAATGTTTCAGCACAGTGAAAAAATG i petMar1.Contig22037 C 0 n 0 e monDom5.chr5 46751087 43 + 304825324 I e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE571807 12737 0 - 23136 I e gasAcu1.chrXVII 12309095 20 + 14603141 I e ornAna1.Contig28798 9761 0 + 11539 I a score=4976.000000 s mm10.chrUn_GL456394 22770 4 + 24323 -----TGAC s melGal1.chrUn_GL427593 1982 4 - 2027 -----TGGC i melGal1.chrUn_GL427593 C 0 C 0 s galGal4.chr2 96305473 4 + 148809762 -----TGGC i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10476286 4 - 175225315 -----tgat i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891868 4 + 2272089 -----aagc i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479674 4 + 535221 -----TGCC i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876499 4 - 4223152 -----TGGC i latCha1.JH126584 C 0 I 2 s fr3.HE591884 78063 4 + 143622 -----tggc i fr3.HE591884 C 0 C 0 s oryLat2.chr7 4747244 9 - 29492121 CCCTCTGAT i oryLat2.chr7 C 0 C 0 s danRer7.chr11 44511569 4 + 46661319 -----tgga i danRer7.chr11 C 0 C 0 e monDom5.chr5 46751087 43 + 304825324 I e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE571807 12737 0 - 23136 I e petMar1.Contig22037 5873 0 + 10185 I e gasAcu1.chrXVII 12309095 20 + 14603141 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-4675.000000 s mm10.chrUn_GL456394 22774 5 + 24323 ACCAC s monDom5.chr5 46751130 5 + 304825324 ACCAA i monDom5.chr5 I 43 C 0 s melGal1.chrUn_GL427593 1986 5 - 2027 ACGAC i melGal1.chrUn_GL427593 C 0 n 0 s galGal4.chr2 96305477 5 + 148809762 GTTGC i galGal4.chr2 C 0 I 1 s taeGut1.chrUn 10476290 5 - 175225315 ATCAC i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891872 5 + 2272089 atttc i chrPic1.JH584847 C 0 I 5 s xenTro3.GL173343 479678 5 + 535221 AGCCC i xenTro3.GL173343 C 0 I 1 s latCha1.JH126584 1876505 3 - 4223152 ACT-- i latCha1.JH126584 I 2 C 0 s fr3.HE591884 78067 5 + 143622 agtaa i fr3.HE591884 C 0 C 0 s oryLat2.chr7 4747253 5 - 29492121 AGTCC i oryLat2.chr7 C 0 C 0 s danRer7.chr11 44511573 5 + 46661319 acacc i danRer7.chr11 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE571807 12737 0 - 23136 I e petMar1.Contig22037 5873 0 + 10185 I e gasAcu1.chrXVII 12309095 20 + 14603141 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-410.000000 s mm10.chrUn_GL456394 22779 1 + 24323 T s monDom5.chr5 46751135 1 + 304825324 C i monDom5.chr5 C 0 C 0 s taeGut1.chrUn 10476295 1 - 175225315 A i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891882 1 + 2272089 t i chrPic1.JH584847 I 5 C 0 s xenTro3.GL173343 479684 1 + 535221 T i xenTro3.GL173343 I 1 C 0 s latCha1.JH126584 1876508 1 - 4223152 C i latCha1.JH126584 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr11 44511578 0 + 46661319 C e melGal1.chrUn_GL427593 1991 0 - 2027 I e gadMor1.HE571807 12737 0 - 23136 I e petMar1.Contig22037 5873 0 + 10185 I e fr3.HE591884 78072 0 + 143622 C e gasAcu1.chrXVII 12309095 20 + 14603141 I e galGal4.chr2 96305482 1 + 148809762 I e oryLat2.chr7 4747258 0 - 29492121 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-14770.000000 s mm10.chrUn_GL456394 22780 10 + 24323 TGGAGCACTG-- s monDom5.chr5 46751136 10 + 304825324 TGTAACACTG-- i monDom5.chr5 C 0 C 0 s galGal4.chr2 96305483 8 + 148809762 -ATGCGGCT--- i galGal4.chr2 I 1 C 0 s taeGut1.chrUn 10476296 10 - 175225315 GAGAAGGCTG-- i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891883 10 + 2272089 taGGAGACTG-- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479685 10 + 535221 AGTGACACAG-- i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876509 10 - 4223152 TAGAGCAATA-- i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78072 1 + 143622 ---------g-- i fr3.HE591884 C 0 I 32 s oryLat2.chr7 4747258 1 - 29492121 ---------G-- i oryLat2.chr7 C 0 I 11 s danRer7.chr11 44511578 1 + 46661319 ---------a-- i danRer7.chr11 C 0 C 0 s petMar1.Contig73717 4435 10 + 5062 --GGACGCtcta i petMar1.Contig73717 I 38 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chrUn_GL427593 1991 0 - 2027 I e gadMor1.HE571807 12737 0 - 23136 I e gasAcu1.chrXVII 12309095 20 + 14603141 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-14850.000000 s mm10.chrUn_GL456394 22790 9 + 24323 -TGACA-ACTA s monDom5.chr5 46751146 9 + 304825324 -TGCCA-ACTA i monDom5.chr5 C 0 C 0 s galGal4.chr2 96305491 5 + 148809762 ----CT-GTG- i galGal4.chr2 C 0 I 6 s taeGut1.chrUn 10476306 8 - 175225315 -AGACA-ATA- i taeGut1.chrUn C 0 I 3 s chrPic1.JH584847 891893 8 + 2272089 -AACTG-TTA- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479695 8 + 535221 -GGACA-GCA- i xenTro3.GL173343 C 0 I 1 s latCha1.JH126584 1876519 9 - 4223152 -TGGCACACA- i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78105 8 + 143622 -tggca-gtg- i fr3.HE591884 I 32 I 6 s gasAcu1.chrVI 1393016 8 - 17083675 -TGACA-GAG- i gasAcu1.chrVI T 786 I 2 s oryLat2.chr7 4747270 8 - 29492121 -TGATA-GTC- i oryLat2.chr7 I 11 I 2 s danRer7.chr11 44511579 8 + 46661319 -tgaca-gca- i danRer7.chr11 C 0 I 10 s petMar1.Contig73717 4445 9 + 5062 tcacca-ctg- i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chrUn_GL427593 1991 0 - 2027 I e gadMor1.HE571807 12737 0 - 23136 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-233369.000000 s mm10.chrUn_GL456394 22799 102 + 24323 AGTGGAACATTGC------Gac-actacagt---gga-gtac--------tg-----tga-cagcacagtggag-cactctgac------agcacagtgga----gcacagtcac--------agcacagtgga---gcactgt--gacaa s monDom5.chr5 46751155 78 + 304825324 ATTGGAACACTGT------GCCAACTA------------------------G-----TTA-TAAATAAGTT--------------------ACATTGTGCC----AAGTAGCCAT--------AACCAACTGTA---ATACTGT--GCCAA i monDom5.chr5 C 0 C 0 s melGal1.chr8 3498712 101 + 38656188 AGTGGGATTCTGT------GAC-GTCACAAT---GGG-GCTC--------TG-----TGATTGTCACAGTAGGG-CTCTGTGAC------GTTACAATGGG----GCTC--TGAT--------GTCACAGTGTG---GCTCTGT--GACGT i melGal1.chr8 I 58 C 0 s galGal4.chr2 96305502 105 + 148809762 AATGACGCTCTGT------GGC-ATCACAGTATGGGG-GCCA--------TG-----TGA-TGTCACAGCGGGT-CTTTTTGAT------GCCATAATGGT----GCTTTGTGAC--------GTCACAATGGA---GCTCTGT--AATGT i galGal4.chr2 I 6 C 0 s taeGut1.chrUn 10476317 96 - 175225315 AGTGGg---ttgt------gac-atcacagaa--ctg-actg--------tg-----aaa-tcacagagcagg----ctgggac------CCCAAAGAGCA----GACT-GAGAC--------ATTACAGGGCA---GCTGTAT--GAAAT i taeGut1.chrUn I 3 C 0 s chrPic1.JH584847 891901 109 + 2272089 ----------TGTTCTACAGGC-ATGGCCCTGGCTGG-GCCCCATTTTATTA-----TAG-CATCACAGGGAGG-TGAAATGAC------ACCACAAAGGA----GCACAATGAC--------ATCACCACACA---GAATGAT--GACAT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479704 102 + 535221 ---AGGGTTCTAG------GGT-GCCAGCCCATAGTG-ACAC--------AG-----TGG-CAGCACAGGGTTC-TAGGGTGCC------AGGACAGGGTT----ACACAGTGAC--------AGCACAGGGTT---CTAGGGT--GCCAG i xenTro3.GL173343 I 1 C 0 s latCha1.JH126584 1876528 84 - 4223152 AGTAGAACAATAC------GGC-AT-ATTCT---GGA-GCAA--------TA-----CGG-TGCACAAGTAGAG-CAATATGAC------AT------------------GCTCC--------AGAGCAGTATG---GCGCTCT--GT--- i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78119 108 + 143622 cgaggcagcgcgt------ggc-agt--------aag-gtag--------cg-----tgg-cag--tgag---g-cagcgtggcag----cgagtggcggtaa-ggtagcgtggcagtgaggcagcgtggcggtaaggtagcgt--ggcag i fr3.HE591884 I 6 I 11 s gasAcu1.chrVI 1393026 99 - 17083675 -GAGATGCACTGT------GAC-AGG--------AGGTGCAC--------TG-----TGA-CAG--AGGAGGTG-CACTGTGAC------CGAGAGGAGGT----GCACTGTGAC----CGACAGAGAGTAGGT---GCACTGT--GACTG i gasAcu1.chrVI I 2 I 9 s oryLat2.chr7 4747280 103 - 29492121 -ATGGTTCCCTCT------GAT-AGT--------TTG-ATGG--------TTATCTCTGA-TAGTCTGATGGTT-CCCTCTGAT------AGTTTGATGGT----TCTCTCTGAT--------AGTCTAATGGT---TCCCTCTCAGATAG i oryLat2.chr7 I 2 I 9 s danRer7.chr11 44511597 115 + 46661319 cttggaaaactat------aga-tgc--------ata-ttaa--------aaacacttgg-aacaccacagaag-cacattaaaaacacttggaagacgatagcagcacattaaa-----aacacttgcttgga---acaccat--aacag i danRer7.chr11 I 10 C 0 s petMar1.Contig73717 4454 102 + 5062 -gggggacGCTCT------ATC-ACTGCTGT---GGG-ACGC--------tc-----tat-caccactggggggacgctctatc------accactggggg----acGCTCTATC--------ACTACTGTAGG---ACGCTCT--ATCAC i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE571807 12737 0 - 23136 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-15349.000000 s mm10.chrUn_GL456394 22901 15 + 24323 caaagtggaacattt s monDom5.chr5 46751233 15 + 304825324 CTAACTACAACACTG i monDom5.chr5 C 0 C 0 s melGal1.chr8 3498813 15 + 38656188 CATAATAAGGCTCTG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96305607 15 + 148809762 CACAATGGAGCATTC i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10476413 15 - 175225315 CACAGGTGGCTTGTT i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 892010 15 + 2272089 CACATTCCACTGAGA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479806 15 + 535221 CCCATAGTGACACAG i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 78238 15 + 143622 ggcagtgaggcagcg i fr3.HE591884 I 11 C 0 s gasAcu1.chrVI 1393134 14 - 17083675 -GCATTGTGACAGAG i gasAcu1.chrVI I 9 C 0 s oryLat2.chr7 4747392 14 - 29492121 -TCTCTCAGATAGTC i oryLat2.chr7 I 9 C 0 s gadMor1.HE566360 344000 13 - 363564 GTCACCTCGACAG-- i gadMor1.HE566360 n 0 C 0 s danRer7.chr11 44511712 15 + 46661319 cacactaaaacactt i danRer7.chr11 C 0 C 0 s petMar1.Contig73717 4556 15 + 5062 TACTGTGGGACGCtc i petMar1.Contig73717 C 0 I 14 e tetNig2.chr21_random 2794303 867 - 3311323 I e latCha1.JH126584 1876612 0 - 4223152 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-25833.000000 s mm10.chrUn_GL456394 22916 9 + 24323 ---tgacaccac s monDom5.chr5 46751248 9 + 304825324 ---TGCCAACTA i monDom5.chr5 C 0 C 0 s melGal1.chr8 3498828 9 + 38656188 ---TGACATCAT i melGal1.chr8 C 0 T 183 s galGal4.chr2 96305622 9 + 148809762 ---TGATGCCAC i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10476428 8 - 175225315 ---AACTCTCA- i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 892025 9 + 2272089 ---GGACATCAC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 479821 9 + 535221 ---GGACAGAAC i xenTro3.GL173343 C 0 C 0 s fr3.HE591884 78253 1 + 143622 ---t-------- i fr3.HE591884 C 0 C 0 s gasAcu1.chrVI 1393148 1 - 17083675 ---A-------- i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4747406 1 - 29492121 ---T-------- i oryLat2.chr7 C 0 C 0 s danRer7.chr11 44511727 1 + 46661319 ---g-------- i danRer7.chr11 C 0 C 0 s petMar1.Contig1556 48605 9 + 56846 TGGAGACAC--- i petMar1.Contig1556 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e gadMor1.HE566360 344013 0 - 363564 C e latCha1.JH126584 1876612 0 - 4223152 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-3580.000000 s mm10.chrUn_GL456394 22925 1 + 24323 -a s monDom5.chr5 46751257 1 + 304825324 -G i monDom5.chr5 C 0 C 0 s galGal4.chr2 96305631 1 + 148809762 -A i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10476436 1 - 175225315 -G i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 892034 1 + 2272089 -A i chrPic1.JH584847 C 0 T 669 s xenTro3.GL173343 479830 1 + 535221 -A i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876612 1 - 4223152 -A i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78254 1 + 143622 -g i fr3.HE591884 C 0 C 0 s gasAcu1.chrVI 1393149 1 - 17083675 -G i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4747407 1 - 29492121 -G i oryLat2.chr7 C 0 C 0 s danRer7.chr11 44511728 1 + 46661319 -g i danRer7.chr11 C 0 C 0 s petMar1.Contig1556 48614 1 + 56846 T- i petMar1.Contig1556 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498837 183 + 38656188 T e gadMor1.HE566360 344013 0 - 363564 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-94.000000 s mm10.chrUn_GL456394 22926 4 + 24323 gtag s monDom5.chr5 46751258 4 + 304825324 TTAT i monDom5.chr5 C 0 C 0 s petMar1.Contig1556 48615 4 + 56846 GTGA i petMar1.Contig1556 C 0 I 7 e tetNig2.chr21_random 2794303 867 - 3311323 I e danRer7.chr11 44511729 0 + 46661319 C e melGal1.chr8 3498837 183 + 38656188 T e gadMor1.HE566360 344013 0 - 363564 C e taeGut1.chrUn 10476437 0 - 175225315 C e latCha1.JH126584 1876613 0 - 4223152 C e fr3.HE591884 78255 0 + 143622 C e gasAcu1.chrVI 1393150 0 - 17083675 C e xenTro3.GL173343 479831 0 + 535221 C e galGal4.chr2 96305632 0 + 148809762 C e oryLat2.chr7 4747408 0 - 29492121 C e chrPic1.JH584847 892035 669 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-152861.000000 s mm10.chrUn_GL456394 22930 65 + 24323 agcacagtgtcagcact----gtggagcactgtGACAACAAAGTGGTACACT-----------------------GTGA---AACATAAGT----AGAG- s monDom5.chr5 46751262 66 + 304825324 AAATAAGTT---ACACT----GTGCCAAGTAGCCATAACCAACTGTAACAAT-----------------------GTGC---CAACTAACTGTTAAGAG- i monDom5.chr5 C 0 C 0 s galGal4.chr2 96305632 51 + 148809762 ---------------------ATGGGGATCTGTGATTTCACAATGTGGCTCT-----------------------ATGACATCACATTAGG----TGAG- i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 10476437 49 - 175225315 ---------------------Agtgggctgtgtgacatcaca--ggagcTGT-----------------------GTGATAACACAGAGGC----TGTG- i taeGut1.chrUn C 0 n 0 s chrPic1.JH584847 891366 51 + 2272089 ---------------------ATAGATCAGACAGACACAGCACGGGGGAAGG-----------------------GGTATCCTACACAGGC----AGAG- i chrPic1.JH584847 T 669 I 4 s xenTro3.GL173343 479831 51 + 535221 ---------------------GGGTTCTAGTGTGCCAGCCCATAGTGACACA-----------------------GTGGCAGCACAGGGTT----CTAG- i xenTro3.GL173343 C 0 I 18 s latCha1.JH126584 1876613 53 - 4223152 ----------GAACAGT----ACAGTGTACAGT-AGAGCACAGTACAACAGT-----------------------ATGG---CACACTG-T----AGAG- i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78255 56 + 143622 ---------------------gcagcgcgtggcggtaaggtagcgtggcagtaa----ggtagc-----------gtgg---cagtgaggc----agcg- i fr3.HE591884 C 0 I 26 s gasAcu1.chrVI 1393150 48 - 17083675 ---------------------GAGGTGCATTGTGACAGAGAGGAGATGCACT-----------------------GTGA---CAATGAGGA----GGTG- i gasAcu1.chrVI C 0 I 21 s oryLat2.chr7 4747408 67 - 29492121 ---------------------ATTGTTCCCTCTGATAGTTTGATGGTTCTCTCA----GATAGTCtNNNNNNNNNNtGA---TAGTCTAAT----GGTT- i oryLat2.chr7 C 0 I 21 s gadMor1.HE566360 344013 61 - 363564 ----------------------CAGTCACCGGCGAGCGGGCGCTGTTGTTCTGAACCCGGTGATAC---------ATAA---CACAACGCT----GGCT- i gadMor1.HE566360 C 0 I 10 s danRer7.chr11 44511729 54 + 46661319 ---------------------acggc-catagcaacacataaaaaaaacttaga-------agacc---------atag---caaacactt----ggaa- i danRer7.chr11 C 0 I 31 s petMar1.Contig73717 4585 67 + 5062 ---gacGCTCTATCACTACTGGGGGGACGCTCTATCACTACTGTGAGACGCt-----------------------ctat---caccactgg----gggga i petMar1.Contig73717 I 14 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498837 183 + 38656188 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-14027.000000 s mm10.chrUn_GL456394 22995 5 + 24323 CACTG--- s monDom5.chr5 46751328 5 + 304825324 CCTTG--- i monDom5.chr5 C 0 N 0 s galGal4.chr2 96305683 3 + 148809762 CTC----- i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 891421 3 + 2272089 cta----- i chrPic1.JH584847 I 4 C 0 s xenTro3.GL173343 479900 2 + 535221 ---CA--- i xenTro3.GL173343 I 18 I 18 s latCha1.JH126584 1876666 2 - 4223152 ---CA--- i latCha1.JH126584 C 0 I 3 s fr3.HE591884 78337 2 + 143622 ---tg--- i fr3.HE591884 I 26 I 3 s gasAcu1.chrVI 1393219 2 - 17083675 ---CA--- i gasAcu1.chrVI I 21 I 3 s oryLat2.chr7 4747496 2 - 29492121 ---CT--- i oryLat2.chr7 I 21 I 3 s danRer7.chr11 44511814 2 + 46661319 ---ca--- i danRer7.chr11 I 31 I 3 s petMar1.Contig73717 4652 5 + 5062 ---cgctc i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498837 183 + 38656188 T e gadMor1.HE566360 344074 10 - 363564 I e taeGut1.chrUn 10476486 0 - 175225315 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-8528.000000 s mm10.chrUn_GL456394 23000 11 + 24323 TGTCATC-A--CAG s galGal4.chr2 96305686 11 + 148809762 TGTGATG-T--CAC i galGal4.chr2 C 0 I 2 s chrPic1.JH584847 891424 11 + 2272089 tgtgatg-g--cag i chrPic1.JH584847 C 0 T 342 s xenTro3.GL173343 479920 11 + 535221 TATTATT-G--CAC i xenTro3.GL173343 I 18 I 1 s latCha1.JH126584 1876671 10 - 4223152 --TGGTGTA--CAG i latCha1.JH126584 I 3 C 0 s fr3.HE591884 78342 9 + 143622 --gcgcg-g--cag i fr3.HE591884 I 3 I 8 s gasAcu1.chrVI 1393224 9 - 17083675 --TTTCA-G--AAG i gasAcu1.chrVI I 3 I 8 s oryLat2.chr7 4747501 11 - 29492121 --TGATG-GTCTAA i oryLat2.chr7 I 3 I 8 s gadMor1.HE566360 344084 6 - 363564 -----CA-A--CAC i gadMor1.HE566360 I 10 I 8 s danRer7.chr11 44511819 9 + 46661319 --tgaca-g--cac i danRer7.chr11 I 3 I 19 s petMar1.Contig73717 4657 11 + 5062 tatcacc-a--ctg i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498837 183 + 38656188 T e taeGut1.chrUn 10476486 0 - 175225315 I e ornAna1.Contig28798 9761 0 + 11539 I a score=575.000000 s mm10.chrUn_GL456394 23011 5 + 24323 T----GTGA s galGal4.chr2 96305699 5 + 148809762 T----CTAA i galGal4.chr2 I 2 I 817 s xenTro3.GL173343 479932 5 + 535221 T----GTCA i xenTro3.GL173343 I 1 I 2 s latCha1.JH126584 1876681 5 - 4223152 T----ATGA i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78359 9 + 143622 taagcgtgg i fr3.HE591884 I 8 C 0 s gasAcu1.chrVI 1393241 5 - 17083675 T----GTGA i gasAcu1.chrVI I 8 C 0 s oryLat2.chr7 4747520 5 - 29492121 T----CTGA i oryLat2.chr7 I 8 C 0 s gadMor1.HE566360 344098 5 - 363564 A----GCGA i gadMor1.HE566360 I 8 C 0 s danRer7.chr11 44511847 5 + 46661319 c----ataa i danRer7.chr11 I 19 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498837 183 + 38656188 T e taeGut1.chrUn 10476486 0 - 175225315 I e petMar1.Contig73717 4668 0 + 5062 C e chrPic1.JH584847 891435 342 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-21744.000000 s mm10.chrUn_GL456394 23016 21 + 24323 CAGTATAGAGGAGCATTCTGA s galGal4.chr2 96306521 11 + 148809762 CTGTGGTG----------TAA i galGal4.chr2 I 817 C 0 s xenTro3.GL173343 479939 11 + 535221 AAGTAAAA----------TAA i xenTro3.GL173343 I 2 I 7 s latCha1.JH126584 1876686 16 - 4223152 CAGTATGT-----CATATTGA i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78368 21 + 143622 ctgtggcgcgtggcagcgcgg i fr3.HE591884 C 0 C 0 s gasAcu1.chrVI 1393246 21 - 17083675 CCGAGACGAGGTGCCCTGTGT i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4747525 21 - 29492121 CATTTAGATGGTTCTCTCTGA i oryLat2.chr7 C 0 C 0 s gadMor1.HE566360 344103 21 - 363564 CACAACGCTGGATCAGAGCGA i gadMor1.HE566360 C 0 C 0 s danRer7.chr11 44511852 21 + 46661319 caaacacttggaacaccatag i danRer7.chr11 C 0 C 0 s petMar1.Contig73717 4668 15 + 5062 ------ggggggacgctctat i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e melGal1.chr8 3498837 183 + 38656188 T e taeGut1.chrUn 10476486 0 - 175225315 I e chrPic1.JH584847 891435 342 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-28885.000000 s mm10.chrUn_GL456394 23037 10 + 24323 ---CAATACAGTC- s melGal1.chr3 265271 4 - 100405168 --------CAGT-- i melGal1.chr3 T 786 C 0 s galGal4.chr2 96306532 9 + 148809762 ---CAATATGGT-- i galGal4.chr2 C 0 C 0 s xenTro3.GL173343 479957 7 + 535221 -----ATCCCCT-- i xenTro3.GL173343 I 7 I 7 s latCha1.JH126584 1876702 5 - 4223152 -----CTCTA---- i latCha1.JH126584 C 0 I 2 s fr3.HE591884 78389 9 + 143622 ---cagcgtggc-- i fr3.HE591884 C 0 I 1 s gasAcu1.chrVI 1393267 9 - 17083675 ---CCGTCAGAG-- i gasAcu1.chrVI C 0 I 1 s oryLat2.chr7 4747546 9 - 29492121 ---TAGTCTGAT-- i oryLat2.chr7 C 0 I 1 s gadMor1.HE566360 344124 9 - 363564 ---CACAACGCT-- i gadMor1.HE566360 C 0 I 1 s danRer7.chr11 44511873 9 + 46661319 ---cagcacacg-- i danRer7.chr11 C 0 I 1 s petMar1.Contig73717 4683 13 + 5062 caccactggggg-g i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e taeGut1.chrUn 10476486 0 - 175225315 I e chrPic1.JH584847 891435 342 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-70189.000000 s mm10.chrUn_GL456394 23047 29 + 24323 GACCCCGTGACAGCAG---TGTGGAGCACT-TA s melGal1.chr3 265275 28 - 100405168 ---ACAGGGACATCCCT-GACTCCATTCCT-TG i melGal1.chr3 C 0 I 4 s galGal4.chr2 96306541 27 + 148809762 ---TCTGTGGCATCAC---AATGGAGCCCTGTG i galGal4.chr2 C 0 I 4 s melUnd1.JH538460 745 30 + 1141 GACACAGTGACGTCAG---CAGGGGGTGCCATG i melUnd1.JH538460 N 0 I 1 s xenTro3.GL173343 479971 25 + 535221 GGCACAATAATCCCAG---AGAGAGTGA----- i xenTro3.GL173343 I 7 C 0 s latCha1.JH126584 1876709 16 - 4223152 AACTGGGAAACTTTAG----------------- i latCha1.JH126584 I 2 C 0 s fr3.HE591884 78399 1 + 143622 --------------------------------g i fr3.HE591884 I 1 I 1 s gasAcu1.chrVI 1393277 1 - 17083675 --------------------------------G i gasAcu1.chrVI I 1 I 1 s oryLat2.chr7 4747556 1 - 29492121 --------------------------------G i oryLat2.chr7 I 1 I 9 s gadMor1.HE566360 344134 1 - 363564 --------------------------------G i gadMor1.HE566360 I 1 I 9 s danRer7.chr11 44511883 1 + 46661319 --------------------------------a i danRer7.chr11 I 1 I 17 s petMar1.Contig73717 4696 32 + 5062 gACGCTCTATCACCATTGGGGGGATGCtctat- i petMar1.Contig73717 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e taeGut1.chrUn 10476486 0 - 175225315 I e chrPic1.JH584847 891435 342 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-41848.000000 s mm10.chrUn_GL456394 23076 28 + 24323 CACCACAAAGGAG--CACTGTGACAACAAT s melGal1.chr3 265307 14 - 100405168 ---------------CCCTGTCCCATAAA- i melGal1.chr3 I 4 C 0 s galGal4.chr2 96306572 25 + 148809762 C---ACAGTGGAG--CCCTGTGACATCAAT i galGal4.chr2 I 4 C 0 s taeGut1.chr18 1462532 29 - 11201131 CAGCACAAAGGAGCACATGGTGGCACAAA- i taeGut1.chr18 T 286 C 0 s melUnd1.JH538460 776 27 + 1141 CATCACCATGAGG---ACAGTGACGTCAgg i melUnd1.JH538460 I 1 C 0 s xenTro3.GL173343 479996 28 + 535221 --AACCAGACAAGTTCCTCGTTGTGCCAAT i xenTro3.GL173343 C 0 C 0 s latCha1.JH126584 1876725 14 - 4223152 ---------------CACTG-GACAGAAAT i latCha1.JH126584 C 0 C 0 s oryLat2.chr7 4747566 2 - 29492121 ----------------------------AT i oryLat2.chr7 I 9 C 0 s gadMor1.HE566360 344144 2 - 363564 ----------------------------AC i gadMor1.HE566360 I 9 C 0 s danRer7.chr11 44511901 8 + 46661319 ----------------------aagcaaac i danRer7.chr11 I 17 C 0 s petMar1.Contig73717 4728 28 + 5062 --caccactgggggacgctctatcaccact i petMar1.Contig73717 C 0 n 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e fr3.HE591884 78400 1 + 143622 I e gasAcu1.chrVI 1393278 1 - 17083675 I e chrPic1.JH584847 891435 342 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-120160.000000 s mm10.chrUn_GL456394 23104 48 + 24323 G-------------------TTGCACAATGGGATGTCACAGTGGATC------ACT----------GTGACAGCACATTTGTT s melGal1.chr3 265321 41 - 100405168 ------------------------GCAGCATGGGGACAC--GGGGAT------CCC----------CTTGTCCAACCCCAACT i melGal1.chr3 C 0 I 1 s galGal4.chr2 96306597 48 + 148809762 A-------------------TTGGGCTCTGTGACGTCACTATGGGGC------ACT----------CTGATGCCACAATAAGG i galGal4.chr2 C 0 T 941 s taeGut1.chr18 1462561 44 - 11201131 ----------------------GGGGCACATGGTGGCACAAAGGAGC------AC-----------ATGGTggcacaaagggg i taeGut1.chr18 C 0 C 0 s melUnd1.JH538460 803 47 + 1141 g-------------------gggggCATAGTGATGTCAGC-AGGGCC------GCC----------GTGACGTCAGCATGAGG i melUnd1.JH538460 C 0 I 1 s xenTro3.GL173343 480024 58 + 535221 T-------------------TGCTCCGGCAGAACCTCACCGTGATGC------ACTGAATGAGCCGCAGGTACCACATCCATT i xenTro3.GL173343 C 0 I 1 s latCha1.JH126584 1876739 54 - 4223152 T-------------------CTTGGTGGAATAATGTCAATGAGGGAACCAAAGACT----------TTGAACCCATATCCACG i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78401 41 + 143622 --------------------aag-gtagtgtggcgcgtgagcgcggc------agc----------gtggca----gtgag-g i fr3.HE591884 I 1 C 0 s gasAcu1.chrVI 1393279 47 - 17083675 --------------------AGGTGCACTGTGACTGAGAGGAGGTGC------ATT----------GTGACACACTGTAAGTT i gasAcu1.chrVI I 1 C 0 s oryLat2.chr7 4747568 67 - 29492121 AGTTTGATGGTTCCCTCTGATAGTTCCCTCTGATAGTCCGATGGTTC------TCT----------GTGATAGTCTAATGGTT i oryLat2.chr7 C 0 C 0 s gadMor1.HE566360 344146 54 - 363564 ACAACGC-------------TGGCTCAGAGCGACACAACACTGGCTC------AGA----------GCGACACAACACTGGCT i gadMor1.HE566360 C 0 C 0 s danRer7.chr11 44511909 67 + 46661319 acttggaaaaccatagctattagctacccattaaaaacacttggaac------acc----------acagcaacacacataaa i danRer7.chr11 C 0 C 0 s petMar1.Contig205 26557 53 + 83855 --------------GTCCCCCAGTGATCTGTCTCAGTCCCCCAGTGA------TCT----------GTGACAGTCCCCCAGTG i petMar1.Contig205 T 1469 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e chrPic1.JH584847 891435 342 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-3931.000000 s mm10.chrUn_GL456394 23152 8 + 24323 CAC-TGTGC s melGal1.chr3 265363 8 - 100405168 TGG-TGTCC i melGal1.chr3 I 1 C 0 s galGal4.chr2 96305704 8 + 148809762 CTC-TGTCG i galGal4.chr2 T 941 C 0 s taeGut1.chr18 1462605 7 - 11201131 -ca-catgg i taeGut1.chr18 C 0 C 0 s melUnd1.JH538460 851 8 + 1141 CAC-TGTGA i melUnd1.JH538460 I 1 C 0 s xenTro3.GL173343 480083 8 + 535221 ACC-TGCCC i xenTro3.GL173343 I 1 I 14 s latCha1.JH126584 1876793 8 - 4223152 AGC-TGCAA i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78442 8 + 143622 cag-cgtgg i fr3.HE591884 C 0 C 0 s gasAcu1.chrVI 1393326 8 - 17083675 CAC-TGTGA i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4747635 8 - 29492121 CCC-TCTGA i oryLat2.chr7 C 0 C 0 s gadMor1.HE566360 344200 8 - 363564 CAG-AGCGA i gadMor1.HE566360 C 0 C 0 s danRer7.chr11 44511976 9 + 46661319 cacttgcaa i danRer7.chr11 C 0 C 0 s petMar1.Contig205 26610 8 + 83855 ATC-TGTGA i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e chrPic1.JH584847 891435 342 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=4.000000 s mm10.chrUn_GL456394 23160 6 + 24323 CACAAC s melGal1.chr3 265371 6 - 100405168 CTCCCC i melGal1.chr3 C 0 C 0 s galGal4.chr2 96305712 6 + 148809762 CATAAC i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462612 6 - 11201131 cagcac i taeGut1.chr18 C 0 C 0 s melUnd1.JH538460 859 6 + 1141 CGTCAC i melUnd1.JH538460 C 0 C 0 s chrPic1.JH584847 891093 6 + 2272089 TATCAC i chrPic1.JH584847 T 342 C 0 s xenTro3.GL173343 480105 6 + 535221 CACAAC i xenTro3.GL173343 I 14 I 863 s latCha1.JH126584 1876801 6 - 4223152 CAAAAG i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78450 1 + 143622 -----c i fr3.HE591884 C 0 I 1 s gasAcu1.chrVI 1393334 1 - 17083675 -----C i gasAcu1.chrVI C 0 I 2 s oryLat2.chr7 4747643 1 - 29492121 -----C i oryLat2.chr7 C 0 I 1 s gadMor1.HE566360 344208 1 - 363564 -----C i gadMor1.HE566360 C 0 I 5 s danRer7.chr11 44511985 1 + 46661319 -----c i danRer7.chr11 C 0 I 1 s petMar1.Contig205 26618 6 + 83855 CAGTCC i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-34827.000000 s mm10.chrUn_GL456394 23166 5 + 24323 ---AGTAG s melGal1.chr3 265377 5 - 100405168 ---TATAG i melGal1.chr3 C 0 C 0 s galGal4.chr2 96305718 5 + 148809762 ---AATAG i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462618 5 - 11201131 ---aaagg i taeGut1.chr18 C 0 C 0 s melUnd1.JH538460 865 4 + 1141 ---CA-GG i melUnd1.JH538460 C 0 C 0 s chrPic1.JH584847 891099 5 + 2272089 ---AATCT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398843 5 + 427269 ---GGTGG i xenTro3.GL173416 C 0 C 0 s latCha1.JH126584 1876807 4 - 4223152 ----GGTG i latCha1.JH126584 C 0 C 0 s fr3.HE591884 78452 4 + 143622 ----gtga i fr3.HE591884 I 1 I 58 s gasAcu1.chrVI 1393337 4 - 17083675 ----AGGA i gasAcu1.chrVI I 2 I 2 s oryLat2.chr7 4747645 4 - 29492121 ----TTTA i oryLat2.chr7 I 1 I 45 s gadMor1.HE566360 344214 4 - 363564 ----ACTG i gadMor1.HE566360 I 5 I 35 s danRer7.chr11 44511987 4 + 46661319 ----gcaa i danRer7.chr11 I 1 I 51 s petMar1.Contig205 26624 5 + 83855 CCCAG--- i petMar1.Contig205 C 0 C 0 e tetNig2.chr21_random 2794303 867 - 3311323 I e ornAna1.Contig28798 9761 0 + 11539 I a score=-251730.000000 s mm10.chrUn_GL456394 23171 64 + 24323 AGCAC---TGTGA---CACCATAGTGGAGCACTGTGACAA--------TA---CAGAG-----GAGGACTGTGACACCAC-------------CGCAGA s melGal1.chr3 265382 57 - 100405168 AGCAA---TGTGGGGACATGGGGAGAGGGTTGTCCCCTTT--------CG-------G-----TAACCATGTGCCATAGA------------------- i melGal1.chr3 C 0 I 106 s galGal4.chr2 96305723 58 + 148809762 GGTTC---TGTGG---CATCACAATAGGGCACTCTGATGC--------CA---CAGTG-----GGGCTCTGAGACATCAA------------------- i galGal4.chr2 C 0 I 6 s taeGut1.chr18 1462623 58 - 11201131 ggcac----atgg---cagcacaaaggagcacatggcagc-------aca---gagag-----gcacatggcagcacaaa------------------- i taeGut1.chr18 C 0 I 3 s melUnd1.JH538460 869 65 + 1141 GGTAC---AGTGA---CATCAGCA-GGGGAACAGTGACGT--------CA--CCATGA-----GGACAATGTGACGTCACCATCGGG------------ i melUnd1.JH538460 C 0 C 0 s chrPic1.JH584847 891104 64 + 2272089 CACAC---AGTGA---AATCATAATATAGTGCTAGGACAT--------TG---CAAGG-----CAATGCAATGACATCAT-------AATGCT------ i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398848 39 + 427269 GGCCC---AATGA---TATTACTGTGGGGCCCAATGATAT--------TA---CTG------------------------------------------- i xenTro3.GL173416 C 0 C 0 s latCha1.JH126584 1876811 60 - 4223152 AGCaa---cataa----acaacaacaaaatgctgCCATAT--------AG---CAGGGAATATGACTCCAGGGACAGG--------------------- i latCha1.JH126584 C 0 I 6 s tetNig2.chr21_random 2795170 33 - 3311323 GGCCT----CCAC---TACCACAGCGGACTCCACTGCCAC----------------------------------------------------------- i tetNig2.chr21_random I 867 C 0 s fr3.HE591884 78514 26 + 143622 agcgt---ggcag---tgaggcagcg--------tggcag----------------------------------------------------------- i fr3.HE591884 I 58 C 0 s gasAcu1.chrVI 1393343 11 - 17083675 -----------------------------TGCACTGTGAC----------------------------------------------------------- i gasAcu1.chrVI I 2 C 0 s oryLat2.chr7 4747694 32 - 29492121 GGTTT-TCTGTGA---TAGTCTAATGGTTCCCTCTG--------------------------------------------------------------- i oryLat2.chr7 I 45 C 0 s gadMor1.HE566360 344253 24 - 363564 aacac---aacgc---tggctcagag--------cgac------------------------------------------------------------- i gadMor1.HE566360 I 35 C 0 s danRer7.chr11 44512042 44 + 46661319 agcaactcactaa---aaatacttggaacaccacagcaacacacaaa---------------------------------------------------- i danRer7.chr11 I 51 C 0 s petMar1.Contig205 26629 64 + 83855 TGGAC---TGTGA---TAGTCCCCCAGTGGTCTGTGACAG--------TCCCCCAGTGGACTGTCACAGTCCCCCAGT--------------------- i petMar1.Contig205 C 0 C 0 e ornAna1.Contig28798 9761 0 + 11539 I a score=-166280.000000 s mm10.chrUn_GL456394 23235 62 + 24323 GCAC----TTTGACAGCACACTGGAGCTCTCTTACACC---ACAGTGAAGCACTGT-GA-CAGCATAGTGG s melGal1.chr8 3498654 63 + 38656188 GCTC----TGTGACATCACAATGGGGCTCTGTGATGTC---ACAATGCAGCTCTGT-GATTGTCACAGTGG i melGal1.chr8 T 183 C 0 s galGal4.chr2 96305787 62 + 148809762 GCCC----TGTGATGTCACAGTGGCGCTCTGTGATGTT---ACTATGGGGCTCTGT-GA-TGTCATAGTGG i galGal4.chr2 I 6 I 8 s taeGut1.chr18 1462684 59 - 11201131 gcac-----atggcagcacaaaggggcac-ATGGTGGC---ACAAAGGAGCAC-AT-GG-CAGCACAAAGG i taeGut1.chr18 I 3 C 0 s melUnd1.JH538460 934 61 + 1141 ACGC----CGTGACGTCAGCA-GGGGCACTGTGACATC---AGCAGGGGGCGCCAT-GA-CGTCACCATGA i melUnd1.JH538460 C 0 C 0 s chrPic1.JH584847 891168 62 + 2272089 GCAC----TATGACATCAAAATACAGTGCTATGATATC---ACAATGTAACACAGT-CA-TGTTACAATGC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 398887 45 + 427269 ---------------------TGGGGCCCAATGATATT---ACTGTGGGGCCCAAT-GA-TATTACTGTGG i xenTro3.GL173416 C 0 C 0 s latCha1.JH126584 1876877 63 - 4223152 TCACT---TGTGAAGTGTATGGGAGACGCTGCCTCCCT---CACATAGGACTCCATAGA-CATCAGAGAG- i latCha1.JH126584 I 6 I 3 s tetNig2.chr21_random 2795203 36 - 3311323 ---------------------CACAGC----TGGCTTTA--TCACCACCACAGTG--GG-CTCCAC----- i tetNig2.chr21_random C 0 C 0 s fr3.HE591884 78540 43 + 143622 ---------------------taaggcagcgtggcagtaaggtagcgtggcagtga-gg-cagcgt----- i fr3.HE591884 C 0 C 0 s gasAcu1.chrVI 1393354 38 - 17083675 ---------------------ACGAGCAGTGTAGGGGTG--TGACTGTGGCAGAGA-GG----AGG----- i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4747726 33 - 29492121 -------------------------ATAGTTTGATGGT---TCTCTCTGATAGTTT-AA----TGG----- i oryLat2.chr7 C 0 C 0 s gadMor1.HE566360 344277 33 - 363564 -------------------------acaacacaacactggatcagagtgacacaa--------cac----- i gadMor1.HE566360 C 0 C 0 s danRer7.chr11 44512086 45 + 46661319 -----------------cacttggaacagcatagcagc---acactaaaacacttg-gaacaccac----- i danRer7.chr11 C 0 C 0 s petMar1.Contig205 26693 62 + 83855 ----GATCTGTGACAGATCCCCGGGGGTCTGTCACAGT---CCACTGGGGGACTGT-GA-CAGATCACTGG i petMar1.Contig205 C 0 C 0 e ornAna1.Contig28798 9761 0 + 11539 I a score=-29994.000000 s mm10.chrUn_GL456394 23297 10 + 24323 AGCA---------------TTGTGA s melGal1.chr3 265545 10 - 100405168 AGCA---------------AAAAGG i melGal1.chr3 I 106 C 0 s galGal4.chr2 96305857 1 + 148809762 ------------------------G i galGal4.chr2 I 8 C 0 s taeGut1.chr18 1462743 10 - 11201131 AGCA---------------catggc i taeGut1.chr18 C 0 C 0 s melUnd1.JH538460 995 10 + 1141 GGAC---------------ACCATG i melUnd1.JH538460 C 0 C 0 s chrPic1.JH584847 891230 10 + 2272089 AGca---------------ctatta i chrPic1.JH584847 C 0 T 31 s xenTro3.GL173416 398932 10 + 427269 GGCC---------------CAATGA i xenTro3.GL173416 C 0 C 0 s latCha1.JH126584 1876943 10 - 4223152 ATTA---------------TCGAAG i latCha1.JH126584 I 3 I 2 s tetNig2.chr21_random 2795239 10 - 3311323 TGCC---------------CTGAAA i tetNig2.chr21_random C 0 C 0 s fr3.HE591884 78583 10 + 143622 ggca---------------gtgagg i fr3.HE591884 C 0 C 0 s gasAcu1.chrVI 1393392 10 - 17083675 TGCA---------------TTGTGA i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4747759 10 - 29492121 TTCC---------------CTCTGA i oryLat2.chr7 C 0 C 0 s gadMor1.HE566360 344310 10 - 363564 aaca---------------ctggat i gadMor1.HE566360 C 0 C 0 s danRer7.chr11 44512131 25 + 46661319 aacaactcactaaaaatacttggaa i danRer7.chr11 C 0 C 0 s petMar1.Contig205 26755 10 + 83855 GGGA---------------CTGTCA i petMar1.Contig205 C 0 C 0 e ornAna1.Contig28798 9761 0 + 11539 I a score=-83230.000000 s mm10.chrUn_GL456394 23307 23 + 24323 -CAGCACTGGGGAGCGCTTTGAC-A s melGal1.chr3 265555 22 - 100405168 -AGGTTTGAGGGAACCTCTTGAC-- i melGal1.chr3 C 0 I 5 s galGal4.chr2 96305858 22 + 148809762 -ACATCCCAGTGGAACTCTTGCC-- i galGal4.chr2 C 0 I 197 s taeGut1.chr18 1462753 22 - 11201131 -agcacagagagagcaTGTGGCA-- i taeGut1.chr18 C 0 C 0 s melUnd1.JH538460 1005 23 + 1141 -ACGTCAGCAGGGGAACAGTGACG- i melUnd1.JH538460 C 0 C 0 s xenTro3.GL173416 398942 22 + 427269 -TATTGCTGTGGGGCCCAATGAT-- i xenTro3.GL173416 C 0 I 1 s latCha1.JH126584 1876955 8 - 4223152 -AGCACCGA---------------- i latCha1.JH126584 I 2 C 0 s tetNig2.chr21_random 2795249 12 - 3311323 -----------AGGGGTTCCAAT-- i tetNig2.chr21_random C 0 I 15 s fr3.HE591884 78593 12 + 143622 -----------cagcgtggcagc-- i fr3.HE591884 C 0 I 7 s gasAcu1.chrVI 1393402 4 - 17083675 -----------CGGG---------- i gasAcu1.chrVI C 0 I 4 s oryLat2.chr7 4747769 12 - 29492121 -----------TAGTTTGATGGT-- i oryLat2.chr7 C 0 I 14 s gadMor1.HE566360 344320 7 - 363564 -----------cagagtg------- i gadMor1.HE566360 C 0 I 4 s danRer7.chr11 44512156 12 + 46661319 -----------caccacagcaac-- i danRer7.chr11 C 0 I 39 s petMar1.Contig205 26765 16 + 83855 CAGATCACTGGGGGAC--------- i petMar1.Contig205 C 0 C 0 e chrPic1.JH584847 891240 31 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=1274.000000 s mm10.chrUn_GL456394 23330 4 + 24323 CCAC s melGal1.chr3 265582 4 - 100405168 ACAT i melGal1.chr3 I 5 I 24 s taeGut1.chr18 1462775 4 - 11201131 GCAC i taeGut1.chr18 C 0 C 0 s melUnd1.JH538460 1028 4 + 1141 TCAG i melUnd1.JH538460 C 0 C 0 s xenTro3.GL173416 398965 3 + 427269 -TAC i xenTro3.GL173416 I 1 I 1 s latCha1.JH126584 1876963 4 - 4223152 CCAC i latCha1.JH126584 C 0 I 1 s danRer7.chr11 44512207 2 + 46661319 --ac i danRer7.chr11 I 39 I 2 e tetNig2.chr21_random 2795261 15 - 3311323 I e gadMor1.HE566360 344327 4 - 363564 I e petMar1.Contig205 26781 0 + 83855 C e fr3.HE591884 78605 7 + 143622 I e gasAcu1.chrVI 1393406 4 - 17083675 I e galGal4.chr2 96305880 197 + 148809762 I e oryLat2.chr7 4747781 14 - 29492121 I e chrPic1.JH584847 891240 31 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-6140.000000 s mm10.chrUn_GL456394 23334 12 + 24323 ATGGAGCACCGT s melGal1.chr3 265610 12 - 100405168 TTGGAGACAGGT i melGal1.chr3 I 24 C 0 s galGal4.chr2 96306077 12 + 148809762 GTGGTGCTCTGT i galGal4.chr2 I 197 C 0 s melUnd1.JH538460 1032 12 + 1141 CAGGGGCACTGT i melUnd1.JH538460 C 0 C 0 s xenTro3.GL173416 398969 12 + 427269 GTGGGGCCCAAT i xenTro3.GL173416 I 1 C 0 s latCha1.JH126584 1876968 12 - 4223152 ATGAATCAGCAG i latCha1.JH126584 I 1 C 0 s tetNig2.chr21_random 2795276 3 - 3311323 ---------TCA i tetNig2.chr21_random I 15 C 0 s fr3.HE591884 78612 3 + 143622 ---------cga i fr3.HE591884 I 7 C 0 s oryLat2.chr7 4747795 6 - 29492121 ------CCCTCT i oryLat2.chr7 I 14 C 0 s danRer7.chr11 44512211 12 + 46661319 ttggaacaccat i danRer7.chr11 I 2 C 0 e gadMor1.HE566360 344327 4 - 363564 I e taeGut1.chr18 1462779 0 - 11201131 C e petMar1.Contig205 26781 0 + 83855 C e gasAcu1.chrVI 1393406 4 - 17083675 I e chrPic1.JH584847 891240 31 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-169176.000000 s mm10.chrUn_GL456394 23346 51 + 24323 G---ACACCAAAAGGGAGCACCGAGA--------------------------------CACCACAG----AGGAGCATGT-----GACAATATAG s melGal1.chr3 265622 52 - 100405168 GAGCACCCAGCAAAGCTGCGTGGGGA--------------------------------CGTC-----------TGCACACCTGGTGGGACCACCA i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306089 52 + 148809762 G---ACATTGCAATGGGGCTCTGTGA--------------------------------CCTCACAA----TGGGGCACACC----GATGCCACTA i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462779 42 - 11201131 -----------AAAGGGGCAC-ATGG--------------------------------CAGCACAA----AGGAGCACAT-----GGTGGCACAA i taeGut1.chr18 C 0 C 0 s melUnd1.JH538460 1044 52 + 1141 G---ACATCAGCAGGGGGCGCCGTGA--------------------------------CGTCACAGCACCAGAGGGACAC--------GTCACCA i melUnd1.JH538460 C 0 C 0 s latCha1.JH126584 1876980 44 - 4223152 ---GATACCATCA------ACTACGA--------------------------------CACAAAAC----CAAAGAAGAT-----GGTG-TACAG i latCha1.JH126584 C 0 C 0 s tetNig2.chr21_random 2795279 51 - 3311323 ---AACAGCACAGTGGACTCCAATGC--------------------------------CACCACAG----TGGGCTTCAT-----CACCACCACG i tetNig2.chr21_random C 0 I 22 s fr3.HE591884 78615 61 + 143622 ---ggcagcgtggcgcgtggcagcgtg----------gca------------gcgcggcagcgtgg----cgcgtggcag-----cgcggcagcg i fr3.HE591884 C 0 n 0 s gasAcu1.chrVI 1393410 56 - 17083675 -------GCACTGTGACTGACAGGGGG---------TGCA------------CTGTGGCAGAGAGG----AGG--TGCAC-----TGTGACAGAG i gasAcu1.chrVI I 4 I 27 s oryLat2.chr7 4747801 49 - 29492121 ---GATAGTCCGATGGTTCTCTGTGA--------------------------------TAGTCTGA----TGG--TTCCC-----TCTGATAGTT i oryLat2.chr7 C 0 I 37 s gadMor1.HE566360 344331 51 - 363564 ---aacacaacgctggatcagagtga---------------------------cacaacacaacac----tgg--ctcag-----agcgaca--- i gadMor1.HE566360 I 4 C 0 s danRer7.chr11 44512223 81 + 46661319 ---gacagcacattaaaacacTTGGAACACTATAGATGCATATTAAAAACACTTGGAACACCATGA----CAG--CACAT-----TAAAACACTT i danRer7.chr11 C 0 I 10 s petMar1.Contig205 26781 13 + 83855 --------TGTGACAGTCCAC-------------------------------------------------------------------------- i petMar1.Contig205 C 0 C 0 e xenTro3.GL173416 398981 0 + 427269 C e chrPic1.JH584847 891240 31 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-90233.000000 s mm10.chrUn_GL456394 23397 28 + 24323 TG---GAG-CACA-----------TG---------------ACAGCA-----GAGTGGAGCAC s melGal1.chr3 265674 33 - 100405168 TCCATGGG-TTGTAC---------CA---------------ACTGGA-----GAAGGGAGCAT i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306141 29 + 148809762 TC---GAG-CTCTG----------TG---------------ACTTCA-----CAGTGAGGCTC i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462821 28 - 11201131 AG---GAG-CACA-----------TG---------------GCAGCA-----CAAAGGAGCAC i taeGut1.chr18 C 0 C 0 s melUnd1.JH538460 1096 30 + 1141 TG---GGGACACCG----------TG---------------ACATCA-----TGCCGGGGTAC i melUnd1.JH538460 C 0 N 0 s latCha1.JH126584 1877024 28 - 4223152 TA---GAG-CACA-----------AC---------------AGAACA-----GTATGGTGTAC i latCha1.JH126584 C 0 C 0 s tetNig2.chr21_random 2795352 26 - 3311323 -----------------TGAACCACA---------------ATCCTG-----CCATGGACAAA i tetNig2.chr21_random I 22 I 2 s gasAcu1.chrVI 1393493 41 - 17083675 -----------------TGCACTGTGACAGAGAGGAGGTGCATTGTG-----ACAGAGAGGAG i gasAcu1.chrVI I 27 I 2 s oryLat2.chr7 4747887 29 - 29492121 --------------TGGTTCTCTGTG---------------ATAGTA-----TGATGGTTCTC i oryLat2.chr7 I 37 I 2 s gadMor1.HE566360 344382 19 - 363564 ------------------------ca---------------acgctg-----cctcagagcga i gadMor1.HE566360 C 0 I 2 s danRer7.chr11 44512314 28 + 46661319 -----------------------------------AGATGCATATTAAAAACACTTGGAACAC i danRer7.chr11 I 10 I 768 s petMar1.Contig205 26794 29 + 83855 --------------TGGGGGACTGTC---------------ACAGAC-----CACTGGGGGAC i petMar1.Contig205 C 0 C 0 e fr3.HE591884 78676 0 + 143622 I e xenTro3.GL173416 398981 0 + 427269 C e chrPic1.JH584847 891240 31 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-21791.000000 s mm10.chrUn_GL456394 23425 9 + 24323 T--GAGACAGT s melGal1.chr3 265707 11 - 100405168 TGAGGGCCACC i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306170 9 + 148809762 T--GGGACGTT i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462849 8 - 11201131 ---ATGGCGGC i taeGut1.chr18 C 0 C 0 s latCha1.JH126584 1877052 4 - 4223152 -------GGTA i latCha1.JH126584 C 0 C 0 s tetNig2.chr21_random 2795380 7 - 3311323 ----TGATAGC i tetNig2.chr21_random I 2 C 0 s gasAcu1.chrVI 1393536 7 - 17083675 ----GCATTGT i gasAcu1.chrVI I 2 C 0 s oryLat2.chr7 4747918 7 - 29492121 ----TGATAGT i oryLat2.chr7 I 2 C 0 s gadMor1.HE566360 344403 7 - 363564 ----caacaca i gadMor1.HE566360 I 2 C 0 s danRer7.chr7 77255421 7 - 77276063 ----TGAAACG i danRer7.chr7 I 2240 C 0 s petMar1.Contig205 26823 9 + 83855 --TATCACAGT i petMar1.Contig205 C 0 C 0 e fr3.HE591884 78676 0 + 143622 I e xenTro3.GL173416 398981 0 + 427269 C e chrPic1.JH584847 891240 31 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-88700.000000 s mm10.chrUn_GL456394 23434 47 + 24323 AGTGTGATGCACT--AATACAG---CAGTGG-----ACCACTGTGACAGCA-A-----CCTGA s melGal1.chr3 265718 38 - 100405168 GTCATG------------AATG---CAGTGCAAGCAGCCACTG----AGCG-GGCGAG----- i melGal1.chr3 C 0 I 156 s galGal4.chr2 96306179 49 + 148809762 ACTATGCGGCTCT---ATAATGTCACAGTGCTTCTCTCTGATGTCAAAGTG-G---------- i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462857 27 - 11201131 ACAAAGGAGCAC------ATGG---CAGCAC----------------AAAG-G---------- i taeGut1.chr18 C 0 C 0 s latCha1.JH126584 1877056 42 - 4223152 AATATGGCTACTG--TAGATAA---CAGTAT-----ACATTGGGTAAAGCA-A---------- i latCha1.JH126584 C 0 I 4 s tetNig2.chr21_random 2795387 42 - 3311323 ATCAACACAACcactgcaacag---cagcag-----tt-tctccGGCAACC------------ i tetNig2.chr21_random C 0 C 0 s gasAcu1.chrVI 1393543 28 - 17083675 GACAGGGGGTGCACTGTGACTG---TGGCAG-------------------------------- i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4747925 44 - 29492121 CTGATGGTTCCCTCTGATAGTT---TGATGG-----TTCTCTCTGATAGTCT----------- i oryLat2.chr7 C 0 C 0 s gadMor1.HE566360 344410 39 - 363564 acactggctCAGAGTGACACAA---CGCTGG---------CTCAGAGCGAC------------ i gadMor1.HE566360 C 0 C 0 s danRer7.chr7 77255428 43 - 77276063 CCAGTGTAAACCTCTGAAACAC---GAGTGT-----AAACCTCTGAAACAC------------ i danRer7.chr7 C 0 C 0 e petMar1.Contig205 26832 0 + 83855 C e fr3.HE591884 78676 0 + 143622 I e xenTro3.GL173416 398981 0 + 427269 C e chrPic1.JH584847 891240 31 + 2272089 T e ornAna1.Contig28798 9761 0 + 11539 I a score=-119346.000000 s mm10.chrUn_GL456394 23481 47 + 24323 ------------------------AACACTGT------GATGTCACAGTGGAGCAC-TTTTACAGCACATTGTGTCAT s melGal1.chr8 3498717 7 + 38656188 ---------------------------------------------------GATTC-TG------------------- i melGal1.chr8 C 0 C 0 s galGal4.chr2 96306228 45 + 148809762 ------------------------AGCTCTCT------GATGTCACAATTGAACTC-TGGCAACGCAATGGGACTC-- i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462884 45 - 11201131 -------------------------GGCACAT------GGTGGCACAAAGGAGCACATGGCAGGACAGAGAGAGCA-- i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 891209 45 + 2272089 ------------------------AACACAGT------CATGTTACAATGCAGcac-tattattgttgttgttcat-- i chrPic1.JH584847 T 31 C 0 s latCha1.JH126584 1877102 37 - 4223152 ------------------------TAcactgg------gttgcattaaaagggcaa-taatgagccga---------- i latCha1.JH126584 I 4 I 3 s tetNig2.chr21_random 2795429 48 - 3311323 -ACCATCTTCAGTGGAGGTTTCACGGCTTTTT------ATC-TAGCTGTGTTTCTC---------------------- i tetNig2.chr21_random C 0 C 0 s gasAcu1.chrVI 1393571 30 - 17083675 ----------AGAGGAGGT------GCATTGT------GAC-GGGAGGTG---CAC---------------------- i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4747969 52 - 29492121 AATGGTTCCCTCTGATAGTTTGATGGTTCTCTCTGATAGTC-TGATGGTT---CCC---------------------- i oryLat2.chr7 C 0 C 0 s gadMor1.HE566360 344449 49 - 363564 -ACAACACTGGATCAGAGCGACACAACGCTGG------ATCAGAGCGACGCAACAC---------------------- i gadMor1.HE566360 C 0 C 0 s danRer7.chr7 77255471 32 - 77276063 ---------CAGTGTAAAT-------TTCTGA------AAC--ACCAGTGTAAATC---------------------- i danRer7.chr7 C 0 C 0 e petMar1.Contig205 26832 0 + 83855 C e fr3.HE591884 78676 0 + 143622 I e xenTro3.GL173416 398981 0 + 427269 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-7924.000000 s mm10.chrUn_GL456394 23528 7 + 24323 CGTGACA s melGal1.chr8 3498724 5 + 38656188 --TGACG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96306273 7 + 148809762 TTTGACT i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462929 7 - 11201131 CATGGCA i taeGut1.chr18 C 0 C 0 s latCha1.JH126584 1877142 7 - 4223152 agtgagg i latCha1.JH126584 I 3 C 0 s tetNig2.chr21_random 2795477 6 - 3311323 TGT-ATG i tetNig2.chr21_random C 0 C 0 s gasAcu1.chrVI 1393601 3 - 17083675 TGT---- i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4748021 7 - 29492121 TCTGATA i oryLat2.chr7 C 0 C 0 s gadMor1.HE566360 344498 7 - 363564 AACGCTG i gadMor1.HE566360 C 0 C 0 s danRer7.chr7 77255503 7 - 77276063 TCAGAAA i danRer7.chr7 C 0 C 0 e petMar1.Contig205 26832 0 + 83855 C e fr3.HE591884 78676 0 + 143622 I e xenTro3.GL173416 398981 0 + 427269 C e chrPic1.JH584847 891254 0 + 2272089 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-66653.000000 s mm10.chrUn_GL456394 23535 23 + 24323 CCATAA-------------TGAGCCT--GTGC----CAGCAC s melGal1.chr8 3498729 26 + 38656188 TCACAA-------------TGGGGCTCTGTGAT---TGTCAC i melGal1.chr8 C 0 C 0 s galGal4.chr2 96306280 25 + 148809762 TCAAAA-------------TGGGGCTCTGTGA----TGTCAC i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462936 24 - 11201131 GCACAA-------------AGGGGCAC-ATGG----TGGCAC i taeGut1.chr18 C 0 C 0 s latCha1.JH126584 1877149 17 - 4223152 taatcc-------------tgctgctttat------------ i latCha1.JH126584 C 0 C 0 s tetNig2.chr21_random 2795483 21 - 3311323 CTT----------------TGGTTCTGAGCAAC---CAAC-- i tetNig2.chr21_random C 0 I 1 s gasAcu1.chrVI 1393604 3 - 17083675 -------------------------------------GAC-- i gasAcu1.chrVI C 0 I 1 s oryLat2.chr7 4748028 24 - 29492121 GTTTAA-------------TGGTTCCCTCTGAT---AGTC-- i oryLat2.chr7 C 0 I 1 s gadMor1.HE566360 344505 40 - 363564 GCTCAGAGCAACACAACACTGGATCAGAGCGACACAACAC-- i gadMor1.HE566360 C 0 I 1 s danRer7.chr7 77255510 24 - 77276063 CACCAG-------------TGTTAATATATGAG---ACAC-- i danRer7.chr7 C 0 I 1 s petMar1.Contig205 26832 23 + 83855 ---------------CCACTGGGGGACTGTCACA--GATC-- i petMar1.Contig205 C 0 C 0 e fr3.HE591884 78676 0 + 143622 I e xenTro3.GL173416 398981 0 + 427269 C e chrPic1.JH584847 891254 0 + 2272089 C e ornAna1.Contig28798 9761 0 + 11539 I a score=-96542.000000 s mm10.chrUn_GL456394 23558 54 + 24323 AGT----GGATCAC--------------------TGTGACACCACAGTGGAGCACT-------------GGGACAACAAAGTGGAATATGT s ornAna1.Ultra516 5160083 51 - 10039024 AGT----GGAATAA--------------------TCTCACAAGCAAGTGGAATAAT-------------GCCACAAGCAAGTGGAATA--- i ornAna1.Ultra516 I 958 C 0 s melGal1.chr8 3498755 31 + 38656188 AGT----AGGGCTC--------------------TGTGACGTTACAATGGGGCTC------------------------------------ i melGal1.chr8 C 0 C 0 s galGal4.chr2 96306305 54 + 148809762 AGT----GGAGCAT--------------------TGTGACATCACCGTGGGGCTCT-------------GGTACGTCACAATGCGAATCTA i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1462960 73 - 11201131 AAA----GGAGCACATGGCAGGacagagagagcacatggcagcacaaaggggcac--------------atggcagcacagagagagcaca i taeGut1.chr18 C 0 C 0 s latCha1.JH126584 1877166 64 - 4223152 aag----tcattgg--------------------tgtgaccacactttagaatactgtgtgcaattctggtcaccgcaatataaaaag--- i latCha1.JH126584 C 0 C 0 s tetNig2.chr21_random 2795505 50 - 3311323 GTTAACAAATGTGA--------------------CACAACAATGA--AATTATTTC-------------AAAGCA---GACTGAAATT--- i tetNig2.chr21_random I 1 I 8 s gasAcu1.chrVI 1393608 52 - 17083675 GACAGGAGGTGCAC--------------------TGTGGCAGAGAGGAGATGCACT-------------GTGGCA---GAGAGGAGGT--- i gasAcu1.chrVI I 1 I 1 s oryLat2.chr7 4748053 48 - 29492121 GAT----GGTTCTC--------------------TGTGATAGTCTAATGGTTCCCT-------------CTGATA---GCTTGATGGT--- i oryLat2.chr7 I 1 I 19 s gadMor1.HE566360 344546 40 - 363564 GGC--TCAGAGCGA--------------------CACGACACAACGCTGGCTcaga-------------gcaaca---------------- i gadMor1.HE566360 I 1 C 0 s danRer7.chr7 77255535 51 - 77276063 AGT--GTAAATCTC--------------------TGAAACACCAGTGTAAATCTCA-------------GAAACA--CCAGTGTAAAT--- i danRer7.chr7 I 1 I 5 s petMar1.Contig205 26855 38 + 83855 ----ACTGGGGGAC--------------------TGTCACAGATCACTGGGGGACT-------------GAGACA---------------- i petMar1.Contig205 C 0 C 0 e fr3.HE591884 78676 0 + 143622 I e xenTro3.GL173416 398981 0 + 427269 C e chrPic1.JH584847 891254 0 + 2272089 C a score=-1456.000000 s mm10.chrUn_GL456394 23612 1 + 24323 A s melGal1.chr8 3498786 1 + 38656188 T i melGal1.chr8 C 0 C 0 s galGal4.chr2 96306359 1 + 148809762 T i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1463033 1 - 11201131 t i taeGut1.chr18 C 0 C 0 s tetNig2.chr21_random 2795563 1 - 3311323 A i tetNig2.chr21_random I 8 C 0 s fr3.HE591961 84228 1 + 93265 A i fr3.HE591961 T 276 C 0 s oryLat2.chr7 4748120 1 - 29492121 T i oryLat2.chr7 I 19 C 0 s gadMor1.HE566360 344586 1 - 363564 c i gadMor1.HE566360 C 0 C 0 s danRer7.chr7 77255591 1 - 77276063 A i danRer7.chr7 I 5 C 0 e petMar1.Contig205 26893 0 + 83855 C e latCha1.JH126584 1877230 0 - 4223152 C e gasAcu1.chrVI 1393660 1 - 17083675 I e xenTro3.GL173416 398981 0 + 427269 C e chrPic1.JH584847 891254 0 + 2272089 C e ornAna1.Ultra516 5160134 0 - 10039024 C a score=-12295.000000 s mm10.chrUn_GL456394 23613 10 + 24323 GATACCAC-----AG s ornAna1.Ultra516 5160134 14 - 10039024 -ATGCCACAAGCAAG i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498787 10 + 38656188 GATGTCAC-----AG i melGal1.chr8 C 0 C 0 s galGal4.chr2 96306360 10 + 148809762 GATGTGAC-----AG i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1463034 10 - 11201131 ggcagcac-----aa i taeGut1.chr18 C 0 C 0 s xenTro3.GL173416 398981 10 + 427269 GATATTAC-----TG i xenTro3.GL173416 C 0 C 0 s latCha1.JH126584 1877230 10 - 4223152 gatattgc-----ag i latCha1.JH126584 C 0 C 0 s tetNig2.chr21_random 2795564 3 - 3311323 AAT------------ i tetNig2.chr21_random C 0 C 0 s fr3.HE591961 84229 10 + 93265 AATATCCC-----AG i fr3.HE591961 C 0 C 0 s gasAcu1.chrVI 1393661 5 - 17083675 -----CAC-----TG i gasAcu1.chrVI I 1 C 0 s oryLat2.chr7 4748121 10 - 29492121 GATAGGCC-----GA i oryLat2.chr7 C 0 C 0 s gadMor1.HE566360 344587 10 - 363564 aacacaac-----ac i gadMor1.HE566360 C 0 C 0 s danRer7.chr7 77255592 10 - 77276063 AACACCAG-----TG i danRer7.chr7 C 0 C 0 s petMar1.Contig205 26893 6 + 83855 --GATCAC------- i petMar1.Contig205 C 0 n 0 e chrPic1.JH584847 891254 0 + 2272089 C a score=-8922.000000 s mm10.chrUn_GL456394 23623 18 + 24323 TGGAGTACTGTGACAGAA s ornAna1.Ultra516 5160148 18 - 10039024 TGGAATAATCTCACAAGC i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498797 18 + 38656188 TGTGGCTCTGTGACGTCA i melGal1.chr8 C 0 C 0 s galGal4.chr2 96306370 18 + 148809762 TGAAGCTCTCTGCTATCA i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1463044 17 - 11201131 aggggcac-atggcagca i taeGut1.chr18 C 0 C 0 s xenTro3.GL173416 398991 18 + 427269 TGGGGCCCAATGATATTA i xenTro3.GL173416 C 0 C 0 s latCha1.JH126584 1877240 14 - 4223152 tg----attgagaaggta i latCha1.JH126584 C 0 C 0 s tetNig2.chr21_random 2795567 18 - 3311323 TGATGTTTGGTAACATAA i tetNig2.chr21_random C 0 N 0 s fr3.HE591961 84239 18 + 93265 TCATGCACTGAAACATCC i fr3.HE591961 C 0 C 0 s gasAcu1.chrVI 1393666 14 - 17083675 TGA----CTGTGACAGAG i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4748131 18 - 29492121 TGGTTCTCTGTGATAGTC i oryLat2.chr7 C 0 C 0 s gadMor1.HE566360 344597 18 - 363564 tggctcagagcgacaaaa i gadMor1.HE566360 C 0 C 0 s danRer7.chr7 77255602 18 - 77276063 TAAATCTCAGAAACACCA i danRer7.chr7 C 0 C 0 s petMar1.Contig1556 48626 17 + 56846 TGGAG-ACTGTGACACCA i petMar1.Contig1556 I 7 C 0 e chrPic1.JH584847 891254 0 + 2272089 C a score=-77438.000000 s mm10.chrUn_GL456394 23641 8 + 24323 C------------------------------------------AGTGGA----G s ornAna1.Ultra516 5160166 8 - 10039024 A------------------------------------------AGTGGA----A i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498815 8 + 38656188 T------------------------------------------AATAAG----G i melGal1.chr8 C 0 C 0 s galGal4.chr2 96306388 49 + 148809762 tttttttGACTCCGTGACAACACCGT-TGAACTACGGCATTGCAGTAGG----G i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1463061 41 - 11201131 c-------------agagaTTCTTGTCTCCAccagaccctggcaggaggaggtg i taeGut1.chr18 C 0 C 0 s xenTro3.GL173416 399009 8 + 427269 C------------------------------------------TGTGGG----G i xenTro3.GL173416 C 0 C 0 s latCha1.JH126584 1877254 8 - 4223152 c------------------------------------------agagga----g i latCha1.JH126584 C 0 n 0 s fr3.HE591961 84257 8 + 93265 ---------------------------------------CAAACGTG------- i fr3.HE591961 C 0 C 0 s gasAcu1.chrVI 1393680 8 - 17083675 ---------------------------------------AAGAGGTG------- i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4748149 8 - 29492121 ---------------------------------------TAATGGTT------- i oryLat2.chr7 C 0 C 0 s danRer7.chr7 77255620 3 - 77276063 --------------------------------------------GTG------- i danRer7.chr7 C 0 C 0 s petMar1.Contig1556 48643 8 + 56846 -------------------------------------CATGGAGA--------- i petMar1.Contig1556 C 0 C 0 e gadMor1.HE566360 344615 0 - 363564 C e chrPic1.JH584847 891254 0 + 2272089 C a score=6136.000000 s mm10.chrUn_GL456394 23649 13 + 24323 CA-----CTGTGACACCA s ornAna1.Ultra516 5160174 13 - 10039024 TA-----ATGCCACAAGC i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498823 13 + 38656188 CT-----CTGTGACATCA i melGal1.chr8 C 0 C 0 s galGal4.chr2 96306437 13 + 148809762 CT-----CTGTGACATCT i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1463102 13 - 11201131 cc-----acgtggcagag i taeGut1.chr18 C 0 C 0 s xenTro3.GL173416 399017 13 + 427269 CC-----CAATGATATTA i xenTro3.GL173416 C 0 I 57 s fr3.HE591961 84265 13 + 93265 CA-----CTGAAACATCC i fr3.HE591961 C 0 I 3 s gasAcu1.chrVI 1393688 13 - 17083675 CA-----CTGTGGCAGAG i gasAcu1.chrVI C 0 I 3 s oryLat2.chr7 4748157 13 - 29492121 CC-----CTCTGACATTT i oryLat2.chr7 C 0 I 3 s gadMor1.HE566360 344615 13 - 363564 ca-----ctggatcagac i gadMor1.HE566360 C 0 I 26 s danRer7.chr7 77255623 18 - 77276063 TAAATTTCTAGAACACCA i danRer7.chr7 C 0 I 3 s petMar1.Contig1556 48651 13 + 56846 CA-----CTGTGACACTG i petMar1.Contig1556 C 0 C 0 e latCha1.JH126584 1877262 0 - 4223152 I e chrPic1.JH584847 891254 0 + 2272089 C a score=-26348.000000 s mm10.chrUn_GL456394 23662 6 + 24323 ----CAGTGG s ornAna1.Ultra516 5160187 6 - 10039024 ----AAGTGG i ornAna1.Ultra516 C 0 C 0 s melGal1.chr8 3498836 6 + 38656188 ----TTTTGG i melGal1.chr8 C 0 n 0 s galGal4.chr2 96306450 6 + 148809762 ----GAATGG i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1463115 6 - 11201131 ----ccctgc i taeGut1.chr18 C 0 I 6 s xenTro3.GL173416 399087 5 + 427269 ----CAGTC- i xenTro3.GL173416 I 57 C 0 s fr3.HE591961 84281 3 + 93265 ----CCG--- i fr3.HE591961 I 3 C 0 s gasAcu1.chrVI 1393704 3 - 17083675 ----AGG--- i gasAcu1.chrVI I 3 C 0 s oryLat2.chr7 4748173 3 - 29492121 ----TGG--- i oryLat2.chr7 I 3 C 0 s gadMor1.HE566360 344654 3 - 363564 ----cag--- i gadMor1.HE566360 I 26 C 0 s danRer7.chr7 77255644 3 - 77276063 ----TAA--- i danRer7.chr7 I 3 C 0 s petMar1.Contig1556 48664 6 + 56846 CATGGA---- i petMar1.Contig1556 C 0 C 0 e latCha1.JH126584 1877262 0 - 4223152 I e chrPic1.JH584847 891254 0 + 2272089 C a score=1388.000000 s mm10.chrUn_GL456394 23668 13 + 24323 AGCACTGGGACAA s ornAna1.Ultra516 5160193 13 - 10039024 AATAAAGTGACAA i ornAna1.Ultra516 C 0 C 0 s galGal4.chr2 96306456 13 + 148809762 AGCCCTGTGGCAT i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1463127 7 - 11201131 gGACCTG------ i taeGut1.chr18 I 6 C 0 s xenTro3.GL173416 399092 13 + 427269 AGTACTAGTGCAT i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84284 13 + 93265 TGCACTGAAACAT i fr3.HE591961 C 0 C 0 s gasAcu1.chrVI 1393707 13 - 17083675 TGCACCGTGACAG i gasAcu1.chrVI C 0 C 0 s oryLat2.chr7 4748176 13 - 29492121 TTCTCTCTGATAG i oryLat2.chr7 C 0 C 0 s gadMor1.HE566360 344657 13 - 363564 agcaacacaacac i gadMor1.HE566360 C 0 C 0 s danRer7.chr7 77255647 13 - 77276063 ATCTCTGAAACAC i danRer7.chr7 C 0 C 0 s petMar1.Contig1556 48670 13 + 56846 GACACTGTGACAT i petMar1.Contig1556 C 0 C 0 e melGal1.chr8 3498842 0 + 38656188 I e latCha1.JH126584 1877262 0 - 4223152 I e chrPic1.JH584847 891254 0 + 2272089 C a score=-67105.000000 s mm10.chrUn_GL456394 23681 48 + 24323 CAAAGTGGATCAATGTCACACCACAGCA---GAGCACTGTGACACCACAGT s ornAna1.Ultra516 5160206 48 - 10039024 GCAAGTGGAATAATGCCACAAGCAAGTG---GAATAATCTCACAAGCAACT i ornAna1.Ultra516 C 0 C 0 s melGal1.chr3 265912 41 - 100405168 CAAA--------CTGAAGCAACCAAACCG--AAGCCTAGTGACCCTAGACT i melGal1.chr3 I 156 C 0 s galGal4.chr2 96306469 48 + 148809762 CAAAAT---ATTCTGTGACATCACAATAGGTGGGCTCTGTGATGTCACAAT i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1463134 37 - 11201131 ------------CTGGAAGCTGACAGACA--GAACATGATCACCCTATTGA i taeGut1.chr18 C 0 C 0 s xenTro3.GL173416 399105 42 + 427269 -AAAAGTGATTAACGTGCTACTAAGTCA---GTTCATTGGGGC-----AGT i xenTro3.GL173416 C 0 C 0 s fr3.HE591961 84297 48 + 93265 CCCAGTCATGCACTGAAACATCCCAGTC---GTGCACTGAAACATCCCAAA i fr3.HE591961 C 0 T 286 s gasAcu1.chrVI 1393720 40 - 17083675 AGAGGAGGTGCACTGTGACAGAGAGGAG---GTGCACTGTGAC-------- i gasAcu1.chrVI C 0 I 1 s oryLat2.chr7 4748189 48 - 29492121 TCTGATGGTTCTCTCTGATAGTTTGATG---GTTCCCTGTGATAGTCTAAT i oryLat2.chr7 C 0 I 8 s gadMor1.HE566360 344670 40 - 363564 aacactggctcagaacaacacaacactg---gctTCCCTCGGT-------- i gadMor1.HE566360 C 0 C 0 s danRer7.chr7 77255660 46 - 77276063 CAGTGTAAATCTCAGAAACACCAGTGTA---AACCTCAGAAACACCAGT-- i danRer7.chr7 C 0 I 1 s petMar1.Contig1556 48683 46 + 56846 CACATGGAGACACTGTGACACTGCATGG---AGACACTGTGACACTGCA-- i petMar1.Contig1556 C 0 C 0 e latCha1.JH126584 1877262 0 - 4223152 I e chrPic1.JH584847 891254 0 + 2272089 C a score=-9911.000000 s mm10.chrUn_GL456394 23729 9 + 24323 GTAGGACT-T s ornAna1.Ultra516 5160254 10 - 10039024 GGAATAATGC i ornAna1.Ultra516 C 0 C 0 s melGal1.chr3 265953 9 - 100405168 GAAGCATTG- i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306517 9 + 148809762 GTAACTGTG- i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1463171 9 - 11201131 AGGACATTT- i taeGut1.chr18 C 0 C 0 s xenTro3.GL173416 399147 7 + 427269 GGGATTT--- i xenTro3.GL173416 C 0 C 0 s gadMor1.HE566360 344710 1 - 363564 ---------C i gadMor1.HE566360 C 0 I 8 e danRer7.chr7 77255706 1 - 77276063 I e petMar1.Contig1556 48729 0 + 56846 C e latCha1.JH126584 1877262 0 - 4223152 I e fr3.HE591961 84345 286 + 93265 T e gasAcu1.chrVI 1393760 1 - 17083675 I e oryLat2.chr7 4748237 8 - 29492121 I e chrPic1.JH584847 891254 0 + 2272089 C a score=-4343.000000 s mm10.chrUn_GL456394 23738 9 + 24323 TTAAGCTCA s ornAna1.Ultra516 5160264 9 - 10039024 CCCAAACAA i ornAna1.Ultra516 C 0 C 0 s fr3.HE591961 84059 7 + 93265 --TAAACAT i fr3.HE591961 T 286 I 4 s gasAcu1.chrVI 1393761 6 - 17083675 --GGGACA- i gasAcu1.chrVI I 1 I 1 s oryLat2.chr7 4748245 7 - 29492121 --CTGATAG i oryLat2.chr7 I 8 I 4 s gadMor1.HE566360 344719 7 - 363564 --CGGATGT i gadMor1.HE566360 I 8 n 8 s danRer7.chr7 77255707 7 - 77276063 --TAAATCT i danRer7.chr7 I 1 I 2 e melGal1.chr3 265962 0 - 100405168 C e taeGut1.chr18 1463180 0 - 11201131 C e petMar1.Contig1556 48729 0 + 56846 C e latCha1.JH126584 1877262 0 - 4223152 I e xenTro3.GL173416 399154 0 + 427269 C e galGal4.chr2 96306526 0 + 148809762 C e chrPic1.JH584847 891254 0 + 2272089 C a score=-36443.000000 s mm10.chrUn_GL456394 23747 34 + 24323 GTGGAGCACTGTGACAGCACAGTCGAGCAATGTG s ornAna1.Ultra516 5160273 34 - 10039024 GTGGAATAATCTCCCAAACAAGTGGAATAATCTC i ornAna1.Ultra516 C 0 C 0 s melGal1.chr3 265962 3 - 100405168 -------------------------------ATG i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306526 21 + 148809762 GTGTAACA-------------ATATGGTTCTGTG i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1463180 20 - 11201131 --AGAACAC------------GTGTTGCTGAATG i taeGut1.chr18 C 0 C 0 s fr3.HE591961 84070 34 + 93265 GTCGTGCACTGAAACATCCCAGTCATGCACTGAA i fr3.HE591961 I 4 C 0 s gasAcu1.chrVI 1393768 34 - 17083675 GAGGTGCACTGTGACAGAGAGGAGGTGCACTGTG i gasAcu1.chrVI I 1 I 62 s oryLat2.chr7 4748256 26 - 29492121 ATGGTTCCCTCTGATA--------GTTCTCTCTG i oryLat2.chr7 I 4 I 8 s gadMor1.HE568198 31433 10 + 246062 GTAGACCACA------------------------ i gadMor1.HE568198 T 374 C 0 s danRer7.chr7 77255716 24 - 77276063 ----------GAAACACCAGTGTAAATCTCAGAA i danRer7.chr7 I 2 C 0 s petMar1.Contig1556 48729 34 + 56846 TGGAGACACTGTGACATCACATGGAGACACTGTG i petMar1.Contig1556 C 0 C 0 e latCha1.JH126584 1877262 0 - 4223152 I e xenTro3.GL173416 399154 0 + 427269 C e chrPic1.JH584847 891254 0 + 2272089 C a score=3202.000000 s mm10.chrUn_GL456394 23781 4 + 24323 ACAC s ornAna1.Ultra516 5160307 4 - 10039024 ACAA i ornAna1.Ultra516 C 0 I 1 s melGal1.chr3 265965 4 - 100405168 ACAG i melGal1.chr3 C 0 I 1 s galGal4.chr2 96306547 4 + 148809762 GCAT i galGal4.chr2 C 0 I 1 s taeGut1.chr18 1463200 4 - 11201131 GCAA i taeGut1.chr18 C 0 I 1 s fr3.HE591961 84104 4 + 93265 ACAT i fr3.HE591961 C 0 C 0 s oryLat2.chr7 4748290 1 - 29492121 --A- i oryLat2.chr7 I 8 C 0 s gadMor1.HE568198 31443 4 + 246062 ACAC i gadMor1.HE568198 C 0 C 0 s danRer7.chr7 77255740 4 - 77276063 ACAC i danRer7.chr7 C 0 C 0 s petMar1.Contig1556 48763 4 + 56846 ACAC i petMar1.Contig1556 C 0 C 0 e latCha1.JH126584 1877262 0 - 4223152 I e gasAcu1.chrVI 1393802 62 - 17083675 I e xenTro3.GL173416 399154 0 + 427269 C e chrPic1.JH584847 891254 0 + 2272089 C a score=-6535.000000 s mm10.chrUn_GL456394 23785 3 + 24323 --CAC s ornAna1.Ultra516 5160312 3 - 10039024 --CAA i ornAna1.Ultra516 I 1 C 0 s melGal1.chr3 265970 3 - 100405168 --AAA i melGal1.chr3 I 1 C 0 s galGal4.chr2 96306552 3 + 148809762 --ACA i galGal4.chr2 I 1 C 0 s taeGut1.chr18 1463205 3 - 11201131 --ATG i taeGut1.chr18 I 1 C 0 s fr3.HE591961 84108 3 + 93265 --CCC i fr3.HE591961 C 0 I 1 s gadMor1.HE568198 31447 3 + 246062 --CAC i gadMor1.HE568198 C 0 I 2 s danRer7.chr7 77255744 3 - 77276063 --CAG i danRer7.chr7 C 0 I 1 s petMar1.Contig1556 48767 3 + 56846 TGC-- i petMar1.Contig1556 C 0 C 0 e latCha1.JH126584 1877262 0 - 4223152 I e gasAcu1.chrVI 1393802 62 - 17083675 I e xenTro3.GL173416 399154 0 + 427269 C e oryLat2.chr7 4748291 0 - 29492121 C e chrPic1.JH584847 891254 0 + 2272089 C a score=-17400.000000 s mm10.chrUn_GL456394 23788 36 + 24323 GTGGAG----CACAGTGAC------ACCTAAGTGGAATATTGTGAC s ornAna1.Ultra516 5160315 36 - 10039024 CTGGAA----TAATGCCAC------AAGCAACTGGAATAATGCCAC i ornAna1.Ultra516 C 0 C 0 s melGal1.chr3 265973 36 - 100405168 CCAAAG----CACAGTGAT------CCCAAAGTGGAGGTTGGTGAC i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306555 36 + 148809762 ATGGAG----CCCTGTGAG------GTCACAGTGGAGCCCTGTGAC i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1463208 46 - 11201131 AGATAGGTCACGTAGTGAGAATTACCACATAAGGAAATACTGTGCC i taeGut1.chr18 C 0 N 0 s chrPic1.JH584847 891254 28 + 2272089 ----------CAAGTTTAg--------tatggtagtgcctaaggac i chrPic1.JH584847 C 0 I 18 s fr3.HE591961 84112 36 + 93265 AACGTG----CACTGAAAC------ATCCCAGTCGTGCACTGAAAC i fr3.HE591961 I 1 C 0 s gasAcu1.chrI 1143090 36 + 28185914 GTAGAA----CCCTTTAAC------ACCTCAGTAGAACCTTTTAAT i gasAcu1.chrI T 207 C 0 s oryLat2.chr7 4748291 35 - 29492121 -TGGTT----CTCTGTGAT------AGTCCGATGGTTCCCTCTGAT i oryLat2.chr7 C 0 C 0 s gadMor1.HE568198 31452 36 + 246062 GTAGAC----CACTAGAGC------ACTACTGTAGACCACTAGAGT i gadMor1.HE568198 I 2 C 0 s danRer7.chr7 77255748 36 - 77276063 GTAAAT----CTCAGAAAC------ACCAGTGTAAATCTCTGAAAC i danRer7.chr7 I 1 C 0 s petMar1.Contig1556 48770 37 + 56846 ATGGAGA---CACTGTGAC------ACTGCATGGAGACACTGTGAC i petMar1.Contig1556 C 0 C 0 e latCha1.JH126584 1877262 0 - 4223152 I e xenTro3.GL173416 399154 0 + 427269 C a score=-10500.000000 s mm10.chrUn_GL456394 23824 26 + 24323 ACTACAGTGGAGCACTGTGACA--CCAC s ornAna1.Ultra516 5160351 28 - 10039024 AAGCAAGTGGAATAATGTCACAAGCAAC i ornAna1.Ultra516 C 0 C 0 s melGal1.chr3 266009 26 - 100405168 CCCAGACTCAAGCATGGTGACA--CCAA i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306591 26 + 148809762 ATCAATATTGGGCTCTGTGACG--TCAC i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1124983 25 + 11201131 -GCGGGCTGGAGCGCGGAGGAA--TCCC i taeGut1.chr18 N 0 C 0 s chrPic1.JH584847 891300 26 + 2272089 cattgtgctaagcccTGCACAA--ACAG i chrPic1.JH584847 I 18 C 0 s fr3.HE591961 84148 26 + 93265 CTCCCAAACGTGCACTGAAATA--TCCC i fr3.HE591961 C 0 T 50 s gasAcu1.chrI 1143126 26 + 28185914 ACCTCAGTAGAACCCTTTAACA--CCTC i gasAcu1.chrI C 0 C 0 s oryLat2.chr7 4748326 26 - 29492121 AGTCCAATAGTTCTCTCTGATA--GTCT i oryLat2.chr7 C 0 C 0 s gadMor1.HE568198 31488 26 + 246062 ACTACTGTAGACCACTAGAGCA--CTAC i gadMor1.HE568198 C 0 C 0 s danRer7.chr7 77255784 26 - 77276063 ACCAGTGTAAATCTCAGAAACA--CCAG i danRer7.chr7 C 0 I 9 s petMar1.Contig1556 48807 26 + 56846 ACTGCATGGAGACACTGTGACA--CTGC i petMar1.Contig1556 C 0 C 0 e latCha1.JH126584 1877262 0 - 4223152 I e xenTro3.GL173416 399154 0 + 427269 C a score=-31383.000000 s mm10.chrUn_GL456394 23850 18 + 24323 TGTGTA-------TCACTCTGAAAG s ornAna1.Ultra516 5160379 17 - 10039024 TG-GAA-------TAATGCCACAAG i ornAna1.Ultra516 C 0 C 0 s melGal1.chr3 266035 19 - 100405168 ACTGAAGAA----TGGTGCCACC-- i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306617 22 + 148809762 TATGGGGCACTC-TGATGCCACA-- i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1125008 17 + 11201131 -----GGGGCTG-CGCTGCCTCT-- i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 891326 23 + 2272089 AGTAGCAGGCAGATTCTGCCTCT-- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399154 6 + 427269 -----------------ACCTCA-- i xenTro3.GL173416 C 0 I 23 s gasAcu1.chrI 1143152 9 + 28185914 --------------AGTAGAACC-- i gasAcu1.chrI C 0 I 11 s oryLat2.chr7 4748352 9 - 29492121 --------------AATGGTTCC-- i oryLat2.chr7 C 0 I 11 e danRer7.chr7 77255810 9 - 77276063 I e gadMor1.HE568198 31514 0 + 246062 C e petMar1.Contig1556 48833 0 + 56846 C e latCha1.JH126584 1877262 0 - 4223152 I e fr3.HE591961 84174 50 + 93265 T a score=-6953.000000 s mm10.chrUn_GL456394 23868 4 + 24323 CAAA s ornAna1.Ultra516 5160396 4 - 10039024 CAGA i ornAna1.Ultra516 C 0 N 0 s latCha1.AFYH01275859 3194 3 - 7455 CTG- i latCha1.AFYH01275859 I 7 C 0 s gasAcu1.chrI 1143172 2 + 28185914 CA-- i gasAcu1.chrI I 11 C 0 s oryLat2.chr7 4748372 2 - 29492121 CG-- i oryLat2.chr7 I 11 C 0 s gadMor1.HE568198 31514 1 + 246062 -T-- i gadMor1.HE568198 C 0 C 0 s danRer7.chr7 77255819 2 - 77276063 CA-- i danRer7.chr7 I 9 C 0 s petMar1.Contig1556 48833 1 + 56846 -A-- i petMar1.Contig1556 C 0 C 0 e melGal1.chr3 266054 0 - 100405168 C e taeGut1.chr18 1125025 0 + 11201131 C e fr3.HE591961 84174 50 + 93265 T e xenTro3.GL173416 399160 23 + 427269 I e galGal4.chr2 96306639 0 + 148809762 C e chrPic1.JH584847 891349 0 + 2272089 C a score=-18319.000000 s mm10.chrUn_GL456394 23872 12 + 24323 GGGGAGCAATGT s melGal1.chr3 266054 9 - 100405168 AAA---CCAAAT i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306639 12 + 148809762 ATAAGGCCCGGT i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1125025 5 + 11201131 GAA-------GG i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 891349 10 + 2272089 AAG--ATTTTAC i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399183 7 + 427269 -----GCTACGT i xenTro3.GL173416 I 23 C 0 s gasAcu1.chrI 1143174 2 + 28185914 ----------GT i gasAcu1.chrI C 0 I 10 s oryLat2.chr7 4748374 2 - 29492121 ----------AT i oryLat2.chr7 C 0 I 10 s gadMor1.HE568198 31515 2 + 246062 ----------GT i gadMor1.HE568198 C 0 I 7 s danRer7.chr7 77255821 2 - 77276063 ----------GA i danRer7.chr7 C 0 I 1 s petMar1.Contig1556 48834 12 + 56846 TGGAGACACTGT i petMar1.Contig1556 C 0 C 0 e latCha1.AFYH01275859 3197 0 - 7455 C e fr3.HE591961 84174 50 + 93265 T a score=-102405.000000 s mm10.chrUn_GL456394 23884 57 + 24323 GACAC-------------C-------------------ACAGTGGATCACTG-------T---------GACACCACAG--TGGAGCATTGTAACAGTA---------------CAGTGGAG s melGal1.chr3 266063 64 - 100405168 CATGTTGG------CCAGC-------------------AAACCGAAGCTTGG-------T---------GACACCAGAC--TGAAGTATGGTGATCCCA---------------AACTGAAG i melGal1.chr3 C 0 I 14 s galGal4.chr2 96306651 57 + 148809762 GATGT-------------C-------------------ACAATGGGCCCCCG-------T---------GATGTTACAA--TGGAGCTCTGTGATGTCA---------------CACTGGGG i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1125030 59 + 11201131 CATCT-------------CCG-----------------GGATTGGAACGGAA-------T---------AATAACAACA--GGGAGGATGGTGATGGTG---------------AGAGGGAG i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 891359 55 + 2272089 AATCT-------------C---------------------AATAGATCAGAC-------A---------GACACAGCAC--GGGGGAAGGGGTATCCTA---------------CACAGGCA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399190 72 + 427269 AAATTGCGGAAGTTTTGGC-------------------GTAATGTGTAACTG-------TTGTGACCGGGCCCCCATAC--AGAAGAACTGTCACAGGG---------------C------- i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 3197 76 - 7455 --------------------GTGGTGGGATAAGGATCTGCAGTGGCTCACTGGCACCCCT---------GGTGGCAGGA--TAAGAAACTGCAATGGTT---------------CACTGGTG i latCha1.AFYH01275859 C 0 I 14 s fr3.HE591961 84124 57 + 93265 AACAT-------------C-------------------CCAGTCGTGCACTG-------A---------AACCTCCCAA--ACGTGCACTGAAATATCC---------------CAGTCATG i fr3.HE591961 T 50 I 2 s gasAcu1.chrI 1143186 57 + 28185914 AACAC-------------C-------------------TCAGTAGAACCCTT-------T---------AATACCTCAG--TAAAACCCTTTAATACCT---------------CAGTAGAA i gasAcu1.chrI I 10 I 2 s oryLat2.chr7 4748386 74 - 29492121 GATAG-------------T-------------------CCGATGGTTCCCTC-------T---------GATATCCTGGTTTTGAGCCTTGGAACACCTGGCAAAGGTGAGGGACGGTGCCC i oryLat2.chr7 I 10 I 2 s gadMor1.HE568198 31524 56 + 246062 AATAC-------------C-A-----------------CCTGTAGACCACAA-------C---------ACCACCT--G--TAGACCACTAGAGTACTA---------------CTGTagac i gadMor1.HE568198 I 7 I 2 s danRer7.chr7 77255824 56 - 77276063 -ACAC-------------C-------------------AGTGTAAATCTCTG-------A---------AACACCAGTG--TAAACCTCtggaaaagta---------------aggtctga i danRer7.chr7 I 1 I 2 s petMar1.Contig1556 48846 54 + 56846 GACAC-------------C-------------------ACATGGAGACACTG-------T---------GACACCACAT--GGAG--ACTGTGACACCA---------------CATGGAG- i petMar1.Contig1556 C 0 N 0 a score=-6285.000000 s mm10.chrUn_GL456394 23941 2 + 24323 --AA s melGal1.chr3 266141 2 - 100405168 --CT i melGal1.chr3 I 14 C 0 s galGal4.chr2 96306708 2 + 148809762 --CT i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1125089 2 + 11201131 --GA i taeGut1.chr18 C 0 C 0 s chrPic1.JH584847 891414 2 + 2272089 --GA i chrPic1.JH584847 C 0 I 21 s latCha1.AFYH01275859 3287 1 - 7455 --G- i latCha1.AFYH01275859 I 14 C 0 s petMar1.Contig1031 47283 2 - 53091 CT-- i petMar1.Contig1031 N 0 C 0 e danRer7.chr7 77255880 2 - 77276063 I e gadMor1.HE568198 31580 2 + 246062 I e fr3.HE591961 84181 2 + 93265 I e gasAcu1.chrI 1143243 2 + 28185914 I e xenTro3.GL173416 399262 0 + 427269 C e oryLat2.chr7 4748460 2 - 29492121 I a score=-27481.000000 s mm10.chrUn_GL456394 23943 12 + 24323 ATGC-------GACACC------AC s dipOrd1.scaffold_44953 206 12 + 9678 CTCT-------GACCCT------GT i dipOrd1.scaffold_44953 N 0 C 0 s melGal1.chr3 266143 12 - 100405168 TGGC-------GACCCC------AG i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306710 12 + 148809762 CTGC-------AATGTC------AC i galGal4.chr2 C 0 C 0 s taeGut1.chr18 1125091 12 + 11201131 AGAC-------Ggagcc------ag i taeGut1.chr18 C 0 C 0 s xenTro3.GL173416 399262 7 + 427269 --CC-------AGCAC--------- i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 3288 12 - 7455 ATGG-------GGAACT------GC i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84183 12 + 93265 CTGA-------AACATC------CC i fr3.HE591961 I 2 I 157 s gasAcu1.chrI 1143245 12 + 28185914 CTTT-------AACACC------TC i gasAcu1.chrI I 2 I 2 s oryLat2.chr7 4748462 12 - 29492121 CTGC-------GTGTTC------CT i oryLat2.chr7 I 2 I 3 s gadMor1.HE568198 31582 18 + 246062 caac-------accacctgtagacc i gadMor1.HE568198 I 2 I 13 s danRer7.chr7 77255882 19 - 77276063 ctgctcagactaaagtc------tc i danRer7.chr7 I 2 I 27 s petMar1.Contig1031 47285 12 - 53091 CTCT-------GATACT------AC i petMar1.Contig1031 C 0 C 0 e chrPic1.JH584847 891416 21 + 2272089 I a score=-6322.000000 s mm10.chrUn_GL456394 23955 10 + 24323 AGTGTAGCAC-- s dipOrd1.scaffold_44953 218 10 + 9678 ATAGTAATGC-- i dipOrd1.scaffold_44953 C 0 I 9 s melGal1.chr3 266155 8 - 100405168 --ACTAAATC-- i melGal1.chr3 C 0 I 2 s galGal4.chr2 96306722 8 + 148809762 --AATGGggc-- i galGal4.chr2 C 0 I 2 s taeGut1.chr18 1125103 8 + 11201131 --ggctgagc-- i taeGut1.chr18 C 0 N 0 s chrPic1.JH584847 891437 7 + 2272089 --aatagCA--- i chrPic1.JH584847 I 21 C 0 s xenTro3.GL173416 399269 8 + 427269 --AGTTTAAC-- i xenTro3.GL173416 C 0 I 4 s latCha1.AFYH01275859 3300 8 - 7455 --AGTGGATC-- i latCha1.AFYH01275859 C 0 I 2 s petMar1.Contig1031 47297 10 - 53091 --AGCGGGTCTC i petMar1.Contig1031 C 0 C 0 e danRer7.chr7 77255901 27 - 77276063 I e gadMor1.HE568198 31600 13 + 246062 I e fr3.HE591961 84195 157 + 93265 I e gasAcu1.chrI 1143257 2 + 28185914 I e oryLat2.chr7 4748474 3 - 29492121 I a score=-807.000000 s mm10.chrUn_GL456394 23965 2 + 24323 TG s melGal1.chr3 266165 2 - 100405168 TA i melGal1.chr3 I 2 C 0 s galGal4.chr2 96306732 2 + 148809762 tg i galGal4.chr2 I 2 C 0 s chrPic1.JH584847 891444 2 + 2272089 TG i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399281 1 + 427269 T- i xenTro3.GL173416 I 4 I 1 s latCha1.AFYH01275859 3310 2 - 7455 TG i latCha1.AFYH01275859 I 2 C 0 s petMar1.Contig1031 47307 2 - 53091 TC i petMar1.Contig1031 C 0 C 0 e danRer7.chr7 77255901 27 - 77276063 I e gadMor1.HE568198 31600 13 + 246062 I e fr3.HE591961 84195 157 + 93265 I e gasAcu1.chrI 1143257 2 + 28185914 I e oryLat2.chr7 4748474 3 - 29492121 I e dipOrd1.scaffold_44953 228 9 + 9678 I a score=-433.000000 s mm10.chrUn_GL456394 23967 1 + 24323 T s melGal1.chr3 266167 1 - 100405168 A i melGal1.chr3 C 0 I 14 s galGal4.chr2 96306734 1 + 148809762 t i galGal4.chr2 C 0 T 641 s chrPic1.JH584847 891446 1 + 2272089 T i chrPic1.JH584847 C 0 I 14 s latCha1.AFYH01275859 3312 1 - 7455 G i latCha1.AFYH01275859 C 0 C 0 s petMar1.Contig1031 47309 1 - 53091 T i petMar1.Contig1031 C 0 I 4 e danRer7.chr7 77255901 27 - 77276063 I e gadMor1.HE568198 31600 13 + 246062 I e fr3.HE591961 84195 157 + 93265 I e gasAcu1.chrI 1143257 2 + 28185914 I e xenTro3.GL173416 399282 1 + 427269 I e oryLat2.chr7 4748474 3 - 29492121 I e dipOrd1.scaffold_44953 228 9 + 9678 I a score=-31982.000000 s mm10.chrUn_GL456394 23968 10 + 24323 TA--AGCACTGT s melGal1.chr3 266182 6 - 100405168 TT------TTGG i melGal1.chr3 I 14 C 0 s galGal4.chr2 96306094 6 + 148809762 TG------CAAT i galGal4.chr2 T 641 C 0 s chrPic1.JH584847 891461 12 + 2272089 TGGGAGGATGGG i chrPic1.JH584847 I 14 C 0 s xenTro3.GL173416 399283 10 + 427269 --TGATGGCGGC i xenTro3.GL173416 I 1 I 3 s latCha1.AFYH01275859 3313 10 - 7455 --TGCCCACTGG i latCha1.AFYH01275859 C 0 I 12 s gasAcu1.chrI 1143259 1 + 28185914 T----------- i gasAcu1.chrI I 2 I 1 s oryLat2.chr7 4748477 1 - 29492121 G----------- i oryLat2.chr7 I 3 I 1 s gadMor1.HE568198 31613 1 + 246062 t----------- i gadMor1.HE568198 I 13 I 1 s danRer7.chr7 77255928 1 - 77276063 t----------- i danRer7.chr7 I 27 I 1 s petMar1.Contig1031 47314 10 - 53091 --TAGGACCTGG i petMar1.Contig1031 I 4 C 0 e fr3.HE591961 84195 157 + 93265 I e dipOrd1.scaffold_44953 228 9 + 9678 I a score=-8162.000000 s mm10.chrUn_GL456394 23978 2 + 24323 GG- s dipOrd1.scaffold_44953 237 2 + 9678 GG- i dipOrd1.scaffold_44953 I 9 C 0 s xenTro3.GL173416 399296 2 + 427269 GC- i xenTro3.GL173416 I 3 C 0 s latCha1.AFYH01275859 3335 2 - 7455 GA- i latCha1.AFYH01275859 I 12 C 0 s gasAcu1.chrI 1143261 1 + 28185914 G-- i gasAcu1.chrI I 1 n 1 s oryLat2.chr7 4748479 1 - 29492121 G-- i oryLat2.chr7 I 1 I 13 s gadMor1.HE568198 31615 1 + 246062 g-- i gadMor1.HE568198 I 1 C 0 s danRer7.chr7 77255930 1 - 77276063 g-- i danRer7.chr7 I 1 C 0 s petMar1.Contig1031 47324 2 - 53091 -GA i petMar1.Contig1031 C 0 C 0 e melGal1.chr3 266188 0 - 100405168 C e fr3.HE591961 84195 157 + 93265 I e galGal4.chr2 96306100 0 + 148809762 C e chrPic1.JH584847 891473 0 + 2272089 C a score=1560.000000 s mm10.chrUn_GL456394 23980 1 + 24323 A s dipOrd1.scaffold_44953 239 1 + 9678 A i dipOrd1.scaffold_44953 C 0 C 0 s melGal1.chr3 266188 1 - 100405168 G i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306100 1 + 148809762 G i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 891473 1 + 2272089 G i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399298 1 + 427269 A i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 3337 1 - 7455 A i latCha1.AFYH01275859 C 0 C 0 s gadMor1.HE568198 31616 1 + 246062 a i gadMor1.HE568198 C 0 C 0 s danRer7.chr7 77255931 1 - 77276063 a i danRer7.chr7 C 0 I 22 s petMar1.Contig1031 47326 1 - 53091 A i petMar1.Contig1031 C 0 C 0 e fr3.HE591961 84195 157 + 93265 I e gasAcu1.chrI 1143262 1 + 28185914 I e oryLat2.chr7 4748480 13 - 29492121 I a score=-50212.000000 s mm10.chrUn_GL456394 23981 11 + 24323 GCACTGTGA---CA s dipOrd1.scaffold_44953 240 11 + 9678 AGACCATGC---CA i dipOrd1.scaffold_44953 C 0 N 0 s melGal1.chr3 266189 10 - 100405168 AGATCCTGG---C- i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306101 13 + 148809762 GGGCTCTGTGACC- i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 891474 10 + 2272089 AGGTTTTAT---T- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399299 8 + 427269 CTCCCATA------ i xenTro3.GL173416 C 0 C 0 s latCha1.AFYH01275859 3338 8 - 7455 CTGCAGCG------ i latCha1.AFYH01275859 C 0 C 0 s fr3.HE591961 84352 4 + 93265 TGA-A--------- i fr3.HE591961 I 157 I 1 s oryLat2.chr7 4748493 5 - 29492121 TGATA--------- i oryLat2.chr7 I 13 I 1 s gadMor1.HE568198 31617 5 + 246062 ccaca--------- i gadMor1.HE568198 C 0 I 1 s danRer7.chr7 77255954 5 - 77276063 agaca--------- i danRer7.chr7 I 22 I 1 s petMar1.Contig1031 47327 2 - 53091 --AC---------- i petMar1.Contig1031 C 0 C 0 e gasAcu1.chrI 1143262 1 + 28185914 I a score=-53444.000000 s mm10.chrUn_GL456394 23992 18 + 24323 --GCA----------CAGTAGAGAA--CTGA-----C s melGal1.chr3 266199 19 - 100405168 --TGG----------AGGTGGGAAATGCTGA------ i melGal1.chr3 C 0 C 0 s galGal4.chr2 96306114 19 + 148809762 --TCA----------CAATGGGGCACACCGA------ i galGal4.chr2 C 0 C 0 s chrPic1.JH584847 891484 24 + 2272089 --TCG----------GAGTGGAG-AGGCTAAATGGGA i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173416 399307 16 + 427269 ---CA----------TAATAAATAC--CTGA------ i xenTro3.GL173416 C 0 n 0 s latCha1.AFYH01275859 3346 19 - 7455 --GCT----------CACTGGTGCCATCTGG------ i latCha1.AFYH01275859 C 0 I 11 s fr3.HE591961 84357 20 + 93265 --CATCCCCTTCGTGCACTGAA--------------- i fr3.HE591961 I 1 C 0 s oryLat2.chr7 4748499 10 - 29492121 --CAT----------CAATGAC--------------- i oryLat2.chr7 I 1 C 0 s gadMor1.HE568198 31623 10 + 246062 --cac----------cacccag--------------- i gadMor1.HE568198 I 1 C 0 s danRer7.chr7 77255960 7 - 77276063 --aat----------gaat------------------ i danRer7.chr7 I 1 C 0 s petMar1.Contig1031 47329 12 - 53091 AGAAA----------CACTGAC--------------- i petMar1.Contig1031 C 0 C 0 e gasAcu1.chrI 1143262 1 + 28185914 I a score=1093.000000 s mm10.chrUn_GL456394 24010 1 + 24323 A s chrPic1.JH584847 891508 1 + 2272089 A i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 480974 1 + 535221 G i xenTro3.GL173343 I 863 C 0 s latCha1.AFYH01275859 3376 1 - 7455 G i latCha1.AFYH01275859 I 11 C 0 s fr3.HE591961 84377 1 + 93265 A i fr3.HE591961 C 0 n 0 s oryLat2.chr7 4748509 1 - 29492121 A i oryLat2.chr7 C 0 C 0 s gadMor1.HE568198 31633 1 + 246062 a i gadMor1.HE568198 C 0 I 6 s petMar1.Contig1031 47341 1 - 53091 A i petMar1.Contig1031 C 0 C 0 e danRer7.chr7 77255967 0 - 77276063 C e melGal1.chr3 266218 0 - 100405168 C e gasAcu1.chrI 1143262 1 + 28185914 I e galGal4.chr2 96306133 0 + 148809762 C a score=-4369.000000 s mm10.chrUn_GL456394 24011 5 + 24323 AAACA s melGal1.chr3 266218 2 - 100405168 ---AG i melGal1.chr3 C 0 C 0 s chrPic1.JH584847 891509 5 + 2272089 GAAAG i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 480975 5 + 535221 GTACA i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 3377 5 - 7455 GAACT i latCha1.AFYH01275859 C 0 C 0 s oryLat2.chr7 4748510 5 - 29492121 AAACA i oryLat2.chr7 C 0 N 0 s gadMor1.HE568198 31640 2 + 246062 ---ca i gadMor1.HE568198 I 6 I 7 s danRer7.chr7 77255967 1 - 77276063 ----a i danRer7.chr7 C 0 I 4 s petMar1.Contig1031 47342 3 - 53091 GAA-- i petMar1.Contig1031 C 0 C 0 e fr3.HE591961 84378 0 + 93265 I e gasAcu1.chrI 1143262 1 + 28185914 I e galGal4.chr2 96306133 0 + 148809762 C a score=-33643.000000 s mm10.chrUn_GL456394 24016 13 + 24323 GTG-GAG------CACCATG s melGal1.chr3 266220 14 - 100405168 GTGTGAC------CACCATG i melGal1.chr3 C 0 N 0 s galGal4.chr2 96306133 13 + 148809762 -TGCCAC------TATCGAG i galGal4.chr2 C 0 I 7 s chrPic1.JH584847 891514 3 + 2272089 GTG----------------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 480980 5 + 535221 GTGTA--------------- i xenTro3.GL173343 C 0 I 3 s latCha1.AFYH01275859 3382 2 - 7455 GC------------------ i latCha1.AFYH01275859 C 0 C 0 s gadMor1.HE568198 31649 12 + 246062 -----acac--aacaccac- i gadMor1.HE568198 I 7 C 0 s danRer7.chr7 77255972 12 - 77276063 -----gtct--gactccat- i danRer7.chr7 I 4 C 0 s petMar1.Contig1031 47345 12 - 53091 --------TGGGGCCCCAAG i petMar1.Contig1031 C 0 C 0 e fr3.HE591961 84378 0 + 93265 I e gasAcu1.chrI 1143262 1 + 28185914 I a score=-21066.000000 s mm10.chrUn_GL456394 24029 25 + 24323 ---------------ACA----AAAATTGGAACACTGGGACACT s galGal4.chr2 96306153 26 + 148809762 ---------------ACTT---CACAGTGAGGCTCTGGGACGTT i galGal4.chr2 I 7 C 0 s chrPic1.JH584847 891517 22 + 2272089 ----------------------TAGAAAAGGATGatggggggac i chrPic1.JH584847 C 0 I 12 s xenTro3.GL173343 480988 25 + 535221 ---------------AAA----GGGAATTAAACACTGGGGTACG i xenTro3.GL173343 I 3 C 0 s latCha1.AFYH01275859 3384 19 - 7455 -------------------------AGTGGCTCACTGGTGCCCC i latCha1.AFYH01275859 C 0 I 3 s gadMor1.HE568198 31661 20 + 246062 ------------------------ctgtagaccacTAGAGCACT i gadMor1.HE568198 C 0 C 0 s danRer7.chr7 77255984 20 - 77276063 ------------------------catgagcttggaggactgca i danRer7.chr7 C 0 C 0 s petMar1.Contig1031 47357 44 - 53091 ACCTGGGATCCAAAGACCTTCATAGCCTTAGACACTTGGACCCT i petMar1.Contig1031 C 0 C 0 e fr3.HE591961 84378 0 + 93265 I e gasAcu1.chrI 1143262 1 + 28185914 I a score=-4341.000000 s mm10.chrUn_GL456394 24054 8 + 24323 ACAGTGGA s galGal4.chr2 96306179 8 + 148809762 ACTATGCG i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 99447640 8 - 175225315 ACAGTAAT i taeGut1.chrUn N 0 C 0 s chrPic1.JH584847 891551 8 + 2272089 gagatggt i chrPic1.JH584847 I 12 C 0 s xenTro3.GL173343 481013 6 + 535221 --ACCCAT i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 3406 8 - 7455 GTGGCGAG i latCha1.AFYH01275859 I 3 C 0 s gadMor1.HE568198 31681 8 + 246062 ACTGTaga i gadMor1.HE568198 C 0 C 0 s danRer7.chr7 77256004 8 - 77276063 tccataca i danRer7.chr7 C 0 I 13 s petMar1.Contig1031 47401 6 - 53091 --AATAAA i petMar1.Contig1031 C 0 C 0 e fr3.HE591961 84378 0 + 93265 I e gasAcu1.chrI 1143262 1 + 28185914 I a score=-26797.000000 s mm10.chrUn_GL456394 24062 19 + 24323 ACATGATACAGCT------TGGT--GA s galGal4.chr2 96306187 20 + 148809762 GCTCTATAATGTCA-----CAGT--GC i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 99447648 19 - 175225315 ACCAGATACAGGC------CAGT--AC i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891559 20 + 2272089 AAGAGAGACAGGTG-----TAGA--GT i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 481019 21 + 535221 ACGGGATACAGTG------TAACTAAT i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 3414 25 - 7455 ATAAGGAACTGCAGCGGCTCACT--GG i latCha1.AFYH01275859 C 0 C 0 s gasAcu1.chrVI 1393864 19 - 17083675 ACATGAAGCATAT------TAGT--GA i gasAcu1.chrVI I 62 C 0 s gadMor1.HE568198 31689 19 + 246062 ccacaacaccacc------tgta--ga i gadMor1.HE568198 C 0 N 0 s danRer7.chr7 77256025 19 - 77276063 tcacatcactgat------taat--aa i danRer7.chr7 I 13 C 0 s petMar1.Contig1031 47407 8 - 53091 ACAGGATA------------------- i petMar1.Contig1031 C 0 C 0 e fr3.HE591961 84378 0 + 93265 I a score=-11579.000000 s mm10.chrUn_GL456394 24081 11 + 24323 AGAAATCTGAA s galGal4.chr2 96306207 11 + 148809762 TTCTCTCTGAT i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 99447667 11 - 175225315 GGACCATTTAC i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891579 2 + 2272089 GA--------- i chrPic1.JH584847 C 0 C 0 s xenTro3.GL173343 481040 11 + 535221 GGGAATTAAAC i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 3439 11 - 7455 TGCCATCTGGT i latCha1.AFYH01275859 C 0 C 0 s gasAcu1.chrVI 1393883 8 - 17083675 ---TGTATGGG i gasAcu1.chrVI C 0 I 24 s gadMor1.HE567384 131159 4 - 186394 -------TGAG i gadMor1.HE567384 N 0 I 19 s danRer7.chr7 77256044 11 - 77276063 agtcatctgga i danRer7.chr7 C 0 I 6 s petMar1.Contig1031 47415 5 - 53091 ------CTGGG i petMar1.Contig1031 C 0 C 0 e fr3.HE591961 84378 0 + 93265 I a score=-14141.000000 s mm10.chrUn_GL456394 24092 13 + 24323 AGCAGAGTAGAGA s galGal4.chr2 96306218 13 + 148809762 GTCAAAGTGGAGC i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 99447678 13 - 175225315 AGTACAGTAGGGA i taeGut1.chrUn C 0 C 0 s chrPic1.JH584847 891581 13 + 2272089 AGCAGGATGAAGA i chrPic1.JH584847 C 0 N 0 s xenTro3.GL173343 481051 12 + 535221 ACTGGGGTGCGA- i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 3450 13 - 7455 GTTGGAATAAGGA i latCha1.AFYH01275859 C 0 C 0 s fr3.HE593820 845 8 + 8190 AGGAGAGT----- i fr3.HE593820 I 250 I 12 s gasAcu1.chrVI 1393915 8 - 17083675 AGGGGAGT----- i gasAcu1.chrVI I 24 C 0 s gadMor1.HE567384 131182 8 - 186394 CGAAGAGC----- i gadMor1.HE567384 I 19 C 0 s danRer7.chr7 77256061 8 - 77276063 aagaaagc----- i danRer7.chr7 I 6 C 0 s petMar1.Contig1031 47420 6 - 53091 ACCATA------- i petMar1.Contig1031 C 0 C 0 a score=-28929.000000 s mm10.chrUn_GL456394 24105 11 + 24323 ACTGTCACAA----------G s galGal4.chr2 96306231 9 + 148809762 TCTCTGAT------------G i galGal4.chr2 C 0 C 0 s taeGut1.chrUn 99447691 21 - 175225315 CCAGTTATAGACCAGTACGGA i taeGut1.chrUn C 0 C 0 s xenTro3.GL173343 481063 10 + 535221 -----------CCCATACGGG i xenTro3.GL173343 C 0 C 0 s latCha1.AFYH01275859 3463 1 - 7455 --------------------A i latCha1.AFYH01275859 C 0 C 0 s gasAcu1.chrVI 1393923 10 - 17083675 -TTAAAACATG---------- i gasAcu1.chrVI C 0 I 17 s gadMor1.HE567384 131190 9 - 186394 --TGAAACACC---------- i gadMor1.HE567384 C 0 I 14 s danRer7.chr7 77256069 9 - 77276063 -cttcagcag----------- i danRer7.chr7 C 0 n 0 s petMar1.Contig1031 47426 8 - 53091 TATCCAAG------------- i petMar1.Contig1031 C 0 C 0 e fr3.HE593820 853 12 + 8190 I a score=-109229.000000 s mm10.chrUn_GL456394 24116 55 + 24323 ACAGTGGAAAACTGTGTCAG-----CAGTGTGATGCAC-----TAACACCACAGTG------GACC------------------AC-TGA s galGal4.chr2 96306240 57 + 148809762 TCACAATTGAACTCTGGCAAC---GCAATGGGACTCTT-----TGACTTCAAAATG------GGGC------------------TC-TGT i galGal4.chr2 C 0 I 438 s taeGut1.chrUn 99447712 46 - 175225315 CCAGTACGGACCAGTTGTAAC----CAGTTGGACCAGTATAAACGACTTA---------------------------------------- i taeGut1.chrUn C 0 C 0 s xenTro3.GL173343 481073 53 + 535221 GGGGGGGGGGGCAGTGTAAC-----TAATGGGA--ATT-----AAACACTGGGGTA------CGGC------------------CC-ATA i xenTro3.GL173343 C 0 I 2 s latCha1.AFYH01275859 3464 59 - 7455 CTGCAGTGGATCACTGGTGCCCC-CTGGTGGCAGGATA-----AGGAACTGCAGTG------GCTC------------------AC-TAG i latCha1.AFYH01275859 C 0 I 8 s fr3.HE593820 865 53 + 8190 -------------------------------GATAGTA-----TCGTAGCAGAGGTTGCAGCAAACGATTCAACAGCTGAGCAaac-tga i fr3.HE593820 I 12 C 0 s gasAcu1.chrVI 1393950 42 - 17083675 --------------TGAGAT----------ATACAGTA-----CAATGATACAGAGTGCATCAGAC------------------AC-TGG i gasAcu1.chrVI I 17 C 0 s gadMor1.HE567384 131213 44 - 186394 CGAAGG------GCTGAGAC----------GTACCACA-----TCGTACTACAGTG------AAGG------------------GC-TGA i gadMor1.HE567384 I 14 C 0 s danRer7.chr11 44513110 57 + 46661319 CTATGGATGCATATTAAAAAC----ACTTGGAACACCA-----TGACAGCACATTA------AAAC------------------ACTTGG i danRer7.chr11 I 768 C 0 s petMar1.Contig1031 47434 44 - 53091 ---ATCATGGACTCCAAGAACAAGATACACCAGTACCT-----TGACACCAA-------------------------------------- i petMar1.Contig1031 C 0 C 0 a score=-59095.000000 s mm10.chrUn_GL456394 24171 22 + 24323 GACAACAA-------A-----GTAGAACAG-GGTG------------------ s galGal4.chr2 96306735 22 + 148809762 gttttcag-------a-----atggGGCTC-TGTG------------------ i galGal4.chr2 I 438 C 0 s taeGut1.chrUn 99447758 22 - 175225315 -----CAG-------ACCAGTATGGAGCAG-TATG------------------ i taeGut1.chrUn C 0 N 0 s xenTro3.GL173343 481128 22 + 535221 GGATACAGTGTAACTA-----ATGGGA-------------------------- i xenTro3.GL173343 I 2 C 0 s latCha1.AFYH01275859 3531 14 - 7455 GGTGGTGG-------G-----AGGGG--------------------------- i latCha1.AFYH01275859 I 8 I 7 s fr3.HE593820 918 6 + 8190 ----------------------------aa-catt------------------ i fr3.HE593820 C 0 I 23 s gasAcu1.chrVI 1393992 7 - 17083675 ----------------------------AGTTATT------------------ i gasAcu1.chrVI C 0 I 17 s gadMor1.HE567384 131257 6 - 186394 ----------------------------AA-CACC------------------ i gadMor1.HE567384 C 0 I 5 s danRer7.chr11 44513167 6 + 46661319 ----------------------------AA-CACT------------------ i danRer7.chr11 C 0 I 13 s petMar1.Contig1031 47478 22 - 53091 -------------------------------TACACCAGGACCAAATAGATTG i petMar1.Contig1031 C 0 C 0 a score=-7382.000000 s mm10.chrUn_GL456394 24193 17 + 24323 acaccacagtg----gagcac s galGal4.chr2 96306757 17 + 148809762 ATATCACCATG----GGGCTC i galGal4.chr2 C 0 C 0 s xenTro3.GL173343 481150 17 + 535221 ATTAAACACTG----GGGTGC i xenTro3.GL173343 C 0 N 0 s latCha1.AFYH01275859 3552 17 - 7455 GCAGCTCACTG----GCGCCC i latCha1.AFYH01275859 I 7 I 3 s fr3.HE593820 947 17 + 8190 AAACAATAATG----GATGAC i fr3.HE593820 I 23 N 0 s gasAcu1.chrVI 1394016 11 - 17083675 TTTCAAAAGTG---------- i gasAcu1.chrVI I 17 C 0 s gadMor1.HE567384 131268 17 - 186394 GTACTACAGTG----AAGGGC i gadMor1.HE567384 I 5 C 0 s danRer7.chr11 44513186 17 + 46661319 AAAAACACTTG----GAACAC i danRer7.chr11 I 13 C 0 s petMar1.Contig1031 47500 21 - 53091 CTACTTTAGTACTTCGAACCC i petMar1.Contig1031 C 0 C 0 a score=-8068.000000 s mm10.chrUn_GL456394 24210 15 + 24323 tgtga---cagca----------cagta s galGal4.chr2 96306774 15 + 148809762 TGTGT---TGTCA----------CAATT i galGal4.chr2 C 0 C 0 s latCha1.AFYH01275859 3572 25 - 7455 GGTGG---CGGGAGGGGGAACTGCAGTG i latCha1.AFYH01275859 I 3 C 0 s gasAcu1.chrVI 1394027 15 - 17083675 TGTAA---TATCC----------CATGA i gasAcu1.chrVI C 0 C 0 s gadMor1.HE567384 131285 13 - 186394 TGAGA---CACCA----------CAC-- i gadMor1.HE567384 C 0 C 0 s danRer7.chr11 44513203 7 + 46661319 -----------CA----------CAGAA i danRer7.chr11 C 0 C 0 s petMar1.Contig1031 47521 18 - 53091 TGAGAAACAAGTA----------CAGTa i petMar1.Contig1031 C 0 T 302 a score=-21840.000000 s mm10.chrUn_GL456394 24225 66 + 24323 gagta----------ctgtgacaccacagtggagtaatttgacagcacagtg----------gaacactgtgaca--cca---c-tgtgtag s galGal4.chr2 96306789 66 + 148809762 GAACA----------TTCTAATGCCATAATGGGGCTCACTGACATCACAATA----------GTTCATTCTGACA--TCA---T-AATTTAG i galGal4.chr2 C 0 N 0 s latCha1.AFYH01275859 3597 69 - 7455 GGTCA----------CTGGCACCCCCTGGTGGCGGGATAAGGAACTGCAGCG----------GCTCACTGGTTCAGTTCA---CTTGTGTAG i latCha1.AFYH01275859 C 0 C 0 s gasAcu1.chrVI 1394042 74 - 17083675 ACGTATCCAGCCTTTCTAGGACTCTACGGTGGGATGTGGAAGAACTACGGTG----ACACAAATGCACTAAAACG--CAA------------ i gasAcu1.chrVI C 0 I 2 s gadMor1.HE567384 131298 67 - 186394 -CGTA------------------CTACAGTGAAGAGCTGAGACACCACATCGTACTACAGCAAAGAGCTGAAACA--CCA---C-ACCGTAC i gadMor1.HE567384 C 0 C 0 s danRer7.chr11 44513210 72 + 46661319 GCACA---------TTAAAAACACT----TGGAAGACGATAGCAGCACATTA----AAAACACTTGCTTGGAACA--CCATAAC-AGCACAC i danRer7.chr11 C 0 C 0 s petMar1.Contig1031 47237 67 - 53091 ---------GGGTCTCTCTGATACTACAGCGGGTCTCTCTGATACTACAGCG----------GGTCTCTCTGATA--CTA---C-AGCGGGT i petMar1.Contig1031 T 302 C 0 a score=-77.000000 s mm10.chrUn_GL456394 24291 8 + 24323 tactgtga s latCha1.AFYH01275859 3666 8 - 7455 TGAAGTGA i latCha1.AFYH01275859 C 0 C 0 s gadMor1.HE567384 131365 8 - 186394 TACAGCGA i gadMor1.HE567384 C 0 N 0 s danRer7.chr11 44513282 8 + 46661319 TAAAACAC i danRer7.chr11 C 0 I 5 s petMar1.Contig1031 47304 8 - 53091 CTCTCTGA i petMar1.Contig1031 C 0 C 0 e gasAcu1.chrVI 1394116 2 - 17083675 I a score=100.000000 s mm10.chrUn_GL456394 24299 1 + 24323 c s latCha1.AFYH01275859 3674 1 - 7455 C i latCha1.AFYH01275859 C 0 C 0 s gasAcu1.chrVI 1394118 1 - 17083675 G i gasAcu1.chrVI I 2 C 0 s danRer7.chr11 44513295 1 + 46661319 C i danRer7.chr11 I 5 C 0 s petMar1.Contig1031 47312 1 - 53091 C i petMar1.Contig1031 C 0 N 0 a score=-1442.000000 s mm10.chrUn_GL456394 24300 3 + 24323 agt s latCha1.AFYH01275859 3675 3 - 7455 GGT i latCha1.AFYH01275859 C 0 N 0 s gasAcu1.chrVI 1394119 1 - 17083675 G-- i gasAcu1.chrVI C 0 C 0 s danRer7.chr11 44513296 1 + 46661319 G-- i danRer7.chr11 C 0 C 0 a score=528.000000 s mm10.chrUn_GL456394 24303 10 + 24323 ccagtag---agc s gasAcu1.chrVI 1394120 10 - 17083675 CCCATAG---AGC i gasAcu1.chrVI C 0 N 0 s danRer7.chr11 44513297 13 + 46661319 GCCATAGCAAAAC i danRer7.chr11 C 0 C 0 a score=91.000000 s mm10.chrUn_GL456394 24313 1 + 24323 a s danRer7.chr11 44513310 1 + 46661319 A i danRer7.chr11 C 0 N 0