0 nestedRepeats,237 transMapEnsemblV5,669 transMapEstV5,638 transMapRefSeqV5,638 transMapRnaV5,638 transMapV5,744 uniprot,1822 0.01 cpgIslandExt,473 cpgIslandExtUnmasked,476 cpgIslandSuper,473 0.0f cpgIslandExt,449 cpgIslandExtUnmasked,452 cpgIslandSuper,449 0.1 refGene,295 0.1f cpgIslandExt,451 cpgIslandExtUnmasked,454 cpgIslandSuper,451 0.2 augustusGene,136 0.5 augustusGene,138 est,705 intronEst,786 mrna,421 transMapEnsemblV5,224 transMapEnsemblV5,358 transMapEstV5,193 transMapEstV5,327 transMapRefSeqV5,193 transMapRefSeqV5,327 transMapRnaV5,193 transMapRnaV5,327 transMapV5,299 transMapV5,433 xenoRefGene,261 0.6 cpgIslandExt,276 cpgIslandExtUnmasked,279 cpgIslandSuper,276 000 est,665 gap,138 intronEst,746 transMapV5,109 1 augustusGene,310 chainNeoSch1,399 chainNeoSch1,530 chainNeoSch1,724 chainNeoSch1,1123 chainNetNeoSch1,402 chainNetNeoSch1,533 chainNetNeoSch1,727 chainNetNeoSch1,1126 chainNetRn6,391 chainNetRn6,522 chainNetRn6,712 chainNetRn6,1111 chainRn6,388 chainRn6,519 chainRn6,709 chainRn6,1108 cpgIslandExt,245 cpgIslandExt,429 cpgIslandExt,458 cpgIslandExt,485 cpgIslandExtUnmasked,248 cpgIslandExtUnmasked,432 cpgIslandExtUnmasked,461 cpgIslandExtUnmasked,488 cpgIslandSuper,245 cpgIslandSuper,429 cpgIslandSuper,458 cpgIslandSuper,485 ensGene,200 ensGene,202 est,788 genscan,227 intronEst,872 mrna,505 netNeoSch1,399 netNeoSch1,530 netNeoSch1,724 netNeoSch1,1123 netRn6,388 netRn6,519 netRn6,709 netRn6,1108 refGene,419 transMapEnsemblV5,778 transMapEstV5,747 transMapRefSeqV5,747 transMapRnaV5,747 transMapV5,853 uniprot,1110 uniprot,1314 uniprot,1346 uniprot,1490 uniprot,1927 xenoRefGene,384 1.0 transMapEnsemblV5,366 transMapEstV5,335 transMapRefSeqV5,335 transMapRnaV5,335 transMapV5,441 10 gap,136 gap,137 uniprot,1928 100 augustusGene,134 chainNeoSch1,1091 chainNetNeoSch1,1094 chainNetRn6,1079 chainRn6,1076 microsat,70 nestedRepeats,230 netNeoSch1,1091 netRn6,1076 100.0 cpgIslandExt,474 cpgIslandExtUnmasked,477 cpgIslandSuper,474 1000 chainNeoSch1,763 chainNetNeoSch1,766 nestedRepeats,238 netNeoSch1,763 1000-2000 augustusGene,161 1000000 transMapEnsemblV5,671 transMapEstV5,640 transMapRefSeqV5,640 transMapRnaV5,640 transMapV5,746 uniprot,1824 103-7 chainNeoSch1,1124 chainNetNeoSch1,1127 chainNetRn6,1112 chainRn6,1109 netNeoSch1,1124 netRn6,1109 10607616 nestedRepeats,394 rmsk,417 10973072 nestedRepeats,361 rmsk,384 11 chainNeoSch1,720 chainNeoSch1,727 chainNetNeoSch1,723 chainNetNeoSch1,730 chainNetRn6,708 chainNetRn6,715 chainRn6,705 chainRn6,712 netNeoSch1,720 netNeoSch1,727 netRn6,705 netRn6,712 1100 chainNetRn6,729 chainNetRn6,741 chainRn6,726 chainRn6,738 netRn6,726 netRn6,738 111 chainNeoSch1,722 chainNeoSch1,728 chainNetNeoSch1,725 chainNetNeoSch1,731 chainNetRn6,710 chainNetRn6,716 chainRn6,707 chainRn6,713 netNeoSch1,722 netNeoSch1,728 netRn6,707 netRn6,713 11484-9 chainNeoSch1,1093 chainNetNeoSch1,1096 chainNetRn6,1081 chainRn6,1078 netNeoSch1,1093 netRn6,1078 115-26 chainNeoSch1,1055 chainNetNeoSch1,1058 chainNetRn6,1043 chainRn6,1040 netNeoSch1,1055 netRn6,1040 11752248 ensGene,205 117900 chainNeoSch1,744 chainNeoSch1,756 chainNetNeoSch1,747 chainNetNeoSch1,759 netNeoSch1,744 netNeoSch1,756 118300 chainNeoSch1,768 chainNetNeoSch1,771 netNeoSch1,768 11928468 chainNeoSch1,1057 chainNetNeoSch1,1060 chainNetRn6,1045 chainRn6,1042 netNeoSch1,1057 netRn6,1042 11932250 est,812 intronEst,896 mrna,529 refGene,349 xenoRefGene,314 12 est,808 intronEst,892 mrna,525 refGene,345 transMapEnsemblV5,748 transMapEnsemblV5,814 transMapEstV5,717 transMapEstV5,783 transMapRefSeqV5,717 transMapRefSeqV5,783 transMapRnaV5,717 transMapRnaV5,783 transMapV5,823 transMapV5,889 xenoRefGene,310 12111 chainNeoSch1,730 chainNetNeoSch1,733 chainNetRn6,718 chainRn6,715 netNeoSch1,730 netRn6,715 12529312 chainNeoSch1,1126 chainNetNeoSch1,1129 chainNetRn6,1114 chainRn6,1111 netNeoSch1,1126 netRn6,1111 127-163 genscan,206 13 chainNeoSch1,1122 chainNetNeoSch1,1125 chainNetRn6,1110 chainRn6,1107 netNeoSch1,1122 netRn6,1107 1300 chainNeoSch1,764 chainNetNeoSch1,767 netNeoSch1,764 134-41 windowmaskerSdust,112 1400 chainNetRn6,753 chainRn6,750 netRn6,750 14500911 chainNeoSch1,1095 chainNetNeoSch1,1098 chainNetRn6,1083 chainRn6,1080 netNeoSch1,1095 netRn6,1080 14534192 augustusGene,340 14681350 est,794 intronEst,878 mrna,511 15 microsat,30 microsat,79 microsat,130 refGene,267 simpleRepeat,90 windowmaskerSdust,109 xenoRefGene,233 15108278 uniprot,2051 152111 chainNeoSch1,733 chainNetNeoSch1,736 chainNetRn6,721 chainRn6,718 netNeoSch1,733 netRn6,718 15600 chainNetRn6,732 chainNetRn6,744 chainRn6,729 chainRn6,741 netRn6,729 netRn6,741 15608248 refGene,425 xenoRefGene,390 16 nestedRepeats,357 rmsk,380 16000 chainNetRn6,756 chainRn6,753 netRn6,753 16287941 windowmaskerSdust,114 17 cpgIslandExt,241 cpgIslandExtUnmasked,244 cpgIslandSuper,241 transMapEnsemblV5,747 transMapEstV5,716 transMapRefSeqV5,716 transMapRnaV5,716 transMapV5,822 1763-73 transMapEnsemblV5,749 transMapEstV5,718 transMapRefSeqV5,718 transMapRnaV5,718 transMapV5,824 17989246 transMapEnsemblV5,751 transMapEstV5,720 transMapRefSeqV5,720 transMapRnaV5,720 transMapV5,826 18085818 transMapEnsemblV5,817 transMapEstV5,786 transMapRefSeqV5,786 transMapRnaV5,786 transMapV5,892 18218656 augustusGene,315 transMapEnsemblV5,783 transMapEstV5,752 transMapRefSeqV5,752 transMapRnaV5,752 transMapV5,858 19 augustusGene,335 196 cpgIslandExt,619 cpgIslandExtUnmasked,622 cpgIslandSuper,619 1987 cpgIslandExt,379 cpgIslandExt,616 cpgIslandExtUnmasked,382 cpgIslandExtUnmasked,619 cpgIslandSuper,379 cpgIslandSuper,616 1996 nestedRepeats,410 rmsk,433 1996-2010 nestedRepeats,334 rmsk,357 1997 genscan,149 genscan,223 1998 genscan,167 genscan,204 1999 microsat,103 microsat,128 nestedRepeats,388 rmsk,411 simpleRepeat,65 simpleRepeat,88 2 augustusGene,142 augustusGene,337 chainNeoSch1,433 chainNeoSch1,438 chainNeoSch1,725 chainNetNeoSch1,436 chainNetNeoSch1,441 chainNetNeoSch1,728 chainNetRn6,425 chainNetRn6,430 chainNetRn6,713 chainRn6,422 chainRn6,427 chainRn6,710 cpgIslandExt,421 cpgIslandExt,426 cpgIslandExt,428 cpgIslandExt,434 cpgIslandExt,460 cpgIslandExt,475 cpgIslandExt,620 cpgIslandExtUnmasked,424 cpgIslandExtUnmasked,429 cpgIslandExtUnmasked,431 cpgIslandExtUnmasked,437 cpgIslandExtUnmasked,463 cpgIslandExtUnmasked,478 cpgIslandExtUnmasked,623 cpgIslandSuper,421 cpgIslandSuper,426 cpgIslandSuper,428 cpgIslandSuper,434 cpgIslandSuper,460 cpgIslandSuper,475 cpgIslandSuper,620 microsat,66 microsat,132 netNeoSch1,433 netNeoSch1,438 netNeoSch1,725 netRn6,422 netRn6,427 netRn6,710 simpleRepeat,92 uniprot,1121 uniprot,1331 windowmaskerSdust,111 2-3 uniprot,1572 20 chainNeoSch1,1092 chainNetNeoSch1,1095 chainNetRn6,1080 chainRn6,1077 cpgIslandExt,618 cpgIslandExtUnmasked,621 cpgIslandSuper,618 netNeoSch1,1092 netRn6,1077 transMapEnsemblV5,374 transMapEstV5,343 transMapRefSeqV5,343 transMapRnaV5,343 transMapV5,449 200 cpgIslandExt,271 cpgIslandExtUnmasked,274 cpgIslandSuper,271 2000 nestedRepeats,63 nestedRepeats,355 rmsk,99 rmsk,378 2002 chainNeoSch1,1054 chainNetNeoSch1,1057 chainNetRn6,1042 chainRn6,1039 ensGene,47 ensGene,198 est,806 intronEst,890 mrna,523 netNeoSch1,1054 netRn6,1039 refGene,343 xenoRefGene,308 2003 augustusGene,333 chainNeoSch1,1088 chainNeoSch1,1120 chainNetNeoSch1,1091 chainNetNeoSch1,1123 chainNetRn6,1076 chainNetRn6,1108 chainRn6,1073 chainRn6,1105 netNeoSch1,1088 netNeoSch1,1120 netRn6,1073 netRn6,1105 2004 est,786 intronEst,870 mrna,503 uniprot,2045 2005 refGene,417 xenoRefGene,382 2006 windowmaskerSdust,107 2007 chainNeoSch1,1027 chainNetNeoSch1,1030 chainNetRn6,1015 chainRn6,1012 gap,16 gold,18 netNeoSch1,1027 netRn6,1012 transMapEnsemblV5,745 transMapEnsemblV5,811 transMapEstV5,714 transMapEstV5,780 transMapRefSeqV5,714 transMapRefSeqV5,780 transMapRnaV5,714 transMapRnaV5,780 transMapV5,820 transMapV5,886 2008 augustusGene,308 transMapEnsemblV5,776 transMapEstV5,745 transMapRefSeqV5,745 transMapRnaV5,745 transMapV5,851 2012 uniprot,2000 2013 est,761 intronEst,845 mrna,478 2014 chainNetRn6,6 chainNetRn6,71 chainNetRn6,306 chainNetRn6Viewchain,4 chainNetRn6Viewnet,4 chainRn6,5 chainRn6,68 chainRn6,303 netRn6,5 netRn6,68 netRn6,303 refGene,384 xenoRefGene,349 2017 chainNeoSch1,9 chainNeoSch1,73 chainNeoSch1,315 chainNetNeoSch1,10 chainNetNeoSch1,76 chainNetNeoSch1,318 chainNetNeoSch1Viewchain,6 chainNetNeoSch1Viewnet,6 netNeoSch1,9 netNeoSch1,73 netNeoSch1,315 2022_03 uniprot,1911 2023 uniprot,1191 2111 chainNeoSch1,729 chainNetNeoSch1,732 chainNetRn6,717 chainRn6,714 netNeoSch1,729 netRn6,714 217900 chainNeoSch1,745 chainNeoSch1,757 chainNetNeoSch1,748 chainNetNeoSch1,760 netNeoSch1,745 netNeoSch1,757 218300 chainNeoSch1,769 chainNetNeoSch1,772 netNeoSch1,769 22 windowmaskerSdust,110 22102590 uniprot,2007 225 transMapEnsemblV5,716 transMapEstV5,685 transMapRefSeqV5,685 transMapRnaV5,685 transMapV5,791 22900 chainNeoSch1,742 chainNeoSch1,754 chainNetNeoSch1,745 chainNetNeoSch1,757 netNeoSch1,742 netNeoSch1,754 23 uniprot,2047 23193287 est,768 intronEst,852 mrna,485 23300 chainNeoSch1,766 chainNetNeoSch1,769 netNeoSch1,766 24 augustusGene,311 transMapEnsemblV5,779 transMapEstV5,748 transMapRefSeqV5,748 transMapRnaV5,748 transMapV5,854 24259432 refGene,391 xenoRefGene,356 243 gap,132 25 genscan,225 transMapV5,112 xenoRefGene,268 252111 chainNeoSch1,734 chainNetNeoSch1,737 chainNetRn6,722 chainRn6,719 netNeoSch1,734 netRn6,719 261-82 cpgIslandExt,621 cpgIslandExtUnmasked,624 cpgIslandSuper,621 268 genscan,226 27 microsat,131 simpleRepeat,91 2900 chainNeoSch1,741 chainNeoSch1,753 chainNetNeoSch1,744 chainNetNeoSch1,756 netNeoSch1,741 netNeoSch1,753 2n cpgIslandExt,487 cpgIslandExtUnmasked,490 cpgIslandSuper,487 3 augustusGene,140 chainNeoSch1,445 chainNeoSch1,726 chainNetNeoSch1,448 chainNetNeoSch1,729 chainNetRn6,437 chainNetRn6,714 chainRn6,434 chainRn6,711 cpgIslandExt,432 cpgIslandExt,462 cpgIslandExtUnmasked,435 cpgIslandExtUnmasked,465 cpgIslandSuper,432 cpgIslandSuper,462 est,478 est,531 est,585 intronEst,112 intronEst,559 intronEst,612 intronEst,666 microsat,68 netNeoSch1,445 netNeoSch1,726 netRn6,434 netRn6,711 transMapEnsemblV5,813 transMapEstV5,782 transMapRefSeqV5,782 transMapRnaV5,782 transMapV5,888 uniprot,1123 uniprot,1194 3.1 augustusGene,24 30 chainNeoSch1,1090 chainNetNeoSch1,1093 chainNetRn6,1078 chainRn6,1075 ensGene,201 netNeoSch1,1090 netRn6,1075 300 cpgIslandExt,6 cpgIslandExtUnmasked,9 cpgIslandSuper,6 3000 chainNeoSch1,698 chainNetNeoSch1,701 netNeoSch1,698 31600 chainNetRn6,733 chainNetRn6,745 chainRn6,730 chainRn6,742 netRn6,730 netRn6,742 317900 chainNeoSch1,746 chainNeoSch1,758 chainNetNeoSch1,749 chainNetNeoSch1,761 netNeoSch1,746 netNeoSch1,758 318300 chainNeoSch1,770 chainNetNeoSch1,773 netNeoSch1,770 32 est,789 intronEst,82 intronEst,873 mrna,506 32000 chainNetRn6,757 chainRn6,754 netRn6,754 32111 chainNeoSch1,731 chainNetNeoSch1,734 chainNetRn6,719 chainRn6,716 netNeoSch1,731 netRn6,716 325 chainNetRn6,724 chainNetRn6,736 chainRn6,721 chainRn6,733 netRn6,721 netRn6,733 33 refGene,420 xenoRefGene,385 3300 chainNeoSch1,765 chainNetNeoSch1,768 netNeoSch1,765 348 gold,153 350 chainNeoSch1,736 chainNeoSch1,748 chainNetNeoSch1,739 chainNetNeoSch1,751 netNeoSch1,736 netNeoSch1,748 360 chainNetRn6,725 chainNetRn6,737 chainRn6,722 chainRn6,734 netRn6,722 netRn6,734 3600 chainNetRn6,730 chainNetRn6,742 chainRn6,727 chainRn6,739 netRn6,727 netRn6,739 3656447 cpgIslandExt,623 cpgIslandExtUnmasked,626 cpgIslandSuper,623 38-41 ensGene,203 39s ensGene,163 4 est,809 intronEst,893 mrna,526 refGene,346 xenoRefGene,311 40 uniprot,2002 400 chainNetRn6,726 chainNetRn6,738 chainRn6,723 chainRn6,735 netRn6,723 netRn6,735 transMapV5,108 4000 chainNetRn6,754 chainRn6,751 netRn6,751 41 est,763 intronEst,847 mrna,480 418-420 nestedRepeats,359 rmsk,382 42 refGene,386 xenoRefGene,351 425 chainNeoSch1,737 chainNeoSch1,749 chainNetNeoSch1,740 chainNetNeoSch1,752 netNeoSch1,737 netNeoSch1,749 445 gold,152 450 chainNeoSch1,738 chainNeoSch1,750 chainNetNeoSch1,741 chainNetNeoSch1,753 chainNetRn6,727 chainNetRn6,739 chainRn6,724 chainRn6,736 netNeoSch1,738 netNeoSch1,750 netRn6,724 netRn6,736 464-70 uniprot,2049 5 augustusGene,312 cpgIslandExt,464 cpgIslandExtUnmasked,467 cpgIslandSuper,464 est,475 est,516 est,542 intronEst,556 intronEst,597 intronEst,623 transMapEnsemblV5,9 transMapEnsemblV5,780 transMapEstV5,7 transMapEstV5,749 transMapRefSeqV5,8 transMapRefSeqV5,749 transMapRnaV5,8 transMapRnaV5,749 transMapV5,6 transMapV5,855 uniprot,2048 5-base gc5BaseBw,6 gc5BaseBw,27 50 cpgIslandExt,265 cpgIslandExtUnmasked,268 cpgIslandSuper,265 nestedRepeats,229 500 est,32 intronEst,44 5000 chainNetRn6,686 chainRn6,683 netRn6,683 56600 chainNetRn6,734 chainNetRn6,746 chainRn6,731 chainRn6,743 netRn6,731 netRn6,743 57000 chainNetRn6,758 chainRn6,755 netRn6,755 573-80 microsat,133 simpleRepeat,93 57900 chainNeoSch1,743 chainNeoSch1,755 chainNetNeoSch1,746 chainNetNeoSch1,758 netNeoSch1,743 netNeoSch1,755 58300 chainNeoSch1,767 chainNetNeoSch1,770 netNeoSch1,767 6 cpgIslandExt,466 cpgIslandExt,469 cpgIslandExt,477 cpgIslandExtUnmasked,469 cpgIslandExtUnmasked,472 cpgIslandExtUnmasked,480 cpgIslandSuper,466 cpgIslandSuper,469 cpgIslandSuper,477 nestedRepeats,391 nestedRepeats,412 nestedRepeats,413 rmsk,414 rmsk,435 rmsk,436 6.0 chainNetRn6,8 chainNetRn6,73 chainNetRn6,308 chainNetRn6Viewchain,6 chainNetRn6Viewnet,6 chainRn6,7 chainRn6,70 chainRn6,305 netRn6,7 netRn6,70 netRn6,305 600 chainNeoSch1,739 chainNeoSch1,751 chainNetNeoSch1,742 chainNetNeoSch1,754 chainNetRn6,728 chainNetRn6,740 chainRn6,725 chainRn6,737 netNeoSch1,739 netNeoSch1,751 netRn6,725 netRn6,737 625 chainNetRn6,748 chainRn6,745 netRn6,745 637-44 augustusGene,313 transMapEnsemblV5,781 transMapEstV5,750 transMapRefSeqV5,750 transMapRnaV5,750 transMapV5,856 656-64 est,810 intronEst,894 mrna,527 refGene,347 xenoRefGene,312 657-63 nestedRepeats,392 rmsk,415 660 chainNetRn6,749 chainRn6,746 netRn6,746 7 cpgIslandExt,472 cpgIslandExt,480 cpgIslandExtUnmasked,475 cpgIslandExtUnmasked,483 cpgIslandSuper,472 cpgIslandSuper,480 700 chainNetRn6,750 chainRn6,747 netRn6,747 72111 chainNeoSch1,732 chainNetNeoSch1,735 chainNetRn6,720 chainRn6,717 netNeoSch1,732 netRn6,717 743-8 nestedRepeats,414 rmsk,437 750 chainNeoSch1,760 chainNetNeoSch1,763 chainNetRn6,751 chainRn6,748 est,664 intronEst,745 netNeoSch1,760 netRn6,748 7600 chainNetRn6,731 chainNetRn6,743 chainRn6,728 chainRn6,740 netRn6,728 netRn6,740 78-94 genscan,228 8000 chainNetRn6,755 chainRn6,752 netRn6,752 825 chainNeoSch1,761 chainNetNeoSch1,764 netNeoSch1,761 832 gap,133 850 chainNeoSch1,762 chainNetNeoSch1,765 netNeoSch1,762 8994846 nestedRepeats,416 rmsk,439 9 cpgIslandExt,482 cpgIslandExtUnmasked,485 cpgIslandSuper,482 nestedRepeats,358 nestedRepeats,390 rmsk,381 rmsk,413 900 chainNeoSch1,740 chainNeoSch1,752 chainNetNeoSch1,743 chainNetNeoSch1,755 chainNetRn6,752 chainRn6,749 netNeoSch1,740 netNeoSch1,752 netRn6,749 9149143 genscan,230 93 uniprot,1483 96 est,712 intronEst,793 mrna,428 refGene,302 9862982 microsat,135 simpleRepeat,95 _alt uniprot,1419 _fix uniprot,1421 a augustusGene,116 augustusGene,128 augustusGene,152 augustusGene,215 augustusGene,218 augustusGene,233 augustusGene,323 augustusGene,328 chainNeoSch1,81 chainNeoSch1,152 chainNeoSch1,206 chainNeoSch1,465 chainNeoSch1,475 chainNeoSch1,479 chainNeoSch1,546 chainNeoSch1,563 chainNeoSch1,566 chainNeoSch1,634 chainNeoSch1,641 chainNeoSch1,646 chainNeoSch1,650 chainNeoSch1,661 chainNeoSch1,693 chainNeoSch1,812 chainNeoSch1,826 chainNeoSch1,832 chainNeoSch1,838 chainNeoSch1,842 chainNeoSch1,845 chainNeoSch1,873 chainNeoSch1,1063 chainNeoSch1,1087 chainNeoSch1,1103 chainNetNeoSch1,84 chainNetNeoSch1,155 chainNetNeoSch1,209 chainNetNeoSch1,468 chainNetNeoSch1,478 chainNetNeoSch1,482 chainNetNeoSch1,549 chainNetNeoSch1,566 chainNetNeoSch1,569 chainNetNeoSch1,637 chainNetNeoSch1,644 chainNetNeoSch1,649 chainNetNeoSch1,653 chainNetNeoSch1,664 chainNetNeoSch1,696 chainNetNeoSch1,815 chainNetNeoSch1,829 chainNetNeoSch1,835 chainNetNeoSch1,841 chainNetNeoSch1,845 chainNetNeoSch1,848 chainNetNeoSch1,876 chainNetNeoSch1,1066 chainNetNeoSch1,1090 chainNetNeoSch1,1106 chainNetRn6,80 chainNetRn6,149 chainNetRn6,201 chainNetRn6,457 chainNetRn6,467 chainNetRn6,471 chainNetRn6,538 chainNetRn6,555 chainNetRn6,558 chainNetRn6,624 chainNetRn6,629 chainNetRn6,634 chainNetRn6,638 chainNetRn6,649 chainNetRn6,681 chainNetRn6,800 chainNetRn6,814 chainNetRn6,820 chainNetRn6,826 chainNetRn6,830 chainNetRn6,833 chainNetRn6,861 chainNetRn6,1051 chainNetRn6,1075 chainNetRn6,1091 chainRn6,77 chainRn6,146 chainRn6,198 chainRn6,454 chainRn6,464 chainRn6,468 chainRn6,535 chainRn6,552 chainRn6,555 chainRn6,621 chainRn6,626 chainRn6,631 chainRn6,635 chainRn6,646 chainRn6,678 chainRn6,797 chainRn6,811 chainRn6,817 chainRn6,823 chainRn6,827 chainRn6,830 chainRn6,858 chainRn6,1048 chainRn6,1072 chainRn6,1088 cpgIslandExt,43 cpgIslandExt,50 cpgIslandExt,54 cpgIslandExt,128 cpgIslandExt,166 cpgIslandExt,236 cpgIslandExt,590 cpgIslandExt,593 cpgIslandExtUnmasked,46 cpgIslandExtUnmasked,53 cpgIslandExtUnmasked,57 cpgIslandExtUnmasked,131 cpgIslandExtUnmasked,169 cpgIslandExtUnmasked,239 cpgIslandExtUnmasked,593 cpgIslandExtUnmasked,596 cpgIslandSuper,43 cpgIslandSuper,50 cpgIslandSuper,54 cpgIslandSuper,128 cpgIslandSuper,166 cpgIslandSuper,236 cpgIslandSuper,590 cpgIslandSuper,593 ensGene,31 est,115 est,132 est,167 est,193 est,266 est,385 est,465 est,469 est,595 est,621 est,629 est,681 est,700 gap,99 gap,103 gc5BaseBw,44 genscan,102 genscan,132 gold,117 gold,123 intronEst,115 intronEst,148 intronEst,196 intronEst,213 intronEst,248 intronEst,274 intronEst,347 intronEst,466 intronEst,546 intronEst,550 intronEst,676 intronEst,702 intronEst,710 intronEst,762 intronEst,781 microsat,53 microsat,119 mrna,61 mrna,78 mrna,113 mrna,139 mrna,212 mrna,331 mrna,397 mrna,416 nestedRepeats,177 nestedRepeats,226 nestedRepeats,344 nestedRepeats,363 netNeoSch1,81 netNeoSch1,152 netNeoSch1,206 netNeoSch1,465 netNeoSch1,475 netNeoSch1,479 netNeoSch1,546 netNeoSch1,563 netNeoSch1,566 netNeoSch1,634 netNeoSch1,641 netNeoSch1,646 netNeoSch1,650 netNeoSch1,661 netNeoSch1,693 netNeoSch1,812 netNeoSch1,826 netNeoSch1,832 netNeoSch1,838 netNeoSch1,842 netNeoSch1,845 netNeoSch1,873 netNeoSch1,1063 netNeoSch1,1087 netNeoSch1,1103 netRn6,77 netRn6,146 netRn6,198 netRn6,454 netRn6,464 netRn6,468 netRn6,535 netRn6,552 netRn6,555 netRn6,621 netRn6,626 netRn6,631 netRn6,635 netRn6,646 netRn6,678 netRn6,797 netRn6,811 netRn6,817 netRn6,823 netRn6,827 netRn6,830 netRn6,858 netRn6,1048 netRn6,1072 netRn6,1088 refGene,271 refGene,290 refGene,361 refGene,404 rmsk,36 rmsk,56 rmsk,226 rmsk,240 rmsk,367 rmsk,386 simpleRepeat,79 transMapEnsemblV5,83 transMapEnsemblV5,115 transMapEnsemblV5,205 transMapEnsemblV5,318 transMapEnsemblV5,353 transMapEnsemblV5,397 transMapEnsemblV5,423 transMapEnsemblV5,476 transMapEnsemblV5,546 transMapEnsemblV5,625 transMapEnsemblV5,653 transMapEnsemblV5,712 transMapEstV5,52 transMapEstV5,84 transMapEstV5,174 transMapEstV5,287 transMapEstV5,322 transMapEstV5,366 transMapEstV5,392 transMapEstV5,445 transMapEstV5,515 transMapEstV5,594 transMapEstV5,622 transMapEstV5,681 transMapRefSeqV5,52 transMapRefSeqV5,84 transMapRefSeqV5,174 transMapRefSeqV5,287 transMapRefSeqV5,322 transMapRefSeqV5,366 transMapRefSeqV5,392 transMapRefSeqV5,445 transMapRefSeqV5,515 transMapRefSeqV5,594 transMapRefSeqV5,622 transMapRefSeqV5,681 transMapRnaV5,52 transMapRnaV5,84 transMapRnaV5,174 transMapRnaV5,287 transMapRnaV5,322 transMapRnaV5,366 transMapRnaV5,392 transMapRnaV5,445 transMapRnaV5,515 transMapRnaV5,594 transMapRnaV5,622 transMapRnaV5,681 transMapV5,53 transMapV5,190 transMapV5,280 transMapV5,393 transMapV5,428 transMapV5,472 transMapV5,498 transMapV5,551 transMapV5,621 transMapV5,700 transMapV5,728 transMapV5,787 uniprot,140 uniprot,311 uniprot,418 uniprot,459 uniprot,480 uniprot,490 uniprot,523 uniprot,603 uniprot,622 uniprot,708 uniprot,740 uniprot,759 uniprot,805 uniprot,965 uniprot,976 uniprot,988 uniprot,1001 uniprot,1048 uniprot,1071 uniprot,1152 uniprot,1164 uniprot,1179 uniprot,1217 uniprot,1226 uniprot,1234 uniprot,1239 uniprot,1286 uniprot,1458 uniprot,1599 uniprot,1634 uniprot,1735 uniprot,1779 uniprot,1807 uniprot,1922 uniprot,1949 uniprot,2017 uniprot,2023 uniprot,2032 windowmaskerSdust,91 xenoRefGene,237 xenoRefGene,256 xenoRefGene,326 xenoRefGene,369 a91-114-31-123 chainNeoSch1,686 chainNetNeoSch1,689 netNeoSch1,686 a91-90-25-100 chainNetRn6,674 chainRn6,671 netRn6,671 aa unipModif,1 windowmaskerSdust,97 ab augustusGene,3 augustusGene,16 abbreviated chainNeoSch1,597 chainNetNeoSch1,600 chainNetRn6,587 chainRn6,584 netNeoSch1,597 netRn6,584 about chainNeoSch1,471 chainNeoSch1,484 chainNeoSch1,862 chainNetNeoSch1,474 chainNetNeoSch1,487 chainNetNeoSch1,865 chainNetRn6,463 chainNetRn6,476 chainNetRn6,850 chainRn6,460 chainRn6,473 chainRn6,847 est,31 est,411 gap,35 genscan,127 gold,37 intronEst,43 intronEst,492 microsat,98 mrna,348 netNeoSch1,471 netNeoSch1,484 netNeoSch1,862 netRn6,460 netRn6,473 netRn6,847 refGene,210 simpleRepeat,59 transMapEnsemblV5,132 transMapEstV5,101 transMapRefSeqV5,101 transMapRnaV5,101 transMapV5,207 xenoRefGene,176 above chainNeoSch1,543 chainNeoSch1,555 chainNeoSch1,575 chainNetNeoSch1,546 chainNetNeoSch1,558 chainNetNeoSch1,578 chainNetRn6,535 chainNetRn6,547 chainNetRn6,567 chainRn6,532 chainRn6,544 chainRn6,564 nestedRepeats,218 netNeoSch1,543 netNeoSch1,555 netNeoSch1,575 netRn6,532 netRn6,544 netRn6,564 uniprot,1525 abundance chainNeoSch1,188 chainNetNeoSch1,191 chainNetRn6,183 chainRn6,180 netNeoSch1,188 netRn6,180 acad chainNeoSch1,1083 chainNetNeoSch1,1086 chainNetRn6,1071 chainRn6,1068 netNeoSch1,1083 netRn6,1068 acceptor genscan,32 access cpgIslandExt,505 cpgIslandExtUnmasked,508 cpgIslandSuper,505 ensGene,56 ensGene,100 transMapEnsemblV5,516 transMapEnsemblV5,575 transMapEstV5,485 transMapEstV5,544 transMapRefSeqV5,485 transMapRefSeqV5,544 transMapRnaV5,485 transMapRnaV5,544 transMapV5,591 transMapV5,650 uniprot,896 uniprot,1706 uniprot,1838 accessed transMapEnsemblV5,525 transMapEstV5,494 transMapRefSeqV5,494 transMapRnaV5,494 transMapV5,600 accessing transMapEnsemblV5,568 transMapEstV5,537 transMapRefSeqV5,537 transMapRnaV5,537 transMapV5,643 accession refGene,150 refGene,162 ucscToINSDC,2 ucscToINSDC,23 xenoRefGene,116 xenoRefGene,128 accession.version-srcuniq.destuniq transMapEnsemblV5,419 transMapEstV5,388 transMapRefSeqV5,388 transMapRnaV5,388 transMapV5,494 accessions transMapEnsemblV5,391 transMapEstV5,360 transMapRefSeqV5,360 transMapRnaV5,360 transMapV5,466 according augustusGene,114 cpgIslandExt,370 cpgIslandExtUnmasked,373 cpgIslandSuper,370 nestedRepeats,183 acgt chainNeoSch1,685 chainNetNeoSch1,688 chainNetRn6,673 chainRn6,670 netNeoSch1,685 netRn6,670 acid unipModif,5 unipMut,4 uniprot,339 uniprot,351 acids ensGene,196 est,759 est,784 intronEst,843 intronEst,868 microsat,126 mrna,476 mrna,501 refGene,382 refGene,415 simpleRepeat,86 uniprot,620 uniprot,1998 xenoRefGene,347 xenoRefGene,380 acronym uniprot,546 added chainNeoSch1,607 chainNetNeoSch1,610 chainNetRn6,597 chainRn6,594 nestedRepeats,147 netNeoSch1,607 netRn6,594 transMapEnsemblV5,425 transMapEnsemblV5,435 transMapEstV5,394 transMapEstV5,404 transMapRefSeqV5,394 transMapRefSeqV5,404 transMapRnaV5,394 transMapRnaV5,404 transMapV5,500 transMapV5,510 uniprot,1187 additional nestedRepeats,288 rmsk,295 additions refGene,53 admin cpgIslandExt,577 cpgIslandExtUnmasked,580 cpgIslandSuper,577 uniprot,1917 advice chainNeoSch1,948 chainNeoSch1,980 chainNetNeoSch1,951 chainNetNeoSch1,983 chainNetRn6,936 chainNetRn6,968 chainRn6,933 chainRn6,965 netNeoSch1,948 netNeoSch1,980 netRn6,933 netRn6,965 af nestedRepeats,372 nestedRepeats,396 rmsk,395 rmsk,419 afa nestedRepeats,325 rmsk,348 affine chainNeoSch1,91 chainNetNeoSch1,94 chainNetRn6,90 chainRn6,87 netNeoSch1,91 netRn6,87 after chainNeoSch1,920 chainNetNeoSch1,923 chainNetRn6,908 chainRn6,905 cpgIslandExt,94 cpgIslandExt,326 cpgIslandExtUnmasked,97 cpgIslandExtUnmasked,329 cpgIslandSuper,94 cpgIslandSuper,326 netNeoSch1,920 netRn6,905 uniprot,294 uniprot,1329 ag intronEst,89 again transMapEnsemblV5,407 transMapEstV5,376 transMapRefSeqV5,376 transMapRnaV5,376 transMapV5,482 uniprot,629 uniprot,1500 against est,649 intronEst,35 intronEst,730 mrna,341 mrna,389 refGene,254 transMapEnsemblV5,125 transMapEstV5,94 transMapRefSeqV5,94 transMapRnaV5,94 transMapV5,200 xenoRefGene,220 agarwala windowmaskerSdust,98 agp gap,49 gap,58 gap,65 gold,48 gold,57 gold,64 aids cpgIslandExt,86 cpgIslandExtUnmasked,89 cpgIslandSuper,86 al cpgIslandExt,378 cpgIslandExtUnmasked,381 cpgIslandSuper,378 ensGene,46 ensGene,189 refGene,373 transMapEnsemblV5,733 transMapEstV5,702 transMapRefSeqV5,702 transMapRnaV5,702 transMapV5,808 xenoRefGene,338 alejo uniprot,1966 algorithm augustusGene,130 transMapEnsemblV5,28 transMapEstV5,26 transMapRefSeqV5,26 transMapRnaV5,26 transMapV5,25 algorithms uniprot,52 align chainNeoSch1,204 chainNetNeoSch1,207 chainNetRn6,199 chainRn6,196 est,679 intronEst,760 netNeoSch1,204 netRn6,196 uniprot,1216 alignable chainNeoSch1,26 chainNeoSch1,42 chainNetNeoSch1,29 chainNetNeoSch1,45 chainNetRn6,26 chainNetRn6,42 chainRn6,23 chainRn6,39 netNeoSch1,26 netNeoSch1,42 netRn6,23 netRn6,39 aligned chainNeoSch1,600 chainNetNeoSch1,603 chainNetRn6,590 chainRn6,587 est,648 est,684 intronEst,34 intronEst,152 intronEst,729 intronEst,765 mrna,388 mrna,400 netNeoSch1,600 netRn6,587 refGene,253 refGene,274 transMapV5,116 uniprot,783 uniprot,973 uniprot,1007 uniprot,1246 uniprot,1335 uniprot,1472 xenoRefGene,219 xenoRefGene,240 aligning chainNeoSch1,141 chainNeoSch1,343 chainNeoSch1,373 chainNetNeoSch1,144 chainNetNeoSch1,346 chainNetNeoSch1,376 chainNetRn6,138 chainNetRn6,335 chainNetRn6,365 chainRn6,135 chainRn6,332 chainRn6,362 est,397 intronEst,478 netNeoSch1,141 netNeoSch1,343 netNeoSch1,373 netRn6,135 netRn6,332 netRn6,362 uniprot,952 alignment chainNeoSch1,267 chainNeoSch1,1030 chainNetNeoSch1,270 chainNetNeoSch1,1033 chainNetRn6,262 chainNetRn6,1018 chainRn6,259 chainRn6,1015 est,55 est,420 est,426 est,438 est,689 est,802 intronEst,76 intronEst,139 intronEst,501 intronEst,507 intronEst,519 intronEst,770 intronEst,886 mrna,36 mrna,359 mrna,365 mrna,377 mrna,405 mrna,519 netNeoSch1,12 netNeoSch1,267 netNeoSch1,1030 netRn6,9 netRn6,259 netRn6,1015 refGene,263 refGene,279 refGene,339 transMapEnsemblV5,27 transMapEnsemblV5,79 transMapEnsemblV5,103 transMapEnsemblV5,140 transMapEnsemblV5,196 transMapEnsemblV5,209 transMapEnsemblV5,387 transMapEnsemblV5,430 transMapEstV5,25 transMapEstV5,48 transMapEstV5,72 transMapEstV5,109 transMapEstV5,165 transMapEstV5,178 transMapEstV5,356 transMapEstV5,399 transMapRefSeqV5,25 transMapRefSeqV5,48 transMapRefSeqV5,72 transMapRefSeqV5,109 transMapRefSeqV5,165 transMapRefSeqV5,178 transMapRefSeqV5,356 transMapRefSeqV5,399 transMapRnaV5,25 transMapRnaV5,48 transMapRnaV5,72 transMapRnaV5,109 transMapRnaV5,165 transMapRnaV5,178 transMapRnaV5,356 transMapRnaV5,399 transMapV5,24 transMapV5,49 transMapV5,178 transMapV5,215 transMapV5,271 transMapV5,284 transMapV5,462 transMapV5,505 unipAliSwissprot,4 unipAliTrembl,4 uniprot,108 uniprot,135 uniprot,191 uniprot,807 uniprot,914 uniprot,1175 uniprot,1429 uniprot,1523 uniprot,1620 uniprot,1629 uniprot,1636 uniprot,1642 uniprot,1704 uniprot,1862 xenoRefGene,229 xenoRefGene,245 xenoRefGene,304 alignments augustusGene,300 chainNeoSch1,13 chainNeoSch1,67 chainNeoSch1,458 chainNeoSch1,612 chainNeoSch1,624 chainNeoSch1,632 chainNeoSch1,660 chainNeoSch1,778 chainNeoSch1,1050 chainNeoSch1,1115 chainNetNeoSch1,16 chainNetNeoSch1,70 chainNetNeoSch1,461 chainNetNeoSch1,615 chainNetNeoSch1,627 chainNetNeoSch1,635 chainNetNeoSch1,663 chainNetNeoSch1,781 chainNetNeoSch1,1053 chainNetNeoSch1,1118 chainNetNeoSch1Viewchain,12 chainNetNeoSch1Viewnet,12 chainNetRn6,13 chainNetRn6,67 chainNetRn6,450 chainNetRn6,602 chainNetRn6,614 chainNetRn6,622 chainNetRn6,648 chainNetRn6,766 chainNetRn6,1038 chainNetRn6,1103 chainNetRn6Viewchain,11 chainNetRn6Viewnet,11 chainRn6,10 chainRn6,64 chainRn6,447 chainRn6,599 chainRn6,611 chainRn6,619 chainRn6,645 chainRn6,763 chainRn6,1035 chainRn6,1100 est,14 est,698 intronEst,16 intronEst,779 mrna,15 mrna,414 netNeoSch1,67 netNeoSch1,458 netNeoSch1,612 netNeoSch1,624 netNeoSch1,632 netNeoSch1,660 netNeoSch1,778 netNeoSch1,1050 netNeoSch1,1115 netRn6,64 netRn6,447 netRn6,599 netRn6,611 netRn6,619 netRn6,645 netRn6,763 netRn6,1035 netRn6,1100 refGene,288 rmsk,306 transMapEnsemblV5,21 transMapEnsemblV5,72 transMapEnsemblV5,154 transMapEnsemblV5,167 transMapEnsemblV5,325 transMapEnsemblV5,337 transMapEnsemblV5,347 transMapEnsemblV5,370 transMapEnsemblV5,441 transMapEnsemblV5,453 transMapEnsemblV5,768 transMapEstV5,19 transMapEstV5,41 transMapEstV5,123 transMapEstV5,136 transMapEstV5,294 transMapEstV5,306 transMapEstV5,316 transMapEstV5,339 transMapEstV5,410 transMapEstV5,422 transMapEstV5,737 transMapRefSeqV5,19 transMapRefSeqV5,41 transMapRefSeqV5,123 transMapRefSeqV5,136 transMapRefSeqV5,294 transMapRefSeqV5,306 transMapRefSeqV5,316 transMapRefSeqV5,339 transMapRefSeqV5,410 transMapRefSeqV5,422 transMapRefSeqV5,737 transMapRnaV5,19 transMapRnaV5,41 transMapRnaV5,123 transMapRnaV5,136 transMapRnaV5,294 transMapRnaV5,306 transMapRnaV5,316 transMapRnaV5,339 transMapRnaV5,410 transMapRnaV5,422 transMapRnaV5,737 transMapV5,4 transMapV5,18 transMapV5,40 transMapV5,67 transMapV5,85 transMapV5,127 transMapV5,140 transMapV5,229 transMapV5,242 transMapV5,400 transMapV5,412 transMapV5,422 transMapV5,445 transMapV5,516 transMapV5,528 transMapV5,843 uniprot,82 uniprot,100 uniprot,637 uniprot,793 uniprot,814 uniprot,876 uniprot,1138 uniprot,1148 uniprot,1161 uniprot,1309 uniprot,1410 uniprot,1487 xenoRefGene,254 aligns transMapV5,162 all augustusGene,207 chainNeoSch1,631 chainNetNeoSch1,634 chainNetRn6,621 chainRn6,618 cpgIslandExt,327 cpgIslandExt,527 cpgIslandExtUnmasked,6 cpgIslandExtUnmasked,330 cpgIslandExtUnmasked,530 cpgIslandSuper,327 cpgIslandSuper,527 est,189 est,243 est,298 est,393 est,485 intronEst,118 intronEst,270 intronEst,324 intronEst,379 intronEst,474 intronEst,566 mrna,135 mrna,189 mrna,244 nestedRepeats,138 nestedRepeats,170 netNeoSch1,631 netRn6,618 rmsk,65 transMapEnsemblV5,190 transMapEstV5,159 transMapRefSeqV5,159 transMapRnaV5,159 transMapV5,265 uniprot,89 uniprot,121 uniprot,204 uniprot,395 uniprot,956 uniprot,1107 uniprot,1167 uniprot,1311 uniprot,1337 uniprot,1343 uniprot,1418 uniprot,1542 uniprot,1685 uniprot,1979 allowed est,660 intronEst,741 allows augustusGene,168 chainNeoSch1,86 chainNetNeoSch1,89 chainNetRn6,85 chainRn6,82 est,388 intronEst,469 mrna,334 netNeoSch1,86 netRn6,82 refGene,181 transMapEnsemblV5,118 transMapEnsemblV5,287 transMapEstV5,87 transMapEstV5,256 transMapRefSeqV5,87 transMapRefSeqV5,256 transMapRnaV5,87 transMapRnaV5,256 transMapV5,193 transMapV5,362 xenoRefGene,147 aln unipAliSwissprot,2 unipAliTrembl,2 alone augustusGene,33 along transMapEnsemblV5,181 transMapEstV5,150 transMapRefSeqV5,150 transMapRnaV5,150 transMapV5,256 already chainNeoSch1,823 chainNetNeoSch1,826 chainNetRn6,811 chainRn6,808 netNeoSch1,823 netRn6,808 also chainNeoSch1,97 chainNetNeoSch1,100 chainNetRn6,96 chainRn6,93 cpgIslandExt,531 cpgIslandExtUnmasked,534 cpgIslandSuper,531 ensGene,48 est,270 est,378 est,429 est,598 gap,31 gold,33 intronEst,351 intronEst,459 intronEst,510 intronEst,679 mrna,216 mrna,324 mrna,368 netNeoSch1,97 netRn6,93 transMapEnsemblV5,108 transMapEnsemblV5,143 transMapEnsemblV5,645 transMapEstV5,77 transMapEstV5,112 transMapEstV5,614 transMapRefSeqV5,77 transMapRefSeqV5,112 transMapRefSeqV5,614 transMapRnaV5,77 transMapRnaV5,112 transMapRnaV5,614 transMapV5,183 transMapV5,218 transMapV5,720 uniprot,666 uniprot,706 uniprot,1799 alt uniprot,850 alter est,126 intronEst,207 mrna,72 alternating gold,89 alternative augustusGene,122 unipAliSwissprot,16 uniprot,163 uniprot,670 alternatives-from-sampling augustusGene,131 alus rmsk,160 always gold,120 uniprot,503 uniprot,960 uniprot,1411 uniprot,1579 amino unipModif,4 unipMut,3 uniprot,338 uniprot,350 uniprot,619 amount rmsk,215 amsterdam genscan,201 an chainNeoSch1,161 chainNeoSch1,187 chainNeoSch1,193 chainNetNeoSch1,164 chainNetNeoSch1,190 chainNetNeoSch1,196 chainNetRn6,156 chainNetRn6,182 chainNetRn6,188 chainRn6,153 chainRn6,179 chainRn6,185 cpgIslandExt,66 cpgIslandExtUnmasked,69 cpgIslandSuper,66 est,447 est,494 est,577 gc5BaseBw,65 intronEst,59 intronEst,528 intronEst,575 intronEst,658 nestedRepeats,196 nestedRepeats,347 netNeoSch1,161 netNeoSch1,187 netNeoSch1,193 netRn6,153 netRn6,179 netRn6,185 refGene,175 refGene,262 refGene,375 rmsk,370 uniprot,765 uniprot,899 uniprot,1203 uniprot,1467 uniprot,1568 xenoRefGene,141 xenoRefGene,228 xenoRefGene,340 analysis transMapEnsemblV5,537 transMapEstV5,506 transMapRefSeqV5,506 transMapRnaV5,506 transMapV5,612 uniprot,1648 uniprot,1728 analyze microsat,122 simpleRepeat,82 and augustusGene,9 augustusGene,60 augustusGene,74 augustusGene,87 augustusGene,206 augustusGene,271 augustusGene,277 augustusGene,296 augustusGene,327 chainNeoSch1,105 chainNeoSch1,119 chainNeoSch1,235 chainNeoSch1,243 chainNeoSch1,257 chainNeoSch1,297 chainNeoSch1,321 chainNeoSch1,447 chainNeoSch1,603 chainNeoSch1,640 chainNeoSch1,648 chainNeoSch1,789 chainNeoSch1,867 chainNeoSch1,899 chainNeoSch1,910 chainNeoSch1,919 chainNeoSch1,944 chainNeoSch1,959 chainNeoSch1,984 chainNeoSch1,990 chainNeoSch1,996 chainNeoSch1,1003 chainNeoSch1,1009 chainNeoSch1,1073 chainNeoSch1,1078 chainNetNeoSch1,14 chainNetNeoSch1,108 chainNetNeoSch1,122 chainNetNeoSch1,238 chainNetNeoSch1,246 chainNetNeoSch1,260 chainNetNeoSch1,300 chainNetNeoSch1,324 chainNetNeoSch1,450 chainNetNeoSch1,606 chainNetNeoSch1,643 chainNetNeoSch1,651 chainNetNeoSch1,792 chainNetNeoSch1,870 chainNetNeoSch1,902 chainNetNeoSch1,913 chainNetNeoSch1,922 chainNetNeoSch1,947 chainNetNeoSch1,962 chainNetNeoSch1,987 chainNetNeoSch1,993 chainNetNeoSch1,999 chainNetNeoSch1,1006 chainNetNeoSch1,1012 chainNetNeoSch1,1076 chainNetNeoSch1,1081 chainNetNeoSch1Viewchain,10 chainNetNeoSch1Viewnet,10 chainNetRn6,11 chainNetRn6,102 chainNetRn6,116 chainNetRn6,230 chainNetRn6,238 chainNetRn6,252 chainNetRn6,290 chainNetRn6,313 chainNetRn6,439 chainNetRn6,593 chainNetRn6,628 chainNetRn6,636 chainNetRn6,777 chainNetRn6,855 chainNetRn6,887 chainNetRn6,898 chainNetRn6,907 chainNetRn6,932 chainNetRn6,947 chainNetRn6,972 chainNetRn6,978 chainNetRn6,984 chainNetRn6,991 chainNetRn6,997 chainNetRn6,1061 chainNetRn6,1066 chainNetRn6Viewchain,9 chainNetRn6Viewnet,9 chainRn6,99 chainRn6,113 chainRn6,227 chainRn6,235 chainRn6,249 chainRn6,287 chainRn6,310 chainRn6,436 chainRn6,590 chainRn6,625 chainRn6,633 chainRn6,774 chainRn6,852 chainRn6,884 chainRn6,895 chainRn6,904 chainRn6,929 chainRn6,944 chainRn6,969 chainRn6,975 chainRn6,981 chainRn6,988 chainRn6,994 chainRn6,1058 chainRn6,1063 cpgIslandExt,12 cpgIslandExt,35 cpgIslandExt,183 cpgIslandExt,244 cpgIslandExt,248 cpgIslandExt,295 cpgIslandExt,508 cpgIslandExt,599 cpgIslandExtUnmasked,15 cpgIslandExtUnmasked,38 cpgIslandExtUnmasked,186 cpgIslandExtUnmasked,247 cpgIslandExtUnmasked,251 cpgIslandExtUnmasked,298 cpgIslandExtUnmasked,511 cpgIslandExtUnmasked,602 cpgIslandSuper,12 cpgIslandSuper,35 cpgIslandSuper,183 cpgIslandSuper,244 cpgIslandSuper,248 cpgIslandSuper,295 cpgIslandSuper,508 cpgIslandSuper,599 cytoBandIdeo,8 ensGene,6 ensGene,128 est,8 est,23 est,45 est,85 est,129 est,290 est,454 est,468 est,476 est,604 est,709 gap,5 gap,80 gap,102 gc5BaseBw,9 gc5BaseBw,22 gc5BaseBw,74 genscan,7 genscan,30 genscan,40 genscan,46 genscan,63 genscan,83 genscan,97 genscan,108 genscan,119 genscan,138 genscan,147 gold,6 gold,91 gold,105 gold,111 intronEst,10 intronEst,25 intronEst,86 intronEst,129 intronEst,166 intronEst,210 intronEst,371 intronEst,535 intronEst,549 intronEst,557 intronEst,685 intronEst,790 microsat,4 microsat,8 microsat,33 microsat,36 microsat,67 microsat,72 microsat,75 mrna,8 mrna,21 mrna,26 mrna,75 mrna,236 mrna,355 mrna,425 nestedRepeats,12 nestedRepeats,38 nestedRepeats,113 nestedRepeats,162 nestedRepeats,166 nestedRepeats,231 nestedRepeats,256 nestedRepeats,309 nestedRepeats,315 nestedRepeats,346 nestedRepeats,375 netNeoSch1,105 netNeoSch1,119 netNeoSch1,235 netNeoSch1,243 netNeoSch1,257 netNeoSch1,297 netNeoSch1,321 netNeoSch1,447 netNeoSch1,603 netNeoSch1,640 netNeoSch1,648 netNeoSch1,789 netNeoSch1,867 netNeoSch1,899 netNeoSch1,910 netNeoSch1,919 netNeoSch1,944 netNeoSch1,959 netNeoSch1,984 netNeoSch1,990 netNeoSch1,996 netNeoSch1,1003 netNeoSch1,1009 netNeoSch1,1073 netNeoSch1,1078 netRn6,99 netRn6,113 netRn6,227 netRn6,235 netRn6,249 netRn6,287 netRn6,310 netRn6,436 netRn6,590 netRn6,625 netRn6,633 netRn6,774 netRn6,852 netRn6,884 netRn6,895 netRn6,904 netRn6,929 netRn6,944 netRn6,969 netRn6,975 netRn6,981 netRn6,988 netRn6,994 netRn6,1058 netRn6,1063 refGene,6 refGene,18 refGene,44 refGene,54 refGene,77 refGene,111 refGene,161 refGene,186 refGene,219 refGene,232 refGene,299 refGene,326 refGene,412 rmsk,7 rmsk,28 rmsk,137 rmsk,221 rmsk,332 rmsk,338 rmsk,369 rmsk,398 simpleRepeat,9 simpleRepeat,42 transMapEnsemblV5,5 transMapEnsemblV5,11 transMapEnsemblV5,43 transMapEnsemblV5,93 transMapEnsemblV5,173 transMapEnsemblV5,198 transMapEnsemblV5,363 transMapEnsemblV5,365 transMapEnsemblV5,389 transMapEnsemblV5,406 transMapEnsemblV5,432 transMapEnsemblV5,463 transMapEnsemblV5,479 transMapEnsemblV5,494 transMapEnsemblV5,551 transMapEnsemblV5,636 transMapEnsemblV5,685 transMapEnsemblV5,699 transMapEnsemblV5,706 transMapEnsemblV5,764 transMapEstV5,9 transMapEstV5,62 transMapEstV5,142 transMapEstV5,167 transMapEstV5,332 transMapEstV5,334 transMapEstV5,358 transMapEstV5,375 transMapEstV5,401 transMapEstV5,432 transMapEstV5,448 transMapEstV5,463 transMapEstV5,520 transMapEstV5,605 transMapEstV5,654 transMapEstV5,668 transMapEstV5,675 transMapEstV5,733 transMapRefSeqV5,10 transMapRefSeqV5,62 transMapRefSeqV5,142 transMapRefSeqV5,167 transMapRefSeqV5,332 transMapRefSeqV5,334 transMapRefSeqV5,358 transMapRefSeqV5,375 transMapRefSeqV5,401 transMapRefSeqV5,432 transMapRefSeqV5,448 transMapRefSeqV5,463 transMapRefSeqV5,520 transMapRefSeqV5,605 transMapRefSeqV5,654 transMapRefSeqV5,668 transMapRefSeqV5,675 transMapRefSeqV5,733 transMapRnaV5,10 transMapRnaV5,62 transMapRnaV5,142 transMapRnaV5,167 transMapRnaV5,332 transMapRnaV5,334 transMapRnaV5,358 transMapRnaV5,375 transMapRnaV5,401 transMapRnaV5,432 transMapRnaV5,448 transMapRnaV5,463 transMapRnaV5,520 transMapRnaV5,605 transMapRnaV5,654 transMapRnaV5,668 transMapRnaV5,675 transMapRnaV5,733 transMapV5,8 transMapV5,16 transMapV5,73 transMapV5,87 transMapV5,138 transMapV5,161 transMapV5,168 transMapV5,248 transMapV5,273 transMapV5,438 transMapV5,440 transMapV5,464 transMapV5,481 transMapV5,507 transMapV5,538 transMapV5,554 transMapV5,569 transMapV5,626 transMapV5,711 transMapV5,760 transMapV5,774 transMapV5,781 transMapV5,839 ucscToINSDC,11 unipAliSwissprot,19 unipAliTrembl,11 unipChain,9 unipConflict,7 unipDisulfBond,7 unipDomain,5 unipInterest,7 unipLocCytopl,6 unipLocExtra,6 unipLocSignal,7 unipLocTransMemb,6 unipModif,8 unipMut,7 unipOther,7 unipRepeat,5 unipStruct,9 uniprot,8 uniprot,17 uniprot,174 uniprot,329 uniprot,345 uniprot,355 uniprot,369 uniprot,378 uniprot,403 uniprot,433 uniprot,439 uniprot,448 uniprot,488 uniprot,517 uniprot,568 uniprot,589 uniprot,611 uniprot,617 uniprot,702 uniprot,761 uniprot,796 uniprot,866 uniprot,926 uniprot,939 uniprot,1122 uniprot,1214 uniprot,1310 uniprot,1342 uniprot,1375 uniprot,1420 uniprot,1465 uniprot,1498 uniprot,1598 uniprot,1617 uniprot,1650 uniprot,1691 uniprot,1790 uniprot,1898 uniprot,1958 uniprot,1970 uniprot,2028 uniprot,2036 windowmaskerSdust,10 xenoRefGene,7 xenoRefGene,16 xenoRefGene,43 xenoRefGene,77 xenoRefGene,127 xenoRefGene,152 xenoRefGene,185 xenoRefGene,198 xenoRefGene,265 xenoRefGene,292 xenoRefGene,377 annot unipOther,2 annotated rmsk,67 uniprot,736 uniprot,994 uniprot,1014 uniprot,1027 uniprot,1034 uniprot,1040 uniprot,1053 uniprot,1082 uniprot,1233 uniprot,1265 annotation chainNeoSch1,310 chainNetNeoSch1,313 chainNetRn6,301 chainRn6,298 ensGene,165 netNeoSch1,310 netRn6,298 rmsk,38 transMapEnsemblV5,606 transMapEstV5,575 transMapRefSeqV5,575 transMapRnaV5,575 transMapV5,681 uniprot,143 uniprot,466 uniprot,487 uniprot,530 uniprot,605 uniprot,624 uniprot,1731 annotationonprotein uniprot,1929 annotations ensGene,156 genscan,120 nestedRepeats,71 refGene,220 transMapEnsemblV5,60 transMapEnsemblV5,539 transMapEnsemblV5,700 transMapEnsemblV5,708 transMapEstV5,508 transMapEstV5,669 transMapEstV5,677 transMapRefSeqV5,508 transMapRefSeqV5,669 transMapRefSeqV5,677 transMapRnaV5,508 transMapRnaV5,669 transMapRnaV5,677 transMapV5,75 transMapV5,614 transMapV5,775 transMapV5,783 unipOther,5 unipStruct,7 uniprot,6 uniprot,18 uniprot,54 uniprot,96 uniprot,128 uniprot,171 uniprot,212 uniprot,363 uniprot,394 uniprot,397 uniprot,455 uniprot,501 uniprot,595 uniprot,631 uniprot,662 uniprot,704 uniprot,718 uniprot,763 uniprot,1438 uniprot,1504 uniprot,1514 uniprot,1757 xenoRefGene,186 another transMapV5,80 any est,313 est,547 intronEst,394 intronEst,628 mrna,259 uniprot,660 uniprot,1146 uniprot,1250 api cpgIslandExt,519 cpgIslandExtUnmasked,522 cpgIslandSuper,519 ensGene,109 transMapEnsemblV5,563 transMapEstV5,532 transMapRefSeqV5,532 transMapRnaV5,532 transMapV5,638 appending transMapEnsemblV5,396 transMapEstV5,365 transMapRefSeqV5,365 transMapRnaV5,365 transMapV5,471 apply est,185 intronEst,266 mrna,131 approach uniprot,1531 appropriate refGene,144 xenoRefGene,110 apr est,807 genscan,224 intronEst,891 mrna,524 refGene,344 xenoRefGene,309 apsects gc5BaseBw,51 archive ensGene,142 uniprot,893 uniprot,1670 uniprot,1908 archives uniprot,1832 are augustusGene,27 chainNeoSch1,25 chainNeoSch1,44 chainNeoSch1,57 chainNeoSch1,148 chainNeoSch1,218 chainNeoSch1,229 chainNeoSch1,332 chainNeoSch1,401 chainNeoSch1,422 chainNeoSch1,429 chainNeoSch1,512 chainNeoSch1,705 chainNetNeoSch1,28 chainNetNeoSch1,47 chainNetNeoSch1,60 chainNetNeoSch1,151 chainNetNeoSch1,221 chainNetNeoSch1,232 chainNetNeoSch1,335 chainNetNeoSch1,404 chainNetNeoSch1,425 chainNetNeoSch1,432 chainNetNeoSch1,515 chainNetNeoSch1,708 chainNetRn6,25 chainNetRn6,44 chainNetRn6,57 chainNetRn6,145 chainNetRn6,213 chainNetRn6,224 chainNetRn6,324 chainNetRn6,393 chainNetRn6,414 chainNetRn6,421 chainNetRn6,504 chainNetRn6,693 chainRn6,22 chainRn6,41 chainRn6,54 chainRn6,142 chainRn6,210 chainRn6,221 chainRn6,321 chainRn6,390 chainRn6,411 chainRn6,418 chainRn6,501 chainRn6,690 cpgIslandExt,8 cpgIslandExt,17 cpgIslandExt,28 cpgIslandExt,116 cpgIslandExt,149 cpgIslandExt,153 cpgIslandExtUnmasked,11 cpgIslandExtUnmasked,20 cpgIslandExtUnmasked,31 cpgIslandExtUnmasked,119 cpgIslandExtUnmasked,152 cpgIslandExtUnmasked,156 cpgIslandSuper,8 cpgIslandSuper,17 cpgIslandSuper,28 cpgIslandSuper,116 cpgIslandSuper,149 cpgIslandSuper,153 ensGene,81 ensGene,121 est,27 est,64 est,146 est,156 gap,23 gap,68 genscan,25 genscan,160 gold,25 gold,83 gold,100 intronEst,39 intronEst,227 intronEst,237 intronEst,800 microsat,16 microsat,25 microsat,52 mrna,45 mrna,92 mrna,102 nestedRepeats,74 nestedRepeats,102 nestedRepeats,140 nestedRepeats,146 nestedRepeats,164 nestedRepeats,172 nestedRepeats,181 nestedRepeats,209 nestedRepeats,274 nestedRepeats,281 netNeoSch1,25 netNeoSch1,44 netNeoSch1,57 netNeoSch1,148 netNeoSch1,218 netNeoSch1,229 netNeoSch1,332 netNeoSch1,401 netNeoSch1,422 netNeoSch1,429 netNeoSch1,512 netNeoSch1,705 netRn6,22 netRn6,41 netRn6,54 netRn6,142 netRn6,210 netRn6,221 netRn6,321 netRn6,390 netRn6,411 netRn6,418 netRn6,501 netRn6,690 refGene,35 refGene,137 refGene,235 rmsk,43 rmsk,288 rmsk,304 rmsk,312 simpleRepeat,49 transMapEnsemblV5,55 transMapEnsemblV5,73 transMapEnsemblV5,451 transMapEnsemblV5,458 transMapEnsemblV5,467 transMapEnsemblV5,501 transMapEnsemblV5,511 transMapEnsemblV5,540 transMapEnsemblV5,579 transMapEstV5,42 transMapEstV5,420 transMapEstV5,427 transMapEstV5,436 transMapEstV5,470 transMapEstV5,480 transMapEstV5,509 transMapEstV5,548 transMapRefSeqV5,42 transMapRefSeqV5,420 transMapRefSeqV5,427 transMapRefSeqV5,436 transMapRefSeqV5,470 transMapRefSeqV5,480 transMapRefSeqV5,509 transMapRefSeqV5,548 transMapRnaV5,42 transMapRnaV5,420 transMapRnaV5,427 transMapRnaV5,436 transMapRnaV5,470 transMapRnaV5,480 transMapRnaV5,509 transMapRnaV5,548 transMapV5,41 transMapV5,68 transMapV5,526 transMapV5,533 transMapV5,542 transMapV5,576 transMapV5,586 transMapV5,615 transMapV5,654 uniprot,55 uniprot,93 uniprot,124 uniprot,146 uniprot,165 uniprot,175 uniprot,208 uniprot,456 uniprot,502 uniprot,555 uniprot,579 uniprot,596 uniprot,644 uniprot,679 uniprot,735 uniprot,868 uniprot,880 uniprot,1006 uniprot,1013 uniprot,1033 uniprot,1061 uniprot,1086 uniprot,1117 uniprot,1149 uniprot,1318 uniprot,1350 uniprot,1425 uniprot,1433 uniprot,1454 uniprot,1659 uniprot,1867 uniprot,1895 xenoRefGene,38 xenoRefGene,103 xenoRefGene,201 areas cpgIslandExt,305 cpgIslandExtUnmasked,308 cpgIslandSuper,305 gc5BaseBw,37 arian chainNeoSch1,957 chainNetNeoSch1,960 chainNetRn6,945 chainRn6,942 nestedRepeats,305 netNeoSch1,957 netRn6,942 rmsk,16 rmsk,328 arrangement cpgIslandExt,67 cpgIslandExtUnmasked,70 cpgIslandSuper,67 arrows nestedRepeats,145 nestedRepeats,163 as augustusGene,77 augustusGene,79 chainNeoSch1,474 chainNeoSch1,514 chainNeoSch1,537 chainNeoSch1,552 chainNeoSch1,816 chainNeoSch1,871 chainNeoSch1,929 chainNetNeoSch1,477 chainNetNeoSch1,517 chainNetNeoSch1,540 chainNetNeoSch1,555 chainNetNeoSch1,819 chainNetNeoSch1,874 chainNetNeoSch1,932 chainNetRn6,466 chainNetRn6,506 chainNetRn6,529 chainNetRn6,544 chainNetRn6,804 chainNetRn6,859 chainNetRn6,917 chainRn6,463 chainRn6,503 chainRn6,526 chainRn6,541 chainRn6,801 chainRn6,856 chainRn6,914 cpgIslandExt,165 cpgIslandExt,548 cpgIslandExt,550 cpgIslandExtUnmasked,168 cpgIslandExtUnmasked,551 cpgIslandExtUnmasked,553 cpgIslandSuper,165 cpgIslandSuper,548 cpgIslandSuper,550 ensGene,87 est,594 gap,70 genscan,35 genscan,37 intronEst,675 microsat,21 nestedRepeats,125 netNeoSch1,474 netNeoSch1,514 netNeoSch1,537 netNeoSch1,552 netNeoSch1,816 netNeoSch1,871 netNeoSch1,929 netRn6,463 netRn6,503 netRn6,526 netRn6,541 netRn6,801 netRn6,856 netRn6,914 rmsk,53 rmsk,55 transMapEnsemblV5,65 transMapEnsemblV5,187 transMapEnsemblV5,213 transMapEnsemblV5,225 transMapEnsemblV5,513 transMapEnsemblV5,624 transMapEstV5,156 transMapEstV5,182 transMapEstV5,194 transMapEstV5,482 transMapEstV5,593 transMapRefSeqV5,156 transMapRefSeqV5,182 transMapRefSeqV5,194 transMapRefSeqV5,482 transMapRefSeqV5,593 transMapRnaV5,156 transMapRnaV5,182 transMapRnaV5,194 transMapRnaV5,482 transMapRnaV5,593 transMapV5,262 transMapV5,288 transMapV5,300 transMapV5,588 transMapV5,699 uniprot,307 uniprot,598 uniprot,600 uniprot,621 uniprot,1100 uniprot,1778 windowmaskerSdust,18 ascii uniprot,1762 ask refGene,57 asm220157v1 chainNeoSch1,10 chainNeoSch1,74 chainNeoSch1,316 chainNetNeoSch1,11 chainNetNeoSch1,77 chainNetNeoSch1,319 chainNetNeoSch1Viewchain,7 chainNetNeoSch1Viewnet,7 netNeoSch1,10 netNeoSch1,74 netNeoSch1,316 assemblies augustusGene,196 augustusGene,237 chainNeoSch1,331 chainNeoSch1,595 chainNetNeoSch1,334 chainNetNeoSch1,598 chainNetRn6,323 chainNetRn6,585 chainRn6,320 chainRn6,582 gap,130 netNeoSch1,331 netNeoSch1,595 netRn6,320 netRn6,582 rmsk,107 transMapEnsemblV5,192 transMapEstV5,161 transMapRefSeqV5,161 transMapRnaV5,161 transMapV5,267 assembly augustusGene,197 chainNeoSch1,159 chainNeoSch1,166 chainNeoSch1,318 chainNetNeoSch1,162 chainNetNeoSch1,169 chainNetNeoSch1,321 chainNetRn6,154 chainNetRn6,161 chainNetRn6,310 chainRn6,151 chainRn6,158 chainRn6,307 gap,19 gap,21 gap,28 gap,37 gap,45 gap,116 gold,1 gold,2 gold,21 gold,23 gold,30 gold,39 gold,44 netNeoSch1,159 netNeoSch1,166 netNeoSch1,318 netRn6,151 netRn6,158 netRn6,307 transMapV5,105 transMapV5,123 transMapV5,134 ucscToINSDC,40 uniprot,445 uniprot,701 assembly.2bit cpgIslandExt,412 cpgIslandExtUnmasked,415 cpgIslandSuper,412 assigned transMapEnsemblV5,459 transMapEstV5,428 transMapRefSeqV5,428 transMapRnaV5,428 transMapV5,534 associated cpgIslandExt,18 cpgIslandExt,38 cpgIslandExt,510 cpgIslandExtUnmasked,21 cpgIslandExtUnmasked,41 cpgIslandExtUnmasked,513 cpgIslandSuper,18 cpgIslandSuper,38 cpgIslandSuper,510 est,107 gc5BaseBw,34 intronEst,188 rmsk,224 simpleRepeat,51 transMapEnsemblV5,580 transMapEstV5,549 transMapRefSeqV5,549 transMapRnaV5,549 transMapV5,655 uniprot,787 associates ucscToINSDC,16 astashyn refGene,360 xenoRefGene,325 at chainNeoSch1,431 chainNeoSch1,811 chainNeoSch1,933 chainNeoSch1,968 chainNeoSch1,973 chainNeoSch1,1014 chainNetNeoSch1,434 chainNetNeoSch1,814 chainNetNeoSch1,936 chainNetNeoSch1,971 chainNetNeoSch1,976 chainNetNeoSch1,1017 chainNetRn6,423 chainNetRn6,799 chainNetRn6,921 chainNetRn6,956 chainNetRn6,961 chainNetRn6,1002 chainRn6,420 chainRn6,796 chainRn6,918 chainRn6,953 chainRn6,958 chainRn6,999 cpgIslandExt,155 cpgIslandExt,218 cpgIslandExt,235 cpgIslandExtUnmasked,158 cpgIslandExtUnmasked,221 cpgIslandExtUnmasked,238 cpgIslandSuper,155 cpgIslandSuper,218 cpgIslandSuper,235 est,262 est,546 est,591 est,710 est,726 intronEst,65 intronEst,80 intronEst,105 intronEst,343 intronEst,627 intronEst,672 intronEst,791 intronEst,810 microsat,28 microsat,77 mrna,208 mrna,426 mrna,443 netNeoSch1,431 netNeoSch1,811 netNeoSch1,933 netNeoSch1,968 netNeoSch1,973 netNeoSch1,1014 netRn6,420 netRn6,796 netRn6,918 netRn6,953 netRn6,958 netRn6,999 refGene,125 refGene,300 refGene,316 rmsk,243 rmsk,267 transMapEnsemblV5,293 transMapEnsemblV5,681 transMapEstV5,262 transMapEstV5,650 transMapRefSeqV5,262 transMapRefSeqV5,650 transMapRnaV5,262 transMapRnaV5,650 transMapV5,117 transMapV5,368 transMapV5,756 ucscToINSDC,3 uniprot,825 uniprot,1946 uniprot,1991 xenoRefGene,91 xenoRefGene,266 xenoRefGene,282 attempt est,578 intronEst,659 augustus augustusGene,1 augustusGene,2 augustusGene,22 augustusGene,148 augustusGene,256 uniprot,835 uniprot,867 auml windowmaskerSdust,95 automated transMapEnsemblV5,536 transMapEstV5,505 transMapRefSeqV5,505 transMapRnaV5,505 transMapV5,611 uniprot,1468 uniprot,1727 automatically uniprot,1565 av uniprot,2015 available augustusGene,239 cpgIslandExt,543 cpgIslandExtUnmasked,546 cpgIslandSuper,543 ensGene,82 ensGene,122 nestedRepeats,259 nestedRepeats,276 rmsk,73 transMapEnsemblV5,188 transMapEnsemblV5,245 transMapEstV5,157 transMapEstV5,214 transMapRefSeqV5,157 transMapRefSeqV5,214 transMapRnaV5,157 transMapRnaV5,214 transMapV5,263 transMapV5,320 uniprot,881 uniprot,1660 uniprot,1981 windowmaskerSdust,40 average nestedRepeats,186 nestedRepeats,221 aware uniprot,1456 awk cpgIslandExt,424 cpgIslandExtUnmasked,427 cpgIslandSuper,424 axt chainNeoSch1,616 chainNeoSch1,623 chainNetNeoSch1,619 chainNetNeoSch1,626 chainNetRn6,606 chainNetRn6,613 chainRn6,603 chainRn6,610 netNeoSch1,616 netNeoSch1,623 netRn6,603 netRn6,610 axtchain chainNeoSch1,628 chainNeoSch1,716 chainNeoSch1,964 chainNetNeoSch1,631 chainNetNeoSch1,719 chainNetNeoSch1,967 chainNetRn6,618 chainNetRn6,704 chainNetRn6,952 chainRn6,615 chainRn6,701 chainRn6,949 netNeoSch1,628 netNeoSch1,716 netNeoSch1,964 netRn6,615 netRn6,701 netRn6,949 b transMapEnsemblV5,717 transMapEnsemblV5,727 transMapEstV5,686 transMapEstV5,696 transMapRefSeqV5,686 transMapRefSeqV5,696 transMapRnaV5,686 transMapRnaV5,696 transMapV5,792 transMapV5,802 back chainNeoSch1,608 chainNetNeoSch1,611 chainNetRn6,598 chainRn6,595 netNeoSch1,608 netRn6,595 baertsch augustusGene,290 chainNeoSch1,1002 chainNeoSch1,1060 chainNeoSch1,1106 chainNetNeoSch1,1005 chainNetNeoSch1,1063 chainNetNeoSch1,1109 chainNetRn6,990 chainNetRn6,1048 chainNetRn6,1094 chainRn6,987 chainRn6,1045 chainRn6,1091 netNeoSch1,1002 netNeoSch1,1060 netNeoSch1,1106 netRn6,987 netRn6,1045 netRn6,1091 transMapEnsemblV5,758 transMapEstV5,727 transMapRefSeqV5,727 transMapRnaV5,727 transMapV5,833 bairoch uniprot,2022 band cytoBandIdeo,2 barker ensGene,170 base cpgIslandExt,46 cpgIslandExt,53 cpgIslandExt,234 cpgIslandExtUnmasked,49 cpgIslandExtUnmasked,56 cpgIslandExtUnmasked,237 cpgIslandSuper,46 cpgIslandSuper,53 cpgIslandSuper,234 est,383 est,417 est,693 est,701 est,713 intronEst,464 intronEst,498 intronEst,774 intronEst,782 intronEst,794 mrna,356 mrna,409 mrna,417 mrna,429 refGene,283 refGene,291 refGene,303 rmsk,217 rmsk,219 rmsk,222 xenoRefGene,249 xenoRefGene,257 xenoRefGene,269 base-level transMapEnsemblV5,319 transMapEstV5,288 transMapRefSeqV5,288 transMapRnaV5,288 transMapV5,394 based augustusGene,28 chainNeoSch1,334 chainNeoSch1,360 chainNetNeoSch1,337 chainNetNeoSch1,363 chainNetRn6,326 chainNetRn6,352 chainRn6,323 chainRn6,349 genscan,26 netNeoSch1,334 netNeoSch1,360 netRn6,323 netRn6,349 uniprot,60 uniprot,727 uniprot,1604 bases cpgIslandExt,7 cpgIslandExt,353 cpgIslandExtUnmasked,10 cpgIslandExtUnmasked,356 cpgIslandSuper,7 cpgIslandSuper,353 est,33 est,394 est,666 gap,139 gc5BaseBw,25 intronEst,45 intronEst,83 intronEst,475 intronEst,747 transMapV5,165 basis cpgIslandExt,289 cpgIslandExtUnmasked,292 cpgIslandSuper,289 uniprot,1570 bc149621.1 transMapEnsemblV5,456 transMapEstV5,425 transMapRefSeqV5,425 transMapRnaV5,425 transMapV5,531 bc149621.1-1 transMapEnsemblV5,462 transMapEnsemblV5,473 transMapEstV5,431 transMapEstV5,442 transMapRefSeqV5,431 transMapRefSeqV5,442 transMapRnaV5,431 transMapRnaV5,442 transMapV5,537 transMapV5,548 bc149621.1-1.1 transMapEnsemblV5,484 transMapEstV5,453 transMapRefSeqV5,453 transMapRnaV5,453 transMapV5,559 bc149621.1-2 transMapEnsemblV5,464 transMapEnsemblV5,486 transMapEstV5,433 transMapEstV5,455 transMapRefSeqV5,433 transMapRefSeqV5,455 transMapRnaV5,433 transMapRnaV5,455 transMapV5,539 transMapV5,561 bc149621.1-2.1 transMapEnsemblV5,493 transMapEstV5,462 transMapRefSeqV5,462 transMapRnaV5,462 transMapV5,568 bc149621.1-2.2 transMapEnsemblV5,495 transMapEstV5,464 transMapRefSeqV5,464 transMapRnaV5,464 transMapV5,570 be augustusGene,99 chainNeoSch1,114 chainNeoSch1,441 chainNetNeoSch1,117 chainNetNeoSch1,444 chainNetRn6,111 chainNetRn6,433 chainRn6,108 chainRn6,430 cpgIslandExt,37 cpgIslandExt,70 cpgIslandExt,187 cpgIslandExt,513 cpgIslandExt,532 cpgIslandExt,561 cpgIslandExt,572 cpgIslandExtUnmasked,40 cpgIslandExtUnmasked,73 cpgIslandExtUnmasked,190 cpgIslandExtUnmasked,516 cpgIslandExtUnmasked,535 cpgIslandExtUnmasked,564 cpgIslandExtUnmasked,575 cpgIslandSuper,37 cpgIslandSuper,70 cpgIslandSuper,187 cpgIslandSuper,513 cpgIslandSuper,532 cpgIslandSuper,561 cpgIslandSuper,572 ensGene,61 ensGene,104 ensGene,138 est,106 est,119 est,141 est,250 est,260 est,271 est,302 est,320 est,330 est,379 est,430 est,526 est,634 gc5BaseBw,41 intronEst,56 intronEst,79 intronEst,187 intronEst,200 intronEst,222 intronEst,331 intronEst,341 intronEst,352 intronEst,383 intronEst,401 intronEst,411 intronEst,460 intronEst,511 intronEst,607 intronEst,715 microsat,19 microsat,39 mrna,65 mrna,87 mrna,196 mrna,206 mrna,217 mrna,248 mrna,266 mrna,276 mrna,325 mrna,369 nestedRepeats,269 nestedRepeats,291 netNeoSch1,114 netNeoSch1,441 netRn6,108 netRn6,430 refGene,120 rmsk,278 rmsk,284 rmsk,298 simpleRepeat,44 transMapEnsemblV5,63 transMapEnsemblV5,109 transMapEnsemblV5,144 transMapEnsemblV5,524 transMapEnsemblV5,553 transMapEnsemblV5,608 transMapEnsemblV5,616 transMapEnsemblV5,639 transMapEnsemblV5,646 transMapEstV5,78 transMapEstV5,113 transMapEstV5,493 transMapEstV5,522 transMapEstV5,577 transMapEstV5,585 transMapEstV5,608 transMapEstV5,615 transMapRefSeqV5,78 transMapRefSeqV5,113 transMapRefSeqV5,493 transMapRefSeqV5,522 transMapRefSeqV5,577 transMapRefSeqV5,585 transMapRefSeqV5,608 transMapRefSeqV5,615 transMapRnaV5,78 transMapRnaV5,113 transMapRnaV5,493 transMapRnaV5,522 transMapRnaV5,577 transMapRnaV5,585 transMapRnaV5,608 transMapRnaV5,615 transMapV5,184 transMapV5,219 transMapV5,599 transMapV5,628 transMapV5,683 transMapV5,691 transMapV5,714 transMapV5,721 uniprot,181 uniprot,246 uniprot,1094 uniprot,1105 uniprot,1143 uniprot,1197 uniprot,1270 uniprot,1327 uniprot,1556 uniprot,1694 uniprot,1715 uniprot,1740 uniprot,1750 uniprot,1759 uniprot,1770 uniprot,1793 uniprot,1800 uniprot,1882 xenoRefGene,86 bears est,91 intronEst,172 because cpgIslandExt,61 cpgIslandExt,107 cpgIslandExtUnmasked,64 cpgIslandExtUnmasked,110 cpgIslandSuper,61 cpgIslandSuper,107 est,626 intronEst,707 uniprot,674 bed3 windowmaskerSdust,76 been chainNeoSch1,582 chainNetNeoSch1,585 chainNetRn6,574 chainRn6,571 intronEst,7 nestedRepeats,89 netNeoSch1,582 netRn6,571 rmsk,70 rmsk,109 uniprot,34 uniprot,47 uniprot,303 uniprot,1043 before chainNeoSch1,918 chainNetNeoSch1,921 chainNetRn6,906 chainRn6,903 est,563 intronEst,644 netNeoSch1,918 netRn6,903 uniprot,934 below chainNeoSch1,692 chainNetNeoSch1,695 chainNetRn6,680 chainRn6,677 ensGene,54 genscan,154 genscan,168 nestedRepeats,68 netNeoSch1,692 netRn6,677 rmsk,104 uniprot,73 uniprot,92 uniprot,189 uniprot,207 uniprot,769 uniprot,898 benson est,743 est,771 intronEst,827 intronEst,855 microsat,102 microsat,112 microsat,114 mrna,460 mrna,488 simpleRepeat,64 simpleRepeat,72 simpleRepeat,74 best chainNeoSch1,275 chainNeoSch1,524 chainNetNeoSch1,278 chainNetNeoSch1,527 chainNetRn6,270 chainNetRn6,516 chainRn6,267 chainRn6,513 est,708 intronEst,789 mrna,424 netNeoSch1,275 netNeoSch1,524 netRn6,267 netRn6,513 refGene,298 transMapEnsemblV5,240 transMapEstV5,209 transMapRefSeqV5,209 transMapRnaV5,209 transMapV5,66 transMapV5,315 uniprot,1074 uniprot,1415 xenoRefGene,264 beta uniprot,364 better est,71 mrna,52 between chainNeoSch1,55 chainNeoSch1,633 chainNeoSch1,865 chainNetNeoSch1,58 chainNetNeoSch1,636 chainNetNeoSch1,868 chainNetRn6,55 chainNetRn6,623 chainNetRn6,853 chainRn6,52 chainRn6,620 chainRn6,850 est,15 est,82 gap,126 gold,97 gold,102 intronEst,17 intronEst,74 intronEst,163 mrna,16 netNeoSch1,55 netNeoSch1,633 netNeoSch1,865 netRn6,52 netRn6,620 netRn6,850 uniprot,375 uniprot,922 uniprot,1371 uniprot,1615 bias uniprot,400 bigbed uniprot,1736 bigbedtobed transMapEnsemblV5,613 transMapEnsemblV5,658 transMapEstV5,582 transMapEstV5,627 transMapRefSeqV5,582 transMapRefSeqV5,627 transMapRnaV5,582 transMapRnaV5,627 transMapV5,688 transMapV5,733 uniprot,1767 uniprot,1812 bigpsl transMapEnsemblV5,543 transMapEstV5,512 transMapRefSeqV5,512 transMapRnaV5,512 transMapV5,618 binaries transMapEnsemblV5,637 transMapEstV5,606 transMapRefSeqV5,606 transMapRnaV5,606 transMapV5,712 uniprot,1791 binary cpgIslandExt,570 cpgIslandExtUnmasked,573 cpgIslandSuper,570 transMapEnsemblV5,627 transMapEstV5,596 transMapRefSeqV5,596 transMapRnaV5,596 transMapV5,702 uniprot,1781 biocomput chainNeoSch1,1053 chainNetNeoSch1,1056 chainNetRn6,1041 chainRn6,1038 netNeoSch1,1053 netRn6,1038 bioinformatics augustusGene,307 augustusGene,332 transMapEnsemblV5,775 transMapEstV5,744 transMapRefSeqV5,744 transMapRnaV5,744 transMapV5,850 windowmaskerSdust,106 biol cpgIslandExt,615 cpgIslandExtUnmasked,618 cpgIslandSuper,615 genscan,222 transMapEnsemblV5,810 transMapEstV5,779 transMapRefSeqV5,779 transMapRnaV5,779 transMapV5,885 biological uniprot,320 biology genscan,200 birds augustusGene,203 birney ensGene,172 black gap,71 gap,110 blast uniprot,949 uniprot,1084 uniprot,1115 blast-like est,801 intronEst,885 mrna,518 refGene,338 xenoRefGene,303 blastz chainNeoSch1,930 chainNeoSch1,1117 chainNetNeoSch1,933 chainNetNeoSch1,1120 chainNetRn6,918 chainNetRn6,1105 chainRn6,915 chainRn6,1102 netNeoSch1,930 netNeoSch1,1117 netRn6,915 netRn6,1102 transMapEnsemblV5,78 transMapEnsemblV5,195 transMapEstV5,47 transMapEstV5,164 transMapRefSeqV5,47 transMapRefSeqV5,164 transMapRnaV5,47 transMapRnaV5,164 transMapV5,48 transMapV5,143 transMapV5,270 blat est,653 est,662 est,799 intronEst,734 intronEst,743 intronEst,883 mrna,394 mrna,516 refGene,259 refGene,336 transMapEnsemblV5,166 transMapEstV5,135 transMapRefSeqV5,135 transMapRnaV5,135 transMapV5,125 transMapV5,149 transMapV5,156 transMapV5,241 xenoRefGene,225 blat--the xenoRefGene,302 blocks chainNeoSch1,48 chainNeoSch1,657 chainNeoSch1,678 chainNetNeoSch1,51 chainNetNeoSch1,660 chainNetNeoSch1,681 chainNetRn6,48 chainNetRn6,645 chainNetRn6,666 chainRn6,45 chainRn6,642 chainRn6,663 gold,107 gold,134 intronEst,77 netNeoSch1,48 netNeoSch1,657 netNeoSch1,678 netRn6,45 netRn6,642 netRn6,663 blog cpgIslandExt,553 cpgIslandExtUnmasked,556 cpgIslandSuper,553 ensGene,131 blue unipAliSwissprot,11 unipAliSwissprot,15 uniprot,507 uniprot,583 bond uniprot,473 bonds unipDisulfBond,2 unipDisulfBond,5 uniprot,334 uniprot,336 both chainNeoSch1,101 chainNeoSch1,123 chainNeoSch1,178 chainNeoSch1,908 chainNetNeoSch1,104 chainNetNeoSch1,126 chainNetNeoSch1,181 chainNetNeoSch1,911 chainNetRn6,100 chainNetRn6,120 chainNetRn6,173 chainNetRn6,896 chainRn6,97 chainRn6,117 chainRn6,170 chainRn6,893 netNeoSch1,101 netNeoSch1,123 netNeoSch1,178 netNeoSch1,908 netRn6,97 netRn6,117 netRn6,170 netRn6,893 refGene,158 refGene,229 transMapEnsemblV5,509 transMapEstV5,478 transMapRefSeqV5,478 transMapRnaV5,478 transMapV5,584 uniprot,675 uniprot,1616 xenoRefGene,124 xenoRefGene,195 bothgap chainNeoSch1,759 chainNetNeoSch1,762 chainNetRn6,747 chainRn6,744 netNeoSch1,759 netRn6,744 boundaries gold,82 box chainNeoSch1,384 chainNeoSch1,466 chainNetNeoSch1,387 chainNetNeoSch1,469 chainNetRn6,376 chainNetRn6,458 chainRn6,373 chainRn6,455 est,205 est,216 est,256 gap,111 intronEst,286 intronEst,297 intronEst,337 mrna,151 mrna,162 mrna,202 netNeoSch1,384 netNeoSch1,466 netRn6,373 netRn6,455 refGene,248 xenoRefGene,214 boxes chainNeoSch1,129 chainNeoSch1,139 chainNeoSch1,455 chainNetNeoSch1,132 chainNetNeoSch1,142 chainNetNeoSch1,458 chainNetRn6,126 chainNetRn6,136 chainNetRn6,447 chainRn6,123 chainRn6,133 chainRn6,444 est,176 gap,72 intronEst,257 mrna,122 nestedRepeats,126 netNeoSch1,129 netNeoSch1,139 netNeoSch1,455 netRn6,123 netRn6,133 netRn6,444 bp cpgIslandExt,272 cpgIslandExtUnmasked,275 cpgIslandSuper,272 branch transMapEnsemblV5,218 transMapEstV5,187 transMapRefSeqV5,187 transMapRnaV5,187 transMapV5,293 branch-point augustusGene,55 brejov transMapEnsemblV5,715 transMapEstV5,684 transMapRefSeqV5,684 transMapRnaV5,684 transMapV5,790 brian uniprot,1959 bridge gold,132 bridged gap,100 briefly uniprot,778 brown gold,92 gold,106 refGene,354 xenoRefGene,319 browser chainNeoSch1,988 chainNetNeoSch1,991 chainNetRn6,976 chainRn6,973 cpgIslandExt,522 cpgIslandExtUnmasked,525 cpgIslandSuper,522 ensGene,67 est,223 est,347 est,364 intronEst,304 intronEst,428 intronEst,445 mrna,169 mrna,293 mrna,310 nestedRepeats,243 netNeoSch1,988 netRn6,973 transMapEnsemblV5,37 transMapEnsemblV5,164 transMapEnsemblV5,530 transMapEstV5,35 transMapEstV5,133 transMapEstV5,499 transMapRefSeqV5,35 transMapRefSeqV5,133 transMapRefSeqV5,499 transMapRnaV5,35 transMapRnaV5,133 transMapRnaV5,499 transMapV5,34 transMapV5,239 transMapV5,605 ucscToINSDC,19 uniprot,1544 uniprot,1721 browsing uniprot,1662 build uniprot,1552 builds transMapEnsemblV5,54 built augustusGene,51 augustusGene,67 burge genscan,22 genscan,146 genscan,166 genscan,173 genscan,180 genscan,207 but chainNeoSch1,557 chainNetNeoSch1,560 chainNetRn6,549 chainRn6,546 est,483 est,540 est,593 intronEst,564 intronEst,621 intronEst,674 netNeoSch1,557 netRn6,546 rmsk,311 uniprot,638 uniprot,1047 button chainNeoSch1,355 chainNetNeoSch1,358 chainNetRn6,347 chainRn6,344 netNeoSch1,355 netRn6,344 by augustusGene,147 augustusGene,266 augustusGene,282 chainNeoSch1,116 chainNeoSch1,132 chainNeoSch1,325 chainNeoSch1,388 chainNeoSch1,425 chainNeoSch1,443 chainNeoSch1,825 chainNeoSch1,937 chainNeoSch1,956 chainNeoSch1,976 chainNeoSch1,1000 chainNeoSch1,1021 chainNetNeoSch1,119 chainNetNeoSch1,135 chainNetNeoSch1,328 chainNetNeoSch1,391 chainNetNeoSch1,428 chainNetNeoSch1,446 chainNetNeoSch1,828 chainNetNeoSch1,940 chainNetNeoSch1,959 chainNetNeoSch1,979 chainNetNeoSch1,1003 chainNetNeoSch1,1024 chainNetRn6,113 chainNetRn6,129 chainNetRn6,317 chainNetRn6,380 chainNetRn6,417 chainNetRn6,435 chainNetRn6,813 chainNetRn6,925 chainNetRn6,944 chainNetRn6,964 chainNetRn6,988 chainNetRn6,1009 chainRn6,110 chainRn6,126 chainRn6,314 chainRn6,377 chainRn6,414 chainRn6,432 chainRn6,810 chainRn6,922 chainRn6,941 chainRn6,961 chainRn6,985 chainRn6,1006 cpgIslandExt,49 cpgIslandExt,194 cpgIslandExt,229 cpgIslandExt,406 cpgIslandExt,596 cpgIslandExtUnmasked,52 cpgIslandExtUnmasked,197 cpgIslandExtUnmasked,232 cpgIslandExtUnmasked,409 cpgIslandExtUnmasked,599 cpgIslandSuper,49 cpgIslandSuper,194 cpgIslandSuper,229 cpgIslandSuper,406 cpgIslandSuper,596 ensGene,15 est,265 est,493 est,661 est,739 gap,93 gc5BaseBw,81 genscan,20 genscan,88 genscan,121 gold,85 intronEst,91 intronEst,346 intronEst,574 intronEst,742 intronEst,823 microsat,110 mrna,211 mrna,456 nestedRepeats,8 nestedRepeats,91 nestedRepeats,129 netNeoSch1,116 netNeoSch1,132 netNeoSch1,325 netNeoSch1,388 netNeoSch1,425 netNeoSch1,443 netNeoSch1,825 netNeoSch1,937 netNeoSch1,956 netNeoSch1,976 netNeoSch1,1000 netNeoSch1,1021 netRn6,110 netRn6,126 netRn6,314 netRn6,377 netRn6,414 netRn6,432 netRn6,810 netRn6,922 netRn6,941 netRn6,961 netRn6,985 netRn6,1006 refGene,134 refGene,139 refGene,203 refGene,221 refGene,227 refGene,323 refGene,328 rmsk,4 rmsk,14 rmsk,50 simpleRepeat,6 simpleRepeat,22 simpleRepeat,70 transMapEnsemblV5,23 transMapEnsemblV5,227 transMapEnsemblV5,395 transMapEnsemblV5,678 transMapEnsemblV5,696 transMapEnsemblV5,702 transMapEnsemblV5,740 transMapEstV5,21 transMapEstV5,196 transMapEstV5,364 transMapEstV5,647 transMapEstV5,665 transMapEstV5,671 transMapEstV5,709 transMapRefSeqV5,21 transMapRefSeqV5,196 transMapRefSeqV5,364 transMapRefSeqV5,647 transMapRefSeqV5,665 transMapRefSeqV5,671 transMapRefSeqV5,709 transMapRnaV5,21 transMapRnaV5,196 transMapRnaV5,364 transMapRnaV5,647 transMapRnaV5,665 transMapRnaV5,671 transMapRnaV5,709 transMapV5,20 transMapV5,302 transMapV5,470 transMapV5,753 transMapV5,771 transMapV5,777 transMapV5,815 ucscToINSDC,50 uniprot,39 uniprot,49 uniprot,224 uniprot,713 uniprot,720 uniprot,818 uniprot,987 uniprot,995 uniprot,1015 uniprot,1028 uniprot,1045 uniprot,1538 uniprot,1764 uniprot,1943 windowmaskerSdust,6 windowmaskerSdust,20 xenoRefGene,100 xenoRefGene,105 xenoRefGene,169 xenoRefGene,187 xenoRefGene,193 xenoRefGene,289 xenoRefGene,294 c cpgIslandExt,44 cpgIslandExt,389 cpgIslandExtUnmasked,47 cpgIslandExtUnmasked,392 cpgIslandSuper,44 cpgIslandSuper,389 gc5BaseBw,23 genscan,181 genscan,208 transMapEnsemblV5,725 transMapEnsemblV5,731 transMapEstV5,694 transMapEstV5,700 transMapRefSeqV5,694 transMapRefSeqV5,700 transMapRnaV5,694 transMapRnaV5,700 transMapV5,800 transMapV5,806 windowmaskerSdust,30 c-114100-125-31 chainNeoSch1,687 chainNetNeoSch1,690 netNeoSch1,687 c-90100-100-25 chainNetRn6,675 chainRn6,672 netRn6,672 caenorhabditis augustusGene,212 calculated cpgIslandExt,369 cpgIslandExtUnmasked,372 cpgIslandSuper,369 calculation cpgIslandExt,399 cpgIslandExtUnmasked,402 cpgIslandSuper,399 california chainNeoSch1,972 chainNeoSch1,1018 chainNetNeoSch1,975 chainNetNeoSch1,1021 chainNetRn6,960 chainNetRn6,1006 chainRn6,957 chainRn6,1003 netNeoSch1,972 netNeoSch1,1018 netRn6,957 netRn6,1003 cameron ensGene,174 can augustusGene,98 chainNeoSch1,96 chainNeoSch1,113 chainNetNeoSch1,99 chainNetNeoSch1,116 chainNetRn6,95 chainNetRn6,110 chainRn6,92 chainRn6,107 cpgIslandExt,512 cpgIslandExt,530 cpgIslandExt,560 cpgIslandExt,571 cpgIslandExtUnmasked,515 cpgIslandExtUnmasked,533 cpgIslandExtUnmasked,563 cpgIslandExtUnmasked,574 cpgIslandSuper,512 cpgIslandSuper,530 cpgIslandSuper,560 cpgIslandSuper,571 ensGene,60 ensGene,103 ensGene,137 est,118 est,249 intronEst,199 intronEst,330 mrna,64 mrna,195 netNeoSch1,96 netNeoSch1,113 netRn6,92 netRn6,107 refGene,119 rmsk,116 simpleRepeat,35 transMapEnsemblV5,523 transMapEnsemblV5,552 transMapEnsemblV5,607 transMapEnsemblV5,615 transMapEnsemblV5,638 transMapEnsemblV5,644 transMapEstV5,492 transMapEstV5,521 transMapEstV5,576 transMapEstV5,584 transMapEstV5,607 transMapEstV5,613 transMapRefSeqV5,492 transMapRefSeqV5,521 transMapRefSeqV5,576 transMapRefSeqV5,584 transMapRefSeqV5,607 transMapRefSeqV5,613 transMapRnaV5,492 transMapRnaV5,521 transMapRnaV5,576 transMapRnaV5,584 transMapRnaV5,607 transMapRnaV5,613 transMapV5,598 transMapV5,627 transMapV5,682 transMapV5,690 transMapV5,713 transMapV5,719 uniprot,180 uniprot,656 uniprot,1064 uniprot,1093 uniprot,1104 uniprot,1326 uniprot,1555 uniprot,1693 uniprot,1714 uniprot,1739 uniprot,1749 uniprot,1758 uniprot,1769 uniprot,1792 uniprot,1798 uniprot,1881 xenoRefGene,85 cannot uniprot,1269 canonical intronEst,68 cap-selected est,556 intronEst,637 cap-selection est,565 intronEst,646 cases chainNeoSch1,200 chainNeoSch1,412 chainNetNeoSch1,203 chainNetNeoSch1,415 chainNetRn6,195 chainNetRn6,404 chainRn6,192 chainRn6,401 netNeoSch1,200 netNeoSch1,412 netRn6,192 netRn6,401 uniprot,757 uniprot,1183 uniprot,1452 cat uniprot,1936 categorized chainNeoSch1,513 chainNetNeoSch1,516 chainNetRn6,505 chainRn6,502 netNeoSch1,513 netRn6,502 cauldron chainNeoSch1,1070 chainNetNeoSch1,1073 chainNetRn6,1058 chainRn6,1055 netNeoSch1,1070 netRn6,1055 cause chainNeoSch1,495 chainNetNeoSch1,498 chainNetRn6,487 chainRn6,484 netNeoSch1,495 netRn6,484 caused chainNeoSch1,115 chainNetNeoSch1,118 chainNetRn6,112 chainRn6,109 netNeoSch1,115 netRn6,109 cavanaugh est,745 intronEst,829 mrna,462 cb transMapEnsemblV5,791 transMapEstV5,760 transMapRefSeqV5,760 transMapRnaV5,760 transMapV5,866 cdna augustusGene,299 est,458 est,461 intronEst,539 intronEst,542 transMapEnsemblV5,388 transMapEnsemblV5,684 transMapEnsemblV5,767 transMapEstV5,357 transMapEstV5,653 transMapEstV5,736 transMapRefSeqV5,357 transMapRefSeqV5,653 transMapRefSeqV5,736 transMapRnaV5,357 transMapRnaV5,653 transMapRnaV5,736 transMapV5,15 transMapV5,463 transMapV5,759 transMapV5,842 cdnas transMapEnsemblV5,124 transMapEstV5,93 transMapRefSeqV5,93 transMapRnaV5,93 transMapV5,199 cell uniprot,563 cells est,453 intronEst,534 cerevisiae augustusGene,222 certain nestedRepeats,294 rmsk,301 cg cpgIslandExt,243 cpgIslandExt,281 cpgIslandExt,339 cpgIslandExtUnmasked,246 cpgIslandExtUnmasked,284 cpgIslandExtUnmasked,342 cpgIslandSuper,243 cpgIslandSuper,281 cpgIslandSuper,339 chain chainNeoSch1,4 chainNeoSch1,31 chainNeoSch1,61 chainNeoSch1,64 chainNeoSch1,126 chainNeoSch1,280 chainNeoSch1,323 chainNeoSch1,418 chainNeoSch1,473 chainNeoSch1,577 chainNeoSch1,785 chainNeoSch1,828 chainNeoSch1,839 chainNeoSch1,847 chainNeoSch1,852 chainNeoSch1,875 chainNeoSch1,884 chainNetNeoSch1,4 chainNetNeoSch1,13 chainNetNeoSch1,34 chainNetNeoSch1,64 chainNetNeoSch1,67 chainNetNeoSch1,129 chainNetNeoSch1,283 chainNetNeoSch1,326 chainNetNeoSch1,421 chainNetNeoSch1,476 chainNetNeoSch1,580 chainNetNeoSch1,788 chainNetNeoSch1,831 chainNetNeoSch1,842 chainNetNeoSch1,850 chainNetNeoSch1,855 chainNetNeoSch1,878 chainNetNeoSch1,887 chainNetNeoSch1Viewchain,1 chainNetNeoSch1Viewchain,9 chainNetNeoSch1Viewnet,9 chainNetRn6,2 chainNetRn6,10 chainNetRn6,31 chainNetRn6,61 chainNetRn6,64 chainNetRn6,123 chainNetRn6,273 chainNetRn6,315 chainNetRn6,410 chainNetRn6,465 chainNetRn6,569 chainNetRn6,773 chainNetRn6,816 chainNetRn6,827 chainNetRn6,835 chainNetRn6,840 chainNetRn6,863 chainNetRn6,872 chainNetRn6Viewchain,1 chainNetRn6Viewchain,8 chainNetRn6Viewnet,8 chainRn6,2 chainRn6,28 chainRn6,58 chainRn6,61 chainRn6,120 chainRn6,270 chainRn6,312 chainRn6,407 chainRn6,462 chainRn6,566 chainRn6,770 chainRn6,813 chainRn6,824 chainRn6,832 chainRn6,837 chainRn6,860 chainRn6,869 netNeoSch1,31 netNeoSch1,61 netNeoSch1,64 netNeoSch1,126 netNeoSch1,280 netNeoSch1,323 netNeoSch1,418 netNeoSch1,473 netNeoSch1,577 netNeoSch1,785 netNeoSch1,828 netNeoSch1,839 netNeoSch1,847 netNeoSch1,852 netNeoSch1,875 netNeoSch1,884 netRn6,28 netRn6,58 netRn6,61 netRn6,120 netRn6,270 netRn6,312 netRn6,407 netRn6,462 netRn6,566 netRn6,770 netRn6,813 netRn6,824 netRn6,832 netRn6,837 netRn6,860 netRn6,869 transMapV5,137 uniprot,290 chained chainNeoSch1,12 chainRn6,9 chainnet chainNeoSch1,802 chainNeoSch1,1007 chainNetNeoSch1,805 chainNetNeoSch1,1010 chainNetRn6,790 chainNetRn6,995 chainRn6,787 chainRn6,992 netNeoSch1,802 netNeoSch1,1007 netRn6,787 netRn6,992 chains chainNeoSch1,203 chainNeoSch1,214 chainNeoSch1,225 chainNeoSch1,328 chainNeoSch1,367 chainNeoSch1,400 chainNeoSch1,405 chainNeoSch1,427 chainNeoSch1,439 chainNeoSch1,446 chainNeoSch1,503 chainNeoSch1,675 chainNeoSch1,690 chainNeoSch1,704 chainNeoSch1,773 chainNeoSch1,794 chainNeoSch1,809 chainNeoSch1,869 chainNeoSch1,900 chainNeoSch1,995 chainNetNeoSch1,206 chainNetNeoSch1,217 chainNetNeoSch1,228 chainNetNeoSch1,331 chainNetNeoSch1,370 chainNetNeoSch1,403 chainNetNeoSch1,408 chainNetNeoSch1,430 chainNetNeoSch1,442 chainNetNeoSch1,449 chainNetNeoSch1,506 chainNetNeoSch1,678 chainNetNeoSch1,693 chainNetNeoSch1,707 chainNetNeoSch1,776 chainNetNeoSch1,797 chainNetNeoSch1,812 chainNetNeoSch1,872 chainNetNeoSch1,903 chainNetNeoSch1,998 chainNetRn6,198 chainNetRn6,209 chainNetRn6,220 chainNetRn6,320 chainNetRn6,359 chainNetRn6,392 chainNetRn6,397 chainNetRn6,419 chainNetRn6,431 chainNetRn6,438 chainNetRn6,495 chainNetRn6,663 chainNetRn6,678 chainNetRn6,692 chainNetRn6,761 chainNetRn6,782 chainNetRn6,797 chainNetRn6,857 chainNetRn6,888 chainNetRn6,983 chainRn6,195 chainRn6,206 chainRn6,217 chainRn6,317 chainRn6,356 chainRn6,389 chainRn6,394 chainRn6,416 chainRn6,428 chainRn6,435 chainRn6,492 chainRn6,660 chainRn6,675 chainRn6,689 chainRn6,758 chainRn6,779 chainRn6,794 chainRn6,854 chainRn6,885 chainRn6,980 netNeoSch1,203 netNeoSch1,214 netNeoSch1,225 netNeoSch1,328 netNeoSch1,367 netNeoSch1,400 netNeoSch1,405 netNeoSch1,427 netNeoSch1,439 netNeoSch1,446 netNeoSch1,503 netNeoSch1,675 netNeoSch1,690 netNeoSch1,704 netNeoSch1,773 netNeoSch1,794 netNeoSch1,809 netNeoSch1,869 netNeoSch1,900 netNeoSch1,995 netRn6,195 netRn6,206 netRn6,217 netRn6,317 netRn6,356 netRn6,389 netRn6,394 netRn6,416 netRn6,428 netRn6,435 netRn6,492 netRn6,660 netRn6,675 netRn6,689 netRn6,758 netRn6,779 netRn6,794 netRn6,854 netRn6,885 netRn6,980 transMapEnsemblV5,80 transMapEnsemblV5,197 transMapEnsemblV5,210 transMapEnsemblV5,256 transMapEnsemblV5,281 transMapEnsemblV5,329 transMapEnsemblV5,510 transMapEstV5,49 transMapEstV5,166 transMapEstV5,179 transMapEstV5,225 transMapEstV5,250 transMapEstV5,298 transMapEstV5,479 transMapRefSeqV5,49 transMapRefSeqV5,166 transMapRefSeqV5,179 transMapRefSeqV5,225 transMapRefSeqV5,250 transMapRefSeqV5,298 transMapRefSeqV5,479 transMapRnaV5,49 transMapRnaV5,166 transMapRnaV5,179 transMapRnaV5,225 transMapRnaV5,250 transMapRnaV5,298 transMapRnaV5,479 transMapV5,50 transMapV5,86 transMapV5,272 transMapV5,285 transMapV5,331 transMapV5,356 transMapV5,404 transMapV5,585 unipChain,1 unipChain,7 uniprot,288 change cpgIslandExt,210 cpgIslandExtUnmasked,213 cpgIslandSuper,210 est,122 intronEst,203 mrna,68 changed rmsk,285 uniprot,1382 characteristic est,327 intronEst,408 mrna,273 check chainNeoSch1,350 chainNetNeoSch1,353 chainNetRn6,342 chainRn6,339 netNeoSch1,350 netRn6,339 checkbox uniprot,231 chen ensGene,176 chiaromonte chainNeoSch1,1040 chainNetNeoSch1,1043 chainNetRn6,1028 chainRn6,1025 netNeoSch1,1040 netRn6,1025 chicken augustusGene,204 augustusGene,262 chmod uniprot,1921 choose augustusGene,171 cpgIslandExt,581 cpgIslandExtUnmasked,584 cpgIslandSuper,581 est,283 est,322 intronEst,364 intronEst,403 mrna,229 mrna,268 uniprot,657 chosen est,345 intronEst,426 mrna,291 chr4 chainNeoSch1,382 chainNetNeoSch1,385 chainNetRn6,374 chainRn6,371 netNeoSch1,382 netRn6,371 chr6 transMapEnsemblV5,667 transMapEstV5,636 transMapRefSeqV5,636 transMapRnaV5,636 transMapV5,742 uniprot,1820 chris genscan,21 genscan,172 uniprot,1954 chrm gold,158 chrom transMapEnsemblV5,666 transMapEstV5,635 transMapRefSeqV5,635 transMapRnaV5,635 transMapV5,741 uniprot,1819 chromosome chainNeoSch1,255 chainNeoSch1,337 chainNeoSch1,362 chainNeoSch1,370 chainNeoSch1,380 chainNeoSch1,389 chainNeoSch1,536 chainNeoSch1,551 chainNeoSch1,567 chainNeoSch1,639 chainNeoSch1,644 chainNetNeoSch1,258 chainNetNeoSch1,340 chainNetNeoSch1,365 chainNetNeoSch1,373 chainNetNeoSch1,383 chainNetNeoSch1,392 chainNetNeoSch1,539 chainNetNeoSch1,554 chainNetNeoSch1,570 chainNetNeoSch1,642 chainNetNeoSch1,647 chainNetRn6,250 chainNetRn6,329 chainNetRn6,354 chainNetRn6,362 chainNetRn6,372 chainNetRn6,381 chainNetRn6,528 chainNetRn6,543 chainNetRn6,559 chainNetRn6,627 chainNetRn6,632 chainRn6,247 chainRn6,326 chainRn6,351 chainRn6,359 chainRn6,369 chainRn6,378 chainRn6,525 chainRn6,540 chainRn6,556 chainRn6,624 chainRn6,629 cytoBandIdeo,1 gap,129 netNeoSch1,255 netNeoSch1,337 netNeoSch1,362 netNeoSch1,370 netNeoSch1,380 netNeoSch1,389 netNeoSch1,536 netNeoSch1,551 netNeoSch1,567 netNeoSch1,639 netNeoSch1,644 netRn6,247 netRn6,326 netRn6,351 netRn6,359 netRn6,369 netRn6,378 netRn6,525 netRn6,540 netRn6,556 netRn6,624 netRn6,629 ucscToINSDC,20 uniprot,1416 chromosome-based chainNeoSch1,330 chainNetNeoSch1,333 chainNetRn6,322 chainRn6,319 netNeoSch1,330 netRn6,319 circle rmsk,202 cited cpgIslandExt,374 cpgIslandExtUnmasked,377 cpgIslandSuper,374 cl transMapEnsemblV5,723 transMapEstV5,692 transMapRefSeqV5,692 transMapRnaV5,692 transMapV5,798 clark ensGene,178 est,747 intronEst,831 mrna,464 class rmsk,199 rmsk,253 classes rmsk,150 classification rmsk,266 rmsk,282 clawson gc5BaseBw,83 ucscToINSDC,52 cleaved uniprot,249 click chainNeoSch1,463 chainNeoSch1,477 chainNetNeoSch1,466 chainNetNeoSch1,480 chainNetRn6,455 chainNetRn6,469 chainRn6,452 chainRn6,466 gc5BaseBw,56 netNeoSch1,463 netNeoSch1,477 netRn6,452 netRn6,466 refGene,142 refGene,246 transMapEnsemblV5,135 transMapEnsemblV5,149 transMapEstV5,104 transMapEstV5,118 transMapRefSeqV5,104 transMapRefSeqV5,118 transMapRnaV5,104 transMapRnaV5,118 transMapV5,210 transMapV5,224 uniprot,229 uniprot,481 uniprot,1673 xenoRefGene,108 xenoRefGene,212 clicking uniprot,1633 clipped nestedRepeats,224 cloned est,463 intronEst,544 closer transMapEnsemblV5,68 transMapEstV5,37 transMapRefSeqV5,37 transMapRnaV5,37 transMapV5,36 closest augustusGene,241 cm refGene,365 xenoRefGene,330 code transMapEnsemblV5,621 transMapEnsemblV5,635 transMapEstV5,590 transMapEstV5,604 transMapRefSeqV5,590 transMapRefSeqV5,604 transMapRnaV5,590 transMapRnaV5,604 transMapV5,696 transMapV5,710 uniprot,1546 uniprot,1775 uniprot,1789 windowmaskerSdust,34 coding refGene,244 simpleRepeat,38 uniprot,1102 uniprot,1133 xenoRefGene,210 codon genscan,100 genscan,122 mrna,329 mrna,354 refGene,170 refGene,177 refGene,192 refGene,222 transMapEnsemblV5,113 transMapEstV5,82 transMapRefSeqV5,82 transMapRnaV5,82 transMapV5,188 xenoRefGene,136 xenoRefGene,143 xenoRefGene,158 xenoRefGene,188 codons genscan,89 genscan,93 refGene,197 refGene,204 xenoRefGene,163 xenoRefGene,170 cognate transMapEnsemblV5,179 transMapEstV5,148 transMapRefSeqV5,148 transMapRnaV5,148 transMapV5,254 coiled-coil uniprot,367 collaboration ucscToINSDC,9 ucscToINSDC,31 collapsed nestedRepeats,173 collection refGene,28 xenoRefGene,31 color chainNeoSch1,358 chainNetNeoSch1,361 chainNetRn6,350 chainRn6,347 est,128 est,324 genscan,86 genscan,96 intronEst,209 intronEst,405 mrna,74 mrna,270 netNeoSch1,358 netRn6,347 refGene,90 refGene,201 rmsk,207 xenoRefGene,56 xenoRefGene,167 coloration gold,93 colored chainNeoSch1,333 chainNetNeoSch1,336 chainNetRn6,325 chainRn6,322 est,431 intronEst,512 mrna,370 netNeoSch1,333 netRn6,322 transMapEnsemblV5,145 transMapEstV5,114 transMapRefSeqV5,114 transMapRnaV5,114 transMapV5,220 uniprot,160 uniprot,176 coloring chainNeoSch1,349 chainNetNeoSch1,352 chainNetRn6,341 chainRn6,338 est,418 genscan,116 intronEst,499 mrna,330 mrna,357 netNeoSch1,349 netRn6,338 refGene,171 refGene,178 refGene,216 transMapEnsemblV5,114 transMapEstV5,83 transMapRefSeqV5,83 transMapRnaV5,83 transMapV5,189 xenoRefGene,137 xenoRefGene,144 xenoRefGene,182 colors refGene,113 refGene,193 xenoRefGene,79 xenoRefGene,159 column nestedRepeats,107 columns transMapEnsemblV5,550 transMapEstV5,519 transMapRefSeqV5,519 transMapRnaV5,519 transMapV5,625 combination est,286 intronEst,367 mrna,232 combined rmsk,232 command cpgIslandExt,409 cpgIslandExt,503 cpgIslandExtUnmasked,412 cpgIslandExtUnmasked,506 cpgIslandSuper,409 cpgIslandSuper,503 transMapEnsemblV5,254 transMapEstV5,223 transMapRefSeqV5,223 transMapRnaV5,223 transMapV5,329 uniprot,1871 uniprot,1875 commands uniprot,1902 comment uniprot,260 uniprot,282 uniprot,531 uniprot,615 common cpgIslandExt,30 cpgIslandExtUnmasked,33 cpgIslandSuper,30 comparative chainNeoSch1,14 chainNetNeoSch1,17 chainNetNeoSch1Viewchain,13 chainNetNeoSch1Viewnet,13 chainNetRn6,14 chainNetRn6Viewchain,12 chainNetRn6Viewnet,12 chainRn6,11 netNeoSch1,14 netRn6,11 transMapEnsemblV5,741 transMapEnsemblV5,796 transMapEstV5,710 transMapEstV5,765 transMapRefSeqV5,710 transMapRefSeqV5,765 transMapRnaV5,710 transMapRnaV5,765 transMapV5,816 transMapV5,871 compare mrna,339 refGene,187 transMapEnsemblV5,123 transMapEstV5,92 transMapRefSeqV5,92 transMapRnaV5,92 transMapV5,198 xenoRefGene,153 compared transMapV5,153 comparison genscan,109 uniprot,1260 compiled transMapEnsemblV5,617 transMapEstV5,586 transMapRefSeqV5,586 transMapRnaV5,586 transMapV5,692 uniprot,1771 complete genscan,213 completely refGene,169 uniprot,1464 xenoRefGene,135 complex chainNeoSch1,171 chainNetNeoSch1,174 chainNetRn6,166 chainRn6,163 netNeoSch1,171 netRn6,163 complexity nestedRepeats,40 rmsk,30 rmsk,182 component gold,135 composed uniprot,1396 compositional genscan,41 uniprot,399 comput transMapEnsemblV5,809 transMapEstV5,778 transMapRefSeqV5,778 transMapRnaV5,778 transMapV5,884 computational genscan,196 uniprot,51 computed transMapEnsemblV5,226 transMapEstV5,195 transMapRefSeqV5,195 transMapRnaV5,195 transMapV5,301 comstock transMapEnsemblV5,722 transMapEstV5,691 transMapRefSeqV5,691 transMapRnaV5,691 transMapV5,797 concerning refGene,60 conditional augustusGene,118 configuration chainNeoSch1,322 chainNetNeoSch1,325 chainNetRn6,314 chainRn6,311 est,46 gc5BaseBw,60 gc5BaseBw,69 genscan,64 genscan,84 intronEst,130 mrna,27 nestedRepeats,114 netNeoSch1,322 netRn6,311 refGene,78 rmsk,138 transMapEnsemblV5,94 transMapEstV5,63 transMapRefSeqV5,63 transMapRnaV5,63 transMapV5,169 uniprot,235 uniprot,449 uniprot,650 uniprot,1755 xenoRefGene,44 configured est,380 gc5BaseBw,42 intronEst,461 mrna,326 refGene,121 transMapEnsemblV5,110 transMapEstV5,79 transMapRefSeqV5,79 transMapRnaV5,79 transMapV5,185 xenoRefGene,87 conflicts unipConflict,2 unipConflict,5 uniprot,373 connect uniprot,1677 conservation transMapEnsemblV5,230 transMapEstV5,199 transMapRefSeqV5,199 transMapRnaV5,199 transMapV5,305 considerable est,637 intronEst,718 considered intronEst,57 consistency uniprot,402 consortium uniprot,1986 constructed cpgIslandExt,322 cpgIslandExt,495 cpgIslandExtUnmasked,325 cpgIslandExtUnmasked,498 cpgIslandSuper,322 cpgIslandSuper,495 construction cpgIslandExt,311 cpgIslandExtUnmasked,314 cpgIslandSuper,311 consult est,217 intronEst,298 mrna,163 contact uniprot,686 uniprot,1440 contain transMapV5,14 uniprot,1163 contained chainNeoSch1,901 chainNetNeoSch1,904 chainNetRn6,889 chainRn6,886 netNeoSch1,901 netRn6,886 containing transMapEnsemblV5,545 transMapEstV5,514 transMapRefSeqV5,514 transMapRnaV5,514 transMapV5,620 contains est,242 gap,117 intronEst,323 mrna,188 refGene,174 transMapEnsemblV5,17 transMapEstV5,15 transMapRefSeqV5,16 transMapRnaV5,16 xenoRefGene,140 contamination est,625 intronEst,97 intronEst,706 content augustusGene,71 cpgIslandExt,263 cpgIslandExtUnmasked,266 cpgIslandSuper,263 gc5BaseBw,31 contig gold,81 contigs gap,84 gold,73 gold,98 gold,115 controls cpgIslandExt,217 cpgIslandExtUnmasked,220 cpgIslandSuper,217 refGene,124 xenoRefGene,90 convenience uniprot,404 conventions chainNeoSch1,320 chainNetNeoSch1,323 chainNetRn6,312 chainRn6,309 est,44 est,52 genscan,62 genscan,70 intronEst,128 intronEst,136 mrna,25 mrna,33 nestedRepeats,112 netNeoSch1,320 netRn6,309 refGene,76 refGene,84 rmsk,136 transMapEnsemblV5,92 transMapEnsemblV5,100 transMapEstV5,61 transMapEstV5,69 transMapRefSeqV5,61 transMapRefSeqV5,69 transMapRnaV5,61 transMapRnaV5,69 transMapV5,167 transMapV5,175 uniprot,447 xenoRefGene,42 xenoRefGene,50 converted chainNeoSch1,614 chainNetNeoSch1,617 chainNetRn6,604 chainRn6,601 netNeoSch1,614 netRn6,601 uniprot,1477 uniprot,1760 coordinates uniprot,29 uniprot,643 uniprot,1848 uniprot,1855 uniprot,1886 uniprot,1892 copies microsat,80 copy uniprot,419 correct uniprot,962 uniprot,1222 corrections refGene,55 corresponding transMapEnsemblV5,257 transMapEstV5,226 transMapRefSeqV5,226 transMapRnaV5,226 transMapV5,332 corresponds est,225 intronEst,306 mrna,171 count cpgIslandExt,334 cpgIslandExt,357 cpgIslandExtUnmasked,337 cpgIslandExtUnmasked,360 cpgIslandSuper,334 cpgIslandSuper,357 gap,131 counts gold,142 cover est,558 intronEst,639 coverage uniprot,1485 covered chainNeoSch1,824 chainNetNeoSch1,827 chainNetRn6,812 chainRn6,809 gap,24 gold,26 netNeoSch1,824 netRn6,809 cow transMapEnsemblV5,448 transMapEstV5,417 transMapRefSeqV5,417 transMapRnaV5,417 transMapV5,523 cox ensGene,180 cpg cpgIslandExt,1 cpgIslandExt,3 cpgIslandExt,15 cpgIslandExt,26 cpgIslandExt,55 cpgIslandExt,147 cpgIslandExt,176 cpgIslandExt,225 cpgIslandExt,316 cpgIslandExt,319 cpgIslandExt,333 cpgIslandExt,346 cpgIslandExt,351 cpgIslandExt,356 cpgIslandExt,367 cpgIslandExt,382 cpgIslandExt,385 cpgIslandExt,506 cpgIslandExt,608 cpgIslandExtUnmasked,2 cpgIslandExtUnmasked,3 cpgIslandExtUnmasked,18 cpgIslandExtUnmasked,29 cpgIslandExtUnmasked,58 cpgIslandExtUnmasked,150 cpgIslandExtUnmasked,179 cpgIslandExtUnmasked,228 cpgIslandExtUnmasked,319 cpgIslandExtUnmasked,322 cpgIslandExtUnmasked,336 cpgIslandExtUnmasked,349 cpgIslandExtUnmasked,354 cpgIslandExtUnmasked,359 cpgIslandExtUnmasked,370 cpgIslandExtUnmasked,385 cpgIslandExtUnmasked,388 cpgIslandExtUnmasked,509 cpgIslandExtUnmasked,611 cpgIslandSuper,1 cpgIslandSuper,3 cpgIslandSuper,15 cpgIslandSuper,26 cpgIslandSuper,55 cpgIslandSuper,147 cpgIslandSuper,176 cpgIslandSuper,225 cpgIslandSuper,316 cpgIslandSuper,319 cpgIslandSuper,333 cpgIslandSuper,346 cpgIslandSuper,351 cpgIslandSuper,356 cpgIslandSuper,367 cpgIslandSuper,382 cpgIslandSuper,385 cpgIslandSuper,506 cpgIslandSuper,608 cpg_lh cpgIslandExt,418 cpgIslandExt,558 cpgIslandExt,568 cpgIslandExt,580 cpgIslandExtUnmasked,421 cpgIslandExtUnmasked,561 cpgIslandExtUnmasked,571 cpgIslandExtUnmasked,583 cpgIslandSuper,418 cpgIslandSuper,558 cpgIslandSuper,568 cpgIslandSuper,580 cpg_lh.err cpgIslandExt,423 cpgIslandExtUnmasked,426 cpgIslandSuper,423 cpgisland.bed cpgIslandExt,489 cpgIslandExtUnmasked,492 cpgIslandSuper,489 cpgislandext cpgIslandExt,566 cpgIslandExtUnmasked,569 cpgIslandSuper,566 cpgs cpgIslandExt,115 cpgIslandExt,152 cpgIslandExtUnmasked,118 cpgIslandExtUnmasked,155 cpgIslandSuper,115 cpgIslandSuper,152 create windowmaskerSdust,48 created chainNeoSch1,999 chainNetNeoSch1,1002 chainNetRn6,987 chainRn6,984 microsat,89 netNeoSch1,999 netRn6,984 rmsk,13 transMapEnsemblV5,74 transMapEstV5,43 transMapRefSeqV5,43 transMapRnaV5,43 transMapV5,42 uniprot,824 uniprot,1942 creates chainNeoSch1,649 chainNetNeoSch1,652 chainNetRn6,637 chainRn6,634 netNeoSch1,649 netRn6,634 credits augustusGene,247 chainNeoSch1,925 chainNetNeoSch1,928 chainNetRn6,913 chainRn6,910 cpgIslandExt,584 cpgIslandExtUnmasked,587 cpgIslandSuper,584 ensGene,145 est,721 gc5BaseBw,71 genscan,169 intronEst,805 microsat,104 mrna,437 nestedRepeats,302 netNeoSch1,925 netRn6,910 refGene,311 rmsk,325 simpleRepeat,66 transMapEnsemblV5,673 transMapEstV5,642 transMapRefSeqV5,642 transMapRnaV5,642 transMapV5,748 ucscToINSDC,42 uniprot,1938 xenoRefGene,277 criteria cpgIslandExt,261 cpgIslandExtUnmasked,264 cpgIslandSuper,261 est,300 est,318 est,356 est,374 intronEst,381 intronEst,399 intronEst,437 intronEst,455 mrna,246 mrna,264 mrna,302 mrna,320 transMapEnsemblV5,356 transMapEstV5,325 transMapRefSeqV5,325 transMapRnaV5,325 transMapV5,431 cross-species transMapEnsemblV5,26 transMapEstV5,24 transMapRefSeqV5,24 transMapRnaV5,24 transMapV5,23 cruz chainNeoSch1,975 chainNeoSch1,1020 chainNetNeoSch1,978 chainNetNeoSch1,1023 chainNetRn6,963 chainNetRn6,1008 chainRn6,960 chainRn6,1005 netNeoSch1,975 netNeoSch1,1020 netRn6,960 netRn6,1005 cs cpgIslandExt,63 cpgIslandExt,101 cpgIslandExt,296 cpgIslandExtUnmasked,66 cpgIslandExtUnmasked,104 cpgIslandExtUnmasked,299 cpgIslandSuper,63 cpgIslandSuper,101 cpgIslandSuper,296 cuff ensGene,182 culex augustusGene,220 curated refGene,327 refGene,405 uniprot,35 uniprot,110 uniprot,142 xenoRefGene,293 xenoRefGene,370 curator rmsk,261 curr nestedRepeats,384 nestedRepeats,406 rmsk,407 rmsk,429 current est,160 intronEst,241 mrna,106 nestedRepeats,250 uniprot,1296 uniprot,1575 uniprot,1692 uniprot,1712 currently gold,78 curwen ensGene,184 cytoplamsic uniprot,518 cytoplasmic unipLocCytopl,1 unipLocCytopl,3 uniprot,276 uniprot,284 uniprot,569 cytosine cpgIslandExt,45 cpgIslandExtUnmasked,48 cpgIslandSuper,45 gc5BaseBw,24 d augustusGene,293 chainNeoSch1,1067 chainNeoSch1,1111 chainNetNeoSch1,1070 chainNetNeoSch1,1114 chainNetRn6,1055 chainNetRn6,1099 chainRn6,1052 chainRn6,1096 cpgIslandExt,438 cpgIslandExtUnmasked,441 cpgIslandSuper,438 ensGene,171 genscan,192 netNeoSch1,1067 netNeoSch1,1111 netRn6,1052 netRn6,1096 transMapEnsemblV5,761 transMapEnsemblV5,795 transMapEstV5,730 transMapEstV5,764 transMapRefSeqV5,730 transMapRefSeqV5,764 transMapRnaV5,730 transMapRnaV5,764 transMapV5,836 transMapV5,870 d23-6 est,792 intronEst,876 mrna,509 d36-42 est,766 intronEst,850 mrna,483 d501-4 refGene,423 xenoRefGene,388 d71-5 uniprot,2005 d756-63 refGene,389 xenoRefGene,354 da est,744 est,772 intronEst,828 intronEst,856 mrna,461 mrna,489 dark refGene,107 unipAliSwissprot,10 uniprot,162 uniprot,582 uniprot,587 xenoRefGene,73 darker intronEst,145 darkly est,66 mrna,47 data cpgIslandExt,403 cpgIslandExt,493 cpgIslandExt,504 cpgIslandExt,525 cpgIslandExtUnmasked,406 cpgIslandExtUnmasked,496 cpgIslandExtUnmasked,507 cpgIslandExtUnmasked,528 cpgIslandSuper,403 cpgIslandSuper,493 cpgIslandSuper,504 cpgIslandSuper,525 ensGene,55 ensGene,59 ensGene,70 ensGene,102 est,731 gap,96 gc5BaseBw,73 intronEst,815 microsat,47 mrna,448 nestedRepeats,263 nestedRepeats,280 refGene,31 refGene,321 rmsk,126 rmsk,287 transMapEnsemblV5,515 transMapEnsemblV5,519 transMapEnsemblV5,533 transMapEnsemblV5,570 transMapEnsemblV5,574 transMapEnsemblV5,688 transMapEstV5,484 transMapEstV5,488 transMapEstV5,502 transMapEstV5,539 transMapEstV5,543 transMapEstV5,657 transMapRefSeqV5,484 transMapRefSeqV5,488 transMapRefSeqV5,502 transMapRefSeqV5,539 transMapRefSeqV5,543 transMapRefSeqV5,657 transMapRnaV5,484 transMapRnaV5,488 transMapRnaV5,502 transMapRnaV5,539 transMapRnaV5,543 transMapRnaV5,657 transMapV5,590 transMapV5,594 transMapV5,608 transMapV5,645 transMapV5,649 transMapV5,763 ucscToINSDC,34 ucscToINSDC,44 uniprot,32 uniprot,45 uniprot,892 uniprot,895 uniprot,1683 uniprot,1705 uniprot,1709 uniprot,1724 uniprot,1837 uniprot,1980 xenoRefGene,34 xenoRefGene,287 database chainNeoSch1,991 chainNetNeoSch1,994 chainNetRn6,979 chainRn6,976 ensGene,193 est,764 est,790 intronEst,848 intronEst,874 mrna,481 mrna,507 nestedRepeats,345 netNeoSch1,991 netRn6,976 refGene,387 refGene,408 refGene,421 rmsk,125 rmsk,368 transMapEnsemblV5,165 transMapEstV5,134 transMapRefSeqV5,134 transMapRnaV5,134 transMapV5,240 ucscToINSDC,8 ucscToINSDC,30 ucscToINSDC,41 uniprot,25 uniprot,821 uniprot,2003 uniprot,2031 xenoRefGene,352 xenoRefGene,373 xenoRefGene,386 databases est,612 est,738 intronEst,101 intronEst,693 intronEst,822 mrna,455 transMapEnsemblV5,695 transMapEstV5,664 transMapRefSeqV5,664 transMapRnaV5,664 transMapV5,770 david chainNeoSch1,985 chainNetNeoSch1,988 chainNetRn6,973 chainRn6,970 netNeoSch1,985 netRn6,970 davis transMapEnsemblV5,724 transMapEstV5,693 transMapRefSeqV5,693 transMapRnaV5,693 transMapV5,799 de augustusGene,303 transMapEnsemblV5,771 transMapEstV5,740 transMapRefSeqV5,740 transMapRnaV5,740 transMapV5,846 deamination cpgIslandExt,110 cpgIslandExtUnmasked,113 cpgIslandSuper,110 dec nestedRepeats,389 nestedRepeats,411 rmsk,412 rmsk,434 transMapEnsemblV5,746 transMapEnsemblV5,812 transMapEstV5,715 transMapEstV5,781 transMapRefSeqV5,715 transMapRefSeqV5,781 transMapRnaV5,715 transMapRnaV5,781 transMapV5,821 transMapV5,887 default chainNeoSch1,326 chainNetNeoSch1,329 chainNetRn6,318 chainRn6,315 cpgIslandExt,195 cpgIslandExtUnmasked,198 cpgIslandSuper,195 netNeoSch1,326 netRn6,315 refGene,135 refGene,228 uniprot,225 xenoRefGene,101 xenoRefGene,194 defined uniprot,305 uniprot,1387 definition gap,39 gold,41 degraded est,527 intronEst,608 degree est,622 intronEst,703 deletion chainNeoSch1,153 chainNeoSch1,1072 chainNetNeoSch1,156 chainNetNeoSch1,1075 chainNetRn6,150 chainNetRn6,1060 chainRn6,147 chainRn6,1057 est,440 intronEst,521 mrna,379 netNeoSch1,153 netNeoSch1,1072 netRn6,147 netRn6,1057 rmsk,220 deletions chainNeoSch1,121 chainNeoSch1,186 chainNetNeoSch1,124 chainNetNeoSch1,189 chainNetRn6,118 chainNetRn6,181 chainRn6,115 chainRn6,178 netNeoSch1,121 netNeoSch1,186 netRn6,115 netRn6,178 delivered gap,51 gold,50 dense est,58 gold,67 intronEst,142 mrna,39 nestedRepeats,157 nestedRepeats,168 dependencies genscan,183 depending uniprot,442 uniprot,808 depicts gold,71 windowmaskerSdust,15 deposited est,599 intronEst,680 deprecated uniprot,1044 derived chainNeoSch1,775 chainNetNeoSch1,778 chainNetRn6,763 chainRn6,760 netNeoSch1,775 netRn6,760 uniprot,830 described chainNeoSch1,782 chainNetNeoSch1,785 chainNetRn6,770 chainRn6,767 genscan,161 nestedRepeats,60 nestedRepeats,338 netNeoSch1,782 netRn6,767 rmsk,96 rmsk,361 uniprot,1524 describes augustusGene,226 gap,60 gold,59 description augustusGene,12 chainNeoSch1,16 chainNeoSch1,787 chainNetNeoSch1,19 chainNetNeoSch1,790 chainNetRn6,16 chainNetRn6,775 chainRn6,13 chainRn6,772 cpgIslandExt,14 cpgIslandExtUnmasked,17 cpgIslandSuper,14 ensGene,9 ensGene,32 est,10 est,109 gap,7 gc5BaseBw,11 genscan,10 genscan,77 genscan,133 gold,8 intronEst,12 intronEst,190 microsat,10 mrna,10 mrna,55 nestedRepeats,14 netNeoSch1,16 netNeoSch1,787 netRn6,13 netRn6,772 refGene,9 refGene,131 rmsk,9 simpleRepeat,11 transMapEnsemblV5,14 transMapEnsemblV5,232 transMapEstV5,12 transMapEstV5,201 transMapRefSeqV5,13 transMapRefSeqV5,201 transMapRnaV5,13 transMapRnaV5,201 transMapV5,11 transMapV5,307 ucscToINSDC,13 uniprot,11 uniprot,106 windowmaskerSdust,12 xenoRefGene,10 xenoRefGene,97 descriptions augustusGene,91 designed uniprot,1355 desired est,285 intronEst,366 mrna,231 destination transMapEnsemblV5,414 transMapEstV5,383 transMapRefSeqV5,383 transMapRnaV5,383 transMapV5,489 destined uniprot,244 destuniq transMapEnsemblV5,433 transMapEstV5,402 transMapRefSeqV5,402 transMapRnaV5,402 transMapV5,508 detail genscan,164 detailed augustusGene,90 chainNeoSch1,469 chainNeoSch1,488 chainNetNeoSch1,472 chainNetNeoSch1,491 chainNetRn6,461 chainNetRn6,480 chainRn6,458 chainRn6,477 nestedRepeats,70 netNeoSch1,469 netNeoSch1,488 netRn6,458 netRn6,477 rmsk,37 uniprot,692 details rmsk,119 transMapEnsemblV5,234 transMapEstV5,203 transMapRefSeqV5,203 transMapRnaV5,203 transMapV5,309 uniprot,499 uniprot,771 uniprot,1157 uniprot,1584 determination transMapEnsemblV5,272 transMapEstV5,241 transMapRefSeqV5,241 transMapRnaV5,241 transMapV5,347 determine transMapV5,90 determined windowmaskerSdust,19 determining chainNeoSch1,493 chainNetNeoSch1,496 chainNetRn6,485 chainRn6,482 netNeoSch1,493 netRn6,482 dev cpgIslandExt,419 cpgIslandExtUnmasked,422 cpgIslandSuper,419 nestedRepeats,387 nestedRepeats,409 rmsk,410 rmsk,432 developed chainNeoSch1,932 chainNeoSch1,967 chainNeoSch1,1013 chainNetNeoSch1,935 chainNetNeoSch1,970 chainNetNeoSch1,1016 chainNetRn6,920 chainNetRn6,955 chainNetRn6,1001 chainRn6,917 chainRn6,952 chainRn6,998 cpgIslandExt,595 cpgIslandExtUnmasked,598 cpgIslandSuper,595 netNeoSch1,932 netNeoSch1,967 netNeoSch1,1013 netRn6,917 netRn6,952 netRn6,998 dfam rmsk,112 di-nucleotide microsat,3 microsat,32 diekhans augustusGene,288 transMapEnsemblV5,680 transMapEnsemblV5,713 transMapEnsemblV5,756 transMapEnsemblV5,788 transMapEstV5,649 transMapEstV5,682 transMapEstV5,725 transMapEstV5,757 transMapRefSeqV5,649 transMapRefSeqV5,682 transMapRefSeqV5,725 transMapRefSeqV5,757 transMapRnaV5,649 transMapRnaV5,682 transMapRnaV5,725 transMapRnaV5,757 transMapV5,755 transMapV5,788 transMapV5,831 transMapV5,863 uniprot,1540 uniprot,1957 diemand uniprot,2014 differ est,403 intronEst,484 uniprot,746 uniprot,1131 difference uniprot,1251 differences uniprot,374 uniprot,921 uniprot,1370 different augustusGene,39 augustusGene,85 augustusGene,96 augustusGene,144 augustusGene,155 augustusGene,179 augustusGene,193 chainNeoSch1,568 chainNetNeoSch1,571 chainNetRn6,560 chainRn6,557 ensGene,22 gc5BaseBw,50 genscan,54 netNeoSch1,568 netRn6,557 refGene,68 rmsk,149 uniprot,634 difficult transMapEnsemblV5,276 transMapEstV5,245 transMapRefSeqV5,245 transMapRnaV5,245 transMapV5,351 dinucleotide cpgIslandExt,240 cpgIslandExtUnmasked,243 cpgIslandSuper,240 dinucleotides cpgIslandExt,282 cpgIslandExt,340 cpgIslandExtUnmasked,285 cpgIslandExtUnmasked,343 cpgIslandSuper,282 cpgIslandSuper,340 direction est,78 est,96 intronEst,159 intronEst,177 directly cpgIslandExt,534 cpgIslandExtUnmasked,537 cpgIslandSuper,534 ensGene,111 uniprot,993 directory ensGene,86 ensGene,94 rmsk,134 discarded chainNeoSch1,701 chainNetNeoSch1,704 chainNetRn6,689 chainRn6,686 netNeoSch1,701 netRn6,686 refGene,269 transMapEnsemblV5,380 transMapEstV5,349 transMapRefSeqV5,349 transMapRnaV5,349 transMapV5,455 xenoRefGene,235 discovery transMapEnsemblV5,735 transMapEstV5,704 transMapRefSeqV5,704 transMapRnaV5,704 transMapV5,810 discussion nestedRepeats,364 rmsk,387 disease uniprot,545 uniprot,616 diseases simpleRepeat,54 display chainNeoSch1,247 chainNeoSch1,319 chainNeoSch1,364 chainNeoSch1,394 chainNeoSch1,453 chainNeoSch1,482 chainNeoSch1,511 chainNeoSch1,989 chainNetNeoSch1,250 chainNetNeoSch1,322 chainNetNeoSch1,367 chainNetNeoSch1,397 chainNetNeoSch1,456 chainNetNeoSch1,485 chainNetNeoSch1,514 chainNetNeoSch1,992 chainNetRn6,242 chainNetRn6,311 chainNetRn6,356 chainNetRn6,386 chainNetRn6,445 chainNetRn6,474 chainNetRn6,503 chainNetRn6,977 chainRn6,239 chainRn6,308 chainRn6,353 chainRn6,383 chainRn6,442 chainRn6,471 chainRn6,500 chainRn6,974 est,43 est,51 est,59 est,124 est,151 est,181 est,326 est,350 est,366 est,382 est,392 est,441 genscan,61 genscan,69 genscan,104 gold,130 intronEst,116 intronEst,127 intronEst,135 intronEst,143 intronEst,205 intronEst,232 intronEst,262 intronEst,407 intronEst,431 intronEst,447 intronEst,463 intronEst,473 intronEst,522 mrna,24 mrna,32 mrna,40 mrna,70 mrna,97 mrna,127 mrna,272 mrna,296 mrna,312 mrna,328 mrna,380 nestedRepeats,111 netNeoSch1,247 netNeoSch1,319 netNeoSch1,364 netNeoSch1,394 netNeoSch1,453 netNeoSch1,482 netNeoSch1,511 netNeoSch1,989 netRn6,239 netRn6,308 netRn6,353 netRn6,383 netRn6,442 netRn6,471 netRn6,500 netRn6,974 refGene,75 refGene,83 refGene,112 refGene,148 refGene,191 rmsk,135 rmsk,141 rmsk,212 transMapEnsemblV5,91 transMapEnsemblV5,99 transMapEnsemblV5,112 transMapEstV5,60 transMapEstV5,68 transMapEstV5,81 transMapRefSeqV5,60 transMapRefSeqV5,68 transMapRefSeqV5,81 transMapRnaV5,60 transMapRnaV5,68 transMapRnaV5,81 transMapV5,166 transMapV5,174 transMapV5,187 uniprot,446 xenoRefGene,41 xenoRefGene,49 xenoRefGene,78 xenoRefGene,114 xenoRefGene,157 displayed chainNeoSch1,430 chainNeoSch1,527 chainNeoSch1,706 chainNetNeoSch1,433 chainNetNeoSch1,530 chainNetNeoSch1,709 chainNetRn6,422 chainNetRn6,519 chainNetRn6,694 chainRn6,419 chainRn6,516 chainRn6,691 cpgIslandExt,204 cpgIslandExtUnmasked,207 cpgIslandSuper,204 gc5BaseBw,54 intronEst,801 nestedRepeats,124 nestedRepeats,217 netNeoSch1,430 netNeoSch1,527 netNeoSch1,706 netRn6,419 netRn6,516 netRn6,691 refGene,236 xenoRefGene,202 displays chainNeoSch1,128 chainNetNeoSch1,131 chainNetRn6,125 chainRn6,122 cpgIslandExt,174 cpgIslandExtUnmasked,177 cpgIslandSuper,174 microsat,13 netNeoSch1,128 netRn6,122 rmsk,145 simpleRepeat,14 dissertation augustusGene,105 distance transMapEnsemblV5,219 transMapEstV5,188 transMapRefSeqV5,188 transMapRnaV5,188 transMapV5,294 distances transMapEnsemblV5,70 transMapEstV5,39 transMapRefSeqV5,39 transMapRnaV5,39 transMapV5,38 distant est,582 intronEst,663 transMapEnsemblV5,268 transMapEstV5,237 transMapRefSeqV5,237 transMapRnaV5,237 transMapV5,63 transMapV5,343 distinguish cpgIslandExt,75 cpgIslandExtUnmasked,78 cpgIslandSuper,75 distinguished gold,84 distributions augustusGene,83 genscan,42 disulf unipDisulfBond,1 uniprot,472 disulfide unipDisulfBond,4 uniprot,333 uniprot,335 diverged chainNeoSch1,924 chainNetNeoSch1,927 chainNetRn6,912 chainRn6,909 nestedRepeats,212 netNeoSch1,924 netRn6,909 transMapV5,151 divided uniprot,56 dj est,752 est,776 intronEst,836 intronEst,860 mrna,469 mrna,493 dl est,780 intronEst,864 mrna,497 dna chainNeoSch1,1033 chainNetNeoSch1,1036 chainNetRn6,1021 chainRn6,1018 cpgIslandExt,60 cpgIslandExt,79 cpgIslandExt,92 cpgIslandExtUnmasked,63 cpgIslandExtUnmasked,82 cpgIslandExtUnmasked,95 cpgIslandSuper,60 cpgIslandSuper,79 cpgIslandSuper,92 genscan,219 microsat,123 nestedRepeats,33 nestedRepeats,41 netNeoSch1,1033 netRn6,1018 rmsk,23 rmsk,31 rmsk,174 rmsk,177 rmsk,257 simpleRepeat,83 do cpgIslandExt,140 cpgIslandExtUnmasked,143 cpgIslandSuper,140 transMapEnsemblV5,317 transMapEstV5,286 transMapRefSeqV5,286 transMapRnaV5,286 transMapV5,392 uniprot,168 uniprot,1129 doc rmsk,132 document gap,57 gold,56 documentation gap,29 gold,31 dollar cpgIslandExt,425 cpgIslandExt,427 cpgIslandExt,431 cpgIslandExt,433 cpgIslandExt,457 cpgIslandExt,459 cpgIslandExt,461 cpgIslandExt,463 cpgIslandExt,465 cpgIslandExt,468 cpgIslandExt,471 cpgIslandExt,476 cpgIslandExt,479 cpgIslandExt,481 cpgIslandExtUnmasked,428 cpgIslandExtUnmasked,430 cpgIslandExtUnmasked,434 cpgIslandExtUnmasked,436 cpgIslandExtUnmasked,460 cpgIslandExtUnmasked,462 cpgIslandExtUnmasked,464 cpgIslandExtUnmasked,466 cpgIslandExtUnmasked,468 cpgIslandExtUnmasked,471 cpgIslandExtUnmasked,474 cpgIslandExtUnmasked,479 cpgIslandExtUnmasked,482 cpgIslandExtUnmasked,484 cpgIslandSuper,425 cpgIslandSuper,427 cpgIslandSuper,431 cpgIslandSuper,433 cpgIslandSuper,457 cpgIslandSuper,459 cpgIslandSuper,461 cpgIslandSuper,463 cpgIslandSuper,465 cpgIslandSuper,468 cpgIslandSuper,471 cpgIslandSuper,476 cpgIslandSuper,479 cpgIslandSuper,481 domain unipLocExtra,4 domains unipDomain,1 unipDomain,3 unipLocCytopl,4 unipLocTransMemb,4 uniprot,255 uniprot,257 uniprot,266 uniprot,268 uniprot,277 uniprot,279 uniprot,323 uniprot,325 uniprot,331 uniprot,391 uniprot,514 uniprot,516 uniprot,519 uniprot,550 done augustusGene,265 augustusGene,281 donor genscan,31 double chainNeoSch1,136 chainNeoSch1,167 chainNetNeoSch1,139 chainNetNeoSch1,170 chainNetRn6,133 chainNetRn6,162 chainRn6,130 chainRn6,159 netNeoSch1,136 netNeoSch1,167 netRn6,130 netRn6,159 double-lined chainNeoSch1,227 chainNetNeoSch1,230 chainNetRn6,222 chainRn6,219 netNeoSch1,227 netRn6,219 double-sided chainNeoSch1,110 chainNetNeoSch1,113 chainNetRn6,107 chainRn6,104 netNeoSch1,110 netRn6,104 down ensGene,186 download ensGene,93 ensGene,143 transMapEnsemblV5,557 transMapEstV5,526 transMapRefSeqV5,526 transMapRnaV5,526 transMapV5,632 uniprot,1744 uniprot,1983 downloaded transMapEnsemblV5,554 transMapEnsemblV5,623 transMapEstV5,523 transMapEstV5,592 transMapRefSeqV5,523 transMapRefSeqV5,592 transMapRnaV5,523 transMapRnaV5,592 transMapV5,629 transMapV5,698 ucscToINSDC,36 uniprot,1741 uniprot,1777 downloading transMapEnsemblV5,633 transMapEstV5,602 transMapRefSeqV5,602 transMapRnaV5,602 transMapV5,708 uniprot,1787 downloads ensGene,74 ensGene,85 rmsk,76 uniprot,1698 dr refGene,399 xenoRefGene,364 drastically intronEst,103 drawn gap,107 gold,126 draws uniprot,1532 drosophila augustusGene,213 due chainNeoSch1,150 chainNeoSch1,220 chainNeoSch1,232 chainNetNeoSch1,153 chainNetNeoSch1,223 chainNetNeoSch1,235 chainNetRn6,147 chainNetRn6,215 chainNetRn6,227 chainRn6,144 chainRn6,212 chainRn6,224 netNeoSch1,150 netNeoSch1,220 netNeoSch1,232 netRn6,144 netRn6,212 netRn6,224 uniprot,848 uniprot,919 uniprot,1368 duplicate uniprot,594 duplication chainNeoSch1,1071 chainNetNeoSch1,1074 chainNetRn6,1059 chainRn6,1056 cpgIslandExt,95 cpgIslandExtUnmasked,98 cpgIslandSuper,95 netNeoSch1,1071 netRn6,1056 duplications transMapEnsemblV5,310 transMapEnsemblV5,507 transMapEstV5,279 transMapEstV5,476 transMapRefSeqV5,279 transMapRefSeqV5,476 transMapRnaV5,279 transMapRnaV5,476 transMapV5,385 transMapV5,582 during chainNeoSch1,829 chainNetNeoSch1,832 chainNetRn6,817 chainRn6,814 netNeoSch1,829 netRn6,814 dynamic chainNeoSch1,662 chainNetNeoSch1,665 chainNetRn6,650 chainRn6,647 netNeoSch1,662 netRn6,647 e ensGene,173 uniprot,2021 e.g chainNeoSch1,381 chainNetNeoSch1,384 chainNetRn6,373 chainRn6,370 netNeoSch1,381 netRn6,370 uniprot,398 uniprot,467 e247 transMapEnsemblV5,815 transMapEstV5,784 transMapRefSeqV5,784 transMapRnaV5,784 transMapV5,890 each chainNeoSch1,265 chainNetNeoSch1,268 chainNetRn6,260 chainRn6,257 cpgIslandExt,239 cpgIslandExt,253 cpgIslandExtUnmasked,242 cpgIslandExtUnmasked,256 cpgIslandSuper,239 cpgIslandSuper,253 est,214 genscan,99 intronEst,295 mrna,160 nestedRepeats,120 netNeoSch1,265 netRn6,257 transMapEnsemblV5,386 transMapEnsemblV5,400 transMapEnsemblV5,409 transMapEnsemblV5,428 transMapEstV5,355 transMapEstV5,369 transMapEstV5,378 transMapEstV5,397 transMapRefSeqV5,355 transMapRefSeqV5,369 transMapRefSeqV5,378 transMapRefSeqV5,397 transMapRnaV5,355 transMapRnaV5,369 transMapRnaV5,378 transMapRnaV5,397 transMapV5,461 transMapV5,475 transMapV5,484 transMapV5,503 uniprot,151 echo uniprot,1925 edge uniprot,1182 uniprot,1451 editors genscan,195 effect est,597 intronEst,678 either chainNeoSch1,133 chainNetNeoSch1,136 chainNetRn6,130 chainRn6,127 gap,86 netNeoSch1,133 netRn6,127 rmsk,273 uniprot,816 uniprot,1398 electronic nestedRepeats,348 rmsk,371 element rmsk,228 elements nestedRepeats,352 nestedRepeats,380 rmsk,3 rmsk,156 rmsk,164 rmsk,169 rmsk,176 rmsk,375 rmsk,403 eliminate est,669 intronEst,750 eliminating intronEst,109 elsevier genscan,202 em windowmaskerSdust,93 emerged chainNeoSch1,835 chainNetNeoSch1,838 chainNetRn6,823 chainRn6,820 est,567 intronEst,648 netNeoSch1,835 netRn6,820 end est,517 est,535 est,545 est,586 intronEst,598 intronEst,616 intronEst,626 intronEst,667 rmsk,245 transMapEnsemblV5,670 transMapEstV5,639 transMapRefSeqV5,639 transMapRnaV5,639 transMapV5,745 uniprot,126 uniprot,210 uniprot,1823 ends intronEst,90 ensembl ensGene,1 ensGene,3 ensGene,16 ensGene,38 ensGene,57 ensGene,151 ensGene,162 ensGene,191 transMapEnsemblV5,2 transMapEnsemblV5,4 transMapEnsemblV5,20 transMapEnsemblV5,40 transMapEnsemblV5,47 transMapEnsemblV5,58 transMapEnsemblV5,589 transMapEnsemblV5,705 transMapEstV5,558 transMapEstV5,674 transMapRefSeqV5,558 transMapRefSeqV5,674 transMapRnaV5,558 transMapRnaV5,674 transMapV5,664 transMapV5,780 uniprot,731 uniprot,834 uniprot,865 ensgene.txt.gz ensGene,88 ensure transMapEnsemblV5,382 transMapEstV5,351 transMapRefSeqV5,351 transMapRnaV5,351 transMapV5,457 enter chainNeoSch1,375 chainNetNeoSch1,378 chainNetRn6,367 chainRn6,364 netNeoSch1,375 netRn6,364 entered est,251 est,261 intronEst,332 intronEst,342 mrna,197 mrna,207 entire cpgIslandExt,301 cpgIslandExtUnmasked,304 cpgIslandSuper,301 windowmaskerSdust,37 entirely uniprot,1434 ermolaeva refGene,362 xenoRefGene,327 especially est,152 intronEst,233 mrna,98 est est,9 est,84 est,180 est,448 est,611 est,632 est,683 est,729 intronEst,11 intronEst,60 intronEst,75 intronEst,100 intronEst,125 intronEst,165 intronEst,261 intronEst,529 intronEst,692 intronEst,713 intronEst,764 intronEst,813 mrna,9 transMapEnsemblV5,686 transMapEstV5,4 transMapEstV5,18 transMapEstV5,655 transMapRefSeqV5,655 transMapRnaV5,655 transMapV5,761 ests est,2 est,4 est,20 est,26 est,190 est,295 est,310 est,351 est,369 est,487 est,532 est,543 est,644 est,671 intronEst,2 intronEst,4 intronEst,22 intronEst,38 intronEst,113 intronEst,119 intronEst,153 intronEst,271 intronEst,376 intronEst,391 intronEst,432 intronEst,450 intronEst,568 intronEst,613 intronEst,624 intronEst,725 intronEst,752 transMapEnsemblV5,176 transMapEnsemblV5,598 transMapEstV5,2 transMapEstV5,145 transMapEstV5,567 transMapRefSeqV5,145 transMapRefSeqV5,567 transMapRnaV5,145 transMapRnaV5,567 transMapV5,251 transMapV5,673 et cpgIslandExt,377 cpgIslandExtUnmasked,380 cpgIslandSuper,377 ensGene,45 ensGene,188 refGene,372 transMapEnsemblV5,732 transMapEstV5,701 transMapRefSeqV5,701 transMapRnaV5,701 transMapV5,807 xenoRefGene,337 etc uniprot,479 evaluate uniprot,1461 evaluated cpgIslandExt,257 cpgIslandExtUnmasked,260 cpgIslandSuper,257 even est,606 est,613 intronEst,687 intronEst,694 uniprot,136 every chainNeoSch1,282 chainNetNeoSch1,285 chainNetRn6,275 chainRn6,272 netNeoSch1,282 netRn6,272 uniprot,1571 evidence intronEst,63 evolution chainNeoSch1,1068 chainNetNeoSch1,1071 chainNetRn6,1056 chainRn6,1053 netNeoSch1,1068 netRn6,1053 evolutionary cpgIslandExt,98 cpgIslandExtUnmasked,101 cpgIslandSuper,98 transMapEnsemblV5,69 transMapEstV5,38 transMapRefSeqV5,38 transMapRnaV5,38 transMapV5,37 ew est,756 intronEst,840 mrna,473 ewing transMapEnsemblV5,726 transMapEstV5,695 transMapRefSeqV5,695 transMapRnaV5,695 transMapV5,801 exact uniprot,1622 uniprot,1747 example est,183 est,236 intronEst,264 intronEst,317 mrna,129 mrna,182 rmsk,256 transMapEnsemblV5,445 transMapEnsemblV5,657 transMapEstV5,414 transMapEstV5,626 transMapRefSeqV5,414 transMapRefSeqV5,626 transMapRnaV5,414 transMapRnaV5,626 transMapV5,96 transMapV5,520 transMapV5,732 uniprot,1450 uniprot,1811 uniprot,1901 except uniprot,508 exclude est,131 est,336 est,342 intronEst,212 intronEst,417 intronEst,423 mrna,77 mrna,282 mrna,288 exe cpgIslandExt,578 cpgIslandExtUnmasked,581 cpgIslandSuper,578 uniprot,1918 exist chainNeoSch1,414 chainNetNeoSch1,417 chainNetRn6,406 chainRn6,403 cpgIslandExt,179 cpgIslandExtUnmasked,182 cpgIslandSuper,179 gold,96 netNeoSch1,414 netRn6,403 exon augustusGene,86 exons chainNeoSch1,52 chainNetNeoSch1,55 chainNetRn6,52 chainRn6,49 genscan,44 netNeoSch1,52 netRn6,49 transMapEnsemblV5,739 transMapEstV5,708 transMapRefSeqV5,708 transMapRnaV5,708 transMapV5,814 exp cpgIslandExt,381 cpgIslandExtUnmasked,384 cpgIslandSuper,381 expansions simpleRepeat,48 expected cpgIslandExt,285 cpgIslandExt,366 cpgIslandExtUnmasked,288 cpgIslandExtUnmasked,369 cpgIslandSuper,285 cpgIslandSuper,366 expense intronEst,107 transMapEnsemblV5,295 transMapEstV5,264 transMapRefSeqV5,264 transMapRnaV5,264 transMapV5,370 experimentally uniprot,304 explanation gc5BaseBw,66 explored cpgIslandExt,514 cpgIslandExtUnmasked,517 cpgIslandSuper,514 ensGene,62 uniprot,1716 expressed est,17 est,191 intronEst,19 intronEst,272 mrna,137 expression cpgIslandExt,11 cpgIslandExt,146 cpgIslandExtUnmasked,14 cpgIslandExtUnmasked,149 cpgIslandSuper,11 cpgIslandSuper,146 extend rmsk,308 extra transMapEnsemblV5,549 transMapEstV5,518 transMapRefSeqV5,518 transMapRnaV5,518 transMapV5,624 extracellular unipLocExtra,1 unipLocExtra,3 uniprot,254 uniprot,262 uniprot,513 uniprot,566 extracted nestedRepeats,23 f chainNeoSch1,1041 chainNetNeoSch1,1044 chainNetRn6,1029 chainRn6,1026 gold,154 netNeoSch1,1041 netRn6,1026 refGene,359 xenoRefGene,324 facilitate genscan,106 uniprot,1852 factor est,228 intronEst,309 mrna,174 famiglietti uniprot,2018 families uniprot,1395 family rmsk,249 faq augustusGene,45 ensGene,28 genscan,60 nestedRepeats,298 refGene,74 rmsk,321 transMapEnsemblV5,576 transMapEstV5,545 transMapRefSeqV5,545 transMapRnaV5,545 transMapV5,651 uniprot,1839 far uniprot,599 farrell refGene,364 xenoRefGene,329 feature chainNeoSch1,251 chainNetNeoSch1,254 chainNetRn6,246 chainRn6,243 est,386 genscan,129 intronEst,467 mrna,332 netNeoSch1,251 netRn6,243 refGene,179 refGene,212 transMapEnsemblV5,116 transMapEstV5,85 transMapRefSeqV5,85 transMapRnaV5,85 transMapV5,191 uniprot,64 uniprot,524 uniprot,613 xenoRefGene,145 xenoRefGene,178 features refGene,115 transMapEnsemblV5,651 transMapEstV5,620 transMapRefSeqV5,620 transMapRnaV5,620 transMapV5,726 uniprot,694 uniprot,1805 xenoRefGene,81 feb gap,15 gold,17 fed chainNeoSch1,626 chainNetNeoSch1,629 chainNetRn6,616 chainRn6,613 netNeoSch1,626 netRn6,613 feedback refGene,41 uniprot,1445 uniprot,1961 fewer transMapV5,159 ffer windowmaskerSdust,96 field augustusGene,120 file cpgIslandExt,583 cpgIslandExtUnmasked,586 cpgIslandSuper,583 gap,50 gap,66 gold,49 gold,65 uniprot,884 uniprot,1511 uniprot,1614 uniprot,1737 uniprot,1756 windowmaskerSdust,77 filenames uniprot,1748 uniprot,1894 files ensGene,78 transMapEnsemblV5,544 transMapEnsemblV5,578 transMapEstV5,513 transMapEstV5,547 transMapRefSeqV5,513 transMapRefSeqV5,547 transMapRnaV5,513 transMapRnaV5,547 transMapV5,619 transMapV5,653 uniprot,1863 fill chainNeoSch1,859 chainNeoSch1,892 chainNetNeoSch1,862 chainNetNeoSch1,895 chainNetRn6,847 chainNetRn6,880 chainRn6,844 chainRn6,877 netNeoSch1,859 netNeoSch1,892 netRn6,844 netRn6,877 filled chainNeoSch1,423 chainNeoSch1,442 chainNeoSch1,841 chainNeoSch1,914 chainNetNeoSch1,426 chainNetNeoSch1,445 chainNetNeoSch1,844 chainNetNeoSch1,917 chainNetRn6,415 chainNetRn6,434 chainNetRn6,829 chainNetRn6,902 chainRn6,412 chainRn6,431 chainRn6,826 chainRn6,899 netNeoSch1,423 netNeoSch1,442 netNeoSch1,841 netNeoSch1,914 netRn6,412 netRn6,431 netRn6,826 netRn6,899 filter chainNeoSch1,387 chainNetNeoSch1,390 chainNetRn6,379 chainRn6,376 est,116 est,165 est,178 est,187 est,234 est,275 est,299 est,317 est,355 est,373 genscan,82 intronEst,197 intronEst,246 intronEst,259 intronEst,268 intronEst,315 intronEst,356 intronEst,380 intronEst,398 intronEst,436 intronEst,454 mrna,62 mrna,111 mrna,124 mrna,133 mrna,180 mrna,221 mrna,245 mrna,263 mrna,301 mrna,319 netNeoSch1,387 netRn6,376 uniprot,187 uniprot,664 filtered est,338 intronEst,419 mrna,284 transMapEnsemblV5,77 transMapEnsemblV5,349 transMapEstV5,46 transMapEstV5,318 transMapRefSeqV5,46 transMapRefSeqV5,318 transMapRnaV5,46 transMapRnaV5,318 transMapV5,45 transMapV5,424 uniprot,1480 uniprot,1499 filtering est,277 intronEst,358 mrna,223 transMapEnsemblV5,236 transMapEnsemblV5,304 transMapEstV5,205 transMapEstV5,273 transMapRefSeqV5,205 transMapRefSeqV5,273 transMapRnaV5,205 transMapRnaV5,273 transMapV5,311 transMapV5,379 uniprot,693 uniprot,912 uniprot,1154 final cpgIslandExt,89 cpgIslandExtUnmasked,92 cpgIslandSuper,89 uniprot,1153 find chainNeoSch1,671 chainNetNeoSch1,674 chainNetRn6,659 chainRn6,656 netNeoSch1,671 netRn6,656 rmsk,117 finder microsat,94 microsat,107 microsat,118 simpleRepeat,25 simpleRepeat,78 finding augustusGene,306 chainNeoSch1,292 chainNetNeoSch1,295 chainNetRn6,285 chainRn6,282 netNeoSch1,292 netRn6,282 transMapEnsemblV5,774 transMapEstV5,743 transMapRefSeqV5,743 transMapRnaV5,743 transMapV5,849 finds transMapV5,158 finger uniprot,327 finished gold,156 transMapEnsemblV5,360 transMapEstV5,329 transMapRefSeqV5,329 transMapRnaV5,329 transMapV5,435 first chainNeoSch1,799 chainNetNeoSch1,802 chainNetRn6,787 chainRn6,784 netNeoSch1,799 netRn6,784 uniprot,70 fish augustusGene,201 fit chainNeoSch1,819 chainNetNeoSch1,822 chainNetRn6,807 chainRn6,804 nestedRepeats,175 netNeoSch1,819 netRn6,804 fix uniprot,851 flag nestedRepeats,287 rmsk,294 flags nestedRepeats,289 rmsk,296 fly augustusGene,214 followed cpgIslandExt,47 cpgIslandExtUnmasked,50 cpgIslandSuper,47 following chainNeoSch1,680 chainNetNeoSch1,683 chainNetRn6,668 chainRn6,665 cpgIslandExt,260 cpgIslandExt,408 cpgIslandExtUnmasked,263 cpgIslandExtUnmasked,411 cpgIslandSuper,260 cpgIslandSuper,408 gap,119 genscan,81 netNeoSch1,680 netRn6,665 transMapEnsemblV5,586 transMapEstV5,555 transMapRefSeqV5,555 transMapRnaV5,555 transMapV5,661 windowmaskerSdust,56 follows est,49 genscan,67 intronEst,133 mrna,30 refGene,81 transMapEnsemblV5,97 transMapEnsemblV5,214 transMapEstV5,66 transMapEstV5,183 transMapRefSeqV5,66 transMapRefSeqV5,183 transMapRnaV5,66 transMapRnaV5,183 transMapV5,172 transMapV5,289 xenoRefGene,47 for augustusGene,34 augustusGene,52 augustusGene,68 augustusGene,80 augustusGene,175 augustusGene,184 augustusGene,192 augustusGene,232 augustusGene,253 augustusGene,260 augustusGene,274 chainNeoSch1,264 chainNeoSch1,281 chainNeoSch1,291 chainNeoSch1,298 chainNeoSch1,500 chainNetNeoSch1,267 chainNetNeoSch1,284 chainNetNeoSch1,294 chainNetNeoSch1,301 chainNetNeoSch1,503 chainNetRn6,259 chainNetRn6,274 chainNetRn6,284 chainNetRn6,291 chainNetRn6,492 chainRn6,256 chainRn6,271 chainRn6,281 chainRn6,288 chainRn6,489 cpgIslandExt,133 cpgIslandExt,162 cpgIslandExt,242 cpgIslandExt,246 cpgIslandExt,258 cpgIslandExt,309 cpgIslandExt,500 cpgIslandExt,556 cpgIslandExtUnmasked,136 cpgIslandExtUnmasked,165 cpgIslandExtUnmasked,245 cpgIslandExtUnmasked,249 cpgIslandExtUnmasked,261 cpgIslandExtUnmasked,312 cpgIslandExtUnmasked,503 cpgIslandExtUnmasked,559 cpgIslandSuper,133 cpgIslandSuper,162 cpgIslandSuper,242 cpgIslandSuper,246 cpgIslandSuper,258 cpgIslandSuper,309 cpgIslandSuper,500 cpgIslandSuper,556 cytoBandIdeo,5 ensGene,17 ensGene,30 ensGene,72 ensGene,79 ensGene,98 ensGene,152 ensGene,157 est,53 est,111 est,182 est,213 est,235 est,408 est,419 est,432 est,480 gc5BaseBw,64 genscan,49 genscan,71 genscan,124 genscan,131 genscan,174 intronEst,114 intronEst,137 intronEst,192 intronEst,263 intronEst,294 intronEst,316 intronEst,489 intronEst,500 intronEst,513 intronEst,561 microsat,95 mrna,34 mrna,57 mrna,128 mrna,159 mrna,181 mrna,345 mrna,358 mrna,371 nestedRepeats,35 nestedRepeats,239 nestedRepeats,293 nestedRepeats,299 nestedRepeats,311 nestedRepeats,362 netNeoSch1,264 netNeoSch1,281 netNeoSch1,291 netNeoSch1,298 netNeoSch1,500 netRn6,256 netRn6,271 netRn6,281 netRn6,288 netRn6,489 refGene,42 refGene,58 refGene,63 refGene,85 refGene,207 rmsk,25 rmsk,120 rmsk,255 rmsk,300 rmsk,322 rmsk,334 rmsk,385 simpleRepeat,30 simpleRepeat,56 transMapEnsemblV5,41 transMapEnsemblV5,45 transMapEnsemblV5,67 transMapEnsemblV5,101 transMapEnsemblV5,129 transMapEnsemblV5,146 transMapEnsemblV5,189 transMapEnsemblV5,215 transMapEnsemblV5,233 transMapEnsemblV5,264 transMapEnsemblV5,266 transMapEnsemblV5,284 transMapEnsemblV5,288 transMapEnsemblV5,385 transMapEnsemblV5,399 transMapEnsemblV5,408 transMapEnsemblV5,444 transMapEnsemblV5,520 transMapEnsemblV5,535 transMapEnsemblV5,564 transMapEnsemblV5,628 transMapEnsemblV5,632 transMapEnsemblV5,656 transMapEnsemblV5,799 transMapEstV5,36 transMapEstV5,70 transMapEstV5,98 transMapEstV5,115 transMapEstV5,158 transMapEstV5,184 transMapEstV5,202 transMapEstV5,233 transMapEstV5,235 transMapEstV5,253 transMapEstV5,257 transMapEstV5,354 transMapEstV5,368 transMapEstV5,377 transMapEstV5,413 transMapEstV5,489 transMapEstV5,504 transMapEstV5,533 transMapEstV5,597 transMapEstV5,601 transMapEstV5,625 transMapEstV5,768 transMapRefSeqV5,36 transMapRefSeqV5,70 transMapRefSeqV5,98 transMapRefSeqV5,115 transMapRefSeqV5,158 transMapRefSeqV5,184 transMapRefSeqV5,202 transMapRefSeqV5,233 transMapRefSeqV5,235 transMapRefSeqV5,253 transMapRefSeqV5,257 transMapRefSeqV5,354 transMapRefSeqV5,368 transMapRefSeqV5,377 transMapRefSeqV5,413 transMapRefSeqV5,489 transMapRefSeqV5,504 transMapRefSeqV5,533 transMapRefSeqV5,597 transMapRefSeqV5,601 transMapRefSeqV5,625 transMapRefSeqV5,768 transMapRnaV5,36 transMapRnaV5,70 transMapRnaV5,98 transMapRnaV5,115 transMapRnaV5,158 transMapRnaV5,184 transMapRnaV5,202 transMapRnaV5,233 transMapRnaV5,235 transMapRnaV5,253 transMapRnaV5,257 transMapRnaV5,354 transMapRnaV5,368 transMapRnaV5,377 transMapRnaV5,413 transMapRnaV5,489 transMapRnaV5,504 transMapRnaV5,533 transMapRnaV5,597 transMapRnaV5,601 transMapRnaV5,625 transMapRnaV5,768 transMapV5,35 transMapV5,61 transMapV5,95 transMapV5,97 transMapV5,150 transMapV5,176 transMapV5,204 transMapV5,221 transMapV5,264 transMapV5,290 transMapV5,308 transMapV5,339 transMapV5,341 transMapV5,359 transMapV5,363 transMapV5,460 transMapV5,474 transMapV5,483 transMapV5,519 transMapV5,595 transMapV5,610 transMapV5,639 transMapV5,703 transMapV5,707 transMapV5,731 transMapV5,874 ucscToINSDC,45 uniprot,75 uniprot,78 uniprot,401 uniprot,405 uniprot,462 uniprot,497 uniprot,532 uniprot,549 uniprot,697 uniprot,739 uniprot,743 uniprot,770 uniprot,842 uniprot,846 uniprot,861 uniprot,886 uniprot,964 uniprot,997 uniprot,1017 uniprot,1023 uniprot,1057 uniprot,1070 uniprot,1097 uniprot,1119 uniprot,1211 uniprot,1238 uniprot,1320 uniprot,1393 uniprot,1427 uniprot,1627 uniprot,1644 uniprot,1651 uniprot,1661 uniprot,1726 uniprot,1782 uniprot,1786 uniprot,1810 uniprot,1833 uniprot,1840 uniprot,1869 uniprot,1977 uniprot,1982 uniprot,2034 windowmaskerSdust,35 windowmaskerSdust,86 windowmaskerSdust,103 xenoRefGene,19 xenoRefGene,51 xenoRefGene,173 form uniprot,1665 format chainNeoSch1,617 chainNetNeoSch1,620 chainNetRn6,607 chainRn6,604 ensGene,77 ensGene,97 gap,62 gold,61 netNeoSch1,617 netRn6,604 transMapEnsemblV5,417 transMapEstV5,386 transMapRefSeqV5,386 transMapRnaV5,386 transMapV5,492 formats uniprot,885 uniprot,1865 formula cpgIslandExt,373 cpgIslandExtUnmasked,376 cpgIslandSuper,373 forth chainNeoSch1,449 chainNetNeoSch1,452 chainNetRn6,441 chainRn6,438 netNeoSch1,449 netRn6,438 found augustusGene,100 ensGene,139 gold,137 mrna,412 transMapEnsemblV5,640 transMapEstV5,609 transMapRefSeqV5,609 transMapRnaV5,609 transMapV5,715 uniprot,241 uniprot,1128 uniprot,1271 uniprot,1328 uniprot,1557 uniprot,1751 uniprot,1794 four chainNeoSch1,517 chainNetNeoSch1,520 chainNetRn6,509 chainRn6,506 netNeoSch1,517 netRn6,506 fragments est,39 gold,4 intronEst,51 nestedRepeats,3 nestedRepeats,19 nestedRepeats,82 nestedRepeats,101 nestedRepeats,127 nestedRepeats,139 nestedRepeats,191 nestedRepeats,205 nestedRepeats,208 free uniprot,1435 from augustusGene,19 chainNeoSch1,183 chainNeoSch1,312 chainNeoSch1,569 chainNeoSch1,593 chainNeoSch1,776 chainNeoSch1,949 chainNeoSch1,981 chainNetNeoSch1,186 chainNetNeoSch1,315 chainNetNeoSch1,572 chainNetNeoSch1,596 chainNetNeoSch1,779 chainNetNeoSch1,952 chainNetNeoSch1,984 chainNetRn6,178 chainNetRn6,303 chainNetRn6,561 chainNetRn6,583 chainNetRn6,764 chainNetRn6,937 chainNetRn6,969 chainRn6,175 chainRn6,300 chainRn6,558 chainRn6,580 chainRn6,761 chainRn6,934 chainRn6,966 cpgIslandExt,81 cpgIslandExt,496 cpgIslandExt,535 cpgIslandExt,563 cpgIslandExt,574 cpgIslandExtUnmasked,84 cpgIslandExtUnmasked,499 cpgIslandExtUnmasked,538 cpgIslandExtUnmasked,566 cpgIslandExtUnmasked,577 cpgIslandSuper,81 cpgIslandSuper,496 cpgIslandSuper,535 cpgIslandSuper,563 cpgIslandSuper,574 ensGene,106 ensGene,112 est,404 est,452 est,473 est,583 est,601 est,645 est,728 gap,47 genscan,15 gold,3 gold,46 intronEst,485 intronEst,533 intronEst,554 intronEst,664 intronEst,682 intronEst,726 intronEst,812 mrna,5 mrna,445 nestedRepeats,24 nestedRepeats,50 nestedRepeats,72 netNeoSch1,183 netNeoSch1,312 netNeoSch1,569 netNeoSch1,593 netNeoSch1,776 netNeoSch1,949 netNeoSch1,981 netRn6,175 netRn6,300 netRn6,558 netRn6,580 netRn6,761 netRn6,934 netRn6,966 refGene,22 refGene,199 refGene,318 rmsk,86 transMapEnsemblV5,29 transMapEnsemblV5,157 transMapEnsemblV5,555 transMapEnsemblV5,618 transMapEnsemblV5,683 transMapEstV5,27 transMapEstV5,126 transMapEstV5,524 transMapEstV5,587 transMapEstV5,652 transMapRefSeqV5,27 transMapRefSeqV5,126 transMapRefSeqV5,524 transMapRefSeqV5,587 transMapRefSeqV5,652 transMapRnaV5,27 transMapRnaV5,126 transMapRnaV5,524 transMapRnaV5,587 transMapRnaV5,652 transMapV5,26 transMapV5,111 transMapV5,232 transMapV5,630 transMapV5,693 transMapV5,758 ucscToINSDC,25 ucscToINSDC,37 uniprot,21 uniprot,36 uniprot,115 uniprot,198 uniprot,250 uniprot,557 uniprot,747 uniprot,831 uniprot,890 uniprot,915 uniprot,1507 uniprot,1696 uniprot,1742 uniprot,1772 uniprot,1844 uniprot,1953 uniprot,1962 windowmaskerSdust,41 xenoRefGene,25 xenoRefGene,165 xenoRefGene,284 frommer cpgIslandExt,606 cpgIslandExtUnmasked,609 cpgIslandSuper,606 ftp windowmaskerSdust,44 full chainNeoSch1,245 chainNeoSch1,393 chainNetNeoSch1,248 chainNetNeoSch1,396 chainNetRn6,240 chainNetRn6,385 chainRn6,237 chainRn6,382 nestedRepeats,118 netNeoSch1,245 netNeoSch1,393 netRn6,237 netRn6,382 rmsk,140 transMapEnsemblV5,52 transMapEnsemblV5,278 transMapEstV5,247 transMapRefSeqV5,247 transMapRnaV5,247 transMapV5,353 uniprot,486 uniprot,528 uniprot,540 furthermore augustusGene,64 future rmsk,272 g cpgIslandExt,51 cpgIslandExt,392 cpgIslandExt,597 cpgIslandExtUnmasked,54 cpgIslandExtUnmasked,395 cpgIslandExtUnmasked,600 cpgIslandSuper,51 cpgIslandSuper,392 cpgIslandSuper,597 ensGene,175 gc5BaseBw,20 microsat,115 simpleRepeat,75 g-25-100100-90 chainNetRn6,676 chainRn6,673 netRn6,673 g-31-125100-114 chainNeoSch1,688 chainNetNeoSch1,691 netNeoSch1,688 gambiae augustusGene,219 gap chainNeoSch1,82 chainNeoSch1,92 chainNeoSch1,195 chainNeoSch1,486 chainNeoSch1,498 chainNeoSch1,521 chainNeoSch1,539 chainNeoSch1,554 chainNeoSch1,571 chainNeoSch1,712 chainNeoSch1,843 chainNetNeoSch1,85 chainNetNeoSch1,95 chainNetNeoSch1,198 chainNetNeoSch1,489 chainNetNeoSch1,501 chainNetNeoSch1,524 chainNetNeoSch1,542 chainNetNeoSch1,557 chainNetNeoSch1,574 chainNetNeoSch1,715 chainNetNeoSch1,846 chainNetRn6,81 chainNetRn6,91 chainNetRn6,190 chainNetRn6,478 chainNetRn6,490 chainNetRn6,513 chainNetRn6,531 chainNetRn6,546 chainNetRn6,563 chainNetRn6,700 chainNetRn6,831 chainRn6,78 chainRn6,88 chainRn6,187 chainRn6,475 chainRn6,487 chainRn6,510 chainRn6,528 chainRn6,543 chainRn6,560 chainRn6,697 chainRn6,828 est,427 gap,1 gap,2 gap,90 gap,101 gap,114 intronEst,508 mrna,366 netNeoSch1,82 netNeoSch1,92 netNeoSch1,195 netNeoSch1,486 netNeoSch1,498 netNeoSch1,521 netNeoSch1,539 netNeoSch1,554 netNeoSch1,571 netNeoSch1,712 netNeoSch1,843 netRn6,78 netRn6,88 netRn6,187 netRn6,475 netRn6,487 netRn6,510 netRn6,528 netRn6,543 netRn6,560 netRn6,697 netRn6,828 transMapEnsemblV5,141 transMapEstV5,110 transMapRefSeqV5,110 transMapRnaV5,110 transMapV5,216 gapless chainNeoSch1,655 chainNetNeoSch1,658 chainNetRn6,643 chainRn6,640 netNeoSch1,655 netRn6,640 gaps chainNeoSch1,88 chainNeoSch1,99 chainNeoSch1,112 chainNeoSch1,146 chainNeoSch1,172 chainNeoSch1,217 chainNeoSch1,228 chainNeoSch1,413 chainNeoSch1,435 chainNeoSch1,462 chainNeoSch1,898 chainNeoSch1,904 chainNetNeoSch1,91 chainNetNeoSch1,102 chainNetNeoSch1,115 chainNetNeoSch1,149 chainNetNeoSch1,175 chainNetNeoSch1,220 chainNetNeoSch1,231 chainNetNeoSch1,416 chainNetNeoSch1,438 chainNetNeoSch1,465 chainNetNeoSch1,901 chainNetNeoSch1,907 chainNetRn6,87 chainNetRn6,98 chainNetRn6,109 chainNetRn6,143 chainNetRn6,167 chainNetRn6,212 chainNetRn6,223 chainNetRn6,405 chainNetRn6,427 chainNetRn6,454 chainNetRn6,886 chainNetRn6,892 chainRn6,84 chainRn6,95 chainRn6,106 chainRn6,140 chainRn6,164 chainRn6,209 chainRn6,220 chainRn6,402 chainRn6,424 chainRn6,451 chainRn6,883 chainRn6,889 gap,12 gap,42 gap,67 gap,123 gap,125 gold,95 netNeoSch1,88 netNeoSch1,99 netNeoSch1,112 netNeoSch1,146 netNeoSch1,172 netNeoSch1,217 netNeoSch1,228 netNeoSch1,413 netNeoSch1,435 netNeoSch1,462 netNeoSch1,898 netNeoSch1,904 netRn6,84 netRn6,95 netRn6,106 netRn6,140 netRn6,164 netRn6,209 netRn6,220 netRn6,402 netRn6,424 netRn6,451 netRn6,883 netRn6,889 gardiner-garden cpgIslandExt,376 cpgIslandExt,604 cpgIslandExtUnmasked,379 cpgIslandExtUnmasked,607 cpgIslandSuper,376 cpgIslandSuper,604 gary microsat,111 simpleRepeat,71 gasteiger uniprot,2020 gattiker uniprot,2016 gbdb transMapEnsemblV5,661 transMapEstV5,630 transMapRefSeqV5,630 transMapRnaV5,630 transMapV5,736 uniprot,1815 gc cpgIslandExt,262 cpgIslandExtUnmasked,265 cpgIslandSuper,262 gc5BaseBw,1 gc5BaseBw,3 gc5BaseBw,13 gc5BaseBw,30 genbank est,22 est,646 est,757 est,781 intronEst,24 intronEst,727 intronEst,841 intronEst,865 mrna,6 mrna,20 mrna,384 mrna,474 mrna,498 transMapEnsemblV5,171 transMapEnsemblV5,174 transMapEstV5,16 transMapEstV5,140 transMapEstV5,143 transMapRefSeqV5,140 transMapRefSeqV5,143 transMapRnaV5,4 transMapRnaV5,17 transMapRnaV5,140 transMapRnaV5,143 transMapV5,246 transMapV5,249 uniprot,376 gencode transMapEnsemblV5,6 transMapEnsemblV5,18 transMapEnsemblV5,38 transMapEnsemblV5,707 transMapEstV5,676 transMapRefSeqV5,676 transMapRnaV5,676 transMapV5,782 uniprot,730 gene augustusGene,5 augustusGene,10 augustusGene,40 augustusGene,112 augustusGene,157 augustusGene,163 augustusGene,305 augustusGene,320 cpgIslandExt,145 cpgIslandExtUnmasked,148 cpgIslandSuper,145 ensGene,7 ensGene,11 ensGene,23 ensGene,39 ensGene,58 ensGene,155 genscan,4 genscan,8 genscan,55 genscan,72 genscan,111 genscan,117 genscan,214 refGene,7 refGene,43 refGene,69 refGene,86 refGene,140 refGene,155 refGene,160 refGene,188 refGene,217 transMapEnsemblV5,12 transMapEnsemblV5,53 transMapEnsemblV5,59 transMapEnsemblV5,390 transMapEnsemblV5,773 transMapEstV5,10 transMapEstV5,359 transMapEstV5,742 transMapRefSeqV5,5 transMapRefSeqV5,11 transMapRefSeqV5,18 transMapRefSeqV5,359 transMapRefSeqV5,742 transMapRnaV5,11 transMapRnaV5,359 transMapRnaV5,742 transMapV5,9 transMapV5,17 transMapV5,465 transMapV5,848 unipAliSwissprot,20 unipAliTrembl,12 unipChain,10 unipConflict,8 unipDisulfBond,8 unipDomain,6 unipInterest,8 unipLocCytopl,7 unipLocExtra,7 unipLocSignal,8 unipLocTransMemb,7 unipModif,9 unipMut,8 unipOther,8 unipRepeat,6 unipStruct,10 uniprot,9 uniprot,732 uniprot,1025 uniprot,1050 uniprot,1059 uniprot,1080 uniprot,1281 uniprot,1394 xenoRefGene,8 xenoRefGene,52 xenoRefGene,106 xenoRefGene,121 xenoRefGene,126 xenoRefGene,154 xenoRefGene,183 gene-rich gc5BaseBw,36 genedx uniprot,1973 genepred ensGene,76 general est,529 intronEst,610 generally rmsk,72 uniprot,248 generate est,640 intronEst,721 nestedRepeats,261 nestedRepeats,320 rmsk,343 generated cpgIslandExt,588 cpgIslandExtUnmasked,591 cpgIslandSuper,588 ensGene,14 nestedRepeats,282 refGene,322 rmsk,289 xenoRefGene,288 generating augustusGene,189 genes augustusGene,8 augustusGene,44 cpgIslandExt,20 cpgIslandExt,23 cpgIslandExtUnmasked,23 cpgIslandExtUnmasked,26 cpgIslandSuper,20 cpgIslandSuper,23 ensGene,2 ensGene,4 ensGene,5 ensGene,27 ensGene,92 est,42 genscan,2 genscan,6 genscan,59 intronEst,54 refGene,2 refGene,4 refGene,5 refGene,12 refGene,20 refGene,73 refGene,226 refGene,234 refGene,245 simpleRepeat,41 transMapEnsemblV5,10 transMapEnsemblV5,88 transMapEnsemblV5,170 transMapEnsemblV5,184 transMapEnsemblV5,290 transMapEnsemblV5,803 transMapEstV5,8 transMapEstV5,57 transMapEstV5,139 transMapEstV5,153 transMapEstV5,259 transMapEstV5,772 transMapRefSeqV5,9 transMapRefSeqV5,57 transMapRefSeqV5,139 transMapRefSeqV5,153 transMapRefSeqV5,259 transMapRefSeqV5,772 transMapRnaV5,9 transMapRnaV5,57 transMapRnaV5,139 transMapRnaV5,153 transMapRnaV5,259 transMapRnaV5,772 transMapV5,7 transMapV5,58 transMapV5,72 transMapV5,245 transMapV5,259 transMapV5,365 transMapV5,878 unipAliSwissprot,18 unipAliTrembl,10 unipChain,8 unipConflict,6 unipDisulfBond,6 unipDomain,4 unipInterest,6 unipLocCytopl,5 unipLocExtra,5 unipLocSignal,6 unipLocTransMemb,5 unipModif,7 unipMut,6 unipOther,6 unipRepeat,4 unipStruct,8 uniprot,7 uniprot,1300 xenoRefGene,5 xenoRefGene,6 xenoRefGene,18 xenoRefGene,192 xenoRefGene,200 xenoRefGene,211 genet nestedRepeats,354 nestedRepeats,386 nestedRepeats,408 rmsk,377 rmsk,409 rmsk,431 genetic nestedRepeats,52 rmsk,88 genome augustusGene,31 chainNeoSch1,23 chainNeoSch1,79 chainNeoSch1,212 chainNeoSch1,287 chainNeoSch1,300 chainNeoSch1,797 chainNeoSch1,1118 chainNetNeoSch1,26 chainNetNeoSch1,82 chainNetNeoSch1,215 chainNetNeoSch1,290 chainNetNeoSch1,303 chainNetNeoSch1,800 chainNetNeoSch1,1121 chainNetRn6,23 chainNetRn6,78 chainNetRn6,207 chainNetRn6,280 chainNetRn6,293 chainNetRn6,785 chainNetRn6,1106 chainRn6,20 chainRn6,75 chainRn6,204 chainRn6,277 chainRn6,290 chainRn6,782 chainRn6,1103 cpgIslandExt,164 cpgIslandExt,302 cpgIslandExtUnmasked,167 cpgIslandExtUnmasked,305 cpgIslandSuper,164 cpgIslandSuper,302 ensGene,164 ensGene,192 est,25 est,651 est,804 gap,18 gap,20 gold,20 gold,22 gold,150 intronEst,27 intronEst,37 intronEst,732 intronEst,888 mrna,23 mrna,391 mrna,521 nestedRepeats,405 netNeoSch1,23 netNeoSch1,79 netNeoSch1,212 netNeoSch1,287 netNeoSch1,300 netNeoSch1,797 netNeoSch1,1118 netRn6,20 netRn6,75 netRn6,204 netRn6,277 netRn6,290 netRn6,782 netRn6,1103 refGene,257 refGene,341 rmsk,428 transMapEnsemblV5,36 transMapEnsemblV5,163 transMapEnsemblV5,180 transMapEnsemblV5,204 transMapEnsemblV5,333 transMapEnsemblV5,344 transMapEnsemblV5,405 transMapEnsemblV5,415 transMapEnsemblV5,449 transMapEnsemblV5,472 transMapEnsemblV5,605 transMapEnsemblV5,743 transMapEstV5,34 transMapEstV5,132 transMapEstV5,149 transMapEstV5,173 transMapEstV5,302 transMapEstV5,313 transMapEstV5,374 transMapEstV5,384 transMapEstV5,418 transMapEstV5,441 transMapEstV5,574 transMapEstV5,712 transMapRefSeqV5,34 transMapRefSeqV5,132 transMapRefSeqV5,149 transMapRefSeqV5,173 transMapRefSeqV5,302 transMapRefSeqV5,313 transMapRefSeqV5,374 transMapRefSeqV5,384 transMapRefSeqV5,418 transMapRefSeqV5,441 transMapRefSeqV5,574 transMapRefSeqV5,712 transMapRnaV5,34 transMapRnaV5,132 transMapRnaV5,149 transMapRnaV5,173 transMapRnaV5,302 transMapRnaV5,313 transMapRnaV5,374 transMapRnaV5,384 transMapRnaV5,418 transMapRnaV5,441 transMapRnaV5,574 transMapRnaV5,712 transMapV5,33 transMapV5,84 transMapV5,238 transMapV5,255 transMapV5,279 transMapV5,408 transMapV5,419 transMapV5,480 transMapV5,490 transMapV5,524 transMapV5,547 transMapV5,680 transMapV5,818 ucscToINSDC,18 unipAliSwissprot,9 unipAliTrembl,9 uniprot,88 uniprot,103 uniprot,120 uniprot,203 uniprot,216 uniprot,609 uniprot,642 uniprot,717 uniprot,749 uniprot,803 uniprot,811 uniprot,910 uniprot,1141 uniprot,1377 uniprot,1494 uniprot,1520 uniprot,1543 uniprot,1730 uniprot,1847 uniprot,1858 uniprot,1891 xenoRefGene,223 xenoRefGene,306 genome.bed uniprot,1935 uniprot,1937 genomes chainNeoSch1,29 chainNeoSch1,598 chainNeoSch1,1080 chainNetNeoSch1,32 chainNetNeoSch1,601 chainNetNeoSch1,1083 chainNetRn6,29 chainNetRn6,588 chainNetRn6,1068 chainRn6,26 chainRn6,585 chainRn6,1065 cpgIslandExt,612 cpgIslandExtUnmasked,615 cpgIslandSuper,612 nestedRepeats,369 nestedRepeats,383 netNeoSch1,29 netNeoSch1,598 netNeoSch1,1080 netRn6,26 netRn6,585 netRn6,1065 refGene,410 rmsk,392 rmsk,406 transMapEnsemblV5,361 transMapEnsemblV5,369 transMapEstV5,330 transMapEstV5,338 transMapRefSeqV5,330 transMapRefSeqV5,338 transMapRnaV5,330 transMapRnaV5,338 transMapV5,436 transMapV5,444 uniprot,863 uniprot,941 windowmaskerSdust,105 xenoRefGene,375 genomic chainNeoSch1,505 chainNeoSch1,1032 chainNeoSch1,1048 chainNetNeoSch1,508 chainNetNeoSch1,1035 chainNetNeoSch1,1051 chainNetRn6,497 chainNetRn6,1020 chainNetRn6,1036 chainRn6,494 chainRn6,1017 chainRn6,1033 est,88 est,406 est,607 est,717 genscan,92 genscan,218 intronEst,72 intronEst,169 intronEst,487 intronEst,688 intronEst,798 mrna,343 mrna,433 netNeoSch1,505 netNeoSch1,1032 netNeoSch1,1048 netRn6,494 netRn6,1017 netRn6,1033 refGene,196 refGene,307 transMapEnsemblV5,127 transMapEstV5,96 transMapRefSeqV5,96 transMapRnaV5,96 transMapV5,202 uniprot,28 uniprot,450 windowmaskerSdust,3 xenoRefGene,162 xenoRefGene,273 genomics chainNeoSch1,15 chainNetNeoSch1,18 chainNetNeoSch1Viewchain,14 chainNetNeoSch1Viewnet,14 chainNetRn6,15 chainNetRn6Viewchain,13 chainNetRn6Viewnet,13 chainRn6,12 netNeoSch1,15 netRn6,12 transMapEnsemblV5,742 transMapEnsemblV5,797 transMapEstV5,711 transMapEstV5,766 transMapRefSeqV5,711 transMapRefSeqV5,766 transMapRnaV5,711 transMapRnaV5,766 transMapV5,817 transMapV5,872 genscan genscan,1 genscan,3 genscan,17 genscan,136 genscan,177 genuine intronEst,111 gertz windowmaskerSdust,92 giri nestedRepeats,56 nestedRepeats,310 rmsk,92 rmsk,333 github uniprot,1559 give transMapEnsemblV5,437 transMapEstV5,406 transMapRefSeqV5,406 transMapRnaV5,406 transMapV5,512 given transMapEnsemblV5,481 transMapEnsemblV5,654 transMapEstV5,450 transMapEstV5,623 transMapRefSeqV5,450 transMapRefSeqV5,623 transMapRnaV5,450 transMapRnaV5,623 transMapV5,556 transMapV5,729 uniprot,741 uniprot,1235 uniprot,1240 uniprot,1808 global transMapEnsemblV5,354 transMapEstV5,323 transMapRefSeqV5,323 transMapRnaV5,323 transMapV5,429 glyco uniprot,469 glycosylation uniprot,341 uniprot,584 go est,414 est,435 genscan,113 intronEst,495 intronEst,516 mrna,351 mrna,374 refGene,213 uniprot,1412 xenoRefGene,179 gold gold,90 gold,104 goldenpath uniprot,1907 gr refGene,355 xenoRefGene,320 graph gc5BaseBw,59 gc5BaseBw,78 graphical chainNeoSch1,452 chainNetNeoSch1,455 chainNetRn6,444 chainRn6,441 gold,129 netNeoSch1,452 netRn6,441 rmsk,211 greater cpgIslandExt,267 cpgIslandExt,269 cpgIslandExt,274 cpgIslandExtUnmasked,270 cpgIslandExtUnmasked,272 cpgIslandExtUnmasked,277 cpgIslandSuper,267 cpgIslandSuper,269 cpgIslandSuper,274 green cpgIslandExt,10 cpgIslandExtUnmasked,13 cpgIslandSuper,10 nestedRepeats,328 rmsk,351 uniprot,588 uniprot,593 group augustusGene,198 augustusGene,235 chainNeoSch1,647 chainNetNeoSch1,650 chainNetRn6,635 chainRn6,632 netNeoSch1,647 netRn6,632 uniprot,430 groups augustusGene,194 gs cpgIslandExt,294 cpgIslandExtUnmasked,297 cpgIslandSuper,294 gt cpgIslandExt,422 cpgIslandExt,488 cpgIslandExtUnmasked,425 cpgIslandExtUnmasked,491 cpgIslandSuper,422 cpgIslandSuper,488 intronEst,88 uniprot,907 uniprot,909 uniprot,1930 gtf ensGene,96 guanine cpgIslandExt,52 cpgIslandExtUnmasked,55 cpgIslandSuper,52 gc5BaseBw,21 h uniprot,2013 had transMapEnsemblV5,194 transMapEstV5,163 transMapRefSeqV5,163 transMapRnaV5,163 transMapV5,269 haeussler uniprot,1945 handful uniprot,1180 haplotype uniprot,852 hard cpgIslandExt,416 cpgIslandExtUnmasked,419 cpgIslandSuper,416 hardison chainNeoSch1,951 chainNeoSch1,1108 chainNetNeoSch1,954 chainNetNeoSch1,1111 chainNetRn6,939 chainNetRn6,1096 chainRn6,936 chainRn6,1093 netNeoSch1,951 netNeoSch1,1108 netRn6,936 netRn6,1093 harris chainNeoSch1,1025 chainNetNeoSch1,1028 chainNetRn6,1013 chainRn6,1010 netNeoSch1,1025 netRn6,1010 hart refGene,366 xenoRefGene,331 has est,114 intronEst,195 mrna,60 nestedRepeats,246 refGene,100 transMapV5,145 uniprot,33 uniprot,46 uniprot,154 uniprot,606 uniprot,1195 uniprot,1232 uniprot,1381 xenoRefGene,66 haussler augustusGene,292 chainNeoSch1,986 chainNeoSch1,1066 chainNeoSch1,1110 chainNetNeoSch1,989 chainNetNeoSch1,1069 chainNetNeoSch1,1113 chainNetRn6,974 chainNetRn6,1054 chainNetRn6,1098 chainRn6,971 chainRn6,1051 chainRn6,1095 netNeoSch1,986 netNeoSch1,1066 netNeoSch1,1110 netRn6,971 netRn6,1051 netRn6,1095 transMapEnsemblV5,760 transMapEnsemblV5,794 transMapEstV5,729 transMapEstV5,763 transMapRefSeqV5,729 transMapRefSeqV5,763 transMapRnaV5,729 transMapRnaV5,763 transMapV5,835 transMapV5,869 have chainNeoSch1,581 chainNetNeoSch1,584 chainNetRn6,573 chainRn6,570 intronEst,6 intronEst,87 nestedRepeats,88 netNeoSch1,581 netRn6,570 rmsk,69 rmsk,108 uniprot,170 uniprot,302 uniprot,942 uniprot,1000 uniprot,1042 uniprot,1444 having cpgIslandExt,138 cpgIslandExtUnmasked,141 cpgIslandSuper,138 est,690 est,699 intronEst,771 intronEst,780 mrna,406 mrna,415 refGene,280 refGene,289 xenoRefGene,246 xenoRefGene,255 hawaiian chainNeoSch1,1 chainNeoSch1,5 chainNeoSch1,69 chainNeoSch1,102 chainNeoSch1,156 chainNeoSch1,276 chainNeoSch1,303 chainNeoSch1,586 chainNeoSch1,636 chainNetNeoSch1,1 chainNetNeoSch1,6 chainNetNeoSch1,72 chainNetNeoSch1,105 chainNetNeoSch1,159 chainNetNeoSch1,279 chainNetNeoSch1,306 chainNetNeoSch1,589 chainNetNeoSch1,639 chainNetNeoSch1Viewchain,2 chainNetNeoSch1Viewnet,2 netNeoSch1,1 netNeoSch1,5 netNeoSch1,69 netNeoSch1,102 netNeoSch1,156 netNeoSch1,276 netNeoSch1,303 netNeoSch1,586 netNeoSch1,636 heavily uniprot,1533 helices uniprot,366 help cpgIslandExt,546 cpgIslandExtUnmasked,549 cpgIslandSuper,546 ensGene,126 gc5BaseBw,61 refGene,59 helpful est,142 intronEst,223 mrna,88 helps cpgIslandExt,74 cpgIslandExtUnmasked,77 cpgIslandSuper,74 here rmsk,127 transMapEnsemblV5,136 transMapEnsemblV5,150 transMapEnsemblV5,641 transMapEstV5,105 transMapEstV5,119 transMapEstV5,610 transMapRefSeqV5,105 transMapRefSeqV5,119 transMapRefSeqV5,610 transMapRnaV5,105 transMapRnaV5,119 transMapRnaV5,610 transMapV5,211 transMapV5,225 transMapV5,716 uniprot,1795 hg19 uniprot,847 uniprot,860 hg38 uniprot,700 uniprot,843 uniprot,1177 uniprot,1367 uniprot,1909 hgdownload.soe.ucsc.edu cpgIslandExt,576 cpgIslandExtUnmasked,579 cpgIslandSuper,576 transMapEnsemblV5,660 transMapEstV5,629 transMapRefSeqV5,629 transMapRnaV5,629 transMapV5,735 uniprot,1814 uniprot,1906 uniprot,1916 hiatt refGene,356 xenoRefGene,321 hidden augustusGene,324 uniprot,182 uniprot,223 hide refGene,224 uniprot,659 uniprot,667 xenoRefGene,190 hierarchy chainNeoSch1,834 chainNetNeoSch1,837 chainNetRn6,822 chainRn6,819 netNeoSch1,834 netRn6,819 high gc5BaseBw,29 transMapV5,118 higher chainNeoSch1,866 chainNetNeoSch1,869 chainNetRn6,854 chainRn6,851 cpgIslandExt,157 cpgIslandExtUnmasked,160 cpgIslandSuper,157 netNeoSch1,866 netRn6,851 rmsk,230 transMapV5,146 higher-level chainNeoSch1,883 chainNetNeoSch1,886 chainNetRn6,871 chainRn6,868 netNeoSch1,883 netRn6,868 higher-scoring chainNeoSch1,827 chainNeoSch1,846 chainNetNeoSch1,830 chainNetNeoSch1,849 chainNetRn6,815 chainNetRn6,834 chainRn6,812 chainRn6,831 netNeoSch1,827 netNeoSch1,846 netRn6,812 netRn6,831 highest est,692 intronEst,773 mrna,408 refGene,282 uniprot,948 uniprot,1113 xenoRefGene,248 highest-scoring chainNeoSch1,404 chainNeoSch1,793 chainNetNeoSch1,407 chainNetNeoSch1,796 chainNetRn6,396 chainNetRn6,781 chainRn6,393 chainRn6,778 netNeoSch1,404 netNeoSch1,793 netRn6,393 netRn6,778 highlight est,333 gc5BaseBw,49 intronEst,414 mrna,279 highlighted est,303 est,321 intronEst,384 intronEst,402 mrna,249 mrna,267 uniprot,580 highly microsat,40 hillier cpgIslandExt,601 cpgIslandExtUnmasked,604 cpgIslandSuper,601 hinrichs chainNeoSch1,1062 chainNetNeoSch1,1065 chainNetRn6,1050 chainRn6,1047 netNeoSch1,1062 netRn6,1047 hiram gc5BaseBw,82 ucscToINSDC,51 his chainNeoSch1,960 chainNetNeoSch1,963 chainNetRn6,948 chainRn6,945 netNeoSch1,960 netRn6,945 honeybee1 augustusGene,217 horizontal nestedRepeats,130 nestedRepeats,150 hou chainNeoSch1,939 chainNetNeoSch1,942 chainNetRn6,927 chainRn6,924 netNeoSch1,939 netRn6,924 housekeeping cpgIslandExt,22 cpgIslandExtUnmasked,25 cpgIslandSuper,22 how chainNeoSch1,894 chainNeoSch1,911 chainNetNeoSch1,897 chainNetNeoSch1,914 chainNetRn6,882 chainNetRn6,899 chainRn6,879 chainRn6,896 netNeoSch1,894 netNeoSch1,911 netRn6,879 netRn6,896 rmsk,121 however cpgIslandExt,96 cpgIslandExtUnmasked,99 cpgIslandSuper,96 transMapEnsemblV5,485 transMapEstV5,454 transMapRefSeqV5,454 transMapRnaV5,454 transMapV5,560 http cpgIslandExt,575 cpgIslandExtUnmasked,578 cpgIslandSuper,575 nestedRepeats,332 rmsk,355 transMapEnsemblV5,659 transMapEstV5,628 transMapRefSeqV5,628 transMapRnaV5,628 transMapV5,734 uniprot,1813 https uniprot,1905 uniprot,1915 hub uniprot,711 uniprot,1672 uniprot,1679 hubbard ensGene,44 ensGene,168 hubley nestedRepeats,308 nestedRepeats,326 rmsk,331 rmsk,349 hum uniprot,2043 human augustusGene,205 augustusGene,210 augustusGene,276 chainNeoSch1,1079 chainNetNeoSch1,1082 chainNetRn6,1067 chainRn6,1064 genscan,217 nestedRepeats,404 netNeoSch1,1079 netRn6,1064 rmsk,427 transMapEnsemblV5,42 transMapEnsemblV5,362 transMapEnsemblV5,471 transMapEnsemblV5,738 transMapEnsemblV5,806 transMapEstV5,331 transMapEstV5,440 transMapEstV5,707 transMapEstV5,775 transMapRefSeqV5,331 transMapRefSeqV5,440 transMapRefSeqV5,707 transMapRefSeqV5,775 transMapRnaV5,331 transMapRnaV5,440 transMapRnaV5,707 transMapRnaV5,775 transMapV5,104 transMapV5,133 transMapV5,437 transMapV5,546 transMapV5,813 transMapV5,881 uniprot,699 uniprot,940 uniprot,2040 human-mouse chainNeoSch1,1114 chainNetNeoSch1,1117 chainNetRn6,1102 chainRn6,1099 netNeoSch1,1114 netRn6,1099 hybridizes est,497 intronEst,578 i est,750 est,774 intronEst,834 intronEst,858 mrna,467 mrna,491 i.e intronEst,70 id nestedRepeats,10 nestedRepeats,106 uniprot,1026 uniprot,1051 uniprot,1060 uniprot,1282 identical uniprot,1106 uniprot,1144 uniprot,1147 identified chainNeoSch1,955 chainNetNeoSch1,958 chainNetRn6,943 chainRn6,940 est,696 intronEst,777 netNeoSch1,955 netRn6,940 refGene,286 transMapEnsemblV5,512 transMapEstV5,481 transMapRefSeqV5,481 transMapRnaV5,481 transMapV5,587 xenoRefGene,252 identifier transMapEnsemblV5,483 transMapEstV5,452 transMapRefSeqV5,452 transMapRnaV5,452 transMapV5,558 identifiers transMapEnsemblV5,384 transMapEnsemblV5,443 transMapEnsemblV5,461 transMapEstV5,353 transMapEstV5,412 transMapEstV5,430 transMapRefSeqV5,353 transMapRefSeqV5,412 transMapRefSeqV5,430 transMapRnaV5,353 transMapRnaV5,412 transMapRnaV5,430 transMapV5,459 transMapV5,518 transMapV5,536 identifying cpgIslandExt,249 cpgIslandExtUnmasked,252 cpgIslandSuper,249 identity est,694 est,702 est,714 intronEst,775 intronEst,783 intronEst,795 microsat,71 mrna,410 mrna,418 mrna,430 nestedRepeats,187 nestedRepeats,222 refGene,284 refGene,292 refGene,304 xenoRefGene,250 xenoRefGene,258 xenoRefGene,270 ideogram cytoBandIdeo,3 cytoBandIdeo,4 ids uniprot,1292 if est,276 est,288 est,304 est,340 est,357 gap,76 intronEst,357 intronEst,369 intronEst,385 intronEst,421 intronEst,438 mrna,222 mrna,234 mrna,250 mrna,286 mrna,303 nestedRepeats,137 refGene,237 transMapEnsemblV5,244 transMapEstV5,213 transMapRefSeqV5,213 transMapRnaV5,213 transMapV5,319 uniprot,602 uniprot,688 uniprot,1030 uniprot,1077 uniprot,1230 uniprot,1261 uniprot,1323 uniprot,1442 xenoRefGene,203 ignored uniprot,1426 ii215-25 augustusGene,338 immediately cpgIslandExt,48 cpgIslandExtUnmasked,51 cpgIslandSuper,48 imperfect simpleRepeat,19 important uniprot,900 improve augustusGene,302 transMapEnsemblV5,770 transMapEstV5,739 transMapRefSeqV5,739 transMapRnaV5,739 transMapV5,845 improved chainNeoSch1,1028 chainNetNeoSch1,1031 chainNetRn6,1016 chainRn6,1013 netNeoSch1,1028 netRn6,1013 in augustusGene,101 chainNeoSch1,35 chainNeoSch1,100 chainNeoSch1,122 chainNeoSch1,154 chainNeoSch1,163 chainNeoSch1,177 chainNeoSch1,196 chainNeoSch1,199 chainNeoSch1,238 chainNeoSch1,259 chainNeoSch1,308 chainNeoSch1,341 chainNeoSch1,371 chainNeoSch1,383 chainNeoSch1,392 chainNeoSch1,410 chainNeoSch1,415 chainNeoSch1,424 chainNeoSch1,436 chainNeoSch1,450 chainNeoSch1,492 chainNeoSch1,509 chainNeoSch1,540 chainNeoSch1,558 chainNeoSch1,572 chainNeoSch1,609 chainNeoSch1,707 chainNeoSch1,795 chainNeoSch1,836 chainNeoSch1,844 chainNeoSch1,860 chainNeoSch1,893 chainNeoSch1,905 chainNeoSch1,1075 chainNetNeoSch1,38 chainNetNeoSch1,103 chainNetNeoSch1,125 chainNetNeoSch1,157 chainNetNeoSch1,166 chainNetNeoSch1,180 chainNetNeoSch1,199 chainNetNeoSch1,202 chainNetNeoSch1,241 chainNetNeoSch1,262 chainNetNeoSch1,311 chainNetNeoSch1,344 chainNetNeoSch1,374 chainNetNeoSch1,386 chainNetNeoSch1,395 chainNetNeoSch1,413 chainNetNeoSch1,418 chainNetNeoSch1,427 chainNetNeoSch1,439 chainNetNeoSch1,453 chainNetNeoSch1,495 chainNetNeoSch1,512 chainNetNeoSch1,543 chainNetNeoSch1,561 chainNetNeoSch1,575 chainNetNeoSch1,612 chainNetNeoSch1,710 chainNetNeoSch1,798 chainNetNeoSch1,839 chainNetNeoSch1,847 chainNetNeoSch1,863 chainNetNeoSch1,896 chainNetNeoSch1,908 chainNetNeoSch1,1078 chainNetRn6,35 chainNetRn6,99 chainNetRn6,119 chainNetRn6,151 chainNetRn6,158 chainNetRn6,172 chainNetRn6,191 chainNetRn6,194 chainNetRn6,233 chainNetRn6,254 chainNetRn6,299 chainNetRn6,333 chainNetRn6,363 chainNetRn6,375 chainNetRn6,384 chainNetRn6,402 chainNetRn6,407 chainNetRn6,416 chainNetRn6,428 chainNetRn6,442 chainNetRn6,484 chainNetRn6,501 chainNetRn6,532 chainNetRn6,550 chainNetRn6,564 chainNetRn6,599 chainNetRn6,695 chainNetRn6,783 chainNetRn6,824 chainNetRn6,832 chainNetRn6,848 chainNetRn6,881 chainNetRn6,893 chainNetRn6,1063 chainRn6,32 chainRn6,96 chainRn6,116 chainRn6,148 chainRn6,155 chainRn6,169 chainRn6,188 chainRn6,191 chainRn6,230 chainRn6,251 chainRn6,296 chainRn6,330 chainRn6,360 chainRn6,372 chainRn6,381 chainRn6,399 chainRn6,404 chainRn6,413 chainRn6,425 chainRn6,439 chainRn6,481 chainRn6,498 chainRn6,529 chainRn6,547 chainRn6,561 chainRn6,596 chainRn6,692 chainRn6,780 chainRn6,821 chainRn6,829 chainRn6,845 chainRn6,878 chainRn6,890 chainRn6,1060 cpgIslandExt,24 cpgIslandExt,58 cpgIslandExt,64 cpgIslandExt,87 cpgIslandExt,180 cpgIslandExt,189 cpgIslandExt,214 cpgIslandExt,297 cpgIslandExt,341 cpgIslandExt,375 cpgIslandExt,610 cpgIslandExtUnmasked,27 cpgIslandExtUnmasked,61 cpgIslandExtUnmasked,67 cpgIslandExtUnmasked,90 cpgIslandExtUnmasked,183 cpgIslandExtUnmasked,192 cpgIslandExtUnmasked,217 cpgIslandExtUnmasked,300 cpgIslandExtUnmasked,344 cpgIslandExtUnmasked,378 cpgIslandExtUnmasked,613 cpgIslandSuper,24 cpgIslandSuper,58 cpgIslandSuper,64 cpgIslandSuper,87 cpgIslandSuper,180 cpgIslandSuper,189 cpgIslandSuper,214 cpgIslandSuper,297 cpgIslandSuper,341 cpgIslandSuper,375 cpgIslandSuper,610 ensGene,37 ensGene,50 ensGene,83 ensGene,90 ensGene,95 est,21 est,34 est,57 est,148 est,169 est,192 est,202 est,220 est,273 est,395 est,528 est,576 est,685 gap,13 gap,25 gap,43 gap,73 gap,128 gc5BaseBw,5 gc5BaseBw,26 gc5BaseBw,43 genscan,101 genscan,150 genscan,162 genscan,165 genscan,184 genscan,188 genscan,198 genscan,216 gold,15 gold,27 gold,66 gold,127 gold,138 gold,146 intronEst,23 intronEst,46 intronEst,84 intronEst,98 intronEst,141 intronEst,229 intronEst,250 intronEst,273 intronEst,283 intronEst,301 intronEst,354 intronEst,476 intronEst,609 intronEst,657 intronEst,766 intronEst,802 microsat,42 microsat,49 mrna,19 mrna,38 mrna,94 mrna,115 mrna,138 mrna,148 mrna,166 mrna,219 mrna,401 nestedRepeats,61 nestedRepeats,64 nestedRepeats,75 nestedRepeats,115 nestedRepeats,156 nestedRepeats,167 nestedRepeats,241 nestedRepeats,339 nestedRepeats,367 nestedRepeats,381 nestedRepeats,402 netNeoSch1,35 netNeoSch1,100 netNeoSch1,122 netNeoSch1,154 netNeoSch1,163 netNeoSch1,177 netNeoSch1,196 netNeoSch1,199 netNeoSch1,238 netNeoSch1,259 netNeoSch1,308 netNeoSch1,341 netNeoSch1,371 netNeoSch1,383 netNeoSch1,392 netNeoSch1,410 netNeoSch1,415 netNeoSch1,424 netNeoSch1,436 netNeoSch1,450 netNeoSch1,492 netNeoSch1,509 netNeoSch1,540 netNeoSch1,558 netNeoSch1,572 netNeoSch1,609 netNeoSch1,707 netNeoSch1,795 netNeoSch1,836 netNeoSch1,844 netNeoSch1,860 netNeoSch1,893 netNeoSch1,905 netNeoSch1,1075 netRn6,32 netRn6,96 netRn6,116 netRn6,148 netRn6,155 netRn6,169 netRn6,188 netRn6,191 netRn6,230 netRn6,251 netRn6,296 netRn6,330 netRn6,360 netRn6,372 netRn6,381 netRn6,399 netRn6,404 netRn6,413 netRn6,425 netRn6,439 netRn6,481 netRn6,498 netRn6,529 netRn6,547 netRn6,561 netRn6,596 netRn6,692 netRn6,780 netRn6,821 netRn6,829 netRn6,845 netRn6,878 netRn6,890 netRn6,1060 refGene,275 rmsk,45 rmsk,63 rmsk,97 rmsk,100 rmsk,128 rmsk,139 rmsk,209 rmsk,270 rmsk,317 rmsk,362 rmsk,390 rmsk,404 rmsk,425 transMapEnsemblV5,33 transMapEnsemblV5,82 transMapEnsemblV5,89 transMapEnsemblV5,160 transMapEnsemblV5,335 transMapEnsemblV5,359 transMapEnsemblV5,367 transMapEnsemblV5,402 transMapEnsemblV5,412 transMapEnsemblV5,446 transMapEnsemblV5,492 transMapEnsemblV5,542 transMapEnsemblV5,584 transMapEstV5,31 transMapEstV5,51 transMapEstV5,58 transMapEstV5,129 transMapEstV5,304 transMapEstV5,328 transMapEstV5,336 transMapEstV5,371 transMapEstV5,381 transMapEstV5,415 transMapEstV5,461 transMapEstV5,511 transMapEstV5,553 transMapRefSeqV5,31 transMapRefSeqV5,51 transMapRefSeqV5,58 transMapRefSeqV5,129 transMapRefSeqV5,304 transMapRefSeqV5,328 transMapRefSeqV5,336 transMapRefSeqV5,371 transMapRefSeqV5,381 transMapRefSeqV5,415 transMapRefSeqV5,461 transMapRefSeqV5,511 transMapRefSeqV5,553 transMapRnaV5,31 transMapRnaV5,51 transMapRnaV5,58 transMapRnaV5,129 transMapRnaV5,304 transMapRnaV5,328 transMapRnaV5,336 transMapRnaV5,371 transMapRnaV5,381 transMapRnaV5,415 transMapRnaV5,461 transMapRnaV5,511 transMapRnaV5,553 transMapV5,30 transMapV5,52 transMapV5,59 transMapV5,76 transMapV5,235 transMapV5,410 transMapV5,434 transMapV5,442 transMapV5,477 transMapV5,487 transMapV5,521 transMapV5,567 transMapV5,617 transMapV5,659 uniprot,67 uniprot,148 uniprot,161 uniprot,177 uniprot,242 uniprot,291 uniprot,313 uniprot,427 uniprot,505 uniprot,509 uniprot,570 uniprot,581 uniprot,586 uniprot,591 uniprot,737 uniprot,755 uniprot,854 uniprot,870 uniprot,882 uniprot,1066 uniprot,1132 uniprot,1151 uniprot,1171 uniprot,1190 uniprot,1199 uniprot,1252 uniprot,1258 uniprot,1272 uniprot,1466 uniprot,1637 uniprot,1663 uniprot,1734 uniprot,1752 uniprot,1849 uniprot,1864 windowmaskerSdust,27 xenoRefGene,241 include est,130 est,335 est,359 intronEst,211 intronEst,416 intronEst,440 mrna,76 mrna,281 mrna,305 rmsk,159 rmsk,172 included augustusGene,160 cpgIslandExt,306 cpgIslandExtUnmasked,309 cpgIslandSuper,306 windowmaskerSdust,26 includes rmsk,198 uniprot,1587 including est,5 intronEst,120 rmsk,188 uniprot,1700 incorrect uniprot,1361 indels microsat,74 indicate chainNeoSch1,145 chainNeoSch1,253 chainNetNeoSch1,148 chainNetNeoSch1,256 chainNetRn6,142 chainNetRn6,248 chainRn6,139 chainRn6,245 est,68 mrna,49 nestedRepeats,153 netNeoSch1,145 netNeoSch1,253 netRn6,139 netRn6,245 indicates est,76 intronEst,147 intronEst,157 refGene,92 xenoRefGene,58 individual chainNeoSch1,250 chainNeoSch1,507 chainNetNeoSch1,253 chainNetNeoSch1,510 chainNetRn6,245 chainNetRn6,499 chainRn6,242 chainRn6,496 netNeoSch1,250 netNeoSch1,507 netRn6,242 netRn6,496 transMapEnsemblV5,600 transMapEstV5,569 transMapRefSeqV5,569 transMapRnaV5,569 transMapV5,675 information augustusGene,36 chainNeoSch1,470 chainNeoSch1,483 chainNeoSch1,489 chainNeoSch1,861 chainNetNeoSch1,473 chainNetNeoSch1,486 chainNetNeoSch1,492 chainNetNeoSch1,864 chainNetRn6,462 chainNetRn6,475 chainNetRn6,481 chainNetRn6,849 chainRn6,459 chainRn6,472 chainRn6,478 chainRn6,846 cpgIslandExt,542 cpgIslandExtUnmasked,545 cpgIslandSuper,542 ensGene,19 ensGene,159 est,75 est,410 est,434 gap,34 gc5BaseBw,55 genscan,51 genscan,126 gold,36 intronEst,156 intronEst,491 intronEst,515 microsat,97 mrna,347 mrna,373 nestedRepeats,53 nestedRepeats,301 netNeoSch1,470 netNeoSch1,483 netNeoSch1,489 netNeoSch1,861 netRn6,459 netRn6,472 netRn6,478 netRn6,846 refGene,65 refGene,209 rmsk,89 rmsk,324 simpleRepeat,58 transMapEnsemblV5,131 transMapEnsemblV5,148 transMapEnsemblV5,566 transMapEstV5,100 transMapEstV5,117 transMapEstV5,535 transMapRefSeqV5,100 transMapRefSeqV5,117 transMapRefSeqV5,535 transMapRnaV5,100 transMapRnaV5,117 transMapRnaV5,535 transMapV5,206 transMapV5,223 transMapV5,641 uniprot,678 uniprot,1842 uniprot,2038 xenoRefGene,175 initiate rmsk,316 initio augustusGene,4 augustusGene,17 input uniprot,1952 windowmaskerSdust,61 windowmaskerSdust,70 insdc ucscToINSDC,1 ucscToINSDC,4 ucscToINSDC,32 inserted chainNeoSch1,583 chainNeoSch1,917 chainNetNeoSch1,586 chainNetNeoSch1,920 chainNetRn6,575 chainNetRn6,905 chainRn6,572 chainRn6,902 netNeoSch1,583 netNeoSch1,917 netRn6,572 netRn6,902 insertion chainNeoSch1,162 chainNetNeoSch1,165 chainNetRn6,157 chainRn6,154 est,439 intronEst,520 mrna,378 netNeoSch1,162 netRn6,154 rmsk,223 insertions nestedRepeats,86 nestedRepeats,92 inside uniprot,560 inspection uniprot,1653 instead refGene,152 xenoRefGene,118 institute nestedRepeats,55 rmsk,91 instructions ensGene,117 transMapEnsemblV5,631 transMapEstV5,600 transMapRefSeqV5,600 transMapRnaV5,600 transMapV5,706 uniprot,1785 integrator cpgIslandExt,526 cpgIslandExtUnmasked,529 cpgIslandSuper,526 ensGene,71 transMapEnsemblV5,534 transMapEstV5,503 transMapRefSeqV5,503 transMapRnaV5,503 transMapV5,609 uniprot,1725 interactions uniprot,316 interactively cpgIslandExt,515 cpgIslandExtUnmasked,518 cpgIslandSuper,515 ensGene,63 transMapEnsemblV5,526 transMapEstV5,495 transMapRefSeqV5,495 transMapRnaV5,495 transMapV5,601 uniprot,1717 interest unipInterest,1 unipInterest,5 uniprot,299 intergenic genscan,47 international est,735 intronEst,819 mrna,452 transMapEnsemblV5,692 transMapEstV5,661 transMapRefSeqV5,661 transMapRnaV5,661 transMapV5,767 ucscToINSDC,5 ucscToINSDC,27 internet nestedRepeats,279 interrupted nestedRepeats,1 nestedRepeats,5 nestedRepeats,21 nestedRepeats,90 nestedRepeats,121 interspersed nestedRepeats,36 nestedRepeats,373 nestedRepeats,400 rmsk,26 rmsk,154 rmsk,162 rmsk,396 rmsk,423 intervals windowmaskerSdust,4 into chainNeoSch1,615 chainNeoSch1,627 chainNeoSch1,645 chainNeoSch1,820 chainNetNeoSch1,618 chainNetNeoSch1,630 chainNetNeoSch1,648 chainNetNeoSch1,823 chainNetRn6,605 chainNetRn6,617 chainNetRn6,633 chainNetRn6,808 chainRn6,602 chainRn6,614 chainRn6,630 chainRn6,805 cpgIslandExt,105 cpgIslandExtUnmasked,108 cpgIslandSuper,105 est,252 est,457 est,464 est,609 intronEst,333 intronEst,538 intronEst,545 intronEst,690 mrna,198 netNeoSch1,615 netNeoSch1,627 netNeoSch1,645 netNeoSch1,820 netRn6,602 netRn6,614 netRn6,630 netRn6,805 uniprot,57 windowmaskerSdust,80 intron augustusGene,88 augustusGene,330 est,658 intronEst,69 intronEst,739 introns chainNeoSch1,60 chainNetNeoSch1,63 chainNetRn6,60 chainRn6,57 est,675 genscan,45 intronEst,756 netNeoSch1,60 netRn6,57 inv chainNeoSch1,545 chainNetNeoSch1,548 chainNetRn6,537 chainRn6,534 netNeoSch1,545 netRn6,534 inversions chainNeoSch1,118 chainNeoSch1,184 chainNetNeoSch1,121 chainNetNeoSch1,187 chainNetRn6,115 chainNetRn6,179 chainRn6,112 chainRn6,176 netNeoSch1,118 netNeoSch1,184 netRn6,112 netRn6,176 inverted chainNeoSch1,879 chainNetNeoSch1,882 chainNetRn6,867 chainRn6,864 netNeoSch1,879 netRn6,864 involve chainNeoSch1,174 chainNetNeoSch1,177 chainNetRn6,169 chainRn6,166 netNeoSch1,174 netRn6,166 is chainNeoSch1,289 chainNeoSch1,311 chainNeoSch1,490 chainNetNeoSch1,292 chainNetNeoSch1,314 chainNetNeoSch1,493 chainNetRn6,282 chainNetRn6,302 chainNetRn6,482 chainRn6,279 chainRn6,299 chainRn6,479 cpgIslandExt,56 cpgIslandExt,113 cpgIslandExt,121 cpgIslandExt,130 cpgIslandExt,160 cpgIslandExt,203 cpgIslandExt,321 cpgIslandExt,330 cpgIslandExt,335 cpgIslandExt,347 cpgIslandExt,368 cpgIslandExt,404 cpgIslandExt,494 cpgIslandExtUnmasked,59 cpgIslandExtUnmasked,116 cpgIslandExtUnmasked,124 cpgIslandExtUnmasked,133 cpgIslandExtUnmasked,163 cpgIslandExtUnmasked,206 cpgIslandExtUnmasked,324 cpgIslandExtUnmasked,333 cpgIslandExtUnmasked,338 cpgIslandExtUnmasked,350 cpgIslandExtUnmasked,371 cpgIslandExtUnmasked,407 cpgIslandExtUnmasked,497 cpgIslandSuper,56 cpgIslandSuper,113 cpgIslandSuper,121 cpgIslandSuper,130 cpgIslandSuper,160 cpgIslandSuper,203 cpgIslandSuper,321 cpgIslandSuper,330 cpgIslandSuper,335 cpgIslandSuper,347 cpgIslandSuper,368 cpgIslandSuper,404 cpgIslandSuper,494 est,292 est,308 est,344 est,361 est,450 est,462 est,471 est,491 est,620 est,663 gap,46 gap,91 gap,98 gap,106 gc5BaseBw,32 gold,45 gold,119 gold,125 intronEst,102 intronEst,373 intronEst,389 intronEst,425 intronEst,442 intronEst,531 intronEst,543 intronEst,552 intronEst,572 intronEst,701 intronEst,744 microsat,88 mrna,238 mrna,254 mrna,290 mrna,307 nestedRepeats,59 nestedRepeats,123 nestedRepeats,198 nestedRepeats,219 nestedRepeats,337 netNeoSch1,289 netNeoSch1,311 netNeoSch1,490 netRn6,279 netRn6,299 netRn6,479 rmsk,95 rmsk,360 simpleRepeat,28 transMapEnsemblV5,39 transMapEnsemblV5,275 transMapEnsemblV5,418 transMapEnsemblV5,422 transMapEnsemblV5,434 transMapEnsemblV5,480 transMapEstV5,244 transMapEstV5,387 transMapEstV5,391 transMapEstV5,403 transMapEstV5,449 transMapRefSeqV5,244 transMapRefSeqV5,387 transMapRefSeqV5,391 transMapRefSeqV5,403 transMapRefSeqV5,449 transMapRnaV5,244 transMapRnaV5,387 transMapRnaV5,391 transMapRnaV5,403 transMapRnaV5,449 transMapV5,350 transMapV5,493 transMapV5,497 transMapV5,509 transMapV5,555 uniprot,159 uniprot,222 uniprot,417 uniprot,626 uniprot,707 uniprot,839 uniprot,911 uniprot,958 uniprot,972 uniprot,1052 uniprot,1081 uniprot,1209 uniprot,1245 uniprot,1256 uniprot,1264 uniprot,1283 uniprot,1334 uniprot,1390 uniprot,1564 uniprot,1578 uniprot,1603 uniprot,1630 uniprot,1732 windowmaskerSdust,25 windowmaskerSdust,39 island cpgIslandExt,343 cpgIslandExtUnmasked,346 cpgIslandSuper,343 islands cpgIslandExt,2 cpgIslandExt,4 cpgIslandExt,5 cpgIslandExt,16 cpgIslandExt,27 cpgIslandExt,148 cpgIslandExt,177 cpgIslandExt,226 cpgIslandExt,320 cpgIslandExt,507 cpgIslandExt,609 cpgIslandExtUnmasked,4 cpgIslandExtUnmasked,8 cpgIslandExtUnmasked,19 cpgIslandExtUnmasked,30 cpgIslandExtUnmasked,151 cpgIslandExtUnmasked,180 cpgIslandExtUnmasked,229 cpgIslandExtUnmasked,323 cpgIslandExtUnmasked,510 cpgIslandExtUnmasked,612 cpgIslandSuper,2 cpgIslandSuper,4 cpgIslandSuper,5 cpgIslandSuper,16 cpgIslandSuper,27 cpgIslandSuper,148 cpgIslandSuper,177 cpgIslandSuper,226 cpgIslandSuper,320 cpgIslandSuper,507 cpgIslandSuper,609 isoform unipAliSwissprot,13 uniprot,157 uniprot,186 uniprot,671 isoforms unipAliSwissprot,17 uniprot,145 uniprot,164 isolated est,451 intronEst,532 issue est,765 est,791 intronEst,849 intronEst,875 mrna,482 mrna,508 refGene,388 refGene,422 uniprot,2004 xenoRefGene,353 xenoRefGene,387 it chainNeoSch1,95 chainNeoSch1,288 chainNeoSch1,544 chainNeoSch1,556 chainNetNeoSch1,98 chainNetNeoSch1,291 chainNetNeoSch1,547 chainNetNeoSch1,559 chainNetRn6,94 chainNetRn6,281 chainNetRn6,536 chainNetRn6,548 chainRn6,91 chainRn6,278 chainRn6,533 chainRn6,545 est,90 est,104 est,513 gap,97 genscan,143 intronEst,171 intronEst,185 intronEst,594 netNeoSch1,95 netNeoSch1,288 netNeoSch1,544 netNeoSch1,556 netRn6,91 netRn6,278 netRn6,533 netRn6,545 uniprot,228 uniprot,625 uniprot,1586 item nestedRepeats,197 refGene,109 xenoRefGene,75 items chainNeoSch1,508 chainNetNeoSch1,511 chainNetRn6,500 chainRn6,497 est,62 est,135 est,145 est,339 intronEst,216 intronEst,226 intronEst,420 mrna,43 mrna,81 mrna,91 mrna,285 nestedRepeats,171 nestedRepeats,180 netNeoSch1,508 netRn6,497 refGene,136 xenoRefGene,102 its cpgIslandExt,509 cpgIslandExtUnmasked,512 cpgIslandSuper,509 nestedRepeats,204 uniprot,230 uniprot,762 uniprot,1316 uniprot,1348 itself uniprot,715 j cpgIslandExt,613 cpgIslandExtUnmasked,616 cpgIslandSuper,613 ensGene,183 est,754 est,778 genscan,220 intronEst,838 intronEst,862 mrna,471 mrna,495 nestedRepeats,341 refGene,367 rmsk,364 transMapEnsemblV5,785 transMapEstV5,754 transMapRefSeqV5,754 transMapRnaV5,754 transMapV5,860 xenoRefGene,332 jan chainNeoSch1,1121 chainNetNeoSch1,1124 chainNetRn6,1109 chainRn6,1106 ensGene,199 est,762 est,787 intronEst,846 intronEst,871 microsat,129 mrna,479 mrna,504 netNeoSch1,1121 netRn6,1106 refGene,385 refGene,418 simpleRepeat,89 uniprot,2001 windowmaskerSdust,108 xenoRefGene,350 xenoRefGene,383 jim chainNeoSch1,977 chainNeoSch1,1004 chainNeoSch1,1022 chainNetNeoSch1,980 chainNetNeoSch1,1007 chainNetNeoSch1,1025 chainNetRn6,965 chainNetRn6,992 chainNetRn6,1010 chainRn6,962 chainRn6,989 chainRn6,1007 netNeoSch1,977 netNeoSch1,1004 netNeoSch1,1022 netRn6,962 netRn6,989 netRn6,1007 joined chainNeoSch1,130 chainNetNeoSch1,133 chainNetRn6,127 chainRn6,124 nestedRepeats,7 nestedRepeats,18 nestedRepeats,103 nestedRepeats,128 netNeoSch1,130 netRn6,124 journal nestedRepeats,349 rmsk,372 jul chainNetRn6,5 chainNetRn6,70 chainNetRn6,305 chainNetRn6Viewchain,3 chainNetRn6Viewnet,3 chainRn6,4 chainRn6,67 chainRn6,302 cpgIslandExt,617 cpgIslandExtUnmasked,620 cpgIslandSuper,617 netRn6,4 netRn6,67 netRn6,302 jun chainNeoSch1,8 chainNeoSch1,72 chainNeoSch1,314 chainNetNeoSch1,9 chainNetNeoSch1,75 chainNetNeoSch1,317 chainNetNeoSch1Viewchain,5 chainNetNeoSch1Viewnet,5 netNeoSch1,8 netNeoSch1,72 netNeoSch1,314 jurka nestedRepeats,62 nestedRepeats,340 rmsk,98 rmsk,363 jz transMapEnsemblV5,787 transMapEstV5,756 transMapRefSeqV5,756 transMapRnaV5,756 transMapV5,862 k augustusGene,268 est,748 intronEst,832 mrna,465 k1 cpgIslandExt,484 cpgIslandExtUnmasked,487 cpgIslandSuper,484 k2 cpgIslandExt,486 cpgIslandExtUnmasked,489 cpgIslandSuper,486 karlin genscan,148 genscan,209 karsch-mizrachi est,749 est,773 intronEst,833 intronEst,857 mrna,466 mrna,490 kasif genscan,193 kd refGene,353 refGene,395 xenoRefGene,318 xenoRefGene,360 kd-tree chainNeoSch1,651 chainNetNeoSch1,654 chainNetRn6,639 chainRn6,636 netNeoSch1,651 netRn6,636 kd-trees chainNeoSch1,669 chainNetNeoSch1,672 chainNetRn6,657 chainRn6,654 netNeoSch1,669 netRn6,654 keep cpgIslandExt,125 cpgIslandExtUnmasked,128 cpgIslandSuper,125 uniprot,1486 kent chainNeoSch1,978 chainNeoSch1,1005 chainNeoSch1,1023 chainNeoSch1,1058 chainNeoSch1,1100 chainNetNeoSch1,981 chainNetNeoSch1,1008 chainNetNeoSch1,1026 chainNetNeoSch1,1061 chainNetNeoSch1,1103 chainNetRn6,966 chainNetRn6,993 chainNetRn6,1011 chainNetRn6,1046 chainNetRn6,1088 chainRn6,963 chainRn6,990 chainRn6,1008 chainRn6,1043 chainRn6,1085 est,797 intronEst,881 mrna,514 netNeoSch1,978 netNeoSch1,1005 netNeoSch1,1023 netNeoSch1,1058 netNeoSch1,1100 netRn6,963 netRn6,990 netRn6,1008 netRn6,1043 netRn6,1085 refGene,334 xenoRefGene,300 kept est,720 mrna,436 refGene,310 xenoRefGene,276 km refGene,371 xenoRefGene,336 known chainNeoSch1,928 chainNetNeoSch1,931 chainNetRn6,916 chainRn6,913 gold,121 netNeoSch1,928 netRn6,913 refGene,15 xenoRefGene,14 l cpgIslandExt,600 cpgIslandExtUnmasked,603 cpgIslandSuper,600 ensGene,179 transMapEnsemblV5,719 transMapEstV5,688 transMapRefSeqV5,688 transMapRnaV5,688 transMapV5,794 lab augustusGene,252 label genscan,98 refGene,133 refGene,145 refGene,168 xenoRefGene,99 xenoRefGene,111 xenoRefGene,134 labeled nestedRepeats,132 refGene,138 uniprot,457 xenoRefGene,104 labeling est,384 intronEst,465 labels nestedRepeats,161 refGene,110 xenoRefGene,76 landrum refGene,368 xenoRefGene,333 langton transMapEnsemblV5,718 transMapEstV5,687 transMapRefSeqV5,687 transMapRnaV5,687 transMapV5,793 largely chainNeoSch1,149 chainNetNeoSch1,152 chainNetRn6,146 chainRn6,143 netNeoSch1,149 netRn6,143 larger intronEst,149 largest chainNeoSch1,403 chainNetNeoSch1,406 chainNetRn6,395 chainRn6,392 netNeoSch1,403 netRn6,392 lastz chainNeoSch1,602 chainNeoSch1,777 chainNeoSch1,926 chainNetNeoSch1,605 chainNetNeoSch1,780 chainNetNeoSch1,929 chainNetRn6,592 chainNetRn6,765 chainNetRn6,914 chainRn6,589 chainRn6,762 chainRn6,911 netNeoSch1,602 netNeoSch1,777 netNeoSch1,926 netRn6,589 netRn6,762 netRn6,911 transMapV5,46 lau transMapEnsemblV5,730 transMapEstV5,699 transMapRefSeqV5,699 transMapRnaV5,699 transMapV5,805 lavtoaxt chainNeoSch1,620 chainNetNeoSch1,623 chainNetRn6,610 chainRn6,607 netNeoSch1,620 netRn6,607 least est,711 intronEst,66 intronEst,81 intronEst,792 microsat,29 microsat,78 mrna,427 refGene,301 xenoRefGene,267 lee uniprot,1955 length augustusGene,82 cpgIslandExt,268 cpgIslandExt,360 cpgIslandExt,395 cpgIslandExtUnmasked,271 cpgIslandExtUnmasked,363 cpgIslandExtUnmasked,398 cpgIslandSuper,268 cpgIslandSuper,360 cpgIslandSuper,395 est,35 est,659 genscan,39 intronEst,47 intronEst,85 intronEst,740 less refGene,265 transMapEnsemblV5,372 transMapEstV5,341 transMapRefSeqV5,341 transMapRnaV5,341 transMapV5,447 uniprot,680 xenoRefGene,231 level chainNeoSch1,398 chainNeoSch1,432 chainNeoSch1,437 chainNeoSch1,444 chainNeoSch1,502 chainNeoSch1,529 chainNeoSch1,542 chainNeoSch1,574 chainNetNeoSch1,401 chainNetNeoSch1,435 chainNetNeoSch1,440 chainNetNeoSch1,447 chainNetNeoSch1,505 chainNetNeoSch1,532 chainNetNeoSch1,545 chainNetNeoSch1,577 chainNetRn6,390 chainNetRn6,424 chainNetRn6,429 chainNetRn6,436 chainNetRn6,494 chainNetRn6,521 chainNetRn6,534 chainNetRn6,566 chainRn6,387 chainRn6,421 chainRn6,426 chainRn6,433 chainRn6,491 chainRn6,518 chainRn6,531 chainRn6,563 est,703 intronEst,95 intronEst,784 mrna,419 netNeoSch1,398 netNeoSch1,432 netNeoSch1,437 netNeoSch1,444 netNeoSch1,502 netNeoSch1,529 netNeoSch1,542 netNeoSch1,574 netRn6,387 netRn6,421 netRn6,426 netRn6,433 netRn6,491 netRn6,518 netRn6,531 netRn6,563 refGene,94 refGene,293 rmsk,205 xenoRefGene,60 xenoRefGene,259 levels cpgIslandExt,158 cpgIslandExtUnmasked,161 cpgIslandSuper,158 libraries est,557 intronEst,638 nestedRepeats,258 nestedRepeats,317 rmsk,340 library nestedRepeats,47 rmsk,83 lifted uniprot,1492 lifting uniprot,1843 liftover uniprot,887 uniprot,1878 uniprot,1897 uniprot,1920 uniprot,1924 uniprot,1932 light cpgIslandExt,9 cpgIslandExtUnmasked,12 cpgIslandSuper,9 refGene,103 unipAliSwissprot,14 uniprot,506 uniprot,592 xenoRefGene,69 light-blue uniprot,178 lighter rmsk,237 like chainNeoSch1,51 chainNeoSch1,59 chainNetNeoSch1,54 chainNetNeoSch1,62 chainNetRn6,51 chainNetRn6,59 chainRn6,48 chainRn6,56 ensGene,148 netNeoSch1,51 netNeoSch1,59 netRn6,48 netRn6,56 uniprot,1541 likely augustusGene,111 microsat,17 transMapV5,93 line chainNeoSch1,480 chainNetNeoSch1,483 chainNetRn6,472 chainRn6,469 gap,105 gold,124 nestedRepeats,151 netNeoSch1,480 netRn6,469 rmsk,165 uniprot,1872 uniprot,1876 line-up chainNeoSch1,547 chainNetNeoSch1,550 chainNetRn6,539 chainRn6,536 netNeoSch1,547 netRn6,536 line-ups chainNeoSch1,532 chainNetNeoSch1,535 chainNetRn6,524 chainRn6,521 netNeoSch1,532 netRn6,521 lineage transMapEnsemblV5,807 transMapEstV5,776 transMapRefSeqV5,776 transMapRnaV5,776 transMapV5,882 lineage-specific chainNeoSch1,952 chainNetNeoSch1,955 chainNetRn6,940 chainRn6,937 netNeoSch1,952 netRn6,937 linear chainNeoSch1,711 chainNetNeoSch1,714 chainNetRn6,699 chainRn6,696 netNeoSch1,711 netRn6,696 lineargap chainNeoSch1,717 chainNetNeoSch1,720 chainNetRn6,705 chainRn6,702 netNeoSch1,717 netRn6,702 lines chainNeoSch1,137 chainNeoSch1,144 chainNeoSch1,168 chainNeoSch1,460 chainNetNeoSch1,140 chainNetNeoSch1,147 chainNetNeoSch1,171 chainNetNeoSch1,463 chainNetRn6,134 chainNetRn6,141 chainNetRn6,163 chainNetRn6,452 chainRn6,131 chainRn6,138 chainRn6,160 chainRn6,449 nestedRepeats,131 netNeoSch1,137 netNeoSch1,144 netNeoSch1,168 netNeoSch1,460 netRn6,131 netRn6,138 netRn6,160 netRn6,449 link gc5BaseBw,63 uniprot,491 uniprot,1675 linux.x86_64 cpgIslandExt,579 cpgIslandExtUnmasked,582 cpgIslandSuper,579 uniprot,1919 lipid uniprot,346 lipman est,751 est,775 intronEst,835 intronEst,859 mrna,468 mrna,492 lipoification uniprot,577 list est,209 intronEst,290 mrna,155 uniprot,979 uniprot,1165 uniprot,1831 listed ensGene,49 literature uniprot,434 lm uniprot,2019 loaded windowmaskerSdust,79 local chainNeoSch1,117 chainNeoSch1,190 chainNetNeoSch1,120 chainNetNeoSch1,193 chainNetRn6,114 chainNetRn6,185 chainRn6,111 chainRn6,182 ensGene,73 nestedRepeats,98 netNeoSch1,117 netNeoSch1,190 netRn6,111 netRn6,182 located simpleRepeat,21 location chainNeoSch1,258 chainNetNeoSch1,261 chainNetRn6,253 chainRn6,250 netNeoSch1,258 netRn6,250 transMapEnsemblV5,401 transMapEnsemblV5,411 transMapEnsemblV5,478 transMapEstV5,370 transMapEstV5,380 transMapEstV5,447 transMapRefSeqV5,370 transMapRefSeqV5,380 transMapRefSeqV5,447 transMapRnaV5,370 transMapRnaV5,380 transMapRnaV5,447 transMapV5,476 transMapV5,486 transMapV5,553 uniprot,554 uniprot,767 uniprot,1417 locations gap,3 transMapEnsemblV5,490 transMapEstV5,459 transMapRefSeqV5,459 transMapRnaV5,459 transMapV5,565 uniprot,451 logic est,287 intronEst,368 mrna,233 long est,674 intronEst,755 rmsk,161 rmsk,166 long-established transMapEnsemblV5,802 transMapEstV5,771 transMapRefSeqV5,771 transMapRnaV5,771 transMapV5,877 longer chainNeoSch1,87 chainNetNeoSch1,90 chainNetRn6,86 chainRn6,83 netNeoSch1,87 netRn6,83 longest chainNeoSch1,525 chainNetNeoSch1,528 chainNetRn6,517 chainRn6,514 netNeoSch1,525 netRn6,514 look chainNeoSch1,50 chainNetNeoSch1,53 chainNetRn6,50 chainRn6,47 netNeoSch1,50 netRn6,47 loose chainNetRn6,706 chainRn6,703 netRn6,703 losses transMapEnsemblV5,800 transMapEstV5,769 transMapRefSeqV5,769 transMapRnaV5,769 transMapV5,875 lot uniprot,1950 low nestedRepeats,39 rmsk,29 rmsk,181 lowe transMapEnsemblV5,790 transMapEstV5,759 transMapRefSeqV5,759 transMapRnaV5,759 transMapV5,865 lower chainNeoSch1,501 chainNetNeoSch1,504 chainNetRn6,493 chainRn6,490 netNeoSch1,501 netRn6,490 lower-level chainNeoSch1,868 chainNeoSch1,874 chainNetNeoSch1,871 chainNetNeoSch1,877 chainNetRn6,856 chainNetRn6,862 chainRn6,853 chainRn6,859 netNeoSch1,868 netNeoSch1,874 netRn6,853 netRn6,859 ls-snp uniprot,1536 ltr rmsk,170 m augustusGene,287 augustusGene,289 augustusGene,317 cpgIslandExt,605 cpgIslandExt,607 cpgIslandExtUnmasked,608 cpgIslandExtUnmasked,610 cpgIslandSuper,605 cpgIslandSuper,607 est,746 intronEst,830 mrna,463 transMapEnsemblV5,714 transMapEnsemblV5,721 transMapEnsemblV5,755 transMapEnsemblV5,757 transMapEnsemblV5,789 transMapEstV5,683 transMapEstV5,690 transMapEstV5,724 transMapEstV5,726 transMapEstV5,758 transMapRefSeqV5,683 transMapRefSeqV5,690 transMapRefSeqV5,724 transMapRefSeqV5,726 transMapRefSeqV5,758 transMapRnaV5,683 transMapRnaV5,690 transMapRnaV5,724 transMapRnaV5,726 transMapRnaV5,758 transMapV5,789 transMapV5,796 transMapV5,830 transMapV5,832 transMapV5,864 made rmsk,110 transMapEnsemblV5,393 transMapEstV5,362 transMapRefSeqV5,362 transMapRnaV5,362 transMapV5,468 uniprot,931 uniprot,938 maglott refGene,398 xenoRefGene,363 mailing uniprot,1830 main unipAliSwissprot,12 uniprot,156 uniprot,1548 maintained uniprot,719 make est,446 est,512 gold,75 intronEst,527 intronEst,593 refGene,50 rmsk,123 transMapEnsemblV5,427 transMapEstV5,396 transMapRefSeqV5,396 transMapRnaV5,396 transMapV5,502 uniprot,1406 makedb rmsk,131 making uniprot,1978 mammalian nestedRepeats,368 nestedRepeats,382 refGene,378 rmsk,391 rmsk,405 xenoRefGene,343 manner uniprot,1469 manual uniprot,1652 many chainNeoSch1,411 chainNetNeoSch1,414 chainNetRn6,403 chainRn6,400 est,144 intronEst,110 intronEst,225 mrna,90 netNeoSch1,411 netRn6,400 uniprot,932 uniprot,1124 map chainNeoSch1,339 chainNetNeoSch1,342 chainNetRn6,331 chainRn6,328 netNeoSch1,339 netRn6,328 transMapEnsemblV5,292 transMapEstV5,261 transMapRefSeqV5,261 transMapRnaV5,261 transMapV5,367 uniprot,758 uniprot,1885 mapped augustusGene,298 nestedRepeats,233 transMapEnsemblV5,378 transMapEnsemblV5,410 transMapEnsemblV5,468 transMapEnsemblV5,766 transMapEstV5,347 transMapEstV5,379 transMapEstV5,437 transMapEstV5,735 transMapRefSeqV5,347 transMapRefSeqV5,379 transMapRefSeqV5,437 transMapRefSeqV5,735 transMapRnaV5,347 transMapRnaV5,379 transMapRnaV5,437 transMapRnaV5,735 transMapV5,130 transMapV5,453 transMapV5,485 transMapV5,543 transMapV5,841 uniprot,26 uniprot,97 uniprot,117 uniprot,132 uniprot,200 uniprot,213 uniprot,632 uniprot,1517 mapping cytoBandIdeo,7 gap,4 gc5BaseBw,8 gold,5 transMapEnsemblV5,265 transMapEnsemblV5,285 transMapEnsemblV5,298 transMapEstV5,234 transMapEstV5,254 transMapEstV5,267 transMapRefSeqV5,234 transMapRefSeqV5,254 transMapRefSeqV5,267 transMapRnaV5,234 transMapRnaV5,254 transMapRnaV5,267 transMapV5,340 transMapV5,360 transMapV5,373 ucscToINSDC,10 uniprot,725 uniprot,752 uniprot,775 uniprot,904 uniprot,1213 uniprot,1322 uniprot,1613 uniprot,1853 mappings transMapEnsemblV5,7 transMapEnsemblV5,500 transMapEstV5,5 transMapEstV5,469 transMapRefSeqV5,6 transMapRefSeqV5,469 transMapRnaV5,6 transMapRnaV5,469 transMapV5,575 uniprot,1362 maps transMapEnsemblV5,474 transMapEnsemblV5,487 transMapEstV5,443 transMapEstV5,456 transMapRefSeqV5,443 transMapRefSeqV5,456 transMapRnaV5,443 transMapRnaV5,456 transMapV5,71 transMapV5,549 transMapV5,562 mar augustusGene,309 transMapEnsemblV5,777 transMapEstV5,746 transMapRefSeqV5,746 transMapRnaV5,746 transMapV5,852 mario augustusGene,102 augustusGene,283 mark est,533 intronEst,614 transMapEnsemblV5,679 transMapEstV5,648 transMapRefSeqV5,648 transMapRnaV5,648 transMapV5,754 uniprot,1539 uniprot,1956 markers microsat,23 markov augustusGene,325 masked cpgIslandExt,192 cpgIslandExt,198 cpgIslandExt,328 cpgIslandExtUnmasked,195 cpgIslandExtUnmasked,201 cpgIslandExtUnmasked,331 cpgIslandSuper,192 cpgIslandSuper,198 cpgIslandSuper,328 rmsk,71 windowmaskerSdust,5 windowmaskerSdust,16 masker windowmaskerSdust,102 masking cpgIslandExt,304 cpgIslandExtUnmasked,307 cpgIslandSuper,304 maskoutfa cpgIslandExt,414 cpgIslandExtUnmasked,417 cpgIslandSuper,414 match chainNeoSch1,263 chainNeoSch1,526 chainNeoSch1,564 chainNetNeoSch1,266 chainNetNeoSch1,529 chainNetNeoSch1,567 chainNetRn6,258 chainNetRn6,518 chainNetRn6,556 chainRn6,255 chainRn6,515 chainRn6,553 est,81 est,297 est,312 est,353 est,371 intronEst,162 intronEst,378 intronEst,393 intronEst,434 intronEst,452 mrna,243 mrna,258 mrna,299 mrna,317 netNeoSch1,263 netNeoSch1,526 netNeoSch1,564 netRn6,255 netRn6,515 netRn6,553 uniprot,1305 uniprot,1341 matches est,69 mrna,50 matching chainNeoSch1,266 chainNetNeoSch1,269 chainNetRn6,261 chainRn6,258 est,87 intronEst,168 netNeoSch1,266 netRn6,258 uniprot,1068 uniprot,1075 matrix chainNeoSch1,681 chainNeoSch1,713 chainNetNeoSch1,684 chainNetNeoSch1,716 chainNetRn6,669 chainNetRn6,701 chainRn6,666 chainRn6,698 netNeoSch1,681 netNeoSch1,713 netRn6,666 netRn6,698 mature est,503 intronEst,584 unipChain,3 uniprot,251 uniprot,292 maximally chainNeoSch1,673 chainNetNeoSch1,676 chainNetRn6,661 chainRn6,658 cpgIslandExt,250 cpgIslandExtUnmasked,253 cpgIslandSuper,250 netNeoSch1,673 netRn6,658 maximilian uniprot,1944 maximum est,657 intronEst,738 maxtracks augustusGene,139 may chainNeoSch1,181 chainNeoSch1,440 chainNetNeoSch1,184 chainNetNeoSch1,443 chainNetRn6,176 chainNetRn6,432 chainRn6,173 chainRn6,429 cpgIslandExt,36 cpgIslandExtUnmasked,39 cpgIslandSuper,36 est,140 est,259 est,269 est,377 est,428 est,508 est,510 est,522 est,524 est,544 est,668 gc5BaseBw,40 intronEst,221 intronEst,340 intronEst,350 intronEst,458 intronEst,509 intronEst,589 intronEst,591 intronEst,603 intronEst,605 intronEst,625 intronEst,749 mrna,86 mrna,205 mrna,215 mrna,323 mrna,367 nestedRepeats,268 nestedRepeats,290 netNeoSch1,181 netNeoSch1,440 netRn6,173 netRn6,429 rmsk,297 rmsk,307 simpleRepeat,43 transMapEnsemblV5,107 transMapEnsemblV5,142 transMapEstV5,76 transMapEstV5,111 transMapRefSeqV5,76 transMapRefSeqV5,111 transMapRnaV5,76 transMapRnaV5,111 transMapV5,182 transMapV5,217 uniprot,2046 mcgarvey refGene,370 xenoRefGene,335 md5 uniprot,1601 mdash est,482 est,486 intronEst,563 intronEst,567 mediating uniprot,314 medium chainNeoSch1,718 chainNetNeoSch1,721 netNeoSch1,718 refGene,105 xenoRefGene,71 mellifera augustusGene,216 mementos nestedRepeats,377 rmsk,400 menu refGene,206 xenoRefGene,172 method ensGene,120 uniprot,726 uniprot,753 uniprot,776 methods augustusGene,46 chainNeoSch1,576 chainNeoSch1,781 chainNetNeoSch1,579 chainNetNeoSch1,784 chainNetRn6,568 chainNetRn6,769 chainRn6,565 chainRn6,766 cpgIslandExt,224 cpgIslandExtUnmasked,227 cpgIslandSuper,224 ensGene,29 ensGene,35 est,444 genscan,130 genscan,197 intronEst,525 microsat,45 mrna,383 nestedRepeats,244 netNeoSch1,576 netNeoSch1,781 netRn6,565 netRn6,766 refGene,249 rmsk,286 simpleRepeat,55 transMapEnsemblV5,151 transMapEstV5,120 transMapRefSeqV5,120 transMapRnaV5,120 transMapV5,226 uniprot,777 windowmaskerSdust,46 xenoRefGene,215 methylated cpgIslandExt,71 cpgIslandExt,100 cpgIslandExt,132 cpgIslandExtUnmasked,74 cpgIslandExtUnmasked,103 cpgIslandExtUnmasked,135 cpgIslandSuper,71 cpgIslandSuper,100 cpgIslandSuper,132 methylation cpgIslandExt,73 cpgIslandExtUnmasked,76 cpgIslandSuper,73 micro-satellites rmsk,180 microsatellite microsat,1 microsat,22 microsatellites microsat,2 might est,105 est,677 intronEst,186 intronEst,758 miklem cpgIslandExt,598 cpgIslandExtUnmasked,601 cpgIslandSuper,598 miller chainNeoSch1,946 chainNeoSch1,983 chainNeoSch1,1044 chainNeoSch1,1064 chainNeoSch1,1112 chainNetNeoSch1,949 chainNetNeoSch1,986 chainNetNeoSch1,1047 chainNetNeoSch1,1067 chainNetNeoSch1,1115 chainNetRn6,934 chainNetRn6,971 chainNetRn6,1032 chainNetRn6,1052 chainNetRn6,1100 chainRn6,931 chainRn6,968 chainRn6,1029 chainRn6,1049 chainRn6,1097 netNeoSch1,946 netNeoSch1,983 netNeoSch1,1044 netNeoSch1,1064 netNeoSch1,1112 netRn6,931 netRn6,968 netRn6,1029 netRn6,1049 netRn6,1097 minexonintronprob augustusGene,135 minimum chainNeoSch1,694 chainNetNeoSch1,697 chainNetRn6,682 chainRn6,679 netNeoSch1,694 netRn6,679 minmeanexonintronprob augustusGene,137 minmei chainNeoSch1,938 chainNetNeoSch1,941 chainNetRn6,926 chainRn6,923 netNeoSch1,938 netRn6,923 mismatch rmsk,218 misplacements uniprot,853 mj refGene,369 xenoRefGene,334 mk_counts windowmaskerSdust,59 mode chainNeoSch1,395 chainNetNeoSch1,398 chainNetRn6,387 chainRn6,384 est,60 est,125 gold,68 intronEst,144 intronEst,206 mrna,41 mrna,71 nestedRepeats,119 nestedRepeats,160 nestedRepeats,169 netNeoSch1,395 netRn6,384 rmsk,142 model augustusGene,121 augustusGene,326 genscan,140 modeling genscan,182 models augustusGene,49 augustusGene,65 augustusGene,97 augustusGene,145 augustusGene,178 genscan,158 uniprot,733 modes chainNeoSch1,248 chainNetNeoSch1,251 chainNetRn6,243 chainRn6,240 netNeoSch1,248 netRn6,240 modification cpgIslandExt,591 cpgIslandExtUnmasked,594 cpgIslandSuper,591 modifications unipModif,2 unipModif,6 uniprot,340 uniprot,574 modified rmsk,57 uniprot,343 modsnp uniprot,2030 moiety-binding uniprot,347 mol cpgIslandExt,614 cpgIslandExtUnmasked,617 cpgIslandSuper,614 genscan,221 molecular genscan,199 monk chainNeoSch1,2 chainNeoSch1,6 chainNeoSch1,70 chainNeoSch1,103 chainNeoSch1,157 chainNeoSch1,277 chainNeoSch1,304 chainNeoSch1,587 chainNeoSch1,637 chainNetNeoSch1,2 chainNetNeoSch1,7 chainNetNeoSch1,73 chainNetNeoSch1,106 chainNetNeoSch1,160 chainNetNeoSch1,280 chainNetNeoSch1,307 chainNetNeoSch1,590 chainNetNeoSch1,640 chainNetNeoSch1Viewchain,3 chainNetNeoSch1Viewnet,3 netNeoSch1,2 netNeoSch1,6 netNeoSch1,70 netNeoSch1,103 netNeoSch1,157 netNeoSch1,277 netNeoSch1,304 netNeoSch1,587 netNeoSch1,637 months uniprot,1573 more augustusGene,35 chainNeoSch1,170 chainNeoSch1,230 chainNetNeoSch1,173 chainNetNeoSch1,233 chainNetRn6,165 chainNetRn6,225 chainRn6,162 chainRn6,222 cpgIslandExt,541 cpgIslandExtUnmasked,544 cpgIslandSuper,541 ensGene,18 ensGene,158 est,65 est,172 est,279 est,409 est,433 genscan,50 genscan,125 genscan,163 intronEst,253 intronEst,360 intronEst,490 intronEst,514 microsat,96 mrna,46 mrna,118 mrna,225 mrna,346 mrna,372 nestedRepeats,211 nestedRepeats,300 netNeoSch1,170 netNeoSch1,230 netRn6,162 netRn6,222 refGene,64 refGene,208 rmsk,323 simpleRepeat,57 transMapEnsemblV5,130 transMapEnsemblV5,147 transMapEnsemblV5,222 transMapEnsemblV5,267 transMapEnsemblV5,289 transMapEnsemblV5,565 transMapEstV5,99 transMapEstV5,116 transMapEstV5,191 transMapEstV5,236 transMapEstV5,258 transMapEstV5,534 transMapRefSeqV5,99 transMapRefSeqV5,116 transMapRefSeqV5,191 transMapRefSeqV5,236 transMapRefSeqV5,258 transMapRefSeqV5,534 transMapRnaV5,99 transMapRnaV5,116 transMapRnaV5,191 transMapRnaV5,236 transMapRnaV5,258 transMapRnaV5,534 transMapV5,62 transMapV5,106 transMapV5,163 transMapV5,205 transMapV5,222 transMapV5,297 transMapV5,342 transMapV5,364 transMapV5,640 uniprot,498 uniprot,691 uniprot,984 uniprot,1841 xenoRefGene,174 morgulis windowmaskerSdust,90 most augustusGene,93 augustusGene,110 est,481 intronEst,562 nestedRepeats,249 transMapV5,92 uniprot,683 uniprot,756 uniprot,1295 uniprot,1391 mostly uniprot,1365 motifs uniprot,388 mouse chainNeoSch1,1077 chainNetNeoSch1,1080 chainNetRn6,1065 chainRn6,1062 netNeoSch1,1077 netRn6,1062 transMapEnsemblV5,44 transMapEnsemblV5,364 transMapEstV5,333 transMapRefSeqV5,333 transMapRnaV5,333 transMapV5,439 uniprot,521 uniprot,535 mrna est,7 est,504 est,520 est,603 intronEst,9 intronEst,585 intronEst,601 intronEst,684 mrna,7 mrna,12 mrna,126 mrna,399 mrna,439 mrna,446 transMapEnsemblV5,455 transMapEstV5,424 transMapRefSeqV5,424 transMapRnaV5,18 transMapRnaV5,424 transMapV5,99 transMapV5,530 mrnas mrna,2 mrna,4 mrna,18 mrna,136 mrna,241 mrna,256 mrna,297 mrna,315 mrna,340 mrna,386 transMapEnsemblV5,172 transMapEstV5,141 transMapRefSeqV5,141 transMapRnaV5,141 transMapV5,110 transMapV5,247 much chainNeoSch1,895 chainNeoSch1,912 chainNetNeoSch1,898 chainNetNeoSch1,915 chainNetRn6,883 chainNetRn6,900 chainRn6,880 chainRn6,897 nestedRepeats,210 netNeoSch1,895 netNeoSch1,912 netRn6,880 netRn6,897 mujica uniprot,1967 multiple chainNeoSch1,202 chainNetNeoSch1,205 chainNetRn6,197 chainRn6,194 est,257 est,686 intronEst,338 intronEst,767 mrna,203 mrna,402 netNeoSch1,202 netRn6,194 refGene,276 transMapEnsemblV5,498 transMapEstV5,467 transMapRefSeqV5,467 transMapRnaV5,467 transMapV5,573 uniprot,58 uniprot,1067 uniprot,1095 xenoRefGene,242 must intronEst,61 intronEst,78 mutagenesis uniprot,353 mutat uniprot,2044 mutated uniprot,618 mutation chainNeoSch1,191 chainNetNeoSch1,194 chainNetRn6,186 chainRn6,183 netNeoSch1,191 netRn6,183 mutation-related uniprot,408 mutations unipMut,1 unipMut,5 uniprot,352 mysql cpgIslandExt,538 cpgIslandExtUnmasked,541 cpgIslandSuper,538 ensGene,115 ensGene,125 n cpgIslandExt,386 cpgIslandExt,394 cpgIslandExt,456 cpgIslandExtUnmasked,389 cpgIslandExtUnmasked,397 cpgIslandExtUnmasked,459 cpgIslandSuper,386 cpgIslandSuper,394 cpgIslandSuper,456 name chainNeoSch1,377 chainNetNeoSch1,380 chainNetRn6,369 chainRn6,366 est,198 intronEst,279 mrna,144 nestedRepeats,136 netNeoSch1,377 netRn6,366 refGene,141 refGene,151 refGene,156 uniprot,105 uniprot,461 uniprot,541 uniprot,1577 xenoRefGene,107 xenoRefGene,117 xenoRefGene,122 names chainNeoSch1,252 chainNetNeoSch1,255 chainNetRn6,247 chainRn6,244 netNeoSch1,252 netRn6,244 refGene,163 ucscToINSDC,21 ucscToINSDC,24 xenoRefGene,129 native augustusGene,295 transMapEnsemblV5,763 transMapEstV5,732 transMapRefSeqV5,732 transMapRnaV5,732 transMapV5,122 transMapV5,838 natl chainNeoSch1,1082 chainNetNeoSch1,1085 chainNetRn6,1070 chainRn6,1067 netNeoSch1,1082 netRn6,1067 natural chainNeoSch1,833 chainNetNeoSch1,836 chainNetRn6,821 chainRn6,818 netNeoSch1,833 netRn6,818 nbci uniprot,822 nbsp chainNeoSch1,684 chainNetNeoSch1,687 chainNetRn6,672 chainRn6,669 netNeoSch1,684 netRn6,669 nc_000891.1 gold,159 ncbi gap,27 gap,30 gap,56 gold,29 gold,32 gold,55 refGene,24 refGene,330 refGene,400 ucscToINSDC,39 uniprot,840 uniprot,856 uniprot,1024 uniprot,1046 uniprot,1049 uniprot,1079 uniprot,1204 uniprot,1274 uniprot,1280 uniprot,1289 uniprot,1299 windowmaskerSdust,29 windowmaskerSdust,43 xenoRefGene,27 xenoRefGene,296 xenoRefGene,365 near cpgIslandExt,31 cpgIslandExtUnmasked,34 cpgIslandSuper,31 near-best transMapEnsemblV5,355 transMapEstV5,324 transMapRefSeqV5,324 transMapRnaV5,324 transMapV5,430 necessary chainNeoSch1,817 chainNetNeoSch1,820 chainNetRn6,805 chainRn6,802 netNeoSch1,817 netRn6,802 nematodes augustusGene,211 neosch1 chainNeoSch1,11 chainNeoSch1,75 chainNeoSch1,317 chainNetNeoSch1,12 chainNetNeoSch1,78 chainNetNeoSch1,320 chainNetNeoSch1Viewchain,8 chainNetNeoSch1Viewnet,8 netNeoSch1,11 netNeoSch1,75 netNeoSch1,317 net chainNeoSch1,38 chainNeoSch1,268 chainNeoSch1,271 chainNeoSch1,390 chainNeoSch1,771 chainNetNeoSch1,5 chainNetNeoSch1,15 chainNetNeoSch1,41 chainNetNeoSch1,271 chainNetNeoSch1,274 chainNetNeoSch1,393 chainNetNeoSch1,774 chainNetNeoSch1Viewchain,11 chainNetNeoSch1Viewnet,1 chainNetNeoSch1Viewnet,11 chainNetRn6,3 chainNetRn6,12 chainNetRn6,38 chainNetRn6,263 chainNetRn6,266 chainNetRn6,382 chainNetRn6,759 chainNetRn6Viewchain,10 chainNetRn6Viewnet,1 chainNetRn6Viewnet,10 chainRn6,35 chainRn6,260 chainRn6,263 chainRn6,379 chainRn6,756 netNeoSch1,4 netNeoSch1,13 netNeoSch1,38 netNeoSch1,268 netNeoSch1,271 netNeoSch1,390 netNeoSch1,771 netRn6,2 netRn6,10 netRn6,35 netRn6,260 netRn6,263 netRn6,379 netRn6,756 transMapV5,139 netclass chainNeoSch1,887 chainNeoSch1,1010 chainNetNeoSch1,890 chainNetNeoSch1,1013 chainNetRn6,875 chainNetRn6,998 chainRn6,872 chainRn6,995 netNeoSch1,887 netNeoSch1,1010 netRn6,872 netRn6,995 netfilter transMapEnsemblV5,252 transMapEstV5,221 transMapRefSeqV5,221 transMapRnaV5,221 transMapV5,327 nets chainNeoSch1,997 chainNetNeoSch1,1000 chainNetRn6,985 chainRn6,982 netNeoSch1,997 netRn6,982 transMapEnsemblV5,199 transMapEnsemblV5,241 transMapEnsemblV5,247 transMapEnsemblV5,261 transMapEstV5,168 transMapEstV5,210 transMapEstV5,216 transMapEstV5,230 transMapRefSeqV5,168 transMapRefSeqV5,210 transMapRefSeqV5,216 transMapRefSeqV5,230 transMapRnaV5,168 transMapRnaV5,210 transMapRnaV5,216 transMapRnaV5,230 transMapV5,88 transMapV5,274 transMapV5,316 transMapV5,322 transMapV5,336 netsyntenic chainNeoSch1,855 chainNeoSch1,1008 chainNetNeoSch1,858 chainNetNeoSch1,1011 chainNetRn6,843 chainNetRn6,996 chainRn6,840 chainRn6,993 netNeoSch1,855 netNeoSch1,1008 netRn6,840 netRn6,993 new augustusGene,329 newer est,555 intronEst,636 nestedRepeats,270 rmsk,106 newly cpgIslandExt,77 cpgIslandExtUnmasked,80 cpgIslandSuper,77 next chainNeoSch1,356 chainNeoSch1,385 chainNetNeoSch1,359 chainNetNeoSch1,388 chainNetRn6,348 chainNetRn6,377 chainRn6,345 chainRn6,374 netNeoSch1,356 netNeoSch1,385 netRn6,345 netRn6,374 nig augustusGene,270 no est,92 intronEst,173 microsat,73 transMapEnsemblV5,221 transMapEstV5,190 transMapRefSeqV5,190 transMapRnaV5,190 transMapV5,296 uniprot,1031 uniprot,1078 uniprot,1262 uniprot,1324 nomask cpgIslandExt,498 cpgIslandExtUnmasked,501 cpgIslandSuper,498 non-alignable chainNeoSch1,53 chainNetNeoSch1,56 chainNetRn6,53 chainRn6,50 netNeoSch1,53 netRn6,50 non-coding augustusGene,75 refGene,225 xenoRefGene,191 non-mrna est,624 intronEst,705 non-platypus xenoRefGene,3 non-protein-coding refGene,19 refGene,233 xenoRefGene,17 xenoRefGene,199 non-redundant refGene,406 xenoRefGene,371 nonsyn chainNeoSch1,562 chainNetNeoSch1,565 chainNetRn6,554 chainRn6,551 netNeoSch1,562 netRn6,551 normally cpgIslandExt,42 cpgIslandExtUnmasked,45 cpgIslandSuper,42 not chainNeoSch1,822 chainNetNeoSch1,825 chainNetRn6,810 chainRn6,807 cpgIslandExt,131 cpgIslandExt,186 cpgIslandExtUnmasked,134 cpgIslandExtUnmasked,189 cpgIslandSuper,131 cpgIslandSuper,186 est,349 est,484 est,511 est,525 intronEst,430 intronEst,565 intronEst,592 intronEst,606 mrna,295 netNeoSch1,822 netRn6,807 rmsk,113 rmsk,313 transMapEnsemblV5,62 uniprot,169 uniprot,627 uniprot,959 uniprot,1130 uniprot,1455 note est,654 intronEst,735 nestedRepeats,264 transMapEnsemblV5,496 transMapEstV5,465 transMapRefSeqV5,465 transMapRnaV5,465 transMapV5,571 uniprot,695 novel transMapEnsemblV5,737 transMapEstV5,706 transMapRefSeqV5,706 transMapRnaV5,706 transMapV5,812 novo augustusGene,304 transMapEnsemblV5,772 transMapEstV5,741 transMapRefSeqV5,741 transMapRnaV5,741 transMapV5,847 now uniprot,1680 ns chainNeoSch1,902 chainNetNeoSch1,905 chainNetRn6,890 chainRn6,887 netNeoSch1,902 netRn6,887 nuclear rmsk,155 rmsk,163 nucleic ensGene,195 est,758 est,783 intronEst,842 intronEst,867 microsat,125 mrna,475 mrna,500 refGene,381 refGene,414 simpleRepeat,85 uniprot,1997 xenoRefGene,346 xenoRefGene,379 nucleotide cpgIslandExt,352 cpgIslandExtUnmasked,355 cpgIslandSuper,352 ucscToINSDC,6 ucscToINSDC,28 number augustusGene,153 cpgIslandExt,279 cpgIslandExt,286 cpgIslandExt,292 cpgIslandExt,337 cpgIslandExt,383 cpgIslandExt,387 cpgIslandExt,390 cpgIslandExtUnmasked,282 cpgIslandExtUnmasked,289 cpgIslandExtUnmasked,295 cpgIslandExtUnmasked,340 cpgIslandExtUnmasked,386 cpgIslandExtUnmasked,390 cpgIslandExtUnmasked,393 cpgIslandSuper,279 cpgIslandSuper,286 cpgIslandSuper,292 cpgIslandSuper,337 cpgIslandSuper,383 cpgIslandSuper,387 cpgIslandSuper,390 intronEst,150 rmsk,233 transMapEnsemblV5,424 transMapEnsemblV5,547 transMapEstV5,393 transMapEstV5,516 transMapRefSeqV5,393 transMapRefSeqV5,516 transMapRnaV5,393 transMapRnaV5,516 transMapV5,499 transMapV5,622 o refGene,363 xenoRefGene,328 obs cpgIslandExt,380 cpgIslandExtUnmasked,383 cpgIslandSuper,380 observed cpgIslandExt,278 cpgIslandExt,364 cpgIslandExtUnmasked,281 cpgIslandExtUnmasked,367 cpgIslandSuper,278 cpgIslandSuper,364 uniprot,1114 obtain transMapEnsemblV5,649 transMapEstV5,618 transMapRefSeqV5,618 transMapRnaV5,618 transMapV5,724 uniprot,1803 obtained augustusGene,126 cpgIslandExt,562 cpgIslandExt,573 cpgIslandExtUnmasked,565 cpgIslandExtUnmasked,576 cpgIslandSuper,562 cpgIslandSuper,573 transMapEnsemblV5,156 transMapEnsemblV5,609 transMapEstV5,125 transMapEstV5,578 transMapRefSeqV5,125 transMapRefSeqV5,578 transMapRnaV5,125 transMapRnaV5,578 transMapV5,231 transMapV5,684 uniprot,1506 uniprot,1695 occur simpleRepeat,36 oct augustusGene,334 of augustusGene,72 augustusGene,84 augustusGene,92 augustusGene,94 augustusGene,154 augustusGene,195 augustusGene,236 chainNeoSch1,21 chainNeoSch1,68 chainNeoSch1,189 chainNeoSch1,209 chainNeoSch1,261 chainNeoSch1,284 chainNeoSch1,368 chainNeoSch1,378 chainNeoSch1,496 chainNeoSch1,516 chainNeoSch1,653 chainNeoSch1,658 chainNeoSch1,676 chainNeoSch1,696 chainNeoSch1,896 chainNeoSch1,971 chainNeoSch1,993 chainNeoSch1,1017 chainNeoSch1,1031 chainNetNeoSch1,24 chainNetNeoSch1,71 chainNetNeoSch1,192 chainNetNeoSch1,212 chainNetNeoSch1,264 chainNetNeoSch1,287 chainNetNeoSch1,371 chainNetNeoSch1,381 chainNetNeoSch1,499 chainNetNeoSch1,519 chainNetNeoSch1,656 chainNetNeoSch1,661 chainNetNeoSch1,679 chainNetNeoSch1,699 chainNetNeoSch1,899 chainNetNeoSch1,974 chainNetNeoSch1,996 chainNetNeoSch1,1020 chainNetNeoSch1,1034 chainNetRn6,21 chainNetRn6,68 chainNetRn6,184 chainNetRn6,204 chainNetRn6,256 chainNetRn6,277 chainNetRn6,360 chainNetRn6,370 chainNetRn6,488 chainNetRn6,508 chainNetRn6,641 chainNetRn6,646 chainNetRn6,664 chainNetRn6,684 chainNetRn6,884 chainNetRn6,959 chainNetRn6,981 chainNetRn6,1005 chainNetRn6,1019 chainRn6,18 chainRn6,65 chainRn6,181 chainRn6,201 chainRn6,253 chainRn6,274 chainRn6,357 chainRn6,367 chainRn6,485 chainRn6,505 chainRn6,638 chainRn6,643 chainRn6,661 chainRn6,681 chainRn6,881 chainRn6,956 chainRn6,978 chainRn6,1002 chainRn6,1016 cpgIslandExt,91 cpgIslandExt,108 cpgIslandExt,144 cpgIslandExt,171 cpgIslandExt,200 cpgIslandExt,221 cpgIslandExt,264 cpgIslandExt,277 cpgIslandExt,280 cpgIslandExt,290 cpgIslandExt,293 cpgIslandExt,312 cpgIslandExt,338 cpgIslandExt,350 cpgIslandExt,363 cpgIslandExt,384 cpgIslandExt,388 cpgIslandExt,391 cpgIslandExt,396 cpgIslandExt,400 cpgIslandExt,592 cpgIslandExtUnmasked,94 cpgIslandExtUnmasked,111 cpgIslandExtUnmasked,147 cpgIslandExtUnmasked,174 cpgIslandExtUnmasked,203 cpgIslandExtUnmasked,224 cpgIslandExtUnmasked,267 cpgIslandExtUnmasked,280 cpgIslandExtUnmasked,283 cpgIslandExtUnmasked,293 cpgIslandExtUnmasked,296 cpgIslandExtUnmasked,315 cpgIslandExtUnmasked,341 cpgIslandExtUnmasked,353 cpgIslandExtUnmasked,366 cpgIslandExtUnmasked,387 cpgIslandExtUnmasked,391 cpgIslandExtUnmasked,394 cpgIslandExtUnmasked,399 cpgIslandExtUnmasked,403 cpgIslandExtUnmasked,595 cpgIslandSuper,91 cpgIslandSuper,108 cpgIslandSuper,144 cpgIslandSuper,171 cpgIslandSuper,200 cpgIslandSuper,221 cpgIslandSuper,264 cpgIslandSuper,277 cpgIslandSuper,280 cpgIslandSuper,290 cpgIslandSuper,293 cpgIslandSuper,312 cpgIslandSuper,338 cpgIslandSuper,350 cpgIslandSuper,363 cpgIslandSuper,384 cpgIslandSuper,388 cpgIslandSuper,391 cpgIslandSuper,396 cpgIslandSuper,400 cpgIslandSuper,592 ensGene,33 ensGene,134 est,40 est,70 est,79 est,97 est,99 est,134 est,173 est,199 est,210 est,246 est,315 est,425 est,502 est,518 est,536 est,553 est,615 est,623 est,627 est,706 gap,40 gap,63 gap,82 gap,88 gap,122 gc5BaseBw,19 gc5BaseBw,46 gc5BaseBw,52 gc5BaseBw,67 gc5BaseBw,76 genscan,43 genscan,110 genscan,134 genscan,212 gold,42 gold,62 gold,88 gold,113 gold,143 intronEst,31 intronEst,52 intronEst,64 intronEst,96 intronEst,108 intronEst,117 intronEst,151 intronEst,160 intronEst,178 intronEst,180 intronEst,215 intronEst,254 intronEst,280 intronEst,291 intronEst,327 intronEst,396 intronEst,506 intronEst,583 intronEst,599 intronEst,617 intronEst,634 intronEst,696 intronEst,704 intronEst,708 intronEst,787 microsat,27 microsat,55 microsat,64 microsat,81 mrna,51 mrna,80 mrna,119 mrna,145 mrna,156 mrna,192 mrna,261 mrna,364 mrna,422 nestedRepeats,4 nestedRepeats,20 nestedRepeats,27 nestedRepeats,48 nestedRepeats,83 nestedRepeats,93 nestedRepeats,108 nestedRepeats,189 nestedRepeats,195 nestedRepeats,203 nestedRepeats,228 nestedRepeats,252 nestedRepeats,350 nestedRepeats,365 nestedRepeats,378 nestedRepeats,399 netNeoSch1,21 netNeoSch1,68 netNeoSch1,189 netNeoSch1,209 netNeoSch1,261 netNeoSch1,284 netNeoSch1,368 netNeoSch1,378 netNeoSch1,496 netNeoSch1,516 netNeoSch1,653 netNeoSch1,658 netNeoSch1,676 netNeoSch1,696 netNeoSch1,896 netNeoSch1,971 netNeoSch1,993 netNeoSch1,1017 netNeoSch1,1031 netRn6,18 netRn6,65 netRn6,181 netRn6,201 netRn6,253 netRn6,274 netRn6,357 netRn6,367 netRn6,485 netRn6,505 netRn6,638 netRn6,643 netRn6,661 netRn6,681 netRn6,881 netRn6,956 netRn6,978 netRn6,1002 netRn6,1016 refGene,95 refGene,114 refGene,128 refGene,153 refGene,264 refGene,296 refGene,409 rmsk,39 rmsk,59 rmsk,84 rmsk,151 rmsk,206 rmsk,216 rmsk,234 rmsk,246 rmsk,264 rmsk,373 rmsk,388 rmsk,401 rmsk,422 simpleRepeat,40 transMapEnsemblV5,85 transMapEnsemblV5,139 transMapEnsemblV5,168 transMapEnsemblV5,207 transMapEnsemblV5,273 transMapEnsemblV5,280 transMapEnsemblV5,296 transMapEnsemblV5,308 transMapEnsemblV5,321 transMapEnsemblV5,338 transMapEnsemblV5,357 transMapEnsemblV5,375 transMapEnsemblV5,454 transMapEnsemblV5,505 transMapEnsemblV5,548 transMapEnsemblV5,736 transMapEnsemblV5,801 transMapEstV5,54 transMapEstV5,108 transMapEstV5,137 transMapEstV5,176 transMapEstV5,242 transMapEstV5,249 transMapEstV5,265 transMapEstV5,277 transMapEstV5,290 transMapEstV5,307 transMapEstV5,326 transMapEstV5,344 transMapEstV5,423 transMapEstV5,474 transMapEstV5,517 transMapEstV5,705 transMapEstV5,770 transMapRefSeqV5,54 transMapRefSeqV5,108 transMapRefSeqV5,137 transMapRefSeqV5,176 transMapRefSeqV5,242 transMapRefSeqV5,249 transMapRefSeqV5,265 transMapRefSeqV5,277 transMapRefSeqV5,290 transMapRefSeqV5,307 transMapRefSeqV5,326 transMapRefSeqV5,344 transMapRefSeqV5,423 transMapRefSeqV5,474 transMapRefSeqV5,517 transMapRefSeqV5,705 transMapRefSeqV5,770 transMapRnaV5,54 transMapRnaV5,108 transMapRnaV5,137 transMapRnaV5,176 transMapRnaV5,242 transMapRnaV5,249 transMapRnaV5,265 transMapRnaV5,277 transMapRnaV5,290 transMapRnaV5,307 transMapRnaV5,326 transMapRnaV5,344 transMapRnaV5,423 transMapRnaV5,474 transMapRnaV5,517 transMapRnaV5,705 transMapRnaV5,770 transMapV5,55 transMapV5,214 transMapV5,243 transMapV5,282 transMapV5,348 transMapV5,355 transMapV5,371 transMapV5,383 transMapV5,396 transMapV5,413 transMapV5,432 transMapV5,450 transMapV5,529 transMapV5,580 transMapV5,623 transMapV5,811 transMapV5,876 unipAliSwissprot,5 unipAliTrembl,5 unipInterest,4 uniprot,83 uniprot,269 uniprot,298 uniprot,310 uniprot,385 uniprot,407 uniprot,420 uniprot,452 uniprot,465 uniprot,542 uniprot,561 uniprot,652 uniprot,677 uniprot,877 uniprot,902 uniprot,980 uniprot,1111 uniprot,1125 uniprot,1159 uniprot,1166 uniprot,1181 uniprot,1288 uniprot,1298 uniprot,1306 uniprot,1315 uniprot,1347 uniprot,1360 uniprot,1363 uniprot,1397 uniprot,1436 uniprot,1457 uniprot,1590 uniprot,1594 uniprot,1639 uniprot,1646 uniprot,1656 uniprot,1666 uniprot,1684 uniprot,1687 uniprot,1710 uniprot,1951 xenoRefGene,61 xenoRefGene,80 xenoRefGene,94 xenoRefGene,119 xenoRefGene,230 xenoRefGene,262 xenoRefGene,374 off chainNeoSch1,347 chainNeoSch1,353 chainNetNeoSch1,350 chainNetNeoSch1,356 chainNetRn6,339 chainNetRn6,345 chainRn6,336 chainRn6,342 netNeoSch1,347 netNeoSch1,353 netRn6,336 netRn6,342 refGene,166 xenoRefGene,132 offers genscan,79 often chainNeoSch1,219 chainNeoSch1,231 chainNetNeoSch1,222 chainNetNeoSch1,234 chainNetRn6,214 chainNetRn6,226 chainRn6,211 chainRn6,223 netNeoSch1,219 netNeoSch1,231 netRn6,211 netRn6,223 older uniprot,1560 uniprot,1647 oligo-dt est,495 intronEst,576 omitted nestedRepeats,165 on augustusGene,29 augustusGene,37 augustusGene,151 chainNeoSch1,335 chainNeoSch1,361 chainNeoSch1,464 chainNeoSch1,478 chainNeoSch1,528 chainNeoSch1,533 chainNeoSch1,548 chainNeoSch1,783 chainNetNeoSch1,338 chainNetNeoSch1,364 chainNetNeoSch1,467 chainNetNeoSch1,481 chainNetNeoSch1,531 chainNetNeoSch1,536 chainNetNeoSch1,551 chainNetNeoSch1,786 chainNetRn6,327 chainNetRn6,353 chainNetRn6,456 chainNetRn6,470 chainNetRn6,520 chainNetRn6,525 chainNetRn6,540 chainNetRn6,771 chainRn6,324 chainRn6,350 chainRn6,453 chainRn6,467 chainRn6,517 chainRn6,522 chainRn6,537 chainRn6,768 cpgIslandExt,287 cpgIslandExt,323 cpgIslandExt,544 cpgIslandExt,551 cpgIslandExtUnmasked,5 cpgIslandExtUnmasked,290 cpgIslandExtUnmasked,326 cpgIslandExtUnmasked,547 cpgIslandExtUnmasked,554 cpgIslandSuper,287 cpgIslandSuper,323 cpgIslandSuper,544 cpgIslandSuper,551 ensGene,20 ensGene,118 ensGene,123 ensGene,129 ensGene,140 est,229 est,278 gap,85 genscan,27 genscan,52 intronEst,310 intronEst,359 mrna,175 mrna,224 nestedRepeats,141 nestedRepeats,176 nestedRepeats,277 netNeoSch1,335 netNeoSch1,361 netNeoSch1,464 netNeoSch1,478 netNeoSch1,528 netNeoSch1,533 netNeoSch1,548 netNeoSch1,783 netRn6,324 netRn6,350 netRn6,453 netRn6,467 netRn6,517 netRn6,522 netRn6,537 netRn6,768 refGene,66 refGene,377 rmsk,74 transMapEnsemblV5,567 transMapEnsemblV5,804 transMapEstV5,536 transMapEstV5,773 transMapRefSeqV5,536 transMapRefSeqV5,773 transMapRnaV5,536 transMapRnaV5,773 transMapV5,102 transMapV5,642 transMapV5,879 uniprot,19 uniprot,61 uniprot,129 uniprot,172 uniprot,232 uniprot,443 uniprot,482 uniprot,648 uniprot,728 uniprot,772 uniprot,809 uniprot,859 uniprot,1035 uniprot,1139 uniprot,1176 uniprot,1366 uniprot,1446 uniprot,1534 uniprot,1558 uniprot,1567 uniprot,1581 uniprot,1605 uniprot,1887 uniprot,2039 xenoRefGene,342 once est,263 intronEst,344 mrna,209 uniprot,647 one augustusGene,169 chainNeoSch1,197 chainNeoSch1,369 chainNeoSch1,515 chainNeoSch1,810 chainNeoSch1,906 chainNetNeoSch1,200 chainNetNeoSch1,372 chainNetNeoSch1,518 chainNetNeoSch1,813 chainNetNeoSch1,909 chainNetRn6,192 chainNetRn6,361 chainNetRn6,507 chainNetRn6,798 chainNetRn6,894 chainRn6,189 chainRn6,358 chainRn6,504 chainRn6,795 chainRn6,891 cpgIslandExt,233 cpgIslandExtUnmasked,236 cpgIslandSuper,233 est,170 est,281 est,314 gold,155 intronEst,67 intronEst,251 intronEst,362 intronEst,395 mrna,116 mrna,227 mrna,260 netNeoSch1,197 netNeoSch1,369 netNeoSch1,515 netNeoSch1,810 netNeoSch1,906 netRn6,189 netRn6,358 netRn6,504 netRn6,795 netRn6,891 transMapV5,77 uniprot,74 uniprot,77 uniprot,155 uniprot,981 uniprot,1098 uniprot,1638 ones transMapEnsemblV5,50 uniprot,1041 ongoing uniprot,1569 only chainNeoSch1,365 chainNetNeoSch1,368 chainNetRn6,357 chainRn6,354 cpgIslandExt,196 cpgIslandExtUnmasked,199 cpgIslandSuper,196 est,154 est,294 est,367 est,400 est,697 intronEst,235 intronEst,375 intronEst,448 intronEst,481 intronEst,778 microsat,61 mrna,100 mrna,240 mrna,313 mrna,413 netNeoSch1,365 netRn6,354 refGene,242 refGene,287 transMapEnsemblV5,49 transMapEnsemblV5,650 transMapEstV5,619 transMapRefSeqV5,619 transMapRnaV5,619 transMapV5,725 uniprot,645 uniprot,975 uniprot,1178 uniprot,1302 uniprot,1804 xenoRefGene,208 xenoRefGene,253 oommen transMapEnsemblV5,728 transMapEstV5,697 transMapRefSeqV5,697 transMapRnaV5,697 transMapV5,803 open-3.0 nestedRepeats,331 rmsk,354 opin nestedRepeats,385 nestedRepeats,407 rmsk,408 rmsk,430 opposite chainNeoSch1,560 chainNetNeoSch1,563 chainNetRn6,552 chainRn6,549 netNeoSch1,560 netRn6,549 option augustusGene,167 augustusGene,187 est,413 genscan,94 intronEst,494 mrna,350 refGene,146 refGene,198 transMapEnsemblV5,134 transMapEstV5,103 transMapRefSeqV5,103 transMapRnaV5,103 transMapV5,209 xenoRefGene,112 xenoRefGene,164 optional refGene,176 xenoRefGene,142 options est,442 gc5BaseBw,70 genscan,85 intronEst,523 mrna,381 or chainNeoSch1,34 chainNeoSch1,135 chainNeoSch1,160 chainNeoSch1,192 chainNeoSch1,499 chainNeoSch1,878 chainNeoSch1,907 chainNetNeoSch1,37 chainNetNeoSch1,138 chainNetNeoSch1,163 chainNetNeoSch1,195 chainNetNeoSch1,502 chainNetNeoSch1,881 chainNetNeoSch1,910 chainNetRn6,34 chainNetRn6,132 chainNetRn6,155 chainNetRn6,187 chainNetRn6,491 chainNetRn6,866 chainNetRn6,895 chainRn6,31 chainRn6,129 chainRn6,152 chainRn6,184 chainRn6,488 chainRn6,863 chainRn6,892 cpgIslandExt,127 cpgIslandExt,266 cpgIslandExt,523 cpgIslandExtUnmasked,130 cpgIslandExtUnmasked,269 cpgIslandExtUnmasked,526 cpgIslandSuper,127 cpgIslandSuper,266 cpgIslandSuper,523 ensGene,68 ensGene,89 ensGene,110 est,171 est,306 est,325 est,334 est,399 est,477 est,509 est,523 intronEst,252 intronEst,387 intronEst,406 intronEst,415 intronEst,480 intronEst,558 intronEst,590 intronEst,604 mrna,117 mrna,252 mrna,271 mrna,280 nestedRepeats,96 nestedRepeats,117 nestedRepeats,158 netNeoSch1,34 netNeoSch1,135 netNeoSch1,160 netNeoSch1,192 netNeoSch1,499 netNeoSch1,878 netNeoSch1,907 netRn6,31 netRn6,129 netRn6,152 netRn6,184 netRn6,488 netRn6,863 netRn6,892 refGene,56 refGene,164 rmsk,251 rmsk,280 transMapEnsemblV5,19 transMapEnsemblV5,531 transMapEnsemblV5,559 transMapEnsemblV5,602 transMapEnsemblV5,622 transMapEstV5,500 transMapEstV5,528 transMapEstV5,571 transMapEstV5,591 transMapRefSeqV5,500 transMapRefSeqV5,528 transMapRefSeqV5,571 transMapRefSeqV5,591 transMapRnaV5,500 transMapRnaV5,528 transMapRnaV5,571 transMapRnaV5,591 transMapV5,47 transMapV5,606 transMapV5,634 transMapV5,677 transMapV5,697 uniprot,317 uniprot,389 uniprot,436 uniprot,829 uniprot,888 uniprot,982 uniprot,1038 uniprot,1205 uniprot,1266 uniprot,1401 uniprot,1449 uniprot,1722 uniprot,1776 uniprot,1835 uniprot,1879 xenoRefGene,130 order gap,79 gold,110 uniprot,872 organ est,195 est,201 intronEst,276 intronEst,282 mrna,141 mrna,147 organism chainNeoSch1,344 chainNeoSch1,374 chainNetNeoSch1,347 chainNetNeoSch1,377 chainNetRn6,336 chainNetRn6,366 chainRn6,333 chainRn6,363 netNeoSch1,344 netNeoSch1,374 netRn6,333 netRn6,363 organisms chainNeoSch1,923 chainNetNeoSch1,926 chainNetRn6,911 chainRn6,908 nestedRepeats,295 netNeoSch1,923 netRn6,908 rmsk,302 transMapEnsemblV5,159 transMapEnsemblV5,216 transMapEstV5,128 transMapEstV5,185 transMapRefSeqV5,128 transMapRefSeqV5,185 transMapRnaV5,128 transMapRnaV5,185 transMapV5,64 transMapV5,152 transMapV5,234 transMapV5,291 uniprot,998 xenoRefGene,20 organizes chainNeoSch1,630 chainNetNeoSch1,633 chainNetRn6,620 chainRn6,617 netNeoSch1,630 netRn6,617 orientation chainNeoSch1,561 chainNetNeoSch1,564 chainNetRn6,553 chainRn6,550 cytoBandIdeo,6 gap,81 gold,112 netNeoSch1,561 netRn6,550 origin nestedRepeats,398 rmsk,421 original nestedRepeats,84 ornana2 ensGene,80 transMapEnsemblV5,203 transMapEnsemblV5,662 transMapEstV5,172 transMapEstV5,631 transMapRefSeqV5,172 transMapRefSeqV5,631 transMapRnaV5,172 transMapRnaV5,631 transMapV5,278 transMapV5,737 uniprot,1816 ornana2.ensembl.transmapv4.bigpsl transMapEnsemblV5,590 transMapEstV5,559 transMapRefSeqV5,559 transMapRnaV5,559 ornana2.ensembl.transmapv5.bigpsl transMapV5,665 ornana2.est.transmapv4.bigpsl transMapEnsemblV5,599 transMapEstV5,568 transMapRefSeqV5,568 transMapRnaV5,568 ornana2.est.transmapv5.bigpsl transMapV5,674 ornana2.fa windowmaskerSdust,62 windowmaskerSdust,71 ornana2.refseq.transmapv4.bigpsl transMapEnsemblV5,593 transMapEnsemblV5,665 transMapEstV5,562 transMapEstV5,634 transMapRefSeqV5,562 transMapRefSeqV5,634 transMapRnaV5,562 transMapRnaV5,634 ornana2.refseq.transmapv5.bigpsl transMapV5,668 transMapV5,740 ornana2.rna.transmapv4.bigpsl transMapEnsemblV5,596 transMapEstV5,565 transMapRefSeqV5,565 transMapRnaV5,565 ornana2.rna.transmapv5.bigpsl transMapV5,671 orthologous transMapEnsemblV5,87 transMapEstV5,56 transMapRefSeqV5,56 transMapRnaV5,56 transMapV5,57 orthologs chainNeoSch1,296 chainNetNeoSch1,299 chainNetRn6,289 chainRn6,286 netNeoSch1,296 netRn6,286 transMapV5,94 ostell est,753 est,777 intronEst,837 intronEst,861 mrna,470 mrna,494 other augustusGene,208 chainNeoSch1,28 chainNeoSch1,426 chainNeoSch1,519 chainNetNeoSch1,31 chainNetNeoSch1,429 chainNetNeoSch1,522 chainNetRn6,28 chainNetRn6,418 chainNetRn6,511 chainRn6,25 chainRn6,415 chainRn6,508 cpgIslandExt,135 cpgIslandExtUnmasked,138 cpgIslandSuper,135 nestedRepeats,376 netNeoSch1,28 netNeoSch1,426 netNeoSch1,519 netRn6,25 netRn6,415 netRn6,508 rmsk,195 rmsk,399 transMapEnsemblV5,30 transMapEnsemblV5,46 transMapEnsemblV5,368 transMapEstV5,28 transMapEstV5,337 transMapRefSeqV5,28 transMapRefSeqV5,337 transMapRnaV5,28 transMapRnaV5,337 transMapV5,27 transMapV5,443 unipOther,1 unipOther,4 uniprot,90 uniprot,122 uniprot,205 uniprot,319 uniprot,393 uniprot,396 uniprot,862 uniprot,1200 xenoRefGene,1 xenoRefGene,21 others cpgIslandExt,247 cpgIslandExtUnmasked,250 cpgIslandSuper,247 nestedRepeats,214 uniprot,1312 uniprot,1344 otherwise cpgIslandExt,185 cpgIslandExtUnmasked,188 cpgIslandSuper,185 est,678 intronEst,759 transMapEnsemblV5,246 transMapEstV5,215 transMapRefSeqV5,215 transMapRnaV5,215 transMapV5,321 ouml augustusGene,269 our augustusGene,43 cpgIslandExt,536 cpgIslandExt,545 cpgIslandExt,552 cpgIslandExtUnmasked,539 cpgIslandExtUnmasked,548 cpgIslandExtUnmasked,555 cpgIslandSuper,536 cpgIslandSuper,545 cpgIslandSuper,552 ensGene,26 ensGene,84 ensGene,91 ensGene,113 ensGene,124 ensGene,130 ensGene,141 genscan,58 refGene,72 rmsk,124 rmsk,129 transMapEnsemblV5,556 transMapEnsemblV5,562 transMapEnsemblV5,572 transMapEnsemblV5,611 transMapEstV5,525 transMapEstV5,531 transMapEstV5,541 transMapEstV5,580 transMapRefSeqV5,525 transMapRefSeqV5,531 transMapRefSeqV5,541 transMapRefSeqV5,580 transMapRnaV5,525 transMapRnaV5,531 transMapRnaV5,541 transMapRnaV5,580 transMapV5,631 transMapV5,637 transMapV5,647 transMapV5,686 uniprot,891 uniprot,1697 uniprot,1765 uniprot,1829 uniprot,1836 uniprot,1870 uniprot,1874 out chainNeoSch1,652 chainNetNeoSch1,655 chainNetRn6,640 chainRn6,637 netNeoSch1,652 netRn6,637 output cpgIslandExt,499 cpgIslandExtUnmasked,502 cpgIslandSuper,499 nestedRepeats,26 nestedRepeats,110 windowmaskerSdust,63 windowmaskerSdust,72 outputs rmsk,35 outside est,614 intronEst,695 uniprot,558 over chainNeoSch1,205 chainNeoSch1,667 chainNetNeoSch1,208 chainNetNeoSch1,670 chainNetRn6,200 chainNetRn6,655 chainRn6,197 chainRn6,652 cpgIslandExt,97 cpgIslandExtUnmasked,100 cpgIslandSuper,97 netNeoSch1,205 netNeoSch1,667 netRn6,197 netRn6,652 uniprot,522 uniprot,536 overlapping chainNeoSch1,120 chainNeoSch1,185 chainNetNeoSch1,123 chainNetNeoSch1,188 chainNetRn6,117 chainNetRn6,180 chainRn6,114 chainRn6,177 netNeoSch1,120 netNeoSch1,185 netRn6,114 netRn6,177 own uniprot,724 p genscan,205 nestedRepeats,329 rmsk,352 pac chainNeoSch1,1051 chainNetNeoSch1,1054 chainNetRn6,1039 chainRn6,1036 netNeoSch1,1051 netRn6,1036 pack chainNeoSch1,241 chainNetNeoSch1,244 chainNetRn6,236 chainRn6,233 nestedRepeats,116 netNeoSch1,241 netRn6,233 page cpgIslandExt,223 cpgIslandExt,547 cpgIslandExtUnmasked,226 cpgIslandExtUnmasked,550 cpgIslandSuper,223 cpgIslandSuper,547 ensGene,127 ensGene,166 est,110 est,422 est,443 genscan,78 genscan,123 intronEst,191 intronEst,503 intronEst,524 mrna,56 mrna,361 mrna,382 refGene,48 refGene,132 refGene,223 rmsk,77 uniprot,236 uniprot,651 uniprot,1158 uniprot,1585 uniprot,2027 xenoRefGene,98 xenoRefGene,189 pages chainNeoSch1,788 chainNetNeoSch1,791 chainNetRn6,776 chainRn6,773 netNeoSch1,788 netRn6,773 pair gap,95 pairwise chainNeoSch1,1029 chainNeoSch1,1047 chainNetNeoSch1,1032 chainNetNeoSch1,1050 chainNetRn6,1017 chainNetRn6,1035 chainRn6,1014 chainRn6,1032 netNeoSch1,1029 netNeoSch1,1047 netRn6,1014 netRn6,1032 transMapEnsemblV5,336 transMapEstV5,305 transMapRefSeqV5,305 transMapRnaV5,305 transMapV5,83 transMapV5,411 paralogous transMapEnsemblV5,300 transMapEstV5,269 transMapRefSeqV5,269 transMapRnaV5,269 transMapV5,375 paralogs chainNeoSch1,234 chainNetNeoSch1,237 chainNetRn6,229 chainRn6,226 netNeoSch1,234 netRn6,226 transMapV5,160 parameters windowmaskerSdust,57 parent cpgIslandExt,83 cpgIslandExtUnmasked,86 cpgIslandSuper,83 parentheses gold,147 part chainNeoSch1,283 chainNetNeoSch1,286 chainNetRn6,276 chainRn6,273 netNeoSch1,283 netRn6,273 particular augustusGene,234 chainNeoSch1,207 chainNetNeoSch1,210 chainNetRn6,202 chainRn6,199 netNeoSch1,207 netRn6,199 uniprot,1019 particularly cpgIslandExt,21 cpgIslandExtUnmasked,24 cpgIslandSuper,21 parts chainNeoSch1,43 chainNeoSch1,54 chainNetNeoSch1,46 chainNetNeoSch1,57 chainNetRn6,43 chainNetRn6,54 chainRn6,40 chainRn6,51 netNeoSch1,43 netNeoSch1,54 netRn6,40 netRn6,51 past uniprot,1690 patch uniprot,1423 patches uniprot,1432 patterns augustusGene,56 pennsylvania chainNeoSch1,934 chainNeoSch1,1037 chainNetNeoSch1,937 chainNetNeoSch1,1040 chainNetRn6,922 chainNetRn6,1025 chainRn6,919 chainRn6,1022 netNeoSch1,934 netNeoSch1,1037 netRn6,919 netRn6,1022 peptide unipLocSignal,2 uniprot,477 uniprot,565 peptides unipLocSignal,5 uniprot,239 uniprot,512 percent gc5BaseBw,2 gc5BaseBw,4 gc5BaseBw,14 percentage cpgIslandExt,345 cpgIslandExtUnmasked,348 cpgIslandSuper,345 gc5BaseBw,18 perfect microsat,31 performed cpgIslandExt,405 cpgIslandExtUnmasked,408 cpgIslandSuper,405 perhaps cpgIslandExt,137 cpgIslandExtUnmasked,140 cpgIslandSuper,137 est,605 intronEst,686 period microsat,65 permitted rmsk,314 ph.d chainNeoSch1,1034 chainNetNeoSch1,1037 chainNetRn6,1022 chainRn6,1019 netNeoSch1,1034 netRn6,1019 pharmaceuticals uniprot,1969 phenotype uniprot,432 phosphorylation uniprot,590 phylofit transMapEnsemblV5,228 transMapEstV5,197 transMapRefSeqV5,197 transMapRnaV5,197 transMapV5,303 pia uniprot,1971 pick uniprot,1089 pipeline uniprot,1537 pipelines uniprot,1850 place chainNeoSch1,807 chainNetNeoSch1,810 chainNetRn6,795 chainRn6,792 netNeoSch1,807 netRn6,792 placed chainNeoSch1,849 chainNetNeoSch1,852 chainNetRn6,837 chainRn6,834 netNeoSch1,849 netRn6,834 places est,687 intronEst,768 mrna,403 refGene,277 xenoRefGene,243 plasmid est,466 intronEst,547 platypus chainNeoSch1,78 chainNeoSch1,106 chainNeoSch1,165 chainNeoSch1,211 chainNeoSch1,279 chainNeoSch1,286 chainNeoSch1,589 chainNeoSch1,643 chainNetNeoSch1,81 chainNetNeoSch1,109 chainNetNeoSch1,168 chainNetNeoSch1,214 chainNetNeoSch1,282 chainNetNeoSch1,289 chainNetNeoSch1,592 chainNetNeoSch1,646 chainNetRn6,77 chainNetRn6,103 chainNetRn6,160 chainNetRn6,206 chainNetRn6,272 chainNetRn6,279 chainNetRn6,579 chainNetRn6,631 chainRn6,74 chainRn6,100 chainRn6,157 chainRn6,203 chainRn6,269 chainRn6,276 chainRn6,576 chainRn6,628 est,1 est,3 est,16 est,643 gap,17 gold,19 intronEst,3 intronEst,18 intronEst,124 intronEst,724 mrna,1 mrna,3 mrna,17 mrna,385 netNeoSch1,78 netNeoSch1,106 netNeoSch1,165 netNeoSch1,211 netNeoSch1,279 netNeoSch1,286 netNeoSch1,589 netNeoSch1,643 netRn6,74 netRn6,100 netRn6,157 netRn6,203 netRn6,269 netRn6,276 netRn6,576 netRn6,628 refGene,16 refGene,256 transMapEnsemblV5,90 transMapEnsemblV5,202 transMapEnsemblV5,332 transMapEstV5,59 transMapEstV5,171 transMapEstV5,301 transMapRefSeqV5,59 transMapRefSeqV5,171 transMapRefSeqV5,301 transMapRnaV5,59 transMapRnaV5,171 transMapRnaV5,301 transMapV5,60 transMapV5,277 transMapV5,407 xenoRefGene,23 xenoRefGene,222 please ensGene,41 ensGene,160 refGene,38 uniprot,685 uniprot,1439 uniprot,1826 plos transMapEnsemblV5,808 transMapEstV5,777 transMapRefSeqV5,777 transMapRnaV5,777 transMapV5,883 pmc chainNeoSch1,1096 chainNeoSch1,1127 chainNetNeoSch1,1099 chainNetNeoSch1,1130 chainNetRn6,1084 chainNetRn6,1115 chainRn6,1081 chainRn6,1112 ensGene,206 est,769 est,795 est,813 intronEst,853 intronEst,879 intronEst,897 microsat,136 mrna,486 mrna,512 mrna,530 netNeoSch1,1096 netNeoSch1,1127 netRn6,1081 netRn6,1112 refGene,350 refGene,392 refGene,426 simpleRepeat,96 transMapEnsemblV5,752 transMapEnsemblV5,818 transMapEstV5,721 transMapEstV5,787 transMapRefSeqV5,721 transMapRefSeqV5,787 transMapRnaV5,721 transMapRnaV5,787 transMapV5,827 transMapV5,893 uniprot,2008 xenoRefGene,315 xenoRefGene,357 xenoRefGene,391 pmc148217 microsat,137 simpleRepeat,97 pmc187518 est,814 intronEst,898 mrna,531 refGene,351 xenoRefGene,316 pmc208784 chainNeoSch1,1097 chainNetNeoSch1,1100 chainNetRn6,1085 chainRn6,1082 netNeoSch1,1097 netRn6,1082 pmc2099585 transMapEnsemblV5,753 transMapEstV5,722 transMapRefSeqV5,722 transMapRnaV5,722 transMapV5,828 pmc2134963 transMapEnsemblV5,819 transMapEstV5,788 transMapRefSeqV5,788 transMapRnaV5,788 transMapV5,894 pmc308779 est,796 intronEst,880 mrna,513 pmc3245120 uniprot,2009 pmc3531190 est,770 intronEst,854 mrna,487 pmc3965018 refGene,393 xenoRefGene,358 pmc430961 chainNeoSch1,1128 chainNetNeoSch1,1131 chainNetRn6,1116 chainRn6,1113 netNeoSch1,1128 netRn6,1113 pmc539979 refGene,427 xenoRefGene,392 pmc99161 ensGene,207 pmid augustusGene,314 augustusGene,339 chainNeoSch1,1056 chainNeoSch1,1094 chainNeoSch1,1125 chainNetNeoSch1,1059 chainNetNeoSch1,1097 chainNetNeoSch1,1128 chainNetRn6,1044 chainNetRn6,1082 chainNetRn6,1113 chainRn6,1041 chainRn6,1079 chainRn6,1110 cpgIslandExt,622 cpgIslandExtUnmasked,625 cpgIslandSuper,622 ensGene,204 est,767 est,793 est,811 genscan,229 intronEst,851 intronEst,877 intronEst,895 microsat,134 mrna,484 mrna,510 mrna,528 nestedRepeats,360 nestedRepeats,393 nestedRepeats,415 netNeoSch1,1056 netNeoSch1,1094 netNeoSch1,1125 netRn6,1041 netRn6,1079 netRn6,1110 refGene,348 refGene,390 refGene,424 rmsk,383 rmsk,416 rmsk,438 simpleRepeat,94 transMapEnsemblV5,750 transMapEnsemblV5,782 transMapEnsemblV5,816 transMapEstV5,719 transMapEstV5,751 transMapEstV5,785 transMapRefSeqV5,719 transMapRefSeqV5,751 transMapRefSeqV5,785 transMapRnaV5,719 transMapRnaV5,751 transMapRnaV5,785 transMapV5,825 transMapV5,857 transMapV5,891 uniprot,2006 uniprot,2050 windowmaskerSdust,113 xenoRefGene,313 xenoRefGene,355 xenoRefGene,389 point est,548 intronEst,629 rmsk,269 poly-a augustusGene,62 est,500 est,574 intronEst,581 intronEst,655 polymorphic microsat,41 simpleRepeat,46 polypeptide unipChain,6 uniprot,287 uniprot,289 population microsat,44 position chainNeoSch1,723 chainNetNeoSch1,726 chainNetRn6,711 chainRn6,708 netNeoSch1,723 netRn6,708 uniprot,610 positions uniprot,1495 possible chainNeoSch1,420 chainNetNeoSch1,423 chainNetRn6,412 chainRn6,409 netNeoSch1,420 netRn6,409 uniprot,601 possibly chainNeoSch1,295 chainNetNeoSch1,298 chainNetRn6,288 chainRn6,285 netNeoSch1,295 netRn6,285 simpleRepeat,18 post-alignment transMapEnsemblV5,303 transMapEstV5,272 transMapRefSeqV5,272 transMapRnaV5,272 transMapV5,378 post-processing uniprot,295 potential cpgIslandExt,175 cpgIslandExtUnmasked,178 cpgIslandSuper,175 pre-mrna genscan,185 precompiled transMapEnsemblV5,626 transMapEstV5,595 transMapRefSeqV5,595 transMapRnaV5,595 transMapV5,701 uniprot,1780 predicted cpgIslandExt,228 cpgIslandExtUnmasked,231 cpgIslandSuper,228 refGene,102 uniprot,48 uniprot,193 xenoRefGene,68 prediction augustusGene,321 genscan,73 genscan,211 refGene,87 transMapEnsemblV5,84 transMapEstV5,53 transMapRefSeqV5,53 transMapRnaV5,53 transMapV5,54 xenoRefGene,53 predictions augustusGene,6 augustusGene,11 augustusGene,18 augustusGene,26 augustusGene,191 ensGene,8 ensGene,12 ensGene,40 genscan,5 genscan,9 genscan,14 genscan,24 genscan,112 genscan,118 refGene,8 refGene,189 refGene,218 transMapEnsemblV5,13 transMapEstV5,11 transMapRefSeqV5,12 transMapRnaV5,12 transMapV5,10 unipAliSwissprot,21 unipAliTrembl,13 unipChain,11 unipConflict,9 unipDisulfBond,9 unipDomain,7 unipInterest,9 unipLocCytopl,8 unipLocExtra,8 unipLocSignal,9 unipLocTransMemb,8 unipModif,10 unipMut,9 unipOther,9 unipRepeat,7 unipStruct,11 uniprot,10 xenoRefGene,9 xenoRefGene,155 xenoRefGene,184 prepared gc5BaseBw,80 ucscToINSDC,49 uniprot,712 present cpgIslandExt,154 cpgIslandExtUnmasked,157 cpgIslandSuper,154 rmsk,44 presentation gc5BaseBw,75 pressure cpgIslandExt,123 cpgIslandExtUnmasked,126 cpgIslandSuper,123 previous ensGene,132 uniprot,1654 previously chainNeoSch1,927 chainNetNeoSch1,930 chainNetRn6,915 chainRn6,912 netNeoSch1,927 netRn6,912 primary unipStruct,4 uniprot,360 primed est,492 intronEst,573 primer est,479 intronEst,560 priming est,575 intronEst,656 principal gap,120 pringle transMapEnsemblV5,792 transMapEstV5,761 transMapRefSeqV5,761 transMapRnaV5,761 transMapV5,867 printf cpgIslandExt,435 cpgIslandExtUnmasked,438 cpgIslandSuper,435 problem uniprot,1359 uniprot,1389 proc chainNeoSch1,1081 chainNetNeoSch1,1084 chainNetRn6,1069 chainRn6,1066 netNeoSch1,1081 netRn6,1066 procedure uniprot,990 procedures gap,22 gold,24 process chainNeoSch1,831 chainNetNeoSch1,834 chainNetRn6,819 chainRn6,816 netNeoSch1,831 netRn6,816 uniprot,321 uniprot,879 uniprot,905 uniprot,1229 uniprot,1448 processed chainNeoSch1,222 chainNetNeoSch1,225 chainNetRn6,217 chainRn6,214 netNeoSch1,222 netRn6,214 produced est,725 intronEst,809 mrna,442 refGene,315 transMapEnsemblV5,22 transMapEnsemblV5,677 transMapEnsemblV5,701 transMapEstV5,20 transMapEstV5,646 transMapEstV5,670 transMapRefSeqV5,20 transMapRefSeqV5,646 transMapRefSeqV5,670 transMapRnaV5,20 transMapRnaV5,646 transMapRnaV5,670 transMapV5,19 transMapV5,141 transMapV5,752 transMapV5,776 xenoRefGene,281 products unipChain,5 program augustusGene,21 augustusGene,257 chainNeoSch1,621 chainNeoSch1,663 chainNeoSch1,801 chainNeoSch1,854 chainNeoSch1,886 chainNeoSch1,962 chainNeoSch1,965 chainNetNeoSch1,624 chainNetNeoSch1,666 chainNetNeoSch1,804 chainNetNeoSch1,857 chainNetNeoSch1,889 chainNetNeoSch1,965 chainNetNeoSch1,968 chainNetRn6,611 chainNetRn6,651 chainNetRn6,789 chainNetRn6,842 chainNetRn6,874 chainNetRn6,950 chainNetRn6,953 chainRn6,608 chainRn6,648 chainRn6,786 chainRn6,839 chainRn6,871 chainRn6,947 chainRn6,950 cpgIslandExt,559 cpgIslandExt,569 cpgIslandExt,594 cpgIslandExtUnmasked,562 cpgIslandExtUnmasked,572 cpgIslandExtUnmasked,597 cpgIslandSuper,559 cpgIslandSuper,569 cpgIslandSuper,594 genscan,18 genscan,137 genscan,178 microsat,100 microsat,120 mrna,395 nestedRepeats,30 netNeoSch1,621 netNeoSch1,663 netNeoSch1,801 netNeoSch1,854 netNeoSch1,886 netNeoSch1,962 netNeoSch1,965 netRn6,608 netRn6,648 netRn6,786 netRn6,839 netRn6,871 netRn6,947 netRn6,950 rmsk,20 rmsk,34 simpleRepeat,62 simpleRepeat,80 transMapEnsemblV5,313 transMapEstV5,282 transMapRefSeqV5,282 transMapRnaV5,282 transMapV5,388 uniprot,1529 programmatic ensGene,99 programs chainNeoSch1,1011 chainNetNeoSch1,1014 chainNetRn6,999 chainRn6,996 netNeoSch1,1011 netRn6,996 uniprot,1877 project ensGene,194 refGene,332 xenoRefGene,298 projected uniprot,800 projection transMapEnsemblV5,57 transMapEnsemblV5,320 transMapEstV5,289 transMapRefSeqV5,289 transMapRnaV5,289 transMapV5,395 projects est,569 est,588 est,618 intronEst,650 intronEst,669 intronEst,699 transMapEnsemblV5,709 transMapEstV5,678 transMapRefSeqV5,678 transMapRnaV5,678 transMapV5,784 promoter cpgIslandExt,40 cpgIslandExtUnmasked,43 cpgIslandSuper,40 pronounced uniprot,1392 proofreading cpgIslandExt,93 cpgIslandExtUnmasked,96 cpgIslandSuper,93 prot.bed uniprot,1931 uniprot,1933 protein unipChain,4 unipStruct,3 uniprot,5 uniprot,15 uniprot,84 uniprot,95 uniprot,111 uniprot,113 uniprot,137 uniprot,153 uniprot,194 uniprot,196 uniprot,252 uniprot,256 uniprot,267 uniprot,278 uniprot,293 uniprot,324 uniprot,359 uniprot,635 uniprot,672 uniprot,742 uniprot,760 uniprot,780 uniprot,790 uniprot,906 uniprot,916 uniprot,954 uniprot,966 uniprot,970 uniprot,1020 uniprot,1037 uniprot,1072 uniprot,1099 uniprot,1218 uniprot,1241 uniprot,1244 uniprot,1333 uniprot,1607 uniprot,1635 uniprot,1854 uniprot,1888 uniprot,1989 uniprot,1994 uniprot,2041 protein-coding augustusGene,73 refGene,17 refGene,231 xenoRefGene,15 xenoRefGene,197 protein-genome uniprot,875 uniprot,1174 protein-protein uniprot,315 protein-to-genome uniprot,1703 proteins refGene,413 unipAliSwissprot,7 unipAliTrembl,7 uniprot,243 uniprot,744 uniprot,925 uniprot,929 uniprot,1005 uniprot,1188 uniprot,1364 uniprot,1385 uniprot,1404 uniprot,1470 xenoRefGene,378 provide uniprot,1860 provided uniprot,817 provides gap,32 gold,34 uniprot,489 providing augustusGene,254 ensGene,153 genscan,175 nestedRepeats,312 rmsk,335 provisional refGene,104 xenoRefGene,70 pruitt refGene,352 refGene,394 xenoRefGene,317 xenoRefGene,359 pseudogenes chainNeoSch1,223 chainNeoSch1,237 chainNetNeoSch1,226 chainNetNeoSch1,240 chainNetRn6,218 chainNetRn6,232 chainRn6,215 chainRn6,229 netNeoSch1,223 netNeoSch1,237 netRn6,215 netRn6,229 uniprot,1184 psl est,54 intronEst,138 mrna,35 transMapEnsemblV5,102 transMapEstV5,71 transMapRefSeqV5,71 transMapRnaV5,71 transMapV5,177 uniprot,1479 pslcdnafilter transMapEnsemblV5,351 transMapEstV5,320 transMapRefSeqV5,320 transMapRnaV5,320 transMapV5,426 pslmap transMapEnsemblV5,312 transMapEstV5,281 transMapRefSeqV5,281 transMapRnaV5,281 transMapV5,387 uniprot,889 uniprot,1497 uniprot,1528 uniprot,1880 uniprot,1900 pslreps uniprot,1482 uniprot,1502 public cpgIslandExt,537 cpgIslandExtUnmasked,540 cpgIslandSuper,537 ensGene,114 est,736 intronEst,820 mrna,453 transMapEnsemblV5,693 transMapEstV5,662 transMapRefSeqV5,662 transMapRnaV5,662 transMapV5,768 uniprot,709 publications uniprot,38 publicly nestedRepeats,275 pull-down refGene,205 xenoRefGene,171 purpose simpleRepeat,32 q uniprot,1904 uniprot,1914 q99697 uniprot,1926 qgap chainNeoSch1,735 chainNetNeoSch1,738 chainNetRn6,723 chainRn6,720 netNeoSch1,735 netRn6,720 quality est,72 mrna,53 queried cpgIslandExt,533 cpgIslandExtUnmasked,536 cpgIslandSuper,533 ensGene,105 transMapEnsemblV5,560 transMapEstV5,529 transMapRefSeqV5,529 transMapRnaV5,529 transMapV5,635 query rmsk,47 rmsk,61 uniprot,1484 questions uniprot,1834 quickly mrna,338 refGene,184 transMapEnsemblV5,122 transMapEstV5,91 transMapRefSeqV5,91 transMapRnaV5,91 transMapV5,197 xenoRefGene,150 quite simpleRepeat,45 quot chainNeoSch1,30 chainNeoSch1,32 chainNeoSch1,37 chainNeoSch1,39 chainNeoSch1,109 chainNeoSch1,111 chainNeoSch1,240 chainNeoSch1,242 chainNeoSch1,244 chainNeoSch1,246 chainNeoSch1,352 chainNeoSch1,354 chainNeoSch1,697 chainNeoSch1,699 chainNetNeoSch1,33 chainNetNeoSch1,35 chainNetNeoSch1,40 chainNetNeoSch1,42 chainNetNeoSch1,112 chainNetNeoSch1,114 chainNetNeoSch1,243 chainNetNeoSch1,245 chainNetNeoSch1,247 chainNetNeoSch1,249 chainNetNeoSch1,355 chainNetNeoSch1,357 chainNetNeoSch1,700 chainNetNeoSch1,702 chainNetRn6,30 chainNetRn6,32 chainNetRn6,37 chainNetRn6,39 chainNetRn6,106 chainNetRn6,108 chainNetRn6,235 chainNetRn6,237 chainNetRn6,239 chainNetRn6,241 chainNetRn6,344 chainNetRn6,346 chainNetRn6,685 chainNetRn6,687 chainRn6,27 chainRn6,29 chainRn6,34 chainRn6,36 chainRn6,103 chainRn6,105 chainRn6,232 chainRn6,234 chainRn6,236 chainRn6,238 chainRn6,341 chainRn6,343 chainRn6,682 chainRn6,684 est,238 est,240 est,289 est,291 est,305 est,307 est,341 est,343 est,358 est,360 gc5BaseBw,58 gc5BaseBw,62 intronEst,319 intronEst,321 intronEst,370 intronEst,372 intronEst,386 intronEst,388 intronEst,422 intronEst,424 intronEst,439 intronEst,441 mrna,184 mrna,186 mrna,235 mrna,237 mrna,251 mrna,253 mrna,287 mrna,289 mrna,304 mrna,306 netNeoSch1,30 netNeoSch1,32 netNeoSch1,37 netNeoSch1,39 netNeoSch1,109 netNeoSch1,111 netNeoSch1,240 netNeoSch1,242 netNeoSch1,244 netNeoSch1,246 netNeoSch1,352 netNeoSch1,354 netNeoSch1,697 netNeoSch1,699 netRn6,27 netRn6,29 netRn6,34 netRn6,36 netRn6,103 netRn6,105 netRn6,232 netRn6,234 netRn6,236 netRn6,238 netRn6,341 netRn6,343 netRn6,682 netRn6,684 rmsk,130 rmsk,133 rmsk,241 rmsk,242 rmsk,248 rmsk,250 rmsk,252 rmsk,254 rmsk,275 rmsk,276 uniprot,63 uniprot,66 uniprot,261 uniprot,263 uniprot,272 uniprot,274 uniprot,283 uniprot,285 uniprot,412 uniprot,416 uniprot,423 uniprot,426 uniprot,431 uniprot,435 uniprot,437 uniprot,441 uniprot,468 uniprot,470 uniprot,471 uniprot,474 uniprot,475 uniprot,478 uniprot,572 uniprot,575 windowmaskerSdust,82 windowmaskerSdust,84 r augustusGene,291 chainNeoSch1,1061 chainNeoSch1,1107 chainNetNeoSch1,1064 chainNetNeoSch1,1110 chainNetRn6,1049 chainNetRn6,1095 chainRn6,1046 chainRn6,1092 nestedRepeats,327 netNeoSch1,1061 netNeoSch1,1107 netRn6,1046 netRn6,1092 rmsk,350 transMapEnsemblV5,759 transMapEstV5,728 transMapRefSeqV5,728 transMapRnaV5,728 transMapV5,834 windowmaskerSdust,99 r.s chainNeoSch1,1026 chainNetNeoSch1,1029 chainNetRn6,1014 chainRn6,1011 netNeoSch1,1026 netRn6,1011 random augustusGene,119 est,571 intronEst,652 random-primed est,617 intronEst,698 raney uniprot,1960 range gap,135 nestedRepeats,227 nestedRepeats,236 transMapEnsemblV5,655 transMapEstV5,624 transMapRefSeqV5,624 transMapRnaV5,624 transMapV5,730 uniprot,1809 ranked chainNeoSch1,798 chainNetNeoSch1,801 chainNetRn6,786 chainRn6,783 netNeoSch1,798 netRn6,783 rare cpgIslandExt,57 cpgIslandExt,118 cpgIslandExtUnmasked,60 cpgIslandExtUnmasked,121 cpgIslandSuper,57 cpgIslandSuper,118 rat chainNetRn6,1 chainNetRn6,4 chainNetRn6,69 chainNetRn6,101 chainNetRn6,153 chainNetRn6,271 chainNetRn6,296 chainNetRn6,578 chainNetRn6,626 chainNetRn6Viewchain,2 chainNetRn6Viewnet,2 chainRn6,1 chainRn6,3 chainRn6,66 chainRn6,98 chainRn6,150 chainRn6,268 chainRn6,293 chainRn6,575 chainRn6,623 netRn6,1 netRn6,3 netRn6,66 netRn6,98 netRn6,150 netRn6,268 netRn6,293 netRn6,575 netRn6,623 rather est,572 intronEst,653 ratio cpgIslandExt,273 cpgIslandExt,349 cpgIslandExt,362 cpgIslandExtUnmasked,276 cpgIslandExtUnmasked,352 cpgIslandExtUnmasked,365 cpgIslandSuper,273 cpgIslandSuper,349 cpgIslandSuper,362 raw transMapEnsemblV5,518 transMapEstV5,487 transMapRefSeqV5,487 transMapRnaV5,487 transMapV5,593 uniprot,1708 rc chainNeoSch1,1109 chainNetNeoSch1,1112 chainNetRn6,1097 chainRn6,1094 netNeoSch1,1109 netRn6,1094 rmsk,200 read est,470 gap,94 intronEst,551 rearrangement chainNeoSch1,301 chainNeoSch1,506 chainNeoSch1,1074 chainNetNeoSch1,304 chainNetNeoSch1,509 chainNetNeoSch1,1077 chainNetRn6,294 chainNetRn6,498 chainNetRn6,1062 chainRn6,291 chainRn6,495 chainRn6,1059 netNeoSch1,301 netNeoSch1,506 netNeoSch1,1074 netRn6,291 netRn6,495 netRn6,1059 rearrangements nestedRepeats,99 reason cpgIslandExt,136 cpgIslandExtUnmasked,139 cpgIslandSuper,136 reasonably est,538 est,561 intronEst,619 intronEst,642 recently uniprot,1186 reciprocal transMapEnsemblV5,239 transMapEstV5,208 transMapRefSeqV5,208 transMapRnaV5,208 transMapV5,65 transMapV5,314 record refGene,99 uniprot,496 xenoRefGene,65 records refGene,62 reduced intronEst,104 refer ensGene,42 genscan,144 uniprot,1827 reference refGene,26 refGene,45 refGene,379 refGene,401 uniprot,1378 uniprot,1422 xenoRefGene,29 xenoRefGene,344 xenoRefGene,366 references augustusGene,285 chainNeoSch1,1024 chainNetNeoSch1,1027 chainNetRn6,1012 chainRn6,1009 cpgIslandExt,603 cpgIslandExtUnmasked,606 cpgIslandSuper,603 ensGene,52 ensGene,167 est,742 genscan,152 genscan,179 intronEst,826 microsat,113 mrna,459 nestedRepeats,66 nestedRepeats,323 netNeoSch1,1024 netRn6,1009 refGene,333 rmsk,102 rmsk,346 simpleRepeat,73 transMapEnsemblV5,710 transMapEstV5,679 transMapRefSeqV5,679 transMapRnaV5,679 transMapV5,785 uniprot,1984 windowmaskerSdust,89 xenoRefGene,299 refgene transMapEnsemblV5,592 transMapEstV5,561 transMapRefSeqV5,2 transMapRefSeqV5,561 transMapRnaV5,561 transMapV5,667 reflects rmsk,213 refseq refGene,1 refGene,3 refGene,11 refGene,29 refGene,47 refGene,61 refGene,98 refGene,250 refGene,331 refGene,374 refGene,403 transMapEnsemblV5,169 transMapEnsemblV5,704 transMapEstV5,138 transMapEstV5,673 transMapRefSeqV5,4 transMapRefSeqV5,17 transMapRefSeqV5,138 transMapRefSeqV5,673 transMapRnaV5,138 transMapRnaV5,673 transMapV5,244 transMapV5,779 uniprot,823 uniprot,828 uniprot,841 uniprot,845 uniprot,857 uniprot,864 uniprot,1002 uniprot,1010 uniprot,1055 uniprot,1207 uniprot,1236 uniprot,1276 uniprot,1290 xenoRefGene,2 xenoRefGene,4 xenoRefGene,32 xenoRefGene,64 xenoRefGene,297 xenoRefGene,339 xenoRefGene,368 regeneron uniprot,1968 region chainNeoSch1,208 chainNeoSch1,409 chainNetNeoSch1,211 chainNetNeoSch1,412 chainNetRn6,203 chainNetRn6,401 chainRn6,200 chainRn6,398 cpgIslandExt,129 cpgIslandExtUnmasked,132 cpgIslandSuper,129 netNeoSch1,208 netNeoSch1,409 netRn6,200 netRn6,398 uniprot,312 regions augustusGene,76 chainNeoSch1,20 chainNeoSch1,142 chainNeoSch1,294 chainNetNeoSch1,23 chainNetNeoSch1,145 chainNetNeoSch1,297 chainNetRn6,20 chainNetRn6,139 chainNetRn6,287 chainRn6,17 chainRn6,136 chainRn6,284 cpgIslandExt,41 cpgIslandExt,150 cpgIslandExt,182 cpgIslandExtUnmasked,44 cpgIslandExtUnmasked,153 cpgIslandExtUnmasked,185 cpgIslandSuper,41 cpgIslandSuper,150 cpgIslandSuper,182 genscan,48 microsat,14 netNeoSch1,20 netNeoSch1,142 netNeoSch1,294 netRn6,17 netRn6,136 netRn6,284 simpleRepeat,39 transMapEnsemblV5,301 transMapEnsemblV5,601 transMapEstV5,270 transMapEstV5,570 transMapRefSeqV5,270 transMapRefSeqV5,570 transMapRnaV5,270 transMapRnaV5,570 transMapV5,376 transMapV5,676 unipInterest,3 uniprot,240 uniprot,297 uniprot,300 uniprot,328 uniprot,348 uniprot,368 uniprot,384 regulation cpgIslandExt,13 cpgIslandExt,143 cpgIslandExtUnmasked,16 cpgIslandExtUnmasked,146 cpgIslandSuper,13 cpgIslandSuper,143 related augustusGene,242 transMapV5,74 uniprot,551 relationship chainNeoSch1,864 chainNetNeoSch1,867 chainNetRn6,852 chainRn6,849 est,93 intronEst,174 netNeoSch1,864 netRn6,849 relative chainNeoSch1,880 chainNetNeoSch1,883 chainNetRn6,868 chainRn6,865 gap,78 gold,109 netNeoSch1,880 netRn6,865 relatively cpgIslandExt,117 cpgIslandExtUnmasked,120 cpgIslandSuper,117 release uniprot,1589 releases uniprot,1561 uniprot,1686 relevant est,157 intronEst,238 mrna,103 uniprot,681 remain uniprot,1189 remaining chainNeoSch1,703 chainNetNeoSch1,706 chainNetRn6,691 chainRn6,688 netNeoSch1,703 netRn6,688 removed chainNeoSch1,592 chainNetNeoSch1,595 chainNetRn6,582 chainRn6,579 cpgIslandExt,331 cpgIslandExtUnmasked,334 cpgIslandSuper,331 netNeoSch1,592 netRn6,579 rmsk,279 uniprot,597 uniprot,1150 removes transMapEnsemblV5,306 transMapEstV5,275 transMapRefSeqV5,275 transMapRnaV5,275 transMapV5,381 reorganizing uniprot,1987 repbase nestedRepeats,45 nestedRepeats,57 nestedRepeats,335 nestedRepeats,342 rmsk,81 rmsk,93 rmsk,114 rmsk,358 rmsk,365 repeat cpgIslandExt,181 cpgIslandExt,191 cpgIslandExtUnmasked,184 cpgIslandExtUnmasked,194 cpgIslandSuper,181 cpgIslandSuper,191 microsat,83 nestedRepeats,85 nestedRepeats,122 nestedRepeats,135 nestedRepeats,257 nestedRepeats,316 rmsk,168 rmsk,175 rmsk,227 rmsk,339 simpleRepeat,47 repeated uniprot,386 uniprot,390 repeating rmsk,2 repeatmasker chainNeoSch1,961 chainNetNeoSch1,964 chainNetRn6,949 chainRn6,946 nestedRepeats,9 nestedRepeats,29 nestedRepeats,73 nestedRepeats,77 nestedRepeats,109 nestedRepeats,254 nestedRepeats,285 nestedRepeats,330 netNeoSch1,961 netRn6,946 rmsk,1 rmsk,5 rmsk,19 rmsk,78 rmsk,292 rmsk,353 repeats chainNeoSch1,953 chainNetNeoSch1,956 chainNetRn6,941 chainRn6,938 microsat,6 microsat,9 microsat,35 microsat,58 microsat,63 microsat,86 microsat,93 microsat,106 microsat,117 nestedRepeats,6 nestedRepeats,13 nestedRepeats,22 nestedRepeats,37 nestedRepeats,49 nestedRepeats,95 nestedRepeats,366 nestedRepeats,374 nestedRepeats,401 netNeoSch1,953 netRn6,938 rmsk,8 rmsk,27 rmsk,41 rmsk,68 rmsk,85 rmsk,152 rmsk,179 rmsk,183 rmsk,185 rmsk,187 rmsk,196 rmsk,303 rmsk,310 rmsk,389 rmsk,397 rmsk,424 simpleRepeat,2 simpleRepeat,5 simpleRepeat,10 simpleRepeat,17 simpleRepeat,20 simpleRepeat,24 simpleRepeat,34 simpleRepeat,77 unipRepeat,1 unipRepeat,3 uniprot,383 uniprot,440 windowmaskerSdust,11 repeats.bed windowmaskerSdust,73 windowmaskerSdust,75 repetitive nestedRepeats,351 rmsk,374 uniprot,1400 represent chainNeoSch1,140 chainNeoSch1,169 chainNeoSch1,456 chainNeoSch1,461 chainNetNeoSch1,143 chainNetNeoSch1,172 chainNetNeoSch1,459 chainNetNeoSch1,464 chainNetRn6,137 chainNetRn6,164 chainNetRn6,448 chainNetRn6,453 chainRn6,134 chainRn6,161 chainRn6,445 chainRn6,450 est,38 intronEst,50 netNeoSch1,140 netNeoSch1,169 netNeoSch1,456 netNeoSch1,461 netRn6,134 netRn6,161 netRn6,445 netRn6,450 represented gap,69 rmsk,49 representing gap,112 reproducibility uniprot,1645 requiring intronEst,92 res chainNeoSch1,1119 chainNetNeoSch1,1122 chainNetRn6,1107 chainRn6,1104 ensGene,197 est,760 est,785 est,805 intronEst,844 intronEst,869 intronEst,889 microsat,127 mrna,477 mrna,502 mrna,522 netNeoSch1,1119 netRn6,1104 refGene,342 refGene,383 refGene,416 simpleRepeat,87 transMapEnsemblV5,744 transMapEstV5,713 transMapRefSeqV5,713 transMapRnaV5,713 transMapV5,819 uniprot,1999 xenoRefGene,307 xenoRefGene,348 xenoRefGene,381 research nestedRepeats,54 rmsk,90 residues uniprot,344 resolve uniprot,1357 resolved uniprot,1284 resource uniprot,1995 uniprot,2033 rest cpgIslandExt,518 cpgIslandExtUnmasked,521 cpgIslandSuper,518 ensGene,108 result chainNeoSch1,182 chainNetNeoSch1,185 chainNetRn6,177 chainRn6,174 cpgIslandExt,112 cpgIslandExtUnmasked,115 cpgIslandSuper,112 netNeoSch1,182 netRn6,174 transMapEnsemblV5,504 transMapEstV5,473 transMapRefSeqV5,473 transMapRnaV5,473 transMapV5,579 uniprot,798 uniprot,1065 uniprot,1170 resulting chainNeoSch1,611 chainNetNeoSch1,614 chainNetRn6,601 chainRn6,598 netNeoSch1,611 netRn6,598 transMapEnsemblV5,81 transMapEnsemblV5,334 transMapEnsemblV5,346 transMapEnsemblV5,491 transMapEstV5,50 transMapEstV5,303 transMapEstV5,315 transMapEstV5,460 transMapRefSeqV5,50 transMapRefSeqV5,303 transMapRefSeqV5,315 transMapRefSeqV5,460 transMapRnaV5,50 transMapRnaV5,303 transMapRnaV5,315 transMapRnaV5,460 transMapV5,51 transMapV5,409 transMapV5,421 transMapV5,566 uniprot,874 uniprot,1137 uniprot,1308 results uniprot,1463 uniprot,1649 retained uniprot,795 retrieve est,580 intronEst,661 retroposons rmsk,173 reverse est,455 est,489 est,506 intronEst,536 intronEst,570 intronEst,587 review refGene,96 xenoRefGene,62 reviewed refGene,106 xenoRefGene,72 rgsc chainNetRn6,7 chainNetRn6,72 chainNetRn6,307 chainNetRn6Viewchain,5 chainNetRn6Viewnet,5 chainRn6,6 chainRn6,69 chainRn6,304 netRn6,6 netRn6,69 netRn6,304 riestra uniprot,1972 rn6 chainNetRn6,9 chainNetRn6,74 chainNetRn6,309 chainNetRn6Viewchain,7 chainNetRn6Viewnet,7 chainRn6,8 chainRn6,71 chainRn6,306 netRn6,8 netRn6,71 netRn6,306 rna est,101 est,449 intronEst,182 intronEst,530 refGene,25 refGene,273 refGene,319 rmsk,186 rmsk,189 transMapEnsemblV5,595 transMapEstV5,564 transMapRefSeqV5,564 transMapRnaV5,2 transMapRnaV5,5 transMapRnaV5,564 transMapV5,670 xenoRefGene,28 xenoRefGene,239 xenoRefGene,285 rnas refGene,251 xenoRefGene,217 robert chainNeoSch1,1001 chainNetNeoSch1,1004 chainNetRn6,989 chainRn6,986 nestedRepeats,307 netNeoSch1,1001 netRn6,986 rmsk,330 role uniprot,309 rolling rmsk,201 ross chainNeoSch1,950 chainNetNeoSch1,953 chainNetRn6,938 chainRn6,935 netNeoSch1,950 netRn6,935 row nestedRepeats,179 rpts nestedRepeats,2 rrna rmsk,191 run chainNeoSch1,666 chainNetNeoSch1,669 chainNetRn6,654 chainRn6,651 netNeoSch1,666 netRn6,651 windowmaskerSdust,53 s augustusGene,104 augustusGene,221 augustusGene,319 chainNeoSch1,1069 chainNeoSch1,1086 chainNeoSch1,1099 chainNetNeoSch1,1072 chainNetNeoSch1,1089 chainNetNeoSch1,1102 chainNetRn6,1057 chainNetRn6,1074 chainNetRn6,1087 chainRn6,1054 chainRn6,1071 chainRn6,1084 cpgIslandExt,436 cpgIslandExt,440 cpgIslandExt,442 cpgIslandExt,443 cpgIslandExt,445 cpgIslandExt,447 cpgIslandExt,453 cpgIslandExt,455 cpgIslandExtUnmasked,439 cpgIslandExtUnmasked,443 cpgIslandExtUnmasked,445 cpgIslandExtUnmasked,446 cpgIslandExtUnmasked,448 cpgIslandExtUnmasked,450 cpgIslandExtUnmasked,456 cpgIslandExtUnmasked,458 cpgIslandSuper,436 cpgIslandSuper,440 cpgIslandSuper,442 cpgIslandSuper,443 cpgIslandSuper,445 cpgIslandSuper,447 cpgIslandSuper,453 cpgIslandSuper,455 genscan,190 genscan,194 genscan,210 nestedRepeats,286 netNeoSch1,1069 netNeoSch1,1086 netNeoSch1,1099 netRn6,1054 netRn6,1071 netRn6,1084 rmsk,18 rmsk,293 transMapEnsemblV5,729 transMapEstV5,698 transMapRefSeqV5,698 transMapRnaV5,698 transMapV5,804 uniprot,751 uniprot,774 saccharomyces augustusGene,223 salzberg genscan,189 same chainNeoSch1,535 chainNeoSch1,550 chainNetNeoSch1,538 chainNetNeoSch1,553 chainNetRn6,527 chainNetRn6,542 chainRn6,524 chainRn6,539 nestedRepeats,143 netNeoSch1,535 netNeoSch1,550 netRn6,524 netRn6,539 uniprot,608 uniprot,612 uniprot,641 uniprot,1173 sample augustusGene,133 sampling augustusGene,129 sanborn transMapEnsemblV5,786 transMapEstV5,755 transMapRefSeqV5,755 transMapRnaV5,755 transMapV5,861 santa chainNeoSch1,974 chainNeoSch1,1019 chainNetNeoSch1,977 chainNetNeoSch1,1022 chainNetRn6,962 chainNetRn6,1007 chainRn6,959 chainRn6,1004 netNeoSch1,974 netNeoSch1,1019 netRn6,959 netRn6,1004 satellite rmsk,184 save cpgIslandExt,582 cpgIslandExtUnmasked,585 cpgIslandSuper,582 sayers est,755 intronEst,839 mrna,472 scaffold gap,124 gold,80 gold,118 scaffolds gap,127 sch windowmaskerSdust,94 scheib uniprot,2012 schwartz chainNeoSch1,941 chainNeoSch1,1098 chainNetNeoSch1,944 chainNetNeoSch1,1101 chainNetRn6,929 chainNetRn6,1086 chainRn6,926 chainRn6,1083 netNeoSch1,941 netNeoSch1,1098 netRn6,926 netRn6,1083 sci chainNeoSch1,1084 chainNetNeoSch1,1087 chainNetRn6,1072 chainRn6,1069 netNeoSch1,1084 netRn6,1069 science genscan,203 scientific uniprot,37 scientists est,740 intronEst,824 mrna,457 refGene,324 transMapEnsemblV5,697 transMapEstV5,666 transMapRefSeqV5,666 transMapRnaV5,666 transMapV5,772 xenoRefGene,290 score chainNeoSch1,695 chainNetNeoSch1,698 chainNetRn6,683 chainRn6,680 nestedRepeats,188 nestedRepeats,216 nestedRepeats,223 netNeoSch1,695 netRn6,680 uniprot,950 uniprot,1116 uniprot,1317 uniprot,1349 uniprot,1491 scores uniprot,1085 scoring chainNeoSch1,83 chainNeoSch1,93 chainNeoSch1,674 chainNeoSch1,691 chainNeoSch1,1046 chainNetNeoSch1,86 chainNetNeoSch1,96 chainNetNeoSch1,677 chainNetNeoSch1,694 chainNetNeoSch1,1049 chainNetRn6,82 chainNetRn6,92 chainNetRn6,662 chainNetRn6,679 chainNetRn6,1034 chainRn6,79 chainRn6,89 chainRn6,659 chainRn6,676 chainRn6,1031 cpgIslandExt,238 cpgIslandExt,251 cpgIslandExtUnmasked,241 cpgIslandExtUnmasked,254 cpgIslandSuper,238 cpgIslandSuper,251 netNeoSch1,83 netNeoSch1,93 netNeoSch1,674 netNeoSch1,691 netNeoSch1,1046 netRn6,79 netRn6,89 netRn6,659 netRn6,676 netRn6,1031 scott chainNeoSch1,940 chainNetNeoSch1,943 chainNetRn6,928 chainRn6,925 netNeoSch1,940 netRn6,925 screens nestedRepeats,32 rmsk,22 script uniprot,1549 scrna rmsk,193 sdust windowmaskerSdust,2 windowmaskerSdust,8 windowmaskerSdust,68 seal chainNeoSch1,3 chainNeoSch1,7 chainNeoSch1,71 chainNeoSch1,104 chainNeoSch1,158 chainNeoSch1,278 chainNeoSch1,305 chainNeoSch1,588 chainNeoSch1,638 chainNetNeoSch1,3 chainNetNeoSch1,8 chainNetNeoSch1,74 chainNetNeoSch1,107 chainNetNeoSch1,161 chainNetNeoSch1,281 chainNetNeoSch1,308 chainNetNeoSch1,591 chainNetNeoSch1,641 chainNetNeoSch1Viewchain,4 chainNetNeoSch1Viewnet,4 netNeoSch1,3 netNeoSch1,7 netNeoSch1,71 netNeoSch1,104 netNeoSch1,158 netNeoSch1,278 netNeoSch1,305 netNeoSch1,588 netNeoSch1,638 search transMapEnsemblV5,798 transMapEstV5,767 transMapRefSeqV5,767 transMapRnaV5,767 transMapV5,873 searching cpgIslandExt,230 cpgIslandExtUnmasked,233 cpgIslandSuper,230 searls genscan,191 secondary unipStruct,5 uniprot,361 secreted uniprot,247 section ensGene,53 genscan,153 nestedRepeats,67 rmsk,103 uniprot,897 sections chainNeoSch1,821 chainNetNeoSch1,824 chainNetRn6,809 chainRn6,806 netNeoSch1,821 netRn6,806 see augustusGene,42 ensGene,25 ensGene,161 genscan,57 intronEst,122 microsat,101 nestedRepeats,296 nestedRepeats,370 refGene,71 refGene,241 rmsk,319 rmsk,393 simpleRepeat,63 transMapEnsemblV5,229 transMapEnsemblV5,571 transMapEstV5,198 transMapEstV5,540 transMapRefSeqV5,198 transMapRefSeqV5,540 transMapRnaV5,198 transMapRnaV5,540 transMapV5,304 transMapV5,646 uniprot,188 uniprot,526 uniprot,768 uniprot,894 xenoRefGene,207 segment cpgIslandExt,254 cpgIslandExt,299 cpgIslandExtUnmasked,257 cpgIslandExtUnmasked,302 cpgIslandSuper,254 cpgIslandSuper,299 segments cpgIslandExt,252 cpgIslandExtUnmasked,255 cpgIslandSuper,252 select genscan,90 refGene,194 xenoRefGene,160 selected est,293 est,309 est,362 intronEst,374 intronEst,390 intronEst,443 mrna,239 mrna,255 mrna,308 transMapEnsemblV5,212 transMapEnsemblV5,249 transMapEnsemblV5,260 transMapEnsemblV5,328 transMapEstV5,181 transMapEstV5,218 transMapEstV5,229 transMapEstV5,297 transMapRefSeqV5,181 transMapRefSeqV5,218 transMapRefSeqV5,229 transMapRefSeqV5,297 transMapRnaV5,181 transMapRnaV5,218 transMapRnaV5,229 transMapRnaV5,297 transMapV5,287 transMapV5,324 transMapV5,335 transMapV5,403 uniprot,986 selecting microsat,60 selective cpgIslandExt,122 cpgIslandExtUnmasked,125 cpgIslandSuper,122 semi-markov augustusGene,117 sensitivity transMapV5,147 sep chainNeoSch1,1089 chainNetNeoSch1,1092 chainNetRn6,1077 chainRn6,1074 nestedRepeats,356 netNeoSch1,1089 netRn6,1074 rmsk,379 separated est,264 intronEst,345 mrna,210 seq unipConflict,1 sequence augustusGene,32 augustusGene,70 chainNeoSch1,176 chainNeoSch1,306 chainNeoSch1,1049 chainNetNeoSch1,179 chainNetNeoSch1,309 chainNetNeoSch1,1052 chainNetRn6,171 chainNetRn6,297 chainNetRn6,1037 chainRn6,168 chainRn6,294 chainRn6,1034 cpgIslandExt,232 cpgIslandExt,303 cpgIslandExt,325 cpgIslandExt,329 cpgIslandExt,397 cpgIslandExt,410 cpgIslandExtUnmasked,7 cpgIslandExtUnmasked,235 cpgIslandExtUnmasked,306 cpgIslandExtUnmasked,328 cpgIslandExtUnmasked,332 cpgIslandExtUnmasked,400 cpgIslandExtUnmasked,413 cpgIslandSuper,232 cpgIslandSuper,303 cpgIslandSuper,325 cpgIslandSuper,329 cpgIslandSuper,397 cpgIslandSuper,410 est,18 est,89 est,398 est,407 est,581 est,718 est,730 est,737 gap,54 gold,53 gold,157 intronEst,20 intronEst,73 intronEst,170 intronEst,479 intronEst,488 intronEst,662 intronEst,799 intronEst,814 intronEst,821 mrna,344 mrna,434 mrna,447 mrna,454 netNeoSch1,176 netNeoSch1,306 netNeoSch1,1049 netRn6,168 netRn6,294 netRn6,1034 refGene,308 refGene,320 refGene,402 refGene,407 rmsk,48 rmsk,62 transMapEnsemblV5,128 transMapEnsemblV5,687 transMapEnsemblV5,694 transMapEstV5,97 transMapEstV5,656 transMapEstV5,663 transMapRefSeqV5,97 transMapRefSeqV5,656 transMapRefSeqV5,663 transMapRnaV5,97 transMapRnaV5,656 transMapRnaV5,663 transMapV5,203 transMapV5,762 transMapV5,769 ucscToINSDC,7 ucscToINSDC,29 unipConflict,4 uniprot,356 uniprot,372 uniprot,381 uniprot,387 uniprot,636 uniprot,967 uniprot,971 uniprot,1134 uniprot,1219 uniprot,1242 uniprot,1379 uniprot,2035 windowmaskerSdust,17 xenoRefGene,274 xenoRefGene,286 xenoRefGene,367 xenoRefGene,372 sequenced windowmaskerSdust,104 sequences est,29 est,600 est,608 gold,13 intronEst,41 intronEst,681 intronEst,689 microsat,26 microsat,124 nestedRepeats,34 nestedRepeats,42 refGene,27 refGene,46 refGene,380 rmsk,24 rmsk,32 simpleRepeat,84 uniprot,16 uniprot,85 uniprot,112 uniprot,114 uniprot,131 uniprot,138 uniprot,166 uniprot,195 uniprot,197 uniprot,377 uniprot,673 uniprot,781 uniprot,1103 uniprot,1374 uniprot,1424 uniprot,1608 uniprot,1611 uniprot,1889 xenoRefGene,30 xenoRefGene,345 sequencing chainNeoSch1,903 chainNetNeoSch1,906 chainNetRn6,891 chainRn6,888 cytoBandIdeo,9 gap,6 gc5BaseBw,10 gold,7 netNeoSch1,903 netRn6,888 ucscToINSDC,12 server ensGene,144 transMapEnsemblV5,558 transMapEstV5,527 transMapRefSeqV5,527 transMapRnaV5,527 transMapV5,633 uniprot,1699 uniprot,1745 servers cpgIslandExt,539 cpgIslandExtUnmasked,542 cpgIslandSuper,539 ensGene,116 set transMapEnsemblV5,279 transMapEstV5,248 transMapRefSeqV5,248 transMapRnaV5,248 transMapV5,354 uniprot,838 uniprot,858 uniprot,1287 uniprot,1597 sets augustusGene,158 settings cpgIslandExt,213 cpgIslandExtUnmasked,216 cpgIslandSuper,213 several est,423 intronEst,504 mrna,362 transMapEnsemblV5,137 transMapEstV5,106 transMapRefSeqV5,106 transMapRnaV5,106 transMapV5,212 shade nestedRepeats,194 shaded est,67 mrna,48 nestedRepeats,182 shades nestedRepeats,202 shading intronEst,146 nestedRepeats,240 refGene,91 rmsk,208 rmsk,239 xenoRefGene,57 short rmsk,153 uniprot,460 uniprot,978 shotgun gold,151 should est,329 est,633 intronEst,410 intronEst,714 mrna,275 show intronEst,29 intronEst,62 refGene,157 uniprot,80 uniprot,227 uniprot,538 xenoRefGene,123 shown chainNeoSch1,45 chainNeoSch1,58 chainNetNeoSch1,48 chainNetNeoSch1,61 chainNetRn6,45 chainNetRn6,58 chainRn6,42 chainRn6,55 est,147 gold,101 intronEst,228 microsat,48 mrna,93 netNeoSch1,45 netNeoSch1,58 netRn6,42 netRn6,55 uniprot,504 uniprot,628 uniprot,646 uniprot,1580 uniprot,1631 shows augustusGene,15 augustusGene,108 chainNeoSch1,19 chainNeoSch1,66 chainNeoSch1,273 chainNetNeoSch1,22 chainNetNeoSch1,69 chainNetNeoSch1,276 chainNetRn6,19 chainNetRn6,66 chainNetRn6,268 chainRn6,16 chainRn6,63 chainRn6,265 est,13 gap,10 gc5BaseBw,16 genscan,13 gold,11 intronEst,15 mrna,14 nestedRepeats,17 nestedRepeats,81 netNeoSch1,19 netNeoSch1,66 netNeoSch1,273 netRn6,16 netRn6,63 netRn6,265 refGene,14 uniprot,14 uniprot,484 xenoRefGene,13 side est,596 gap,87 intronEst,677 siepel transMapEnsemblV5,711 transMapEstV5,680 transMapRefSeqV5,680 transMapRnaV5,680 transMapV5,786 signal augustusGene,48 augustusGene,63 unipLocSignal,1 unipLocSignal,4 uniprot,238 uniprot,476 uniprot,511 uniprot,564 signals genscan,34 genscan,187 significantly cpgIslandExt,156 cpgIslandExtUnmasked,159 cpgIslandSuper,156 signifies rmsk,258 signs intronEst,30 similar nestedRepeats,199 uniprot,1403 simple microsat,57 microsat,85 rmsk,178 simpleRepeat,1 simpleRepeat,3 simpleRepeat,15 simultaneously chainNeoSch1,107 chainNetNeoSch1,110 chainNetRn6,104 chainRn6,101 netNeoSch1,107 netRn6,101 since chainNeoSch1,584 chainNetNeoSch1,587 chainNetRn6,576 chainRn6,573 netNeoSch1,584 netRn6,573 uniprot,1383 sine rmsk,157 single chainNeoSch1,134 chainNeoSch1,143 chainNeoSch1,635 chainNeoSch1,642 chainNetNeoSch1,137 chainNetNeoSch1,146 chainNetNeoSch1,638 chainNetNeoSch1,645 chainNetRn6,131 chainNetRn6,140 chainNetRn6,625 chainNetRn6,630 chainRn6,128 chainRn6,137 chainRn6,622 chainRn6,627 est,630 est,682 intronEst,711 intronEst,763 mrna,398 nestedRepeats,178 netNeoSch1,134 netNeoSch1,143 netNeoSch1,635 netNeoSch1,642 netRn6,128 netRn6,137 netRn6,622 netRn6,627 refGene,272 transMapEnsemblV5,477 transMapEstV5,446 transMapRefSeqV5,446 transMapRnaV5,446 transMapV5,552 uniprot,141 xenoRefGene,238 single-lined chainNeoSch1,216 chainNetNeoSch1,219 chainNetRn6,211 chainRn6,208 netNeoSch1,216 netRn6,208 single-read est,28 intronEst,40 site genscan,157 windowmaskerSdust,45 sites augustusGene,54 augustusGene,59 cpgIslandExt,34 cpgIslandExtUnmasked,37 cpgIslandSuper,34 uniprot,342 uniprot,354 uniprot,578 uniprot,585 size gap,134 skepticism est,638 intronEst,719 sm refGene,357 xenoRefGene,322 smallsize chainNeoSch1,721 chainNetNeoSch1,724 chainNetRn6,709 chainRn6,706 netNeoSch1,721 netRn6,706 smit chainNeoSch1,958 chainNeoSch1,1102 chainNetNeoSch1,961 chainNetNeoSch1,1105 chainNetRn6,946 chainNetRn6,1090 chainRn6,943 chainRn6,1087 nestedRepeats,306 nestedRepeats,324 nestedRepeats,371 nestedRepeats,395 netNeoSch1,958 netNeoSch1,1102 netRn6,943 netRn6,1087 rmsk,17 rmsk,329 rmsk,347 rmsk,394 rmsk,418 snrna rmsk,192 so chainNeoSch1,448 chainNetNeoSch1,451 chainNetRn6,440 chainRn6,437 netNeoSch1,448 netRn6,437 uniprot,1135 uniprot,1430 soft-masked rmsk,305 software nestedRepeats,255 some cpgIslandExt,134 cpgIslandExtUnmasked,137 cpgIslandSuper,134 est,155 est,552 est,568 est,670 intronEst,236 intronEst,633 intronEst,649 intronEst,751 mrna,101 nestedRepeats,207 rmsk,105 rmsk,268 transMapEnsemblV5,297 transMapEnsemblV5,307 transMapEstV5,266 transMapEstV5,276 transMapRefSeqV5,266 transMapRefSeqV5,276 transMapRnaV5,266 transMapRnaV5,276 transMapV5,372 transMapV5,382 uniprot,318 sometimes simpleRepeat,50 uniprot,983 sort cpgIslandExt,483 cpgIslandExtUnmasked,486 cpgIslandSuper,483 sorted chainNeoSch1,790 chainNetNeoSch1,793 chainNetRn6,778 chainRn6,775 netNeoSch1,790 netRn6,775 uniprot,556 source cpgIslandExt,555 cpgIslandExtUnmasked,558 cpgIslandSuper,555 transMapEnsemblV5,152 transMapEnsemblV5,323 transMapEnsemblV5,340 transMapEnsemblV5,404 transMapEnsemblV5,429 transMapEnsemblV5,620 transMapEnsemblV5,634 transMapEstV5,121 transMapEstV5,292 transMapEstV5,309 transMapEstV5,373 transMapEstV5,398 transMapEstV5,589 transMapEstV5,603 transMapRefSeqV5,121 transMapRefSeqV5,292 transMapRefSeqV5,309 transMapRefSeqV5,373 transMapRefSeqV5,398 transMapRefSeqV5,589 transMapRefSeqV5,603 transMapRnaV5,121 transMapRnaV5,292 transMapRnaV5,309 transMapRnaV5,373 transMapRnaV5,398 transMapRnaV5,589 transMapRnaV5,603 transMapV5,227 transMapV5,398 transMapV5,415 transMapV5,479 transMapV5,504 transMapV5,695 transMapV5,709 uniprot,820 uniprot,1545 uniprot,1774 uniprot,1788 windowmaskerSdust,33 sources transMapEnsemblV5,48 transMapEnsemblV5,66 space est,267 intronEst,348 mrna,213 uniprot,1990 spaces gold,99 span chainNeoSch1,407 chainNetNeoSch1,410 chainNetRn6,399 chainRn6,396 netNeoSch1,407 netRn6,396 specialized simpleRepeat,29 species augustusGene,166 augustusGene,173 augustusGene,181 augustusGene,186 augustusGene,200 augustusGene,229 augustusGene,244 chainNeoSch1,124 chainNeoSch1,179 chainNeoSch1,198 chainNeoSch1,909 chainNetNeoSch1,127 chainNetNeoSch1,182 chainNetNeoSch1,201 chainNetNeoSch1,912 chainNetRn6,121 chainNetRn6,174 chainNetRn6,193 chainNetRn6,897 chainRn6,118 chainRn6,171 chainRn6,190 chainRn6,894 netNeoSch1,124 netNeoSch1,179 netNeoSch1,198 netNeoSch1,909 netRn6,118 netRn6,171 netRn6,190 netRn6,894 transMapEnsemblV5,32 transMapEnsemblV5,269 transMapEstV5,30 transMapEstV5,238 transMapRefSeqV5,30 transMapRefSeqV5,238 transMapRnaV5,30 transMapRnaV5,238 transMapV5,29 transMapV5,78 transMapV5,114 transMapV5,344 species-specific augustusGene,156 specific est,194 gap,33 gold,35 intronEst,275 mrna,140 simpleRepeat,53 specification gap,59 gold,58 splice augustusGene,53 genscan,156 uniprot,144 spliced intronEst,1 intronEst,8 intronEst,58 transMapEnsemblV5,175 transMapEstV5,17 transMapEstV5,144 transMapRefSeqV5,144 transMapRnaV5,144 transMapV5,250 splicing augustusGene,123 genscan,33 genscan,186 intronEst,32 intronEst,93 split chainNeoSch1,590 chainNetNeoSch1,593 chainNetRn6,580 chainRn6,577 netNeoSch1,590 netRn6,577 spontaneous cpgIslandExt,109 cpgIslandExtUnmasked,112 cpgIslandSuper,109 squish nestedRepeats,159 src cpgIslandExt,564 cpgIslandExtUnmasked,567 cpgIslandSuper,564 srcuniq transMapEnsemblV5,421 transMapEstV5,390 transMapRefSeqV5,390 transMapRnaV5,390 transMapV5,496 srprna rmsk,194 staff uniprot,42 uniprot,1965 stage uniprot,1228 stages cpgIslandExt,90 cpgIslandExtUnmasked,93 cpgIslandSuper,90 stanke augustusGene,103 augustusGene,251 augustusGene,284 augustusGene,286 augustusGene,316 transMapEnsemblV5,754 transMapEstV5,723 transMapRefSeqV5,723 transMapRnaV5,723 transMapV5,829 start augustusGene,58 cpgIslandExt,33 cpgIslandExtUnmasked,36 cpgIslandSuper,33 est,560 intronEst,641 transMapEnsemblV5,668 transMapEstV5,637 transMapRefSeqV5,637 transMapRnaV5,637 transMapV5,743 uniprot,125 uniprot,209 uniprot,1821 state chainNeoSch1,935 chainNeoSch1,1038 chainNetNeoSch1,938 chainNetNeoSch1,1041 chainNetRn6,923 chainNetRn6,1026 chainRn6,920 chainRn6,1023 netNeoSch1,935 netNeoSch1,1038 netRn6,920 netRn6,1023 statistical augustusGene,47 stdin cpgIslandExt,415 cpgIslandExt,420 cpgIslandExtUnmasked,418 cpgIslandExtUnmasked,423 cpgIslandSuper,415 cpgIslandSuper,420 stdout cpgIslandExt,413 cpgIslandExt,417 cpgIslandExtUnmasked,416 cpgIslandExtUnmasked,420 cpgIslandSuper,413 cpgIslandSuper,417 transMapEnsemblV5,672 transMapEstV5,641 transMapRefSeqV5,641 transMapRnaV5,641 transMapV5,747 uniprot,1825 stefanie augustusGene,267 step transMapEnsemblV5,305 transMapEstV5,274 transMapRefSeqV5,274 transMapRnaV5,274 transMapV5,380 uniprot,901 uniprot,1155 uniprot,1330 stevens transMapEnsemblV5,720 transMapEstV5,689 transMapRefSeqV5,689 transMapRnaV5,689 transMapV5,795 storage chainNeoSch1,992 chainNetNeoSch1,995 chainNetRn6,980 chainRn6,977 netNeoSch1,992 netRn6,977 stored transMapEnsemblV5,541 transMapEstV5,510 transMapRefSeqV5,510 transMapRnaV5,510 transMapV5,616 uniprot,1733 strand chainNeoSch1,256 chainNetNeoSch1,259 chainNetRn6,251 chainRn6,248 cpgIslandExt,80 cpgIslandExt,84 cpgIslandExtUnmasked,83 cpgIslandExtUnmasked,87 cpgIslandSuper,80 cpgIslandSuper,84 est,74 intronEst,155 nestedRepeats,144 nestedRepeats,155 netNeoSch1,256 netRn6,248 strands uniprot,365 strategy uniprot,1120 uniprot,1193 stringency transMapV5,119 structure augustusGene,113 unipStruct,1 unipStruct,6 uniprot,362 uniprot,2037 structures augustusGene,164 genscan,215 studying chainNeoSch1,299 chainNetNeoSch1,302 chainNetRn6,292 chainRn6,289 netNeoSch1,299 netRn6,289 subcellular uniprot,553 submit refGene,52 submitted est,732 intronEst,816 mrna,449 transMapEnsemblV5,689 transMapEstV5,658 transMapRefSeqV5,658 transMapRnaV5,658 transMapV5,764 submodel augustusGene,331 subsections chainNeoSch1,656 chainNetNeoSch1,659 chainNetRn6,644 chainRn6,641 netNeoSch1,656 netRn6,641 subsequent transMapEnsemblV5,439 transMapEstV5,408 transMapRefSeqV5,408 transMapRnaV5,408 transMapV5,514 subset est,133 intronEst,214 microsat,54 mrna,79 transMapEnsemblV5,206 transMapEstV5,175 transMapRefSeqV5,175 transMapRnaV5,175 transMapV5,281 substantial chainNeoSch1,175 chainNetNeoSch1,178 chainNetRn6,170 chainRn6,167 netNeoSch1,175 netRn6,167 subtrack uniprot,411 subtracks chainNeoSch1,33 chainNeoSch1,40 chainNetNeoSch1,36 chainNetNeoSch1,43 chainNetRn6,33 chainNetRn6,40 chainRn6,30 chainRn6,37 netNeoSch1,33 netNeoSch1,40 netRn6,30 netRn6,37 uniprot,59 uniprot,72 uniprot,520 uniprot,548 successful est,590 intronEst,671 such chainNeoSch1,870 chainNetNeoSch1,873 chainNetRn6,858 chainRn6,855 cpgIslandExt,65 cpgIslandExtUnmasked,68 cpgIslandSuper,65 netNeoSch1,870 netRn6,855 uniprot,306 suffix transMapEnsemblV5,398 transMapEstV5,367 transMapRefSeqV5,367 transMapRnaV5,367 transMapV5,473 uniprot,1255 suggestions refGene,51 suitable uniprot,1868 suppl augustusGene,336 supported gap,92 sure uniprot,1407 swiss-prot uniprot,2025 swissprot unipAliSwissprot,1 unipAliSwissprot,6 uniprot,3 uniprot,24 uniprot,31 uniprot,76 uniprot,109 uniprot,116 uniprot,127 uniprot,414 uniprot,454 uniprot,495 uniprot,623 uniprot,703 uniprot,1373 symp chainNeoSch1,1052 chainNetNeoSch1,1055 chainNetRn6,1040 chainRn6,1037 netNeoSch1,1052 netRn6,1037 syn chainNeoSch1,531 chainNetNeoSch1,534 chainNetRn6,523 chainRn6,520 netNeoSch1,531 netRn6,520 transMapEnsemblV5,253 transMapEstV5,222 transMapRefSeqV5,222 transMapRnaV5,222 transMapV5,328 syntenic chainNeoSch1,293 chainNeoSch1,877 chainNetNeoSch1,296 chainNetNeoSch1,880 chainNetRn6,286 chainNetRn6,865 chainRn6,283 chainRn6,862 netNeoSch1,293 netNeoSch1,877 netRn6,283 netRn6,862 transMapEnsemblV5,235 transMapEnsemblV5,514 transMapEstV5,204 transMapEstV5,483 transMapRefSeqV5,204 transMapRefSeqV5,483 transMapRnaV5,204 transMapRnaV5,483 transMapV5,310 transMapV5,589 syntenically augustusGene,297 transMapEnsemblV5,76 transMapEnsemblV5,765 transMapEstV5,45 transMapEstV5,734 transMapRefSeqV5,45 transMapRefSeqV5,734 transMapRnaV5,45 transMapRnaV5,734 transMapV5,44 transMapV5,840 synteny chainNeoSch1,36 chainNetNeoSch1,39 chainNetRn6,36 chainRn6,33 netNeoSch1,36 netRn6,33 transMapEnsemblV5,274 transMapEstV5,243 transMapRefSeqV5,243 transMapRnaV5,243 transMapV5,349 synteny-filtered transMapV5,82 synthesized cpgIslandExt,78 cpgIslandExtUnmasked,81 cpgIslandSuper,78 system chainNeoSch1,84 chainNetNeoSch1,87 chainNetRn6,83 chainRn6,80 netNeoSch1,84 netRn6,80 transMapEnsemblV5,630 transMapEstV5,599 transMapRefSeqV5,599 transMapRnaV5,599 transMapV5,705 uniprot,1353 uniprot,1784 systems chainNeoSch1,94 chainNetNeoSch1,97 chainNetRn6,93 chainRn6,90 netNeoSch1,94 netRn6,90 t cpgIslandExt,437 cpgIslandExt,439 cpgIslandExt,441 cpgIslandExt,444 cpgIslandExt,446 cpgIslandExt,448 cpgIslandExt,450 cpgIslandExt,452 cpgIslandExt,454 cpgIslandExtUnmasked,440 cpgIslandExtUnmasked,442 cpgIslandExtUnmasked,444 cpgIslandExtUnmasked,447 cpgIslandExtUnmasked,449 cpgIslandExtUnmasked,451 cpgIslandExtUnmasked,453 cpgIslandExtUnmasked,455 cpgIslandExtUnmasked,457 cpgIslandSuper,437 cpgIslandSuper,439 cpgIslandSuper,441 cpgIslandSuper,444 cpgIslandSuper,446 cpgIslandSuper,448 cpgIslandSuper,450 cpgIslandSuper,452 cpgIslandSuper,454 ensGene,169 ensGene,181 ensGene,187 refGene,397 xenoRefGene,362 t-100-25-9091 chainNetRn6,677 chainRn6,674 netRn6,674 t-123-31-11491 chainNeoSch1,689 chainNetNeoSch1,692 netNeoSch1,689 table augustusGene,225 cpgIslandExt,521 cpgIslandExtUnmasked,524 cpgIslandSuper,521 ensGene,66 est,219 est,222 est,241 intronEst,300 intronEst,303 intronEst,322 mrna,165 mrna,168 mrna,187 transMapEnsemblV5,529 transMapEstV5,498 transMapRefSeqV5,498 transMapRnaV5,498 transMapV5,604 uniprot,1720 windowmaskerSdust,85 tables cpgIslandExt,511 cpgIslandExt,529 cpgIslandExtUnmasked,514 cpgIslandExtUnmasked,532 cpgIslandSuper,511 cpgIslandSuper,529 uniprot,1301 tablesize chainNeoSch1,719 chainNetNeoSch1,722 chainNetRn6,707 chainRn6,704 netNeoSch1,719 netRn6,704 tags est,19 intronEst,21 tail est,501 intronEst,582 taken est,472 intronEst,553 refGene,21 xenoRefGene,24 tandem microsat,92 microsat,105 microsat,116 simpleRepeat,4 simpleRepeat,16 simpleRepeat,23 simpleRepeat,76 transMapEnsemblV5,506 transMapEstV5,475 transMapRefSeqV5,475 transMapRnaV5,475 transMapV5,581 targeted transMapEnsemblV5,734 transMapEstV5,703 transMapRefSeqV5,703 transMapRnaV5,703 transMapV5,809 task est,161 intronEst,242 mrna,107 tatusova refGene,396 xenoRefGene,361 tblastn uniprot,1476 techniques est,566 intronEst,647 temperature augustusGene,141 ten rmsk,148 tend cpgIslandExt,68 cpgIslandExt,102 cpgIslandExtUnmasked,71 cpgIslandExtUnmasked,105 cpgIslandSuper,68 cpgIslandSuper,102 microsat,37 term est,168 intronEst,249 mrna,114 terminal rmsk,167 terms est,212 est,258 intronEst,293 intronEst,339 mrna,158 mrna,204 text est,175 est,215 est,255 intronEst,256 intronEst,296 intronEst,336 mrna,121 mrna,161 mrna,201 uniprot,1763 tgap chainNeoSch1,747 chainNetNeoSch1,750 chainNetRn6,735 chainRn6,732 netNeoSch1,747 netRn6,732 th transMapEnsemblV5,793 transMapEstV5,762 transMapRefSeqV5,762 transMapRnaV5,762 transMapV5,868 than chainNeoSch1,89 chainNeoSch1,520 chainNetNeoSch1,92 chainNetNeoSch1,523 chainNetRn6,88 chainNetRn6,512 chainRn6,85 chainRn6,509 cpgIslandExt,159 cpgIslandExt,270 cpgIslandExt,275 cpgIslandExtUnmasked,162 cpgIslandExtUnmasked,273 cpgIslandExtUnmasked,278 cpgIslandSuper,159 cpgIslandSuper,270 cpgIslandSuper,275 est,280 est,573 intronEst,361 intronEst,654 mrna,226 nestedRepeats,213 nestedRepeats,271 netNeoSch1,89 netNeoSch1,520 netRn6,85 netRn6,509 refGene,266 transMapEnsemblV5,223 transMapEnsemblV5,373 transMapEstV5,192 transMapEstV5,342 transMapRefSeqV5,192 transMapRefSeqV5,342 transMapRnaV5,192 transMapRnaV5,342 transMapV5,107 transMapV5,148 transMapV5,298 transMapV5,448 xenoRefGene,22 xenoRefGene,232 thank ensGene,150 thanks augustusGene,248 genscan,170 nestedRepeats,303 rmsk,326 uniprot,1974 that chainNeoSch1,24 chainNeoSch1,49 chainNeoSch1,85 chainNeoSch1,147 chainNeoSch1,173 chainNeoSch1,379 chainNeoSch1,406 chainNeoSch1,428 chainNeoSch1,580 chainNeoSch1,840 chainNeoSch1,851 chainNetNeoSch1,27 chainNetNeoSch1,52 chainNetNeoSch1,88 chainNetNeoSch1,150 chainNetNeoSch1,176 chainNetNeoSch1,382 chainNetNeoSch1,409 chainNetNeoSch1,431 chainNetNeoSch1,583 chainNetNeoSch1,843 chainNetNeoSch1,854 chainNetRn6,24 chainNetRn6,49 chainNetRn6,84 chainNetRn6,144 chainNetRn6,168 chainNetRn6,371 chainNetRn6,398 chainNetRn6,420 chainNetRn6,572 chainNetRn6,828 chainNetRn6,839 chainRn6,21 chainRn6,46 chainRn6,81 chainRn6,141 chainRn6,165 chainRn6,368 chainRn6,395 chainRn6,417 chainRn6,569 chainRn6,825 chainRn6,836 cpgIslandExt,114 cpgIslandExt,178 cpgIslandExtUnmasked,117 cpgIslandExtUnmasked,181 cpgIslandSuper,114 cpgIslandSuper,178 est,36 est,63 est,117 est,224 est,248 est,296 est,311 est,328 est,352 est,370 est,387 est,402 est,655 est,676 genscan,141 gold,74 gold,144 intronEst,5 intronEst,28 intronEst,48 intronEst,198 intronEst,305 intronEst,329 intronEst,377 intronEst,392 intronEst,409 intronEst,433 intronEst,451 intronEst,468 intronEst,483 intronEst,736 intronEst,757 microsat,15 mrna,44 mrna,63 mrna,170 mrna,194 mrna,242 mrna,257 mrna,274 mrna,298 mrna,316 mrna,333 nestedRepeats,265 nestedRepeats,273 netNeoSch1,24 netNeoSch1,49 netNeoSch1,85 netNeoSch1,147 netNeoSch1,173 netNeoSch1,379 netNeoSch1,406 netNeoSch1,428 netNeoSch1,580 netNeoSch1,840 netNeoSch1,851 netRn6,21 netRn6,46 netRn6,81 netRn6,141 netRn6,165 netRn6,368 netRn6,395 netRn6,417 netRn6,569 netRn6,825 netRn6,836 refGene,180 rmsk,42 rmsk,259 transMapEnsemblV5,117 transMapEnsemblV5,193 transMapEnsemblV5,497 transMapEstV5,86 transMapEstV5,162 transMapEstV5,466 transMapRefSeqV5,86 transMapRefSeqV5,162 transMapRefSeqV5,466 transMapRnaV5,86 transMapRnaV5,162 transMapRnaV5,466 transMapV5,192 transMapV5,268 transMapV5,572 uniprot,167 uniprot,301 uniprot,696 uniprot,734 uniprot,745 uniprot,999 uniprot,1012 uniprot,1169 uniprot,1408 uniprot,1602 uniprot,1624 uniprot,1738 uniprot,1866 xenoRefGene,146 the augustusGene,20 augustusGene,25 augustusGene,30 augustusGene,38 augustusGene,61 augustusGene,69 augustusGene,81 augustusGene,109 augustusGene,143 augustusGene,165 augustusGene,172 augustusGene,177 augustusGene,185 augustusGene,240 augustusGene,250 augustusGene,255 augustusGene,258 augustusGene,261 augustusGene,272 augustusGene,275 chainNeoSch1,22 chainNeoSch1,41 chainNeoSch1,63 chainNeoSch1,77 chainNeoSch1,125 chainNeoSch1,138 chainNeoSch1,155 chainNeoSch1,164 chainNeoSch1,210 chainNeoSch1,213 chainNeoSch1,239 chainNeoSch1,249 chainNeoSch1,254 chainNeoSch1,262 chainNeoSch1,270 chainNeoSch1,274 chainNeoSch1,285 chainNeoSch1,302 chainNeoSch1,313 chainNeoSch1,327 chainNeoSch1,342 chainNeoSch1,348 chainNeoSch1,351 chainNeoSch1,366 chainNeoSch1,372 chainNeoSch1,376 chainNeoSch1,396 chainNeoSch1,402 chainNeoSch1,416 chainNeoSch1,434 chainNeoSch1,451 chainNeoSch1,454 chainNeoSch1,459 chainNeoSch1,472 chainNeoSch1,485 chainNeoSch1,487 chainNeoSch1,494 chainNeoSch1,497 chainNeoSch1,504 chainNeoSch1,510 chainNeoSch1,523 chainNeoSch1,534 chainNeoSch1,538 chainNeoSch1,541 chainNeoSch1,549 chainNeoSch1,553 chainNeoSch1,559 chainNeoSch1,570 chainNeoSch1,573 chainNeoSch1,585 chainNeoSch1,594 chainNeoSch1,596 chainNeoSch1,604 chainNeoSch1,610 chainNeoSch1,619 chainNeoSch1,622 chainNeoSch1,654 chainNeoSch1,659 chainNeoSch1,668 chainNeoSch1,672 chainNeoSch1,679 chainNeoSch1,702 chainNeoSch1,710 chainNeoSch1,780 chainNeoSch1,784 chainNeoSch1,792 chainNeoSch1,796 chainNeoSch1,800 chainNeoSch1,808 chainNeoSch1,853 chainNeoSch1,863 chainNeoSch1,882 chainNeoSch1,885 chainNeoSch1,897 chainNeoSch1,921 chainNeoSch1,963 chainNeoSch1,969 chainNeoSch1,987 chainNeoSch1,994 chainNeoSch1,1006 chainNeoSch1,1015 chainNeoSch1,1036 chainNeoSch1,1076 chainNetNeoSch1,25 chainNetNeoSch1,44 chainNetNeoSch1,66 chainNetNeoSch1,80 chainNetNeoSch1,128 chainNetNeoSch1,141 chainNetNeoSch1,158 chainNetNeoSch1,167 chainNetNeoSch1,213 chainNetNeoSch1,216 chainNetNeoSch1,242 chainNetNeoSch1,252 chainNetNeoSch1,257 chainNetNeoSch1,265 chainNetNeoSch1,273 chainNetNeoSch1,277 chainNetNeoSch1,288 chainNetNeoSch1,305 chainNetNeoSch1,316 chainNetNeoSch1,330 chainNetNeoSch1,345 chainNetNeoSch1,351 chainNetNeoSch1,354 chainNetNeoSch1,369 chainNetNeoSch1,375 chainNetNeoSch1,379 chainNetNeoSch1,399 chainNetNeoSch1,405 chainNetNeoSch1,419 chainNetNeoSch1,437 chainNetNeoSch1,454 chainNetNeoSch1,457 chainNetNeoSch1,462 chainNetNeoSch1,475 chainNetNeoSch1,488 chainNetNeoSch1,490 chainNetNeoSch1,497 chainNetNeoSch1,500 chainNetNeoSch1,507 chainNetNeoSch1,513 chainNetNeoSch1,526 chainNetNeoSch1,537 chainNetNeoSch1,541 chainNetNeoSch1,544 chainNetNeoSch1,552 chainNetNeoSch1,556 chainNetNeoSch1,562 chainNetNeoSch1,573 chainNetNeoSch1,576 chainNetNeoSch1,588 chainNetNeoSch1,597 chainNetNeoSch1,599 chainNetNeoSch1,607 chainNetNeoSch1,613 chainNetNeoSch1,622 chainNetNeoSch1,625 chainNetNeoSch1,657 chainNetNeoSch1,662 chainNetNeoSch1,671 chainNetNeoSch1,675 chainNetNeoSch1,682 chainNetNeoSch1,705 chainNetNeoSch1,713 chainNetNeoSch1,783 chainNetNeoSch1,787 chainNetNeoSch1,795 chainNetNeoSch1,799 chainNetNeoSch1,803 chainNetNeoSch1,811 chainNetNeoSch1,856 chainNetNeoSch1,866 chainNetNeoSch1,885 chainNetNeoSch1,888 chainNetNeoSch1,900 chainNetNeoSch1,924 chainNetNeoSch1,966 chainNetNeoSch1,972 chainNetNeoSch1,990 chainNetNeoSch1,997 chainNetNeoSch1,1009 chainNetNeoSch1,1018 chainNetNeoSch1,1039 chainNetNeoSch1,1079 chainNetRn6,22 chainNetRn6,41 chainNetRn6,63 chainNetRn6,76 chainNetRn6,122 chainNetRn6,135 chainNetRn6,152 chainNetRn6,159 chainNetRn6,205 chainNetRn6,208 chainNetRn6,234 chainNetRn6,244 chainNetRn6,249 chainNetRn6,257 chainNetRn6,265 chainNetRn6,269 chainNetRn6,278 chainNetRn6,295 chainNetRn6,304 chainNetRn6,319 chainNetRn6,334 chainNetRn6,340 chainNetRn6,343 chainNetRn6,358 chainNetRn6,364 chainNetRn6,368 chainNetRn6,388 chainNetRn6,394 chainNetRn6,408 chainNetRn6,426 chainNetRn6,443 chainNetRn6,446 chainNetRn6,451 chainNetRn6,464 chainNetRn6,477 chainNetRn6,479 chainNetRn6,486 chainNetRn6,489 chainNetRn6,496 chainNetRn6,502 chainNetRn6,515 chainNetRn6,526 chainNetRn6,530 chainNetRn6,533 chainNetRn6,541 chainNetRn6,545 chainNetRn6,551 chainNetRn6,562 chainNetRn6,565 chainNetRn6,577 chainNetRn6,584 chainNetRn6,586 chainNetRn6,594 chainNetRn6,600 chainNetRn6,609 chainNetRn6,612 chainNetRn6,642 chainNetRn6,647 chainNetRn6,656 chainNetRn6,660 chainNetRn6,667 chainNetRn6,690 chainNetRn6,698 chainNetRn6,768 chainNetRn6,772 chainNetRn6,780 chainNetRn6,784 chainNetRn6,788 chainNetRn6,796 chainNetRn6,841 chainNetRn6,851 chainNetRn6,870 chainNetRn6,873 chainNetRn6,885 chainNetRn6,909 chainNetRn6,951 chainNetRn6,957 chainNetRn6,975 chainNetRn6,982 chainNetRn6,994 chainNetRn6,1003 chainNetRn6,1024 chainNetRn6,1064 chainRn6,19 chainRn6,38 chainRn6,60 chainRn6,73 chainRn6,119 chainRn6,132 chainRn6,149 chainRn6,156 chainRn6,202 chainRn6,205 chainRn6,231 chainRn6,241 chainRn6,246 chainRn6,254 chainRn6,262 chainRn6,266 chainRn6,275 chainRn6,292 chainRn6,301 chainRn6,316 chainRn6,331 chainRn6,337 chainRn6,340 chainRn6,355 chainRn6,361 chainRn6,365 chainRn6,385 chainRn6,391 chainRn6,405 chainRn6,423 chainRn6,440 chainRn6,443 chainRn6,448 chainRn6,461 chainRn6,474 chainRn6,476 chainRn6,483 chainRn6,486 chainRn6,493 chainRn6,499 chainRn6,512 chainRn6,523 chainRn6,527 chainRn6,530 chainRn6,538 chainRn6,542 chainRn6,548 chainRn6,559 chainRn6,562 chainRn6,574 chainRn6,581 chainRn6,583 chainRn6,591 chainRn6,597 chainRn6,606 chainRn6,609 chainRn6,639 chainRn6,644 chainRn6,653 chainRn6,657 chainRn6,664 chainRn6,687 chainRn6,695 chainRn6,765 chainRn6,769 chainRn6,777 chainRn6,781 chainRn6,785 chainRn6,793 chainRn6,838 chainRn6,848 chainRn6,867 chainRn6,870 chainRn6,882 chainRn6,906 chainRn6,948 chainRn6,954 chainRn6,972 chainRn6,979 chainRn6,991 chainRn6,1000 chainRn6,1021 chainRn6,1061 cpgIslandExt,62 cpgIslandExt,76 cpgIslandExt,82 cpgIslandExt,88 cpgIslandExt,111 cpgIslandExt,142 cpgIslandExt,163 cpgIslandExt,168 cpgIslandExt,172 cpgIslandExt,190 cpgIslandExt,197 cpgIslandExt,201 cpgIslandExt,207 cpgIslandExt,211 cpgIslandExt,215 cpgIslandExt,219 cpgIslandExt,231 cpgIslandExt,259 cpgIslandExt,284 cpgIslandExt,288 cpgIslandExt,291 cpgIslandExt,298 cpgIslandExt,300 cpgIslandExt,310 cpgIslandExt,313 cpgIslandExt,317 cpgIslandExt,324 cpgIslandExt,332 cpgIslandExt,336 cpgIslandExt,342 cpgIslandExt,344 cpgIslandExt,348 cpgIslandExt,355 cpgIslandExt,359 cpgIslandExt,361 cpgIslandExt,372 cpgIslandExt,398 cpgIslandExt,401 cpgIslandExt,407 cpgIslandExt,490 cpgIslandExt,501 cpgIslandExt,517 cpgIslandExt,520 cpgIslandExt,524 cpgIslandExt,528 cpgIslandExt,554 cpgIslandExt,557 cpgIslandExt,567 cpgIslandExtUnmasked,65 cpgIslandExtUnmasked,79 cpgIslandExtUnmasked,85 cpgIslandExtUnmasked,91 cpgIslandExtUnmasked,114 cpgIslandExtUnmasked,145 cpgIslandExtUnmasked,166 cpgIslandExtUnmasked,171 cpgIslandExtUnmasked,175 cpgIslandExtUnmasked,193 cpgIslandExtUnmasked,200 cpgIslandExtUnmasked,204 cpgIslandExtUnmasked,210 cpgIslandExtUnmasked,214 cpgIslandExtUnmasked,218 cpgIslandExtUnmasked,222 cpgIslandExtUnmasked,234 cpgIslandExtUnmasked,262 cpgIslandExtUnmasked,287 cpgIslandExtUnmasked,291 cpgIslandExtUnmasked,294 cpgIslandExtUnmasked,301 cpgIslandExtUnmasked,303 cpgIslandExtUnmasked,313 cpgIslandExtUnmasked,316 cpgIslandExtUnmasked,320 cpgIslandExtUnmasked,327 cpgIslandExtUnmasked,335 cpgIslandExtUnmasked,339 cpgIslandExtUnmasked,345 cpgIslandExtUnmasked,347 cpgIslandExtUnmasked,351 cpgIslandExtUnmasked,358 cpgIslandExtUnmasked,362 cpgIslandExtUnmasked,364 cpgIslandExtUnmasked,375 cpgIslandExtUnmasked,401 cpgIslandExtUnmasked,404 cpgIslandExtUnmasked,410 cpgIslandExtUnmasked,493 cpgIslandExtUnmasked,504 cpgIslandExtUnmasked,520 cpgIslandExtUnmasked,523 cpgIslandExtUnmasked,527 cpgIslandExtUnmasked,531 cpgIslandExtUnmasked,557 cpgIslandExtUnmasked,560 cpgIslandExtUnmasked,570 cpgIslandSuper,62 cpgIslandSuper,76 cpgIslandSuper,82 cpgIslandSuper,88 cpgIslandSuper,111 cpgIslandSuper,142 cpgIslandSuper,163 cpgIslandSuper,168 cpgIslandSuper,172 cpgIslandSuper,190 cpgIslandSuper,197 cpgIslandSuper,201 cpgIslandSuper,207 cpgIslandSuper,211 cpgIslandSuper,215 cpgIslandSuper,219 cpgIslandSuper,231 cpgIslandSuper,259 cpgIslandSuper,284 cpgIslandSuper,288 cpgIslandSuper,291 cpgIslandSuper,298 cpgIslandSuper,300 cpgIslandSuper,310 cpgIslandSuper,313 cpgIslandSuper,317 cpgIslandSuper,324 cpgIslandSuper,332 cpgIslandSuper,336 cpgIslandSuper,342 cpgIslandSuper,344 cpgIslandSuper,348 cpgIslandSuper,355 cpgIslandSuper,359 cpgIslandSuper,361 cpgIslandSuper,372 cpgIslandSuper,398 cpgIslandSuper,401 cpgIslandSuper,407 cpgIslandSuper,490 cpgIslandSuper,501 cpgIslandSuper,517 cpgIslandSuper,520 cpgIslandSuper,524 cpgIslandSuper,528 cpgIslandSuper,554 cpgIslandSuper,557 cpgIslandSuper,567 ensGene,21 ensGene,34 ensGene,51 ensGene,65 ensGene,69 ensGene,75 ensGene,101 ensGene,107 ensGene,190 est,24 est,50 est,61 est,73 est,77 est,80 est,83 est,86 est,95 est,100 est,108 est,123 est,127 est,137 est,149 est,159 est,164 est,174 est,179 est,186 est,197 est,200 est,203 est,208 est,218 est,221 est,227 est,237 est,244 est,253 est,274 est,284 est,316 est,323 est,337 est,346 est,354 est,363 est,372 est,389 est,396 est,405 est,416 est,437 est,460 est,474 est,488 est,499 est,505 est,515 est,519 est,530 est,534 est,541 est,550 est,554 est,564 est,584 est,610 est,616 est,650 est,656 est,688 est,691 est,707 est,716 est,734 est,800 gap,11 gap,14 gap,26 gap,38 gap,41 gap,48 gap,53 gap,55 gap,61 gap,64 gap,77 gap,83 gap,89 gap,109 gap,113 gap,118 gc5BaseBw,12 gc5BaseBw,17 gc5BaseBw,53 gc5BaseBw,57 gc5BaseBw,68 gc5BaseBw,72 genscan,16 genscan,23 genscan,38 genscan,53 genscan,68 genscan,75 genscan,80 genscan,91 genscan,115 genscan,135 genscan,139 genscan,151 genscan,155 genscan,176 gold,12 gold,16 gold,28 gold,40 gold,47 gold,52 gold,54 gold,60 gold,63 gold,72 gold,77 gold,86 gold,103 gold,108 gold,114 gold,128 gold,133 intronEst,26 intronEst,36 intronEst,71 intronEst,94 intronEst,99 intronEst,106 intronEst,123 intronEst,134 intronEst,154 intronEst,158 intronEst,161 intronEst,164 intronEst,167 intronEst,176 intronEst,181 intronEst,189 intronEst,204 intronEst,208 intronEst,218 intronEst,230 intronEst,240 intronEst,245 intronEst,255 intronEst,260 intronEst,267 intronEst,278 intronEst,281 intronEst,284 intronEst,289 intronEst,299 intronEst,302 intronEst,308 intronEst,318 intronEst,325 intronEst,334 intronEst,355 intronEst,365 intronEst,397 intronEst,404 intronEst,418 intronEst,427 intronEst,435 intronEst,444 intronEst,453 intronEst,470 intronEst,477 intronEst,486 intronEst,497 intronEst,518 intronEst,541 intronEst,555 intronEst,569 intronEst,580 intronEst,586 intronEst,596 intronEst,600 intronEst,611 intronEst,615 intronEst,622 intronEst,631 intronEst,635 intronEst,645 intronEst,665 intronEst,691 intronEst,697 intronEst,731 intronEst,737 intronEst,769 intronEst,772 intronEst,788 intronEst,797 intronEst,818 intronEst,884 microsat,43 microsat,46 microsat,56 microsat,82 microsat,84 microsat,91 mrna,11 mrna,22 mrna,31 mrna,42 mrna,54 mrna,69 mrna,73 mrna,83 mrna,95 mrna,105 mrna,110 mrna,120 mrna,125 mrna,132 mrna,143 mrna,146 mrna,149 mrna,154 mrna,164 mrna,167 mrna,173 mrna,183 mrna,190 mrna,199 mrna,220 mrna,230 mrna,262 mrna,269 mrna,283 mrna,292 mrna,300 mrna,309 mrna,318 mrna,335 mrna,342 mrna,353 mrna,376 mrna,390 mrna,393 mrna,404 mrna,407 mrna,423 mrna,432 mrna,438 mrna,451 mrna,517 nestedRepeats,25 nestedRepeats,28 nestedRepeats,44 nestedRepeats,51 nestedRepeats,65 nestedRepeats,69 nestedRepeats,76 nestedRepeats,100 nestedRepeats,105 nestedRepeats,134 nestedRepeats,142 nestedRepeats,149 nestedRepeats,154 nestedRepeats,185 nestedRepeats,193 nestedRepeats,201 nestedRepeats,215 nestedRepeats,220 nestedRepeats,235 nestedRepeats,242 nestedRepeats,248 nestedRepeats,253 nestedRepeats,278 nestedRepeats,284 nestedRepeats,297 nestedRepeats,313 nestedRepeats,397 nestedRepeats,403 netNeoSch1,22 netNeoSch1,41 netNeoSch1,63 netNeoSch1,77 netNeoSch1,125 netNeoSch1,138 netNeoSch1,155 netNeoSch1,164 netNeoSch1,210 netNeoSch1,213 netNeoSch1,239 netNeoSch1,249 netNeoSch1,254 netNeoSch1,262 netNeoSch1,270 netNeoSch1,274 netNeoSch1,285 netNeoSch1,302 netNeoSch1,313 netNeoSch1,327 netNeoSch1,342 netNeoSch1,348 netNeoSch1,351 netNeoSch1,366 netNeoSch1,372 netNeoSch1,376 netNeoSch1,396 netNeoSch1,402 netNeoSch1,416 netNeoSch1,434 netNeoSch1,451 netNeoSch1,454 netNeoSch1,459 netNeoSch1,472 netNeoSch1,485 netNeoSch1,487 netNeoSch1,494 netNeoSch1,497 netNeoSch1,504 netNeoSch1,510 netNeoSch1,523 netNeoSch1,534 netNeoSch1,538 netNeoSch1,541 netNeoSch1,549 netNeoSch1,553 netNeoSch1,559 netNeoSch1,570 netNeoSch1,573 netNeoSch1,585 netNeoSch1,594 netNeoSch1,596 netNeoSch1,604 netNeoSch1,610 netNeoSch1,619 netNeoSch1,622 netNeoSch1,654 netNeoSch1,659 netNeoSch1,668 netNeoSch1,672 netNeoSch1,679 netNeoSch1,702 netNeoSch1,710 netNeoSch1,780 netNeoSch1,784 netNeoSch1,792 netNeoSch1,796 netNeoSch1,800 netNeoSch1,808 netNeoSch1,853 netNeoSch1,863 netNeoSch1,882 netNeoSch1,885 netNeoSch1,897 netNeoSch1,921 netNeoSch1,963 netNeoSch1,969 netNeoSch1,987 netNeoSch1,994 netNeoSch1,1006 netNeoSch1,1015 netNeoSch1,1036 netNeoSch1,1076 netRn6,19 netRn6,38 netRn6,60 netRn6,73 netRn6,119 netRn6,132 netRn6,149 netRn6,156 netRn6,202 netRn6,205 netRn6,231 netRn6,241 netRn6,246 netRn6,254 netRn6,262 netRn6,266 netRn6,275 netRn6,292 netRn6,301 netRn6,316 netRn6,331 netRn6,337 netRn6,340 netRn6,355 netRn6,361 netRn6,365 netRn6,385 netRn6,391 netRn6,405 netRn6,423 netRn6,440 netRn6,443 netRn6,448 netRn6,461 netRn6,474 netRn6,476 netRn6,483 netRn6,486 netRn6,493 netRn6,499 netRn6,512 netRn6,523 netRn6,527 netRn6,530 netRn6,538 netRn6,542 netRn6,548 netRn6,559 netRn6,562 netRn6,574 netRn6,581 netRn6,583 netRn6,591 netRn6,597 netRn6,606 netRn6,609 netRn6,639 netRn6,644 netRn6,653 netRn6,657 netRn6,664 netRn6,687 netRn6,695 netRn6,765 netRn6,769 netRn6,777 netRn6,781 netRn6,785 netRn6,793 netRn6,838 netRn6,848 netRn6,867 netRn6,870 netRn6,882 netRn6,906 netRn6,948 netRn6,954 netRn6,972 netRn6,979 netRn6,991 netRn6,1000 netRn6,1021 netRn6,1061 refGene,10 refGene,23 refGene,30 refGene,40 refGene,67 refGene,82 refGene,89 refGene,93 refGene,97 refGene,108 refGene,123 refGene,126 refGene,129 refGene,143 refGene,149 refGene,154 refGene,159 refGene,167 refGene,195 refGene,200 refGene,215 refGene,230 refGene,243 refGene,255 refGene,278 refGene,281 refGene,297 refGene,306 refGene,329 refGene,337 rmsk,33 rmsk,40 rmsk,46 rmsk,60 rmsk,66 rmsk,75 rmsk,80 rmsk,87 rmsk,101 rmsk,118 rmsk,204 rmsk,210 rmsk,214 rmsk,229 rmsk,231 rmsk,236 rmsk,238 rmsk,244 rmsk,247 rmsk,260 rmsk,265 rmsk,271 rmsk,274 rmsk,281 rmsk,291 rmsk,320 rmsk,336 rmsk,420 rmsk,426 simpleRepeat,60 transMapEnsemblV5,24 transMapEnsemblV5,34 transMapEnsemblV5,71 transMapEnsemblV5,86 transMapEnsemblV5,98 transMapEnsemblV5,119 transMapEnsemblV5,126 transMapEnsemblV5,161 transMapEnsemblV5,178 transMapEnsemblV5,201 transMapEnsemblV5,208 transMapEnsemblV5,251 transMapEnsemblV5,255 transMapEnsemblV5,259 transMapEnsemblV5,271 transMapEnsemblV5,277 transMapEnsemblV5,294 transMapEnsemblV5,302 transMapEnsemblV5,309 transMapEnsemblV5,311 transMapEnsemblV5,322 transMapEnsemblV5,327 transMapEnsemblV5,331 transMapEnsemblV5,339 transMapEnsemblV5,343 transMapEnsemblV5,345 transMapEnsemblV5,376 transMapEnsemblV5,403 transMapEnsemblV5,413 transMapEnsemblV5,416 transMapEnsemblV5,438 transMapEnsemblV5,447 transMapEnsemblV5,460 transMapEnsemblV5,470 transMapEnsemblV5,482 transMapEnsemblV5,503 transMapEnsemblV5,517 transMapEnsemblV5,528 transMapEnsemblV5,532 transMapEnsemblV5,538 transMapEnsemblV5,577 transMapEnsemblV5,585 transMapEnsemblV5,603 transMapEnsemblV5,619 transMapEnsemblV5,642 transMapEnsemblV5,691 transMapEnsemblV5,703 transMapEnsemblV5,805 transMapEstV5,22 transMapEstV5,32 transMapEstV5,40 transMapEstV5,55 transMapEstV5,67 transMapEstV5,88 transMapEstV5,95 transMapEstV5,130 transMapEstV5,147 transMapEstV5,170 transMapEstV5,177 transMapEstV5,220 transMapEstV5,224 transMapEstV5,228 transMapEstV5,240 transMapEstV5,246 transMapEstV5,263 transMapEstV5,271 transMapEstV5,278 transMapEstV5,280 transMapEstV5,291 transMapEstV5,296 transMapEstV5,300 transMapEstV5,308 transMapEstV5,312 transMapEstV5,314 transMapEstV5,345 transMapEstV5,372 transMapEstV5,382 transMapEstV5,385 transMapEstV5,407 transMapEstV5,416 transMapEstV5,429 transMapEstV5,439 transMapEstV5,451 transMapEstV5,472 transMapEstV5,486 transMapEstV5,497 transMapEstV5,501 transMapEstV5,507 transMapEstV5,546 transMapEstV5,554 transMapEstV5,572 transMapEstV5,588 transMapEstV5,611 transMapEstV5,660 transMapEstV5,672 transMapEstV5,774 transMapRefSeqV5,22 transMapRefSeqV5,32 transMapRefSeqV5,40 transMapRefSeqV5,55 transMapRefSeqV5,67 transMapRefSeqV5,88 transMapRefSeqV5,95 transMapRefSeqV5,130 transMapRefSeqV5,147 transMapRefSeqV5,170 transMapRefSeqV5,177 transMapRefSeqV5,220 transMapRefSeqV5,224 transMapRefSeqV5,228 transMapRefSeqV5,240 transMapRefSeqV5,246 transMapRefSeqV5,263 transMapRefSeqV5,271 transMapRefSeqV5,278 transMapRefSeqV5,280 transMapRefSeqV5,291 transMapRefSeqV5,296 transMapRefSeqV5,300 transMapRefSeqV5,308 transMapRefSeqV5,312 transMapRefSeqV5,314 transMapRefSeqV5,345 transMapRefSeqV5,372 transMapRefSeqV5,382 transMapRefSeqV5,385 transMapRefSeqV5,407 transMapRefSeqV5,416 transMapRefSeqV5,429 transMapRefSeqV5,439 transMapRefSeqV5,451 transMapRefSeqV5,472 transMapRefSeqV5,486 transMapRefSeqV5,497 transMapRefSeqV5,501 transMapRefSeqV5,507 transMapRefSeqV5,546 transMapRefSeqV5,554 transMapRefSeqV5,572 transMapRefSeqV5,588 transMapRefSeqV5,611 transMapRefSeqV5,660 transMapRefSeqV5,672 transMapRefSeqV5,774 transMapRnaV5,22 transMapRnaV5,32 transMapRnaV5,40 transMapRnaV5,55 transMapRnaV5,67 transMapRnaV5,88 transMapRnaV5,95 transMapRnaV5,130 transMapRnaV5,147 transMapRnaV5,170 transMapRnaV5,177 transMapRnaV5,220 transMapRnaV5,224 transMapRnaV5,228 transMapRnaV5,240 transMapRnaV5,246 transMapRnaV5,263 transMapRnaV5,271 transMapRnaV5,278 transMapRnaV5,280 transMapRnaV5,291 transMapRnaV5,296 transMapRnaV5,300 transMapRnaV5,308 transMapRnaV5,312 transMapRnaV5,314 transMapRnaV5,345 transMapRnaV5,372 transMapRnaV5,382 transMapRnaV5,385 transMapRnaV5,407 transMapRnaV5,416 transMapRnaV5,429 transMapRnaV5,439 transMapRnaV5,451 transMapRnaV5,472 transMapRnaV5,486 transMapRnaV5,497 transMapRnaV5,501 transMapRnaV5,507 transMapRnaV5,546 transMapRnaV5,554 transMapRnaV5,572 transMapRnaV5,588 transMapRnaV5,611 transMapRnaV5,660 transMapRnaV5,672 transMapRnaV5,774 transMapV5,21 transMapV5,31 transMapV5,39 transMapV5,56 transMapV5,91 transMapV5,98 transMapV5,103 transMapV5,121 transMapV5,126 transMapV5,132 transMapV5,136 transMapV5,173 transMapV5,194 transMapV5,201 transMapV5,236 transMapV5,253 transMapV5,276 transMapV5,283 transMapV5,326 transMapV5,330 transMapV5,334 transMapV5,346 transMapV5,352 transMapV5,369 transMapV5,377 transMapV5,384 transMapV5,386 transMapV5,397 transMapV5,402 transMapV5,406 transMapV5,414 transMapV5,418 transMapV5,420 transMapV5,451 transMapV5,478 transMapV5,488 transMapV5,491 transMapV5,513 transMapV5,522 transMapV5,535 transMapV5,545 transMapV5,557 transMapV5,578 transMapV5,592 transMapV5,603 transMapV5,607 transMapV5,613 transMapV5,652 transMapV5,660 transMapV5,678 transMapV5,694 transMapV5,717 transMapV5,766 transMapV5,778 transMapV5,880 ucscToINSDC,26 ucscToINSDC,33 ucscToINSDC,38 ucscToINSDC,43 uniprot,22 uniprot,40 uniprot,53 uniprot,69 uniprot,81 uniprot,87 uniprot,94 uniprot,102 uniprot,119 uniprot,184 uniprot,202 uniprot,215 uniprot,233 uniprot,259 uniprot,270 uniprot,281 uniprot,308 uniprot,379 uniprot,410 uniprot,421 uniprot,428 uniprot,444 uniprot,463 uniprot,485 uniprot,493 uniprot,510 uniprot,527 uniprot,534 uniprot,539 uniprot,543 uniprot,547 uniprot,562 uniprot,571 uniprot,607 uniprot,640 uniprot,649 uniprot,668 uniprot,698 uniprot,748 uniprot,785 uniprot,789 uniprot,791 uniprot,797 uniprot,802 uniprot,810 uniprot,812 uniprot,819 uniprot,832 uniprot,836 uniprot,855 uniprot,873 uniprot,883 uniprot,903 uniprot,913 uniprot,923 uniprot,927 uniprot,935 uniprot,944 uniprot,947 uniprot,953 uniprot,961 uniprot,969 uniprot,1009 uniprot,1036 uniprot,1039 uniprot,1054 uniprot,1090 uniprot,1112 uniprot,1126 uniprot,1136 uniprot,1140 uniprot,1156 uniprot,1172 uniprot,1212 uniprot,1221 uniprot,1243 uniprot,1253 uniprot,1267 uniprot,1273 uniprot,1278 uniprot,1294 uniprot,1303 uniprot,1307 uniprot,1321 uniprot,1332 uniprot,1339 uniprot,1358 uniprot,1372 uniprot,1376 uniprot,1384 uniprot,1388 uniprot,1409 uniprot,1414 uniprot,1428 uniprot,1431 uniprot,1462 uniprot,1508 uniprot,1512 uniprot,1519 uniprot,1522 uniprot,1527 uniprot,1535 uniprot,1547 uniprot,1574 uniprot,1582 uniprot,1588 uniprot,1592 uniprot,1595 uniprot,1606 uniprot,1609 uniprot,1612 uniprot,1618 uniprot,1621 uniprot,1628 uniprot,1640 uniprot,1664 uniprot,1667 uniprot,1678 uniprot,1681 uniprot,1701 uniprot,1707 uniprot,1711 uniprot,1719 uniprot,1723 uniprot,1729 uniprot,1743 uniprot,1746 uniprot,1753 uniprot,1773 uniprot,1796 uniprot,1857 uniprot,1861 uniprot,1893 uniprot,1963 uniprot,1988 uniprot,1992 uniprot,2024 uniprot,2029 windowmaskerSdust,22 windowmaskerSdust,28 windowmaskerSdust,32 windowmaskerSdust,36 windowmaskerSdust,42 windowmaskerSdust,55 windowmaskerSdust,74 windowmaskerSdust,81 xenoRefGene,26 xenoRefGene,33 xenoRefGene,48 xenoRefGene,55 xenoRefGene,59 xenoRefGene,63 xenoRefGene,74 xenoRefGene,89 xenoRefGene,92 xenoRefGene,95 xenoRefGene,109 xenoRefGene,115 xenoRefGene,120 xenoRefGene,125 xenoRefGene,133 xenoRefGene,161 xenoRefGene,166 xenoRefGene,181 xenoRefGene,196 xenoRefGene,209 xenoRefGene,216 xenoRefGene,221 xenoRefGene,244 xenoRefGene,247 xenoRefGene,263 xenoRefGene,272 xenoRefGene,295 their nestedRepeats,190 uniprot,62 uniprot,723 uniprot,1101 them chainNeoSch1,815 chainNetNeoSch1,818 chainNetRn6,803 chainRn6,800 cpgIslandExt,126 cpgIslandExtUnmasked,129 cpgIslandSuper,126 netNeoSch1,815 netRn6,800 rmsk,318 uniprot,20 uniprot,173 uniprot,483 then chainNeoSch1,665 chainNeoSch1,804 chainNeoSch1,889 chainNetNeoSch1,668 chainNetNeoSch1,807 chainNetNeoSch1,892 chainNetRn6,653 chainNetRn6,792 chainNetRn6,877 chainRn6,650 chainRn6,789 chainRn6,874 cpgIslandExt,256 cpgIslandExtUnmasked,259 cpgIslandSuper,256 nestedRepeats,232 netNeoSch1,665 netNeoSch1,804 netNeoSch1,889 netRn6,650 netRn6,789 netRn6,874 transMapV5,129 uniprot,1083 uniprot,1516 there cpgIslandExt,120 cpgIslandExtUnmasked,123 cpgIslandSuper,120 est,619 intronEst,700 transMapEnsemblV5,450 transMapEstV5,419 transMapRefSeqV5,419 transMapRnaV5,419 transMapV5,525 uniprot,705 uniprot,1092 therefore gold,122 uniprot,968 uniprot,1145 these augustusGene,95 augustusGene,190 chainNeoSch1,56 chainNeoSch1,108 chainNeoSch1,421 chainNeoSch1,677 chainNetNeoSch1,59 chainNetNeoSch1,111 chainNetNeoSch1,424 chainNetNeoSch1,680 chainNetRn6,56 chainNetRn6,105 chainNetRn6,413 chainNetRn6,665 chainRn6,53 chainRn6,102 chainRn6,410 chainRn6,662 ensGene,10 ensGene,154 est,587 intronEst,668 microsat,24 nestedRepeats,262 nestedRepeats,266 netNeoSch1,56 netNeoSch1,108 netNeoSch1,421 netNeoSch1,677 netRn6,53 netRn6,102 netRn6,410 netRn6,662 rmsk,235 simpleRepeat,33 transMapEnsemblV5,457 transMapEnsemblV5,466 transMapEnsemblV5,521 transMapEnsemblV5,582 transMapEstV5,426 transMapEstV5,435 transMapEstV5,490 transMapEstV5,551 transMapRefSeqV5,426 transMapRefSeqV5,435 transMapRefSeqV5,490 transMapRefSeqV5,551 transMapRnaV5,426 transMapRnaV5,435 transMapRnaV5,490 transMapRnaV5,551 transMapV5,12 transMapV5,532 transMapV5,541 transMapV5,596 transMapV5,657 uniprot,99 uniprot,130 uniprot,1160 thesis chainNeoSch1,1035 chainNetNeoSch1,1038 chainNetRn6,1023 chainRn6,1020 netNeoSch1,1035 netRn6,1020 they chainNeoSch1,338 chainNetNeoSch1,341 chainNetRn6,330 chainRn6,327 netNeoSch1,338 netRn6,327 uniprot,179 thibaud-nissen refGene,358 xenoRefGene,323 thick chainNeoSch1,47 chainNetNeoSch1,50 chainNetRn6,47 chainRn6,44 netNeoSch1,47 netRn6,44 this augustusGene,13 augustusGene,106 augustusGene,224 chainNeoSch1,17 chainNeoSch1,180 chainNeoSch1,309 chainNeoSch1,408 chainNeoSch1,708 chainNeoSch1,830 chainNetNeoSch1,20 chainNetNeoSch1,183 chainNetNeoSch1,312 chainNetNeoSch1,411 chainNetNeoSch1,711 chainNetNeoSch1,833 chainNetRn6,17 chainNetRn6,175 chainNetRn6,300 chainNetRn6,400 chainNetRn6,696 chainNetRn6,818 chainRn6,14 chainRn6,172 chainRn6,297 chainRn6,397 chainRn6,693 chainRn6,815 cpgIslandExt,72 cpgIslandExt,222 cpgIslandExt,585 cpgIslandExtUnmasked,75 cpgIslandExtUnmasked,225 cpgIslandExtUnmasked,588 cpgIslandSuper,72 cpgIslandSuper,222 cpgIslandSuper,585 ensGene,119 ensGene,135 est,11 est,47 est,112 est,139 est,375 est,412 est,592 est,628 est,641 est,722 gap,8 gap,36 gap,44 gap,74 gap,115 gc5BaseBw,38 gc5BaseBw,77 genscan,11 genscan,65 genscan,128 gold,9 gold,38 gold,43 gold,69 gold,139 intronEst,13 intronEst,131 intronEst,193 intronEst,220 intronEst,456 intronEst,493 intronEst,673 intronEst,709 intronEst,722 intronEst,803 intronEst,806 microsat,11 microsat,50 microsat,99 mrna,28 mrna,58 mrna,85 mrna,321 mrna,349 nestedRepeats,15 nestedRepeats,79 nestedRepeats,321 netNeoSch1,17 netNeoSch1,180 netNeoSch1,309 netNeoSch1,408 netNeoSch1,708 netNeoSch1,830 netRn6,14 netRn6,172 netRn6,297 netRn6,397 netRn6,693 netRn6,815 refGene,33 refGene,79 refGene,117 refGene,172 refGene,211 refGene,247 refGene,312 rmsk,10 rmsk,51 rmsk,143 rmsk,344 simpleRepeat,12 simpleRepeat,31 transMapEnsemblV5,15 transMapEnsemblV5,95 transMapEnsemblV5,105 transMapEnsemblV5,133 transMapEnsemblV5,286 transMapEnsemblV5,674 transMapEstV5,13 transMapEstV5,64 transMapEstV5,74 transMapEstV5,102 transMapEstV5,255 transMapEstV5,643 transMapRefSeqV5,14 transMapRefSeqV5,64 transMapRefSeqV5,74 transMapRefSeqV5,102 transMapRefSeqV5,255 transMapRefSeqV5,643 transMapRnaV5,14 transMapRnaV5,64 transMapRnaV5,74 transMapRnaV5,102 transMapRnaV5,255 transMapRnaV5,643 transMapV5,170 transMapV5,180 transMapV5,208 transMapV5,361 transMapV5,749 ucscToINSDC,14 ucscToINSDC,46 uniprot,12 uniprot,134 uniprot,149 uniprot,218 uniprot,220 uniprot,653 uniprot,663 uniprot,871 uniprot,878 uniprot,1018 uniprot,1058 uniprot,1063 uniprot,1248 uniprot,1259 uniprot,1352 uniprot,1447 uniprot,1530 uniprot,1553 uniprot,1562 uniprot,1657 uniprot,1674 uniprot,1688 uniprot,1939 windowmaskerSdust,13 windowmaskerSdust,49 windowmaskerSdust,87 xenoRefGene,11 xenoRefGene,36 xenoRefGene,45 xenoRefGene,83 xenoRefGene,138 xenoRefGene,177 xenoRefGene,213 xenoRefGene,278 those est,368 est,401 intronEst,449 intronEst,482 microsat,62 mrna,314 nestedRepeats,272 refGene,260 uniprot,729 xenoRefGene,226 thousands chainNeoSch1,260 chainNetNeoSch1,263 chainNetRn6,255 chainRn6,252 netNeoSch1,260 netRn6,252 three uniprot,1227 three-step uniprot,989 through gap,108 nestedRepeats,97 refGene,122 rmsk,309 transMapEnsemblV5,527 transMapEstV5,496 transMapRefSeqV5,496 transMapRnaV5,496 transMapV5,602 uniprot,98 uniprot,133 uniprot,633 uniprot,804 uniprot,1521 xenoRefGene,88 time chainNeoSch1,813 chainNetNeoSch1,816 chainNetRn6,801 chainRn6,798 cpgIslandExt,99 cpgIslandExt,237 cpgIslandExtUnmasked,102 cpgIslandExtUnmasked,240 cpgIslandSuper,99 cpgIslandSuper,237 netNeoSch1,813 netRn6,798 tissue est,204 est,239 est,254 intronEst,285 intronEst,320 intronEst,335 mrna,150 mrna,185 mrna,200 tissues est,247 intronEst,328 mrna,193 to augustusGene,115 augustusGene,170 augustusGene,249 augustusGene,301 chainNeoSch1,27 chainNeoSch1,76 chainNeoSch1,151 chainNeoSch1,221 chainNeoSch1,233 chainNeoSch1,329 chainNeoSch1,340 chainNeoSch1,345 chainNeoSch1,357 chainNeoSch1,363 chainNeoSch1,386 chainNeoSch1,467 chainNeoSch1,481 chainNeoSch1,565 chainNeoSch1,670 chainNeoSch1,806 chainNeoSch1,818 chainNeoSch1,858 chainNeoSch1,881 chainNeoSch1,891 chainNetNeoSch1,30 chainNetNeoSch1,79 chainNetNeoSch1,154 chainNetNeoSch1,224 chainNetNeoSch1,236 chainNetNeoSch1,332 chainNetNeoSch1,343 chainNetNeoSch1,348 chainNetNeoSch1,360 chainNetNeoSch1,366 chainNetNeoSch1,389 chainNetNeoSch1,470 chainNetNeoSch1,484 chainNetNeoSch1,568 chainNetNeoSch1,673 chainNetNeoSch1,809 chainNetNeoSch1,821 chainNetNeoSch1,861 chainNetNeoSch1,884 chainNetNeoSch1,894 chainNetRn6,27 chainNetRn6,75 chainNetRn6,148 chainNetRn6,216 chainNetRn6,228 chainNetRn6,321 chainNetRn6,332 chainNetRn6,337 chainNetRn6,349 chainNetRn6,355 chainNetRn6,378 chainNetRn6,459 chainNetRn6,473 chainNetRn6,557 chainNetRn6,658 chainNetRn6,794 chainNetRn6,806 chainNetRn6,846 chainNetRn6,869 chainNetRn6,879 chainRn6,24 chainRn6,72 chainRn6,145 chainRn6,213 chainRn6,225 chainRn6,318 chainRn6,329 chainRn6,334 chainRn6,346 chainRn6,352 chainRn6,375 chainRn6,456 chainRn6,470 chainRn6,554 chainRn6,655 chainRn6,791 chainRn6,803 chainRn6,843 chainRn6,866 chainRn6,876 cpgIslandExt,69 cpgIslandExt,103 cpgIslandExt,124 cpgIslandExt,139 cpgIslandExt,205 cpgIslandExt,283 cpgIslandExt,358 cpgIslandExt,365 cpgIslandExt,371 cpgIslandExtUnmasked,72 cpgIslandExtUnmasked,106 cpgIslandExtUnmasked,127 cpgIslandExtUnmasked,142 cpgIslandExtUnmasked,208 cpgIslandExtUnmasked,286 cpgIslandExtUnmasked,361 cpgIslandExtUnmasked,368 cpgIslandExtUnmasked,374 cpgIslandSuper,69 cpgIslandSuper,103 cpgIslandSuper,124 cpgIslandSuper,139 cpgIslandSuper,205 cpgIslandSuper,283 cpgIslandSuper,358 cpgIslandSuper,365 cpgIslandSuper,371 ensGene,43 ensGene,149 est,94 est,121 est,158 est,162 est,177 est,184 est,188 est,206 est,226 est,233 est,332 est,381 est,391 est,415 est,436 est,445 est,514 est,579 est,639 est,733 gc5BaseBw,48 genscan,95 genscan,105 genscan,114 genscan,145 genscan,171 gold,131 intronEst,55 intronEst,175 intronEst,202 intronEst,239 intronEst,243 intronEst,258 intronEst,265 intronEst,269 intronEst,287 intronEst,307 intronEst,314 intronEst,413 intronEst,462 intronEst,472 intronEst,496 intronEst,517 intronEst,526 intronEst,595 intronEst,660 intronEst,720 intronEst,817 microsat,18 microsat,38 microsat,121 mrna,67 mrna,104 mrna,108 mrna,123 mrna,130 mrna,134 mrna,152 mrna,172 mrna,179 mrna,278 mrna,327 mrna,337 mrna,352 mrna,375 mrna,450 nestedRepeats,148 nestedRepeats,152 nestedRepeats,174 nestedRepeats,184 nestedRepeats,200 nestedRepeats,225 nestedRepeats,234 nestedRepeats,260 nestedRepeats,304 nestedRepeats,319 netNeoSch1,27 netNeoSch1,76 netNeoSch1,151 netNeoSch1,221 netNeoSch1,233 netNeoSch1,329 netNeoSch1,340 netNeoSch1,345 netNeoSch1,357 netNeoSch1,363 netNeoSch1,386 netNeoSch1,467 netNeoSch1,481 netNeoSch1,565 netNeoSch1,670 netNeoSch1,806 netNeoSch1,818 netNeoSch1,858 netNeoSch1,881 netNeoSch1,891 netRn6,24 netRn6,72 netRn6,145 netRn6,213 netRn6,225 netRn6,318 netRn6,329 netRn6,334 netRn6,346 netRn6,352 netRn6,375 netRn6,456 netRn6,470 netRn6,554 netRn6,655 netRn6,791 netRn6,803 netRn6,843 netRn6,866 netRn6,876 refGene,49 refGene,147 refGene,183 refGene,190 refGene,214 refGene,240 rmsk,147 rmsk,315 rmsk,327 rmsk,342 simpleRepeat,81 transMapEnsemblV5,111 transMapEnsemblV5,121 transMapEnsemblV5,177 transMapEnsemblV5,200 transMapEnsemblV5,258 transMapEnsemblV5,291 transMapEnsemblV5,299 transMapEnsemblV5,316 transMapEnsemblV5,330 transMapEnsemblV5,342 transMapEnsemblV5,381 transMapEnsemblV5,426 transMapEnsemblV5,436 transMapEnsemblV5,469 transMapEnsemblV5,475 transMapEnsemblV5,488 transMapEnsemblV5,648 transMapEnsemblV5,690 transMapEnsemblV5,769 transMapEstV5,80 transMapEstV5,90 transMapEstV5,146 transMapEstV5,169 transMapEstV5,227 transMapEstV5,260 transMapEstV5,268 transMapEstV5,285 transMapEstV5,299 transMapEstV5,311 transMapEstV5,350 transMapEstV5,395 transMapEstV5,405 transMapEstV5,438 transMapEstV5,444 transMapEstV5,457 transMapEstV5,617 transMapEstV5,659 transMapEstV5,738 transMapRefSeqV5,80 transMapRefSeqV5,90 transMapRefSeqV5,146 transMapRefSeqV5,169 transMapRefSeqV5,227 transMapRefSeqV5,260 transMapRefSeqV5,268 transMapRefSeqV5,285 transMapRefSeqV5,299 transMapRefSeqV5,311 transMapRefSeqV5,350 transMapRefSeqV5,395 transMapRefSeqV5,405 transMapRefSeqV5,438 transMapRefSeqV5,444 transMapRefSeqV5,457 transMapRefSeqV5,617 transMapRefSeqV5,659 transMapRefSeqV5,738 transMapRnaV5,80 transMapRnaV5,90 transMapRnaV5,146 transMapRnaV5,169 transMapRnaV5,227 transMapRnaV5,260 transMapRnaV5,268 transMapRnaV5,285 transMapRnaV5,299 transMapRnaV5,311 transMapRnaV5,350 transMapRnaV5,395 transMapRnaV5,405 transMapRnaV5,438 transMapRnaV5,444 transMapRnaV5,457 transMapRnaV5,617 transMapRnaV5,659 transMapRnaV5,738 transMapV5,79 transMapV5,89 transMapV5,120 transMapV5,131 transMapV5,154 transMapV5,186 transMapV5,196 transMapV5,252 transMapV5,275 transMapV5,333 transMapV5,366 transMapV5,374 transMapV5,391 transMapV5,405 transMapV5,417 transMapV5,456 transMapV5,501 transMapV5,511 transMapV5,544 transMapV5,550 transMapV5,563 transMapV5,723 transMapV5,765 transMapV5,844 ucscToINSDC,22 unipAliSwissprot,8 unipAliTrembl,8 uniprot,27 uniprot,86 uniprot,101 uniprot,118 uniprot,201 uniprot,214 uniprot,226 uniprot,245 uniprot,492 uniprot,525 uniprot,552 uniprot,559 uniprot,658 uniprot,682 uniprot,764 uniprot,784 uniprot,801 uniprot,849 uniprot,917 uniprot,920 uniprot,955 uniprot,974 uniprot,1008 uniprot,1088 uniprot,1196 uniprot,1215 uniprot,1220 uniprot,1247 uniprot,1285 uniprot,1336 uniprot,1356 uniprot,1369 uniprot,1405 uniprot,1413 uniprot,1460 uniprot,1473 uniprot,1478 uniprot,1493 uniprot,1518 uniprot,1551 uniprot,1676 uniprot,1761 uniprot,1802 uniprot,1828 uniprot,1846 uniprot,1851 uniprot,1856 uniprot,1884 uniprot,1890 uniprot,1975 windowmaskerSdust,47 xenoRefGene,113 xenoRefGene,149 xenoRefGene,156 xenoRefGene,180 xenoRefGene,206 together chainNeoSch1,131 chainNetNeoSch1,134 chainNetRn6,128 chainRn6,125 netNeoSch1,131 netRn6,125 tolerate chainNeoSch1,98 chainNetNeoSch1,101 chainNetRn6,97 chainRn6,94 netNeoSch1,98 netRn6,94 tolerated uniprot,1257 tool est,803 intronEst,887 mrna,520 refGene,340 transMapEnsemblV5,612 transMapEnsemblV5,643 transMapEstV5,581 transMapEstV5,612 transMapRefSeqV5,581 transMapRefSeqV5,612 transMapRnaV5,581 transMapRnaV5,612 transMapV5,687 transMapV5,718 uniprot,1766 uniprot,1797 windowmaskerSdust,24 xenoRefGene,305 toolkit windowmaskerSdust,31 windowmaskerSdust,38 tools nestedRepeats,314 rmsk,337 uniprot,1873 top chainNeoSch1,522 chainNetNeoSch1,525 chainNetRn6,514 chainRn6,511 cpgIslandExt,220 cpgIslandExtUnmasked,223 cpgIslandSuper,220 netNeoSch1,522 netRn6,511 refGene,127 uniprot,1304 uniprot,1340 uniprot,1489 xenoRefGene,93 top-level chainNeoSch1,397 chainNeoSch1,417 chainNetNeoSch1,400 chainNetNeoSch1,420 chainNetRn6,389 chainNetRn6,409 chainRn6,386 chainRn6,406 netNeoSch1,397 netNeoSch1,417 netRn6,386 netRn6,406 top-scoring uniprot,792 topological uniprot,330 track augustusGene,14 augustusGene,107 chainNeoSch1,18 chainNeoSch1,62 chainNeoSch1,65 chainNeoSch1,127 chainNeoSch1,269 chainNeoSch1,272 chainNeoSch1,324 chainNeoSch1,359 chainNeoSch1,391 chainNeoSch1,578 chainNeoSch1,709 chainNeoSch1,772 chainNetNeoSch1,21 chainNetNeoSch1,65 chainNetNeoSch1,68 chainNetNeoSch1,130 chainNetNeoSch1,272 chainNetNeoSch1,275 chainNetNeoSch1,327 chainNetNeoSch1,362 chainNetNeoSch1,394 chainNetNeoSch1,581 chainNetNeoSch1,712 chainNetNeoSch1,775 chainNetRn6,18 chainNetRn6,62 chainNetRn6,65 chainNetRn6,124 chainNetRn6,264 chainNetRn6,267 chainNetRn6,316 chainNetRn6,351 chainNetRn6,383 chainNetRn6,570 chainNetRn6,697 chainNetRn6,760 chainRn6,15 chainRn6,59 chainRn6,62 chainRn6,121 chainRn6,261 chainRn6,264 chainRn6,313 chainRn6,348 chainRn6,380 chainRn6,567 chainRn6,694 chainRn6,757 cpgIslandExt,173 cpgIslandExt,202 cpgIslandExt,216 cpgIslandExt,314 cpgIslandExt,318 cpgIslandExt,402 cpgIslandExt,492 cpgIslandExt,586 cpgIslandExtUnmasked,176 cpgIslandExtUnmasked,205 cpgIslandExtUnmasked,219 cpgIslandExtUnmasked,317 cpgIslandExtUnmasked,321 cpgIslandExtUnmasked,405 cpgIslandExtUnmasked,495 cpgIslandExtUnmasked,589 cpgIslandSuper,173 cpgIslandSuper,202 cpgIslandSuper,216 cpgIslandSuper,314 cpgIslandSuper,318 cpgIslandSuper,402 cpgIslandSuper,492 cpgIslandSuper,586 ensGene,136 est,12 est,48 est,113 est,138 est,150 est,376 est,642 est,723 gap,9 gap,75 gc5BaseBw,15 gc5BaseBw,39 genscan,12 genscan,66 genscan,76 genscan,87 gold,10 gold,70 gold,140 intronEst,14 intronEst,126 intronEst,132 intronEst,194 intronEst,219 intronEst,231 intronEst,457 intronEst,723 intronEst,804 intronEst,807 microsat,12 microsat,51 microsat,59 microsat,87 mrna,13 mrna,29 mrna,59 mrna,84 mrna,96 mrna,322 mrna,440 nestedRepeats,16 nestedRepeats,78 nestedRepeats,80 nestedRepeats,322 netNeoSch1,18 netNeoSch1,62 netNeoSch1,65 netNeoSch1,127 netNeoSch1,269 netNeoSch1,272 netNeoSch1,324 netNeoSch1,359 netNeoSch1,391 netNeoSch1,578 netNeoSch1,709 netNeoSch1,772 netRn6,15 netRn6,59 netRn6,62 netRn6,121 netRn6,261 netRn6,264 netRn6,313 netRn6,348 netRn6,380 netRn6,567 netRn6,694 netRn6,757 refGene,13 refGene,34 refGene,80 refGene,118 refGene,130 refGene,173 refGene,202 refGene,313 rmsk,11 rmsk,52 rmsk,144 rmsk,345 simpleRepeat,13 transMapEnsemblV5,16 transMapEnsemblV5,96 transMapEnsemblV5,106 transMapEnsemblV5,231 transMapEnsemblV5,569 transMapEnsemblV5,573 transMapEnsemblV5,675 transMapEstV5,14 transMapEstV5,65 transMapEstV5,75 transMapEstV5,200 transMapEstV5,538 transMapEstV5,542 transMapEstV5,644 transMapRefSeqV5,15 transMapRefSeqV5,65 transMapRefSeqV5,75 transMapRefSeqV5,200 transMapRefSeqV5,538 transMapRefSeqV5,542 transMapRefSeqV5,644 transMapRnaV5,15 transMapRnaV5,65 transMapRnaV5,75 transMapRnaV5,200 transMapRnaV5,538 transMapRnaV5,542 transMapRnaV5,644 transMapV5,101 transMapV5,171 transMapV5,181 transMapV5,306 transMapV5,644 transMapV5,648 transMapV5,750 ucscToINSDC,15 ucscToINSDC,47 uniprot,13 uniprot,104 uniprot,150 uniprot,219 uniprot,221 uniprot,234 uniprot,422 uniprot,429 uniprot,576 uniprot,654 uniprot,710 uniprot,1004 uniprot,1208 uniprot,1277 uniprot,1554 uniprot,1563 uniprot,1583 uniprot,1658 uniprot,1671 uniprot,1689 uniprot,1713 uniprot,1754 uniprot,1940 windowmaskerSdust,14 windowmaskerSdust,50 windowmaskerSdust,88 xenoRefGene,12 xenoRefGene,37 xenoRefGene,46 xenoRefGene,84 xenoRefGene,96 xenoRefGene,139 xenoRefGene,168 xenoRefGene,279 tracks augustusGene,41 chainNeoSch1,786 chainNetNeoSch1,789 chainNetRn6,774 chainRn6,771 ensGene,24 est,56 est,421 genscan,56 genscan,74 intronEst,140 intronEst,502 mrna,37 mrna,360 netNeoSch1,786 netRn6,771 refGene,70 refGene,88 transMapEnsemblV5,104 transMapEnsemblV5,522 transMapEnsemblV5,583 transMapEstV5,73 transMapEstV5,491 transMapEstV5,552 transMapRefSeqV5,73 transMapRefSeqV5,491 transMapRefSeqV5,552 transMapRnaV5,73 transMapRnaV5,491 transMapRnaV5,552 transMapV5,13 transMapV5,179 transMapV5,597 transMapV5,658 uniprot,91 uniprot,123 uniprot,206 uniprot,409 uniprot,1643 xenoRefGene,54 traditional chainNeoSch1,90 chainNetNeoSch1,93 chainNetRn6,89 chainRn6,86 netNeoSch1,90 netRn6,86 trained augustusGene,150 training augustusGene,162 augustusGene,176 augustusGene,180 augustusGene,199 augustusGene,228 augustusGene,243 augustusGene,259 augustusGene,273 transcribed est,41 est,456 intronEst,53 intronEst,537 transcript est,551 intronEst,632 transMapEnsemblV5,153 transMapEnsemblV5,324 transMapEnsemblV5,377 transMapEstV5,122 transMapEstV5,293 transMapEstV5,346 transMapRefSeqV5,122 transMapRefSeqV5,293 transMapRefSeqV5,346 transMapRnaV5,122 transMapRnaV5,293 transMapRnaV5,346 transMapV5,228 transMapV5,399 transMapV5,452 uniprot,837 uniprot,908 uniprot,918 uniprot,945 uniprot,963 uniprot,1003 uniprot,1076 uniprot,1223 uniprot,1237 uniprot,1249 uniprot,1263 uniprot,1268 uniprot,1291 uniprot,1325 uniprot,1596 uniprot,1610 uniprot,1623 transcript-genome uniprot,813 uniprot,1619 transcript-to-genome uniprot,806 transcriptase est,507 intronEst,588 transcription cpgIslandExt,32 cpgIslandExtUnmasked,35 cpgIslandSuper,32 est,98 est,490 est,537 est,559 intronEst,179 intronEst,571 intronEst,618 intronEst,640 transcriptional genscan,28 transcripts augustusGene,124 refGene,411 transMapEnsemblV5,341 transMapEstV5,310 transMapRefSeqV5,310 transMapRnaV5,310 transMapV5,416 uniprot,786 uniprot,833 uniprot,928 uniprot,936 uniprot,957 uniprot,985 uniprot,992 uniprot,1011 uniprot,1022 uniprot,1032 uniprot,1056 uniprot,1069 uniprot,1091 uniprot,1096 uniprot,1108 uniprot,1127 uniprot,1168 uniprot,1338 uniprot,1474 xenoRefGene,376 translated transMapV5,155 translation augustusGene,57 translational genscan,29 transmap transMapEnsemblV5,1 transMapEnsemblV5,3 transMapEnsemblV5,25 transMapEnsemblV5,440 transMapEnsemblV5,499 transMapEnsemblV5,588 transMapEnsemblV5,591 transMapEnsemblV5,594 transMapEnsemblV5,597 transMapEnsemblV5,663 transMapEstV5,1 transMapEstV5,3 transMapEstV5,23 transMapEstV5,409 transMapEstV5,468 transMapEstV5,557 transMapEstV5,560 transMapEstV5,563 transMapEstV5,566 transMapEstV5,632 transMapRefSeqV5,1 transMapRefSeqV5,3 transMapRefSeqV5,23 transMapRefSeqV5,409 transMapRefSeqV5,468 transMapRefSeqV5,557 transMapRefSeqV5,560 transMapRefSeqV5,563 transMapRefSeqV5,566 transMapRefSeqV5,632 transMapRnaV5,1 transMapRnaV5,3 transMapRnaV5,23 transMapRnaV5,409 transMapRnaV5,468 transMapRnaV5,557 transMapRnaV5,560 transMapRnaV5,563 transMapRnaV5,566 transMapRnaV5,632 transMapV5,1 transMapV5,3 transMapV5,22 transMapV5,70 transMapV5,100 transMapV5,157 transMapV5,515 transMapV5,574 transMapV5,663 transMapV5,666 transMapV5,669 transMapV5,672 transMapV5,738 transmembrane unipLocTransMemb,1 unipLocTransMemb,3 uniprot,265 uniprot,273 uniprot,515 uniprot,567 transposable nestedRepeats,379 rmsk,402 transposons chainNeoSch1,579 chainNeoSch1,605 chainNeoSch1,916 chainNetNeoSch1,582 chainNetNeoSch1,608 chainNetNeoSch1,919 chainNetRn6,571 chainNetRn6,595 chainNetRn6,904 chainRn6,568 chainRn6,592 chainRn6,901 netNeoSch1,579 netNeoSch1,605 netNeoSch1,916 netRn6,568 netRn6,592 netRn6,901 trembl unipAliTrembl,1 unipAliTrembl,6 uniprot,4 uniprot,44 uniprot,79 uniprot,185 uniprot,192 uniprot,199 uniprot,211 uniprot,500 uniprot,604 uniprot,661 trends nestedRepeats,353 rmsk,376 trf simpleRepeat,7 simpleRepeat,26 simpleRepeat,61 simpleRepeat,67 tri-nucleotide microsat,5 microsat,34 tried uniprot,869 trimming chainNeoSch1,814 chainNetNeoSch1,817 chainNetRn6,802 chainRn6,799 netNeoSch1,814 netRn6,799 trna rmsk,190 true augustusGene,132 windowmaskerSdust,60 windowmaskerSdust,69 ts cpgIslandExt,106 cpgIslandExtUnmasked,109 cpgIslandSuper,106 turn chainNeoSch1,346 chainNetNeoSch1,349 chainNetRn6,338 chainRn6,335 cpgIslandExt,104 cpgIslandExtUnmasked,107 cpgIslandSuper,104 netNeoSch1,346 netRn6,335 refGene,165 xenoRefGene,131 turns uniprot,370 twice cpgIslandExt,354 cpgIslandExtUnmasked,357 cpgIslandSuper,354 two chainNeoSch1,922 chainNetNeoSch1,925 chainNetRn6,910 chainRn6,907 netNeoSch1,922 netRn6,907 transMapEnsemblV5,452 transMapEnsemblV5,489 transMapEstV5,421 transMapEstV5,458 transMapRefSeqV5,421 transMapRefSeqV5,458 transMapRnaV5,421 transMapRnaV5,458 transMapV5,527 transMapV5,564 uniprot,71 uniprot,630 uniprot,1641 twobittofa cpgIslandExt,411 cpgIslandExt,497 cpgIslandExt,502 cpgIslandExtUnmasked,414 cpgIslandExtUnmasked,500 cpgIslandExtUnmasked,505 cpgIslandSuper,411 cpgIslandSuper,497 cpgIslandSuper,502 type est,166 est,196 gold,145 intronEst,247 intronEst,277 mrna,112 mrna,142 uniprot,65 uniprot,271 uniprot,464 uniprot,614 types augustusGene,89 chainNeoSch1,518 chainNetNeoSch1,521 chainNetRn6,510 chainRn6,507 est,245 est,424 gap,121 gold,136 intronEst,326 intronEst,505 mrna,191 mrna,363 netNeoSch1,518 netRn6,507 transMapEnsemblV5,138 transMapEstV5,107 transMapRefSeqV5,107 transMapRnaV5,107 transMapV5,213 uniprot,676 typical cpgIslandExt,161 cpgIslandExtUnmasked,164 cpgIslandSuper,161 typically cpgIslandExt,29 cpgIslandExtUnmasked,32 cpgIslandSuper,29 est,30 est,459 gc5BaseBw,33 intronEst,42 intronEst,540 u chainNeoSch1,1085 chainNetNeoSch1,1088 chainNetRn6,1073 chainRn6,1070 netNeoSch1,1085 netRn6,1070 ucsc est,727 intronEst,811 mrna,444 nestedRepeats,245 refGene,317 transMapEnsemblV5,35 transMapEnsemblV5,162 transMapEnsemblV5,183 transMapEnsemblV5,682 transMapEstV5,33 transMapEstV5,131 transMapEstV5,152 transMapEstV5,651 transMapRefSeqV5,33 transMapRefSeqV5,131 transMapRefSeqV5,152 transMapRefSeqV5,651 transMapRnaV5,33 transMapRnaV5,131 transMapRnaV5,152 transMapRnaV5,651 transMapV5,32 transMapV5,237 transMapV5,258 transMapV5,757 ucscToINSDC,17 unipAliSwissprot,3 unipAliTrembl,3 uniprot,107 uniprot,190 uniprot,773 uniprot,826 uniprot,827 uniprot,844 uniprot,1206 uniprot,1275 uniprot,1668 uniprot,1947 xenoRefGene,283 undergone refGene,101 xenoRefGene,67 underlies genscan,142 underlying refGene,32 uniprot,1682 xenoRefGene,35 underneath chainNeoSch1,850 chainNetNeoSch1,853 chainNetRn6,838 chainRn6,835 netNeoSch1,850 netRn6,835 unexpected uniprot,766 ungapped chainNeoSch1,457 chainNetNeoSch1,460 chainNetRn6,449 chainRn6,446 netNeoSch1,457 netRn6,446 uniprot unipChain,2 unipConflict,3 unipDisulfBond,3 unipDomain,2 unipInterest,2 unipLocCytopl,2 unipLocExtra,2 unipLocSignal,3 unipLocTransMemb,2 unipModif,3 unipMut,2 unipOther,3 unipRepeat,2 unipStruct,2 uniprot,1 uniprot,2 uniprot,23 uniprot,30 uniprot,41 uniprot,43 uniprot,68 uniprot,152 uniprot,237 uniprot,253 uniprot,264 uniprot,275 uniprot,286 uniprot,296 uniprot,322 uniprot,332 uniprot,337 uniprot,349 uniprot,358 uniprot,371 uniprot,380 uniprot,382 uniprot,392 uniprot,413 uniprot,424 uniprot,453 uniprot,494 uniprot,529 uniprot,544 uniprot,573 uniprot,669 uniprot,714 uniprot,721 uniprot,738 uniprot,750 uniprot,779 uniprot,924 uniprot,996 uniprot,1016 uniprot,1029 uniprot,1231 uniprot,1437 uniprot,1503 uniprot,1509 uniprot,1513 uniprot,1591 uniprot,1669 uniprot,1702 uniprot,1817 uniprot,1845 uniprot,1910 uniprot,1964 uniprot,1976 uniprot,1985 uniprot,1996 uniprot-annotated uniprot,1279 unipstruct.bb uniprot,1818 uniptogenome.over.chain.gz uniprot,1896 uniprot,1912 uniprot,1934 uniptogenomelift.psl.gz uniprot,1899 unique transMapEnsemblV5,383 transMapEnsemblV5,394 transMapEnsemblV5,431 transMapEnsemblV5,442 transMapEstV5,352 transMapEstV5,363 transMapEstV5,400 transMapEstV5,411 transMapRefSeqV5,352 transMapRefSeqV5,363 transMapRefSeqV5,400 transMapRefSeqV5,411 transMapRnaV5,352 transMapRnaV5,363 transMapRnaV5,400 transMapRnaV5,411 transMapV5,458 transMapV5,469 transMapV5,506 transMapV5,517 uniprot,1600 universal uniprot,1993 university chainNeoSch1,936 chainNeoSch1,970 chainNeoSch1,1016 chainNeoSch1,1039 chainNetNeoSch1,939 chainNetNeoSch1,973 chainNetNeoSch1,1019 chainNetNeoSch1,1042 chainNetRn6,924 chainNetRn6,958 chainNetRn6,1004 chainNetRn6,1027 chainRn6,921 chainRn6,955 chainRn6,1001 chainRn6,1024 netNeoSch1,936 netNeoSch1,970 netNeoSch1,1016 netNeoSch1,1039 netRn6,921 netRn6,955 netRn6,1001 netRn6,1024 unknown rmsk,203 unless cpgIslandExt,119 cpgIslandExtUnmasked,122 cpgIslandSuper,119 nestedRepeats,206 unmasked cpgIslandExt,169 cpgIslandExt,208 cpgIslandExt,315 cpgIslandExt,491 cpgIslandExtUnmasked,1 cpgIslandExtUnmasked,172 cpgIslandExtUnmasked,211 cpgIslandExtUnmasked,318 cpgIslandExtUnmasked,494 cpgIslandSuper,169 cpgIslandSuper,208 cpgIslandSuper,315 cpgIslandSuper,491 unprocessed chainNeoSch1,236 chainNetNeoSch1,239 chainNetRn6,231 chainRn6,228 est,602 intronEst,683 netNeoSch1,236 netRn6,228 unpublished cpgIslandExt,602 cpgIslandExtUnmasked,605 cpgIslandSuper,602 unsequenced chainNeoSch1,194 chainNetNeoSch1,197 chainNetRn6,189 chainRn6,186 netNeoSch1,194 netRn6,186 unspliced est,6 est,631 intronEst,121 intronEst,712 unsure rmsk,263 up gold,76 rmsk,146 update est,782 intronEst,866 mrna,499 nestedRepeats,46 nestedRepeats,58 nestedRepeats,336 nestedRepeats,343 refGene,376 rmsk,82 rmsk,94 rmsk,359 rmsk,366 xenoRefGene,341 updated refGene,36 uniprot,1566 xenoRefGene,39 us uniprot,687 uniprot,1441 use est,163 gold,87 intronEst,244 mrna,109 uniprot,991 uniprot,1021 uniprot,1073 uniprot,1225 used augustusGene,146 augustusGene,174 augustusGene,183 augustusGene,231 augustusGene,246 chainNeoSch1,307 chainNeoSch1,683 chainNeoSch1,714 chainNeoSch1,805 chainNeoSch1,857 chainNeoSch1,890 chainNetNeoSch1,310 chainNetNeoSch1,686 chainNetNeoSch1,717 chainNetNeoSch1,808 chainNetNeoSch1,860 chainNetNeoSch1,893 chainNetRn6,298 chainNetRn6,671 chainNetRn6,702 chainNetRn6,793 chainNetRn6,845 chainNetRn6,878 chainRn6,295 chainRn6,668 chainRn6,699 chainRn6,790 chainRn6,842 chainRn6,875 cpgIslandExt,308 cpgIslandExtUnmasked,311 cpgIslandSuper,308 ensGene,36 est,120 est,272 est,331 est,570 genscan,159 gold,14 intronEst,201 intronEst,353 intronEst,412 intronEst,651 mrna,66 mrna,218 mrna,277 nestedRepeats,247 nestedRepeats,292 nestedRepeats,318 netNeoSch1,307 netNeoSch1,683 netNeoSch1,714 netNeoSch1,805 netNeoSch1,857 netNeoSch1,890 netRn6,295 netRn6,668 netRn6,699 netRn6,790 netRn6,842 netRn6,875 rmsk,299 rmsk,341 transMapEnsemblV5,56 transMapEnsemblV5,64 transMapEnsemblV5,186 transMapEnsemblV5,238 transMapEnsemblV5,243 transMapEnsemblV5,263 transMapEnsemblV5,283 transMapEnsemblV5,315 transMapEnsemblV5,647 transMapEstV5,155 transMapEstV5,207 transMapEstV5,212 transMapEstV5,232 transMapEstV5,252 transMapEstV5,284 transMapEstV5,616 transMapRefSeqV5,155 transMapRefSeqV5,207 transMapRefSeqV5,212 transMapRefSeqV5,232 transMapRefSeqV5,252 transMapRefSeqV5,284 transMapRefSeqV5,616 transMapRnaV5,155 transMapRnaV5,207 transMapRnaV5,212 transMapRnaV5,232 transMapRnaV5,252 transMapRnaV5,284 transMapRnaV5,616 transMapV5,69 transMapV5,261 transMapV5,313 transMapV5,318 transMapV5,338 transMapV5,358 transMapV5,390 transMapV5,722 uniprot,1062 uniprot,1087 uniprot,1118 uniprot,1198 uniprot,1210 uniprot,1319 uniprot,1351 uniprot,1550 uniprot,1626 uniprot,1801 uniprot,1883 useful chainNeoSch1,290 chainNeoSch1,491 chainNetNeoSch1,293 chainNetNeoSch1,494 chainNetRn6,283 chainNetRn6,483 chainRn6,280 chainRn6,480 microsat,20 netNeoSch1,290 netNeoSch1,491 netRn6,280 netRn6,480 user est,390 intronEst,471 mrna,336 transMapEnsemblV5,120 transMapEstV5,89 transMapRefSeqV5,89 transMapRnaV5,89 transMapV5,195 users refGene,182 uniprot,406 uniprot,684 xenoRefGene,148 uses rmsk,79 using augustusGene,294 chainNeoSch1,80 chainNeoSch1,618 chainNeoSch1,779 chainNetNeoSch1,83 chainNetNeoSch1,621 chainNetNeoSch1,782 chainNetRn6,79 chainNetRn6,608 chainNetRn6,767 chainRn6,76 chainRn6,605 chainRn6,764 cpgIslandExt,516 cpgIslandExt,589 cpgIslandExtUnmasked,519 cpgIslandExtUnmasked,592 cpgIslandSuper,516 cpgIslandSuper,589 ensGene,64 est,652 intronEst,733 microsat,90 mrna,392 nestedRepeats,43 nestedRepeats,104 nestedRepeats,283 netNeoSch1,80 netNeoSch1,618 netNeoSch1,779 netRn6,76 netRn6,605 netRn6,764 refGene,258 rmsk,15 rmsk,290 transMapEnsemblV5,75 transMapEnsemblV5,561 transMapEnsemblV5,610 transMapEnsemblV5,762 transMapEstV5,44 transMapEstV5,530 transMapEstV5,579 transMapEstV5,731 transMapRefSeqV5,44 transMapRefSeqV5,530 transMapRefSeqV5,579 transMapRefSeqV5,731 transMapRnaV5,44 transMapRnaV5,530 transMapRnaV5,579 transMapRnaV5,731 transMapV5,43 transMapV5,81 transMapV5,124 transMapV5,135 transMapV5,142 transMapV5,636 transMapV5,685 transMapV5,837 uniprot,217 uniprot,722 uniprot,1526 xenoRefGene,224 ustat windowmaskerSdust,66 usually est,37 intronEst,49 nestedRepeats,192 transMapEnsemblV5,502 transMapEstV5,471 transMapRefSeqV5,471 transMapRnaV5,471 transMapV5,577 utils cpgIslandExt,565 cpgIslandExtUnmasked,568 cpgIslandSuper,565 utr transMapV5,164 v ensGene,185 v3.1 augustusGene,7 v4 transMapEnsemblV5,664 transMapEstV5,633 transMapRefSeqV5,633 transMapRnaV5,633 v5 transMapV5,2 transMapV5,739 valid est,211 intronEst,292 mrna,157 validate refGene,185 xenoRefGene,151 validation genscan,107 value est,282 intronEst,363 mrna,228 variant uniprot,2026 variants uniprot,357 uniprot,415 uniprot,425 uniprot,533 uniprot,943 uniprot,2042 variation microsat,7 nestedRepeats,11 rmsk,6 simpleRepeat,8 uniprot,438 windowmaskerSdust,9 variety gc5BaseBw,45 various uniprot,50 vb chainNeoSch1,1043 chainNetNeoSch1,1046 chainNetRn6,1031 chainRn6,1028 netNeoSch1,1043 netRn6,1028 vector est,467 intronEst,548 version augustusGene,23 augustusGene,263 cpgIslandExt,170 cpgIslandExt,193 cpgIslandExt,199 cpgIslandExt,209 cpgIslandExtUnmasked,173 cpgIslandExtUnmasked,196 cpgIslandExtUnmasked,202 cpgIslandExtUnmasked,212 cpgIslandSuper,170 cpgIslandSuper,193 cpgIslandSuper,199 cpgIslandSuper,209 rmsk,58 transMapEnsemblV5,8 transMapEstV5,6 transMapRefSeqV5,7 transMapRnaV5,7 transMapV5,5 uniprot,1254 uniprot,1297 uniprot,1576 uniprot,1593 versions augustusGene,279 ensGene,133 nestedRepeats,251 nestedRepeats,267 uniprot,1655 vertebrate cpgIslandExt,59 cpgIslandExt,611 cpgIslandExtUnmasked,62 cpgIslandExtUnmasked,614 cpgIslandSuper,59 cpgIslandSuper,611 transMapEnsemblV5,31 transMapEnsemblV5,158 transMapEnsemblV5,191 transMapEstV5,29 transMapEstV5,127 transMapEstV5,160 transMapRefSeqV5,29 transMapRefSeqV5,127 transMapRefSeqV5,160 transMapRnaV5,29 transMapRnaV5,127 transMapRnaV5,160 transMapV5,28 transMapV5,113 transMapV5,233 transMapV5,266 vertebrates augustusGene,209 cpgIslandExt,25 cpgIslandExtUnmasked,28 cpgIslandSuper,25 very est,673 intronEst,754 uniprot,977 uniprot,1185 uniprot,1399 uniprot,1402 via transMapEnsemblV5,326 transMapEstV5,295 transMapRefSeqV5,295 transMapRnaV5,295 transMapV5,401 uniprot,1293 view chainNeoSch1,468 chainNetNeoSch1,471 chainNetRn6,460 chainRn6,457 cpgIslandExt,206 cpgIslandExtUnmasked,209 cpgIslandSuper,206 est,207 intronEst,288 mrna,153 netNeoSch1,468 netRn6,457 viewed est,635 gold,79 intronEst,716 visibility cpgIslandExt,212 cpgIslandExtUnmasked,215 cpgIslandSuper,212 visible cpgIslandExt,188 cpgIslandExtUnmasked,191 cpgIslandSuper,188 uniprot,147 visit refGene,39 w chainNeoSch1,1045 chainNeoSch1,1065 chainNeoSch1,1113 chainNetNeoSch1,1048 chainNetNeoSch1,1068 chainNetNeoSch1,1116 chainNetRn6,1033 chainNetRn6,1053 chainNetRn6,1101 chainRn6,1030 chainRn6,1050 chainRn6,1098 gold,148 netNeoSch1,1045 netNeoSch1,1065 netNeoSch1,1113 netRn6,1030 netRn6,1050 netRn6,1098 waack augustusGene,318 want uniprot,690 was augustusGene,230 augustusGene,245 augustusGene,264 augustusGene,280 chainNeoSch1,664 chainNeoSch1,682 chainNeoSch1,803 chainNeoSch1,848 chainNeoSch1,856 chainNeoSch1,876 chainNeoSch1,888 chainNeoSch1,913 chainNeoSch1,931 chainNeoSch1,966 chainNetNeoSch1,667 chainNetNeoSch1,685 chainNetNeoSch1,806 chainNetNeoSch1,851 chainNetNeoSch1,859 chainNetNeoSch1,879 chainNetNeoSch1,891 chainNetNeoSch1,916 chainNetNeoSch1,934 chainNetNeoSch1,969 chainNetRn6,652 chainNetRn6,670 chainNetRn6,791 chainNetRn6,836 chainNetRn6,844 chainNetRn6,864 chainNetRn6,876 chainNetRn6,901 chainNetRn6,919 chainNetRn6,954 chainRn6,649 chainRn6,667 chainRn6,788 chainRn6,833 chainRn6,841 chainRn6,861 chainRn6,873 chainRn6,898 chainRn6,916 chainRn6,951 cpgIslandExt,255 cpgIslandExt,307 cpgIslandExt,587 cpgIslandExtUnmasked,258 cpgIslandExtUnmasked,310 cpgIslandExtUnmasked,590 cpgIslandSuper,255 cpgIslandSuper,307 cpgIslandSuper,587 est,695 est,724 intronEst,776 intronEst,808 microsat,108 mrna,411 mrna,441 netNeoSch1,664 netNeoSch1,682 netNeoSch1,803 netNeoSch1,848 netNeoSch1,856 netNeoSch1,876 netNeoSch1,888 netNeoSch1,913 netNeoSch1,931 netNeoSch1,966 netRn6,649 netRn6,667 netRn6,788 netRn6,833 netRn6,841 netRn6,861 netRn6,873 netRn6,898 netRn6,916 netRn6,951 refGene,285 refGene,314 rmsk,12 rmsk,262 simpleRepeat,68 transMapEnsemblV5,220 transMapEnsemblV5,237 transMapEnsemblV5,282 transMapEnsemblV5,314 transMapEnsemblV5,676 transMapEstV5,189 transMapEstV5,206 transMapEstV5,251 transMapEstV5,283 transMapEstV5,645 transMapRefSeqV5,189 transMapRefSeqV5,206 transMapRefSeqV5,251 transMapRefSeqV5,283 transMapRefSeqV5,645 transMapRnaV5,189 transMapRnaV5,206 transMapRnaV5,251 transMapRnaV5,283 transMapRnaV5,645 transMapV5,295 transMapV5,312 transMapV5,357 transMapV5,389 transMapV5,751 ucscToINSDC,48 uniprot,799 uniprot,815 uniprot,1354 uniprot,1625 uniprot,1941 windowmaskerSdust,52 windowmaskerSdust,78 xenoRefGene,251 xenoRefGene,280 way transMapEnsemblV5,587 transMapEstV5,556 transMapRefSeqV5,556 transMapRnaV5,556 transMapV5,662 uniprot,1459 ways gc5BaseBw,47 we ensGene,146 rmsk,122 uniprot,1224 uniprot,1453 uniprot,1859 webb chainNeoSch1,945 chainNeoSch1,982 chainNetNeoSch1,948 chainNetNeoSch1,985 chainNetRn6,933 chainNetRn6,970 chainRn6,930 chainRn6,967 netNeoSch1,945 netNeoSch1,982 netRn6,930 netRn6,967 weekly refGene,37 xenoRefGene,40 well augustusGene,78 cpgIslandExt,549 cpgIslandExtUnmasked,552 cpgIslandSuper,549 est,539 est,562 genscan,36 intronEst,620 intronEst,643 rmsk,54 were augustusGene,50 augustusGene,66 augustusGene,125 augustusGene,149 augustusGene,182 chainNeoSch1,591 chainNeoSch1,599 chainNeoSch1,606 chainNeoSch1,613 chainNeoSch1,625 chainNeoSch1,700 chainNeoSch1,774 chainNeoSch1,954 chainNeoSch1,998 chainNeoSch1,1012 chainNetNeoSch1,594 chainNetNeoSch1,602 chainNetNeoSch1,609 chainNetNeoSch1,616 chainNetNeoSch1,628 chainNetNeoSch1,703 chainNetNeoSch1,777 chainNetNeoSch1,957 chainNetNeoSch1,1001 chainNetNeoSch1,1015 chainNetRn6,581 chainNetRn6,589 chainNetRn6,596 chainNetRn6,603 chainNetRn6,615 chainNetRn6,688 chainNetRn6,762 chainNetRn6,942 chainNetRn6,986 chainNetRn6,1000 chainRn6,578 chainRn6,586 chainRn6,593 chainRn6,600 chainRn6,612 chainRn6,685 chainRn6,759 chainRn6,939 chainRn6,983 chainRn6,997 cpgIslandExt,227 cpgIslandExtUnmasked,230 cpgIslandSuper,227 ensGene,13 est,589 est,647 est,719 gc5BaseBw,79 intronEst,670 intronEst,728 mrna,387 mrna,435 netNeoSch1,591 netNeoSch1,599 netNeoSch1,606 netNeoSch1,613 netNeoSch1,625 netNeoSch1,700 netNeoSch1,774 netNeoSch1,954 netNeoSch1,998 netNeoSch1,1012 netRn6,578 netRn6,586 netRn6,593 netRn6,600 netRn6,612 netRn6,685 netRn6,759 netRn6,939 netRn6,983 netRn6,997 refGene,252 refGene,268 refGene,309 transMapEnsemblV5,155 transMapEnsemblV5,185 transMapEnsemblV5,211 transMapEnsemblV5,242 transMapEnsemblV5,248 transMapEnsemblV5,262 transMapEnsemblV5,348 transMapEnsemblV5,379 transMapEnsemblV5,392 transMapEstV5,124 transMapEstV5,154 transMapEstV5,180 transMapEstV5,211 transMapEstV5,217 transMapEstV5,231 transMapEstV5,317 transMapEstV5,348 transMapEstV5,361 transMapRefSeqV5,124 transMapRefSeqV5,154 transMapRefSeqV5,180 transMapRefSeqV5,211 transMapRefSeqV5,217 transMapRefSeqV5,231 transMapRefSeqV5,317 transMapRefSeqV5,348 transMapRefSeqV5,361 transMapRnaV5,124 transMapRnaV5,154 transMapRnaV5,180 transMapRnaV5,211 transMapRnaV5,217 transMapRnaV5,231 transMapRnaV5,317 transMapRnaV5,348 transMapRnaV5,361 transMapV5,115 transMapV5,128 transMapV5,230 transMapV5,260 transMapV5,286 transMapV5,317 transMapV5,323 transMapV5,337 transMapV5,423 transMapV5,454 transMapV5,467 ucscToINSDC,35 uniprot,782 uniprot,794 uniprot,930 uniprot,937 uniprot,1386 uniprot,1471 uniprot,1505 uniprot,1515 xenoRefGene,218 xenoRefGene,234 xenoRefGene,275 wget uniprot,1903 uniprot,1913 wheeler est,779 intronEst,863 mrna,496 when augustusGene,188 augustusGene,238 chainNeoSch1,419 chainNetNeoSch1,422 chainNetRn6,411 chainRn6,408 est,143 est,153 est,680 intronEst,33 intronEst,224 intronEst,234 intronEst,761 mrna,89 mrna,99 mrna,396 netNeoSch1,419 netRn6,408 refGene,270 transMapEnsemblV5,465 transMapEstV5,434 transMapRefSeqV5,434 transMapRnaV5,434 transMapV5,540 uniprot,951 uniprot,1202 uniprot,1632 xenoRefGene,236 where chainNeoSch1,201 chainNetNeoSch1,204 chainNetRn6,196 chainRn6,193 cpgIslandExt,151 cpgIslandExt,393 cpgIslandExtUnmasked,154 cpgIslandExtUnmasked,396 cpgIslandSuper,151 cpgIslandSuper,393 gold,94 netNeoSch1,201 netRn6,193 transMapEnsemblV5,270 transMapEnsemblV5,371 transMapEnsemblV5,420 transMapEnsemblV5,508 transMapEstV5,239 transMapEstV5,340 transMapEstV5,389 transMapEstV5,477 transMapRefSeqV5,239 transMapRefSeqV5,340 transMapRefSeqV5,389 transMapRefSeqV5,477 transMapRnaV5,239 transMapRnaV5,340 transMapRnaV5,389 transMapRnaV5,477 transMapV5,345 transMapV5,446 transMapV5,495 transMapV5,583 uniprot,1192 whether chainNeoSch1,872 chainNetNeoSch1,875 chainNetRn6,860 chainRn6,857 netNeoSch1,872 netRn6,857 which augustusGene,159 augustusGene,227 chainNeoSch1,336 chainNeoSch1,629 chainNeoSch1,837 chainNetNeoSch1,339 chainNetNeoSch1,632 chainNetNeoSch1,840 chainNetRn6,328 chainNetRn6,619 chainNetRn6,825 chainRn6,325 chainRn6,616 chainRn6,822 cpgIslandExt,85 cpgIslandExtUnmasked,88 cpgIslandSuper,85 est,103 est,230 est,496 est,521 est,667 intronEst,184 intronEst,311 intronEst,577 intronEst,602 intronEst,748 mrna,176 nestedRepeats,31 nestedRepeats,87 netNeoSch1,336 netNeoSch1,629 netNeoSch1,837 netRn6,325 netRn6,616 netRn6,822 rmsk,21 rmsk,64 rmsk,158 rmsk,171 rmsk,197 simpleRepeat,27 transMapEnsemblV5,614 transMapEstV5,583 transMapRefSeqV5,583 transMapRnaV5,583 transMapV5,144 transMapV5,689 uniprot,158 uniprot,1380 uniprot,1768 while chainNeoSch1,224 chainNetNeoSch1,227 chainNetRn6,219 chainRn6,216 netNeoSch1,224 netRn6,216 white gap,104 whole chainNeoSch1,476 chainNetNeoSch1,479 chainNetRn6,468 chainRn6,465 cpgIslandExt,167 cpgIslandExtUnmasked,170 cpgIslandSuper,167 gold,149 netNeoSch1,476 netRn6,465 transMapEnsemblV5,604 transMapEstV5,573 transMapRefSeqV5,573 transMapRnaV5,573 transMapV5,679 whose transMapEnsemblV5,217 transMapEstV5,186 transMapRefSeqV5,186 transMapRnaV5,186 transMapV5,292 width cpgIslandExt,430 cpgIslandExt,467 cpgIslandExt,470 cpgIslandExt,478 cpgIslandExtUnmasked,433 cpgIslandExtUnmasked,470 cpgIslandExtUnmasked,473 cpgIslandExtUnmasked,481 cpgIslandSuper,430 cpgIslandSuper,467 cpgIslandSuper,470 cpgIslandSuper,478 wildcards est,268 intronEst,349 mrna,214 will est,301 est,319 est,348 est,365 intronEst,382 intronEst,400 intronEst,429 intronEst,446 mrna,247 mrna,265 mrna,294 mrna,311 rmsk,277 rmsk,283 transMapEnsemblV5,61 uniprot,537 uniprot,665 uniprot,754 uniprot,1142 uniprot,1162 window-based windowmaskerSdust,101 windowmasker windowmaskerSdust,7 windowmaskerSdust,21 windowmaskerSdust,23 windowmaskerSdust,51 windowmaskerSdust,58 windowmaskerSdust,65 windowmaskerSdust,100 windowmaskersdust windowmaskerSdust,83 windows gc5BaseBw,7 gc5BaseBw,28 wish est,232 intronEst,313 mrna,178 refGene,239 xenoRefGene,205 with augustusGene,127 augustusGene,322 chainNeoSch1,46 chainNeoSch1,215 chainNeoSch1,226 chainNeoSch1,601 chainNeoSch1,715 chainNeoSch1,791 chainNeoSch1,915 chainNeoSch1,947 chainNeoSch1,979 chainNeoSch1,1116 chainNetNeoSch1,49 chainNetNeoSch1,218 chainNetNeoSch1,229 chainNetNeoSch1,604 chainNetNeoSch1,718 chainNetNeoSch1,794 chainNetNeoSch1,918 chainNetNeoSch1,950 chainNetNeoSch1,982 chainNetNeoSch1,1119 chainNetRn6,46 chainNetRn6,210 chainNetRn6,221 chainNetRn6,591 chainNetRn6,703 chainNetRn6,779 chainNetRn6,903 chainNetRn6,935 chainNetRn6,967 chainNetRn6,1104 chainRn6,43 chainRn6,207 chainRn6,218 chainRn6,588 chainRn6,700 chainRn6,776 chainRn6,900 chainRn6,932 chainRn6,964 chainRn6,1101 cpgIslandExt,19 cpgIslandExt,39 cpgIslandExt,141 cpgIslandExt,540 cpgIslandExtUnmasked,22 cpgIslandExtUnmasked,42 cpgIslandExtUnmasked,144 cpgIslandExtUnmasked,543 cpgIslandSuper,19 cpgIslandSuper,39 cpgIslandSuper,141 cpgIslandSuper,540 est,102 est,498 est,636 est,672 est,715 gap,52 gc5BaseBw,35 gold,51 gold,141 intronEst,183 intronEst,579 intronEst,717 intronEst,753 intronEst,796 microsat,69 microsat,76 mrna,431 nestedRepeats,133 netNeoSch1,46 netNeoSch1,215 netNeoSch1,226 netNeoSch1,601 netNeoSch1,715 netNeoSch1,791 netNeoSch1,915 netNeoSch1,947 netNeoSch1,979 netNeoSch1,1116 netRn6,43 netRn6,207 netRn6,218 netRn6,588 netRn6,700 netRn6,776 netRn6,900 netRn6,932 netRn6,964 netRn6,1101 refGene,261 refGene,305 rmsk,111 rmsk,225 simpleRepeat,52 transMapEnsemblV5,51 transMapEnsemblV5,182 transMapEnsemblV5,250 transMapEnsemblV5,350 transMapEnsemblV5,352 transMapEnsemblV5,581 transMapEstV5,151 transMapEstV5,219 transMapEstV5,319 transMapEstV5,321 transMapEstV5,550 transMapRefSeqV5,151 transMapRefSeqV5,219 transMapRefSeqV5,319 transMapRefSeqV5,321 transMapRefSeqV5,550 transMapRnaV5,151 transMapRnaV5,219 transMapRnaV5,319 transMapRnaV5,321 transMapRnaV5,550 transMapV5,257 transMapV5,325 transMapV5,425 transMapV5,427 transMapV5,656 uniprot,183 uniprot,258 uniprot,280 uniprot,458 uniprot,639 uniprot,716 uniprot,788 uniprot,946 uniprot,1475 uniprot,1481 uniprot,1496 uniprot,1501 uniprot,1718 uniprot,1948 windowmaskerSdust,54 xenoRefGene,227 xenoRefGene,271 within est,136 est,549 est,704 gold,116 intronEst,217 intronEst,630 intronEst,785 mrna,82 mrna,420 refGene,116 refGene,294 simpleRepeat,37 transMapEnsemblV5,652 transMapEstV5,621 transMapRefSeqV5,621 transMapRnaV5,621 transMapV5,727 uniprot,1109 uniprot,1313 uniprot,1345 uniprot,1488 uniprot,1806 xenoRefGene,82 xenoRefGene,260 without uniprot,139 wj chainNeoSch1,1059 chainNeoSch1,1101 chainNetNeoSch1,1062 chainNetNeoSch1,1104 chainNetRn6,1047 chainNetRn6,1089 chainRn6,1044 chainRn6,1086 est,798 intronEst,882 mrna,515 netNeoSch1,1059 netNeoSch1,1101 netRn6,1044 netRn6,1086 refGene,335 xenoRefGene,301 wm windowmaskerSdust,1 wm_counts windowmaskerSdust,64 windowmaskerSdust,67 words uniprot,1201 worldwide est,741 intronEst,825 mrna,458 refGene,325 transMapEnsemblV5,698 transMapEstV5,667 transMapRefSeqV5,667 transMapRnaV5,667 transMapV5,773 xenoRefGene,291 would cpgIslandExt,184 cpgIslandExtUnmasked,187 cpgIslandSuper,184 ensGene,147 written genscan,19 microsat,109 simpleRepeat,69 www.repeatmasker.org nestedRepeats,333 rmsk,356 x uniprot,1923 xml uniprot,1510 y ensGene,177 yap chainNeoSch1,1042 chainNetNeoSch1,1045 chainNetRn6,1030 chainRn6,1027 netNeoSch1,1042 netRn6,1027 years uniprot,933 yip uniprot,2010 yl uniprot,2011 you est,231 intronEst,312 mrna,177 refGene,238 rmsk,115 uniprot,655 uniprot,689 uniprot,1443 xenoRefGene,204 younger nestedRepeats,94 your transMapEnsemblV5,629 transMapEstV5,598 transMapRefSeqV5,598 transMapRnaV5,598 transMapV5,704 uniprot,1783 z chainNeoSch1,1105 chainNetNeoSch1,1108 chainNetRn6,1093 chainRn6,1090 netNeoSch1,1105 netRn6,1090 zebrafish augustusGene,202 augustusGene,278 zhang chainNeoSch1,943 chainNeoSch1,1104 chainNetNeoSch1,946 chainNetNeoSch1,1107 chainNetRn6,931 chainNetRn6,1092 chainRn6,928 chainRn6,1089 netNeoSch1,943 netNeoSch1,1104 netRn6,928 netRn6,1089 zheng chainNeoSch1,942 chainNetNeoSch1,945 chainNetRn6,930 chainRn6,927 netNeoSch1,942 netRn6,927 zhu transMapEnsemblV5,784 transMapEstV5,753 transMapRefSeqV5,753 transMapRnaV5,753 transMapV5,859 zinc uniprot,326 zoomed-in genscan,103