This directory contains the tables from the UCSC Genome Browser
database for the Apis mellifera Amel_2.0 assembly (apiMel2, Jan. 2005)
from the Baylor College of Medicine HGSC Honey Bee Genome Project.
For more information, see the Baylor website:
http://www.hgsc.bcm.tmc.edu/projects/honeybee/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=apiMel2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/apiMel2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
For conditions of use regarding the A. mellifera sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 09-Jul-2017 07:28 5.0M
xenoRefSeqAli.sql 09-Jul-2017 07:28 2.1K
xenoRefGene.txt.gz 09-Jul-2017 07:28 5.4M
xenoRefGene.sql 09-Jul-2017 07:28 1.9K
xenoRefFlat.txt.gz 09-Jul-2017 07:29 4.9M
xenoRefFlat.sql 09-Jul-2017 07:29 1.7K
xenoMrna.txt.gz 09-Jul-2017 07:29 140M
xenoMrna.sql 09-Jul-2017 07:28 2.4K
trackDb.txt.gz 26-Mar-2017 12:18 16K
trackDb.sql 26-Mar-2017 12:18 2.0K
tableList.txt.gz 23-Jul-2017 03:55 3.3K
tableList.sql 23-Jul-2017 03:55 1.5K
tableDescriptions.txt.gz 23-Jul-2017 03:55 4.2K
tableDescriptions.sql 23-Jul-2017 03:55 1.4K
simpleRepeat.txt.gz 23-Feb-2005 16:08 2.5M
simpleRepeat.sql 01-Oct-2013 12:48 1.1K
scaffolds.txt.gz 02-Mar-2005 05:07 95K
scaffolds.sql 01-Oct-2013 12:48 592
rmsk.txt.gz 23-Feb-2005 16:07 8.7M
rmsk.sql 01-Oct-2013 12:48 1.1K
netDm2.txt.gz 04-Nov-2006 07:08 7.7M
netDm2.sql 04-Nov-2006 07:08 2.2K
mrnaOrientInfo.txt.gz 13-Jun-2017 15:38 1.4M
mrnaOrientInfo.sql 13-Jun-2017 15:38 1.9K
modelRefGene.txt.gz 10-Jun-2005 04:24 774K
modelRefGene.sql 01-Oct-2013 12:48 1.0K
microsat.txt.gz 23-Aug-2015 09:54 52K
microsat.sql 23-Aug-2015 09:54 1.5K
intronEst.txt.gz 12-Jun-2016 06:07 1.4M
intronEst.sql 12-Jun-2016 06:07 2.4K
history.txt.gz 23-Feb-2005 16:08 357
history.sql 01-Oct-2013 12:48 537
hgFindSpec.txt.gz 26-Mar-2017 12:19 871
hgFindSpec.sql 26-Mar-2017 12:19 1.7K
grp.txt.gz 02-Mar-2014 03:37 223
grp.sql 02-Mar-2014 03:37 1.4K
gold.txt.gz 23-Feb-2005 16:08 282K
gold.sql 01-Oct-2013 12:48 799
genscanPep.txt.gz 23-Feb-2005 16:08 4.3M
genscanPep.sql 01-Oct-2013 12:48 330
genscan.txt.gz 23-Feb-2005 16:08 939K
genscan.sql 01-Oct-2013 12:48 748
geneid.txt.gz 19-Jan-2006 05:51 971K
geneid.sql 01-Oct-2013 12:48 1.0K
gc5Base.txt.gz 23-Feb-2005 16:08 1.1M
gc5Base.sql 01-Oct-2013 12:48 891
gbLoaded.txt.gz 09-Jul-2017 07:28 175K
gbLoaded.sql 09-Jul-2017 07:28 1.7K
gbDelete_tmp.txt.gz 28-Sep-2005 04:52 180K
gbDelete_tmp.sql 01-Oct-2013 12:48 326
gap.txt.gz 23-Feb-2005 16:08 212K
gap.sql 01-Oct-2013 12:48 722
estOrientInfo.txt.gz 12-Jun-2016 06:06 866K
estOrientInfo.sql 12-Jun-2016 06:06 1.9K
ensPep.txt.gz 22-Apr-2005 05:39 2.9M
ensPep.sql 01-Oct-2013 12:48 322
ensGene.txt.gz 22-Apr-2005 05:39 1.5M
ensGene.sql 01-Oct-2013 12:48 1.0K
chromInfo.txt.gz 23-Feb-2005 16:08 244
chromInfo.sql 01-Oct-2013 12:48 396
brhInparalog.txt.gz 10-Jun-2005 04:24 547K
brhInparalog.sql 01-Oct-2013 12:48 756
blastHg17KG.txt.gz 30-Mar-2005 05:40 1.6M
blastHg17KG.sql 01-Oct-2013 12:48 1.3K
blastDm2FB.txt.gz 28-Jul-2005 05:23 971K
blastDm2FB.sql 01-Oct-2013 12:48 1.3K
bigFiles.txt.gz 23-Jul-2017 03:55 33
bigFiles.sql 23-Jul-2017 03:55 1.4K
augustusGene.txt.gz 26-Jul-2015 10:11 843K
augustusGene.sql 26-Jul-2015 10:11 1.9K
all_mrna.txt.gz 13-Jun-2017 15:37 7.0M
all_mrna.sql 13-Jun-2017 15:37 2.4K
all_est.txt.gz 12-Jun-2016 06:06 2.9M
all_est.sql 12-Jun-2016 06:06 2.4K
GroupUn_chainDm2Link.txt.gz 04-Nov-2006 07:09 61M
GroupUn_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
GroupUn_chainDm2.txt.gz 04-Nov-2006 07:09 3.0M
GroupUn_chainDm2.sql 04-Nov-2006 07:09 1.7K
Group16_chainDm2Link.txt.gz 04-Nov-2006 07:08 1.8M
Group16_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group16_chainDm2.txt.gz 04-Nov-2006 07:08 126K
Group16_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group15_chainDm2Link.txt.gz 04-Nov-2006 07:08 1.9M
Group15_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group15_chainDm2.txt.gz 04-Nov-2006 07:08 139K
Group15_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group14_chainDm2Link.txt.gz 04-Nov-2006 07:08 1.9M
Group14_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group14_chainDm2.txt.gz 04-Nov-2006 07:08 154K
Group14_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group13_chainDm2Link.txt.gz 04-Nov-2006 07:08 1.3M
Group13_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group13_chainDm2.txt.gz 04-Nov-2006 07:08 112K
Group13_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group12_chainDm2Link.txt.gz 04-Nov-2006 07:08 2.0M
Group12_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group12_chainDm2.txt.gz 04-Nov-2006 07:08 152K
Group12_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group11_chainDm2Link.txt.gz 04-Nov-2006 07:08 3.4M
Group11_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group11_chainDm2.txt.gz 04-Nov-2006 07:08 225K
Group11_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group10_chainDm2Link.txt.gz 04-Nov-2006 07:08 2.5M
Group10_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group10_chainDm2.txt.gz 04-Nov-2006 07:08 176K
Group10_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group9_chainDm2Link.txt.gz 04-Nov-2006 07:09 2.1M
Group9_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
Group9_chainDm2.txt.gz 04-Nov-2006 07:09 162K
Group9_chainDm2.sql 04-Nov-2006 07:09 1.7K
Group8_chainDm2Link.txt.gz 04-Nov-2006 07:09 2.5M
Group8_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
Group8_chainDm2.txt.gz 04-Nov-2006 07:09 184K
Group8_chainDm2.sql 04-Nov-2006 07:09 1.7K
Group7_chainDm2Link.txt.gz 04-Nov-2006 07:09 3.1M
Group7_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
Group7_chainDm2.txt.gz 04-Nov-2006 07:09 231K
Group7_chainDm2.sql 04-Nov-2006 07:09 1.7K
Group6_chainDm2Link.txt.gz 04-Nov-2006 07:09 3.1M
Group6_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
Group6_chainDm2.txt.gz 04-Nov-2006 07:09 228K
Group6_chainDm2.sql 04-Nov-2006 07:09 1.7K
Group5_chainDm2Link.txt.gz 04-Nov-2006 07:09 3.7M
Group5_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
Group5_chainDm2.txt.gz 04-Nov-2006 07:09 243K
Group5_chainDm2.sql 04-Nov-2006 07:09 1.7K
Group4_chainDm2Link.txt.gz 04-Nov-2006 07:08 2.5M
Group4_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group4_chainDm2.txt.gz 04-Nov-2006 07:08 213K
Group4_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group3_chainDm2Link.txt.gz 04-Nov-2006 07:08 3.0M
Group3_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group3_chainDm2.txt.gz 04-Nov-2006 07:08 350K
Group3_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group2_chainDm2Link.txt.gz 04-Nov-2006 07:08 3.1M
Group2_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group2_chainDm2.txt.gz 04-Nov-2006 07:08 234K
Group2_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group1_chainDm2Link.txt.gz 04-Nov-2006 07:08 5.6M
Group1_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group1_chainDm2.txt.gz 04-Nov-2006 07:08 384K
Group1_chainDm2.sql 04-Nov-2006 07:08 1.7K