This directory contains the tables from the UCSC Genome Browser
database for the Apis mellifera Amel_2.0 assembly (apiMel2, Jan. 2005)
from the Baylor College of Medicine HGSC Honey Bee Genome Project.
For more information, see the Baylor website:
http://www.hgsc.bcm.tmc.edu/projects/honeybee/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=apiMel2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/apiMel2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
For conditions of use regarding the A. mellifera sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 23-Jul-2017 03:55 33
grp.txt.gz 02-Mar-2014 03:37 223
chromInfo.txt.gz 23-Feb-2005 16:08 244
ensPep.sql 01-Oct-2013 12:48 322
gbDelete_tmp.sql 01-Oct-2013 12:48 326
genscanPep.sql 01-Oct-2013 12:48 330
history.txt.gz 23-Feb-2005 16:08 357
chromInfo.sql 01-Oct-2013 12:48 396
history.sql 01-Oct-2013 12:48 537
scaffolds.sql 01-Oct-2013 12:48 592
gap.sql 01-Oct-2013 12:48 722
genscan.sql 01-Oct-2013 12:48 748
brhInparalog.sql 01-Oct-2013 12:48 756
gold.sql 01-Oct-2013 12:48 799
hgFindSpec.txt.gz 26-Mar-2017 12:19 871
gc5Base.sql 01-Oct-2013 12:48 891
geneid.sql 01-Oct-2013 12:48 1.0K
ensGene.sql 01-Oct-2013 12:48 1.0K
modelRefGene.sql 01-Oct-2013 12:48 1.0K
rmsk.sql 01-Oct-2013 12:48 1.1K
simpleRepeat.sql 01-Oct-2013 12:48 1.1K
blastDm2FB.sql 01-Oct-2013 12:48 1.3K
blastHg17KG.sql 01-Oct-2013 12:48 1.3K
bigFiles.sql 23-Jul-2017 03:55 1.4K
grp.sql 02-Mar-2014 03:37 1.4K
Group1_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group2_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group3_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group4_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group5_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
Group6_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
Group7_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
Group8_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
Group9_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
Group10_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group11_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group12_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group13_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group14_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group15_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
Group16_chainDm2Link.sql 04-Nov-2006 07:08 1.4K
GroupUn_chainDm2Link.sql 04-Nov-2006 07:09 1.4K
tableDescriptions.sql 23-Jul-2017 03:55 1.4K
microsat.sql 23-Aug-2015 09:54 1.5K
tableList.sql 23-Jul-2017 03:55 1.5K
gbLoaded.sql 09-Jul-2017 07:28 1.7K
Group1_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group2_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group3_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group4_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group5_chainDm2.sql 04-Nov-2006 07:09 1.7K
Group6_chainDm2.sql 04-Nov-2006 07:09 1.7K
Group7_chainDm2.sql 04-Nov-2006 07:09 1.7K
Group8_chainDm2.sql 04-Nov-2006 07:09 1.7K
Group9_chainDm2.sql 04-Nov-2006 07:09 1.7K
Group10_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group11_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group12_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group13_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group14_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group15_chainDm2.sql 04-Nov-2006 07:08 1.7K
Group16_chainDm2.sql 04-Nov-2006 07:08 1.7K
GroupUn_chainDm2.sql 04-Nov-2006 07:09 1.7K
xenoRefFlat.sql 09-Jul-2017 07:29 1.7K
hgFindSpec.sql 26-Mar-2017 12:19 1.7K
estOrientInfo.sql 12-Jun-2016 06:06 1.9K
mrnaOrientInfo.sql 13-Jun-2017 15:38 1.9K
xenoRefGene.sql 09-Jul-2017 07:28 1.9K
augustusGene.sql 26-Jul-2015 10:11 1.9K
trackDb.sql 26-Mar-2017 12:18 2.0K
xenoRefSeqAli.sql 09-Jul-2017 07:28 2.1K
netDm2.sql 04-Nov-2006 07:08 2.2K
all_est.sql 12-Jun-2016 06:06 2.4K
all_mrna.sql 13-Jun-2017 15:37 2.4K
xenoMrna.sql 09-Jul-2017 07:28 2.4K
intronEst.sql 12-Jun-2016 06:07 2.4K
tableList.txt.gz 23-Jul-2017 03:55 3.3K
tableDescriptions.txt.gz 23-Jul-2017 03:55 4.2K
trackDb.txt.gz 26-Mar-2017 12:18 16K
microsat.txt.gz 23-Aug-2015 09:54 52K
scaffolds.txt.gz 02-Mar-2005 05:07 95K
Group13_chainDm2.txt.gz 04-Nov-2006 07:08 112K
Group16_chainDm2.txt.gz 04-Nov-2006 07:08 126K
Group15_chainDm2.txt.gz 04-Nov-2006 07:08 139K
Group12_chainDm2.txt.gz 04-Nov-2006 07:08 152K
Group14_chainDm2.txt.gz 04-Nov-2006 07:08 154K
Group9_chainDm2.txt.gz 04-Nov-2006 07:09 162K
gbLoaded.txt.gz 09-Jul-2017 07:28 175K
Group10_chainDm2.txt.gz 04-Nov-2006 07:08 176K
gbDelete_tmp.txt.gz 28-Sep-2005 04:52 180K
Group8_chainDm2.txt.gz 04-Nov-2006 07:09 184K
gap.txt.gz 23-Feb-2005 16:08 212K
Group4_chainDm2.txt.gz 04-Nov-2006 07:08 213K
Group11_chainDm2.txt.gz 04-Nov-2006 07:08 225K
Group6_chainDm2.txt.gz 04-Nov-2006 07:09 228K
Group7_chainDm2.txt.gz 04-Nov-2006 07:09 231K
Group2_chainDm2.txt.gz 04-Nov-2006 07:08 234K
Group5_chainDm2.txt.gz 04-Nov-2006 07:09 243K
gold.txt.gz 23-Feb-2005 16:08 282K
Group3_chainDm2.txt.gz 04-Nov-2006 07:08 350K
Group1_chainDm2.txt.gz 04-Nov-2006 07:08 384K
brhInparalog.txt.gz 10-Jun-2005 04:24 547K
modelRefGene.txt.gz 10-Jun-2005 04:24 774K
augustusGene.txt.gz 26-Jul-2015 10:11 843K
estOrientInfo.txt.gz 12-Jun-2016 06:06 866K
genscan.txt.gz 23-Feb-2005 16:08 939K
geneid.txt.gz 19-Jan-2006 05:51 971K
blastDm2FB.txt.gz 28-Jul-2005 05:23 971K
gc5Base.txt.gz 23-Feb-2005 16:08 1.1M
Group13_chainDm2Link.txt.gz 04-Nov-2006 07:08 1.3M
intronEst.txt.gz 12-Jun-2016 06:07 1.4M
mrnaOrientInfo.txt.gz 13-Jun-2017 15:38 1.4M
ensGene.txt.gz 22-Apr-2005 05:39 1.5M
blastHg17KG.txt.gz 30-Mar-2005 05:40 1.6M
Group16_chainDm2Link.txt.gz 04-Nov-2006 07:08 1.8M
Group15_chainDm2Link.txt.gz 04-Nov-2006 07:08 1.9M
Group14_chainDm2Link.txt.gz 04-Nov-2006 07:08 1.9M
Group12_chainDm2Link.txt.gz 04-Nov-2006 07:08 2.0M
Group9_chainDm2Link.txt.gz 04-Nov-2006 07:09 2.1M
Group4_chainDm2Link.txt.gz 04-Nov-2006 07:08 2.5M
simpleRepeat.txt.gz 23-Feb-2005 16:08 2.5M
Group10_chainDm2Link.txt.gz 04-Nov-2006 07:08 2.5M
Group8_chainDm2Link.txt.gz 04-Nov-2006 07:09 2.5M
all_est.txt.gz 12-Jun-2016 06:06 2.9M
ensPep.txt.gz 22-Apr-2005 05:39 2.9M
GroupUn_chainDm2.txt.gz 04-Nov-2006 07:09 3.0M
Group3_chainDm2Link.txt.gz 04-Nov-2006 07:08 3.0M
Group6_chainDm2Link.txt.gz 04-Nov-2006 07:09 3.1M
Group2_chainDm2Link.txt.gz 04-Nov-2006 07:08 3.1M
Group7_chainDm2Link.txt.gz 04-Nov-2006 07:09 3.1M
Group11_chainDm2Link.txt.gz 04-Nov-2006 07:08 3.4M
Group5_chainDm2Link.txt.gz 04-Nov-2006 07:09 3.7M
genscanPep.txt.gz 23-Feb-2005 16:08 4.3M
xenoRefFlat.txt.gz 09-Jul-2017 07:29 4.9M
xenoRefSeqAli.txt.gz 09-Jul-2017 07:28 5.0M
xenoRefGene.txt.gz 09-Jul-2017 07:28 5.4M
Group1_chainDm2Link.txt.gz 04-Nov-2006 07:08 5.6M
all_mrna.txt.gz 13-Jun-2017 15:37 7.0M
netDm2.txt.gz 04-Nov-2006 07:08 7.7M
rmsk.txt.gz 23-Feb-2005 16:07 8.7M
GroupUn_chainDm2Link.txt.gz 04-Nov-2006 07:09 61M
xenoMrna.txt.gz 09-Jul-2017 07:29 140M