This directory contains a dump of the UCSC genome annotation database
for the Sep. 2004 cow genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (bosTau1, BCM HGSC Btau_1.0). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
----------------------------------------------------------------
If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/bosTau1/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
all_est.sql 25-Mar-2008 13:33 2.2K
all_est.txt.gz 25-Mar-2008 13:34 55M
all_mrna.sql 09-Sep-2008 03:33 2.2K
all_mrna.txt.gz 09-Sep-2008 03:33 1.9M
author.sql 09-Sep-2008 03:30 1.2K
author.txt.gz 09-Sep-2008 03:30 4.8M
blastHg17KG.sql 25-Mar-2008 13:35 2.2K
blastHg17KG.txt.gz 25-Mar-2008 13:35 2.4M
cds.sql 09-Sep-2008 03:33 1.2K
cds.txt.gz 09-Sep-2008 03:33 1.5M
cell.sql 06-May-2008 03:29 1.2K
cell.txt.gz 06-May-2008 03:29 1.1K
chainHg17.sql 25-Mar-2008 13:35 1.7K
chainHg17.txt.gz 25-Mar-2008 13:37 133M
chainHg17Link.sql 25-Mar-2008 13:40 1.4K
chainHg17Link.txt.gz 25-Mar-2008 13:51 689M
chainMm6.sql 25-Mar-2008 14:05 1.7K
chainMm6.txt.gz 25-Mar-2008 14:06 67M
chainMm6Link.sql 25-Mar-2008 14:07 1.4K
chainMm6Link.txt.gz 25-Mar-2008 14:15 437M
chromInfo.sql 25-Mar-2008 14:25 1.2K
chromInfo.txt.gz 25-Mar-2008 14:25 2.0M
contigAcc.sql 25-Mar-2008 14:25 1.2K
contigAcc.txt.gz 25-Mar-2008 14:25 3.7M
cpgIslandExt.sql 25-Mar-2008 14:25 1.6K
cpgIslandExt.txt.gz 25-Mar-2008 14:25 721K
description.sql 09-Sep-2008 03:31 1.2K
description.txt.gz 09-Sep-2008 03:31 9.9M
development.sql 25-Mar-2008 14:26 1.2K
development.txt.gz 25-Mar-2008 14:26 1.9K
estOrientInfo.sql 25-Mar-2008 14:26 1.7K
estOrientInfo.txt.gz 25-Mar-2008 14:26 19M
gap.sql 25-Mar-2008 14:26 1.6K
gap.txt.gz 25-Mar-2008 14:26 3.2M
gbCdnaInfo.sql 09-Sep-2008 03:33 2.6K
gbCdnaInfo.txt.gz 09-Sep-2008 03:34 21M
gbDelete_tmp.sql 25-Mar-2008 14:27 1.2K
gbDelete_tmp.txt.gz 25-Mar-2008 14:27 157K
gbExtFile.sql 09-Sep-2008 03:31 1.2K
gbExtFile.txt.gz 09-Sep-2008 03:31 2.0K
gbLoaded.sql 09-Sep-2008 03:31 1.5K
gbLoaded.txt.gz 09-Sep-2008 03:31 57K
gbMiscDiff.sql 19-Aug-2008 03:40 1.3K
gbMiscDiff.txt.gz 19-Aug-2008 03:40 2.9K
gbSeq.sql 09-Sep-2008 03:32 1.6K
gbSeq.txt.gz 09-Sep-2008 03:32 28M
gbStatus.sql 09-Sep-2008 03:30 1.9K
gbStatus.txt.gz 09-Sep-2008 03:31 13M
gbWarn.sql 06-May-2008 03:32 1.2K
gbWarn.txt.gz 06-May-2008 03:32 31
gc5Base.sql 25-Mar-2008 14:29 1.7K
gc5Base.txt.gz 25-Mar-2008 14:29 17M
geneName.sql 09-Sep-2008 03:31 1.2K
geneName.txt.gz 09-Sep-2008 03:31 3.2M
geneid.sql 25-Mar-2008 14:29 1.9K
geneid.txt.gz 25-Mar-2008 14:30 10M
geneidPep.sql 25-Mar-2008 14:30 1.1K
geneidPep.txt.gz 25-Mar-2008 14:30 12M
genscan.sql 25-Mar-2008 14:30 1.6K
genscan.txt.gz 25-Mar-2008 14:30 3.2M
genscanPep.sql 25-Mar-2008 14:30 1.2K
genscanPep.txt.gz 25-Mar-2008 14:30 10M
gold.sql 25-Mar-2008 14:30 1.6K
gold.txt.gz 25-Mar-2008 14:30 10M
grp.sql 25-Mar-2008 14:30 1.2K
grp.txt.gz 25-Mar-2008 14:30 204
hgFindSpec.sql 25-Mar-2008 14:30 1.7K
hgFindSpec.txt.gz 25-Mar-2008 14:30 603
history.sql 25-Mar-2008 14:30 1.4K
history.txt.gz 25-Mar-2008 14:30 312
imageClone.sql 09-Sep-2008 03:30 1.3K
imageClone.txt.gz 09-Sep-2008 03:30 2.6M
intronEst.sql 25-Mar-2008 14:30 2.2K
intronEst.txt.gz 25-Mar-2008 14:31 24M
keyword.sql 09-Sep-2008 03:29 1.2K
keyword.txt.gz 09-Sep-2008 03:29 24K
library.sql 25-Mar-2008 14:31 1.2K
library.txt.gz 25-Mar-2008 14:31 48K
mgcFullMrna.sql 25-Mar-2008 14:43 2.1K
mgcFullMrna.txt.gz 25-Mar-2008 14:43 3.4K
mgcGenes.sql 25-Mar-2008 14:43 1.9K
mgcGenes.txt.gz 25-Mar-2008 14:43 2.5K
mrnaClone.sql 25-Mar-2008 14:31 1.2K
mrnaClone.txt.gz 25-Mar-2008 14:31 5.1M
mrnaOrientInfo.sql 09-Sep-2008 03:33 1.7K
mrnaOrientInfo.txt.gz 09-Sep-2008 03:33 607K
netHg17.sql 25-Mar-2008 14:31 2.2K
netHg17.txt.gz 25-Mar-2008 14:33 68M
netMm6.sql 25-Mar-2008 14:34 2.2K
netMm6.txt.gz 25-Mar-2008 14:35 53M
organism.sql 09-Sep-2008 03:29 1.2K
organism.txt.gz 09-Sep-2008 03:29 1.0K
productName.sql 09-Sep-2008 03:30 1.2K
productName.txt.gz 09-Sep-2008 03:30 3.2M
quality.sql 25-Mar-2008 14:36 1.7K
quality.txt.gz 25-Mar-2008 14:38 64M
refLink.sql 09-Sep-2008 03:32 1.6K
refLink.txt.gz 09-Sep-2008 03:32 5.8M
refSeqStatus.sql 09-Sep-2008 03:30 1.4K
refSeqStatus.txt.gz 09-Sep-2008 03:30 724K
refSeqSummary.sql 09-Sep-2008 03:31 1.3K
refSeqSummary.txt.gz 09-Sep-2008 03:31 4.7M
rmsk.sql 25-Mar-2008 14:39 1.9K
rmsk.txt.gz 25-Mar-2008 14:40 101M
sex.sql 25-Mar-2008 14:42 1.2K
sex.txt.gz 25-Mar-2008 14:42 194
simpleRepeat.sql 25-Mar-2008 14:42 2.0K
simpleRepeat.txt.gz 25-Mar-2008 14:42 6.3M
source.sql 09-Sep-2008 03:30 1.2K
source.txt.gz 09-Sep-2008 03:30 1.4K
tableDescriptions.sql 18-May-2008 03:15 1.2K
tableDescriptions.txt.gz 18-May-2008 03:15 6.7K
tissue.sql 05-Aug-2008 03:49 1.2K
tissue.txt.gz 05-Aug-2008 03:49 6.3K
trackDb.sql 01-Jun-2008 03:15 2.0K
trackDb.txt.gz 01-Jun-2008 03:15 12K
xenoRefFlat.sql 09-Sep-2008 03:29 1.7K
xenoRefFlat.txt.gz 09-Sep-2008 03:30 12M
xenoRefGene.sql 09-Sep-2008 03:31 1.6K
xenoRefGene.txt.gz 09-Sep-2008 03:32 11M
xenoRefSeqAli.sql 09-Sep-2008 03:33 2.2K
xenoRefSeqAli.txt.gz 09-Sep-2008 03:33 16M