This directory contains a dump of the UCSC genome annotation database
for the Sep. 2004 cow genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (bosTau1, BCM HGSC Btau_1.0). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/bovine/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/bosTau1/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the cow assembly data at
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html.
Name Last modified Size Description
Parent Directory -
gbWarn.txt.gz 06-May-2008 03:32 31
sex.txt.gz 25-Mar-2008 14:42 194
grp.txt.gz 25-Mar-2008 14:30 204
history.txt.gz 25-Mar-2008 14:30 312
hgFindSpec.txt.gz 25-Mar-2008 14:30 603
organism.txt.gz 09-Sep-2008 03:29 1.0K
cell.txt.gz 06-May-2008 03:29 1.1K
geneidPep.sql 25-Mar-2008 14:30 1.1K
gbDelete_tmp.sql 25-Mar-2008 14:27 1.2K
genscanPep.sql 25-Mar-2008 14:30 1.2K
contigAcc.sql 25-Mar-2008 14:25 1.2K
grp.sql 25-Mar-2008 14:30 1.2K
gbWarn.sql 06-May-2008 03:32 1.2K
chromInfo.sql 25-Mar-2008 14:25 1.2K
cds.sql 09-Sep-2008 03:33 1.2K
sex.sql 25-Mar-2008 14:42 1.2K
cell.sql 06-May-2008 03:29 1.2K
author.sql 09-Sep-2008 03:30 1.2K
source.sql 09-Sep-2008 03:30 1.2K
tissue.sql 05-Aug-2008 03:49 1.2K
keyword.sql 09-Sep-2008 03:29 1.2K
library.sql 25-Mar-2008 14:31 1.2K
geneName.sql 09-Sep-2008 03:31 1.2K
organism.sql 09-Sep-2008 03:29 1.2K
mrnaClone.sql 25-Mar-2008 14:31 1.2K
tableDescriptions.sql 18-May-2008 03:15 1.2K
gbExtFile.sql 09-Sep-2008 03:31 1.2K
description.sql 09-Sep-2008 03:31 1.2K
development.sql 25-Mar-2008 14:26 1.2K
productName.sql 09-Sep-2008 03:30 1.2K
gbMiscDiff.sql 19-Aug-2008 03:40 1.3K
refSeqSummary.sql 09-Sep-2008 03:31 1.3K
imageClone.sql 09-Sep-2008 03:30 1.3K
source.txt.gz 09-Sep-2008 03:30 1.4K
chainMm6Link.sql 25-Mar-2008 14:07 1.4K
chainHg17Link.sql 25-Mar-2008 13:40 1.4K
refSeqStatus.sql 09-Sep-2008 03:30 1.4K
history.sql 25-Mar-2008 14:30 1.4K
gbLoaded.sql 09-Sep-2008 03:31 1.5K
gap.sql 25-Mar-2008 14:26 1.6K
genscan.sql 25-Mar-2008 14:30 1.6K
cpgIslandExt.sql 25-Mar-2008 14:25 1.6K
xenoRefGene.sql 09-Sep-2008 03:31 1.6K
gbSeq.sql 09-Sep-2008 03:32 1.6K
refLink.sql 09-Sep-2008 03:32 1.6K
gold.sql 25-Mar-2008 14:30 1.6K
hgFindSpec.sql 25-Mar-2008 14:30 1.7K
xenoRefFlat.sql 09-Sep-2008 03:29 1.7K
estOrientInfo.sql 25-Mar-2008 14:26 1.7K
mrnaOrientInfo.sql 09-Sep-2008 03:33 1.7K
chainMm6.sql 25-Mar-2008 14:05 1.7K
gc5Base.sql 25-Mar-2008 14:29 1.7K
quality.sql 25-Mar-2008 14:36 1.7K
chainHg17.sql 25-Mar-2008 13:35 1.7K
development.txt.gz 25-Mar-2008 14:26 1.9K
mgcGenes.sql 25-Mar-2008 14:43 1.9K
gbStatus.sql 09-Sep-2008 03:30 1.9K
rmsk.sql 25-Mar-2008 14:39 1.9K
geneid.sql 25-Mar-2008 14:29 1.9K
simpleRepeat.sql 25-Mar-2008 14:42 2.0K
gbExtFile.txt.gz 09-Sep-2008 03:31 2.0K
trackDb.sql 01-Jun-2008 03:15 2.0K
mgcFullMrna.sql 25-Mar-2008 14:43 2.1K
netMm6.sql 25-Mar-2008 14:34 2.2K
netHg17.sql 25-Mar-2008 14:31 2.2K
all_est.sql 25-Mar-2008 13:33 2.2K
all_mrna.sql 09-Sep-2008 03:33 2.2K
intronEst.sql 25-Mar-2008 14:30 2.2K
blastHg17KG.sql 25-Mar-2008 13:35 2.2K
xenoRefSeqAli.sql 09-Sep-2008 03:33 2.2K
mgcGenes.txt.gz 25-Mar-2008 14:43 2.5K
gbCdnaInfo.sql 09-Sep-2008 03:33 2.6K
gbMiscDiff.txt.gz 19-Aug-2008 03:40 2.9K
mgcFullMrna.txt.gz 25-Mar-2008 14:43 3.4K
tissue.txt.gz 05-Aug-2008 03:49 6.3K
tableDescriptions.txt.gz 18-May-2008 03:15 6.7K
trackDb.txt.gz 01-Jun-2008 03:15 12K
keyword.txt.gz 09-Sep-2008 03:29 24K
library.txt.gz 25-Mar-2008 14:31 48K
gbLoaded.txt.gz 09-Sep-2008 03:31 57K
gbDelete_tmp.txt.gz 25-Mar-2008 14:27 157K
mrnaOrientInfo.txt.gz 09-Sep-2008 03:33 607K
cpgIslandExt.txt.gz 25-Mar-2008 14:25 721K
refSeqStatus.txt.gz 09-Sep-2008 03:30 724K
cds.txt.gz 09-Sep-2008 03:33 1.5M
all_mrna.txt.gz 09-Sep-2008 03:33 1.9M
chromInfo.txt.gz 25-Mar-2008 14:25 2.0M
blastHg17KG.txt.gz 25-Mar-2008 13:35 2.4M
imageClone.txt.gz 09-Sep-2008 03:30 2.6M
gap.txt.gz 25-Mar-2008 14:26 3.2M
geneName.txt.gz 09-Sep-2008 03:31 3.2M
productName.txt.gz 09-Sep-2008 03:30 3.2M
genscan.txt.gz 25-Mar-2008 14:30 3.2M
contigAcc.txt.gz 25-Mar-2008 14:25 3.7M
refSeqSummary.txt.gz 09-Sep-2008 03:31 4.7M
author.txt.gz 09-Sep-2008 03:30 4.8M
mrnaClone.txt.gz 25-Mar-2008 14:31 5.1M
refLink.txt.gz 09-Sep-2008 03:32 5.8M
simpleRepeat.txt.gz 25-Mar-2008 14:42 6.3M
description.txt.gz 09-Sep-2008 03:31 9.9M
genscanPep.txt.gz 25-Mar-2008 14:30 10M
gold.txt.gz 25-Mar-2008 14:30 10M
geneid.txt.gz 25-Mar-2008 14:30 10M
xenoRefGene.txt.gz 09-Sep-2008 03:32 11M
xenoRefFlat.txt.gz 09-Sep-2008 03:30 12M
geneidPep.txt.gz 25-Mar-2008 14:30 12M
gbStatus.txt.gz 09-Sep-2008 03:31 13M
xenoRefSeqAli.txt.gz 09-Sep-2008 03:33 16M
gc5Base.txt.gz 25-Mar-2008 14:29 17M
estOrientInfo.txt.gz 25-Mar-2008 14:26 19M
gbCdnaInfo.txt.gz 09-Sep-2008 03:34 21M
intronEst.txt.gz 25-Mar-2008 14:31 24M
gbSeq.txt.gz 09-Sep-2008 03:32 28M
netMm6.txt.gz 25-Mar-2008 14:35 53M
all_est.txt.gz 25-Mar-2008 13:34 55M
quality.txt.gz 25-Mar-2008 14:38 64M
chainMm6.txt.gz 25-Mar-2008 14:06 67M
netHg17.txt.gz 25-Mar-2008 14:33 68M
rmsk.txt.gz 25-Mar-2008 14:40 101M
chainHg17.txt.gz 25-Mar-2008 13:37 133M
chainMm6Link.txt.gz 25-Mar-2008 14:15 437M
chainHg17Link.txt.gz 25-Mar-2008 13:51 689M