This directory contains a dump of the UCSC genome annotation database for
the August 2006 assembly of the cow genome (bosTau3, Baylor Release 3.1).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Baylor College of Medicine Human Genome Sequencing Center.
For more information on the cow genome, see the project website: http://www.hgsc.bcm.tmc.edu.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=bosTau3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/bosTau3/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
For conditions of use regarding the Cow genome sequence data, see
http://www.hgsc.bcm.tmc.edu/projects/conditions_for_use.html .
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
all_est.sql 05-Jun-2016 09:03 2.1K
all_est.txt.gz 05-Jun-2016 09:03 64M
all_mrna.sql 09-Jul-2017 07:34 2.1K
all_mrna.txt.gz 09-Jul-2017 07:34 1.6M
augustusGene.sql 26-Jul-2015 10:13 1.9K
augustusGene.txt.gz 26-Jul-2015 10:13 2.3M
bigFiles.sql 09-Jul-2017 07:34 1.4K
bigFiles.txt.gz 09-Jul-2017 07:34 33
blastHg18KG.sql 21-Aug-2007 18:13 2.1K
blastHg18KG.txt.gz 21-Aug-2007 18:13 3.5M
chainHg18.sql 21-Aug-2007 18:13 1.7K
chainHg18.txt.gz 21-Aug-2007 18:15 153M
chainHg18Link.sql 21-Aug-2007 18:16 1.4K
chainHg18Link.txt.gz 21-Aug-2007 18:25 773M
chainMm9.sql 18-Oct-2007 18:04 1.6K
chainMm9.txt.gz 18-Oct-2007 18:05 69M
chainMm9Link.sql 18-Oct-2007 17:36 1.4K
chainMm9Link.txt.gz 18-Oct-2007 17:48 509M
chainRn4.sql 21-Aug-2007 18:52 1.6K
chainRn4.txt.gz 21-Aug-2007 18:52 58M
chainRn4Link.sql 21-Aug-2007 18:53 1.4K
chainRn4Link.txt.gz 21-Aug-2007 18:59 464M
chromInfo.sql 21-Aug-2007 19:05 1.2K
chromInfo.txt.gz 21-Aug-2007 19:05 64K
cpgIslandExt.sql 21-Aug-2007 19:05 1.6K
cpgIslandExt.txt.gz 21-Aug-2007 19:05 801K
cpgIslandExtUnmasked.sql 01-Jun-2014 08:25 1.7K
cpgIslandExtUnmasked.txt.gz 01-Jun-2014 08:25 888K
ensGene.sql 25-Apr-2008 03:16 1.9K
ensGene.txt.gz 25-Apr-2008 03:16 2.4M
ensGtp.sql 25-Apr-2008 03:16 1.3K
ensGtp.txt.gz 25-Apr-2008 03:16 297K
ensPep.sql 25-Apr-2008 03:16 1.1K
ensPep.txt.gz 25-Apr-2008 03:16 7.3M
estOrientInfo.sql 05-Jun-2016 09:03 1.8K
estOrientInfo.txt.gz 05-Jun-2016 09:03 20M
extFile.sql 21-Aug-2007 19:05 1.3K
extFile.txt.gz 21-Aug-2007 19:05 68
gap.sql 21-Aug-2007 19:05 1.5K
gap.txt.gz 21-Aug-2007 19:05 936K
gbLoaded.sql 09-Jul-2017 07:33 1.6K
gbLoaded.txt.gz 09-Jul-2017 07:33 16K
gc5Base.sql 21-Aug-2007 19:07 1.7K
gc5Base.txt.gz 21-Aug-2007 19:08 11M
geneid.sql 03-Apr-2008 03:13 1.9K
geneid.txt.gz 03-Apr-2008 03:13 2.7M
geneidPep.sql 03-Apr-2008 03:13 1.1K
geneidPep.txt.gz 03-Apr-2008 03:13 8.2M
genscan.sql 21-Aug-2007 19:08 1.6K
genscan.txt.gz 21-Aug-2007 19:08 3.2M
genscanPep.sql 21-Aug-2007 19:08 1.2K
genscanPep.txt.gz 21-Aug-2007 19:08 11M
genscanSubopt.sql 21-Aug-2007 19:08 1.5K
genscanSubopt.txt.gz 21-Aug-2007 19:08 6.3M
gold.sql 21-Aug-2007 19:08 1.6K
gold.txt.gz 21-Aug-2007 19:08 2.2M
grp.sql 02-Mar-2014 03:37 1.4K
grp.txt.gz 02-Mar-2014 03:37 208
hgFindSpec.sql 09-Jul-2017 07:34 1.7K
hgFindSpec.txt.gz 09-Jul-2017 07:34 937
history.sql 21-Aug-2007 19:08 1.4K
history.txt.gz 21-Aug-2007 19:08 656
intronEst.sql 05-Jun-2016 09:02 2.1K
intronEst.txt.gz 05-Jun-2016 09:02 37M
mgcFullMrna.sql 05-Jun-2016 09:02 2.1K
mgcFullMrna.txt.gz 05-Jun-2016 09:02 926K
mgcGenes.sql 05-Jun-2016 09:02 1.9K
mgcGenes.txt.gz 05-Jun-2016 09:02 881K
mrnaOrientInfo.sql 09-Jul-2017 07:34 1.8K
mrnaOrientInfo.txt.gz 09-Jul-2017 07:34 585K
netHg18.sql 21-Aug-2007 19:09 2.2K
netHg18.txt.gz 21-Aug-2007 19:10 67M
netMm9.sql 18-Oct-2007 18:01 2.2K
netMm9.txt.gz 18-Oct-2007 18:03 55M
netRn4.sql 21-Aug-2007 19:12 2.2K
netRn4.txt.gz 21-Aug-2007 19:13 53M
quality.sql 21-Aug-2007 19:14 1.7K
quality.txt.gz 21-Aug-2007 19:15 56M
refFlat.sql 09-Jul-2017 07:33 1.7K
refFlat.txt.gz 09-Jul-2017 07:33 1.4M
refGene.sql 09-Jul-2017 07:34 1.9K
refGene.txt.gz 09-Jul-2017 07:34 1.5M
refSeqAli.sql 09-Jul-2017 07:34 2.1K
refSeqAli.txt.gz 09-Jul-2017 07:34 1.5M
rmsk.sql 21-Aug-2007 19:15 1.9K
rmsk.txt.gz 21-Aug-2007 19:17 134M
sgpGene.sql 23-Dec-2007 15:48 1.9K
sgpGene.txt.gz 23-Dec-2007 15:48 2.6M
simpleRepeat.sql 21-Aug-2007 19:18 2.0K
simpleRepeat.txt.gz 21-Aug-2007 19:18 7.7M
snp127.sql 21-Aug-2007 19:18 2.3K
snp127.txt.gz 21-Aug-2007 19:18 30K
snp127ExceptionDesc.sql 21-Aug-2007 19:18 1.2K
snp127ExceptionDesc.txt.gz 21-Aug-2007 19:18 324
snp127Exceptions.sql 21-Aug-2007 19:18 1.3K
snp127Exceptions.txt.gz 21-Aug-2007 19:18 13K
snpSeq.sql 21-Aug-2007 19:18 1.2K
snpSeq.txt.gz 21-Aug-2007 19:18 13K
tableDescriptions.sql 09-Jul-2017 07:33 1.4K
tableDescriptions.txt.gz 09-Jul-2017 07:33 5.1K
tableList.sql 09-Jul-2017 07:33 1.5K
tableList.txt.gz 09-Jul-2017 07:33 3.7K
trackDb.sql 09-Jul-2017 07:34 2.0K
trackDb.txt.gz 09-Jul-2017 07:34 26K
xenoMrna.sql 21-Feb-2016 09:58 2.3K
xenoMrna.txt.gz 21-Feb-2016 09:59 333M
xenoRefFlat.sql 09-Jul-2017 07:33 1.7K
xenoRefFlat.txt.gz 09-Jul-2017 07:34 29M
xenoRefGene.sql 09-Jul-2017 07:33 1.9K
xenoRefGene.txt.gz 09-Jul-2017 07:33 32M
xenoRefSeqAli.sql 09-Jul-2017 07:34 2.1K
xenoRefSeqAli.txt.gz 09-Jul-2017 07:34 28M