This directory contains a dump of the UCSC genome annotation database for
the Jan. 2007 assembly of the C. brenneri genome (UCSC version caePb1,
WUSTL School of Medicine GSC version 4.0). The annotations were generated by
UCSC and collaborators worldwide.
Various strains of this Caenorhabditis are named Caenorhabditis n. sp. 4.
PB2801,
LKC28, CB5161, SB129, SB280.
This assembly was produced by the Genome Sequencing Center at
the Washington University School of Medicine in St. Louis (WUSTL).
For more information on the C. brenneri genome, see the project website:
http://genome.wustl.edu/genome.cgi?GENOME=Caenorhabditis%20brenneri.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=caePb1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/caePb1/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
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The C. brenneri sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
blastCe4SG.sql 02-Aug-2007 11:27 2.1K
blastCe4SG.txt.gz 02-Aug-2007 11:27 2.2M
chrUn_chainCaeRem2Link.sql 03-Aug-2007 14:24 1.4K
chrUn_chainCaeRem2Link.txt.gz 03-Aug-2007 14:33 474M
chrUn_chainCb3.sql 03-Aug-2007 14:41 1.7K
chrUn_chainCb3.txt.gz 03-Aug-2007 14:41 5.2M
chrUn_chainCb3Link.sql 03-Aug-2007 14:41 1.4K
chrUn_chainCb3Link.txt.gz 03-Aug-2007 14:42 27M
chrUn_chainCe4.sql 03-Aug-2007 14:42 1.7K
chrUn_chainCe4.txt.gz 03-Aug-2007 14:47 188M
chrUn_chainCe4Link.sql 03-Aug-2007 14:50 1.4K
chrUn_chainCe4Link.txt.gz 03-Aug-2007 14:55 295M
chrUn_chainPriPac1.sql 03-Aug-2007 14:59 1.7K
chrUn_chainPriPac1.txt.gz 03-Aug-2007 15:00 30M
chrUn_chainPriPac1Link.sql 03-Aug-2007 15:00 1.4K
chrUn_chainPriPac1Link.txt.gz 03-Aug-2007 15:01 55M
chrUn_gap.sql 03-Aug-2007 15:02 1.5K
chrUn_gap.txt.gz 03-Aug-2007 15:02 379K
chrUn_gold.sql 03-Aug-2007 15:02 1.6K
chrUn_gold.txt.gz 03-Aug-2007 15:02 178K
chrUn_rmsk.sql 03-Aug-2007 15:02 1.9K
chrUn_rmsk.txt.gz 03-Aug-2007 15:02 1.4M
chromInfo.sql 03-Aug-2007 15:02 1.2K
chromInfo.txt.gz 03-Aug-2007 15:02 69
ctgPos2.sql 03-Aug-2007 15:02 1.4K
ctgPos2.txt.gz 03-Aug-2007 15:02 396K
gc5Base.sql 03-Aug-2007 15:03 1.7K
gc5Base.txt.gz 03-Aug-2007 15:03 881K
history.sql 03-Aug-2007 15:03 1.4K
history.txt.gz 03-Aug-2007 15:03 536
netCaeRem2.sql 03-Aug-2007 15:04 2.2K
netCaeRem2.txt.gz 03-Aug-2007 15:04 8.1M
netCb3.sql 03-Aug-2007 15:04 2.2K
netCb3.txt.gz 03-Aug-2007 15:04 4.8M
netCe4.sql 03-Aug-2007 15:04 2.2K
netCe4.txt.gz 03-Aug-2007 15:04 6.6M
netPriPac1.sql 03-Aug-2007 15:04 2.2K
netPriPac1.txt.gz 03-Aug-2007 15:04 2.0M
quality.sql 03-Aug-2007 15:04 1.7K
quality.txt.gz 03-Aug-2007 15:04 3.6M
simpleRepeat.sql 03-Aug-2007 15:05 2.0K
simpleRepeat.txt.gz 03-Aug-2007 15:05 1.1M
windowmaskerSdust.sql 03-Aug-2007 15:05 1.3K
windowmaskerSdust.txt.gz 03-Aug-2007 15:05 9.1M
chrUn_chainCaeRem2.sql 04-Aug-2007 10:35 1.7K
chrUn_chainCaeRem2.txt.gz 04-Aug-2007 10:38 200M
tRNAs.sql 18-Mar-2012 17:38 1.7K
tRNAs.txt.gz 18-Mar-2012 17:38 25K
grp.sql 02-Mar-2014 03:40 1.4K
grp.txt.gz 02-Mar-2014 03:40 208
augustusGene.sql 26-Jul-2015 10:34 1.9K
augustusGene.txt.gz 26-Jul-2015 10:34 2.2M
microsat.sql 23-Aug-2015 10:49 1.5K
microsat.txt.gz 23-Aug-2015 10:49 8.1K
xenoMrna.sql 21-Feb-2016 10:41 2.3K
xenoMrna.txt.gz 21-Feb-2016 10:41 98M
mrnaOrientInfo.sql 05-Jun-2016 09:09 1.8K
mrnaOrientInfo.txt.gz 05-Jun-2016 09:09 3.3K
all_mrna.sql 05-Jun-2016 09:09 2.1K
all_mrna.txt.gz 05-Jun-2016 09:09 9.8K
hgFindSpec.sql 12-Feb-2017 10:46 1.7K
hgFindSpec.txt.gz 12-Feb-2017 10:46 523
trackDb.sql 12-Feb-2017 10:46 2.0K
trackDb.txt.gz 12-Feb-2017 10:46 15K
xenoRefSeqAli.sql 09-Jul-2017 07:48 2.1K
xenoRefSeqAli.txt.gz 09-Jul-2017 07:48 11M
xenoRefGene.sql 09-Jul-2017 07:48 1.9K
xenoRefGene.txt.gz 09-Jul-2017 07:48 11M
xenoRefFlat.sql 09-Jul-2017 07:48 1.7K
xenoRefFlat.txt.gz 09-Jul-2017 07:48 9.8M
gbLoaded.sql 09-Jul-2017 07:48 1.6K
gbLoaded.txt.gz 09-Jul-2017 07:48 5.3K
tableDescriptions.sql 23-Jul-2017 03:56 1.4K
tableDescriptions.txt.gz 23-Jul-2017 03:56 4.0K
tableList.sql 23-Jul-2017 03:56 1.5K
tableList.txt.gz 23-Jul-2017 03:56 2.6K
bigFiles.sql 23-Jul-2017 03:56 1.4K
bigFiles.txt.gz 23-Jul-2017 03:56 33