This directory contains reciprocal-best netted chains for calJac3-panTro5.

 - calJac3.panTro5.rbest.net.gz: calJac3-referenced recip.best net to panTro5.
 - calJac3.panTro5.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from calJac3 to panTro5 through the recip.best net.

 - panTro5.calJac3.rbest.net.gz: panTro5-referenced recip.best net.
 - panTro5.calJac3.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/calJac3.panTro5.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                           Last modified      Size  Description
      Parent Directory                                    -   
      axtRBestNet/                   2017-08-09 13:02    -   
      calJac3.panTro5.rbest.chain.gz 2017-08-08 21:29   56M  
      calJac3.panTro5.rbest.net.gz   2017-08-08 21:30   82M  
      md5sum.txt                     2017-08-08 21:30  256   
      panTro5.calJac3.rbest.chain.gz 2017-08-08 21:28   56M  
      panTro5.calJac3.rbest.net.gz   2017-08-08 21:27  108M