This directory contains a dump of the UCSC genome annotation 
database for the July 2004 GenBank assembly of the dog genome
(UCSC version canFam1) from the Broad Institute at MIT and Harvard.

Files included in this directory (updated nightly):

  - *.sql files: the MySQL commands used to create the tables.
    To see descriptions of the tables underlying Genome Browser annotation
    tracks, select the table in the Table Browser:
      http://genome.ucsc.edu/cgi-bin/hgTables?db=canFam1
    and click the "describe table schema" button.  There is also a "view
    table schema" link on the configuration page for each track.

  - *.txt.gz files: the database tables in a tab-delimited format 
    compressed with gzip. 

--------------------------------------------------------------
If you plan to download a large file or multiple files from this 
directory, we recommend you use ftp rather than downloading the files 
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to 
the directory goldenPath/canFam1/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the tables in this directory are freely usable for any 
purpose. 

The dog genome sequence is made freely available by the Dog Genome Sequencing
Project. Please cite the following publication when using these data:

Lindblad-Toh K, et al. Genome sequence, comparative analysis and haplotype
structure of the domestic dog. Nature. 2005 Dec 8;438:803-19.

      Name                        Last modified      Size  Description
Parent Directory - chr10_gap.txt.gz 2004-07-13 17:56 20K chr10_gold.txt.gz 2004-07-13 17:56 26K chr10_rmsk.txt.gz 2004-07-13 17:56 3.1M chr11_gap.txt.gz 2004-07-13 17:56 15K chr11_gold.txt.gz 2004-07-13 17:56 20K chr11_rmsk.txt.gz 2004-07-13 17:56 3.3M chr12_gap.txt.gz 2004-07-13 17:56 15K chr12_gold.txt.gz 2004-07-13 17:56 19K chr12_rmsk.txt.gz 2004-07-13 17:56 3.3M chr13_gap.txt.gz 2004-07-13 17:56 14K chr13_gold.txt.gz 2004-07-13 17:56 19K chr13_rmsk.txt.gz 2004-07-13 17:56 2.9M chr14_gap.txt.gz 2004-07-13 17:56 11K chr14_gold.txt.gz 2004-07-13 17:56 15K chr14_rmsk.txt.gz 2004-07-13 17:56 2.6M chr15_gap.txt.gz 2004-07-13 17:56 17K chr15_gold.txt.gz 2004-07-13 17:56 22K chr15_rmsk.txt.gz 2004-07-13 17:57 3.0M chr16_gap.txt.gz 2004-07-13 17:57 12K chr16_gold.txt.gz 2004-07-13 17:57 16K chr16_rmsk.txt.gz 2004-07-13 17:57 2.4M chr17_gap.txt.gz 2004-07-13 17:57 15K chr17_gold.txt.gz 2004-07-13 17:57 19K chr17_rmsk.txt.gz 2004-07-13 17:57 2.9M chr18_gap.txt.gz 2004-07-13 17:57 20K chr18_gold.txt.gz 2004-07-13 17:57 26K chr18_rmsk.txt.gz 2004-07-13 17:57 2.8M chr19_gap.txt.gz 2004-07-13 17:57 10K chr19_gold.txt.gz 2004-07-13 17:57 14K chr19_rmsk.txt.gz 2004-07-13 17:57 2.4M chr1_gap.txt.gz 2004-07-13 17:57 31K chr1_gold.txt.gz 2004-07-13 17:57 42K gc5Base.txt.gz 2004-07-13 17:57 9.4M chr1_rmsk.txt.gz 2004-07-13 17:57 5.3M chr20_gap.txt.gz 2004-07-13 17:57 18K chr20_gold.txt.gz 2004-07-13 17:57 24K chr20_rmsk.txt.gz 2004-07-13 17:57 2.8M chr21_gap.txt.gz 2004-07-13 17:58 11K chr21_gold.txt.gz 2004-07-13 17:58 14K chr21_rmsk.txt.gz 2004-07-13 17:58 2.4M chr22_gap.txt.gz 2004-07-13 17:58 12K chr22_gold.txt.gz 2004-07-13 17:58 15K chr22_rmsk.txt.gz 2004-07-13 17:58 2.6M chr23_gap.txt.gz 2004-07-13 17:58 10K chr23_gold.txt.gz 2004-07-13 17:58 13K chr23_rmsk.txt.gz 2004-07-13 17:58 2.4M chr24_gap.txt.gz 2004-07-13 17:58 13K chr24_gold.txt.gz 2004-07-13 17:58 17K chr24_rmsk.txt.gz 2004-07-13 17:58 2.4M chr25_gap.txt.gz 2004-07-13 17:58 12K chr25_gold.txt.gz 2004-07-13 17:58 15K chr25_rmsk.txt.gz 2004-07-13 17:58 2.2M chr26_gap.txt.gz 2004-07-13 17:58 11K chr26_gold.txt.gz 2004-07-13 17:58 14K chr26_rmsk.txt.gz 2004-07-13 17:58 1.8M chr27_gap.txt.gz 2004-07-13 17:58 12K chr27_gold.txt.gz 2004-07-13 17:58 15K chr27_rmsk.txt.gz 2004-07-13 17:58 2.1M chr28_gap.txt.gz 2004-07-13 17:58 9.5K chr28_gold.txt.gz 2004-07-13 17:58 12K chr28_rmsk.txt.gz 2004-07-13 17:58 1.8M chr29_gap.txt.gz 2004-07-13 17:58 7.9K chr29_gold.txt.gz 2004-07-13 17:58 10K chr29_rmsk.txt.gz 2004-07-13 17:58 1.8M chr2_gap.txt.gz 2004-07-13 17:58 22K chr2_gold.txt.gz 2004-07-13 17:58 29K chr2_rmsk.txt.gz 2004-07-13 17:58 3.9M chr30_gap.txt.gz 2004-07-13 17:58 9.6K chr30_gold.txt.gz 2004-07-13 17:58 12K chr30_rmsk.txt.gz 2004-07-13 17:58 1.9M chr31_gap.txt.gz 2004-07-13 17:58 8.2K chr31_gold.txt.gz 2004-07-13 17:58 11K chr31_rmsk.txt.gz 2004-07-13 17:58 1.6M chr32_gap.txt.gz 2004-07-13 17:58 6.7K chr32_gold.txt.gz 2004-07-13 17:58 9.0K chr32_rmsk.txt.gz 2004-07-13 17:58 1.8M chr33_gap.txt.gz 2004-07-13 17:58 7.7K chr33_gold.txt.gz 2004-07-13 17:58 9.9K chr33_rmsk.txt.gz 2004-07-13 17:58 1.4M chr34_gap.txt.gz 2004-07-13 17:58 8.7K chr34_gold.txt.gz 2004-07-13 17:58 11K chr34_rmsk.txt.gz 2004-07-13 17:59 1.8M chr35_gap.txt.gz 2004-07-13 17:59 5.7K chr35_gold.txt.gz 2004-07-13 17:59 7.4K chr35_rmsk.txt.gz 2004-07-13 17:59 1.2M chr36_gap.txt.gz 2004-07-13 17:59 6.7K chr36_gold.txt.gz 2004-07-13 17:59 8.7K chr36_rmsk.txt.gz 2004-07-13 17:59 1.3M chr37_gap.txt.gz 2004-07-13 17:59 6.9K chr37_gold.txt.gz 2004-07-13 17:59 9.0K chr37_rmsk.txt.gz 2004-07-13 17:59 1.3M chr38_gap.txt.gz 2004-07-13 17:59 6.2K chr38_gold.txt.gz 2004-07-13 17:59 8.0K chr38_rmsk.txt.gz 2004-07-13 17:59 1.0M chr3_gap.txt.gz 2004-07-13 17:59 20K chr3_gold.txt.gz 2004-07-13 17:59 26K chr3_rmsk.txt.gz 2004-07-13 17:59 4.0M chr4_gap.txt.gz 2004-07-13 17:59 17K chr4_gold.txt.gz 2004-07-13 17:59 23K chr4_rmsk.txt.gz 2004-07-13 17:59 4.0M chr5_gap.txt.gz 2004-07-13 17:59 24K chr5_gold.txt.gz 2004-07-13 17:59 32K chr5_rmsk.txt.gz 2004-07-13 17:59 4.0M chr6_gap.txt.gz 2004-07-13 17:59 20K chr6_gold.txt.gz 2004-07-13 17:59 27K chr6_rmsk.txt.gz 2004-07-13 17:59 3.6M chr7_gap.txt.gz 2004-07-13 17:59 17K chr7_gold.txt.gz 2004-07-13 17:59 22K chr7_rmsk.txt.gz 2004-07-13 17:59 3.5M chr8_gap.txt.gz 2004-07-13 17:59 17K chr8_gold.txt.gz 2004-07-13 17:59 23K chr8_rmsk.txt.gz 2004-07-13 17:59 3.3M chr9_gap.txt.gz 2004-07-13 17:59 15K chr9_gold.txt.gz 2004-07-13 17:59 20K chr9_rmsk.txt.gz 2004-07-13 17:59 2.5M chrM_gap.txt.gz 2004-07-13 17:59 33 chrM_rmsk.txt.gz 2004-07-13 17:59 263 chrUn_gap.txt.gz 2004-07-13 17:59 241K chrUn_gold.txt.gz 2004-07-13 17:59 317K chrUn_rmsk.txt.gz 2004-07-13 18:00 2.5M chrX_gap.txt.gz 2004-07-13 18:00 34K chrX_gold.txt.gz 2004-07-13 18:00 45K chrX_rmsk.txt.gz 2004-07-13 18:00 5.8M chromInfo.txt.gz 2004-07-13 18:00 458 genscanPep.txt.gz 2004-07-13 18:00 11M quality.txt.gz 2004-07-13 18:04 38M simpleRepeat.txt.gz 2004-07-13 18:05 14M blatFr1.txt.gz 2004-07-27 11:53 29M human_chm.txt.gz 2004-08-02 15:38 31M mouse_chm.txt.gz 2004-08-02 15:45 23M mzHg17Mm5_phast.txt.gz 2004-08-02 16:00 69M chr10_chainHg17.txt.gz 2004-08-02 16:09 1.1M chr10_chainHg17Link.txt.gz 2004-08-02 16:10 16M chr11_chainHg17.txt.gz 2004-08-02 16:10 5.0M chr11_chainHg17Link.txt.gz 2004-08-02 16:10 26M chr12_chainHg17.txt.gz 2004-08-02 16:11 1.1M chr12_chainHg17Link.txt.gz 2004-08-02 16:11 16M chr13_chainHg17.txt.gz 2004-08-02 16:12 4.0M chr13_chainHg17Link.txt.gz 2004-08-02 16:12 21M chr14_chainHg17.txt.gz 2004-08-02 16:12 1.8M chr14_chainHg17Link.txt.gz 2004-08-02 16:13 17M chr15_chainHg17.txt.gz 2004-08-02 16:13 2.4M chr15_chainHg17Link.txt.gz 2004-08-02 16:13 19M chr16_chainHg17.txt.gz 2004-08-02 16:14 1.8M chr16_chainHg17Link.txt.gz 2004-08-02 16:14 17M chr17_chainHg17.txt.gz 2004-08-02 16:15 2.3M chr17_chainHg17Link.txt.gz 2004-08-02 16:15 18M chr18_chainHg17.txt.gz 2004-08-02 16:15 3.6M chr18_chainHg17Link.txt.gz 2004-08-02 16:16 30M chr19_chainHg17.txt.gz 2004-08-02 16:16 631K chr19_chainHg17Link.txt.gz 2004-08-02 16:17 11M chr1_chainHg17.txt.gz 2004-08-02 16:18 53M chr1_chainHg17Link.txt.gz 2004-08-02 16:21 162M chr20_chainHg17.txt.gz 2004-08-02 16:23 9.0M chr20_chainHg17Link.txt.gz 2004-08-02 16:24 42M chr21_chainHg17.txt.gz 2004-08-02 16:25 2.3M chr21_chainHg17Link.txt.gz 2004-08-02 16:25 18M chr22_chainHg17.txt.gz 2004-08-02 16:25 687K chr22_chainHg17Link.txt.gz 2004-08-02 16:26 13M chr23_chainHg17.txt.gz 2004-08-02 16:26 2.6M chr23_chainHg17Link.txt.gz 2004-08-02 16:26 16M chr24_chainHg17.txt.gz 2004-08-02 16:26 1.7M chr24_chainHg17Link.txt.gz 2004-08-02 16:27 13M chr25_chainHg17.txt.gz 2004-08-02 16:27 1.5M chr25_chainHg17Link.txt.gz 2004-08-02 16:27 15M chr26_chainHg17.txt.gz 2004-08-02 16:27 4.6M chr26_chainHg17Link.txt.gz 2004-08-02 16:28 20M chr27_chainHg17.txt.gz 2004-08-02 16:28 1.6M chr27_chainHg17Link.txt.gz 2004-08-02 16:28 15M chr28_chainHg17.txt.gz 2004-08-02 16:29 1.9M chr28_chainHg17Link.txt.gz 2004-08-02 16:29 13M chr29_chainHg17.txt.gz 2004-08-02 16:29 722K chr29_chainHg17Link.txt.gz 2004-08-02 16:29 9.4M chr2_chainHg17.txt.gz 2004-08-02 16:29 2.0M chr2_chainHg17Link.txt.gz 2004-08-02 16:30 21M chr30_chainHg17.txt.gz 2004-08-02 16:30 1.1M chr30_chainHg17Link.txt.gz 2004-08-02 16:30 11M chr31_chainHg17.txt.gz 2004-08-02 16:30 532K chr31_chainHg17Link.txt.gz 2004-08-02 16:31 8.3M chr32_chainHg17.txt.gz 2004-08-02 16:31 619K chr32_chainHg17Link.txt.gz 2004-08-02 16:31 8.5M chr33_chainHg17.txt.gz 2004-08-02 16:31 705K chr33_chainHg17Link.txt.gz 2004-08-02 16:31 8.3M chr34_chainHg17.txt.gz 2004-08-02 16:31 502K chr34_chainHg17Link.txt.gz 2004-08-02 16:31 9.0M chr35_chainHg17.txt.gz 2004-08-02 16:32 4.8M chr35_chainHg17Link.txt.gz 2004-08-02 16:32 17M chr36_chainHg17.txt.gz 2004-08-02 16:32 427K chr36_chainHg17Link.txt.gz 2004-08-02 16:32 6.8M chr37_chainHg17.txt.gz 2004-08-02 16:32 400K chr37_chainHg17Link.txt.gz 2004-08-02 16:32 6.7M chr38_chainHg17.txt.gz 2004-08-02 16:33 691K chr38_chainHg17Link.txt.gz 2004-08-02 16:33 7.6M chr3_chainHg17.txt.gz 2004-08-02 16:33 2.0M chr3_chainHg17Link.txt.gz 2004-08-02 16:33 22M chr4_chainHg17.txt.gz 2004-08-02 16:34 3.7M chr4_chainHg17Link.txt.gz 2004-08-02 16:34 26M chr5_chainHg17.txt.gz 2004-08-02 16:35 5.6M chr5_chainHg17Link.txt.gz 2004-08-02 16:35 33M chr6_chainHg17.txt.gz 2004-08-02 16:36 7.2M chr6_chainHg17Link.txt.gz 2004-08-02 16:36 32M chr7_chainHg17.txt.gz 2004-08-02 16:37 2.3M chr7_chainHg17Link.txt.gz 2004-08-02 16:37 21M chr8_chainHg17.txt.gz 2004-08-02 16:38 1.7M chr8_chainHg17Link.txt.gz 2004-08-02 16:38 20M chr9_chainHg17.txt.gz 2004-08-02 16:38 1.7M chr9_chainHg17Link.txt.gz 2004-08-02 16:38 16M chrM_chainHg17.txt.gz 2004-08-02 16:39 12K chrM_chainHg17Link.txt.gz 2004-08-02 16:39 68K chrUn_chainHg17.txt.gz 2004-08-02 16:39 9.6M chrUn_chainHg17Link.txt.gz 2004-08-02 16:39 36M chrX_chainHg17.txt.gz 2004-08-02 16:40 5.7M chrX_chainHg17Link.txt.gz 2004-08-02 16:41 36M netHg17.txt.gz 2004-08-02 16:43 64M mzHg17Mm5_phast2_wig.txt.gz 2004-10-07 07:37 56M contigAcc.txt.gz 2004-10-14 04:16 300K twinscan.txt.gz 2004-11-18 11:58 1.9M twinscanPep.txt.gz 2004-11-18 11:58 6.0M genscan.txt.gz 2005-01-09 04:32 3.1M chr10_chainMm6.txt.gz 2005-05-05 05:10 1.0M chr10_chainMm6Link.txt.gz 2005-05-05 05:10 13M chr21_chainMm6.txt.gz 2005-05-05 05:10 1.9M chr11_chainMm6.txt.gz 2005-05-05 05:10 1.6M chr11_chainMm6Link.txt.gz 2005-05-05 05:10 17M chr12_chainMm6.txt.gz 2005-05-05 05:11 824K chr12_chainMm6Link.txt.gz 2005-05-05 05:11 12M chr13_chainMm6.txt.gz 2005-05-05 05:11 1.0M chr13_chainMm6Link.txt.gz 2005-05-05 05:11 11M chr14_chainMm6.txt.gz 2005-05-05 05:11 1.4M chr14_chainMm6Link.txt.gz 2005-05-05 05:11 16M chr15_chainMm6.txt.gz 2005-05-05 05:12 1.2M chr15_chainMm6Link.txt.gz 2005-05-05 05:12 15M chr16_chainMm6.txt.gz 2005-05-05 05:12 1.0M chr16_chainMm6Link.txt.gz 2005-05-05 05:12 12M chr17_chainMm6.txt.gz 2005-05-05 05:12 967K chr17_chainMm6Link.txt.gz 2005-05-05 05:12 11M chr18_chainMm6.txt.gz 2005-05-05 05:13 4.2M chr18_chainMm6Link.txt.gz 2005-05-05 05:13 33M chr19_chainMm6.txt.gz 2005-05-05 05:13 522K chr19_chainMm6Link.txt.gz 2005-05-05 05:13 8.0M chr1_chainMm6.txt.gz 2005-05-05 05:14 8.2M chr1_chainMm6Link.txt.gz 2005-05-05 05:14 42M chr20_chainMm6.txt.gz 2005-05-05 05:14 2.9M chr20_chainMm6Link.txt.gz 2005-05-05 05:15 25M chr21_chainMm6Link.txt.gz 2005-05-05 05:15 17M chr22_chainMm6.txt.gz 2005-05-05 05:15 551K chr22_chainMm6Link.txt.gz 2005-05-05 05:15 9.1M chr23_chainMm6.txt.gz 2005-05-05 05:16 760K chr23_chainMm6Link.txt.gz 2005-05-05 05:16 8.9M chr24_chainMm6.txt.gz 2005-05-05 05:16 476K chr24_chainMm6Link.txt.gz 2005-05-05 05:16 7.7M chr25_chainMm6.txt.gz 2005-05-05 05:16 845K chr25_chainMm6Link.txt.gz 2005-05-05 05:16 11M chr26_chainMm6.txt.gz 2005-05-05 05:16 1.0M chr26_chainMm6Link.txt.gz 2005-05-05 05:16 6.6M chr27_chainMm6.txt.gz 2005-05-05 05:16 1.3M chr27_chainMm6Link.txt.gz 2005-05-05 05:17 14M chr28_chainMm6.txt.gz 2005-05-05 05:17 550K chr28_chainMm6Link.txt.gz 2005-05-05 05:17 7.5M chr29_chainMm6.txt.gz 2005-05-05 05:17 483K chr29_chainMm6Link.txt.gz 2005-05-05 05:17 6.7M chr2_chainMm6.txt.gz 2005-05-05 05:17 1.0M chr2_chainMm6Link.txt.gz 2005-05-05 05:17 14M chr30_chainMm6.txt.gz 2005-05-05 05:17 803K chr30_chainMm6Link.txt.gz 2005-05-05 05:18 9.7M chr31_chainMm6.txt.gz 2005-05-05 05:18 434K chr31_chainMm6Link.txt.gz 2005-05-05 05:18 6.0M chr32_chainMm6.txt.gz 2005-05-05 05:18 418K chr32_chainMm6Link.txt.gz 2005-05-05 05:18 6.4M chr33_chainMm6.txt.gz 2005-05-05 05:18 577K chr33_chainMm6Link.txt.gz 2005-05-05 05:18 8.5M chr34_chainMm6.txt.gz 2005-05-05 05:18 377K chr34_chainMm6Link.txt.gz 2005-05-05 05:18 6.2M chr35_chainMm6.txt.gz 2005-05-05 05:18 1.2M chr35_chainMm6Link.txt.gz 2005-05-05 05:18 7.9M chr36_chainMm6.txt.gz 2005-05-05 05:19 329K chr36_chainMm6Link.txt.gz 2005-05-05 05:19 5.7M chr37_chainMm6.txt.gz 2005-05-05 05:19 294K chr37_chainMm6Link.txt.gz 2005-05-05 05:19 5.7M chr38_chainMm6.txt.gz 2005-05-05 05:19 714K chr38_chainMm6Link.txt.gz 2005-05-05 05:19 7.3M chr3_chainMm6.txt.gz 2005-05-05 05:19 1.0M chr3_chainMm6Link.txt.gz 2005-05-05 05:19 15M chr4_chainMm6.txt.gz 2005-05-05 05:19 1.1M chr4_chainMm6Link.txt.gz 2005-05-05 05:20 15M chr5_chainMm6.txt.gz 2005-05-05 05:20 2.1M chr5_chainMm6Link.txt.gz 2005-05-05 05:20 22M chr6_chainMm6.txt.gz 2005-05-05 05:20 1.7M chr6_chainMm6Link.txt.gz 2005-05-05 05:21 15M chr7_chainMm6.txt.gz 2005-05-05 05:21 1.2M chr7_chainMm6Link.txt.gz 2005-05-05 05:21 15M chr8_chainMm6.txt.gz 2005-05-05 05:21 1.3M chr8_chainMm6Link.txt.gz 2005-05-05 05:21 15M chr9_chainMm6.txt.gz 2005-05-05 05:21 1.2M chr9_chainMm6Link.txt.gz 2005-05-05 05:22 12M chrM_chainMm6.txt.gz 2005-05-05 05:22 3.6K chrM_chainMm6Link.txt.gz 2005-05-05 05:22 19K chrUn_chainMm6.txt.gz 2005-05-05 05:22 3.6M chrUn_chainMm6Link.txt.gz 2005-05-05 05:22 19M chrX_chainMm6.txt.gz 2005-05-05 05:22 2.1M chrX_chainMm6Link.txt.gz 2005-05-05 05:23 20M netMm6.txt.gz 2005-05-05 05:24 63M gbDelete_tmp.txt.gz 2005-09-27 05:01 180K seq.txt.gz 2005-12-04 05:12 4.7M bacEndPairs.txt.gz 2005-12-04 05:12 4.2M all_bacends.txt.gz 2005-12-04 05:12 50M ensGene.txt.gz 2006-03-08 08:21 2.4M ensGtp.txt.gz 2006-03-08 08:21 284K ensPep.txt.gz 2006-03-08 08:21 1.1M nscanGene.txt.gz 2006-04-23 03:43 2.0M snp125.sql 2006-08-26 08:45 2.2K snp125.txt.gz 2006-08-26 08:46 36M snp125ExceptionDesc.sql 2006-08-26 08:47 1.2K snp125ExceptionDesc.txt.gz 2006-08-26 08:47 392 snp125Exceptions.sql 2006-08-26 08:47 1.3K snp125Exceptions.txt.gz 2006-08-26 08:47 1.0M extFile.sql 2006-12-03 11:00 1.2K extFile.txt.gz 2006-12-03 11:00 1.7K snpSeq.sql 2006-12-03 11:01 1.1K snpSeq.txt.gz 2006-12-03 11:01 20M genomicSuperDups.sql 2007-12-14 20:03 2.6K genomicSuperDups.txt.gz 2007-12-14 20:03 5.2M microsat.sql 2008-02-24 03:12 1.3K microsat.txt.gz 2008-02-24 03:12 645K history.sql 2010-07-04 14:46 1.6K history.txt.gz 2010-07-04 14:46 245 all_bacends.sql 2013-10-01 12:48 1.3K bacEndPairs.sql 2013-10-01 12:48 852 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