This directory contains reciprocal-best netted chains for ce11-panRed1.

 - ce11.panRed1.rbest.net.gz: ce11-referenced recip.best net to panRed1.
 - ce11.panRed1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from ce11 to panRed1 through the recip.best net.

 - panRed1.ce11.rbest.net.gz: panRed1-referenced recip.best net.
 - panRed1.ce11.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.ce11.panRed1.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
      Parent Directory                                 -   
      axtRBestNet/                2015-07-02 11:46    -   
      ce11.panRed1.rbest.chain.gz 2015-07-02 11:46  473K  
      ce11.panRed1.rbest.net.gz   2015-07-02 11:46  714K  
      md5sum.txt                  2015-07-02 11:46  244   
      panRed1.ce11.rbest.chain.gz 2015-07-02 11:46  472K  
      panRed1.ce11.rbest.net.gz   2015-07-02 11:46  671K