This directory contains a dump of the UCSC genome annotation
database for the Mar. 2004 freeze of the C. elegans genome from
WormBase (ftp://ftp.sanger.ac.uk/pub/wormbase/WS120/CHROMOSOMES/).
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ce2
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
-----------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/ce2/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
------------------------------------------------------------------
All the tables in this directory are freely available for public use.
The C. elegans sequence is made freely available to the community by the
Genome Sequencing Center at the WUSTL School of Medicine. Please see the
WUSTL data use policy at http://genome.wustl.edu/data.cgi for data use
restrictions and citation information.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 2024-04-21 03:32 33
chrI_gap.txt.gz 2004-05-10 10:46 33
chrM_gap.txt.gz 2004-05-10 10:47 33
chrV_gap.txt.gz 2004-05-10 10:48 33
chrX_gap.txt.gz 2004-05-10 10:48 33
chrIV_gap.txt.gz 2004-05-10 10:46 34
chrM_mrna.txt.gz 2008-03-18 03:55 34
chrM_intronEst.txt.gz 2008-03-18 03:55 39
chrM_gold.txt.gz 2004-05-10 10:47 64
chrII_gap.txt.gz 2004-05-10 10:45 93
chrIII_gap.txt.gz 2004-05-10 10:44 123
chromInfo.txt.gz 2004-05-10 10:48 140
grp.txt.gz 2014-03-02 03:40 223
extFile.txt.gz 2004-09-28 10:05 295
geneidPep.sql 2013-10-01 12:48 324
sangerPep.sql 2013-10-01 12:48 333
twinscanPep.sql 2013-10-01 12:48 337
wormP2P.sql 2013-10-01 12:48 353
sangerToPfam.sql 2013-10-01 12:48 368
orfToGene.sql 2013-10-01 12:48 371
sangerToKim.sql 2013-10-01 12:48 373
sangerToRefSeq.sql 2013-10-01 12:48 379
kimExpDistance.sql 2013-10-01 12:48 390
chrM_chainCb1.txt.gz 2004-05-10 10:47 393
chromInfo.sql 2013-10-01 12:48 401
sangerIsoforms.sql 2013-10-01 12:48 403
chrM_wabaCbr.txt.gz 2004-05-10 10:47 412
sangerLinks.sql 2013-10-01 12:48 426
extFile.sql 2013-10-01 12:48 441
chrI_chainCb1Link.sql 2013-10-01 12:48 571
chrI_wabaCbr.sql 2013-10-01 12:48 571
chrM_wabaCbr.sql 2013-10-01 12:48 571
chrV_wabaCbr.sql 2013-10-01 12:48 571
chrX_wabaCbr.sql 2013-10-01 12:48 571
chrII_wabaCbr.sql 2013-10-01 12:48 573
chrIV_wabaCbr.sql 2013-10-01 12:48 573
chrIII_wabaCbr.sql 2013-10-01 12:48 575
chrM_chainCb1Link.sql 2013-10-01 12:48 580
chrV_chainCb1Link.sql 2013-10-01 12:48 580
chrX_chainCb1Link.sql 2013-10-01 12:48 580
chrII_chainCb1Link.sql 2013-10-01 12:48 582
chrIV_chainCb1Link.sql 2013-10-01 12:48 582
chrI_chainSelfLink.sql 2013-10-01 12:48 582
chrV_chainSelfLink.sql 2013-10-01 12:48 582
chrX_chainSelfLink.sql 2013-10-01 12:48 582
chrIII_chainCb1Link.sql 2013-10-01 12:48 584
chrII_chainSelfLink.sql 2013-10-01 12:48 584
chrIV_chainSelfLink.sql 2013-10-01 12:48 584
chrIII_chainSelfLink.sql 2013-10-01 12:48 586
seq.sql 2013-10-01 12:48 596
sangerCanonical.sql 2013-10-01 12:48 610
phastConsElements.sql 2013-10-01 12:48 651
axtNetCb1.sql 2013-10-01 12:48 661
chrM_rmsk.txt.gz 2004-05-10 10:47 662
c_briggsae_pwMaf.sql 2013-10-01 12:48 666
chrI_gap.sql 2013-10-01 12:48 709
chrM_gap.sql 2013-10-01 12:48 709
chrV_gap.sql 2013-10-01 12:48 709
chrX_gap.sql 2013-10-01 12:48 709
chrII_gap.sql 2013-10-01 12:48 711
chrIV_gap.sql 2013-10-01 12:48 711
chrIII_gap.sql 2013-10-01 12:48 713
picTar.sql 2013-10-01 12:48 747
miRNA.sql 2013-10-01 12:48 776
chrI_gold.sql 2013-10-01 12:48 786
chrM_gold.sql 2013-10-01 12:48 786
chrV_gold.sql 2013-10-01 12:48 786
chrX_gold.sql 2013-10-01 12:48 786
chrII_gold.sql 2013-10-01 12:48 788
chrIV_gold.sql 2013-10-01 12:48 788
chrIII_gold.sql 2013-10-01 12:48 790
mmBlastTab.sql 2013-10-01 12:48 798
sangerBlastTab.sql 2013-10-01 12:48 806
wabaCbr.sql 2013-10-01 12:48 832
sangerGene.sql 2013-10-01 12:48 833
chrI_chainCb1.sql 2013-10-01 12:48 857
chrM_chainCb1.sql 2013-10-01 12:48 857
chrV_chainCb1.sql 2013-10-01 12:48 857
chrX_chainCb1.sql 2013-10-01 12:48 857
chrII_chainCb1.sql 2013-10-01 12:48 859
chrIV_chainCb1.sql 2013-10-01 12:48 859
chrI_chainSelf.sql 2013-10-01 12:48 859
chrV_chainSelf.sql 2013-10-01 12:48 859
chrX_chainSelf.sql 2013-10-01 12:48 859
chrIII_chainCb1.sql 2013-10-01 12:48 861
chrII_chainSelf.sql 2013-10-01 12:48 861
chrIV_chainSelf.sql 2013-10-01 12:48 861
chrIII_chainSelf.sql 2013-10-01 12:48 863
phastCons.sql 2013-10-01 12:48 891
gc5Base.sql 2013-10-01 12:48 896
rnaCluster.sql 2013-10-01 12:48 953
history.txt.gz 2010-07-04 14:53 1.0K
hgFindSpec_pushedout.txt.gz 2021-12-27 12:21 1.0K
geneid.sql 2013-10-01 12:48 1.0K
twinscan.sql 2013-10-01 12:48 1.0K
chrI_rmsk.sql 2013-10-01 12:48 1.0K
chrM_rmsk.sql 2013-10-01 12:48 1.0K
chrV_rmsk.sql 2013-10-01 12:48 1.0K
chrX_rmsk.sql 2013-10-01 12:48 1.0K
chrII_rmsk.sql 2013-10-01 12:48 1.0K
chrIV_rmsk.sql 2013-10-01 12:48 1.0K
chrIII_rmsk.sql 2013-10-01 12:48 1.1K
sangerGenefinder.sql 2013-10-01 12:48 1.1K
hgFindSpec.txt.gz 2023-03-28 13:47 1.1K
simpleRepeat.sql 2013-10-01 12:48 1.1K
blatFr1.sql 2013-10-01 12:48 1.3K
chrI_blastzCb1.sql 2013-10-01 12:48 1.3K
chrM_blastzCb1.sql 2013-10-01 12:48 1.3K
chrV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrX_blastzCb1.sql 2013-10-01 12:48 1.3K
chrII_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIV_blastzCb1.sql 2013-10-01 12:48 1.3K
chrIII_blastzCb1.sql 2013-10-01 12:48 1.3K
netCb1.sql 2013-10-01 12:48 1.3K
blastHg16KG.sql 2013-10-01 12:48 1.3K
grp.sql 2014-03-02 03:40 1.4K
bigFiles.sql 2024-04-21 03:32 1.4K
tableDescriptions.sql 2024-04-20 02:03 1.5K
microsat.sql 2015-08-23 12:09 1.5K
history.sql 2010-07-04 14:53 1.5K
tableList.sql 2024-04-21 03:32 1.6K
rnBlastTab.sql 2006-07-22 11:29 1.6K
dmBlastTab.sql 2007-08-30 18:04 1.6K
hgBlastTab.sql 2007-04-08 09:42 1.6K
gbLoaded.sql 2020-08-21 06:44 1.7K
xenoRefFlat.sql 2020-08-21 06:44 1.7K
hgFindSpec.sql 2023-03-28 13:47 1.8K
drBlastTab.sql 2010-04-04 10:26 1.8K
hgFindSpec_pushedout.sql 2021-12-27 12:21 1.8K
refGene.sql 2020-08-21 06:36 1.8K
refFlat.sql 2020-08-21 06:39 1.9K
estOrientInfo.sql 2016-06-05 09:18 1.9K
mrnaOrientInfo.sql 2020-08-21 06:44 1.9K
augustusGene.sql 2015-07-26 11:22 1.9K
xenoRefGene.sql 2020-08-21 06:44 1.9K
chrM_chainCb1Link.txt.gz 2004-05-10 10:47 2.0K
trackDb.sql 2023-03-28 13:47 2.1K
trackDb_pushedout.sql 2021-12-27 12:21 2.1K
chrM_blastzCb1.txt.gz 2004-05-10 10:47 2.1K
xenoRefSeqAli.sql 2020-08-21 06:44 2.1K
chrM_mrna.sql 2008-03-18 03:55 2.2K
chrM_intronEst.sql 2008-03-18 03:55 2.2K
miRNA.txt.gz 2004-05-10 10:48 2.3K
chrI_mrna.sql 2020-05-07 17:18 2.4K
chrX_mrna.sql 2020-08-21 06:07 2.4K
chrII_mrna.sql 2020-08-21 06:07 2.4K
chrIV_mrna.sql 2020-08-21 06:07 2.4K
chrIII_mrna.sql 2020-08-21 06:07 2.4K
chrI_est.sql 2016-06-05 09:18 2.4K
chrM_est.sql 2016-06-05 09:18 2.4K
chrV_est.sql 2016-06-05 09:18 2.4K
chrX_est.sql 2016-06-05 09:18 2.4K
chrII_est.sql 2016-06-05 09:18 2.4K
chrIV_est.sql 2016-06-05 09:18 2.4K
chrV_mrna.sql 2018-01-07 06:38 2.4K
chrIII_est.sql 2016-06-05 09:18 2.4K
chrI_intronEst.sql 2016-06-05 09:18 2.4K
chrV_intronEst.sql 2016-06-05 09:18 2.4K
chrX_intronEst.sql 2016-06-05 09:18 2.4K
chrII_intronEst.sql 2016-06-05 09:18 2.4K
chrIV_intronEst.sql 2016-06-05 09:18 2.4K
chrIII_intronEst.sql 2016-06-05 09:18 2.4K
all_mrna.sql 2020-08-21 06:07 2.4K
refSeqAli.sql 2020-08-21 06:44 2.4K
all_est.sql 2016-06-05 09:18 2.4K
microsat.txt.gz 2015-08-23 12:09 3.0K
tableDescriptions.txt.gz 2024-04-20 02:03 6.4K
tableList.txt.gz 2024-04-21 03:32 6.7K
chrIII_gold.txt.gz 2004-05-10 10:44 6.9K
chrI_gold.txt.gz 2004-05-10 10:46 7.9K
chrIV_gold.txt.gz 2004-05-10 10:46 8.7K
chrII_gold.txt.gz 2004-05-10 10:45 8.7K
chrX_gold.txt.gz 2004-05-10 10:48 11K
chrV_gold.txt.gz 2004-05-10 10:48 12K
trackDb.txt.gz 2023-03-28 13:47 24K
trackDb_pushedout.txt.gz 2021-12-27 12:21 24K
chrII_mrna.txt.gz 2020-08-21 06:07 30K
chrIII_mrna.txt.gz 2020-08-21 06:07 40K
chrI_mrna.txt.gz 2020-05-07 17:18 40K
chrV_mrna.txt.gz 2018-01-07 06:38 40K
chrX_mrna.txt.gz 2020-08-21 06:07 47K
chrM_est.txt.gz 2016-06-05 09:18 50K
sangerToPfam.txt.gz 2004-06-07 07:35 69K
sangerToKim.txt.gz 2004-06-07 07:35 100K
orfToGene.txt.gz 2004-05-10 10:48 103K
sangerIsoforms.txt.gz 2004-06-07 07:35 106K
sangerToRefSeq.txt.gz 2004-06-07 07:35 110K
dmBlastTab.txt.gz 2007-08-30 18:04 111K
chrIV_mrna.txt.gz 2020-08-21 06:07 112K
picTar.txt.gz 2006-04-28 03:42 117K
hgBlastTab.txt.gz 2007-04-08 09:42 121K
gbLoaded.txt.gz 2020-08-21 06:44 217K
seq.txt.gz 2004-05-10 10:48 232K
rnBlastTab.txt.gz 2006-07-22 11:29 236K
mmBlastTab.txt.gz 2006-05-26 05:31 280K
chrX_rmsk.txt.gz 2004-05-10 10:48 289K
drBlastTab.txt.gz 2010-04-04 10:26 291K
all_mrna.txt.gz 2020-08-21 06:07 309K
sangerCanonical.txt.gz 2004-06-07 07:35 341K
chrII_rmsk.txt.gz 2004-05-10 10:45 347K
rnaCluster.txt.gz 2004-05-10 10:48 349K
chrIV_rmsk.txt.gz 2004-05-10 10:46 381K
gc5Base.txt.gz 2004-05-10 10:48 385K
chrIII_rmsk.txt.gz 2004-05-10 10:44 392K
chrI_rmsk.txt.gz 2004-05-10 10:46 409K
chrV_rmsk.txt.gz 2004-05-10 10:48 456K
wormP2P.txt.gz 2005-06-16 04:54 473K
sangerLinks.txt.gz 2004-05-27 05:10 539K
blastHg16KG.txt.gz 2004-09-28 10:05 600K
simpleRepeat.txt.gz 2004-05-10 10:48 822K
mrnaOrientInfo.txt.gz 2020-08-21 06:44 828K
chrX_chainSelf.txt.gz 2004-05-21 05:06 874K
chrX_wabaCbr.txt.gz 2004-05-10 10:48 1.0M
phastConsElements.txt.gz 2004-09-28 10:05 1.0M
chrI_chainSelf.txt.gz 2004-05-21 05:06 1.1M
twinscan.txt.gz 2004-05-10 10:48 1.1M
sangerGene.txt.gz 2004-05-27 05:10 1.2M
sangerGenefinder.txt.gz 2004-05-12 05:11 1.2M
chrII_chainSelf.txt.gz 2004-05-21 05:06 1.3M
chrIV_chainSelf.txt.gz 2004-05-21 05:06 1.3M
geneid.txt.gz 2005-03-26 05:08 1.3M
augustusGene.txt.gz 2015-07-26 11:22 1.3M
chrIII_chainSelf.txt.gz 2004-05-21 05:06 1.4M
chrX_intronEst.txt.gz 2016-06-05 09:18 1.4M
chrI_wabaCbr.txt.gz 2004-05-10 10:46 1.5M
chrV_chainSelf.txt.gz 2004-05-21 05:06 1.5M
xenoRefFlat.txt.gz 2020-08-21 06:44 1.5M
chrII_wabaCbr.txt.gz 2004-05-10 10:45 1.6M
axtNetCb1.txt.gz 2004-05-10 10:43 1.6M
c_briggsae_pwMaf.txt.gz 2004-09-28 10:05 1.6M
blatFr1.txt.gz 2004-05-10 10:43 1.6M
chrX_chainCb1.txt.gz 2004-05-10 10:48 1.7M
xenoRefSeqAli.txt.gz 2020-08-21 06:44 1.7M
xenoRefGene.txt.gz 2020-08-21 06:44 1.7M
chrIV_intronEst.txt.gz 2016-06-05 09:18 1.7M
chrV_intronEst.txt.gz 2016-06-05 09:18 1.8M
chrX_est.txt.gz 2016-06-05 09:18 1.8M
chrV_wabaCbr.txt.gz 2004-05-10 10:48 1.8M
refGene.txt.gz 2020-08-21 06:36 1.9M
chrIII_intronEst.txt.gz 2016-06-05 09:18 1.9M
chrII_intronEst.txt.gz 2016-06-05 09:18 2.1M
refFlat.txt.gz 2020-08-21 06:39 2.1M
chrI_intronEst.txt.gz 2016-06-05 09:18 2.1M
chrIII_wabaCbr.txt.gz 2004-05-10 10:44 2.2M
chrIV_est.txt.gz 2016-06-05 09:18 2.2M
chrV_est.txt.gz 2016-06-05 09:18 2.2M
phastCons.txt.gz 2004-09-28 10:05 2.3M
chrIII_est.txt.gz 2016-06-05 09:18 2.3M
chrII_est.txt.gz 2016-06-05 09:18 2.5M
chrIV_wabaCbr.txt.gz 2004-05-10 10:46 2.5M
refSeqAli.txt.gz 2020-08-21 06:44 2.7M
chrI_est.txt.gz 2016-06-05 09:18 2.9M
chrI_chainCb1.txt.gz 2004-05-10 10:46 3.2M
chrX_chainSelfLink.txt.gz 2004-05-21 05:06 3.3M
chrII_chainCb1.txt.gz 2004-05-10 10:44 3.5M
chrIII_chainCb1.txt.gz 2004-05-10 10:43 3.6M
chrIV_chainCb1.txt.gz 2004-05-10 10:45 3.8M
estOrientInfo.txt.gz 2016-06-05 09:18 4.0M
twinscanPep.txt.gz 2004-05-10 10:48 4.3M
netCb1.txt.gz 2004-05-10 10:48 4.4M
geneidPep.txt.gz 2005-03-26 05:08 4.8M
sangerPep.txt.gz 2004-05-27 05:10 4.8M
chrV_chainCb1.txt.gz 2004-05-10 10:47 5.2M
chrX_chainCb1Link.txt.gz 2004-05-10 10:48 5.3M
chrX_blastzCb1.txt.gz 2004-05-10 10:48 6.0M
chrIV_chainSelfLink.txt.gz 2004-05-21 05:05 7.0M
chrI_chainSelfLink.txt.gz 2004-05-21 05:05 7.9M
chrI_chainCb1Link.txt.gz 2004-06-01 07:23 8.2M
chrIII_chainCb1Link.txt.gz 2004-05-10 10:43 8.6M
chrII_chainCb1Link.txt.gz 2004-05-10 10:44 9.1M
chrII_chainSelfLink.txt.gz 2004-05-21 05:05 9.3M
chrI_blastzCb1.txt.gz 2004-05-10 10:46 9.6M
chrIV_chainCb1Link.txt.gz 2004-05-10 10:45 10M
chrV_chainSelfLink.txt.gz 2004-05-21 05:06 10M
chrII_blastzCb1.txt.gz 2004-05-10 10:44 10M
chrIII_blastzCb1.txt.gz 2004-05-10 10:43 10M
chrIII_chainSelfLink.txt.gz 2004-05-21 05:05 11M
chrIV_blastzCb1.txt.gz 2004-05-10 10:45 11M
chrV_chainCb1Link.txt.gz 2004-05-10 10:47 13M
all_est.txt.gz 2016-06-05 09:18 14M
chrV_blastzCb1.txt.gz 2004-05-10 10:47 15M
sangerBlastTab.txt.gz 2004-06-07 07:35 19M
kimExpDistance.txt.gz 2004-06-07 07:34 118M
wabaCbr.txt.gz 2004-05-10 10:51 130M