This directory contains the data files required as input to
the liftOver utility. This tool -- which requires a Linux
platform -- allows the mass conversion of coordinates from
one assembly to another. The executable file for the utility can
be downloaded from http://hgdownload.cse.ucsc.edu/admin/exe/
The file names reflect the assembly conversion data contained within
in the format <db1>To<db2>.over.chain.gz. For example, a file named
hg15Tohg16.zip file contains the liftOver data needed to convert hg15
(Human Build 33) coordinates to hg16 (Human Build 34). If no file is
available for the assembly in which you're interested, please send a
request to the genome mailing list (genome@soe.ucsc.edu) and we will
attempt to provide you with one.
To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the
appropriate goldenPath/<assembly>/liftOver directory. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
Name Last modified Size Description
Parent Directory -
danRer4ToDanRer3.over.chain.gz 31-May-2006 10:10 10M
danRer4ToDanRer5.over.chain.gz 21-Sep-2007 22:58 9.1M
danRer4ToFr1.over.chain.gz 29-Apr-2006 13:35 13M
danRer4ToFr2.over.chain.gz 29-Jan-2007 16:24 11M
danRer4ToGalGal3.over.chain.gz 30-May-2006 18:41 7.1M
danRer4ToGasAcu1.over.chain.gz 08-Dec-2006 16:22 21M
danRer4ToHg18.over.chain.gz 25-Apr-2006 08:54 5.6M
danRer4ToMm8.over.chain.gz 24-May-2006 14:14 5.2M
danRer4ToMonDom4.over.chain.gz 29-Apr-2006 13:38 5.5M
danRer4ToRn4.over.chain.gz 19-Jun-2006 22:36 6.0M
danRer4ToTetNig1.over.chain.gz 30-Apr-2006 10:40 10M
danRer4ToXenTro2.over.chain.gz 26-Apr-2006 08:08 16M
md5sum.txt 14-Jan-2008 16:36 700