This directory contains a dump of the UCSC genome annotation database for
the Apr. 2006 assembly of the D. melanogaster genome (dm3, BDGP Release 5).
The annotations were generated by UCSC and collaborators worldwide.

This assembly was produced by the Berkeley Drosophila Genome Project.
For more information on the D. melanogaster genome, see the release notes:
  http://www.fruitfly.org/sequence/release5genomic.shtml

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=dm3
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
To download a large file or multiple files from this directory, we recommend 
that you use ftp rather than downloading the files via our website. To do so: 
    ftp hgdownload.cse.ucsc.edu 
    user name: anonymous
    password: <your email address>
    go to the directory goldenPath/dm3/database

To download multiple files from the UNIX command line, use the "mget" command. 
    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 
Use the "prompt" command to toggle the interactive mode if you do not want 
to be prompted for each file that you download.

All the files and tables in this directory are freely usable for any purpose.

      Name                              Last modified      Size  Description
Parent Directory - all_bacends.sql 2007-07-11 09:52 2.1K all_bacends.txt.gz 2007-07-11 09:52 11M bacEndPairs.sql 2007-07-11 09:55 1.7K bacEndPairs.txt.gz 2007-07-11 09:55 385K bdgpExprLink.sql 2007-07-11 09:55 1.5K bdgpExprLink.txt.gz 2007-07-11 09:55 108K chr2LHet_chainAnoGam1.sql 2007-07-11 09:55 1.7K chr2LHet_chainAnoGam1.txt.gz 2007-07-11 09:55 28K chr2LHet_chainAnoGam1Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainAnoGam1Link.txt.gz 2007-07-11 09:55 351K chr2LHet_chainApiMel3.sql 2007-07-11 09:55 1.7K chr2LHet_chainApiMel3.txt.gz 2007-07-11 09:55 4.1K chr2LHet_chainApiMel3Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainApiMel3Link.txt.gz 2007-07-11 09:55 103K chr2LHet_chainDp3.sql 2007-07-11 09:55 1.7K chr2LHet_chainDp3.txt.gz 2007-07-11 09:55 22K chr2LHet_chainDp3Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDp3Link.txt.gz 2007-07-11 09:55 196K chr2LHet_chainDroAna2.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroAna2.txt.gz 2007-07-11 09:55 200K chr2LHet_chainDroAna2Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroAna2Link.txt.gz 2007-07-11 09:55 2.2M chr2LHet_chainDroEre1.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroEre1.txt.gz 2007-07-11 09:55 95K chr2LHet_chainDroEre1Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroEre1Link.txt.gz 2007-07-11 09:55 809K chr2LHet_chainDroPer1.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroPer1.txt.gz 2007-07-11 09:55 103K chr2LHet_chainDroPer1Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroPer1Link.txt.gz 2007-07-11 09:55 1.1M chr2LHet_chainDroSec1.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroSec1.txt.gz 2007-07-11 09:55 145K chr2LHet_chainDroSec1Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroSec1Link.txt.gz 2007-07-11 09:55 756K chr2LHet_chainDroSim1.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroSim1.txt.gz 2007-07-11 09:55 79K chr2LHet_chainDroSim1Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroSim1Link.txt.gz 2007-07-11 09:55 469K chr2LHet_chainDroYak2.sql 2007-07-11 09:55 1.7K chr2LHet_chainDroYak2.txt.gz 2007-07-11 09:55 155K chr2LHet_chainDroYak2Link.sql 2007-07-11 09:55 1.4K chr2LHet_chainDroYak2Link.txt.gz 2007-07-11 09:55 1.2M chr2LHet_gap.sql 2007-07-11 09:55 1.5K chr2LHet_gap.txt.gz 2007-07-11 09:55 117 chr2LHet_gold.sql 2007-07-11 09:55 1.6K chr2LHet_gold.txt.gz 2007-07-11 09:55 120 chr2LHet_rmsk.sql 2007-07-11 09:55 1.9K chr2LHet_rmsk.txt.gz 2007-07-11 09:55 9.8K chr2L_chainAnoGam1.sql 2007-07-11 09:55 1.7K chr2L_chainAnoGam1.txt.gz 2007-07-11 09:55 639K chr2L_chainAnoGam1Link.sql 2007-07-11 09:55 1.4K chr2L_chainAnoGam1Link.txt.gz 2007-07-11 09:55 4.6M chr2L_chainApiMel3.sql 2007-07-11 09:55 1.7K chr2L_chainApiMel3.txt.gz 2007-07-11 09:55 364K chr2L_chainApiMel3Link.sql 2007-07-11 09:55 1.4K chr2L_chainApiMel3Link.txt.gz 2007-07-11 09:55 2.9M chr2L_chainDp3.sql 2007-07-11 09:55 1.6K chr2L_chainDp3.txt.gz 2007-07-11 09:55 1.0M chr2L_chainDp3Link.sql 2007-07-11 09:55 1.4K chr2L_chainDp3Link.txt.gz 2007-07-11 09:55 9.3M chr2L_chainDroAna2.sql 2007-07-11 09:55 1.7K chr2L_chainDroAna2.txt.gz 2007-07-11 09:55 3.7M chr2L_chainDroAna2Link.sql 2007-07-11 09:55 1.4K chr2L_chainDroAna2Link.txt.gz 2007-07-11 09:56 31M chr2L_chainDroEre1.sql 2007-07-11 09:56 1.7K chr2L_chainDroEre1.txt.gz 2007-07-11 09:56 2.8M chr2L_chainDroEre1Link.sql 2007-07-11 09:56 1.4K chr2L_chainDroEre1Link.txt.gz 2007-07-11 09:57 19M chr2L_chainDroPer1.sql 2007-07-11 09:57 1.7K chr2L_chainDroPer1.txt.gz 2007-07-11 09:57 1.5M chr2L_chainDroPer1Link.sql 2007-07-11 09:57 1.4K chr2L_chainDroPer1Link.txt.gz 2007-07-11 09:57 16M chr2L_chainDroSec1.sql 2007-07-11 09:57 1.7K chr2L_chainDroSec1.txt.gz 2007-07-11 09:57 1.9M chr2L_chainDroSec1Link.sql 2007-07-11 09:57 1.4K chr2L_chainDroSec1Link.txt.gz 2007-07-11 09:57 11M chr2L_chainDroSim1.sql 2007-07-11 09:58 1.7K chr2L_chainDroSim1.txt.gz 2007-07-11 09:58 1.3M chr2L_chainDroSim1Link.sql 2007-07-11 09:58 1.4K chr2L_chainDroSim1Link.txt.gz 2007-07-11 09:58 8.4M chr2L_chainDroYak2.sql 2007-07-11 09:58 1.7K chr2L_chainDroYak2.txt.gz 2007-07-11 09:58 1.8M chr2L_chainDroYak2Link.sql 2007-07-11 09:58 1.4K chr2L_chainDroYak2Link.txt.gz 2007-07-11 09:58 15M chr2L_gap.sql 2007-07-11 09:58 1.5K chr2L_gap.txt.gz 2007-07-11 09:58 94 chr2L_gold.sql 2007-07-11 09:58 1.6K chr2L_gold.txt.gz 2007-07-11 09:58 115 chr2L_rmsk.sql 2007-07-11 09:58 1.8K chr2L_rmsk.txt.gz 2007-07-11 09:58 269K chr2RHet_chainAnoGam1.sql 2007-07-11 09:58 1.7K chr2RHet_chainAnoGam1.txt.gz 2007-07-11 09:58 195K chr2RHet_chainAnoGam1Link.sql 2007-07-11 09:58 1.4K chr2RHet_chainAnoGam1Link.txt.gz 2007-07-11 09:58 2.3M chr2RHet_chainApiMel3.sql 2007-07-11 09:58 1.7K chr2RHet_chainApiMel3.txt.gz 2007-07-11 09:58 21K chr2RHet_chainApiMel3Link.sql 2007-07-11 09:58 1.4K chr2RHet_chainApiMel3Link.txt.gz 2007-07-11 09:58 406K chr2RHet_chainDp3.sql 2007-07-11 09:58 1.7K chr2RHet_chainDp3.txt.gz 2007-07-11 09:58 226K chr2RHet_chainDp3Link.sql 2007-07-11 09:58 1.4K chr2RHet_chainDp3Link.txt.gz 2007-07-11 09:58 1.7M chr2RHet_chainDroAna2.sql 2007-07-11 09:58 1.7K chr2RHet_chainDroAna2.txt.gz 2007-07-11 09:58 1.6M chr2RHet_chainDroAna2Link.sql 2007-07-11 09:59 1.4K chr2RHet_chainDroAna2Link.txt.gz 2007-07-11 09:59 16M chr2RHet_chainDroEre1.sql 2007-07-11 09:59 1.7K chr2RHet_chainDroEre1.txt.gz 2007-07-11 09:59 919K chr2RHet_chainDroEre1Link.sql 2007-07-11 09:59 1.4K chr2RHet_chainDroEre1Link.txt.gz 2007-07-11 09:59 7.0M chr2RHet_chainDroPer1.sql 2007-07-11 09:59 1.7K chr2RHet_chainDroPer1.txt.gz 2007-07-11 09:59 942K chr2RHet_chainDroPer1Link.sql 2007-07-11 09:59 1.4K chr2RHet_chainDroPer1Link.txt.gz 2007-07-11 09:59 7.5M chr2RHet_chainDroSec1.sql 2007-07-11 09:59 1.7K chr2RHet_chainDroSec1.txt.gz 2007-07-11 09:59 1.8M chr2RHet_chainDroSec1Link.sql 2007-07-11 09:59 1.4K chr2RHet_rmsk.sql 2007-07-11 09:59 1.9K chr2RHet_rmsk.txt.gz 2007-07-11 09:59 94K chr2RHet_chainDroSec1Link.txt.gz 2007-07-11 10:00 7.9M chr2RHet_chainDroSim1.sql 2007-07-11 10:00 1.7K chr2RHet_chainDroSim1.txt.gz 2007-07-11 10:00 1.0M chr2RHet_chainDroSim1Link.sql 2007-07-11 10:00 1.4K chr2RHet_chainDroSim1Link.txt.gz 2007-07-11 10:00 5.3M chr2RHet_chainDroYak2.sql 2007-07-11 10:00 1.7K chr2RHet_chainDroYak2.txt.gz 2007-07-11 10:00 1.4M chr2RHet_chainDroYak2Link.sql 2007-07-11 10:00 1.4K chr2RHet_chainDroYak2Link.txt.gz 2007-07-11 10:00 11M seq.sql 2007-07-11 10:00 1.4K seq.txt.gz 2007-07-11 10:00 459K chr2RHet_gap.sql 2007-07-11 10:00 1.5K chr2RHet_gap.txt.gz 2007-07-11 10:00 418 chr2RHet_gold.sql 2007-07-11 10:00 1.6K chr2RHet_gold.txt.gz 2007-07-11 10:00 521 chr2R_chainAnoGam1.sql 2007-07-11 10:00 1.7K chr2R_chainAnoGam1.txt.gz 2007-07-11 10:00 590K chr2R_chainAnoGam1Link.sql 2007-07-11 10:00 1.4K chr2R_chainAnoGam1Link.txt.gz 2007-07-11 10:00 4.7M chr2R_chainApiMel3.sql 2007-07-11 10:00 1.7K chr2R_chainApiMel3.txt.gz 2007-07-11 10:00 222K chr2R_chainApiMel3Link.sql 2007-07-11 10:00 1.4K chr2R_chainApiMel3Link.txt.gz 2007-07-11 10:00 2.1M chr2R_chainDp3.sql 2007-07-11 10:00 1.6K chr2R_chainDp3.txt.gz 2007-07-11 10:00 740K chr2R_chainDroEre1Link.sql 2007-07-11 10:00 1.4K chr2R_chainDroEre1Link.txt.gz 2007-07-11 10:00 12M chr2R_chainDp3Link.sql 2007-07-11 10:01 1.4K extFile.sql 2007-07-11 10:01 1.3K extFile.txt.gz 2007-07-11 10:01 314 chr2R_chainDp3Link.txt.gz 2007-07-11 10:01 7.8M chr2R_chainDroAna2.sql 2007-07-11 10:01 1.7K chr2R_chainDroAna2.txt.gz 2007-07-11 10:01 2.8M chr2R_chainDroAna2Link.sql 2007-07-11 10:01 1.4K chr2R_chainDroAna2Link.txt.gz 2007-07-11 10:01 26M chr2R_chainDroEre1.sql 2007-07-11 10:01 1.7K chr2R_chainDroEre1.txt.gz 2007-07-11 10:01 1.6M chr2R_chainDroPer1.sql 2007-07-11 10:01 1.7K chr2R_chainDroPer1.txt.gz 2007-07-11 10:01 1.4M chr2R_chainDroPer1Link.sql 2007-07-11 10:02 1.4K chr2R_chainDroPer1Link.txt.gz 2007-07-11 10:02 15M chr2R_chainDroSec1.sql 2007-07-11 10:02 1.7K chr2R_chainDroSec1.txt.gz 2007-07-11 10:02 1.8M chr2R_chainDroSec1Link.sql 2007-07-11 10:02 1.4K chr2R_chainDroSec1Link.txt.gz 2007-07-11 10:02 9.9M chr2R_chainDroSim1.sql 2007-07-11 10:02 1.7K chr2R_chainDroSim1.txt.gz 2007-07-11 10:02 1.2M chr2R_chainDroSim1Link.sql 2007-07-11 10:02 1.4K chr2R_chainDroSim1Link.txt.gz 2007-07-11 10:02 7.7M chr2R_chainDroYak2.sql 2007-07-11 10:02 1.7K chr2R_chainDroYak2.txt.gz 2007-07-11 10:02 1.8M chr2R_chainDroYak2Link.sql 2007-07-11 10:02 1.4K chr2R_chainDroYak2Link.txt.gz 2007-07-11 10:03 15M chr2R_gap.sql 2007-07-11 10:03 1.5K chr2R_gap.txt.gz 2007-07-11 10:03 75 chr3LHet_chainDroAna2.sql 2007-07-11 10:03 1.7K chr3LHet_chainDroAna2.txt.gz 2007-07-11 10:03 1.9M chr2R_gold.sql 2007-07-11 10:03 1.6K chr2R_gold.txt.gz 2007-07-11 10:03 98 chr2R_rmsk.sql 2007-07-11 10:03 1.8K chr2R_rmsk.txt.gz 2007-07-11 10:03 266K chr3LHet_chainAnoGam1.sql 2007-07-11 10:03 1.7K chr3LHet_chainAnoGam1.txt.gz 2007-07-11 10:03 165K chr3LHet_chainAnoGam1Link.sql 2007-07-11 10:03 1.4K chr3LHet_chainAnoGam1Link.txt.gz 2007-07-11 10:03 1.8M chr3LHet_chainApiMel3.sql 2007-07-11 10:03 1.7K chr3LHet_chainApiMel3.txt.gz 2007-07-11 10:03 23K chr3LHet_chainApiMel3Link.sql 2007-07-11 10:03 1.4K chr3LHet_chainApiMel3Link.txt.gz 2007-07-11 10:03 486K chr3LHet_chainDp3.sql 2007-07-11 10:03 1.7K chr3LHet_chainDp3.txt.gz 2007-07-11 10:03 213K chr3LHet_chainDp3Link.sql 2007-07-11 10:03 1.4K chr3LHet_chainDp3Link.txt.gz 2007-07-11 10:03 1.6M chr3LHet_chainDroAna2Link.sql 2007-07-11 10:03 1.4K chr3LHet_chainDroAna2Link.txt.gz 2007-07-11 10:03 18M chr3LHet_chainDroEre1.sql 2007-07-11 10:03 1.7K chr3LHet_chainDroEre1.txt.gz 2007-07-11 10:03 1.0M chr3LHet_chainDroEre1Link.sql 2007-07-11 10:03 1.4K chr3LHet_chainDroEre1Link.txt.gz 2007-07-11 10:04 8.7M chr3LHet_chainDroPer1.sql 2007-07-11 10:04 1.7K chr3LHet_chainDroPer1.txt.gz 2007-07-11 10:04 960K chr3LHet_chainDroPer1Link.sql 2007-07-11 10:04 1.4K chr3LHet_chainDroPer1Link.txt.gz 2007-07-11 10:04 8.1M chr3LHet_chainDroSec1.sql 2007-07-11 10:04 1.7K chr3LHet_chainDroSec1.txt.gz 2007-07-11 10:04 1.4M chr3LHet_chainDroSec1Link.sql 2007-07-11 10:04 1.4K chr3LHet_chainDroSec1Link.txt.gz 2007-07-11 10:04 6.6M chr3LHet_chainDroSim1.sql 2007-07-11 10:04 1.7K chr3LHet_chainDroSim1.txt.gz 2007-07-11 10:04 780K chr3LHet_chainDroSim1Link.sql 2007-07-11 10:04 1.4K chr3LHet_gold.sql 2007-07-11 10:04 1.6K chr3LHet_gold.txt.gz 2007-07-11 10:04 408 chr3LHet_chainDroSim1Link.txt.gz 2007-07-11 10:04 4.5M chr3LHet_chainDroYak2.sql 2007-07-11 10:04 1.7K chr3LHet_chainDroYak2.txt.gz 2007-07-11 10:04 1.3M chr3LHet_chainDroYak2Link.sql 2007-07-11 10:04 1.4K chr3LHet_chainDroYak2Link.txt.gz 2007-07-11 10:04 10M chr3LHet_gap.sql 2007-07-11 10:05 1.5K chr3LHet_gap.txt.gz 2007-07-11 10:05 329 chr3LHet_rmsk.sql 2007-07-11 10:05 1.9K chr3LHet_rmsk.txt.gz 2007-07-11 10:05 84K chr3L_chainAnoGam1.sql 2007-07-11 10:05 1.7K chr3L_chainAnoGam1.txt.gz 2007-07-11 10:05 524K chr3L_chainAnoGam1Link.sql 2007-07-11 10:05 1.4K chr3L_chainAnoGam1Link.txt.gz 2007-07-11 10:05 4.3M chr3L_chainApiMel3.sql 2007-07-11 10:05 1.7K chr3L_chainApiMel3.txt.gz 2007-07-11 10:05 203K chr3L_chainApiMel3Link.sql 2007-07-11 10:05 1.4K chr3L_chainApiMel3Link.txt.gz 2007-07-11 10:05 2.4M chr3L_chainDp3.sql 2007-07-11 10:05 1.6K chr3L_chainDp3.txt.gz 2007-07-11 10:05 903K chr3L_chainDp3Link.sql 2007-07-11 10:05 1.4K chr3L_chainDp3Link.txt.gz 2007-07-11 10:05 9.3M chr3L_chainDroAna2.sql 2007-07-11 10:05 1.7K chr3L_chainDroAna2.txt.gz 2007-07-11 10:05 3.7M chr3L_chainDroAna2Link.sql 2007-07-11 10:05 1.4K chr3L_chainDroAna2Link.txt.gz 2007-07-11 10:05 33M chr3L_chainDroEre1.sql 2007-07-11 10:06 1.7K chr3L_chainDroEre1.txt.gz 2007-07-11 10:06 1.7M chr3L_chainDroEre1Link.sql 2007-07-11 10:06 1.4K chr3L_chainDroEre1Link.txt.gz 2007-07-11 10:06 13M chr3L_chainDroPer1.sql 2007-07-11 10:06 1.7K chr3L_chainDroPer1.txt.gz 2007-07-11 10:06 1.6M chr3L_chainDroPer1Link.sql 2007-07-11 10:06 1.4K chr3L_chainDroPer1Link.txt.gz 2007-07-11 10:06 17M chr3L_chainDroSec1.sql 2007-07-11 10:07 1.7K chr3L_chainDroSec1.txt.gz 2007-07-11 10:07 2.4M chr3L_chainDroSec1Link.sql 2007-07-11 10:07 1.4K chr3L_chainDroSec1Link.txt.gz 2007-07-11 10:07 13M chr3L_chainDroSim1.sql 2007-07-11 10:07 1.7K chr3L_chainDroSim1.txt.gz 2007-07-11 10:07 1.2M chr3L_chainDroSim1Link.sql 2007-07-11 10:07 1.4K chr3L_chainDroSim1Link.txt.gz 2007-07-11 10:07 8.0M chr3L_chainDroYak2.sql 2007-07-11 10:07 1.7K chr3L_chainDroYak2.txt.gz 2007-07-11 10:07 2.0M chr3L_chainDroYak2Link.sql 2007-07-11 10:07 1.4K chr3L_chainDroYak2Link.txt.gz 2007-07-11 10:07 17M chr3L_gap.sql 2007-07-11 10:08 1.5K chr3L_gap.txt.gz 2007-07-11 10:08 73 chr3L_gold.sql 2007-07-11 10:08 1.6K chr3L_gold.txt.gz 2007-07-11 10:08 97 chr3L_rmsk.sql 2007-07-11 10:08 1.8K chr3L_rmsk.txt.gz 2007-07-11 10:08 323K chr3RHet_chainAnoGam1.sql 2007-07-11 10:08 1.7K chr3RHet_chainAnoGam1.txt.gz 2007-07-11 10:08 164K chr3RHet_chainAnoGam1Link.sql 2007-07-11 10:08 1.4K chr3RHet_chainAnoGam1Link.txt.gz 2007-07-11 10:08 1.8M chr3RHet_chainApiMel3.sql 2007-07-11 10:08 1.7K chr3RHet_chainApiMel3.txt.gz 2007-07-11 10:08 15K chr3RHet_chainApiMel3Link.sql 2007-07-11 10:08 1.4K chr3RHet_chainApiMel3Link.txt.gz 2007-07-11 10:08 255K chr3RHet_chainDp3.sql 2007-07-11 10:08 1.7K chr3RHet_chainDp3.txt.gz 2007-07-11 10:08 207K chr3RHet_chainDp3Link.sql 2007-07-11 10:08 1.4K chr3RHet_chainDp3Link.txt.gz 2007-07-11 10:08 1.5M chr3RHet_chainDroAna2.sql 2007-07-11 10:08 1.7K chr3RHet_chainDroAna2.txt.gz 2007-07-11 10:08 1.5M chr3RHet_chainDroAna2Link.sql 2007-07-11 10:08 1.4K chr3RHet_chainDroAna2Link.txt.gz 2007-07-11 10:08 15M chr3RHet_chainDroEre1.sql 2007-07-11 10:08 1.7K chr3RHet_chainDroEre1.txt.gz 2007-07-11 10:08 804K chr3RHet_chainDroEre1Link.sql 2007-07-11 10:08 1.4K chr3RHet_chainDroEre1Link.txt.gz 2007-07-11 10:08 6.2M chr3RHet_chainDroPer1.sql 2007-07-11 10:08 1.7K chr3RHet_chainDroPer1.txt.gz 2007-07-11 10:08 812K chr3RHet_chainDroPer1Link.sql 2007-07-11 10:08 1.4K chr3RHet_chainDroPer1Link.txt.gz 2007-07-11 10:08 6.5M chr3RHet_chainDroSec1.sql 2007-07-11 10:09 1.7K chr3RHet_chainDroSec1.txt.gz 2007-07-11 10:09 1.3M chr3RHet_chainDroSec1Link.sql 2007-07-11 10:09 1.4K chr3RHet_rmsk.sql 2007-07-11 10:09 1.9K 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