This directory contains the Drosophila pseudoobscura Flybase 
Release 1.0 assembly (Nov. 2004).  
The annotations are from UCSC, Flybase and collaborators worldwide.

Files are updated nightly. The .txt.gz files contain the 
database tables in a tab-delimited format compressed with gzip.  
The .sql files contain the MySQL commands used to create the tables.  
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=dp3
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

If you plan to download a large file or multiple files from 
this directory, we recommend that you use ftp rather than 
downloading the files via our website. To do so, ftp to 
hgdownload.cse.ucsc.edu, then go to the directory 
goldenPath/dp3/database. To download multiple files, 
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory) 

All the tables in this directory are freely usable for any 
purpose.

      Name                              Last modified      Size  Description
Parent Directory - chr2_gap.txt.gz 2005-06-24 12:19 11K chr2_rmsk.txt.gz 2005-06-24 12:19 472K chr3_gap.txt.gz 2005-06-24 12:19 6.9K chr3_rmsk.txt.gz 2005-06-24 12:19 258K chr4_group1_gap.txt.gz 2005-06-24 12:19 2.4K chr4_group1_rmsk.txt.gz 2005-06-24 12:19 89K chr4_group2_gap.txt.gz 2005-06-24 12:19 805 chr4_group2_rmsk.txt.gz 2005-06-24 12:19 19K chr4_group3_gap.txt.gz 2005-06-24 12:19 4.6K chr4_group3_rmsk.txt.gz 2005-06-24 12:19 179K chr4_group4_gap.txt.gz 2005-06-24 12:19 3.3K chr4_group4_rmsk.txt.gz 2005-06-24 12:19 92K chr4_group5_gap.txt.gz 2005-06-24 12:19 861 chr4_group5_rmsk.txt.gz 2005-06-24 12:19 38K chrU_gap.txt.gz 2005-06-24 12:19 14K chrU_rmsk.txt.gz 2005-06-24 12:19 298K chrXL_group1a_gap.txt.gz 2005-06-24 12:19 5.7K chrXL_group1a_rmsk.txt.gz 2005-06-24 12:19 195K chrXL_group1e_gap.txt.gz 2005-06-24 12:19 7.0K chrXL_group1e_rmsk.txt.gz 2005-06-24 12:19 261K chrXL_group3a_gap.txt.gz 2005-06-24 12:19 1.9K chrXL_group3a_rmsk.txt.gz 2005-06-24 12:19 50K chrXL_group3b_gap.txt.gz 2005-06-24 12:19 417 chrXL_group3b_rmsk.txt.gz 2005-06-24 12:19 9.2K chrXR_group3a_gap.txt.gz 2005-06-24 12:19 1.0K chrXR_group3a_rmsk.txt.gz 2005-06-24 12:19 32K chrXR_group5_gap.txt.gz 2005-06-24 12:19 488 chrXR_group5_rmsk.txt.gz 2005-06-24 12:19 16K chrXR_group6_gap.txt.gz 2005-06-24 12:20 3.4K chrXR_group6_rmsk.txt.gz 2005-06-24 12:20 136K chrXR_group8_gap.txt.gz 2005-06-24 12:20 5.2K chromInfo.txt.gz 2005-06-24 12:20 209 chrXR_group8_rmsk.txt.gz 2005-06-24 12:20 198K chrXR_group9_gap.txt.gz 2005-06-24 12:20 4.1K chrXR_group9_rmsk.txt.gz 2005-06-24 12:20 148K fbGenscan.txt.gz 2005-06-24 12:20 868K flyBase2004Xref.txt.gz 2005-06-24 12:20 97K flyBaseGene.txt.gz 2005-06-24 12:20 402K flyBasePep.txt.gz 2005-06-24 12:20 2.9M gcPercent.txt.gz 2005-06-24 12:21 40K genewise.txt.gz 2005-06-24 12:21 546K genscan.txt.gz 2005-06-24 12:21 716K genscanPep.txt.gz 2005-06-24 12:21 4.7M history.txt.gz 2005-06-24 12:21 470 simpleRepeat.txt.gz 2005-06-24 12:22 1.4M twinscan.txt.gz 2005-06-24 12:22 622K blastDm2FB.txt.gz 2005-07-28 05:23 1.4M geneid.txt.gz 2005-09-23 04:49 723K gbDelete_tmp.txt.gz 2005-09-27 05:01 180K chr2_chainDm3.sql 2007-07-14 10:29 1.6K chr2_chainDm3.txt.gz 2007-07-14 10:29 853K chr2_chainDm3Link.sql 2007-07-14 10:29 1.4K chr2_chainDm3Link.txt.gz 2007-07-14 10:30 10M netDm3.sql 2007-07-14 10:30 2.2K netDm3.txt.gz 2007-07-14 10:30 7.6M chr3_chainDm3.sql 2007-07-14 10:30 1.6K chr3_chainDm3.txt.gz 2007-07-14 10:30 606K chr3_chainDm3Link.sql 2007-07-14 10:30 1.4K chr3_chainDm3Link.txt.gz 2007-07-14 10:30 6.6M chr4_group1_chainDm3.sql 2007-07-14 10:30 1.7K chr4_group1_chainDm3.txt.gz 2007-07-14 10:30 119K chr4_group1_chainDm3Link.sql 2007-07-14 10:30 1.4K chr4_group1_chainDm3Link.txt.gz 2007-07-14 10:30 1.4M chr4_group2_chainDm3.sql 2007-07-14 10:30 1.7K chr4_group2_chainDm3.txt.gz 2007-07-14 10:30 63K chr4_group2_chainDm3Link.sql 2007-07-14 10:30 1.4K chr4_group2_chainDm3Link.txt.gz 2007-07-14 10:30 514K chr4_group3_chainDm3.sql 2007-07-14 10:30 1.7K chr4_group3_chainDm3.txt.gz 2007-07-14 10:30 609K chr4_group3_chainDm3Link.sql 2007-07-14 10:30 1.4K chr4_group3_chainDm3Link.txt.gz 2007-07-14 10:30 4.1M chr4_group4_chainDm3.sql 2007-07-14 10:30 1.7K chr4_group4_chainDm3.txt.gz 2007-07-14 10:30 176K chr4_group4_chainDm3Link.sql 2007-07-14 10:30 1.4K chr4_group4_chainDm3Link.txt.gz 2007-07-14 10:30 1.9M chr4_group5_chainDm3.sql 2007-07-14 10:30 1.7K chr4_group5_chainDm3.txt.gz 2007-07-14 10:30 77K chr4_group5_chainDm3Link.sql 2007-07-14 10:30 1.4K chr4_group5_chainDm3Link.txt.gz 2007-07-14 10:30 713K chrU_chainDm3.sql 2007-07-14 10:30 1.6K chrU_chainDm3.txt.gz 2007-07-14 10:30 2.0M chrU_chainDm3Link.sql 2007-07-14 10:30 1.4K chrU_chainDm3Link.txt.gz 2007-07-14 10:31 14M chrXL_group1a_chainDm3.sql 2007-07-14 10:31 1.7K chrXL_group1a_chainDm3.txt.gz 2007-07-14 10:31 375K chrXL_group1a_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXL_group1a_chainDm3Link.txt.gz 2007-07-14 10:31 3.1M chrXL_group1e_chainDm3.sql 2007-07-14 10:31 1.7K chrXL_group1e_chainDm3.txt.gz 2007-07-14 10:31 557K chrXL_group1e_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXL_group1e_chainDm3Link.txt.gz 2007-07-14 10:31 4.0M chrXL_group3a_chainDm3.sql 2007-07-14 10:31 1.7K chrXL_group3a_chainDm3.txt.gz 2007-07-14 10:31 92K chrXL_group3a_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXL_group3a_chainDm3Link.txt.gz 2007-07-14 10:31 859K chrXL_group3b_chainDm3.sql 2007-07-14 10:31 1.7K chrXL_group3b_chainDm3.txt.gz 2007-07-14 10:31 18K chrXL_group3b_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXL_group3b_chainDm3Link.txt.gz 2007-07-14 10:31 146K chrXR_group3a_chainDm3.sql 2007-07-14 10:31 1.7K chrXR_group3a_chainDm3.txt.gz 2007-07-14 10:31 52K chrXR_group3a_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXR_group3a_chainDm3Link.txt.gz 2007-07-14 10:31 514K chrXR_group5_chainDm3.sql 2007-07-14 10:31 1.7K chrXR_group5_chainDm3.txt.gz 2007-07-14 10:31 19K chrXR_group5_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXR_group5_chainDm3Link.txt.gz 2007-07-14 10:31 246K chrXR_group6_chainDm3.sql 2007-07-14 10:31 1.7K chrXR_group6_chainDm3.txt.gz 2007-07-14 10:31 270K chrXR_group6_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXR_group6_chainDm3Link.txt.gz 2007-07-14 10:31 2.1M chrXR_group8_chainDm3.sql 2007-07-14 10:31 1.7K chrXR_group8_chainDm3.txt.gz 2007-07-14 10:31 292K chrXR_group8_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXR_group8_chainDm3Link.txt.gz 2007-07-14 10:31 3.0M chrXR_group9_chainDm3.sql 2007-07-14 10:31 1.7K chrXR_group9_chainDm3.txt.gz 2007-07-14 10:31 199K chrXR_group9_chainDm3Link.sql 2007-07-14 10:31 1.4K chrXR_group9_chainDm3Link.txt.gz 2007-07-14 10:31 2.1M blastDm2FB.sql 2013-10-01 12:48 1.3K chr2_gap.sql 2013-10-01 12:48 700 chr2_rmsk.sql 2013-10-01 12:48 1.0K chr3_gap.sql 2013-10-01 12:48 700 chr3_rmsk.sql 2013-10-01 12:48 1.0K chr4_group1_gap.sql 2013-10-01 12:48 714 chr4_group1_rmsk.sql 2013-10-01 12:48 1.1K chr4_group2_gap.sql 2013-10-01 12:48 714 chr4_group2_rmsk.sql 2013-10-01 12:48 1.1K chr4_group3_gap.sql 2013-10-01 12:48 714 chr4_group3_rmsk.sql 2013-10-01 12:48 1.1K chr4_group4_gap.sql 2013-10-01 12:48 714 chr4_group4_rmsk.sql 2013-10-01 12:48 1.1K chr4_group5_gap.sql 2013-10-01 12:48 714 chr4_group5_rmsk.sql 2013-10-01 12:48 1.1K chrU_gap.sql 2013-10-01 12:48 700 chrU_rmsk.sql 2013-10-01 12:48 1.0K chrXL_group1a_gap.sql 2013-10-01 12:48 718 chrXL_group1a_rmsk.sql 2013-10-01 12:48 1.1K chrXL_group1e_gap.sql 2013-10-01 12:48 718 chrXL_group1e_rmsk.sql 2013-10-01 12:48 1.1K chrXL_group3a_gap.sql 2013-10-01 12:48 718 chrXL_group3a_rmsk.sql 2013-10-01 12:48 1.1K chrXL_group3b_gap.sql 2013-10-01 12:48 718 chrXL_group3b_rmsk.sql 2013-10-01 12:48 1.1K chrXR_group3a_gap.sql 2013-10-01 12:48 718 chrXR_group3a_rmsk.sql 2013-10-01 12:48 1.1K chrXR_group5_gap.sql 2013-10-01 12:48 716 chrXR_group5_rmsk.sql 2013-10-01 12:48 1.1K chrXR_group6_gap.sql 2013-10-01 12:48 716 chrXR_group6_rmsk.sql 2013-10-01 12:48 1.1K chrXR_group8_gap.sql 2013-10-01 12:48 716 chrXR_group8_rmsk.sql 2013-10-01 12:48 1.1K chrXR_group9_gap.sql 2013-10-01 12:48 716 chrXR_group9_rmsk.sql 2013-10-01 12:48 1.1K chromInfo.sql 2013-10-01 12:48 392 fbGenscan.sql 2013-10-01 12:48 1.0K flyBase2004Xref.sql 2013-10-01 12:48 730 flyBaseGene.sql 2013-10-01 12:48 752 flyBasePep.sql 2013-10-01 12:48 326 gbDelete_tmp.sql 2013-10-01 12:48 322 gcPercent.sql 2013-10-01 12:48 506 geneid.sql 2013-10-01 12:48 1.0K genewise.sql 2013-10-01 12:48 746 genscan.sql 2013-10-01 12:48 744 genscanPep.sql 2013-10-01 12:48 326 history.sql 2013-10-01 12:48 533 simpleRepeat.sql 2013-10-01 12:48 1.1K twinscan.sql 2013-10-01 12:48 746 grp.sql 2014-03-02 03:40 1.4K grp.txt.gz 2014-03-02 03:40 223 augustusGene.sql 2015-07-26 12:19 1.9K augustusGene.txt.gz 2015-07-26 12:19 770K microsat.sql 2015-08-23 14:22 1.5K microsat.txt.gz 2015-08-23 14:22 8.7K xenoMrna.sql 2016-02-21 13:53 2.1K xenoMrna.txt.gz 2016-02-21 13:54 89M chr4_group1_mrna.sql 2016-05-15 08:25 2.1K chr4_group1_mrna.txt.gz 2016-05-15 08:25 215 chr4_group4_intronEst.sql 2016-05-15 08:25 2.1K chr4_group4_intronEst.txt.gz 2016-05-15 08:25 66K chrU_mrna.sql 2016-05-15 08:25 2.1K chrU_mrna.txt.gz 2016-05-15 08:25 681 chr4_group2_intronEst.sql 2016-05-15 08:25 2.1K chr4_group2_intronEst.txt.gz 2016-05-15 08:25 7.4K chr4_group2_mrna.sql 2016-05-15 08:25 2.1K chr4_group2_mrna.txt.gz 2016-05-15 08:25 41 chr4_group4_mrna.sql 2016-05-15 08:25 2.1K chr4_group4_mrna.txt.gz 2016-05-15 08:25 221 chr4_group5_est.sql 2016-05-15 08:25 2.1K chr4_group5_est.txt.gz 2016-05-15 08:25 39K chr4_group5_intronEst.sql 2016-05-15 08:25 2.1K chr4_group5_intronEst.txt.gz 2016-05-15 08:25 23K chr4_group5_mrna.sql 2016-05-15 08:25 2.1K chr4_group5_mrna.txt.gz 2016-05-15 08:25 41 chrXL_group1a_intronEst.sql 2016-05-15 08:25 2.1K chrXL_group1a_intronEst.txt.gz 2016-05-15 08:25 89K chrXL_group3a_intronEst.sql 2016-05-15 08:25 2.1K chrXL_group3a_intronEst.txt.gz 2016-05-15 08:25 21K chrXL_group3a_mrna.sql 2016-05-15 08:25 2.1K chrXL_group3a_mrna.txt.gz 2016-05-15 08:25 155 chrXL_group3b_est.sql 2016-05-15 08:25 2.1K chrXL_group3b_est.txt.gz 2016-05-15 08:25 3.5K chrXL_group3b_intronEst.sql 2016-05-15 08:25 2.1K chrXL_group3b_intronEst.txt.gz 2016-05-15 08:25 1.5K chrXL_group3b_mrna.sql 2016-05-15 08:25 2.1K chrXL_group3b_mrna.txt.gz 2016-05-15 08:25 150 chrXR_group3a_est.sql 2016-05-15 08:25 2.1K chrXR_group3a_est.txt.gz 2016-05-15 08:25 44K chrXR_group5_est.sql 2016-05-15 08:25 2.1K chrXR_group5_est.txt.gz 2016-05-15 08:25 13K chrXL_group1e_mrna.sql 2016-05-15 08:25 2.1K chrXL_group1e_mrna.txt.gz 2016-05-15 08:25 701 chrXR_group3a_intronEst.sql 2016-05-15 08:25 2.1K chrXR_group3a_intronEst.txt.gz 2016-05-15 08:25 30K chrXR_group3a_mrna.sql 2016-05-15 08:25 2.1K chrXR_group3a_mrna.txt.gz 2016-05-15 08:25 107 chrXR_group5_intronEst.sql 2016-05-15 08:25 2.1K chrXR_group5_intronEst.txt.gz 2016-05-15 08:25 8.0K chrXR_group5_mrna.sql 2016-05-15 08:25 2.1K chrXR_group5_mrna.txt.gz 2016-05-15 08:25 42 chrXR_group6_intronEst.sql 2016-05-15 08:25 2.1K chrXR_group6_intronEst.txt.gz 2016-05-15 08:25 60K chrXR_group9_intronEst.sql 2016-05-15 08:25 2.1K chrXR_group9_intronEst.txt.gz 2016-05-15 08:25 55K chrXR_group9_mrna.sql 2016-05-15 08:25 2.1K chrXR_group9_mrna.txt.gz 2016-05-15 08:25 250 chr2_intronEst.sql 2016-06-05 10:02 2.1K chrU_intronEst.sql 2016-06-05 10:02 2.1K chrU_intronEst.txt.gz 2016-06-05 10:02 40K chr2_est.sql 2016-06-05 10:02 2.1K chr2_est.txt.gz 2016-06-05 10:02 566K chr2_intronEst.txt.gz 2016-06-05 10:02 370K chr3_est.sql 2016-06-05 10:02 2.1K chr3_est.txt.gz 2016-06-05 10:02 383K chr3_intronEst.sql 2016-06-05 10:02 2.1K chr3_intronEst.txt.gz 2016-06-05 10:02 245K chr4_group1_est.sql 2016-06-05 10:02 2.1K chr4_group1_est.txt.gz 2016-06-05 10:02 59K chr4_group1_intronEst.sql 2016-06-05 10:02 2.1K chr4_group1_intronEst.txt.gz 2016-06-05 10:02 36K chr4_group2_est.sql 2016-06-05 10:02 2.1K chr4_group2_est.txt.gz 2016-06-05 10:02 15K chr4_group4_est.sql 2016-06-05 10:02 2.1K chr4_group4_est.txt.gz 2016-06-05 10:02 93K chrXL_group1a_est.sql 2016-06-05 10:02 2.1K chrXL_group1a_est.txt.gz 2016-06-05 10:02 138K chrXL_group1e_intronEst.sql 2016-06-05 10:02 2.1K chrXL_group1e_intronEst.txt.gz 2016-06-05 10:02 122K chrXR_group6_est.sql 2016-06-05 10:02 2.1K chrXR_group6_est.txt.gz 2016-06-05 10:02 90K chrXR_group8_est.sql 2016-06-05 10:02 2.1K chrXR_group8_est.txt.gz 2016-06-05 10:02 144K chrXR_group8_intronEst.sql 2016-06-05 10:02 2.1K chrXR_group8_intronEst.txt.gz 2016-06-05 10:02 92K chrXR_group8_mrna.sql 2016-06-05 10:02 2.1K chrXR_group8_mrna.txt.gz 2016-06-05 10:02 2.0K chrXR_group9_est.sql 2016-06-05 10:02 2.1K chrXR_group9_est.txt.gz 2016-06-05 10:02 91K estOrientInfo.sql 2016-06-05 10:02 1.8K estOrientInfo.txt.gz 2016-06-05 10:02 362K all_est.sql 2016-06-05 10:02 2.1K chr4_group3_intronEst.sql 2016-06-05 10:02 2.1K chr4_group3_intronEst.txt.gz 2016-06-05 10:02 98K all_est.txt.gz 2016-06-05 10:02 2.1M chr4_group3_est.sql 2016-06-05 10:02 2.1K chr4_group3_est.txt.gz 2016-06-05 10:02 156K chrU_est.sql 2016-06-05 10:02 2.1K chrU_est.txt.gz 2016-06-05 10:02 102K chrXL_group1e_est.sql 2016-06-05 10:02 2.1K chrXL_group1e_est.txt.gz 2016-06-05 10:02 189K chrXL_group3a_est.sql 2016-06-05 10:02 2.1K chrXL_group3a_est.txt.gz 2016-06-05 10:02 28K chr2_mrna.sql 2016-09-18 07:51 2.1K chr2_mrna.txt.gz 2016-09-18 07:51 1.4K chr4_group3_mrna.sql 2016-09-18 07:51 2.1K chr4_group3_mrna.txt.gz 2016-09-18 07:51 707 chrXL_group1a_mrna.sql 2016-09-18 07:51 2.1K chrXL_group1a_mrna.txt.gz 2016-09-18 07:51 943 chrXR_group6_mrna.sql 2016-09-18 07:51 2.1K chrXR_group6_mrna.txt.gz 2016-09-18 07:51 620 all_mrna.sql 2017-10-22 06:27 2.1K all_mrna.txt.gz 2017-10-22 06:27 8.1K chr3_mrna.sql 2017-10-22 06:27 2.1K chr3_mrna.txt.gz 2017-10-22 06:27 816 mrnaOrientInfo.sql 2017-10-22 06:27 1.8K mrnaOrientInfo.txt.gz 2017-10-22 06:27 2.2K xenoRefGene.sql 2020-08-19 00:44 1.9K xenoRefGene.txt.gz 2020-08-19 00:44 7.8M xenoRefFlat.sql 2020-08-19 00:44 1.7K xenoRefFlat.txt.gz 2020-08-19 00:44 7.1M xenoRefSeqAli.sql 2020-08-19 00:44 2.1K xenoRefSeqAli.txt.gz 2020-08-19 00:44 7.1M gbLoaded.sql 2020-08-19 00:44 1.6K gbLoaded.txt.gz 2020-08-19 00:44 43K trackDb_pushedout.sql 2021-08-02 14:24 2.1K trackDb_pushedout.txt.gz 2021-08-02 14:24 18K hgFindSpec_pushedout.sql 2021-08-02 14:24 1.8K hgFindSpec_pushedout.txt.gz 2021-08-02 14:24 940 trackDb.sql 2023-03-28 13:48 2.1K trackDb.txt.gz 2023-03-28 13:48 21K hgFindSpec.sql 2023-03-28 13:48 1.8K hgFindSpec.txt.gz 2023-03-28 13:48 1.0K tableDescriptions.sql 2024-02-24 02:03 1.4K tableDescriptions.txt.gz 2024-02-24 02:03 4.7K tableList.sql 2024-02-25 03:40 1.6K tableList.txt.gz 2024-02-25 03:40 8.1K bigFiles.sql 2024-02-25 03:40 1.4K bigFiles.txt.gz 2024-02-25 03:40 33