This directory contains the Drosophila ananassae 15 July 2004 assembly
from TIGR. The annotations were generated by UCSC and collaborators
worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=droAna1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/droAna1/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any
purpose. The D. ananassae data have been freely provided by TIGR before
publication for use in the UCSC Genome Browser with the following
understanding:
1. The data may be freely downloaded, used in analyses, and repackaged in
databases.
2. Users are free to use the data in scientific papers analyzing particular
genes and regions, provided that the TIGR is properly acknowledged.
3. TIGR reserves the right to publish the initial large-scale analyses of
the dataset, including large-scale identification of regions of
evolutionary conservation and large-scale genomic assembly.
4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
all_mrna.sql 13-Jun-2017 16:33 2.1K
all_mrna.txt.gz 13-Jun-2017 16:33 2.7K
augustusGene.sql 26-Jul-2015 12:19 1.9K
augustusGene.txt.gz 26-Jul-2015 12:19 760K
bigFiles.sql 23-Jul-2017 04:09 1.4K
bigFiles.txt.gz 23-Jul-2017 04:09 33
blastDm2FB.sql 01-Oct-2013 12:48 1.3K
blastDm2FB.txt.gz 28-Jul-2005 05:23 1.3M
chainDm2.sql 01-Oct-2013 12:48 878
chainDm2.txt.gz 19-Jan-2006 05:57 11M
chainDm2Link.sql 01-Oct-2013 12:48 577
chainDm2Link.txt.gz 19-Jan-2006 05:57 84M
chromInfo.sql 01-Oct-2013 12:48 396
chromInfo.txt.gz 13-Dec-2004 17:38 62K
gap.sql 01-Oct-2013 12:48 722
gap.txt.gz 13-Dec-2004 17:38 146K
gbDelete_tmp.sql 01-Oct-2013 12:48 326
gbDelete_tmp.txt.gz 04-Jan-2006 06:06 159K
gbLoaded.sql 09-Jul-2017 08:47 1.6K
gbLoaded.txt.gz 09-Jul-2017 08:47 5.1K
gcPercent.sql 01-Oct-2013 12:48 546
gcPercent.txt.gz 13-Dec-2004 17:39 96K
geneid.sql 01-Oct-2013 12:48 1.0K
geneid.txt.gz 23-Sep-2005 04:49 1.0M
genscan.sql 01-Oct-2013 12:48 748
genscan.txt.gz 09-Jan-2005 04:35 833K
genscanPep.sql 01-Oct-2013 12:48 330
genscanPep.txt.gz 13-Dec-2004 17:39 5.3M
grp.sql 02-Mar-2014 03:40 1.4K
grp.txt.gz 02-Mar-2014 03:40 223
hgFindSpec.sql 12-Feb-2017 14:21 1.7K
hgFindSpec.txt.gz 12-Feb-2017 14:21 534
history.sql 01-Oct-2013 12:48 537
history.txt.gz 13-Dec-2004 17:39 238
microsat.sql 23-Aug-2015 14:28 1.5K
microsat.txt.gz 23-Aug-2015 14:28 1.4K
mrnaOrientInfo.sql 13-Jun-2017 16:33 1.8K
mrnaOrientInfo.txt.gz 13-Jun-2017 16:33 736
netDm2.sql 01-Oct-2013 12:48 1.3K
netDm2.txt.gz 19-Jan-2006 05:58 7.5M
rmsk.sql 01-Oct-2013 12:48 1.1K
rmsk.txt.gz 13-Dec-2004 17:40 3.2M
simpleRepeat.sql 01-Oct-2013 12:48 1.1K
simpleRepeat.txt.gz 13-Dec-2004 17:40 1.4M
tableDescriptions.sql 23-Jul-2017 04:09 1.4K
tableDescriptions.txt.gz 23-Jul-2017 04:09 3.5K
tableList.sql 23-Jul-2017 04:09 1.5K
tableList.txt.gz 23-Jul-2017 04:09 1.9K
trackDb.sql 12-Feb-2017 14:20 2.0K
trackDb.txt.gz 12-Feb-2017 14:20 11K
xenoMrna.sql 21-Feb-2016 13:56 2.4K
xenoMrna.txt.gz 21-Feb-2016 13:56 116M
xenoRefFlat.sql 09-Jul-2017 08:47 1.7K
xenoRefFlat.txt.gz 09-Jul-2017 08:47 10M
xenoRefGene.sql 09-Jul-2017 08:47 1.9K
xenoRefGene.txt.gz 09-Jul-2017 08:47 12M
xenoRefSeqAli.sql 09-Jul-2017 08:47 2.1K
xenoRefSeqAli.txt.gz 09-Jul-2017 08:47 11M