This directory contains the Drosophila ananassae 15 July 2004 assembly
from TIGR. The annotations were generated by UCSC and collaborators
worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=droAna1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from
this directory, we recommend that you use ftp rather than
downloading the files via our website. To do so, ftp to
hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/droAna1/database. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any
purpose. The D. ananassae data have been freely provided by TIGR before
publication for use in the UCSC Genome Browser with the following
understanding:
1. The data may be freely downloaded, used in analyses, and repackaged in
databases.
2. Users are free to use the data in scientific papers analyzing particular
genes and regions, provided that the TIGR is properly acknowledged.
3. TIGR reserves the right to publish the initial large-scale analyses of
the dataset, including large-scale identification of regions of
evolutionary conservation and large-scale genomic assembly.
4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 23-Jul-2017 04:09 33
grp.txt.gz 02-Mar-2014 03:40 223
history.txt.gz 13-Dec-2004 17:39 238
gbDelete_tmp.sql 01-Oct-2013 12:48 326
genscanPep.sql 01-Oct-2013 12:48 330
chromInfo.sql 01-Oct-2013 12:48 396
hgFindSpec.txt.gz 12-Feb-2017 14:21 534
history.sql 01-Oct-2013 12:48 537
gcPercent.sql 01-Oct-2013 12:48 546
chainDm2Link.sql 01-Oct-2013 12:48 577
gap.sql 01-Oct-2013 12:48 722
mrnaOrientInfo.txt.gz 13-Jun-2017 16:33 736
genscan.sql 01-Oct-2013 12:48 748
chainDm2.sql 01-Oct-2013 12:48 878
geneid.sql 01-Oct-2013 12:48 1.0K
rmsk.sql 01-Oct-2013 12:48 1.1K
simpleRepeat.sql 01-Oct-2013 12:48 1.1K
netDm2.sql 01-Oct-2013 12:48 1.3K
blastDm2FB.sql 01-Oct-2013 12:48 1.3K
bigFiles.sql 23-Jul-2017 04:09 1.4K
microsat.txt.gz 23-Aug-2015 14:28 1.4K
grp.sql 02-Mar-2014 03:40 1.4K
tableDescriptions.sql 23-Jul-2017 04:09 1.4K
microsat.sql 23-Aug-2015 14:28 1.5K
tableList.sql 23-Jul-2017 04:09 1.5K
gbLoaded.sql 09-Jul-2017 08:47 1.6K
xenoRefFlat.sql 09-Jul-2017 08:47 1.7K
hgFindSpec.sql 12-Feb-2017 14:21 1.7K
mrnaOrientInfo.sql 13-Jun-2017 16:33 1.8K
xenoRefGene.sql 09-Jul-2017 08:47 1.9K
augustusGene.sql 26-Jul-2015 12:19 1.9K
tableList.txt.gz 23-Jul-2017 04:09 1.9K
trackDb.sql 12-Feb-2017 14:20 2.0K
all_mrna.sql 13-Jun-2017 16:33 2.1K
xenoRefSeqAli.sql 09-Jul-2017 08:47 2.1K
xenoMrna.sql 21-Feb-2016 13:56 2.4K
all_mrna.txt.gz 13-Jun-2017 16:33 2.7K
tableDescriptions.txt.gz 23-Jul-2017 04:09 3.5K
gbLoaded.txt.gz 09-Jul-2017 08:47 5.1K
trackDb.txt.gz 12-Feb-2017 14:20 11K
chromInfo.txt.gz 13-Dec-2004 17:38 62K
gcPercent.txt.gz 13-Dec-2004 17:39 96K
gap.txt.gz 13-Dec-2004 17:38 146K
gbDelete_tmp.txt.gz 04-Jan-2006 06:06 159K
augustusGene.txt.gz 26-Jul-2015 12:19 760K
genscan.txt.gz 09-Jan-2005 04:35 833K
geneid.txt.gz 23-Sep-2005 04:49 1.0M
blastDm2FB.txt.gz 28-Jul-2005 05:23 1.3M
simpleRepeat.txt.gz 13-Dec-2004 17:40 1.4M
rmsk.txt.gz 13-Dec-2004 17:40 3.2M
genscanPep.txt.gz 13-Dec-2004 17:39 5.3M
netDm2.txt.gz 19-Jan-2006 05:58 7.5M
xenoRefFlat.txt.gz 09-Jul-2017 08:47 10M
xenoRefSeqAli.txt.gz 09-Jul-2017 08:47 11M
chainDm2.txt.gz 19-Jan-2006 05:57 11M
xenoRefGene.txt.gz 09-Jul-2017 08:47 12M
chainDm2Link.txt.gz 19-Jan-2006 05:57 84M
xenoMrna.txt.gz 21-Feb-2016 13:56 116M