This directory contains the Drosophila mojavensis 11 August 2004 assembly
from Agencourt Bioscience Corporation. The annotations were generated
by UCSC and collaborators worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=droMoj1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/droMoj1/database. To download multiple files, use the "mget"
command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
The D. mojavensis data have been freely provided by Agencourt Bioscience
Corporation before publication for use in the UCSC Genome Browser with the
following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged in
databases.
2. Users are free to use the data in scientific papers analyzing particular
genes and regions, provided that the Agencourt is properly acknowledged.
3. Agencourt reserves the right to publish the initial large-scale analyses
of the dataset, including large-scale identification of regions of
evolutionary conservation and large-scale genomic assembly.
4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
all_mrna.sql 13-Jun-2017 16:35 2.1K
all_mrna.txt.gz 13-Jun-2017 16:35 2.3K
augustusGene.sql 26-Jul-2015 12:37 1.9K
augustusGene.txt.gz 26-Jul-2015 12:37 712K
bigFiles.sql 23-Jul-2017 04:09 1.4K
bigFiles.txt.gz 23-Jul-2017 04:09 33
blastDm2FB.sql 01-Oct-2013 12:48 1.3K
blastDm2FB.txt.gz 28-Jul-2005 05:23 1.3M
chainDm2.sql 01-Oct-2013 12:48 878
chainDm2.txt.gz 19-Jan-2006 05:58 6.5M
chainDm2Link.sql 01-Oct-2013 12:48 577
chainDm2Link.txt.gz 19-Jan-2006 05:59 61M
chromInfo.sql 01-Oct-2013 12:48 396
chromInfo.txt.gz 13-Dec-2004 15:27 127K
gap.sql 01-Oct-2013 12:48 722
gap.txt.gz 13-Dec-2004 15:27 28
gbDelete_tmp.sql 01-Oct-2013 12:48 326
gbDelete_tmp.txt.gz 04-Jan-2006 06:06 159K
gbLoaded.sql 09-Jul-2017 08:50 1.6K
gbLoaded.txt.gz 09-Jul-2017 08:50 5.3K
gcPercent.sql 01-Oct-2013 12:48 546
gcPercent.txt.gz 13-Dec-2004 15:28 151K
geneid.sql 01-Oct-2013 12:48 1.0K
geneid.txt.gz 23-Sep-2005 04:49 1.4M
genscan.sql 01-Oct-2013 12:48 748
genscan.txt.gz 09-Jan-2005 04:35 869K
genscanPep.sql 01-Oct-2013 12:48 330
genscanPep.txt.gz 13-Dec-2004 15:28 5.1M
grp.sql 02-Mar-2014 03:40 1.4K
grp.txt.gz 02-Mar-2014 03:40 223
hgFindSpec.sql 12-Feb-2017 14:31 1.7K
hgFindSpec.txt.gz 12-Feb-2017 14:31 539
history.sql 01-Oct-2013 12:48 537
history.txt.gz 13-Dec-2004 15:28 230
microsat.sql 23-Aug-2015 14:52 1.5K
microsat.txt.gz 23-Aug-2015 14:52 33K
mrnaOrientInfo.sql 13-Jun-2017 16:35 1.8K
mrnaOrientInfo.txt.gz 13-Jun-2017 16:35 676
netDm2.sql 01-Oct-2013 12:48 1.3K
netDm2.txt.gz 19-Jan-2006 06:00 8.9M
rmsk.sql 01-Oct-2013 12:48 1.1K
rmsk.txt.gz 13-Dec-2004 15:28 6.8M
simpleRepeat.sql 01-Oct-2013 12:48 1.1K
simpleRepeat.txt.gz 13-Dec-2004 15:28 2.6M
tableDescriptions.sql 23-Jul-2017 04:09 1.4K
tableDescriptions.txt.gz 23-Jul-2017 04:09 3.5K
tableList.sql 23-Jul-2017 04:09 1.5K
tableList.txt.gz 23-Jul-2017 04:09 1.9K
trackDb.sql 12-Feb-2017 14:30 2.0K
trackDb.txt.gz 12-Feb-2017 14:30 11K
xenoMrna.sql 21-Feb-2016 14:20 2.4K
xenoMrna.txt.gz 21-Feb-2016 14:20 119M
xenoRefFlat.sql 09-Jul-2017 08:49 1.7K
xenoRefFlat.txt.gz 09-Jul-2017 08:50 9.3M
xenoRefGene.sql 09-Jul-2017 08:49 1.9K
xenoRefGene.txt.gz 09-Jul-2017 08:49 10M
xenoRefSeqAli.sql 09-Jul-2017 08:50 2.1K
xenoRefSeqAli.txt.gz 09-Jul-2017 08:50 10M