This directory contains a dump of the annotation database for
the Release 1.0 assembly of the Drosophila simulans genome
(droSim1, Apr. 2005) produced by the Genome Sequencing Center
at the Washington University St. Louis School of Medicine. The
annotations were generated by UCSC and collaborators worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=droSim1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/droSim1/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory -
chr2L_gap.txt.gz 10-Jun-2005 15:56 22K
chr2L_gold.txt.gz 10-Jun-2005 15:56 81K
chr2L_random_gap.txt.gz 10-Jun-2005 15:56 3.0K
chr2L_random_gold.txt.gz 10-Jun-2005 15:56 4.8K
chr2L_random_rmsk.txt.gz 10-Jun-2005 15:56 8.6K
chr2L_rmsk.txt.gz 10-Jun-2005 15:56 224K
chr2R_gap.txt.gz 10-Jun-2005 15:56 21K
chr2R_gold.txt.gz 10-Jun-2005 15:56 80K
chr2R_random_gap.txt.gz 10-Jun-2005 15:56 10K
chr2R_random_gold.txt.gz 10-Jun-2005 15:56 17K
chr2R_random_rmsk.txt.gz 10-Jun-2005 15:56 37K
chr2R_rmsk.txt.gz 10-Jun-2005 15:56 198K
chr2h_random_gap.txt.gz 10-Jun-2005 15:56 7.1K
chr2h_random_gold.txt.gz 10-Jun-2005 15:56 11K
chr2h_random_rmsk.txt.gz 10-Jun-2005 15:56 109K
chr3L_gap.txt.gz 10-Jun-2005 15:56 23K
chr3L_gold.txt.gz 10-Jun-2005 15:56 88K
chr3L_random_gap.txt.gz 10-Jun-2005 15:56 3.7K
chr3L_random_gold.txt.gz 10-Jun-2005 15:56 6.4K
chr3L_random_rmsk.txt.gz 10-Jun-2005 15:56 10K
chr3L_rmsk.txt.gz 10-Jun-2005 15:56 250K
chr3R_gap.txt.gz 10-Jun-2005 15:56 25K
chr3R_gold.txt.gz 10-Jun-2005 15:56 104K
chr3R_random_gap.txt.gz 10-Jun-2005 15:56 4.7K
chr3R_random_gold.txt.gz 10-Jun-2005 15:56 7.8K
chr3R_random_rmsk.txt.gz 10-Jun-2005 15:56 13K
chr3R_rmsk.txt.gz 10-Jun-2005 15:56 264K
chr3h_random_gap.txt.gz 10-Jun-2005 15:56 3.5K
chr3h_random_gold.txt.gz 10-Jun-2005 15:56 5.1K
chr3h_random_rmsk.txt.gz 10-Jun-2005 15:56 51K
chr4_gap.txt.gz 10-Jun-2005 15:56 1.9K
chr4_gold.txt.gz 10-Jun-2005 15:56 5.4K
chr4_random_gap.txt.gz 10-Jun-2005 15:56 456
chr4_random_gold.txt.gz 10-Jun-2005 15:56 952
chr4_random_rmsk.txt.gz 10-Jun-2005 15:56 3.0K
chr4_rmsk.txt.gz 10-Jun-2005 15:56 25K
chrM_gap.txt.gz 10-Jun-2005 15:56 33
chrM_rmsk.txt.gz 10-Jun-2005 15:56 1.0K
chrU_gap.txt.gz 10-Jun-2005 15:57 94K
chrU_gold.txt.gz 10-Jun-2005 15:57 136K
chrU_rmsk.txt.gz 10-Jun-2005 15:57 533K
chrX_gap.txt.gz 10-Jun-2005 15:57 30K
chrX_gold.txt.gz 10-Jun-2005 15:57 99K
chrX_random_gap.txt.gz 10-Jun-2005 15:57 20K
chrX_random_gold.txt.gz 10-Jun-2005 15:57 35K
chrX_random_rmsk.txt.gz 10-Jun-2005 15:57 75K
chrX_rmsk.txt.gz 10-Jun-2005 15:57 248K
chrXh_random_gap.txt.gz 10-Jun-2005 15:57 300
chrXh_random_gold.txt.gz 10-Jun-2005 15:57 372
chrXh_random_rmsk.txt.gz 10-Jun-2005 15:57 2.1K
chrYh_random_gap.txt.gz 10-Jun-2005 15:57 379
chrYh_random_gold.txt.gz 10-Jun-2005 15:57 491
chrYh_random_rmsk.txt.gz 10-Jun-2005 15:57 3.2K
chromInfo.txt.gz 10-Jun-2005 15:57 220
extFile.txt.gz 10-Jun-2005 15:57 313
dmRefGene.txt.gz 10-Jun-2005 15:57 810K
gcPercent.txt.gz 10-Jun-2005 15:58 41K
genscan.txt.gz 10-Jun-2005 15:58 689K
genscanPep.txt.gz 10-Jun-2005 15:58 4.3M
history.txt.gz 10-Jun-2005 15:58 330
simpleRepeat.txt.gz 10-Jun-2005 15:58 603K
blastDm2FB.txt.gz 28-Jul-2005 05:23 900K
geneid.txt.gz 23-Sep-2005 04:49 731K
gbDelete_tmp.txt.gz 27-Sep-2005 05:01 180K
chr3L_gap.sql 01-Oct-2013 12:48 706
chr3L_gold.sql 01-Oct-2013 12:48 783
blastDm2FB.sql 01-Oct-2013 12:48 1.3K
chr2R_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr2R_rmsk.sql 01-Oct-2013 12:48 1.0K
chr2R_gap.sql 01-Oct-2013 12:48 706
chr3L_random_gap.sql 01-Oct-2013 12:48 720
chr2L_gap.sql 01-Oct-2013 12:48 706
chr2L_gold.sql 01-Oct-2013 12:48 783
chr2h_random_gap.sql 01-Oct-2013 12:48 720
chr2h_random_gold.sql 01-Oct-2013 12:48 797
chr2L_random_gap.sql 01-Oct-2013 12:48 720
chr2L_random_gold.sql 01-Oct-2013 12:48 797
chr2R_random_gap.sql 01-Oct-2013 12:48 720
chr2R_random_gold.sql 01-Oct-2013 12:48 797
chr2L_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr2L_rmsk.sql 01-Oct-2013 12:48 1.0K
chr2h_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr3L_random_gold.sql 01-Oct-2013 12:48 797
chr2R_gold.sql 01-Oct-2013 12:48 783
chr3h_random_gap.sql 01-Oct-2013 12:48 720
chr3h_random_gold.sql 01-Oct-2013 12:48 797
chr3L_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr3h_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr3L_rmsk.sql 01-Oct-2013 12:48 1.0K
chr4_random_gap.sql 01-Oct-2013 12:48 718
chr3R_gap.sql 01-Oct-2013 12:48 706
chr4_random_gold.sql 01-Oct-2013 12:48 795
chr3R_gold.sql 01-Oct-2013 12:48 783
chr4_gap.sql 01-Oct-2013 12:48 704
chr4_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chrM_gap.sql 01-Oct-2013 12:48 615
chr3R_random_gap.sql 01-Oct-2013 12:48 720
chr4_rmsk.sql 01-Oct-2013 12:48 1.0K
chr3R_random_gold.sql 01-Oct-2013 12:48 797
chr4_gold.sql 01-Oct-2013 12:48 781
chrM_rmsk.sql 01-Oct-2013 12:48 1.0K
chr3R_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr3R_rmsk.sql 01-Oct-2013 12:48 1.0K
chrYh_random_gap.sql 01-Oct-2013 12:48 720
chrYh_random_gold.sql 01-Oct-2013 12:48 797
chrU_gap.sql 01-Oct-2013 12:48 704
chrU_gold.sql 01-Oct-2013 12:48 781
chrYh_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chromInfo.sql 01-Oct-2013 12:48 396
chrU_rmsk.sql 01-Oct-2013 12:48 1.0K
chrX_gap.sql 01-Oct-2013 12:48 704
dmRefGene.sql 01-Oct-2013 12:48 663
chrX_gold.sql 01-Oct-2013 12:48 781
extFile.sql 01-Oct-2013 12:48 445
chrXh_random_gap.sql 01-Oct-2013 12:48 720
chrXh_random_gold.sql 01-Oct-2013 12:48 797
chrX_random_gap.sql 01-Oct-2013 12:48 718
chrX_random_gold.sql 01-Oct-2013 12:48 795
gbDelete_tmp.sql 01-Oct-2013 12:48 326
chrXh_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chrX_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chrX_rmsk.sql 01-Oct-2013 12:48 1.0K
gcPercent.sql 01-Oct-2013 12:48 546
geneid.sql 01-Oct-2013 12:48 1.0K
genscan.sql 01-Oct-2013 12:48 746
genscanPep.sql 01-Oct-2013 12:48 330
history.sql 01-Oct-2013 12:48 537
simpleRepeat.sql 01-Oct-2013 12:48 1.1K
grp.sql 02-Mar-2014 03:40 1.4K
grp.txt.gz 02-Mar-2014 03:40 223
chainDm6.sql 14-Dec-2014 12:57 1.7K
chainDm6.txt.gz 14-Dec-2014 12:57 11M
chainDm6Link.sql 14-Dec-2014 12:57 1.5K
chainDm6Link.txt.gz 14-Dec-2014 12:57 56M
netDm6.sql 14-Dec-2014 12:57 2.1K
netDm6.txt.gz 14-Dec-2014 12:57 2.8M
augustusGene.sql 26-Jul-2015 13:01 1.9K
augustusGene.txt.gz 26-Jul-2015 13:01 743K
microsat.sql 23-Aug-2015 15:16 1.5K
microsat.txt.gz 23-Aug-2015 15:16 1.0K
chr2L_mrna.sql 18-Dec-2016 07:02 2.1K
chr2L_mrna.txt.gz 18-Dec-2016 07:02 1.7K
chr2R_random_mrna.sql 18-Dec-2016 07:02 2.1K
chr2R_random_mrna.txt.gz 18-Dec-2016 07:02 191
chr3L_mrna.sql 18-Dec-2016 07:03 2.1K
chr3L_mrna.txt.gz 18-Dec-2016 07:03 1.5K
chr2R_random_est.sql 18-Dec-2016 07:03 2.1K
chr2R_random_est.txt.gz 18-Dec-2016 07:03 60K
chr2L_random_mrna.sql 18-Dec-2016 07:03 2.1K
chr2L_random_mrna.txt.gz 18-Dec-2016 07:03 42
chr2L_intronEst.sql 18-Dec-2016 07:03 2.1K
chr2L_intronEst.txt.gz 18-Dec-2016 07:03 360K
all_est.sql 18-Dec-2016 07:03 2.1K
all_est.txt.gz 18-Dec-2016 07:03 3.6M
chr2L_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr2L_random_intronEst.txt.gz 18-Dec-2016 07:03 6.7K
chr2h_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr2h_random_intronEst.txt.gz 18-Dec-2016 07:03 15K
chr3R_est.sql 18-Dec-2016 07:03 2.1K
chr3R_est.txt.gz 18-Dec-2016 07:03 823K
chr2h_random_mrna.sql 18-Dec-2016 07:03 2.1K
chr2h_random_mrna.txt.gz 18-Dec-2016 07:03 244
chr2R_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr2R_random_intronEst.txt.gz 18-Dec-2016 07:03 25K
chr2R_intronEst.sql 18-Dec-2016 07:03 2.1K
chr2R_intronEst.txt.gz 18-Dec-2016 07:03 396K
chrX_est.sql 18-Dec-2016 07:03 2.1K
chrX_est.txt.gz 18-Dec-2016 07:03 326K
chr4_random_est.sql 18-Dec-2016 07:03 2.1K
chr4_random_est.txt.gz 18-Dec-2016 07:03 1.8K
chr2L_random_est.sql 18-Dec-2016 07:03 2.1K
chr2L_random_est.txt.gz 18-Dec-2016 07:03 14K
chrM_intronEst.sql 18-Dec-2016 07:03 2.1K
chrM_intronEst.txt.gz 18-Dec-2016 07:03 39
chr3R_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr3R_random_intronEst.txt.gz 18-Dec-2016 07:03 13K
chr3L_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr3L_random_intronEst.txt.gz 18-Dec-2016 07:03 7.3K
chr3L_est.sql 18-Dec-2016 07:03 2.1K
chr3L_est.txt.gz 18-Dec-2016 07:03 625K
chr3h_random_mrna.sql 18-Dec-2016 07:03 2.1K
chr3h_random_mrna.txt.gz 18-Dec-2016 07:03 42
chr3R_mrna.sql 18-Dec-2016 07:03 2.1K
chr3R_mrna.txt.gz 18-Dec-2016 07:03 1.9K
chr4_intronEst.sql 18-Dec-2016 07:03 2.1K
chr4_intronEst.txt.gz 18-Dec-2016 07:03 15K
chr2R_est.sql 18-Dec-2016 07:03 2.1K
chr2R_est.txt.gz 18-Dec-2016 07:03 752K
chr3L_random_mrna.sql 18-Dec-2016 07:03 2.1K
chr3L_random_mrna.txt.gz 18-Dec-2016 07:03 175
chr3R_intronEst.sql 18-Dec-2016 07:03 2.1K
chr3R_intronEst.txt.gz 18-Dec-2016 07:03 446K
chr4_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr4_random_intronEst.txt.gz 18-Dec-2016 07:03 1.0K
chr2h_random_est.sql 18-Dec-2016 07:03 2.1K
chr2h_random_est.txt.gz 18-Dec-2016 07:03 24K
chr3h_random_est.sql 18-Dec-2016 07:03 2.1K
chr3h_random_est.txt.gz 18-Dec-2016 07:03 12K
chr2L_est.sql 18-Dec-2016 07:03 2.1K
chr2L_est.txt.gz 18-Dec-2016 07:03 679K
chrU_intronEst.sql 18-Dec-2016 07:03 2.1K
chrU_intronEst.txt.gz 18-Dec-2016 07:03 23K
chrYh_random_est.sql 18-Dec-2016 07:03 2.1K
chrYh_random_est.txt.gz 18-Dec-2016 07:03 161
chrX_intronEst.sql 18-Dec-2016 07:03 2.1K
chrX_intronEst.txt.gz 18-Dec-2016 07:03 148K
chr4_random_mrna.sql 18-Dec-2016 07:03 2.1K
chr4_random_mrna.txt.gz 18-Dec-2016 07:03 41
chrU_mrna.sql 18-Dec-2016 07:03 2.1K
chrU_mrna.txt.gz 18-Dec-2016 07:03 786
chrM_mrna.sql 18-Dec-2016 07:03 2.1K
chrM_mrna.txt.gz 18-Dec-2016 07:03 34
chr3L_random_est.sql 18-Dec-2016 07:03 2.1K
chr3L_random_est.txt.gz 18-Dec-2016 07:03 17K
chr3R_random_est.sql 18-Dec-2016 07:03 2.1K
chr3R_random_est.txt.gz 18-Dec-2016 07:03 33K
chrYh_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chrYh_random_intronEst.txt.gz 18-Dec-2016 07:03 47
chr4_est.sql 18-Dec-2016 07:03 2.1K
chr4_est.txt.gz 18-Dec-2016 07:03 26K
chrX_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chrX_random_intronEst.txt.gz 18-Dec-2016 07:03 46K
chrU_est.sql 18-Dec-2016 07:03 2.1K
chrU_est.txt.gz 18-Dec-2016 07:03 111K
chr3R_random_mrna.sql 18-Dec-2016 07:03 2.1K
chr3R_random_mrna.txt.gz 18-Dec-2016 07:03 42
chr4_mrna.sql 18-Dec-2016 07:03 2.1K
chr4_mrna.txt.gz 18-Dec-2016 07:03 34
chrM_est.sql 18-Dec-2016 07:03 2.1K
chrM_est.txt.gz 18-Dec-2016 07:03 28K
chrX_mrna.sql 18-Dec-2016 07:03 2.1K
chrX_mrna.txt.gz 18-Dec-2016 07:03 1.2K
chrX_random_est.sql 18-Dec-2016 07:03 2.1K
chrX_random_est.txt.gz 18-Dec-2016 07:03 108K
chr3h_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr3h_random_intronEst.txt.gz 18-Dec-2016 07:03 9.0K
chrXh_random_est.sql 18-Dec-2016 07:03 2.1K
chrXh_random_est.txt.gz 18-Dec-2016 07:03 1.3K
chrYh_random_mrna.sql 18-Dec-2016 07:03 2.1K
chrYh_random_mrna.txt.gz 18-Dec-2016 07:03 42
estOrientInfo.sql 18-Dec-2016 07:03 1.8K
estOrientInfo.txt.gz 18-Dec-2016 07:03 1.1M
chrX_random_mrna.sql 18-Dec-2016 07:03 2.1K
chrX_random_mrna.txt.gz 18-Dec-2016 07:03 627
chr3L_intronEst.sql 18-Dec-2016 07:03 2.1K
chr3L_intronEst.txt.gz 18-Dec-2016 07:03 317K
chrXh_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chrXh_random_intronEst.txt.gz 18-Dec-2016 07:03 492
chrXh_random_mrna.sql 18-Dec-2016 07:03 2.1K
chrXh_random_mrna.txt.gz 18-Dec-2016 07:03 42
hgFindSpec.sql 26-Mar-2017 21:24 1.7K
hgFindSpec.txt.gz 26-Mar-2017 21:24 585
trackDb.sql 26-Mar-2017 21:30 2.0K
trackDb.txt.gz 26-Mar-2017 21:30 17K
all_mrna.sql 13-Jun-2017 16:36 2.1K
all_mrna.txt.gz 13-Jun-2017 16:36 9.6K
chr2R_mrna.sql 13-Jun-2017 16:36 2.1K
chr2R_mrna.txt.gz 13-Jun-2017 16:36 1.8K
mrnaOrientInfo.sql 13-Jun-2017 16:37 1.8K
mrnaOrientInfo.txt.gz 13-Jun-2017 16:37 3.1K
xenoRefFlat.sql 09-Jul-2017 08:52 1.7K
xenoRefFlat.txt.gz 09-Jul-2017 08:52 9.8M
xenoRefGene.sql 09-Jul-2017 08:52 1.9K
xenoRefGene.txt.gz 09-Jul-2017 08:52 11M
xenoRefSeqAli.sql 09-Jul-2017 08:52 2.1K
xenoRefSeqAli.txt.gz 09-Jul-2017 08:52 12M
gbLoaded.sql 09-Jul-2017 08:52 1.6K
gbLoaded.txt.gz 09-Jul-2017 08:52 8.9K
xenoMrna.sql 09-Jul-2017 08:52 2.1K
xenoMrna.txt.gz 09-Jul-2017 08:53 123M
tableDescriptions.sql 23-Jul-2017 04:09 1.4K
tableDescriptions.txt.gz 23-Jul-2017 04:09 3.9K
bigFiles.sql 23-Jul-2017 04:09 1.4K
bigFiles.txt.gz 23-Jul-2017 04:09 33
tableList.sql 23-Jul-2017 04:09 1.5K
tableList.txt.gz 23-Jul-2017 04:09 7.9K