This directory contains a dump of the annotation database for
the Release 1.0 assembly of the Drosophila simulans genome
(droSim1, Apr. 2005) produced by the Genome Sequencing Center
at the Washington University St. Louis School of Medicine. The
annotations were generated by UCSC and collaborators worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=droSim1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/droSim1/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely available for public use.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 23-Jul-2017 04:09 33
chrM_gap.txt.gz 10-Jun-2005 15:56 33
chr4_mrna.txt.gz 18-Dec-2016 07:03 34
chrM_mrna.txt.gz 18-Dec-2016 07:03 34
chrM_intronEst.txt.gz 18-Dec-2016 07:03 39
chr4_random_mrna.txt.gz 18-Dec-2016 07:03 41
chr2L_random_mrna.txt.gz 18-Dec-2016 07:03 42
chr3R_random_mrna.txt.gz 18-Dec-2016 07:03 42
chr3h_random_mrna.txt.gz 18-Dec-2016 07:03 42
chrXh_random_mrna.txt.gz 18-Dec-2016 07:03 42
chrYh_random_mrna.txt.gz 18-Dec-2016 07:03 42
chrYh_random_intronEst.txt.gz 18-Dec-2016 07:03 47
chrYh_random_est.txt.gz 18-Dec-2016 07:03 161
chr3L_random_mrna.txt.gz 18-Dec-2016 07:03 175
chr2R_random_mrna.txt.gz 18-Dec-2016 07:02 191
chromInfo.txt.gz 10-Jun-2005 15:57 220
grp.txt.gz 02-Mar-2014 03:40 223
chr2h_random_mrna.txt.gz 18-Dec-2016 07:03 244
chrXh_random_gap.txt.gz 10-Jun-2005 15:57 300
extFile.txt.gz 10-Jun-2005 15:57 313
gbDelete_tmp.sql 01-Oct-2013 12:48 326
genscanPep.sql 01-Oct-2013 12:48 330
history.txt.gz 10-Jun-2005 15:58 330
chrXh_random_gold.txt.gz 10-Jun-2005 15:57 372
chrYh_random_gap.txt.gz 10-Jun-2005 15:57 379
chromInfo.sql 01-Oct-2013 12:48 396
extFile.sql 01-Oct-2013 12:48 445
chr4_random_gap.txt.gz 10-Jun-2005 15:56 456
chrYh_random_gold.txt.gz 10-Jun-2005 15:57 491
chrXh_random_intronEst.txt.gz 18-Dec-2016 07:03 492
history.sql 01-Oct-2013 12:48 537
gcPercent.sql 01-Oct-2013 12:48 546
hgFindSpec.txt.gz 26-Mar-2017 21:24 585
chrM_gap.sql 01-Oct-2013 12:48 615
chrX_random_mrna.txt.gz 18-Dec-2016 07:03 627
dmRefGene.sql 01-Oct-2013 12:48 663
chr4_gap.sql 01-Oct-2013 12:48 704
chrU_gap.sql 01-Oct-2013 12:48 704
chrX_gap.sql 01-Oct-2013 12:48 704
chr2L_gap.sql 01-Oct-2013 12:48 706
chr2R_gap.sql 01-Oct-2013 12:48 706
chr3L_gap.sql 01-Oct-2013 12:48 706
chr3R_gap.sql 01-Oct-2013 12:48 706
chr4_random_gap.sql 01-Oct-2013 12:48 718
chrX_random_gap.sql 01-Oct-2013 12:48 718
chr2L_random_gap.sql 01-Oct-2013 12:48 720
chr2R_random_gap.sql 01-Oct-2013 12:48 720
chr2h_random_gap.sql 01-Oct-2013 12:48 720
chr3L_random_gap.sql 01-Oct-2013 12:48 720
chr3R_random_gap.sql 01-Oct-2013 12:48 720
chr3h_random_gap.sql 01-Oct-2013 12:48 720
chrXh_random_gap.sql 01-Oct-2013 12:48 720
chrYh_random_gap.sql 01-Oct-2013 12:48 720
genscan.sql 01-Oct-2013 12:48 746
chr4_gold.sql 01-Oct-2013 12:48 781
chrU_gold.sql 01-Oct-2013 12:48 781
chrX_gold.sql 01-Oct-2013 12:48 781
chr2L_gold.sql 01-Oct-2013 12:48 783
chr2R_gold.sql 01-Oct-2013 12:48 783
chr3L_gold.sql 01-Oct-2013 12:48 783
chr3R_gold.sql 01-Oct-2013 12:48 783
chrU_mrna.txt.gz 18-Dec-2016 07:03 786
chr4_random_gold.sql 01-Oct-2013 12:48 795
chrX_random_gold.sql 01-Oct-2013 12:48 795
chr2L_random_gold.sql 01-Oct-2013 12:48 797
chr2R_random_gold.sql 01-Oct-2013 12:48 797
chr2h_random_gold.sql 01-Oct-2013 12:48 797
chr3L_random_gold.sql 01-Oct-2013 12:48 797
chr3R_random_gold.sql 01-Oct-2013 12:48 797
chr3h_random_gold.sql 01-Oct-2013 12:48 797
chrXh_random_gold.sql 01-Oct-2013 12:48 797
chrYh_random_gold.sql 01-Oct-2013 12:48 797
chr4_random_gold.txt.gz 10-Jun-2005 15:56 952
chrM_rmsk.txt.gz 10-Jun-2005 15:56 1.0K
chr4_random_intronEst.txt.gz 18-Dec-2016 07:03 1.0K
geneid.sql 01-Oct-2013 12:48 1.0K
chr4_rmsk.sql 01-Oct-2013 12:48 1.0K
chrM_rmsk.sql 01-Oct-2013 12:48 1.0K
chrU_rmsk.sql 01-Oct-2013 12:48 1.0K
chrX_rmsk.sql 01-Oct-2013 12:48 1.0K
chr2L_rmsk.sql 01-Oct-2013 12:48 1.0K
chr2R_rmsk.sql 01-Oct-2013 12:48 1.0K
chr3L_rmsk.sql 01-Oct-2013 12:48 1.0K
chr3R_rmsk.sql 01-Oct-2013 12:48 1.0K
microsat.txt.gz 23-Aug-2015 15:16 1.0K
chr4_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chrX_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr2L_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr2R_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr2h_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr3L_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr3R_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chr3h_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chrXh_random_rmsk.sql 01-Oct-2013 12:48 1.1K
chrYh_random_rmsk.sql 01-Oct-2013 12:48 1.1K
simpleRepeat.sql 01-Oct-2013 12:48 1.1K
chrX_mrna.txt.gz 18-Dec-2016 07:03 1.2K
blastDm2FB.sql 01-Oct-2013 12:48 1.3K
chrXh_random_est.txt.gz 18-Dec-2016 07:03 1.3K
bigFiles.sql 23-Jul-2017 04:09 1.4K
grp.sql 02-Mar-2014 03:40 1.4K
tableDescriptions.sql 23-Jul-2017 04:09 1.4K
chr3L_mrna.txt.gz 18-Dec-2016 07:03 1.5K
microsat.sql 23-Aug-2015 15:16 1.5K
chainDm6Link.sql 14-Dec-2014 12:57 1.5K
tableList.sql 23-Jul-2017 04:09 1.5K
gbLoaded.sql 09-Jul-2017 08:52 1.6K
chr2L_mrna.txt.gz 18-Dec-2016 07:02 1.7K
chainDm6.sql 14-Dec-2014 12:57 1.7K
xenoRefFlat.sql 09-Jul-2017 08:52 1.7K
hgFindSpec.sql 26-Mar-2017 21:24 1.7K
estOrientInfo.sql 18-Dec-2016 07:03 1.8K
mrnaOrientInfo.sql 13-Jun-2017 16:37 1.8K
chr4_random_est.txt.gz 18-Dec-2016 07:03 1.8K
chr2R_mrna.txt.gz 13-Jun-2017 16:36 1.8K
chr3R_mrna.txt.gz 18-Dec-2016 07:03 1.9K
chr4_gap.txt.gz 10-Jun-2005 15:56 1.9K
xenoRefGene.sql 09-Jul-2017 08:52 1.9K
augustusGene.sql 26-Jul-2015 13:01 1.9K
trackDb.sql 26-Mar-2017 21:30 2.0K
netDm6.sql 14-Dec-2014 12:57 2.1K
chr4_est.sql 18-Dec-2016 07:03 2.1K
chrM_est.sql 18-Dec-2016 07:03 2.1K
chrU_est.sql 18-Dec-2016 07:03 2.1K
chrX_est.sql 18-Dec-2016 07:03 2.1K
chr2L_est.sql 18-Dec-2016 07:03 2.1K
chr2R_est.sql 18-Dec-2016 07:03 2.1K
chr3L_est.sql 18-Dec-2016 07:03 2.1K
chr3R_est.sql 18-Dec-2016 07:03 2.1K
chr4_mrna.sql 18-Dec-2016 07:03 2.1K
chrM_mrna.sql 18-Dec-2016 07:03 2.1K
chrU_mrna.sql 18-Dec-2016 07:03 2.1K
chrX_mrna.sql 18-Dec-2016 07:03 2.1K
chr2L_mrna.sql 18-Dec-2016 07:02 2.1K
chr2R_mrna.sql 13-Jun-2017 16:36 2.1K
chr3L_mrna.sql 18-Dec-2016 07:03 2.1K
chr3R_mrna.sql 18-Dec-2016 07:03 2.1K
all_est.sql 18-Dec-2016 07:03 2.1K
all_mrna.sql 13-Jun-2017 16:36 2.1K
xenoMrna.sql 09-Jul-2017 08:52 2.1K
chr4_intronEst.sql 18-Dec-2016 07:03 2.1K
chrM_intronEst.sql 18-Dec-2016 07:03 2.1K
chrU_intronEst.sql 18-Dec-2016 07:03 2.1K
chrX_intronEst.sql 18-Dec-2016 07:03 2.1K
chr2L_intronEst.sql 18-Dec-2016 07:03 2.1K
chr2R_intronEst.sql 18-Dec-2016 07:03 2.1K
chr3L_intronEst.sql 18-Dec-2016 07:03 2.1K
chr3R_intronEst.sql 18-Dec-2016 07:03 2.1K
chr4_random_est.sql 18-Dec-2016 07:03 2.1K
chrX_random_est.sql 18-Dec-2016 07:03 2.1K
chrXh_random_rmsk.txt.gz 10-Jun-2005 15:57 2.1K
chr2L_random_est.sql 18-Dec-2016 07:03 2.1K
chr2R_random_est.sql 18-Dec-2016 07:03 2.1K
chr2h_random_est.sql 18-Dec-2016 07:03 2.1K
chr3L_random_est.sql 18-Dec-2016 07:03 2.1K
chr3R_random_est.sql 18-Dec-2016 07:03 2.1K
chr3h_random_est.sql 18-Dec-2016 07:03 2.1K
chr4_random_mrna.sql 18-Dec-2016 07:03 2.1K
chrX_random_mrna.sql 18-Dec-2016 07:03 2.1K
chrXh_random_est.sql 18-Dec-2016 07:03 2.1K
chrYh_random_est.sql 18-Dec-2016 07:03 2.1K
chr2L_random_mrna.sql 18-Dec-2016 07:03 2.1K
chr2R_random_mrna.sql 18-Dec-2016 07:02 2.1K
chr2h_random_mrna.sql 18-Dec-2016 07:03 2.1K
chr3L_random_mrna.sql 18-Dec-2016 07:03 2.1K
chr3R_random_mrna.sql 18-Dec-2016 07:03 2.1K
chr3h_random_mrna.sql 18-Dec-2016 07:03 2.1K
chrXh_random_mrna.sql 18-Dec-2016 07:03 2.1K
chrYh_random_mrna.sql 18-Dec-2016 07:03 2.1K
xenoRefSeqAli.sql 09-Jul-2017 08:52 2.1K
chr4_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chrX_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr2L_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr2R_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr2h_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr3L_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr3R_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr3h_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chrXh_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chrYh_random_intronEst.sql 18-Dec-2016 07:03 2.1K
chr2L_random_gap.txt.gz 10-Jun-2005 15:56 3.0K
chr4_random_rmsk.txt.gz 10-Jun-2005 15:56 3.0K
mrnaOrientInfo.txt.gz 13-Jun-2017 16:37 3.1K
chrYh_random_rmsk.txt.gz 10-Jun-2005 15:57 3.2K
chr3h_random_gap.txt.gz 10-Jun-2005 15:56 3.5K
chr3L_random_gap.txt.gz 10-Jun-2005 15:56 3.7K
tableDescriptions.txt.gz 23-Jul-2017 04:09 3.9K
chr3R_random_gap.txt.gz 10-Jun-2005 15:56 4.7K
chr2L_random_gold.txt.gz 10-Jun-2005 15:56 4.8K
chr3h_random_gold.txt.gz 10-Jun-2005 15:56 5.1K
chr4_gold.txt.gz 10-Jun-2005 15:56 5.4K
chr3L_random_gold.txt.gz 10-Jun-2005 15:56 6.4K
chr2L_random_intronEst.txt.gz 18-Dec-2016 07:03 6.7K
chr2h_random_gap.txt.gz 10-Jun-2005 15:56 7.1K
chr3L_random_intronEst.txt.gz 18-Dec-2016 07:03 7.3K
chr3R_random_gold.txt.gz 10-Jun-2005 15:56 7.8K
tableList.txt.gz 23-Jul-2017 04:09 7.9K
chr2L_random_rmsk.txt.gz 10-Jun-2005 15:56 8.6K
gbLoaded.txt.gz 09-Jul-2017 08:52 8.9K
chr3h_random_intronEst.txt.gz 18-Dec-2016 07:03 9.0K
all_mrna.txt.gz 13-Jun-2017 16:36 9.6K
chr3L_random_rmsk.txt.gz 10-Jun-2005 15:56 10K
chr2R_random_gap.txt.gz 10-Jun-2005 15:56 10K
chr2h_random_gold.txt.gz 10-Jun-2005 15:56 11K
chr3h_random_est.txt.gz 18-Dec-2016 07:03 12K
chr3R_random_intronEst.txt.gz 18-Dec-2016 07:03 13K
chr3R_random_rmsk.txt.gz 10-Jun-2005 15:56 13K
chr2L_random_est.txt.gz 18-Dec-2016 07:03 14K
chr2h_random_intronEst.txt.gz 18-Dec-2016 07:03 15K
chr4_intronEst.txt.gz 18-Dec-2016 07:03 15K
chr2R_random_gold.txt.gz 10-Jun-2005 15:56 17K
trackDb.txt.gz 26-Mar-2017 21:30 17K
chr3L_random_est.txt.gz 18-Dec-2016 07:03 17K
chrX_random_gap.txt.gz 10-Jun-2005 15:57 20K
chr2R_gap.txt.gz 10-Jun-2005 15:56 21K
chr2L_gap.txt.gz 10-Jun-2005 15:56 22K
chrU_intronEst.txt.gz 18-Dec-2016 07:03 23K
chr3L_gap.txt.gz 10-Jun-2005 15:56 23K
chr2h_random_est.txt.gz 18-Dec-2016 07:03 24K
chr2R_random_intronEst.txt.gz 18-Dec-2016 07:03 25K
chr4_rmsk.txt.gz 10-Jun-2005 15:56 25K
chr3R_gap.txt.gz 10-Jun-2005 15:56 25K
chr4_est.txt.gz 18-Dec-2016 07:03 26K
chrM_est.txt.gz 18-Dec-2016 07:03 28K
chrX_gap.txt.gz 10-Jun-2005 15:57 30K
chr3R_random_est.txt.gz 18-Dec-2016 07:03 33K
chrX_random_gold.txt.gz 10-Jun-2005 15:57 35K
chr2R_random_rmsk.txt.gz 10-Jun-2005 15:56 37K
gcPercent.txt.gz 10-Jun-2005 15:58 41K
chrX_random_intronEst.txt.gz 18-Dec-2016 07:03 46K
chr3h_random_rmsk.txt.gz 10-Jun-2005 15:56 51K
chr2R_random_est.txt.gz 18-Dec-2016 07:03 60K
chrX_random_rmsk.txt.gz 10-Jun-2005 15:57 75K
chr2R_gold.txt.gz 10-Jun-2005 15:56 80K
chr2L_gold.txt.gz 10-Jun-2005 15:56 81K
chr3L_gold.txt.gz 10-Jun-2005 15:56 88K
chrU_gap.txt.gz 10-Jun-2005 15:57 94K
chrX_gold.txt.gz 10-Jun-2005 15:57 99K
chr3R_gold.txt.gz 10-Jun-2005 15:56 104K
chrX_random_est.txt.gz 18-Dec-2016 07:03 108K
chr2h_random_rmsk.txt.gz 10-Jun-2005 15:56 109K
chrU_est.txt.gz 18-Dec-2016 07:03 111K
chrU_gold.txt.gz 10-Jun-2005 15:57 136K
chrX_intronEst.txt.gz 18-Dec-2016 07:03 148K
gbDelete_tmp.txt.gz 27-Sep-2005 05:01 180K
chr2R_rmsk.txt.gz 10-Jun-2005 15:56 198K
chr2L_rmsk.txt.gz 10-Jun-2005 15:56 224K
chrX_rmsk.txt.gz 10-Jun-2005 15:57 248K
chr3L_rmsk.txt.gz 10-Jun-2005 15:56 250K
chr3R_rmsk.txt.gz 10-Jun-2005 15:56 264K
chr3L_intronEst.txt.gz 18-Dec-2016 07:03 317K
chrX_est.txt.gz 18-Dec-2016 07:03 326K
chr2L_intronEst.txt.gz 18-Dec-2016 07:03 360K
chr2R_intronEst.txt.gz 18-Dec-2016 07:03 396K
chr3R_intronEst.txt.gz 18-Dec-2016 07:03 446K
chrU_rmsk.txt.gz 10-Jun-2005 15:57 533K
simpleRepeat.txt.gz 10-Jun-2005 15:58 603K
chr3L_est.txt.gz 18-Dec-2016 07:03 625K
chr2L_est.txt.gz 18-Dec-2016 07:03 679K
genscan.txt.gz 10-Jun-2005 15:58 689K
geneid.txt.gz 23-Sep-2005 04:49 731K
augustusGene.txt.gz 26-Jul-2015 13:01 743K
chr2R_est.txt.gz 18-Dec-2016 07:03 752K
dmRefGene.txt.gz 10-Jun-2005 15:57 810K
chr3R_est.txt.gz 18-Dec-2016 07:03 823K
blastDm2FB.txt.gz 28-Jul-2005 05:23 900K
estOrientInfo.txt.gz 18-Dec-2016 07:03 1.1M
netDm6.txt.gz 14-Dec-2014 12:57 2.8M
all_est.txt.gz 18-Dec-2016 07:03 3.6M
genscanPep.txt.gz 10-Jun-2005 15:58 4.3M
xenoRefFlat.txt.gz 09-Jul-2017 08:52 9.8M
chainDm6.txt.gz 14-Dec-2014 12:57 11M
xenoRefGene.txt.gz 09-Jul-2017 08:52 11M
xenoRefSeqAli.txt.gz 09-Jul-2017 08:52 12M
chainDm6Link.txt.gz 14-Dec-2014 12:57 56M
xenoMrna.txt.gz 09-Jul-2017 08:53 123M