This directory contains the Drosophila virilis 12 July 2004 assembly from Agencourt Bioscience Corporation. The annotations were generated by UCSC and collaborators worldwide. Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=droVir1 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. ---------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend that you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/droVir1/database. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) All the annotations in this directory are freely usable for any purpose. The D. virilis data have been freely provided by Agencourt Bioscience Corporation before publication for use in the UCSC Genome Browser with the following understanding: 1. The data may be freely downloaded, used in analyses, and repackaged in databases. 2. Users are free to use the data in scientific papers analyzing particular genes and regions, provided that the Agencourt is properly acknowledged. 3. Agencourt reserves the right to publish the initial large-scale analyses of the dataset, including large-scale identification of regions of evolutionary conservation and large-scale genomic assembly. 4. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory - chromInfo.txt.gz 2004-12-13 17:17 75K gap.txt.gz 2004-12-13 17:17 86K gcPercent.txt.gz 2004-12-13 17:18 45K genscanPep.txt.gz 2004-12-13 17:18 5.1M history.txt.gz 2004-12-13 17:18 231 rmsk.txt.gz 2004-12-13 17:18 5.2M simpleRepeat.txt.gz 2004-12-13 17:18 2.3M genscan.txt.gz 2005-01-09 04:35 871K blastDm2FB.txt.gz 2005-07-28 05:23 1.4M geneid.txt.gz 2005-09-23 04:49 1.3M gbDelete_tmp.txt.gz 2005-09-27 05:01 159K chainDm2.txt.gz 2006-01-19 06:00 10M chainDm2Link.txt.gz 2006-01-19 06:02 76M netDm2.txt.gz 2006-01-19 06:03 8.3M blastDm2FB.sql 2013-10-01 12:48 1.3K chainDm2.sql 2013-10-01 12:48 878 chainDm2Link.sql 2013-10-01 12:48 577 chromInfo.sql 2013-10-01 12:48 396 gap.sql 2013-10-01 12:48 722 gbDelete_tmp.sql 2013-10-01 12:48 326 gcPercent.sql 2013-10-01 12:48 546 geneid.sql 2013-10-01 12:48 1.0K genscan.sql 2013-10-01 12:48 748 genscanPep.sql 2013-10-01 12:48 330 history.sql 2013-10-01 12:48 537 netDm2.sql 2013-10-01 12:48 1.3K rmsk.sql 2013-10-01 12:48 1.1K simpleRepeat.sql 2013-10-01 12:48 1.1K grp.sql 2014-03-02 03:40 1.4K grp.txt.gz 2014-03-02 03:40 223 augustusGene.sql 2015-07-26 13:01 1.9K augustusGene.txt.gz 2015-07-26 13:01 737K microsat.sql 2015-08-23 15:22 1.5K microsat.txt.gz 2015-08-23 15:22 34K xenoMrna.sql 2016-02-21 14:46 2.4K xenoMrna.txt.gz 2016-02-21 14:46 134M all_mrna.sql 2020-08-21 14:18 2.1K all_mrna.txt.gz 2020-08-21 14:18 7.4K mrnaOrientInfo.sql 2020-08-21 14:18 1.8K mrnaOrientInfo.txt.gz 2020-08-21 14:18 1.8K xenoRefGene.sql 2020-08-21 14:38 2.0K xenoRefGene.txt.gz 2020-08-21 14:38 14M xenoRefFlat.sql 2020-08-21 14:38 1.7K xenoRefFlat.txt.gz 2020-08-21 14:38 13M xenoRefSeqAli.sql 2020-08-21 14:38 2.1K xenoRefSeqAli.txt.gz 2020-08-21 14:38 14M gbLoaded.sql 2020-08-21 14:38 1.6K gbLoaded.txt.gz 2020-08-21 14:38 15K trackDb.sql 2023-03-28 13:48 2.1K trackDb.txt.gz 2023-03-28 13:48 11K hgFindSpec.sql 2023-03-28 13:48 1.8K hgFindSpec.txt.gz 2023-03-28 13:48 660 tableDescriptions.sql 2024-11-30 02:03 1.5K tableDescriptions.txt.gz 2024-11-30 02:03 4.4K tableList.sql 2024-12-01 03:27 1.6K tableList.txt.gz 2024-12-01 03:27 1.9K bigFiles.sql 2024-12-01 03:27 1.4K bigFiles.txt.gz 2024-12-01 03:27 33