This directory contains a dump of the UCSC genome annotation database for
the March 2006 assembly of the cat genome (felCat3, Broad Release 3).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Broad Institute at MIT and Harvard.
For more information on the cat genome, see the project website:
http://www.broad.mit.edu/mammals/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/felCat3/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
all_est.sql 15-May-2016 08:36 2.1K
all_est.txt.gz 15-May-2016 08:36 40K
all_mrna.sql 05-Jun-2017 10:13 2.1K
all_mrna.txt.gz 05-Jun-2017 10:13 209K
bigFiles.sql 16-Jul-2017 05:51 1.4K
bigFiles.txt.gz 16-Jul-2017 05:51 33
blastHg18KG.sql 20-Dec-2009 11:32 2.3K
blastHg18KG.txt.gz 20-Dec-2009 11:32 1.9M
chainCanFam2.sql 19-Jan-2007 16:34 1.7K
chainCanFam2.txt.gz 19-Jan-2007 16:35 80M
chainCanFam2Link.sql 19-Jan-2007 16:35 1.4K
chainCanFam2Link.txt.gz 19-Jan-2007 16:41 522M
chainHg19.sql 20-Sep-2009 09:24 1.8K
chainHg19.txt.gz 20-Sep-2009 09:24 35M
chainHg19Link.sql 20-Sep-2009 09:21 1.5K
chainHg19Link.txt.gz 20-Sep-2009 09:22 341M
chainMm8.sql 19-Jan-2007 16:54 1.6K
chainMm8.txt.gz 19-Jan-2007 16:54 28M
chainMm8Link.sql 19-Jan-2007 16:55 1.4K
chainMm8Link.txt.gz 19-Jan-2007 16:57 237M
chromInfo.sql 19-Jan-2007 17:00 1.2K
chromInfo.txt.gz 19-Jan-2007 17:00 1.1M
contigAcc.sql 19-Jan-2007 17:00 1.2K
contigAcc.txt.gz 19-Jan-2007 17:00 4.0M
cpgIslandExt.sql 19-Jan-2007 17:00 1.6K
cpgIslandExt.txt.gz 19-Jan-2007 17:00 1.1M
cpgIslandExtUnmasked.sql 01-Jun-2014 12:51 1.7K
cpgIslandExtUnmasked.txt.gz 01-Jun-2014 12:51 1.5M
ensGene.sql 21-Oct-2012 03:37 1.9K
ensGene.txt.gz 21-Oct-2012 03:37 1.7M
ensGtp.sql 21-Oct-2012 03:37 1.4K
ensGtp.txt.gz 21-Oct-2012 03:37 180K
ensPep.sql 21-Oct-2012 03:37 1.3K
ensPep.txt.gz 21-Oct-2012 03:37 4.0M
ensemblGeneScaffold.sql 21-Oct-2012 03:37 1.7K
ensemblGeneScaffold.txt.gz 21-Oct-2012 03:37 818K
ensemblSource.sql 21-Oct-2012 03:37 1.4K
ensemblSource.txt.gz 21-Oct-2012 03:37 68K
ensemblToGeneName.sql 21-Oct-2012 03:37 1.4K
ensemblToGeneName.txt.gz 21-Oct-2012 03:37 104K
estOrientInfo.sql 15-May-2016 08:36 1.8K
estOrientInfo.txt.gz 15-May-2016 08:36 13K
extFile.sql 21-Jun-2007 10:45 1.3K
extFile.txt.gz 21-Jun-2007 10:45 83
gap.sql 19-Jan-2007 17:00 1.5K
gap.txt.gz 19-Jan-2007 17:00 6.7M
gbLoaded.sql 09-Jul-2017 09:04 1.6K
gbLoaded.txt.gz 09-Jul-2017 09:04 16K
gc5Base.sql 19-Jan-2007 17:01 1.7K
gc5Base.txt.gz 19-Jan-2007 17:02 14M
geneid.sql 15-Feb-2007 09:38 1.9K
geneid.txt.gz 15-Feb-2007 09:38 5.4M
geneidPep.sql 15-Feb-2007 09:38 1.1K
geneidPep.txt.gz 15-Feb-2007 09:38 7.7M
genscan.sql 19-Jan-2007 17:02 1.6K
genscan.txt.gz 19-Jan-2007 17:02 2.7M
genscanPep.sql 19-Jan-2007 17:02 1.2K
genscanPep.txt.gz 19-Jan-2007 17:02 8.6M
genscanSubopt.sql 19-Jan-2007 17:02 1.5K
genscanSubopt.txt.gz 19-Jan-2007 17:02 5.8M
gold.sql 19-Jan-2007 17:02 1.6K
gold.txt.gz 19-Jan-2007 17:02 11M
grp.sql 02-Mar-2014 03:40 1.4K
grp.txt.gz 02-Mar-2014 03:40 208
hgFindSpec.sql 16-Jul-2017 05:51 1.7K
hgFindSpec.txt.gz 16-Jul-2017 05:51 1.0K
history.sql 04-Jul-2010 15:39 1.6K
history.txt.gz 04-Jul-2010 15:39 530
intronEst.sql 15-May-2016 08:36 2.1K
intronEst.txt.gz 15-May-2016 08:36 15K
microsat.sql 19-Jan-2007 17:02 1.3K
microsat.txt.gz 19-Jan-2007 17:02 658K
mrnaOrientInfo.sql 05-Jun-2017 10:11 1.8K
mrnaOrientInfo.txt.gz 05-Jun-2017 10:11 59K
multiz4way.sql 21-Jun-2007 10:45 1.4K
multiz4way.txt.gz 21-Jun-2007 10:46 61M
multiz4wayFrames.sql 21-Jun-2007 10:46 1.6K
multiz4wayFrames.txt.gz 21-Jun-2007 10:47 5.8M
multiz4waySummary.sql 21-Jun-2007 10:47 1.5K
multiz4waySummary.txt.gz 21-Jun-2007 10:47 23K
netCanFam2.sql 19-Jan-2007 17:02 2.2K
netCanFam2.txt.gz 19-Jan-2007 17:03 55M
netHg19.sql 20-Sep-2009 09:24 2.3K
netHg19.txt.gz 20-Sep-2009 09:24 55M
netMm8.sql 19-Jan-2007 17:05 2.2K
netMm8.txt.gz 19-Jan-2007 17:06 41M
nscanGene.sql 14-Mar-2007 11:24 2.0K
nscanGene.txt.gz 14-Mar-2007 11:24 1.5M
nscanPep.sql 14-Mar-2007 11:24 1.1K
nscanPep.txt.gz 14-Mar-2007 11:24 4.0M
phastCons4way.sql 21-Jun-2007 10:47 1.7K
phastCons4way.txt.gz 21-Jun-2007 10:48 49M
phastConsElements4way.sql 21-Jun-2007 10:48 1.4K
phastConsElements4way.txt.gz 21-Jun-2007 10:49 3.3M
quality.sql 19-Jan-2007 17:06 1.7K
quality.txt.gz 19-Jan-2007 17:08 70M
refFlat.sql 28-May-2017 06:31 1.7K
refFlat.txt.gz 28-May-2017 06:31 31K
refGene.sql 28-May-2017 06:31 1.9K
refGene.txt.gz 28-May-2017 06:31 35K
refSeqAli.sql 19-Mar-2017 19:41 2.1K
refSeqAli.txt.gz 19-Mar-2017 19:41 42K
rmsk.sql 19-Jan-2007 17:08 1.9K
rmsk.txt.gz 19-Jan-2007 17:09 77M
sgpGene.sql 22-Dec-2007 12:46 1.9K
sgpGene.txt.gz 22-Dec-2007 12:46 1.7M
simpleRepeat.sql 19-Jan-2007 17:10 2.0K
simpleRepeat.txt.gz 19-Jan-2007 17:10 8.6M
tRNAs.sql 22-Apr-2012 23:54 1.7K
tRNAs.txt.gz 22-Apr-2012 23:54 69K
tableDescriptions.sql 16-Jul-2017 05:51 1.4K
tableDescriptions.txt.gz 16-Jul-2017 05:51 5.2K
tableList.sql 16-Jul-2017 05:51 1.5K
tableList.txt.gz 16-Jul-2017 05:51 3.7K
trackDb.sql 16-Jul-2017 05:51 2.0K
trackDb.txt.gz 16-Jul-2017 05:51 35K
xenoMrna.sql 21-Feb-2016 15:32 2.1K
xenoMrna.txt.gz 21-Feb-2016 15:34 294M
xenoRefFlat.sql 09-Jul-2017 09:04 1.7K
xenoRefFlat.txt.gz 09-Jul-2017 09:04 28M
xenoRefGene.sql 09-Jul-2017 09:04 1.9K
xenoRefGene.txt.gz 09-Jul-2017 09:05 31M
xenoRefSeqAli.sql 09-Jul-2017 09:04 2.1K
xenoRefSeqAli.txt.gz 09-Jul-2017 09:04 29M