This directory contains a dump of the UCSC genome annotation database for
the March 2006 assembly of the cat genome (felCat3, Broad Release 3).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Broad Institute at MIT and Harvard.
For more information on the cat genome, see the project website:
http://www.broad.mit.edu/mammals/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/felCat3/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
chainCanFam2.sql 19-Jan-2007 16:34 1.7K
chainCanFam2.txt.gz 19-Jan-2007 16:35 80M
chainCanFam2Link.sql 19-Jan-2007 16:35 1.4K
chainCanFam2Link.txt.gz 19-Jan-2007 16:41 522M
chainMm8.sql 19-Jan-2007 16:54 1.6K
chainMm8.txt.gz 19-Jan-2007 16:54 28M
chainMm8Link.sql 19-Jan-2007 16:55 1.4K
chainMm8Link.txt.gz 19-Jan-2007 16:57 237M
chromInfo.sql 19-Jan-2007 17:00 1.2K
chromInfo.txt.gz 19-Jan-2007 17:00 1.1M
contigAcc.sql 19-Jan-2007 17:00 1.2K
contigAcc.txt.gz 19-Jan-2007 17:00 4.0M
cpgIslandExt.sql 19-Jan-2007 17:00 1.6K
cpgIslandExt.txt.gz 19-Jan-2007 17:00 1.1M
gap.sql 19-Jan-2007 17:00 1.5K
gap.txt.gz 19-Jan-2007 17:00 6.7M
gc5Base.sql 19-Jan-2007 17:01 1.7K
gc5Base.txt.gz 19-Jan-2007 17:02 14M
genscan.sql 19-Jan-2007 17:02 1.6K
genscan.txt.gz 19-Jan-2007 17:02 2.7M
genscanPep.sql 19-Jan-2007 17:02 1.2K
genscanPep.txt.gz 19-Jan-2007 17:02 8.6M
genscanSubopt.sql 19-Jan-2007 17:02 1.5K
genscanSubopt.txt.gz 19-Jan-2007 17:02 5.8M
gold.sql 19-Jan-2007 17:02 1.6K
gold.txt.gz 19-Jan-2007 17:02 11M
microsat.sql 19-Jan-2007 17:02 1.3K
microsat.txt.gz 19-Jan-2007 17:02 658K
netCanFam2.sql 19-Jan-2007 17:02 2.2K
netCanFam2.txt.gz 19-Jan-2007 17:03 55M
netMm8.sql 19-Jan-2007 17:05 2.2K
netMm8.txt.gz 19-Jan-2007 17:06 41M
quality.sql 19-Jan-2007 17:06 1.7K
quality.txt.gz 19-Jan-2007 17:08 70M
rmsk.sql 19-Jan-2007 17:08 1.9K
rmsk.txt.gz 19-Jan-2007 17:09 77M
simpleRepeat.sql 19-Jan-2007 17:10 2.0K
simpleRepeat.txt.gz 19-Jan-2007 17:10 8.6M
geneid.sql 15-Feb-2007 09:38 1.9K
geneid.txt.gz 15-Feb-2007 09:38 5.4M
geneidPep.sql 15-Feb-2007 09:38 1.1K
geneidPep.txt.gz 15-Feb-2007 09:38 7.7M
nscanGene.sql 14-Mar-2007 11:24 2.0K
nscanGene.txt.gz 14-Mar-2007 11:24 1.5M
nscanPep.sql 14-Mar-2007 11:24 1.1K
nscanPep.txt.gz 14-Mar-2007 11:24 4.0M
extFile.sql 21-Jun-2007 10:45 1.3K
extFile.txt.gz 21-Jun-2007 10:45 83
multiz4way.sql 21-Jun-2007 10:45 1.4K
multiz4way.txt.gz 21-Jun-2007 10:46 61M
multiz4wayFrames.sql 21-Jun-2007 10:46 1.6K
multiz4wayFrames.txt.gz 21-Jun-2007 10:47 5.8M
multiz4waySummary.sql 21-Jun-2007 10:47 1.5K
multiz4waySummary.txt.gz 21-Jun-2007 10:47 23K
phastCons4way.sql 21-Jun-2007 10:47 1.7K
phastCons4way.txt.gz 21-Jun-2007 10:48 49M
phastConsElements4way.sql 21-Jun-2007 10:48 1.4K
phastConsElements4way.txt.gz 21-Jun-2007 10:49 3.3M
sgpGene.sql 22-Dec-2007 12:46 1.9K
sgpGene.txt.gz 22-Dec-2007 12:46 1.7M
chainHg19Link.sql 20-Sep-2009 09:21 1.5K
chainHg19Link.txt.gz 20-Sep-2009 09:22 341M
netHg19.sql 20-Sep-2009 09:24 2.3K
netHg19.txt.gz 20-Sep-2009 09:24 55M
chainHg19.sql 20-Sep-2009 09:24 1.8K
chainHg19.txt.gz 20-Sep-2009 09:24 35M
blastHg18KG.sql 20-Dec-2009 11:32 2.3K
blastHg18KG.txt.gz 20-Dec-2009 11:32 1.9M
history.sql 04-Jul-2010 15:39 1.6K
history.txt.gz 04-Jul-2010 15:39 530
tRNAs.sql 22-Apr-2012 23:54 1.7K
tRNAs.txt.gz 22-Apr-2012 23:54 69K
ensGene.sql 21-Oct-2012 03:37 1.9K
ensGene.txt.gz 21-Oct-2012 03:37 1.7M
ensemblGeneScaffold.sql 21-Oct-2012 03:37 1.7K
ensemblGeneScaffold.txt.gz 21-Oct-2012 03:37 818K
ensemblSource.sql 21-Oct-2012 03:37 1.4K
ensemblSource.txt.gz 21-Oct-2012 03:37 68K
ensemblToGeneName.sql 21-Oct-2012 03:37 1.4K
ensemblToGeneName.txt.gz 21-Oct-2012 03:37 104K
ensGtp.sql 21-Oct-2012 03:37 1.4K
ensGtp.txt.gz 21-Oct-2012 03:37 180K
ensPep.sql 21-Oct-2012 03:37 1.3K
ensPep.txt.gz 21-Oct-2012 03:37 4.0M
grp.sql 02-Mar-2014 03:40 1.4K
grp.txt.gz 02-Mar-2014 03:40 208
cpgIslandExtUnmasked.sql 01-Jun-2014 12:51 1.7K
cpgIslandExtUnmasked.txt.gz 01-Jun-2014 12:51 1.5M
xenoMrna.sql 21-Feb-2016 15:32 2.1K
xenoMrna.txt.gz 21-Feb-2016 15:34 294M
all_est.sql 15-May-2016 08:36 2.1K
all_est.txt.gz 15-May-2016 08:36 40K
estOrientInfo.sql 15-May-2016 08:36 1.8K
estOrientInfo.txt.gz 15-May-2016 08:36 13K
intronEst.sql 15-May-2016 08:36 2.1K
intronEst.txt.gz 15-May-2016 08:36 15K
refSeqAli.sql 19-Mar-2017 19:41 2.1K
refSeqAli.txt.gz 19-Mar-2017 19:41 42K
refGene.sql 28-May-2017 06:31 1.9K
refGene.txt.gz 28-May-2017 06:31 35K
refFlat.sql 28-May-2017 06:31 1.7K
refFlat.txt.gz 28-May-2017 06:31 31K
mrnaOrientInfo.sql 05-Jun-2017 10:11 1.8K
mrnaOrientInfo.txt.gz 05-Jun-2017 10:11 59K
all_mrna.sql 05-Jun-2017 10:13 2.1K
all_mrna.txt.gz 05-Jun-2017 10:13 209K
xenoRefFlat.sql 09-Jul-2017 09:04 1.7K
xenoRefFlat.txt.gz 09-Jul-2017 09:04 28M
xenoRefSeqAli.sql 09-Jul-2017 09:04 2.1K
xenoRefSeqAli.txt.gz 09-Jul-2017 09:04 29M
gbLoaded.sql 09-Jul-2017 09:04 1.6K
gbLoaded.txt.gz 09-Jul-2017 09:04 16K
xenoRefGene.sql 09-Jul-2017 09:04 1.9K
xenoRefGene.txt.gz 09-Jul-2017 09:05 31M
tableList.sql 16-Jul-2017 05:51 1.5K
tableList.txt.gz 16-Jul-2017 05:51 3.7K
trackDb.sql 16-Jul-2017 05:51 2.0K
trackDb.txt.gz 16-Jul-2017 05:51 35K
bigFiles.sql 16-Jul-2017 05:51 1.4K
bigFiles.txt.gz 16-Jul-2017 05:51 33
hgFindSpec.sql 16-Jul-2017 05:51 1.7K
hgFindSpec.txt.gz 16-Jul-2017 05:51 1.0K
tableDescriptions.sql 16-Jul-2017 05:51 1.4K
tableDescriptions.txt.gz 16-Jul-2017 05:51 5.2K