This directory contains a dump of the UCSC genome annotation database for
the March 2006 assembly of the cat genome (felCat3, Broad Release 3).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Broad Institute at MIT and Harvard.
For more information on the cat genome, see the project website:
http://www.broad.mit.edu/mammals/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/felCat3/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
xenoRefSeqAli.txt.gz 09-Jul-2017 09:04 29M
xenoRefSeqAli.sql 09-Jul-2017 09:04 2.1K
xenoRefGene.txt.gz 09-Jul-2017 09:05 31M
xenoRefGene.sql 09-Jul-2017 09:04 1.9K
xenoRefFlat.txt.gz 09-Jul-2017 09:04 28M
xenoRefFlat.sql 09-Jul-2017 09:04 1.7K
xenoMrna.txt.gz 21-Feb-2016 15:34 294M
xenoMrna.sql 21-Feb-2016 15:32 2.1K
trackDb.txt.gz 16-Jul-2017 05:51 35K
trackDb.sql 16-Jul-2017 05:51 2.0K
tableList.txt.gz 16-Jul-2017 05:51 3.7K
tableList.sql 16-Jul-2017 05:51 1.5K
tableDescriptions.txt.gz 16-Jul-2017 05:51 5.2K
tableDescriptions.sql 16-Jul-2017 05:51 1.4K
tRNAs.txt.gz 22-Apr-2012 23:54 69K
tRNAs.sql 22-Apr-2012 23:54 1.7K
simpleRepeat.txt.gz 19-Jan-2007 17:10 8.6M
simpleRepeat.sql 19-Jan-2007 17:10 2.0K
sgpGene.txt.gz 22-Dec-2007 12:46 1.7M
sgpGene.sql 22-Dec-2007 12:46 1.9K
rmsk.txt.gz 19-Jan-2007 17:09 77M
rmsk.sql 19-Jan-2007 17:08 1.9K
refSeqAli.txt.gz 19-Mar-2017 19:41 42K
refSeqAli.sql 19-Mar-2017 19:41 2.1K
refGene.txt.gz 28-May-2017 06:31 35K
refGene.sql 28-May-2017 06:31 1.9K
refFlat.txt.gz 28-May-2017 06:31 31K
refFlat.sql 28-May-2017 06:31 1.7K
quality.txt.gz 19-Jan-2007 17:08 70M
quality.sql 19-Jan-2007 17:06 1.7K
phastConsElements4way.txt.gz 21-Jun-2007 10:49 3.3M
phastConsElements4way.sql 21-Jun-2007 10:48 1.4K
phastCons4way.txt.gz 21-Jun-2007 10:48 49M
phastCons4way.sql 21-Jun-2007 10:47 1.7K
nscanPep.txt.gz 14-Mar-2007 11:24 4.0M
nscanPep.sql 14-Mar-2007 11:24 1.1K
nscanGene.txt.gz 14-Mar-2007 11:24 1.5M
nscanGene.sql 14-Mar-2007 11:24 2.0K
netMm8.txt.gz 19-Jan-2007 17:06 41M
netMm8.sql 19-Jan-2007 17:05 2.2K
netHg19.txt.gz 20-Sep-2009 09:24 55M
netHg19.sql 20-Sep-2009 09:24 2.3K
netCanFam2.txt.gz 19-Jan-2007 17:03 55M
netCanFam2.sql 19-Jan-2007 17:02 2.2K
multiz4waySummary.txt.gz 21-Jun-2007 10:47 23K
multiz4waySummary.sql 21-Jun-2007 10:47 1.5K
multiz4wayFrames.txt.gz 21-Jun-2007 10:47 5.8M
multiz4wayFrames.sql 21-Jun-2007 10:46 1.6K
multiz4way.txt.gz 21-Jun-2007 10:46 61M
multiz4way.sql 21-Jun-2007 10:45 1.4K
mrnaOrientInfo.txt.gz 05-Jun-2017 10:11 59K
mrnaOrientInfo.sql 05-Jun-2017 10:11 1.8K
microsat.txt.gz 19-Jan-2007 17:02 658K
microsat.sql 19-Jan-2007 17:02 1.3K
intronEst.txt.gz 15-May-2016 08:36 15K
intronEst.sql 15-May-2016 08:36 2.1K
history.txt.gz 04-Jul-2010 15:39 530
history.sql 04-Jul-2010 15:39 1.6K
hgFindSpec.txt.gz 16-Jul-2017 05:51 1.0K
hgFindSpec.sql 16-Jul-2017 05:51 1.7K
grp.txt.gz 02-Mar-2014 03:40 208
grp.sql 02-Mar-2014 03:40 1.4K
gold.txt.gz 19-Jan-2007 17:02 11M
gold.sql 19-Jan-2007 17:02 1.6K
genscanSubopt.txt.gz 19-Jan-2007 17:02 5.8M
genscanSubopt.sql 19-Jan-2007 17:02 1.5K
genscanPep.txt.gz 19-Jan-2007 17:02 8.6M
genscanPep.sql 19-Jan-2007 17:02 1.2K
genscan.txt.gz 19-Jan-2007 17:02 2.7M
genscan.sql 19-Jan-2007 17:02 1.6K
geneidPep.txt.gz 15-Feb-2007 09:38 7.7M
geneidPep.sql 15-Feb-2007 09:38 1.1K
geneid.txt.gz 15-Feb-2007 09:38 5.4M
geneid.sql 15-Feb-2007 09:38 1.9K
gc5Base.txt.gz 19-Jan-2007 17:02 14M
gc5Base.sql 19-Jan-2007 17:01 1.7K
gbLoaded.txt.gz 09-Jul-2017 09:04 16K
gbLoaded.sql 09-Jul-2017 09:04 1.6K
gap.txt.gz 19-Jan-2007 17:00 6.7M
gap.sql 19-Jan-2007 17:00 1.5K
extFile.txt.gz 21-Jun-2007 10:45 83
extFile.sql 21-Jun-2007 10:45 1.3K
estOrientInfo.txt.gz 15-May-2016 08:36 13K
estOrientInfo.sql 15-May-2016 08:36 1.8K
ensemblToGeneName.txt.gz 21-Oct-2012 03:37 104K
ensemblToGeneName.sql 21-Oct-2012 03:37 1.4K
ensemblSource.txt.gz 21-Oct-2012 03:37 68K
ensemblSource.sql 21-Oct-2012 03:37 1.4K
ensemblGeneScaffold.txt.gz 21-Oct-2012 03:37 818K
ensemblGeneScaffold.sql 21-Oct-2012 03:37 1.7K
ensPep.txt.gz 21-Oct-2012 03:37 4.0M
ensPep.sql 21-Oct-2012 03:37 1.3K
ensGtp.txt.gz 21-Oct-2012 03:37 180K
ensGtp.sql 21-Oct-2012 03:37 1.4K
ensGene.txt.gz 21-Oct-2012 03:37 1.7M
ensGene.sql 21-Oct-2012 03:37 1.9K
cpgIslandExtUnmasked.txt.gz 01-Jun-2014 12:51 1.5M
cpgIslandExtUnmasked.sql 01-Jun-2014 12:51 1.7K
cpgIslandExt.txt.gz 19-Jan-2007 17:00 1.1M
cpgIslandExt.sql 19-Jan-2007 17:00 1.6K
contigAcc.txt.gz 19-Jan-2007 17:00 4.0M
contigAcc.sql 19-Jan-2007 17:00 1.2K
chromInfo.txt.gz 19-Jan-2007 17:00 1.1M
chromInfo.sql 19-Jan-2007 17:00 1.2K
chainMm8Link.txt.gz 19-Jan-2007 16:57 237M
chainMm8Link.sql 19-Jan-2007 16:55 1.4K
chainMm8.txt.gz 19-Jan-2007 16:54 28M
chainMm8.sql 19-Jan-2007 16:54 1.6K
chainHg19Link.txt.gz 20-Sep-2009 09:22 341M
chainHg19Link.sql 20-Sep-2009 09:21 1.5K
chainHg19.txt.gz 20-Sep-2009 09:24 35M
chainHg19.sql 20-Sep-2009 09:24 1.8K
chainCanFam2Link.txt.gz 19-Jan-2007 16:41 522M
chainCanFam2Link.sql 19-Jan-2007 16:35 1.4K
chainCanFam2.txt.gz 19-Jan-2007 16:35 80M
chainCanFam2.sql 19-Jan-2007 16:34 1.7K
blastHg18KG.txt.gz 20-Dec-2009 11:32 1.9M
blastHg18KG.sql 20-Dec-2009 11:32 2.3K
bigFiles.txt.gz 16-Jul-2017 05:51 33
bigFiles.sql 16-Jul-2017 05:51 1.4K
all_mrna.txt.gz 05-Jun-2017 10:13 209K
all_mrna.sql 05-Jun-2017 10:13 2.1K
all_est.txt.gz 15-May-2016 08:36 40K
all_est.sql 15-May-2016 08:36 2.1K