This directory contains a dump of the UCSC genome annotation database for
the March 2006 assembly of the cat genome (felCat3, Broad Release 3).
The annotations were generated by UCSC and collaborators worldwide.
This assembly was produced by the Broad Institute at MIT and Harvard.
For more information on the cat genome, see the project website:
http://www.broad.mit.edu/mammals/
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=felCat3
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
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If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/felCat3/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
bigFiles.txt.gz 16-Jul-2017 05:51 33
extFile.txt.gz 21-Jun-2007 10:45 83
grp.txt.gz 02-Mar-2014 03:40 208
history.txt.gz 04-Jul-2010 15:39 530
hgFindSpec.txt.gz 16-Jul-2017 05:51 1.0K
nscanPep.sql 14-Mar-2007 11:24 1.1K
geneidPep.sql 15-Feb-2007 09:38 1.1K
genscanPep.sql 19-Jan-2007 17:02 1.2K
contigAcc.sql 19-Jan-2007 17:00 1.2K
chromInfo.sql 19-Jan-2007 17:00 1.2K
extFile.sql 21-Jun-2007 10:45 1.3K
ensPep.sql 21-Oct-2012 03:37 1.3K
microsat.sql 19-Jan-2007 17:02 1.3K
bigFiles.sql 16-Jul-2017 05:51 1.4K
ensemblSource.sql 21-Oct-2012 03:37 1.4K
grp.sql 02-Mar-2014 03:40 1.4K
ensemblToGeneName.sql 21-Oct-2012 03:37 1.4K
tableDescriptions.sql 16-Jul-2017 05:51 1.4K
chainMm8Link.sql 19-Jan-2007 16:55 1.4K
multiz4way.sql 21-Jun-2007 10:45 1.4K
chainCanFam2Link.sql 19-Jan-2007 16:35 1.4K
ensGtp.sql 21-Oct-2012 03:37 1.4K
phastConsElements4way.sql 21-Jun-2007 10:48 1.4K
genscanSubopt.sql 19-Jan-2007 17:02 1.5K
multiz4waySummary.sql 21-Jun-2007 10:47 1.5K
gap.sql 19-Jan-2007 17:00 1.5K
chainHg19Link.sql 20-Sep-2009 09:21 1.5K
tableList.sql 16-Jul-2017 05:51 1.5K
history.sql 04-Jul-2010 15:39 1.6K
multiz4wayFrames.sql 21-Jun-2007 10:46 1.6K
gbLoaded.sql 09-Jul-2017 09:04 1.6K
genscan.sql 19-Jan-2007 17:02 1.6K
gold.sql 19-Jan-2007 17:02 1.6K
cpgIslandExt.sql 19-Jan-2007 17:00 1.6K
chainMm8.sql 19-Jan-2007 16:54 1.6K
chainCanFam2.sql 19-Jan-2007 16:34 1.7K
ensemblGeneScaffold.sql 21-Oct-2012 03:37 1.7K
tRNAs.sql 22-Apr-2012 23:54 1.7K
refFlat.sql 28-May-2017 06:31 1.7K
cpgIslandExtUnmasked.sql 01-Jun-2014 12:51 1.7K
gc5Base.sql 19-Jan-2007 17:01 1.7K
quality.sql 19-Jan-2007 17:06 1.7K
xenoRefFlat.sql 09-Jul-2017 09:04 1.7K
hgFindSpec.sql 16-Jul-2017 05:51 1.7K
phastCons4way.sql 21-Jun-2007 10:47 1.7K
estOrientInfo.sql 15-May-2016 08:36 1.8K
chainHg19.sql 20-Sep-2009 09:24 1.8K
mrnaOrientInfo.sql 05-Jun-2017 10:11 1.8K
rmsk.sql 19-Jan-2007 17:08 1.9K
geneid.sql 15-Feb-2007 09:38 1.9K
refGene.sql 28-May-2017 06:31 1.9K
ensGene.sql 21-Oct-2012 03:37 1.9K
sgpGene.sql 22-Dec-2007 12:46 1.9K
xenoRefGene.sql 09-Jul-2017 09:04 1.9K
simpleRepeat.sql 19-Jan-2007 17:10 2.0K
nscanGene.sql 14-Mar-2007 11:24 2.0K
trackDb.sql 16-Jul-2017 05:51 2.0K
all_est.sql 15-May-2016 08:36 2.1K
all_mrna.sql 05-Jun-2017 10:13 2.1K
xenoMrna.sql 21-Feb-2016 15:32 2.1K
intronEst.sql 15-May-2016 08:36 2.1K
refSeqAli.sql 19-Mar-2017 19:41 2.1K
xenoRefSeqAli.sql 09-Jul-2017 09:04 2.1K
netMm8.sql 19-Jan-2007 17:05 2.2K
netCanFam2.sql 19-Jan-2007 17:02 2.2K
blastHg18KG.sql 20-Dec-2009 11:32 2.3K
netHg19.sql 20-Sep-2009 09:24 2.3K
tableList.txt.gz 16-Jul-2017 05:51 3.7K
tableDescriptions.txt.gz 16-Jul-2017 05:51 5.2K
estOrientInfo.txt.gz 15-May-2016 08:36 13K
intronEst.txt.gz 15-May-2016 08:36 15K
gbLoaded.txt.gz 09-Jul-2017 09:04 16K
multiz4waySummary.txt.gz 21-Jun-2007 10:47 23K
refFlat.txt.gz 28-May-2017 06:31 31K
trackDb.txt.gz 16-Jul-2017 05:51 35K
refGene.txt.gz 28-May-2017 06:31 35K
all_est.txt.gz 15-May-2016 08:36 40K
refSeqAli.txt.gz 19-Mar-2017 19:41 42K
mrnaOrientInfo.txt.gz 05-Jun-2017 10:11 59K
ensemblSource.txt.gz 21-Oct-2012 03:37 68K
tRNAs.txt.gz 22-Apr-2012 23:54 69K
ensemblToGeneName.txt.gz 21-Oct-2012 03:37 104K
ensGtp.txt.gz 21-Oct-2012 03:37 180K
all_mrna.txt.gz 05-Jun-2017 10:13 209K
microsat.txt.gz 19-Jan-2007 17:02 658K
ensemblGeneScaffold.txt.gz 21-Oct-2012 03:37 818K
cpgIslandExt.txt.gz 19-Jan-2007 17:00 1.1M
chromInfo.txt.gz 19-Jan-2007 17:00 1.1M
nscanGene.txt.gz 14-Mar-2007 11:24 1.5M
cpgIslandExtUnmasked.txt.gz 01-Jun-2014 12:51 1.5M
sgpGene.txt.gz 22-Dec-2007 12:46 1.7M
ensGene.txt.gz 21-Oct-2012 03:37 1.7M
blastHg18KG.txt.gz 20-Dec-2009 11:32 1.9M
genscan.txt.gz 19-Jan-2007 17:02 2.7M
phastConsElements4way.txt.gz 21-Jun-2007 10:49 3.3M
contigAcc.txt.gz 19-Jan-2007 17:00 4.0M
nscanPep.txt.gz 14-Mar-2007 11:24 4.0M
ensPep.txt.gz 21-Oct-2012 03:37 4.0M
geneid.txt.gz 15-Feb-2007 09:38 5.4M
genscanSubopt.txt.gz 19-Jan-2007 17:02 5.8M
multiz4wayFrames.txt.gz 21-Jun-2007 10:47 5.8M
gap.txt.gz 19-Jan-2007 17:00 6.7M
geneidPep.txt.gz 15-Feb-2007 09:38 7.7M
simpleRepeat.txt.gz 19-Jan-2007 17:10 8.6M
genscanPep.txt.gz 19-Jan-2007 17:02 8.6M
gold.txt.gz 19-Jan-2007 17:02 11M
gc5Base.txt.gz 19-Jan-2007 17:02 14M
xenoRefFlat.txt.gz 09-Jul-2017 09:04 28M
chainMm8.txt.gz 19-Jan-2007 16:54 28M
xenoRefSeqAli.txt.gz 09-Jul-2017 09:04 29M
xenoRefGene.txt.gz 09-Jul-2017 09:05 31M
chainHg19.txt.gz 20-Sep-2009 09:24 35M
netMm8.txt.gz 19-Jan-2007 17:06 41M
phastCons4way.txt.gz 21-Jun-2007 10:48 49M
netCanFam2.txt.gz 19-Jan-2007 17:03 55M
netHg19.txt.gz 20-Sep-2009 09:24 55M
multiz4way.txt.gz 21-Jun-2007 10:46 61M
quality.txt.gz 19-Jan-2007 17:08 70M
rmsk.txt.gz 19-Jan-2007 17:09 77M
chainCanFam2.txt.gz 19-Jan-2007 16:35 80M
chainMm8Link.txt.gz 19-Jan-2007 16:57 237M
xenoMrna.txt.gz 21-Feb-2016 15:34 294M
chainHg19Link.txt.gz 20-Sep-2009 09:22 341M
chainCanFam2Link.txt.gz 19-Jan-2007 16:41 522M