This directory contains the v.3.0 draft assembly of the Fugu
rubripes genome (fr1, Aug. 2002) provided by the US DOE Joint
Genome Institute (JGI). The annotations are from UCSC and collaborators
worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=fr1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/fr1/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
trackDb.txt.gz 2023-03-28 13:49 21K
trackDb.sql 2023-03-28 13:49 2.1K
tableList.txt.gz 2024-12-08 03:31 3.1K
tableList.sql 2024-12-08 03:31 1.6K
tableDescriptions.txt.gz 2024-12-07 02:03 5.6K
tableDescriptions.sql 2024-12-07 02:03 1.5K
simpleRepeat.txt.gz 2003-09-24 11:07 2.0M
simpleRepeat.sql 2013-10-01 12:48 1.1K
seq.txt.gz 2003-11-18 10:10 28
seq.sql 2013-10-01 12:48 588
netMm8.txt.gz 2006-04-28 03:43 4.8M
netMm8.sql 2013-10-01 12:48 1.3K
netHg18.txt.gz 2006-04-16 07:22 4.9M
netHg18.sql 2013-10-01 12:48 1.3K
netGasAcu1.txt.gz 2007-03-29 09:33 10M
netGasAcu1.sql 2007-03-29 09:32 2.2K
netDanRer4.txt.gz 2006-05-29 02:37 9.1M
netDanRer4.sql 2006-05-29 02:37 2.2K
mrnaOrientInfo.txt.gz 2020-05-08 00:49 19K
mrnaOrientInfo.sql 2020-05-08 00:49 1.8K
microsat.txt.gz 2015-08-23 16:25 136K
microsat.sql 2015-08-23 16:25 1.5K
history.txt.gz 2003-09-24 11:07 263
history.sql 2013-10-01 12:48 499
hgFindSpec.txt.gz 2023-03-28 13:49 738
hgFindSpec.sql 2023-03-28 13:49 1.8K
grp.txt.gz 2014-03-02 03:40 223
grp.sql 2014-03-02 03:40 1.4K
genscanPep.txt.gz 2003-09-24 11:07 8.6M
genscanPep.sql 2013-10-01 12:48 328
genscan.txt.gz 2003-09-24 11:07 2.1M
genscan.sql 2013-10-01 12:48 740
genomicSuperDups.txt.gz 2006-07-05 07:02 5.4M
genomicSuperDups.sql 2006-07-05 07:02 2.5K
gcPercent.txt.gz 2003-09-24 11:07 108K
gcPercent.sql 2013-10-01 12:48 544
gbLoaded.txt.gz 2020-08-21 19:59 41K
gbLoaded.sql 2020-08-21 19:59 1.6K
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
gbDelete_tmp.sql 2013-10-01 12:48 322
extFile.txt.gz 2003-11-18 10:10 32
extFile.sql 2013-10-01 12:48 443
estOrientInfo.txt.gz 2019-03-17 09:24 3.3M
estOrientInfo.sql 2019-03-17 09:24 1.8K
ensPep.txt.gz 2003-11-18 10:11 4.9M
ensPep.sql 2013-10-01 12:48 320
ensGtp.txt.gz 2003-11-18 10:11 273K
ensGtp.sql 2013-10-01 12:48 436
ensGene.txt.gz 2003-09-24 11:07 1.6M
ensGene.sql 2013-10-01 12:48 740
ecoresRn3.txt.gz 2004-06-10 09:51 1.0M
ecoresRn3.sql 2013-10-01 12:48 942
ecoresHg16.txt.gz 2004-06-10 09:51 1.0M
ecoresHg16.sql 2013-10-01 12:48 944
cpgIsland.txt.gz 2003-09-24 11:07 754K
cpgIsland.sql 2013-10-01 12:48 706
chromInfo.txt.gz 2003-09-24 11:07 70
chromInfo.sql 2013-10-01 12:48 394
chrUn_rmsk.txt.gz 2003-09-24 11:07 3.8M
chrUn_rmsk.sql 2013-10-01 12:48 1.0K
chrUn_mrna.txt.gz 2020-05-08 00:49 77K
chrUn_mrna.sql 2020-05-08 00:49 2.1K
chrUn_intronEst.txt.gz 2019-03-17 09:24 7.6M
chrUn_intronEst.sql 2019-03-17 09:24 2.1K
chrUn_gold.txt.gz 2003-09-24 11:07 326K
chrUn_gold.sql 2013-10-01 12:48 781
chrUn_gap.txt.gz 2003-09-30 06:53 476K
chrUn_gap.sql 2013-10-01 12:48 704
chrUn_est.txt.gz 2019-03-17 09:24 14M
chrUn_est.sql 2019-03-17 09:24 2.1K
chrUn_chainMm8Link.txt.gz 2006-04-28 03:42 34M
chrUn_chainMm8Link.sql 2013-10-01 12:48 573
chrUn_chainMm8.txt.gz 2006-04-28 03:42 6.1M
chrUn_chainMm8.sql 2013-10-01 12:48 808
chrUn_chainHg18Link.txt.gz 2006-04-16 07:21 54M
chrUn_chainHg18Link.sql 2013-10-01 12:48 575
chrUn_chainHg18.txt.gz 2006-04-16 07:20 12M
chrUn_chainHg18.sql 2013-10-01 12:48 852
chrUn_chainGasAcu1Link.txt.gz 2007-03-29 09:35 99M
chrUn_chainGasAcu1Link.sql 2007-03-29 09:33 1.4K
chrUn_chainGasAcu1.txt.gz 2007-03-29 09:33 11M
chrUn_chainGasAcu1.sql 2007-03-29 09:33 1.7K
chrUn_chainDanRer4Link.txt.gz 2006-05-29 02:30 103M
chrUn_chainDanRer4Link.sql 2006-05-29 02:26 1.4K
chrUn_chainDanRer4.txt.gz 2006-05-29 02:26 17M
chrUn_chainDanRer4.sql 2006-05-29 02:25 1.6K
chrUn_blatHg16.txt.gz 2003-09-24 11:07 13M
chrUn_blatHg16.sql 2013-10-01 12:48 1.3K
blastHg17KG.txt.gz 2005-05-14 05:58 3.2M
blastHg17KG.sql 2013-10-01 12:48 1.3K
bigFiles.txt.gz 2024-12-08 03:31 33
bigFiles.sql 2024-12-08 03:31 1.4K
augustusGene.txt.gz 2015-07-26 13:30 2.6M
augustusGene.sql 2015-07-26 13:30 1.9K
all_mrna.txt.gz 2020-05-08 00:49 77K
all_mrna.sql 2020-05-08 00:49 2.1K
all_est.txt.gz 2019-03-17 09:24 14M
all_est.sql 2019-03-17 09:24 2.1K