This directory contains the v.3.0 draft assembly of the Fugu
rubripes genome (fr1, Aug. 2002) provided by the US DOE Joint
Genome Institute (JGI). The annotations are from UCSC and collaborators
worldwide.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=fr1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/fr1/database/. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the annotations in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
seq.txt.gz 2003-11-18 10:10 28
extFile.txt.gz 2003-11-18 10:10 32
bigFiles.txt.gz 2024-12-29 03:28 33
chromInfo.txt.gz 2003-09-24 11:07 70
grp.txt.gz 2014-03-02 03:40 223
history.txt.gz 2003-09-24 11:07 263
ensPep.sql 2013-10-01 12:48 320
gbDelete_tmp.sql 2013-10-01 12:48 322
genscanPep.sql 2013-10-01 12:48 328
chromInfo.sql 2013-10-01 12:48 394
ensGtp.sql 2013-10-01 12:48 436
extFile.sql 2013-10-01 12:48 443
history.sql 2013-10-01 12:48 499
gcPercent.sql 2013-10-01 12:48 544
chrUn_chainMm8Link.sql 2013-10-01 12:48 573
chrUn_chainHg18Link.sql 2013-10-01 12:48 575
seq.sql 2013-10-01 12:48 588
chrUn_gap.sql 2013-10-01 12:48 704
cpgIsland.sql 2013-10-01 12:48 706
hgFindSpec.txt.gz 2023-03-28 13:49 738
ensGene.sql 2013-10-01 12:48 740
genscan.sql 2013-10-01 12:48 740
chrUn_gold.sql 2013-10-01 12:48 781
chrUn_chainMm8.sql 2013-10-01 12:48 808
chrUn_chainHg18.sql 2013-10-01 12:48 852
ecoresRn3.sql 2013-10-01 12:48 942
ecoresHg16.sql 2013-10-01 12:48 944
chrUn_rmsk.sql 2013-10-01 12:48 1.0K
simpleRepeat.sql 2013-10-01 12:48 1.1K
chrUn_blatHg16.sql 2013-10-01 12:48 1.3K
netMm8.sql 2013-10-01 12:48 1.3K
netHg18.sql 2013-10-01 12:48 1.3K
blastHg17KG.sql 2013-10-01 12:48 1.3K
grp.sql 2014-03-02 03:40 1.4K
chrUn_chainDanRer4Link.sql 2006-05-29 02:26 1.4K
bigFiles.sql 2024-12-29 03:28 1.4K
chrUn_chainGasAcu1Link.sql 2007-03-29 09:33 1.4K
tableDescriptions.sql 2024-12-28 02:05 1.5K
microsat.sql 2015-08-23 16:25 1.5K
tableList.sql 2024-12-29 03:28 1.6K
gbLoaded.sql 2020-08-21 19:59 1.6K
chrUn_chainDanRer4.sql 2006-05-29 02:25 1.6K
chrUn_chainGasAcu1.sql 2007-03-29 09:33 1.7K
hgFindSpec.sql 2023-03-28 13:49 1.8K
estOrientInfo.sql 2019-03-17 09:24 1.8K
mrnaOrientInfo.sql 2020-05-08 00:49 1.8K
augustusGene.sql 2015-07-26 13:30 1.9K
trackDb.sql 2023-03-28 13:49 2.1K
chrUn_est.sql 2019-03-17 09:24 2.1K
all_est.sql 2019-03-17 09:24 2.1K
chrUn_intronEst.sql 2019-03-17 09:24 2.1K
chrUn_mrna.sql 2020-05-08 00:49 2.1K
all_mrna.sql 2020-05-08 00:49 2.1K
netDanRer4.sql 2006-05-29 02:37 2.2K
netGasAcu1.sql 2007-03-29 09:32 2.2K
genomicSuperDups.sql 2006-07-05 07:02 2.5K
tableList.txt.gz 2024-12-29 03:28 3.1K
tableDescriptions.txt.gz 2024-12-28 02:05 5.6K
mrnaOrientInfo.txt.gz 2020-05-08 00:49 19K
trackDb.txt.gz 2023-03-28 13:49 21K
gbLoaded.txt.gz 2020-08-21 19:59 41K
all_mrna.txt.gz 2020-05-08 00:49 77K
chrUn_mrna.txt.gz 2020-05-08 00:49 77K
gcPercent.txt.gz 2003-09-24 11:07 108K
microsat.txt.gz 2015-08-23 16:25 136K
gbDelete_tmp.txt.gz 2005-09-27 05:01 180K
ensGtp.txt.gz 2003-11-18 10:11 273K
chrUn_gold.txt.gz 2003-09-24 11:07 326K
chrUn_gap.txt.gz 2003-09-30 06:53 476K
cpgIsland.txt.gz 2003-09-24 11:07 754K
ecoresRn3.txt.gz 2004-06-10 09:51 1.0M
ecoresHg16.txt.gz 2004-06-10 09:51 1.0M
ensGene.txt.gz 2003-09-24 11:07 1.6M
simpleRepeat.txt.gz 2003-09-24 11:07 2.0M
genscan.txt.gz 2003-09-24 11:07 2.1M
augustusGene.txt.gz 2015-07-26 13:30 2.6M
blastHg17KG.txt.gz 2005-05-14 05:58 3.2M
estOrientInfo.txt.gz 2019-03-17 09:24 3.3M
chrUn_rmsk.txt.gz 2003-09-24 11:07 3.8M
netMm8.txt.gz 2006-04-28 03:43 4.8M
netHg18.txt.gz 2006-04-16 07:22 4.9M
ensPep.txt.gz 2003-11-18 10:11 4.9M
genomicSuperDups.txt.gz 2006-07-05 07:02 5.4M
chrUn_chainMm8.txt.gz 2006-04-28 03:42 6.1M
chrUn_intronEst.txt.gz 2019-03-17 09:24 7.6M
genscanPep.txt.gz 2003-09-24 11:07 8.6M
netDanRer4.txt.gz 2006-05-29 02:37 9.1M
netGasAcu1.txt.gz 2007-03-29 09:33 10M
chrUn_chainGasAcu1.txt.gz 2007-03-29 09:33 11M
chrUn_chainHg18.txt.gz 2006-04-16 07:20 12M
chrUn_blatHg16.txt.gz 2003-09-24 11:07 13M
all_est.txt.gz 2019-03-17 09:24 14M
chrUn_est.txt.gz 2019-03-17 09:24 14M
chrUn_chainDanRer4.txt.gz 2006-05-29 02:26 17M
chrUn_chainMm8Link.txt.gz 2006-04-28 03:42 34M
chrUn_chainHg18Link.txt.gz 2006-04-16 07:21 54M
chrUn_chainGasAcu1Link.txt.gz 2007-03-29 09:35 99M
chrUn_chainDanRer4Link.txt.gz 2006-05-29 02:30 103M