This directory contains a dump of the UCSC genome annotation database for the
    Mar. 2018 (GRCg6a/galGal6) assembly of the chicken genome
    (galGal6, Genome Reference Consortium) 
from the Chicken Genome Sequencing Consortium.

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    https://www.ncbi.nlm.nih.gov/genome/111
    https://www.ncbi.nlm.nih.gov/genome/assembly/1668981
    https://www.ncbi.nlm.nih.gov/bioproject/13342

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=galGal6
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/galGal6/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/galGal6/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/galGal6/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/galGal6/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/galGal6/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql galGal6 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql galGal6 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

-----------------------------------------------------------------------------
GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                          Last modified      Size  Description
Parent Directory - all_est.sql 2018-11-14 11:32 2.1K all_est.txt.gz 2018-11-14 11:32 35M all_mrna.sql 2018-11-14 11:32 2.1K all_mrna.txt.gz 2018-11-14 11:32 1.9M augustusGene.sql 2018-11-14 11:32 1.9K augustusGene.txt.gz 2018-11-14 11:32 1.6M bigFiles.sql 2024-10-13 03:06 1.4K bigFiles.txt.gz 2024-10-13 03:06 144 chainAcaChl1.sql 2019-01-20 08:23 1.7K chainAcaChl1.txt.gz 2019-01-20 08:23 450M chainAcaChl1Link.sql 2019-01-20 08:25 1.5K chainAcaChl1Link.txt.gz 2019-01-20 08:27 2.3G chainAllMis1.sql 2019-01-20 08:35 1.7K chainAllMis1.txt.gz 2019-01-20 08:35 25M chainAllMis1Link.sql 2019-01-20 08:35 1.5K chainAllMis1Link.txt.gz 2019-01-20 08:35 279M chainAllSin1.sql 2019-01-20 08:36 1.7K chainAllSin1.txt.gz 2019-01-20 08:36 27M chainAllSin1Link.sql 2019-01-20 08:37 1.5K chainAllSin1Link.txt.gz 2019-01-20 08:37 278M chainAmaVit1.sql 2019-01-20 08:38 1.7K chainAmaVit1.txt.gz 2019-01-20 08:38 436M chainAmaVit1Link.sql 2019-01-20 08:40 1.5K chainAmaVit1Link.txt.gz 2019-01-20 08:42 1.8G chainAnaPla1.sql 2019-01-20 08:48 1.7K chainAnaPla1.txt.gz 2019-01-20 08:49 538M chainAnaPla1Link.sql 2019-01-20 08:50 1.5K chainAnaPla1Link.txt.gz 2019-01-20 08:54 2.8G chainAngJap1.sql 2019-01-20 09:04 1.7K chainAngJap1.txt.gz 2019-01-20 09:04 12M chainAngJap1Link.sql 2019-01-20 09:04 1.5K chainAngJap1Link.txt.gz 2019-01-20 09:04 49M chainAnoCar2.sql 2019-01-20 09:04 1.7K chainAnoCar2.txt.gz 2019-01-20 09:04 21M chainAnoCar2Link.sql 2019-01-20 09:04 1.5K chainAnoCar2Link.txt.gz 2019-01-20 09:04 117M chainApaSpi1.sql 2019-01-20 09:05 1.7K chainApaSpi1.txt.gz 2019-01-20 09:05 92M chainApaSpi1Link.sql 2019-01-20 09:05 1.5K chainApaSpi1Link.txt.gz 2019-01-20 09:06 466M chainApaVit1.sql 2019-01-20 09:07 1.7K chainApaVit1.txt.gz 2019-01-20 09:08 456M chainApaVit1Link.sql 2019-01-20 09:09 1.5K chainApaVit1Link.txt.gz 2019-01-20 09:12 2.3G chainAptFor1.sql 2019-01-20 09:20 1.7K chainAptFor1.txt.gz 2019-01-20 09:20 319M chainAptFor1Link.sql 2019-01-20 09:21 1.5K chainAptFor1Link.txt.gz 2019-01-20 09:24 1.7G chainAquChr2.sql 2019-01-20 09:30 1.7K chainAquChr2.txt.gz 2019-01-20 09:30 339M chainAquChr2Link.sql 2019-01-20 09:31 1.5K chainAquChr2Link.txt.gz 2019-01-20 09:33 1.9G chainAraMac1.sql 2019-01-20 09:40 1.7K chainAraMac1.txt.gz 2019-01-20 09:41 389M chainAraMac1Link.sql 2019-01-20 09:42 1.5K chainAraMac1Link.txt.gz 2019-01-20 09:44 1.7G chainBalPav1.sql 2019-01-20 09:50 1.7K chainBalPav1.txt.gz 2019-01-20 09:50 359M chainBalPav1Link.sql 2019-01-20 09:51 1.5K chainBalPav1Link.txt.gz 2019-01-20 09:53 1.8G chainBucRhi1.sql 2019-01-20 10:02 1.7K chainBucRhi1.txt.gz 2019-01-20 10:03 416M chainBucRhi1Link.sql 2019-01-20 10:04 1.5K chainBucRhi1Link.txt.gz 2019-01-20 10:07 2.1G chainCalAnn1.sql 2019-01-20 10:14 1.7K chainCalAnn1.txt.gz 2019-01-20 10:14 515M chainCalAnn1Link.sql 2019-01-20 10:16 1.5K chainCalAnn1Link.txt.gz 2019-01-20 10:19 2.8G chainCapCar1.sql 2019-01-20 10:29 1.7K chainCapCar1.txt.gz 2019-01-20 10:30 421M chainCapCar1Link.sql 2019-01-20 10:31 1.5K chainCapCar1Link.txt.gz 2019-01-20 10:34 2.1G chainCarCri1.sql 2019-01-20 10:41 1.7K chainCarCri1.txt.gz 2019-01-20 10:41 406M chainCarCri1Link.sql 2019-01-20 10:42 1.5K chainCarCri1Link.txt.gz 2019-01-20 10:45 2.0G chainChaVoc2.sql 2019-01-20 10:52 1.7K chainChaVoc2.txt.gz 2019-01-20 10:52 366M chainChaVoc2Link.sql 2019-01-20 10:53 1.5K chainChaVoc2Link.txt.gz 2019-01-20 10:56 2.0G chainCheMyd1.sql 2019-01-20 11:03 1.7K chainCheMyd1.txt.gz 2019-01-20 11:03 98M chainCheMyd1Link.sql 2019-01-20 11:03 1.5K chainCheMyd1Link.txt.gz 2019-01-20 11:04 555M chainChlUnd1.sql 2019-01-20 11:06 1.7K chainChlUnd1.txt.gz 2019-01-20 11:06 392M chainChlUnd1Link.sql 2019-01-20 11:08 1.5K chainChlUnd1Link.txt.gz 2019-01-20 11:10 2.0G chainChrPic2.sql 2019-01-20 11:17 1.7K chainChrPic2.txt.gz 2019-01-20 11:17 105M chainChrPic2Link.sql 2019-01-20 11:17 1.5K chainChrPic2Link.txt.gz 2019-01-20 11:18 586M chainColLiv1.sql 2019-01-20 11:20 1.7K chainColLiv1.txt.gz 2019-01-20 11:20 412M chainColLiv1Link.sql 2019-01-20 11:22 1.5K chainColLiv1Link.txt.gz 2019-01-20 11:24 2.3G chainColStr1.sql 2019-01-20 11:33 1.7K chainColStr1.txt.gz 2019-01-20 11:33 426M chainColStr1Link.sql 2019-01-20 11:34 1.5K chainColStr1Link.txt.gz 2019-01-20 11:37 2.2G chainCorBra1.sql 2019-01-20 11:45 1.7K chainCorBra1.txt.gz 2019-01-20 11:45 465M chainCorBra1Link.sql 2019-01-20 11:46 1.5K chainCorBra1Link.txt.gz 2019-01-20 11:50 2.6G chainCorCor1.sql 2019-01-20 12:00 1.7K chainCorCor1.txt.gz 2019-01-20 12:01 435M chainCorCor1Link.sql 2019-01-20 12:02 1.5K chainCorCor1Link.txt.gz 2019-01-20 12:05 2.5G chainCotJap2.sql 2019-01-20 12:14 1.7K chainCotJap2.txt.gz 2019-01-20 12:14 702M chainCotJap2Link.sql 2019-01-20 12:17 1.5K chainCotJap2Link.txt.gz 2019-01-20 12:21 3.5G chainCucCan1.sql 2019-01-20 12:34 1.7K chainCucCan1.txt.gz 2019-01-20 12:34 482M chainCucCan1Link.sql 2019-01-20 12:35 1.5K chainCucCan1Link.txt.gz 2019-01-20 12:39 2.6G chainDanRer11.sql 2019-01-20 12:48 1.7K chainDanRer11.txt.gz 2019-01-20 12:48 25M chainDanRer11Link.sql 2019-01-20 12:48 1.6K chainDanRer11Link.txt.gz 2019-01-20 12:48 91M chainEgrGar1.sql 2019-01-20 12:49 1.7K chainEgrGar1.txt.gz 2019-01-20 12:49 342M chainEgrGar1Link.sql 2019-01-20 12:50 1.5K chainEgrGar1Link.txt.gz 2019-01-20 12:52 1.9G chainEurHel1.sql 2019-01-20 12:59 1.7K chainEurHel1.txt.gz 2019-01-20 12:59 400M chainEurHel1Link.sql 2019-01-20 13:01 1.5K chainEurHel1Link.txt.gz 2019-01-20 13:03 2.0G chainFalChe1.sql 2019-01-20 13:10 1.7K chainFalChe1.txt.gz 2019-01-20 13:10 441M chainFalChe1Link.sql 2019-01-20 13:11 1.5K chainFalChe1Link.txt.gz 2019-01-20 13:15 2.6G chainFalPer1.sql 2019-01-20 13:24 1.7K chainFalPer1.txt.gz 2019-01-20 13:24 441M chainFalPer1Link.sql 2019-01-20 13:26 1.5K chainFalPer1Link.txt.gz 2019-01-20 13:29 2.6G chainFicAlb2.sql 2019-01-20 13:38 1.7K chainFicAlb2.txt.gz 2019-01-20 13:38 432M chainFicAlb2Link.sql 2019-01-20 13:40 1.5K chainFicAlb2Link.txt.gz 2019-01-20 13:43 2.4G chainFr3.sql 2019-01-20 13:51 1.7K chainFr3.txt.gz 2019-01-20 13:51 5.2M chainFr3Link.sql 2019-01-20 13:51 1.5K chainFr3Link.txt.gz 2019-01-20 13:51 31M chainFulGla1.sql 2019-01-20 13:51 1.7K chainFulGla1.txt.gz 2019-01-20 13:52 345M chainFulGla1Link.sql 2019-01-20 13:53 1.5K chainFulGla1Link.txt.gz 2019-01-20 13:55 1.7G chainGasAcu1.sql 2019-01-20 14:01 1.7K chainGasAcu1.txt.gz 2019-01-20 14:01 7.5M chainGasAcu1Link.sql 2019-01-20 14:01 1.5K chainGasAcu1Link.txt.gz 2019-01-20 14:01 41M chainGavSte1.sql 2019-01-20 14:01 1.7K chainGavSte1.txt.gz 2019-01-20 14:01 358M chainGavSte1Link.sql 2019-01-20 14:02 1.5K chainGavSte1Link.txt.gz 2019-01-20 14:05 1.8G chainGeoFor1.sql 2019-01-20 14:11 1.7K chainGeoFor1.txt.gz 2019-01-20 14:11 481M chainGeoFor1Link.sql 2019-01-20 14:13 1.5K chainGeoFor1Link.txt.gz 2019-01-20 14:16 2.7G chainHalAlb1.sql 2019-01-20 14:25 1.7K chainHalAlb1.txt.gz 2019-01-20 14:26 371M chainHalAlb1Link.sql 2019-01-20 14:27 1.5K chainHalAlb1Link.txt.gz 2019-01-20 14:29 1.9G chainHalLeu1.sql 2019-01-20 14:36 1.7K chainHalLeu1.txt.gz 2019-01-20 14:36 336M chainHalLeu1Link.sql 2019-01-20 14:37 1.5K chainHalLeu1Link.txt.gz 2019-01-20 14:39 1.9G chainHg38.sql 2018-11-14 11:33 1.7K chainHg38.txt.gz 2018-11-14 11:33 19M chainHg38Link.sql 2018-11-14 11:33 1.5K chainHg38Link.txt.gz 2018-11-14 11:33 134M chainLepDis1.sql 2019-01-20 14:46 1.7K chainLepDis1.txt.gz 2019-01-20 14:46 398M chainLepDis1Link.sql 2019-01-20 14:48 1.5K chainLepDis1Link.txt.gz 2019-01-20 14:50 2.1G chainLetCam1.sql 2019-01-20 14:58 1.7K chainLetCam1.txt.gz 2019-01-20 14:58 8.7M chainLetCam1Link.sql 2019-01-20 14:58 1.5K chainLetCam1Link.txt.gz 2019-01-20 14:58 38M chainMayZeb1.sql 2019-01-20 14:58 1.7K chainMayZeb1.txt.gz 2019-01-20 14:58 5.5M chainMayZeb1Link.sql 2019-01-20 14:58 1.5K chainMayZeb1Link.txt.gz 2019-01-20 14:58 32M chainMelGal5.sql 2019-01-20 14:58 1.7K chainMelGal5.txt.gz 2019-01-20 14:59 971M chainMelGal5Link.sql 2019-01-20 15:02 1.5K chainMelGal5Link.txt.gz 2019-01-20 15:08 4.8G chainMelUnd1.sql 2019-01-20 15:26 1.7K chainMelUnd1.txt.gz 2019-01-20 15:26 370M chainMelUnd1Link.sql 2019-01-20 15:27 1.5K chainMelUnd1Link.txt.gz 2019-01-20 15:30 2.0G chainMerNub1.sql 2019-01-20 15:37 1.7K chainMerNub1.txt.gz 2019-01-20 15:37 490M chainMerNub1Link.sql 2019-01-20 15:39 1.5K chainMerNub1Link.txt.gz 2019-01-20 15:42 2.4G chainMesUni1.sql 2019-01-20 15:50 1.7K chainMesUni1.txt.gz 2019-01-20 15:50 429M chainMesUni1Link.sql 2019-01-20 15:52 1.5K chainMesUni1Link.txt.gz 2019-01-20 15:55 2.1G chainMm10.sql 2018-11-14 11:33 1.7K chainMm10.txt.gz 2018-11-14 11:33 7.5M chainMm10Link.sql 2018-11-14 11:33 1.5K chainMm10Link.txt.gz 2018-11-14 11:34 63M chainMm39.sql 2020-11-25 01:24 1.7K chainMm39.txt.gz 2020-11-25 01:24 4.0M chainMm39Link.sql 2020-11-25 01:25 1.6K chainMm39Link.txt.gz 2020-11-25 01:25 29M chainNanPar1.sql 2019-01-20 16:02 1.7K chainNanPar1.txt.gz 2019-01-20 16:02 17M chainNanPar1Link.sql 2019-01-20 16:02 1.5K chainNanPar1Link.txt.gz 2019-01-20 16:02 74M chainNipNip1.sql 2019-01-20 16:02 1.7K chainNipNip1.txt.gz 2019-01-20 16:02 339M chainNipNip1Link.sql 2019-01-20 16:03 1.5K chainNipNip1Link.txt.gz 2019-01-20 16:06 1.8G chainOpiHoa1.sql 2019-01-20 16:12 1.7K chainOpiHoa1.txt.gz 2019-01-20 16:12 374M chainOpiHoa1Link.sql 2019-01-20 16:13 1.5K chainOpiHoa1Link.txt.gz 2019-01-20 16:16 2.0G chainOreNil3.sql 2019-01-20 16:23 1.7K chainOreNil3.txt.gz 2019-01-20 16:23 7.4M chainOreNil3Link.sql 2019-01-20 16:23 1.5K chainOreNil3Link.txt.gz 2019-01-20 16:23 44M chainOryLat2.sql 2019-01-20 16:23 1.7K chainOryLat2.txt.gz 2019-01-20 16:23 6.9M chainOryLat2Link.sql 2019-01-20 16:23 1.5K chainOryLat2Link.txt.gz 2019-01-20 16:23 35M chainPelCri1.sql 2019-01-20 16:23 1.7K chainPelCri1.txt.gz 2019-01-20 16:24 341M chainPelCri1Link.sql 2019-01-20 16:25 1.5K chainPelCri1Link.txt.gz 2019-01-20 16:27 1.8G chainPelSin1.sql 2019-01-20 16:33 1.7K chainPelSin1.txt.gz 2019-01-20 16:33 102M chainPelSin1Link.sql 2019-01-20 16:34 1.5K chainPelSin1Link.txt.gz 2019-01-20 16:34 556M chainPetMar3.sql 2019-01-20 16:36 1.7K chainPetMar3.txt.gz 2019-01-20 16:36 11M chainPetMar3Link.sql 2019-01-20 16:36 1.5K chainPetMar3Link.txt.gz 2019-01-20 16:36 54M chainPhaCar1.sql 2019-01-20 16:36 1.7K chainPhaCar1.txt.gz 2019-01-20 16:37 399M chainPhaCar1Link.sql 2019-01-20 16:38 1.5K chainPhaCar1Link.txt.gz 2019-01-20 16:41 2.0G chainPhaLep1.sql 2019-01-20 16:49 1.7K chainPhaLep1.txt.gz 2019-01-20 16:49 367M chainPhaLep1Link.sql 2019-01-20 16:50 1.5K chainPhaLep1Link.txt.gz 2019-01-20 16:53 1.9G chainPhoRub1.sql 2019-01-20 16:59 1.7K chainPhoRub1.txt.gz 2019-01-20 17:00 315M chainPhoRub1Link.sql 2019-01-20 17:01 1.5K chainPhoRub1Link.txt.gz 2019-01-20 17:03 1.6G chainPicPub1.sql 2019-01-20 17:08 1.7K chainPicPub1.txt.gz 2019-01-20 17:08 394M chainPicPub1Link.sql 2019-01-20 17:09 1.5K chainPicPub1Link.txt.gz 2019-01-20 17:12 2.1G chainPseHum1.sql 2019-01-20 17:19 1.7K chainPseHum1.txt.gz 2019-01-20 17:20 442M chainPseHum1Link.sql 2019-01-20 17:21 1.5K chainPseHum1Link.txt.gz 2019-01-20 17:24 2.6G chainPteGut1.sql 2019-01-20 17:34 1.7K chainPteGut1.txt.gz 2019-01-20 17:34 371M chainPteGut1Link.sql 2019-01-20 17:35 1.5K chainPteGut1Link.txt.gz 2019-01-20 17:38 1.8G chainPygAde1.sql 2019-01-20 17:44 1.7K chainPygAde1.txt.gz 2019-01-20 17:44 310M chainPygAde1Link.sql 2019-01-20 17:45 1.5K chainPygAde1Link.txt.gz 2019-01-20 17:47 1.7G chainPytBiv1.sql 2019-01-20 17:53 1.7K chainPytBiv1.txt.gz 2019-01-20 17:53 35M chainPytBiv1Link.sql 2019-01-20 17:53 1.5K chainPytBiv1Link.txt.gz 2019-01-20 17:54 206M chainSerCan1.sql 2019-01-20 17:54 1.7K chainSerCan1.txt.gz 2019-01-20 17:55 501M chainSerCan1Link.sql 2019-01-20 17:56 1.5K chainSerCan1Link.txt.gz 2019-01-20 18:00 2.8G chainStrCam1.sql 2019-01-20 18:10 1.7K chainStrCam1.txt.gz 2019-01-20 18:10 265M chainStrCam1Link.sql 2019-01-20 18:11 1.5K chainStrCam1Link.txt.gz 2019-01-20 18:13 1.6G chainTaeGut2.sql 2019-01-20 18:19 1.7K chainTaeGut2.txt.gz 2019-01-20 18:19 71M chainTaeGut2Link.sql 2019-01-20 18:19 1.5K chainTaeGut2Link.txt.gz 2019-01-20 18:20 486M chainTauEry1.sql 2019-01-20 18:21 1.7K chainTauEry1.txt.gz 2019-01-20 18:22 383M chainTauEry1Link.sql 2019-01-20 18:23 1.5K chainTauEry1Link.txt.gz 2019-01-20 18:26 1.9G chainTetNig2.sql 2019-01-20 18:32 1.7K chainTetNig2.txt.gz 2019-01-20 18:32 4.8M chainTetNig2Link.sql 2019-01-20 18:32 1.5K chainTetNig2Link.txt.gz 2019-01-20 18:32 34M chainThaSir1.sql 2019-01-20 18:32 1.7K chainThaSir1.txt.gz 2019-01-20 18:32 16M chainThaSir1Link.sql 2019-01-20 18:32 1.5K chainThaSir1Link.txt.gz 2019-01-20 18:33 86M chainTinGut2.sql 2019-01-20 18:33 1.7K chainTinGut2.txt.gz 2019-01-20 18:33 217M chainTinGut2Link.sql 2019-01-20 18:34 1.5K chainTinGut2Link.txt.gz 2019-01-20 18:35 1.2G chainTytAlb1.sql 2019-01-20 18:39 1.7K chainTytAlb1.txt.gz 2019-01-20 18:40 494M chainTytAlb1Link.sql 2019-01-20 18:41 1.5K chainTytAlb1Link.txt.gz 2019-01-20 18:45 2.5G chainXenLae2.sql 2019-01-20 18:53 1.7K chainXenLae2.txt.gz 2019-01-20 18:53 12M chainXenLae2Link.sql 2019-01-20 18:53 1.5K 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