This directory contains reciprocal-best netted chains for galGal6-apaVit1.

 - galGal6.apaVit1.rbest.net.gz: galGal6-referenced recip.best net to apaVit1.
 - galGal6.apaVit1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from galGal6 to apaVit1 through the recip.best net.

 - apaVit1.galGal6.rbest.net.gz: apaVit1-referenced recip.best net.
 - apaVit1.galGal6.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/galGal6.apaVit1.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                           Last modified      Size  Description
      Parent Directory                                    -   
      apaVit1.galGal6.rbest.chain.gz 2018-10-17 22:01   43M  
      apaVit1.galGal6.rbest.net.gz   2018-10-17 22:01   78M  
      axtRBestNet/                   2018-10-18 04:31    -   
      galGal6.apaVit1.rbest.chain.gz 2018-10-17 22:02   43M  
      galGal6.apaVit1.rbest.net.gz   2018-10-17 22:03   66M  
      md5sum.txt                     2018-10-17 22:03  256