This directory contains the downloadable files associated with this ENCODE
composite track. Data files are RESTRICTED FROM USE in publication until the
restriction date noted in files.txt and in the recommended 'Downloadable Files' 
user interface listed below. The full data policy is available at
http://genome.ucsc.edu/ENCODE/terms.html.

For a filterable list of these files along with additional information such as
release status, restriction dates, track description, methods, and metadata,
please use the 'Downloadable Files' user interface at: 


     http://genome.ucsc.edu/cgi-bin/hgFileUi?db=hg19&g=wgEncodeRikenCage


In addition to data files, this directory may also contain some or all of the
following:

    * files.txt - a file listing each data file and its metadata.

    * supplemental - a directory containing any additional files provided by 
      the submitting laboratory.

    * obsolete files - WARNING - Revoked and replaced data files may be present 
      in this directory. Please make every effort to determine that you are 
      using the latest version of the data. To do so access the recommended 
      'Downloadable Files' user interface via the URL provided above or check 
      files.txt.  If the data file is not listed in files.txt or has a tag of 
      objStatus=revoked or replaced, then the file is obsolete.

    * releaseN directories - WARNING - These are only present on the 
      genome-preview site. Please note that data files on genome-preview have 
      not been verified or released to the public. They are subject to change 
      without notice and should be used with caution.
      Name                                                                Last modified      Size  Description
Parent Directory - files.txt 2014-04-01 17:28 514K md5sum.txt 2014-04-01 17:28 77K supplemental/ 2012-07-24 14:57 - wgEncodeRikenCageA549CellPapAlnRep1.bam 2011-01-14 12:12 416M wgEncodeRikenCageA549CellPapAlnRep1.bam.bai 2011-01-20 05:44 4.8M wgEncodeRikenCageA549CellPapAlnRep2.bam 2011-01-14 12:16 295M wgEncodeRikenCageA549CellPapAlnRep2.bam.bai 2011-01-20 06:36 4.6M wgEncodeRikenCageA549CellPapMinusSignalRep1.bigWig 2011-01-17 07:35 64M wgEncodeRikenCageA549CellPapMinusSignalRep2.bigWig 2011-01-17 07:41 52M wgEncodeRikenCageA549CellPapPlusSignalRep1.bigWig 2011-01-17 07:34 67M wgEncodeRikenCageA549CellPapPlusSignalRep2.bigWig 2011-01-17 07:40 54M wgEncodeRikenCageA549CellPapRawDataRep1.fastq.gz 2011-01-20 05:47 521M wgEncodeRikenCageA549CellPapRawDataRep2.fastq.gz 2011-01-20 06:40 367M wgEncodeRikenCageA549CellPapTssGencV7.gtf.gz 2011-07-12 08:11 2.9M wgEncodeRikenCageA549CellPapTssHmm.bedRnaElements.gz 2012-02-10 11:38 1.7M wgEncodeRikenCageA549CytosolPapAlnRep3.bam 2012-03-28 05:44 1.5G wgEncodeRikenCageA549CytosolPapAlnRep3.bam.bai 2012-03-30 05:50 4.4M wgEncodeRikenCageA549CytosolPapAlnRep4.bam 2012-03-28 05:56 2.0G wgEncodeRikenCageA549CytosolPapAlnRep4.bam.bai 2012-03-30 07:07 4.4M wgEncodeRikenCageA549CytosolPapMinusRawRep3.bigWig 2012-03-30 02:50 25M wgEncodeRikenCageA549CytosolPapMinusRawRep4.bigWig 2012-03-30 02:52 26M wgEncodeRikenCageA549CytosolPapPlusRawRep3.bigWig 2012-03-30 02:47 25M wgEncodeRikenCageA549CytosolPapPlusRawRep4.bigWig 2012-03-30 02:48 25M wgEncodeRikenCageA549CytosolPapRawDataRep3.fastq.gz 2012-02-24 01:51 2.4G wgEncodeRikenCageA549CytosolPapRawDataRep4.fastq.gz 2012-02-23 21:45 3.2G wgEncodeRikenCageA549CytosolPapTssHmm.bedRnaElements.gz 2012-03-30 07:52 3.8M wgEncodeRikenCageA549NucleusPapAlnRep3.bam 2012-03-28 06:15 1.2G wgEncodeRikenCageA549NucleusPapAlnRep3.bam.bai 2012-03-30 06:26 5.3M wgEncodeRikenCageA549NucleusPapAlnRep4.bam 2012-03-28 05:59 2.1G wgEncodeRikenCageA549NucleusPapAlnRep4.bam.bai 2012-03-30 07:13 5.6M wgEncodeRikenCageA549NucleusPapMinusRawRep3.bigWig 2012-03-30 02:50 38M wgEncodeRikenCageA549NucleusPapMinusRawRep4.bigWig 2012-03-30 02:53 69M wgEncodeRikenCageA549NucleusPapPlusRawRep3.bigWig 2012-03-30 02:47 35M wgEncodeRikenCageA549NucleusPapPlusRawRep4.bigWig 2012-03-30 02:49 61M wgEncodeRikenCageA549NucleusPapRawDataRep3.fastq.gz 2012-03-14 18:21 2.8G wgEncodeRikenCageA549NucleusPapRawDataRep4.fastq.gz 2012-02-23 20:09 3.0G wgEncodeRikenCageA549NucleusPapTssHmm.bedRnaElements.gz 2012-03-30 07:52 5.1M wgEncodeRikenCageAg04450CellPapAlnRep1.bam 2011-01-14 11:51 529M wgEncodeRikenCageAg04450CellPapAlnRep1.bam.bai 2011-01-20 05:17 4.8M wgEncodeRikenCageAg04450CellPapAlnRep2.bam 2011-01-14 11:57 456M wgEncodeRikenCageAg04450CellPapAlnRep2.bam.bai 2011-01-20 06:40 4.8M wgEncodeRikenCageAg04450CellPapMinusSignalRep1.bigWig 2011-01-17 07:04 67M wgEncodeRikenCageAg04450CellPapMinusSignalRep2.bigWig 2011-01-17 07:11 62M wgEncodeRikenCageAg04450CellPapPlusSignalRep1.bigWig 2011-01-17 07:03 69M wgEncodeRikenCageAg04450CellPapPlusSignalRep2.bigWig 2011-01-17 07:10 64M wgEncodeRikenCageAg04450CellPapRawDataRep1.fastq.gz 2011-01-20 05:21 668M wgEncodeRikenCageAg04450CellPapRawDataRep2.fastq.gz 2011-01-20 06:43 562M wgEncodeRikenCageAg04450CellPapTssGencV7.gtf.gz 2011-07-12 08:12 3.0M wgEncodeRikenCageAg04450CellPapTssHmm.bedRnaElements.gz 2012-02-10 11:38 2.0M wgEncodeRikenCageBjCellPapAlnRep1.bam 2011-01-14 12:22 417M wgEncodeRikenCageBjCellPapAlnRep1.bam.bai 2011-01-20 06:54 4.8M wgEncodeRikenCageBjCellPapAlnRep2.bam 2011-01-14 12:28 421M wgEncodeRikenCageBjCellPapAlnRep2.bam.bai 2011-01-20 06:54 4.9M wgEncodeRikenCageBjCellPapMinusSignalRep1.bigWig 2011-01-17 07:48 59M wgEncodeRikenCageBjCellPapMinusSignalRep2.bigWig 2011-01-17 07:56 63M wgEncodeRikenCageBjCellPapPlusSignalRep1.bigWig 2011-01-17 07:47 61M wgEncodeRikenCageBjCellPapPlusSignalRep2.bigWig 2011-01-17 07:55 65M wgEncodeRikenCageBjCellPapRawDataRep1.fastq.gz 2011-01-20 06:58 515M wgEncodeRikenCageBjCellPapRawDataRep2.fastq.gz 2011-01-20 06:57 499M wgEncodeRikenCageBjCellPapTssGencV7.gtf.gz 2011-07-12 08:05 3.0M wgEncodeRikenCageBjCellPapTssHmm.bedRnaElements.gz 2012-02-10 11:38 1.7M wgEncodeRikenCageCd20CellPapAlnRep1.bam 2012-03-28 03:28 1.3G wgEncodeRikenCageCd20CellPapAlnRep1.bam.bai 2012-03-30 07:00 5.4M wgEncodeRikenCageCd20CellPapAlnRep2.bam 2012-03-28 03:37 1.3G wgEncodeRikenCageCd20CellPapAlnRep2.bam.bai 2012-03-30 07:55 5.3M wgEncodeRikenCageCd20CellPapMinusRawRep1.bigWig 2012-03-30 02:50 24M wgEncodeRikenCageCd20CellPapMinusRawRep2.bigWig 2012-03-30 02:49 24M wgEncodeRikenCageCd20CellPapPlusRawRep1.bigWig 2012-03-30 02:47 23M wgEncodeRikenCageCd20CellPapPlusRawRep2.bigWig 2012-03-30 02:47 22M wgEncodeRikenCageCd20CellPapRawDataRep1.fastq.gz 2012-02-24 00:52 1.9G wgEncodeRikenCageCd20CellPapRawDataRep2.fastq.gz 2012-02-24 00:57 2.0G wgEncodeRikenCageCd20CellPapTssHmm.bedRnaElements.gz 2012-03-30 07:59 2.4M wgEncodeRikenCageCd34mobilizedCellPapAlnRep1.bam 2012-03-28 05:52 1.9G wgEncodeRikenCageCd34mobilizedCellPapAlnRep1.bam.bai 2012-03-30 06:52 5.6M wgEncodeRikenCageCd34mobilizedCellPapMinusRawRep1.bigWig 2012-03-30 02:51 34M wgEncodeRikenCageCd34mobilizedCellPapPlusRawRep1.bigWig 2012-03-30 02:48 32M wgEncodeRikenCageCd34mobilizedCellPapRawDataRep1.fastq.gz 2012-02-28 20:21 2.9G wgEncodeRikenCageCd34mobilizedCellPapTssHmm.bedRnaElements.gz 2012-04-24 18:04 1.9M wgEncodeRikenCageGm12878CellPapAlnRep1.bam 2011-03-24 00:31 598M wgEncodeRikenCageGm12878CellPapAlnRep1.bam.bai 2011-04-29 09:25 5.1M wgEncodeRikenCageGm12878CellPapAlnRep2.bam 2011-03-24 00:31 651M wgEncodeRikenCageGm12878CellPapAlnRep2.bam.bai 2011-04-29 09:21 5.1M wgEncodeRikenCageGm12878CellPapMinusSignalRep1.bigWig 2011-03-29 06:55 13M wgEncodeRikenCageGm12878CellPapMinusSignalRep2.bigWig 2011-03-29 06:59 16M wgEncodeRikenCageGm12878CellPapPlusSignalRep1.bigWig 2011-03-29 06:33 14M wgEncodeRikenCageGm12878CellPapPlusSignalRep2.bigWig 2011-03-29 06:37 15M wgEncodeRikenCageGm12878CellPapRawDataRep1.fastq.tgz 2012-07-20 16:10 731M wgEncodeRikenCageGm12878CellPapRawDataRep2.fastq.tgz 2012-07-20 16:00 792M wgEncodeRikenCageGm12878CellPapTssGencV7.gtf.gz 2011-07-12 08:16 3.0M wgEncodeRikenCageGm12878CellPapTssHmm.bedRnaElements.gz 2012-02-10 11:38 5.7M wgEncodeRikenCageGm12878CytosolLongnonpolyaAln.bam 2010-07-24 12:41 570M wgEncodeRikenCageGm12878CytosolLongnonpolyaAln.bam.bai 2010-07-24 15:55 5.4M wgEncodeRikenCageGm12878CytosolLongnonpolyaMinusClusters.bigWig 2010-08-25 13:48 12M wgEncodeRikenCageGm12878CytosolLongnonpolyaPlusClusters.bigWig 2010-08-25 13:48 12M wgEncodeRikenCageGm12878CytosolLongnonpolyaRawData.fastq.gz 2010-09-23 07:33 562M wgEncodeRikenCageGm12878CytosolPamAln.bam 2010-07-24 12:41 570M wgEncodeRikenCageGm12878CytosolPamAln.bam.bai 2010-07-24 15:55 5.4M wgEncodeRikenCageGm12878CytosolPamMinusSignal.bigWig 2010-08-25 13:48 12M wgEncodeRikenCageGm12878CytosolPamPlusSignal.bigWig 2010-08-25 13:48 12M wgEncodeRikenCageGm12878CytosolPamRawData.fastq.gz 2010-09-23 07:33 562M wgEncodeRikenCageGm12878CytosolPamTssGencV7.gtf.gz 2011-07-12 08:14 2.6M wgEncodeRikenCageGm12878CytosolPamTssHmm.bedRnaElements.gz 2012-02-10 10:32 3.1M wgEncodeRikenCageGm12878CytosolPamTssHmmV2.bedRnaElements.gz 2012-02-10 11:21 3.1M wgEncodeRikenCageGm12878CytosolPapAlnRep1.bam 2011-03-24 00:32 593M wgEncodeRikenCageGm12878CytosolPapAlnRep1.bam.bai 2011-04-29 09:24 4.8M wgEncodeRikenCageGm12878CytosolPapAlnRep2.bam 2011-03-24 00:32 589M wgEncodeRikenCageGm12878CytosolPapAlnRep2.bam.bai 2011-04-28 12:51 4.5M wgEncodeRikenCageGm12878CytosolPapMinusSignalRep1.bigWig 2011-03-29 07:02 12M wgEncodeRikenCageGm12878CytosolPapMinusSignalRep2.bigWig 2011-03-29 07:06 11M wgEncodeRikenCageGm12878CytosolPapPlusSignalRep1.bigWig 2011-03-29 06:40 13M wgEncodeRikenCageGm12878CytosolPapPlusSignalRep2.bigWig 2011-03-29 06:44 12M wgEncodeRikenCageGm12878CytosolPapRawDataRep1.fastq.tgz 2012-07-20 17:21 760M wgEncodeRikenCageGm12878CytosolPapRawDataRep2.fastq.tgz 2012-07-20 15:36 755M wgEncodeRikenCageGm12878CytosolPapTssGencV7.gtf.gz 2011-07-12 08:08 3.0M wgEncodeRikenCageGm12878CytosolPapTssHmm.bedRnaElements.gz 2012-02-10 11:38 4.2M wgEncodeRikenCageGm12878NucleolusTotalAln.bam 2010-06-14 02:25 1.0G wgEncodeRikenCageGm12878NucleolusTotalAln.bam.bai 2010-08-25 10:56 5.5M wgEncodeRikenCageGm12878NucleolusTotalMinusClusters.bigWig 2010-08-25 13:48 18M wgEncodeRikenCageGm12878NucleolusTotalMinusSignal.bigWig 2010-08-25 13:48 18M wgEncodeRikenCageGm12878NucleolusTotalPlusClusters.bigWig 2010-08-25 13:48 18M wgEncodeRikenCageGm12878NucleolusTotalPlusSignal.bigWig 2010-08-25 13:48 18M wgEncodeRikenCageGm12878NucleolusTotalRawData.fastq.gz 2010-09-23 07:28 1.2G wgEncodeRikenCageGm12878NucleolusTotalTssGencV7.gtf.gz 2011-07-12 08:07 2.7M wgEncodeRikenCageGm12878NucleolusTotalTssHmm.bedRnaElements.gz 2012-02-10 10:32 7.2M wgEncodeRikenCageGm12878NucleolusTotalTssHmmV2.bedRnaElements.gz 2012-02-10 11:20 7.2M wgEncodeRikenCageGm12878NucleusLongnonpolyaAlnRep1.bam 2010-08-17 08:31 49M wgEncodeRikenCageGm12878NucleusLongnonpolyaAlnRep1.bam.bai 2010-09-21 02:52 3.3M wgEncodeRikenCageGm12878NucleusLongnonpolyaMinusClustersRep1.bigWig 2010-09-06 05:00 1.0M wgEncodeRikenCageGm12878NucleusLongnonpolyaPlusClustersRep1.bigWig 2010-09-06 05:00 1.0M wgEncodeRikenCageGm12878NucleusLongnonpolyaRawDataRep1.fastq.gz 2010-08-17 14:45 76M wgEncodeRikenCageGm12878NucleusPamAlnRep1.bam 2010-08-17 08:31 49M wgEncodeRikenCageGm12878NucleusPamAlnRep1.bam.bai 2010-09-21 02:52 3.3M wgEncodeRikenCageGm12878NucleusPamMinusSignalRep1.bigWig 2010-09-06 05:00 1.0M wgEncodeRikenCageGm12878NucleusPamPlusSignalRep1.bigWig 2010-09-06 05:00 1.0M wgEncodeRikenCageGm12878NucleusPamRawDataRep1.fastq.gz 2010-08-17 14:45 76M wgEncodeRikenCageGm12878NucleusPamTssGencV7.gtf.gz 2011-07-12 08:08 2.4M wgEncodeRikenCageGm12878NucleusPamTssHmm.bedRnaElements.gz 2012-02-10 10:32 725K wgEncodeRikenCageGm12878NucleusPamTssHmmV2.bedRnaElements.gz 2012-02-10 11:21 727K wgEncodeRikenCageGm12878NucleusPapAlnRep1.bam 2011-03-24 00:32 603M wgEncodeRikenCageGm12878NucleusPapAlnRep1.bam.bai 2011-04-29 09:23 5.2M wgEncodeRikenCageGm12878NucleusPapAlnRep2.bam 2011-03-24 00:32 642M wgEncodeRikenCageGm12878NucleusPapAlnRep2.bam.bai 2011-04-29 09:22 5.3M wgEncodeRikenCageGm12878NucleusPapMinusSignalRep1.bigWig 2011-03-29 07:09 16M wgEncodeRikenCageGm12878NucleusPapMinusSignalRep2.bigWig 2011-03-29 07:13 18M wgEncodeRikenCageGm12878NucleusPapPlusSignalRep1.bigWig 2011-03-29 06:47 18M wgEncodeRikenCageGm12878NucleusPapPlusSignalRep2.bigWig 2011-03-29 06:51 20M wgEncodeRikenCageGm12878NucleusPapRawDataRep1.fastq.tgz 2012-07-20 15:48 749M wgEncodeRikenCageGm12878NucleusPapRawDataRep2.fastq.tgz 2012-07-20 16:22 760M wgEncodeRikenCageGm12878NucleusPapTssGencV7.gtf.gz 2011-07-12 08:17 3.1M wgEncodeRikenCageGm12878NucleusPapTssHmm.bedRnaElements.gz 2012-02-10 11:38 6.8M wgEncodeRikenCageH1hescCellLongnonpolyaAln.bam 2010-06-14 02:01 728M wgEncodeRikenCageH1hescCellLongnonpolyaAln.bam.bai 2010-09-22 10:38 5.2M wgEncodeRikenCageH1hescCellLongnonpolyaMinusClusters.bigWig 2010-09-29 10:04 6.5M wgEncodeRikenCageH1hescCellLongnonpolyaPlusClusters.bigWig 2010-09-29 10:04 9.1M wgEncodeRikenCageH1hescCellLongnonpolyaRawData.fastq.gz 2010-09-23 07:29 933M wgEncodeRikenCageH1hescCellPamAln.bam 2010-06-14 02:01 728M wgEncodeRikenCageH1hescCellPamAln.bam.bai 2010-09-22 10:38 5.2M wgEncodeRikenCageH1hescCellPamMinusSignal.bigWig 2010-09-29 10:04 6.5M wgEncodeRikenCageH1hescCellPamPlusSignal.bigWig 2010-09-29 10:04 9.1M wgEncodeRikenCageH1hescCellPamRawData.fastq.gz 2010-09-23 07:29 933M wgEncodeRikenCageH1hescCellPamTssGencV7.gtf.gz 2011-07-12 08:15 2.7M wgEncodeRikenCageH1hescCellPamTssHmm.bedRnaElements.gz 2012-02-10 10:32 4.3M wgEncodeRikenCageH1hescCellPamTssHmmV2.bedRnaElements.gz 2012-02-10 11:21 4.4M wgEncodeRikenCageH1hescCellPapAlnRep1.bam 2010-08-17 08:32 665M wgEncodeRikenCageH1hescCellPapAlnRep1.bam.bai 2010-09-21 05:39 5.0M wgEncodeRikenCageH1hescCellPapAlnRep2.bam 2010-08-17 08:35 639M wgEncodeRikenCageH1hescCellPapAlnRep2.bam.bai 2010-09-21 05:19 5.1M wgEncodeRikenCageH1hescCellPapMinusClustersRep1.bigWig 2010-09-06 05:00 5.8M wgEncodeRikenCageH1hescCellPapMinusClustersRep2.bigWig 2010-09-06 05:00 6.7M wgEncodeRikenCageH1hescCellPapMinusSignalRep1.bigWig 2010-09-06 05:00 5.8M wgEncodeRikenCageH1hescCellPapMinusSignalRep2.bigWig 2010-09-06 05:00 6.7M wgEncodeRikenCageH1hescCellPapPlusClustersRep1.bigWig 2010-09-06 05:00 5.9M wgEncodeRikenCageH1hescCellPapPlusClustersRep2.bigWig 2010-09-06 05:00 9.1M wgEncodeRikenCageH1hescCellPapPlusSignalRep1.bigWig 2010-09-06 05:00 5.9M wgEncodeRikenCageH1hescCellPapPlusSignalRep2.bigWig 2010-09-06 05:00 9.1M wgEncodeRikenCageH1hescCellPapRawDataRep1.fastq.gz 2010-09-21 05:41 804M wgEncodeRikenCageH1hescCellPapRawDataRep2.fastq.gz 2010-09-21 05:21 765M wgEncodeRikenCageH1hescCellPapTssGencV7.gtf.gz 2011-07-12 08:07 3.1M wgEncodeRikenCageH1hescCellPapTssHmm.bedRnaElements.gz 2012-02-10 11:38 4.8M wgEncodeRikenCageH1hescCytosolPapAlnRep2.bam 2010-08-17 08:56 628M wgEncodeRikenCageH1hescCytosolPapAlnRep2.bam.bai 2010-09-21 05:37 4.8M wgEncodeRikenCageH1hescCytosolPapMinusClustersRep2.bigWig 2010-09-06 05:01 5.1M wgEncodeRikenCageH1hescCytosolPapMinusSignalRep2.bigWig 2010-09-06 05:01 5.1M wgEncodeRikenCageH1hescCytosolPapPlusClustersRep2.bigWig 2010-09-06 05:01 5.1M wgEncodeRikenCageH1hescCytosolPapPlusSignalRep2.bigWig 2010-09-06 05:01 5.1M wgEncodeRikenCageH1hescCytosolPapRawDataRep2.fastq.gz 2010-09-21 05:39 786M wgEncodeRikenCageH1hescCytosolPapTssHmm.bedRnaElements.gz 2012-07-24 12:43 1.1M wgEncodeRikenCageH1hescNucleusPapAlnRep2.bam 2010-08-17 09:27 670M wgEncodeRikenCageH1hescNucleusPapAlnRep2.bam.bai 2010-09-21 03:50 5.4M wgEncodeRikenCageH1hescNucleusPapMinusClustersRep2.bigWig 2010-09-06 05:01 12M wgEncodeRikenCageH1hescNucleusPapMinusSignalRep2.bigWig 2010-09-06 05:01 12M wgEncodeRikenCageH1hescNucleusPapPlusClustersRep2.bigWig 2010-09-06 05:01 13M wgEncodeRikenCageH1hescNucleusPapPlusSignalRep2.bigWig 2010-09-06 05:01 13M wgEncodeRikenCageH1hescNucleusPapRawDataRep2.fastq.gz 2010-09-21 03:52 774M wgEncodeRikenCageH1hescNucleusPapTssHmm.bedRnaElements.gz 2012-07-24 14:20 1.5M wgEncodeRikenCageHaoafCellPapAlnRep1.bam 2012-03-28 05:22 737M wgEncodeRikenCageHaoafCellPapAlnRep1.bam.bai 2012-03-30 06:18 3.7M wgEncodeRikenCageHaoafCellPapAlnRep2.bam 2012-03-28 06:09 447M wgEncodeRikenCageHaoafCellPapAlnRep2.bam.bai 2012-03-30 07:09 3.2M wgEncodeRikenCageHaoafCellPapMinusRawRep1.bigWig 2012-03-30 02:48 11M wgEncodeRikenCageHaoafCellPapMinusRawRep2.bigWig 2012-03-30 02:47 7.2M wgEncodeRikenCageHaoafCellPapPlusRawRep1.bigWig 2012-03-30 02:46 10M wgEncodeRikenCageHaoafCellPapPlusRawRep2.bigWig 2012-03-30 02:46 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