The data files ("UCSC Chain Files") in this directory are property of The
Regents of the University of California, and made available free for
non-commercial use by Independent Researchers and Nonprofit Organizations. Any
other use of UCSC Chain Files requires a commercial license, for which users
should contact genomebrowser@ucsc.edu. As used herein, "Independent
Researcher" means an individual who is autonomous with respect to the
research activities for which he or she uses the UCSC Chain Files (note: such
use does not extend to any use of the UCSC Chain Files at the direction and/or
for the benefit of a for-profit organization); and "Nonprofit
Organization" means a university or other institution of higher education,
or a not-for-profit organization officially recognized or qualified under the
laws of the country in which it is organized or located, or any nonprofit
scientific or educational organization qualified under a federal, state or local
jurisdiction's nonprofit organization statute.

This directory contains the data files required as input to the
liftOver utility. This tool -- which requires a Linux platform --
allows the mass conversion of coordinates from one assembly to
another. The executable file for the utility can be downloaded from
http://hgdownload.cse.ucsc.edu/admin/exe/

The file names reflect the assembly conversion data contained within
in the format <db1>To<Db2>.over.chain.gz. For example, a file named
hg15ToHg16.over.chain.gz file contains the liftOver data needed to
convert hg15 (Human Build 33) coordinates to hg16 (Human Build 34).
If no file is available for the assembly in which you're interested,
please send a request to the genome mailing list
(genome@soe.ucsc.edu) and we will attempt to provide you with one.

To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.cse.ucsc.edu (user: anonymous),
then cd to goldenPath/hg38/liftOver.  To download multiple files,
use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
-------------------------------------------------------
Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.cse.ucsc.edu/goldenPath/hg38/liftOver/ .
For a single file, e.g. hg38ToHg19.over.chain.gz
    rsync -avzP 
        rsync://hgdownload.cse.ucsc.edu/goldenPath/hg38/liftOver/hg38ToHg19.over.chain.gz .
    (Hg19 is merely an example here, not necessarily existing.)

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/hg38/liftOver/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.cse.ucsc.edu/goldenPath/hg38/liftOver/hg38ToHg19.over.chain.gz' 
        -O hg38ToHg19.over.chain.gz

To uncompress the *.chain.gz files:
    gunzip <file>.chain.gz
The liftOver utility can read the files in their .gz format,
it is not necessary to uncompress them to use with the liftOver command.

      Name                                Last modified      Size  Description
Parent Directory - hg38ToAilMel1.over.chain.gz 2015-02-12 04:09 77M hg38ToAllMis1.over.chain.gz 2015-02-14 00:31 19M hg38ToAmaVit1.over.chain.gz 2015-02-13 23:20 11M hg38ToAnaPla1.over.chain.gz 2015-02-13 21:21 9.8M hg38ToAnoCar2.over.chain.gz 2015-02-06 14:20 8.4M hg38ToAotNan1.over.chain.gz 2017-09-25 15:51 50M hg38ToApaSpi1.over.chain.gz 2015-02-14 00:01 14M hg38ToAptMan1.over.chain.gz 2017-02-21 17:07 12M hg38ToAquChr2.over.chain.gz 2017-03-16 19:06 13M hg38ToAraMac1.over.chain.gz 2015-02-17 18:08 10M hg38ToAstMex1.over.chain.gz 2015-02-18 17:16 5.8M hg38ToBalAcu1.over.chain.gz 2018-06-11 17:53 82M hg38ToBisBis1.over.chain.gz 2017-03-17 21:14 84M hg38ToBosTau8.over.chain.gz 2014-10-16 18:24 84M hg38ToBosTau9.over.chain.gz 2018-11-08 15:58 83M hg38ToCalJac3.over.chain.gz 2014-12-13 15:52 57M hg38ToCalJac4.over.chain.gz 2020-09-03 23:02 63M hg38ToCamFer1.over.chain.gz 2015-04-24 13:40 81M hg38ToCanFam3.over.chain.gz 2015-04-10 01:22 89M hg38ToCanFam4.over.chain.gz 2020-04-03 00:23 90M hg38ToCanFam5.over.chain.gz 2020-07-30 05:35 90M hg38ToCapHir1.over.chain.gz 2015-04-28 11:44 83M hg38ToCasCan1.over.chain.gz 2018-03-20 01:38 89M hg38ToCavApe1.over.chain.gz 2018-01-08 21:39 56M hg38ToCavPor3.over.chain.gz 2015-04-28 09:18 85M hg38ToCebCap1.over.chain.gz 2017-09-28 19:11 50M hg38ToCerAty1.over.chain.gz 2017-09-27 11:04 38M hg38ToCerSim1.over.chain.gz 2015-02-23 15:38 84M hg38ToCheMyd1.over.chain.gz 2015-02-06 14:24 15M hg38ToChiLan1.over.chain.gz 2015-04-28 03:54 87M hg38ToChlSab2.over.chain.gz 2014-07-11 19:29 37M hg38ToChrAsi1.over.chain.gz 2015-02-20 05:23 68M hg38ToChrPic2.over.chain.gz 2015-02-06 14:31 16M hg38ToColAng1.over.chain.gz 2017-02-27 12:31 37M hg38ToColLiv1.over.chain.gz 2015-02-13 21:43 11M hg38ToConCri1.over.chain.gz 2015-04-29 09:18 74M hg38ToCriGri1.over.chain.gz 2015-02-20 19:28 73M hg38ToCriGriChoV1.over.chain.gz 2017-04-13 20:21 70M hg38ToCriGriChoV2.over.chain.gz 2018-01-05 17:48 72M hg38ToDanRer10.over.chain.gz 2015-02-08 14:08 9.2M hg38ToDanRer11.over.chain.gz 2017-06-13 14:42 4.4M hg38ToDasNov3.over.chain.gz 2015-04-29 13:59 85M hg38ToDipOrd2.over.chain.gz 2018-01-01 19:07 70M hg38ToEchTel2.over.chain.gz 2015-04-29 14:12 62M hg38ToEleEdw1.over.chain.gz 2015-02-19 12:11 57M hg38ToEnhLutNer1.over.chain.gz 2019-12-20 21:36 89M hg38ToEptFus1.over.chain.gz 2015-04-24 13:37 71M hg38ToEquCab2.over.chain.gz 2015-02-23 11:14 84M hg38ToEquCab3.over.chain.gz 2018-05-25 16:55 85M hg38ToEriEur2.over.chain.gz 2015-02-19 13:03 55M hg38ToEulFla1.over.chain.gz 2017-10-03 16:01 40M hg38ToEulMac1.over.chain.gz 2017-10-04 21:47 41M hg38ToFalChe1.over.chain.gz 2015-02-13 21:19 11M hg38ToFalPer1.over.chain.gz 2015-02-13 21:29 11M hg38ToFelCat8.over.chain.gz 2015-04-29 22:16 89M hg38ToFelCat9.over.chain.gz 2018-03-15 04:47 89M hg38ToFicAlb1.over.chain.gz 2018-01-09 07:52 11M hg38ToFicAlb2.over.chain.gz 2015-02-18 23:23 11M hg38ToFr3.over.chain.gz 2015-02-18 06:17 4.4M hg38ToFukDam1.over.chain.gz 2018-01-01 19:56 86M hg38ToGCF_002742125.1.over.chain.gz 2021-04-05 15:51 84M hg38ToGCF_003121395.1.over.chain.gz 2021-01-05 17:03 84M hg38ToGadMor1.over.chain.gz 2015-02-18 17:19 4.8M hg38ToGalGal4.over.chain.gz 2015-02-13 21:49 11M hg38ToGalGal5.over.chain.gz 2016-04-19 16:46 12M hg38ToGalGal6.over.chain.gz 2018-10-12 10:57 12M hg38ToGalVar1.over.chain.gz 2016-04-26 03:10 85M hg38ToGasAcu1.over.chain.gz 2015-02-18 08:29 5.2M hg38ToGeoFor1.over.chain.gz 2015-02-19 01:33 10M hg38ToGorGor3.over.chain.gz 2014-12-15 13:00 18M hg38ToGorGor4.over.chain.gz 2016-01-06 18:59 16M hg38ToGorGor5.over.chain.gz 2016-06-25 02:40 19M hg38ToGorGor6.over.chain.gz 2019-11-21 08:19 15M hg38ToHapBur1.over.chain.gz 2015-02-18 12:37 4.4M hg38ToHetGla2.over.chain.gz 2015-04-29 12:55 86M hg38ToHg19.over.chain.gz 2013-12-31 17:24 1.2M hg38ToJacJac1.over.chain.gz 2015-02-19 21:29 73M hg38ToLatCha1.over.chain.gz 2015-02-19 23:56 7.2M hg38ToLepOcu1.over.chain.gz 2015-02-19 05:23 6.1M hg38ToLepWed1.over.chain.gz 2015-04-29 11:05 87M hg38ToLoxAfr3.over.chain.gz 2015-04-29 13:44 81M hg38ToMacEug2.over.chain.gz 2015-02-19 22:55 17M hg38ToMacFas5.over.chain.gz 2014-12-14 01:05 39M hg38ToMacNem1.over.chain.gz 2017-02-27 13:00 38M hg38ToManLeu1.over.chain.gz 2017-09-25 08:44 37M hg38ToManPen1.over.chain.gz 2017-03-16 02:59 80M hg38ToMayZeb1.over.chain.gz 2015-02-07 09:24 4.4M hg38ToMelGal1.over.chain.gz 2015-02-13 23:11 10M hg38ToMelGal5.over.chain.gz 2017-01-19 16:25 11M hg38ToMelUnd1.over.chain.gz 2015-02-19 01:14 10M hg38ToMesAur1.over.chain.gz 2015-02-19 22:02 68M hg38ToMicMur1.over.chain.gz 2015-03-17 12:00 67M hg38ToMicMur2.over.chain.gz 2015-05-06 11:30 76M hg38ToMicMur3.over.chain.gz 2017-03-04 09:21 37M hg38ToMicOch1.over.chain.gz 2015-02-14 21:46 69M hg38ToMm10.over.chain.gz 2015-04-09 17:32 70M hg38ToMm39.over.chain.gz 2020-08-17 15:54 70M hg38ToMonDom5.over.chain.gz 2014-05-29 11:09 34M hg38ToMusFur1.over.chain.gz 2015-04-29 19:01 88M hg38ToMyoDav1.over.chain.gz 2015-04-28 07:01 73M hg38ToMyoLuc2.over.chain.gz 2015-04-28 04:57 70M hg38ToNasLar1.over.chain.gz 2014-12-15 17:05 45M hg38ToNeoBri1.over.chain.gz 2015-02-18 12:58 4.4M hg38ToNeoSch1.over.chain.gz 2017-09-25 20:52 87M hg38ToNomLeu3.over.chain.gz 2014-12-12 19:44 29M hg38ToOchPri3.over.chain.gz 2015-04-28 02:31 69M hg38ToOctDeg1.over.chain.gz 2015-04-24 20:40 82M hg38ToOdoRosDiv1.over.chain.gz 2015-04-29 11:12 88M hg38ToOrcOrc1.over.chain.gz 2016-06-03 22:03 82M hg38ToOreNil2.over.chain.gz 2015-02-18 13:56 4.6M hg38ToOreNil3.over.chain.gz 2017-07-31 14:04 4.8M hg38ToOrnAna1.over.chain.gz 2015-02-13 23:37 19M hg38ToOrnAna2.over.chain.gz 2017-02-21 18:13 22M hg38ToOryAfe1.over.chain.gz 2015-04-23 21:56 77M hg38ToOryCun2.over.chain.gz 2015-04-28 04:52 80M hg38ToOryLat2.over.chain.gz 2015-02-06 09:41 5.0M hg38ToOtoGar3.over.chain.gz 2015-02-23 00:51 87M hg38ToOviAri3.over.chain.gz 2015-04-27 19:49 83M hg38ToOviAri4.over.chain.gz 2018-04-26 08:56 83M hg38ToPanHod1.over.chain.gz 2015-04-28 07:08 84M hg38ToPanPan1.over.chain.gz 2014-12-11 16:48 16M hg38ToPanPan2.over.chain.gz 2016-05-24 13:33 15M hg38ToPanPan3.over.chain.gz 2020-06-15 10:51 13M hg38ToPanTro3.over.chain.gz 2018-01-03 23:41 14M hg38ToPanTro4.over.chain.gz 2014-05-27 10:06 14M hg38ToPanTro5.over.chain.gz 2016-08-04 01:08 14M hg38ToPanTro6.over.chain.gz 2018-03-24 23:05 12M hg38ToPapAnu2.over.chain.gz 2014-12-13 13:53 39M hg38ToPapAnu3.over.chain.gz 2017-06-22 13:46 42M hg38ToPapAnu4.over.chain.gz 2018-01-09 09:20 42M hg38ToPelSin1.over.chain.gz 2015-02-14 00:13 14M hg38ToPetMar2.over.chain.gz 2015-02-06 18:05 3.6M hg38ToPetMar3.over.chain.gz 2018-01-25 11:07 4.9M hg38ToPonAbe2.over.chain.gz 2014-09-02 13:55 27M hg38ToPonAbe3.over.chain.gz 2018-03-26 13:55 23M hg38ToProCoq1.over.chain.gz 2017-09-28 18:30 39M hg38ToPseHum1.over.chain.gz 2015-02-19 13:39 12M hg38ToPteAle1.over.chain.gz 2015-04-29 12:41 81M hg38ToPteVam1.over.chain.gz 2015-04-29 10:47 76M hg38ToPunNye1.over.chain.gz 2015-02-06 18:11 4.4M hg38ToRheMac2.over.chain.gz 2014-07-11 19:23 35M hg38ToRheMac3.over.chain.gz 2015-04-09 15:10 37M hg38ToRheMac8.over.chain.gz 2016-02-08 12:40 38M hg38ToRheMac10.over.chain.gz 2019-07-03 14:15 37M hg38ToRhiBie1.over.chain.gz 2017-03-23 15:20 41M hg38ToRhiRox1.over.chain.gz 2015-02-23 11:26 41M hg38ToRn4.over.chain.gz 2014-03-01 11:14 66M hg38ToRn5.over.chain.gz 2014-03-01 11:14 68M hg38ToRn6.over.chain.gz 2015-02-14 22:30 69M hg38ToSaiBol1.over.chain.gz 2014-12-13 19:23 55M hg38ToSarHar1.over.chain.gz 2015-02-14 01:13 31M hg38ToSorAra2.over.chain.gz 2015-02-20 00:38 60M hg38ToSpeTri2.over.chain.gz 2015-04-29 13:05 89M hg38ToSusScr3.over.chain.gz 2015-04-29 11:32 81M hg38ToSusScr11.over.chain.gz 2017-07-31 17:43 86M hg38ToTaeGut2.over.chain.gz 2015-02-19 21:26 15M hg38ToTakFla1.over.chain.gz 2015-02-18 10:59 4.0M hg38ToTarSyr2.over.chain.gz 2014-12-12 15:32 84M hg38ToTetNig2.over.chain.gz 2015-02-17 23:57 4.3M hg38ToThaSir1.over.chain.gz 2018-03-13 12:20 8.5M hg38ToTriMan1.over.chain.gz 2015-04-29 14:54 79M hg38ToTupBel1.over.chain.gz 2015-03-27 14:12 70M hg38ToTupChi1.over.chain.gz 2015-02-19 10:39 82M hg38ToTurTru2.over.chain.gz 2017-02-21 19:26 84M hg38ToVicPac2.over.chain.gz 2015-04-29 11:55 82M hg38ToXenLae2.over.chain.gz 2017-03-30 07:56 7.6M hg38ToXenTro7.over.chain.gz 2015-02-19 22:44 10M hg38ToXenTro9.over.chain.gz 2017-03-30 06:52 10M hg38ToXipMac1.over.chain.gz 2015-02-06 17:56 4.9M hg38ToZonAlb1.over.chain.gz 2015-02-18 17:32 11M md5sum.txt 2018-03-26 14:58 9.2K