# AGP dumped from Genomic-Collection: Assembly GRCm38.p4 129P2_OlaHsd # (Assembly accession = GCA_000000495.1, asm_id = 403) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr19_GL456079_alt 1 46440 1 O AF155142.1 1 46440 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 129S1_SvImJ # (Assembly accession = GCA_000001665.1, asm_id = 121903) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr2_GL456024v2_alt 1 158450 1 F AC068911.38 1 158450 + chr2_GL456024v2_alt 158451 204015 2 F AC068913.22 1 45565 - chr2_GL456024v2_alt 204016 306013 3 F AC079439.26 13750 115747 + chr2_GL456024v2_alt 306014 410905 4 F AC079440.38 26496 131387 + chr3_GL456007_alt 1 129775 1 F AL645806.9 1 129775 + chr3_GL456007_alt 129776 273369 2 F AL645753.11 2001 145594 + chr3_GL456006_alt 1 201500 1 F AL645807.4 1 201500 + chr3_GL456006_alt 201501 320308 2 F AL662862.16 2001 120808 + chr3_GL456008_alt 1 124933 1 O AF545858.1 1 124933 + chr5_GL456011_alt 1 180394 1 F AC113262.29 1 180394 + chr6_GL456025_alt 1 145152 1 F AC009725.12 1 145152 + chr6_GL456026v2_alt 1 111775 1 F AC018559.31 1 111775 + chr6_GL456026v2_alt 111776 241587 2 F AC007844.32 22505 152316 + chr6_GL456026v2_alt 241588 340250 3 F AC012397.33 41536 140198 + chr6_GL456026v2_alt 340251 364642 4 F AC009192.72 96139 120530 + chr6_GL456026v2_alt 364643 480710 5 F AC006447.24 24387 140454 + chr6_GL456026v2_alt 480711 542330 6 F AC006404.25 81158 142777 + chr6_GL456026v2_alt 542331 636141 7 F AC006945.17 26501 120311 + chr7_GL456014_alt 1 91251 1 F AC074230.31 1 91251 + chr12_GL456074_alt 1 84250 1 O AF481949.1 1 84250 + chr12_GL456017v2_alt 1 124254 1 O AF450245.1 1 124254 - chr12_GL456017v2_alt 124255 577181 2 O AJ851868.3 1140349 1593275 - chr12_GL456017v2_alt 577182 578520 3 N 1339 scaffold yes paired-ends chr12_GL456017v2_alt 578521 1714434 4 O AJ851868.3 3096 1139009 - chr13_JH584305_alt 1 179252 1 O AF131205.1 1 179252 + chr14_GL456019_alt 1 404892 1 O AE008683.1 1 404892 + chr14_GL456019_alt 404893 804791 2 O AE008684.1 201 400099 + chr14_GL456019_alt 804792 1204690 3 O AE008685.1 201 400099 + chr14_GL456019_alt 1204691 1666365 4 O AE008686.1 201 461875 + chr16_JH584306_alt 1 127343 1 F AC000096.17 1 127343 + chr16_JH584306_alt 127344 217015 2 F AC003063.7 38472 128143 + chr16_JH584306_alt 217016 346773 3 F AC005817.8 58951 188708 + chr16_JH584306_alt 346774 480699 4 F AC006082.22 1 133926 - chr16_JH584307_alt 1 109472 1 F AC010001.44 1 109472 + chr16_JH584307_alt 109473 218564 2 F AC005816.6 27596 136687 + chr16_JH584307_alt 218565 250595 3 F AC003062.2 57713 89743 + chr17_JH590470_alt 1 148334 1 F AY555278.1 1 148334 + chr17_JH590470_alt 148335 276465 2 F AF532116.1 64741 192871 + chr17_JH590470_alt 276466 299298 3 F AF532113.1 4130 26962 + chr17_JH590470_alt 299299 474503 4 F AF532111.1 3050 178254 + chr17_JH590470_alt 474504 597335 5 F AC005413.1 1 122832 - chr17_JH590470_alt 597336 610598 6 F AC005665.1 1 13263 - chr17_JH590470_alt 610599 756305 7 F AF532117.1 27582 173288 + chr17_JH590470_alt 756306 876041 8 F AF532115.1 41994 161729 + chr17_JH590470_alt 876042 959203 9 F AF532112.1 89038 172199 + chr17_JH590470_alt 959204 1035289 10 F AF532114.1 77784 153869 + chr17_JH590470_alt 1035290 1154078 11 F AL078630.1 35826 154614 + chr17_JH584308_alt 1 102917 1 F AL359381.8 1 102917 + chr17_JH584308_alt 102918 273566 2 F AL133159.5 101 170749 + chr17_JH584309_alt 1 162935 1 F AL359352.21 1 162935 + chrX_GL456032_alt 1 109783 1 F AC124212.2 1 109783 + chrX_GL456032_alt 109784 194271 2 F AF131866.2 25823 110310 + chrX_GL456033v2_alt 1 78689 1 O AL136328.2 1 78689 + chrX_GL456031_alt 1 247850 1 O AJ421478.1 1 247850 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 129S2_SvPas # (Assembly accession = GCA_000001675.1, asm_id = 98683) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr7_GL456013_alt 1 34498 1 O AF321235.1 1 34498 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 129S6_SvEvTac # (Assembly accession = GCA_000000395.2, asm_id = 121923) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr1_GL455993_alt 1 159700 1 F AC079222.17 1 159700 + chr1_GL455993_alt 159701 272653 2 F AC079223.11 1 112953 - chr1_GL455991_alt 1 175223 1 F AC034108.26 1 175223 + chr1_GL455991_alt 175224 281255 2 F AC024068.16 51035 157066 + chr1_GL455992v2_alt 1 120856 1 F AC006944.14 1 120856 + chr4_GL455994_alt 1 170592 1 F AC118466.8 1 170592 + chr5_GL455995_alt 1 158344 1 F AL133401.16 1 158344 + chr5_GL455995_alt 158345 262166 2 F AL354805.23 101 103922 + chr8_GL455996_alt 1 183135 1 O AY028080.1 1 183135 + chr8_GL455997_alt 1 185548 1 F AC005743.5 1 185548 - chr8_GL455997_alt 185549 251056 2 F AC006943.25 18527 84034 + chr11_GL455998_alt 1 170397 1 F AC109605.14 1 170397 + chr13_GL455999v2_alt 1 138435 1 F AC109604.9 1 138435 + chr15_GL456000_alt 1 88442 1 F AC005526.20 1 88442 + chr16_JH584310_alt 1 186272 1 F AC012526.35 1 186272 + chr16_JH584310_alt 186273 261336 2 F AC012399.40 1 75064 - chr16_JH584311_alt 1 189707 1 F AC008019.60 1 189707 + chr16_JH584312_alt 1 184044 1 F AC008020.37 1 184044 + chr16_GL456001v2_alt 1 157385 1 F AP003155.1 1 157385 + chr16_GL456001v2_alt 157386 290644 2 F AP003149.1 8553 141811 + chr16_GL456001v2_alt 290645 436920 3 F AP003151.1 13868 160143 + chr16_GL456001v2_alt 436921 467728 4 F AP003157.2 703 31510 + chr16_GL456001v2_alt 467729 577427 5 F AP003154.2 1704 111402 + chr16_GL456001v2_alt 577428 686440 6 F AP003153.1 47432 156444 + chr16_GL456001v2_alt 686441 797592 7 F AP003152.1 78965 190116 + chr16_GL456001v2_alt 797593 986611 8 F AP003158.1 5242 194260 + chr16_GL456001v2_alt 986612 1090440 9 F AP003156.1 58300 162128 + chr16_GL456001v2_alt 1090441 1211699 10 F AP003150.1 29466 150724 + chr16_GL456001v2_alt 1211700 1351377 11 F AP003148.1 32496 172173 + chr16_GL456001v2_alt 1351378 1464785 12 F AP004391.1 18460 131867 + chr16_GL456001v2_alt 1464786 1601889 13 F AP005827.1 77762 214865 + chr16_GL456001v2_alt 1601890 1618162 14 F AP006227.1 5996 22268 + chr16_JH584313_alt 1 170253 1 F AP004390.1 1 170253 + chr16_JH584313_alt 170254 275432 2 F AP004392.1 59066 164244 + chr16_JH584313_alt 275433 374389 3 F AP004393.1 41592 140548 + chr16_JH584314_alt 1 170763 1 F AP004639.1 1 170763 + chr17_GL456021v2_alt 1 28130 1 F AL590433.11 1 28130 + chr17_GL456002v2_alt 1 40800 1 F AL450393.4 1 40800 + chr17_GL456002v2_alt 40801 229537 2 F AL136158.25 2001 190737 + chr17_GL456002v2_alt 229538 285971 3 F AL365336.20 2001 58434 + chrX_GL456003v2_alt 1 86674 1 F AL133400.19 1 86674 + chrX_GL456003v2_alt 86675 274792 2 F AL136998.36 101 188218 + chrX_GL456003v2_alt 274793 414761 3 F AL355005.3 1 139969 - chrX_GL456004_alt 1 123835 1 O AL136329.1 1 123835 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 129S7_SvEvBrd-Hprt-b-m2 # (Assembly accession = GCA_000001685.1, asm_id = 98703) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr4_JH584269_alt 1 165908 1 F CU075549.15 1 165908 + chr4_JH584269_alt 165909 284739 2 F CT990633.11 1 118831 - chr4_JH584268_alt 1 69753 1 F CU104690.3 1 69753 + chr4_GL456077_alt 1 83218 1 F CU041261.2 1 83218 + chr4_GL456075_alt 1 125945 1 F CT990634.3 1 125945 + chr4_GL456075_alt 125946 264822 2 F CT990636.5 2001 140877 + chr4_GL456076_alt 1 191695 1 F CT990635.10 1 191695 + chr12_GL456078_alt 1 99963 1 F CU019611.6 1 99963 + chr15_JH584270_alt 1 89177 1 F CU019616.7 1 89177 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 129X1_SvJ # (Assembly accession = GCA_000237955.1, asm_id = 121943) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr1_JH584315_alt 1 220020 1 F AC008100.71 1 220020 + chr1_GL456005_alt 1 154284 1 F AC005992.15 1 154284 + chr4_GL456010_alt 1 76099 1 O AJ251154.1 1 76099 + chr6_GL456012v2_alt 1 214840 1 F AC007305.40 1 214840 + chr6_GL456012v2_alt 214841 312568 2 F AC003061.1 1 97728 - chr6_GL456065_alt 1 198515 1 O AF129005.1 1 198515 + chr11_GL456016_alt 1 161334 1 F AC091629.1 1 161334 + chr14_GL456020_alt 1 105813 1 F AC091520.10 1 105813 + chr16_GL456028v2_alt 1 176974 1 F AC003066.18 1 176974 + chr17_GL456022v2_alt 1 213245 1 O AF110520.1 1 213245 + chr17_GL456022v2_alt 213246 436085 2 O AF100956.1 50961 273800 + chr17_GL456022v2_alt 436086 552250 3 O AF027865.1 22023 138187 + chr17_GL456022v2_alt 552251 772977 4 O AF050157.1 24713 245439 + chr17_GL456022v2_alt 772978 974361 5 O AF030001.1 577 201960 + chr17_GL456022v2_alt 974362 1124159 6 O AF049850.1 89 149886 + chr17_GL456022v2_alt 1124160 1258784 7 O AF109906.1 23781 158405 + chr17_GL456022v2_alt 1258785 1362492 8 O AF109905.1 31838 135545 + chr17_GL456022v2_alt 1362493 1481292 9 O AF109719.2 946 119745 + chr17_GL456022v2_alt 1481293 1521201 10 F AC007080.2 1 39909 + chr17_GL456022v2_alt 1521202 1526861 11 F AC087217.1 13239 18898 + chr17_GL456022v2_alt 1526862 1583991 12 F AC087217.1 20237 77366 + chr17_GL456022v2_alt 1583992 1736643 13 F AF111102.2 5792 158443 + chr17_GL456022v2_alt 1736644 1934410 14 F AC087216.1 28828 226594 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 AKR_J # (Assembly accession = GCA_000000425.1, asm_id = 423) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chrY_GL456080_alt 1 191521 1 F AC184104.1 1 191521 + chrY_GL456081_alt 1 185346 1 F AC184107.1 1 185346 + chrY_GL456082_alt 1 209635 1 F AC185964.1 1 209635 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 A_J # (Assembly accession = GCA_000000325.1, asm_id = 233) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr13_GL455990_alt 1 100803 1 O AF367966.1 1 100803 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 BALB_c # (Assembly accession = GCA_000000335.2, asm_id = 1993) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr7_GL455989_alt 1 55856 1 O X14061.1 1 55856 + chr12_GL456068_alt 1 59641 1 O D78344.1 1 59641 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 CAST_Ei # (Assembly accession = GCA_000000465.2, asm_id = 121983) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr11_JH584316_alt 1 47168 1 F CU695226.4 1 47168 - chr11_JH584316_alt 47169 247497 2 F CU695230.11 2001 202329 + chr11_JH584317_alt 1 186379 1 F CU695229.8 1 186379 + chr18_JH584318_alt 1 190723 1 F CU695231.9 1 190723 + chr18_JH584318_alt 190724 231969 2 F CU695227.4 2001 43246 + chrY_GL456071_alt 1 189119 1 F AC184106.1 1 189119 + chrY_GL456072_alt 1 204663 1 F AC184108.1 1 204663 + chrY_GL456073_alt 1 196014 1 F AC185963.1 1 196014 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 NOD_MrkTac # (Assembly accession = GCA_000001715.1, asm_id = 122003) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr1_JH584320_alt 1 69346 1 F AL671997.10 1 69346 + chr1_JH584320_alt 69347 177519 2 F AL672024.9 2001 110173 + chr1_JH584320_alt 177520 227519 3 N 50000 scaffold yes clone_contig chr1_JH584320_alt 227520 389662 4 F AL596283.10 1 162143 + chr1_JH584320_alt 389663 517181 5 F AL645951.20 2001 129519 + chr1_JH584320_alt 517182 567181 6 N 50000 scaffold yes clone_contig chr1_JH584320_alt 567182 708117 7 F AL645946.6 1 140936 + chr1_JH584320_alt 708118 754323 8 F AL645986.6 2001 48206 + chr1_JH584320_alt 754324 804323 9 N 50000 scaffold yes clone_contig chr1_JH584320_alt 804324 1003859 10 F AL683801.10 1 199536 + chr1_JH584321_alt 1 88916 1 F CU407129.10 1 88916 + chr1_JH584321_alt 88917 242863 2 F CU392853.2 1 153947 - chr1_JH584321_alt 242864 406313 3 F CU406962.8 2001 165450 + chr1_JH584321_alt 406314 436690 4 F CU424488.5 2001 32377 + chr1_JH584321_alt 436691 578951 5 F CU368751.6 2001 144261 + chr1_JH584321_alt 578952 752584 6 F CU442724.6 2001 175633 + chr1_JH584321_alt 752585 858738 7 F CU424489.10 2001 108154 + chr1_JH584321_alt 858739 1017323 8 F CU392848.5 2001 160585 + chr1_JH584321_alt 1017324 1088936 9 F CU442760.6 2001 73613 + chr1_JH584321_alt 1088937 1154924 10 F CU329676.6 2001 67988 + chr1_JH584321_alt 1154925 1333464 11 F CU302198.4 2001 180540 + chr1_JH584321_alt 1333465 1484639 12 F CU407305.6 2001 153175 + chr1_JH584321_alt 1484640 1627288 13 F CU457480.8 2001 144649 + chr1_JH584321_alt 1627289 1738992 14 F CU459074.36 2001 113704 + chr1_JH584321_alt 1738993 1858021 15 F CU372918.5 2001 121029 + chr1_JH584321_alt 1858022 1878937 16 F CU369554.5 2001 22916 + chr1_JH584321_alt 1878938 1934889 17 F CU372922.5 2001 57952 + chr1_JH584321_alt 1934890 2104436 18 F CU372910.8 2001 171547 + chr1_JH584321_alt 2104437 2242214 19 F CU372905.3 2001 139778 + chr1_JH584321_alt 2242215 2243577 20 F CU468163.3 2001 3363 + chr1_JH584321_alt 2243578 2408491 21 F CU392847.12 2001 166914 + chr1_JH584321_alt 2408492 2485442 22 F CU468299.2 2001 78951 + chr1_JH584321_alt 2485443 2535442 23 N 50000 scaffold yes clone_contig chr1_JH584321_alt 2535443 2666794 24 F CU392849.6 1 131352 + chr1_JH584321_alt 2666795 2730059 25 F CU459008.2 2001 65265 + chr1_JH584321_alt 2730060 2786584 26 F CU459207.8 2001 58525 + chr1_JH584321_alt 2786585 2943911 27 F CU368746.3 1 157327 - chr1_JH584321_alt 2943912 3103066 28 F CU405881.7 7568 166722 + chr1_JH584321_alt 3103067 3146328 29 F CU442761.5 2001 45262 + chr1_JH584321_alt 3146329 3290780 30 F CU372923.6 1996 146447 + chr1_JH584321_alt 3290781 3455931 31 F CU372909.5 2001 167151 + chr1_JH584321_alt 3455932 3615568 32 F CU372906.4 2001 161637 + chr1_JH584321_alt 3615569 3760957 33 F CU407006.6 2001 147389 + chr1_JH584322_alt 1 199866 1 F CU222534.13 1 199866 + chr1_JH584322_alt 199867 326027 2 F CU442725.4 2001 128161 + chr3_GL456048_alt 1 161393 1 F AL645966.30 1 161393 + chr3_GL456048_alt 161394 292416 2 F AL645982.26 2001 133023 + chr3_GL456045v2_alt 1 161821 1 F AL645968.6 1 161821 - chr3_GL456049v2_alt 1 104206 1 F AL772247.19 1 104206 + chr3_GL456049v2_alt 104207 243366 2 F AL645970.15 2001 141160 + chr3_JH584323_alt 1 141661 1 F AL645985.30 1 141661 + chr3_JH584323_alt 141662 191661 2 N 50000 scaffold yes clone_contig chr3_JH584323_alt 191662 368796 3 F AL663099.7 1 177135 + chr3_JH584323_alt 368797 375443 4 F AL669922.5 2001 8647 + chr3_JH584323_alt 375444 435256 5 F AL669933.6 2001 61813 + chr3_JH584323_alt 435257 569081 6 F AL645760.15 2001 135825 + chr3_JH584323_alt 569082 701121 7 F AL645757.13 2001 134040 + chr3_JH584323_alt 701122 751121 8 N 50000 scaffold yes clone_contig chr3_JH584323_alt 751122 914795 9 F AL669937.11 1 163674 + chr3_JH584323_alt 914796 986315 10 F AL672281.18 2001 73520 + chr3_JH584323_alt 986316 1153325 11 F AL672260.25 2001 169010 + chr3_GL456044v2_alt 1 209098 1 F CU210935.8 1 209098 + chr3_GL456044v2_alt 209099 325555 2 F CU210953.7 2001 118457 + chr3_GL456044v2_alt 325556 466430 3 F CU210868.10 2001 142875 + chr3_GL456042v2_alt 1 91205 1 F CT010461.9 1 91205 + chr3_GL456042v2_alt 91206 242288 2 F CR936849.22 2001 153083 + chr3_GL456042v2_alt 242289 415260 3 F CR936838.15 2001 174972 + chr3_GL456042v2_alt 415261 546539 4 F CR938729.13 2001 133279 + chr3_GL456042v2_alt 546540 689363 5 F CR936848.6 2001 144824 + chr4_JH584324_alt 1 126360 1 F CU372907.16 1 126360 + chr4_JH584324_alt 126361 307180 2 F CU210837.8 2001 182820 + chr4_JH584324_alt 307181 439087 3 F CU467499.7 2001 133907 + chr4_JH584324_alt 439088 471224 4 F CU207361.21 2001 34137 + chr4_JH584324_alt 471225 672873 5 F CU210866.8 2001 203649 + chr4_JH584324_alt 672874 783322 6 F CU210925.4 2001 112449 + chr4_JH584324_alt 783323 903071 7 F CU207362.5 2001 121749 + chr4_JH584324_alt 903072 1022851 8 F CU234133.8 2001 121780 + chr4_JH584324_alt 1022852 1145204 9 F CU302431.10 2001 124353 + chr4_JH584324_alt 1145205 1147198 10 F CU372919.4 2001 3994 + chr4_JH584324_alt 1147199 1310757 11 F CU210937.2 2001 165559 + chr4_JH584324_alt 1310758 1429367 12 F CU210913.6 2001 120610 + chr4_JH584324_alt 1429368 1598831 13 F CU207347.9 2001 171464 + chr4_JH584324_alt 1598832 1737433 14 F CU207372.6 2001 140602 + chr4_JH584324_alt 1737434 1870343 15 F CU210846.9 2001 134910 + chr4_JH584324_alt 1870344 1939298 16 F CU407307.5 2001 70955 + chr4_JH584324_alt 1939299 1989298 17 N 50000 scaffold yes clone_contig chr4_JH584324_alt 1989299 2010425 18 F CU302433.11 1 21127 + chr4_JH584324_alt 2010426 2199462 19 F CU207375.12 2001 191037 + chr4_JH584324_alt 2199463 2271565 20 F CU459017.18 2001 74103 + chr4_JH584324_alt 2271566 2405918 21 F CU210856.14 2001 136353 + chr4_JH584324_alt 2405919 2455918 22 N 50000 scaffold yes clone_contig chr4_JH584324_alt 2455919 2543367 23 F CU457817.14 1 87449 + chr4_JH584324_alt 2543368 2738758 24 F CU207418.11 1 195391 - chr4_JH584324_alt 2738759 2846412 25 F CU463837.8 2001 109654 + chr4_JH584324_alt 2846413 2899266 26 F CU210874.8 2001 54854 + chr4_JH584324_alt 2899267 3050841 27 F CU207386.8 2001 153575 + chr4_JH584325_alt 1 203314 1 F CU459015.8 1 203314 + chr4_JH584325_alt 203315 215601 2 F CU459014.9 183003 195289 + chr4_GL456053v2_alt 1 160228 1 F CU210924.3 1 160228 - chr4_GL456053v2_alt 160229 236190 2 F CU372908.5 2001 77962 + chr4_GL456053v2_alt 236191 286190 3 N 50000 scaffold yes clone_contig chr4_GL456053v2_alt 286191 427142 4 F CU466551.4 1 140952 + chr4_GL456053v2_alt 427143 477142 5 N 50000 scaffold yes clone_contig chr4_GL456053v2_alt 477143 692816 6 F CU406987.8 1 215674 + chr4_GL456053v2_alt 692817 742816 7 N 50000 scaffold yes clone_contig chr4_GL456053v2_alt 742817 940339 8 F CU463308.8 1 197523 + chr4_GL456053v2_alt 940340 990339 9 N 50000 scaffold yes clone_contig chr4_GL456053v2_alt 990340 1145853 10 F CU210855.6 1 155514 + chr4_GL456053v2_alt 1145854 1195853 11 N 50000 scaffold yes clone_contig chr4_GL456053v2_alt 1195854 1389730 12 F CU207406.7 1 193877 + chr4_GL456053v2_alt 1389731 1442106 13 F CU210867.6 2001 54376 + chr4_GL456053v2_alt 1442107 1553389 14 F CU207376.7 2001 113283 + chr4_GL456053v2_alt 1553390 1708424 15 F CU207417.13 2001 157035 + chr4_GL456053v2_alt 1708425 1845426 16 F CU210838.16 2001 139002 + chr4_GL456053v2_alt 1845427 1993240 17 F CU210865.6 43639 191452 + chr4_GL456053v2_alt 1993241 2031814 18 F CU207387.6 2001 40574 + chr4_GL456053v2_alt 2031815 2152631 19 F CU207385.10 2001 122817 + chr4_GL456053v2_alt 2152632 2307049 20 F CU234132.14 2001 156418 + chr4_GL456053v2_alt 2307050 2437107 21 F CU207405.9 2001 132058 + chr4_GL456053v2_alt 2437108 2575705 22 F CU210839.7 2001 140598 + chr4_GL456053v2_alt 2575706 2769720 23 F CU207415.5 2001 196015 + chr4_GL456053v2_alt 2769721 2860858 24 F CU207374.15 2001 93138 + chr4_GL456053v2_alt 2860859 2970160 25 F CU302290.9 2001 111302 + chr4_GL456053v2_alt 2970161 3052832 26 F CU210912.6 2001 84672 + chr4_GL456053v2_alt 3052833 3205425 27 F CU207384.8 2001 154593 + chr4_JH584326_alt 1 219162 1 F CU459142.15 1 219162 + chr4_JH584326_alt 219163 332984 2 F CU463327.8 2001 115822 + chr4_JH584326_alt 332985 513456 3 F CU210939.14 2001 182472 + chr4_JH584326_alt 513457 624073 4 F CU207373.6 2001 112617 + chr4_JH584326_alt 624074 701831 5 F CU424443.7 2001 79758 + chr4_JH584326_alt 701832 876390 6 F CU210934.6 2001 176559 + chr4_JH584326_alt 876391 1050533 7 F CU210933.11 2001 176143 + chr4_JH584326_alt 1050534 1128009 8 F CU210932.14 2001 79476 + chr4_JH584326_alt 1128010 1226044 9 F CU207371.8 2001 100035 + chr4_JH584326_alt 1226045 1411466 10 F CU207342.6 2001 187422 + chr4_JH584326_alt 1411467 1461473 11 F CU407306.7 2001 52007 + chr4_JH584326_alt 1461474 1625541 12 F CU442759.10 2001 166068 + chr11_JH584327_alt 1 176646 1 F CR933541.6 1 176646 + chr11_JH584327_alt 176647 215559 2 F CR936925.7 2001 40913 + chr11_JH584327_alt 215560 261044 3 F CR933542.3 2001 47485 + chr11_JH584327_alt 261045 472026 4 F CR933731.5 2001 212982 + chr11_JH584327_alt 472027 584536 5 F CR936841.11 2001 114510 + chr11_JH584327_alt 584537 776766 6 F CR933736.12 2001 194230 + chr11_JH584327_alt 776767 963646 7 F CR933735.5 2001 188880 + chr11_JH584327_alt 963647 1063308 8 F CR936845.11 2001 101662 + chr11_JH584327_alt 1063309 1232115 9 F CR936847.6 2001 170807 + chr11_JH584327_alt 1232116 1333459 10 F CU424436.8 2001 103344 + chr11_JH584327_alt 1333460 1550185 11 F CR933817.15 1 216726 - chr11_GL456060v2_alt 1 159511 1 F CU210938.6 1 159511 + chr11_GL456060v2_alt 159512 275934 2 F CU234134.7 2001 118423 + chr11_GL456060v2_alt 275935 360802 3 F CU210936.9 2001 86868 + chr11_GL456060v2_alt 360803 544166 4 F CU207323.5 2001 185364 + chr11_GL456060v2_alt 544167 610362 5 F CU210873.5 2001 68196 + chr11_GL456060v2_alt 610363 655321 6 F CU405929.2 2001 46959 + chr11_GL456060v2_alt 655322 779995 7 F CU207348.13 2001 126674 + chr11_GL456060v2_alt 779996 841630 8 F CU210950.8 2001 63635 + chr11_GL456060v2_alt 841631 1008262 9 F CU207324.10 2001 168632 + chr11_GL456060v2_alt 1008263 1161258 10 F CU207341.13 2001 154996 + chr11_GL456060v2_alt 1161259 1248865 11 F CU406973.8 2001 89607 + chr11_GL456060v2_alt 1248866 1462311 12 F CU207308.6 2001 215446 + chr17_JH584328_alt 1 208736 1 F CU463309.10 1 208736 + chr17_JH584328_alt 208737 250014 2 F CU468137.5 2001 43278 + chr17_JH584328_alt 250015 452324 3 F CU463333.16 2001 204310 + chr17_JH584328_alt 452325 634113 4 F CU468138.7 2001 183789 + chr17_JH584328_alt 634114 701929 5 F CU463313.11 2001 69816 + chr17_JH584328_alt 701930 936889 6 F CU463834.5 2001 236960 + chr17_JH584328_alt 936890 983392 7 F CU468015.2 2001 48503 + chr17_JH584328_alt 983393 1089466 8 F CU463341.5 2001 108074 + chr17_JH584328_alt 1089467 1234308 9 F CU463176.7 2001 146842 + chr17_JH584328_alt 1234309 1406669 10 F CU463845.12 2001 174361 + chr17_JH584328_alt 1406670 1533019 11 F CU466548.15 2001 128350 + chr17_JH584328_alt 1533020 1686467 12 F CU464136.6 2001 155448 + chr17_JH584328_alt 1686468 1777175 13 F CU463307.7 2001 92708 + chr17_JH584328_alt 1777176 1919776 14 F CU463831.7 2001 144601 + chr17_JH584328_alt 1919777 2081591 15 F CU463153.7 2665 164479 + chr17_JH584328_alt 2081592 2156947 16 F CU467817.5 2001 77356 + chr17_JH584328_alt 2156948 2311411 17 F CU463331.8 2001 156464 + chr17_JH584328_alt 2311412 2327879 18 F CU468049.4 2001 18468 + chr17_JH584328_alt 2327880 2494528 19 F CU463853.8 2001 168649 + chr17_JH584328_alt 2494529 2596842 20 F CU466552.10 2001 104314 + chr17_JH584328_alt 2596843 2734122 21 F CU463328.8 2001 139280 + chr17_JH584328_alt 2734123 2834900 22 F CU463312.6 2001 102778 + chr17_JH584328_alt 2834901 2982071 23 F CU463830.6 2001 149171 + chr17_JH584328_alt 2982072 3029374 24 F CU463329.5 2001 49303 + chr17_JH584328_alt 3029375 3192214 25 F CU463842.6 2001 164840 + chr17_JH584328_alt 3192215 3309244 26 F CU463334.13 2001 119030 + chr17_JH584328_alt 3309245 3421203 27 F CU463310.10 2001 113959 + chr17_JH584328_alt 3421204 3622790 28 F CU463311.16 2001 203587 + chr17_JH584328_alt 3622791 3760139 29 F CU463351.10 2001 139349 + chr17_JH584328_alt 3760140 3900268 30 F CU463346.12 2001 142129 + chr17_JH584328_alt 3900269 3902262 31 F CU468124.3 2001 3994 + chr17_JH584328_alt 3902263 4060308 32 F CU463330.8 1 158046 - chr17_JH584328_alt 4060309 4091776 33 F CU570767.2 2001 33468 + chr17_JH584328_alt 4091777 4256209 34 F CU467613.3 2001 166433 + chrna_GL456050_alt 1 142341 1 F AL669919.11 1 142341 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 NOD_ShiLtJ # (Assembly accession = GCA_000001705.1, asm_id = 2013) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr6_JH584264_alt 1 168971 1 F CU210875.9 1 168971 + chr6_JH584264_alt 168972 394373 2 F CU207332.5 2001 227402 + chr6_JH584264_alt 394374 444464 3 F CU469450.4 2001 52091 + chr6_JH584264_alt 444465 619618 4 F CU463286.9 2001 177154 + chr6_JH584264_alt 619619 709987 5 F CU570803.6 2001 92369 + chr6_JH584264_alt 709988 885356 6 F CU424478.6 2001 177369 + chr6_JH584264_alt 885357 935356 7 N 50000 scaffold yes clone_contig chr6_JH584264_alt 935357 1097084 8 F CU442703.8 1 161728 - chr6_JH584264_alt 1097085 1178608 9 F CU467659.6 2001 83524 + chr6_JH584264_alt 1178609 1228608 10 N 50000 scaffold yes clone_contig chr6_JH584264_alt 1228609 1443068 11 F CU407130.7 1 214460 + chr6_JH584264_alt 1443069 1493068 12 N 50000 scaffold yes clone_contig chr6_JH584264_alt 1493069 1593448 13 F CU468027.8 1 100380 + chr6_JH584264_alt 1593449 1759414 14 F CU457745.7 2001 167966 + chr6_GL456054v2_alt 1 258336 1 F CU207393.16 1 258336 + chr6_GL456054v2_alt 258337 407812 2 F CU207379.7 2001 151476 + chr6_GL456054v2_alt 407813 593664 3 F CU210861.18 2001 187852 + chr6_GL456054v2_alt 593665 799053 4 F CU210928.16 2001 207389 + chr6_GL456054v2_alt 799054 849053 5 N 50000 scaffold yes clone_contig chr6_GL456054v2_alt 849054 1003185 6 F CU210899.12 1 154132 + chr6_GL456054v2_alt 1003186 1265571 7 F CU207392.14 1865 264250 + chr6_GL456054v2_alt 1265572 1401044 8 F CU326367.19 2001 137473 + chr6_GL456054v2_alt 1401045 1522059 9 F CU207315.17 2001 123015 + chr6_GL456054v2_alt 1522060 1751385 10 F CU207316.8 2001 231326 + chr6_GL456054v2_alt 1751386 1788171 11 F CU458742.8 2001 38786 + chr6_GL456054v2_alt 1788172 2007603 12 F CU207391.12 2001 221432 + chr6_GL456054v2_alt 2007604 2135617 13 F CU207395.25 2001 130014 + chr6_GL456054v2_alt 2135618 2329557 14 F CU302421.25 2001 195940 + chr6_GL456054v2_alt 2329558 2379557 15 N 50000 scaffold yes clone_contig chr6_GL456054v2_alt 2379558 2533904 16 F CU302237.7 1 154347 + chr6_GL456054v2_alt 2533905 2583904 17 N 50000 scaffold yes clone_contig chr6_GL456054v2_alt 2583905 2661508 18 F CU207333.11 1 77604 + chr6_GL456054v2_alt 2661509 2806127 19 F CU207317.13 2001 146619 + chr6_GL456054v2_alt 2806128 3055388 20 F CU207302.23 2013 251273 + chr6_GL456054v2_alt 3055389 3169500 21 F CU210876.20 2001 116112 + chr6_GL456054v2_alt 3169501 3376949 22 F CU207394.18 2001 209449 + chr6_GL456054v2_alt 3376950 3519065 23 F CU914167.1 1 142116 - chr6_GL456054v2_alt 3519066 3735501 24 F CU207396.16 15837 232272 + chr6_GL456054v2_alt 3735502 3890909 25 F CU210848.9 2001 157408 + chr6_GL456054v2_alt 3890910 3909868 26 F CU210927.8 2001 20959 + chr6_GL456054v2_alt 3909869 3959868 27 N 50000 scaffold yes clone_contig chr6_GL456054v2_alt 3959869 4117284 28 F CU210862.7 1 157416 + chr6_GL456054v2_alt 4117285 4315077 29 F CU207335.14 2001 199793 + chr6_GL456054v2_alt 4315078 4377113 30 F CU467017.8 2001 64036 + chr6_GL456054v2_alt 4377114 4508674 31 F CU468014.15 2001 133561 + chr6_GL456054v2_alt 4508675 4726359 32 F CU207318.9 2001 219685 + chr6_GL456054v2_alt 4726360 4910792 33 F CU210900.9 2001 186433 + chr6_GL456054v2_alt 4910793 4960792 34 N 50000 scaffold yes clone_contig chr6_GL456054v2_alt 4960793 5155256 35 F CU424479.8 1 194464 + chr6_GL456054v2_alt 5155257 5343242 36 F CU302294.10 1 187986 - chr6_GL456054v2_alt 5343243 5393242 37 N 50000 scaffold yes clone_contig chr6_GL456054v2_alt 5393243 5580323 38 F CU207334.6 1 187081 + chr6_GL456054v2_alt 5580324 5779759 39 F CU207319.10 2001 201436 + chr6_GL456054v2_alt 5779760 5865343 40 F CU210926.7 2001 87584 + chr6_GL456054v2_alt 5865344 5956088 41 F CU234138.4 2001 92745 + chr11_JH584265_alt 1 233513 1 F CU407131.8 1 233513 - chr11_JH584265_alt 233514 310347 2 F CU468043.5 2001 78834 + chr11_JH584265_alt 310348 519361 3 F CU406989.5 2001 211014 + chr11_JH584265_alt 519362 667802 4 F CU406969.5 2001 150441 + chr11_JH584265_alt 667803 720761 5 F CU406988.6 2001 54959 + chr11_JH584265_alt 720762 974422 6 F CU393486.7 2001 255661 + chr11_JH584265_alt 974423 1186104 7 F CU407108.18 2001 213682 + chr11_JH584265_alt 1186105 1428310 8 F CU406964.19 2001 244206 + chr11_JH584265_alt 1428311 1546092 9 F CU442701.7 2001 119782 + chr11_JH584265_alt 1546093 1802236 10 F CU406967.7 2001 258144 + chr11_JH584265_alt 1802237 1952491 11 F CU405628.17 2001 152255 + chr11_JH584265_alt 1952492 2061887 12 F CU407332.8 2001 111396 + chr11_JH584265_alt 2061888 2187286 13 F CU407331.10 2001 127399 + chr11_JH584265_alt 2187287 2398784 14 F CU424437.12 2001 213498 + chr11_JH584265_alt 2398785 2616726 15 F CU392839.9 2001 219942 + chr11_JH584265_alt 2616727 2812444 16 F CU406959.5 2001 197718 + chr11_JH584265_alt 2812445 2944697 17 F CU406968.7 2001 134253 + chr11_JH584265_alt 2944698 3086744 18 F CU442702.10 2001 144047 + chr17_JH584267_alt 1 258652 1 F CT010485.17 1 258652 + chr17_JH584267_alt 258653 347374 2 F CT027568.16 2001 90722 + chr17_JH584267_alt 347375 427847 3 F CT573099.7 2001 82473 + chr17_JH584267_alt 427848 608965 4 F CT009677.9 1 181118 - chr17_JH584267_alt 608966 735131 5 F CT009659.6 21104 147269 + chr17_JH584267_alt 735132 923284 6 F CT009658.7 1 188153 - chr17_JH584267_alt 923285 1156926 7 F CT010441.11 1 233642 - chr17_JH584267_alt 1156927 1213175 8 F CT573362.4 1 56249 - chr17_JH584267_alt 1213176 1239059 9 F CU074402.8 2001 27884 + chr17_JH584267_alt 1239060 1462041 10 F CT009661.10 2001 224982 + chr17_JH584267_alt 1462042 1679723 11 F CT009579.20 2001 219682 + chr17_JH584267_alt 1679724 1908920 12 F CT009662.23 2001 231197 + chr17_JH584266_alt 1 216161 1 F CU405655.14 1 216161 + chr17_JH584266_alt 216162 398534 2 F CU406960.9 1843 184215 + chr17_JH584266_alt 398535 502816 3 F CU407132.14 2001 106282 + chr17_JH584266_alt 502817 648365 4 F CU424424.15 2001 147549 + chr17_JH584266_alt 648366 829325 5 F CU407311.8 2001 182960 + chr17_JH584266_alt 829326 983647 6 F CU407310.14 2001 156322 + chr17_JH584266_alt 983648 1211677 7 F CU406965.9 1584 229613 + chr17_JH584266_alt 1211678 1282044 8 F CU406966.9 2001 72367 + chr17_JH584266_alt 1282045 1517566 9 F CU406961.7 2001 237522 + chr17_JH584266_alt 1517567 1657695 10 F CU407309.9 2001 142129 + chr17_JH584266_alt 1657696 1804105 11 F CU442726.8 2001 148410 + chr17_JH584266_alt 1804106 1854105 12 N 50000 scaffold yes clone_contig chr17_JH584266_alt 1854106 1945370 13 F CU467500.8 1 91265 + chr17_JH584266_alt 1945371 2186612 14 F CU367883.10 2001 243242 + chr17_JH584266_alt 2186613 2320759 15 F CU457375.18 2001 136147 + chr17_JH584266_alt 2320760 2525132 16 F CU406999.8 2001 206373 + chr17_JH584266_alt 2525133 2655590 17 F CU406998.9 2001 132458 + chr17_JH584266_alt 2655591 2705590 18 N 50000 scaffold yes clone_contig chr17_JH584266_alt 2705591 2857545 19 F CU463040.8 1 151955 + chr17_JH584266_alt 2857546 3083309 20 F CU407123.9 2001 227764 + chr17_JH584266_alt 3083310 3336240 21 F CU369188.7 2001 254931 + chr17_JH584266_alt 3336241 3458925 22 F CU463184.5 2001 124685 + chr17_JH584266_alt 3458926 3473035 23 F CU459195.4 9733 23842 + chr17_JH584266_alt 3473036 3713017 24 F CU459049.7 2001 241982 + chr17_JH584266_alt 3713018 3846035 25 F CU463185.6 2001 135018 + chr17_JH584266_alt 3846036 4018761 26 F CU462908.7 38387 211112 + chr17_JH584266_alt 4018762 4132140 27 F CU459042.15 102939 216317 + chr17_JH584266_alt 4132141 4293119 28 F CU462863.24 2001 162979 + chr17_JH584266_alt 4293120 4516664 29 F CU462875.11 2001 225545 + chr17_JH584266_alt 4516665 4698892 30 F CU462907.10 2001 184228 + chr17_JH584266_alt 4698893 4910976 31 F CU462864.4 2001 214084 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 PATCHES # (Assembly accession = GCA_000291555.4, asm_id = 493653) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr1_KK082441_alt 1 208212 1 F CR936842.21 1 208212 - chr1_KK082441_alt 208213 456798 2 F CR936839.12 1 248586 - chr3_KQ030484_fix 1 27966 1 F FQ976848.3 1 27966 + chr3_KQ030484_fix 27967 68396 2 F AC160758.3 1 40430 - chr3_KQ030484_fix 68397 214957 3 F AC121905.3 31957 178517 + chr4_KQ030485_fix 1 57848 1 F CR847872.2 2001 59848 + chr4_KQ030485_fix 57849 65847 2 F FO907137.2 2001 9999 + chr4_KQ030485_fix 65848 185548 3 F CT571246.8 2001 121701 + chr4_KQ030486_fix 1 194565 1 F CR550303.18 1 194565 + chr4_KQ030486_fix 194566 208803 2 F FO907135.2 2001 16238 + chr4_KQ030486_fix 208804 399265 3 F CU041251.14 2001 192462 + chr4_KQ030487_fix 1 150514 1 F CU041226.8 1 150514 - chr4_KQ030487_fix 150515 252687 2 F FO082316.3 2001 104173 + chr4_KQ030487_fix 252688 316842 3 F BX936338.11 1 64155 - chr4_KQ030488_fix 1 34023 1 F CU467819.3 2001 36023 + chr4_KQ030488_fix 34024 45901 2 F FQ976854.3 2001 13878 + chr4_KQ030489_fix 1 1723 1 W CAAA01124564.1 1 1723 + chr4_KQ030489_fix 1724 1823 2 N 100 scaffold yes clone_contig chr4_KQ030489_fix 1824 8652 3 W CAAA01124560.1 1 6829 + chr4_KQ030489_fix 8653 8774 4 N 122 scaffold yes clone_contig chr4_KQ030489_fix 8775 10048 5 W CAAA01197276.1 1 1274 + chr4_KQ030489_fix 10049 48411 6 F FO907130.1 1 38363 + chr4_KQ030489_fix 48412 63138 7 F FQ976844.3 2001 16727 + chr4_KQ030489_fix 63139 67025 8 F FQ976851.4 2001 5887 + chr4_KQ030489_fix 67026 188269 9 F BX004791.6 2001 123244 + chr4_JH792826_fix 1 169559 1 F AL611982.26 2001 171559 + chr4_JH792826_fix 169560 361809 2 F AL611930.25 2001 194250 + chr4_JH792826_fix 361810 368286 3 F AL929385.12 2001 8477 + chr5_JH792827_fix 1 165377 1 F AC244695.2 1 165377 + chr5_JH792827_fix 165378 172478 2 F AC239617.4 1 7101 - chr5_JH792827_fix 172479 205713 3 F AC244694.2 1 33235 - chr6_KK082443_fix 1 175369 1 F CU424478.6 2001 177369 + chr6_KK082443_fix 175370 225369 2 N 50000 scaffold yes clone_contig chr6_KK082443_fix 225370 306893 3 F CU467659.6 2001 83524 - chr6_KK082443_fix 306894 468621 4 F CU442703.8 1 161728 + chr6_KK082443_fix 468622 620323 5 F CU457745.7 16265 167966 + chr6_KK082442_fix 1 12720 1 F AC116115.11 60805 73524 + chr6_KK082442_fix 12721 13525 2 F FO681326.1 1 805 + chr6_KK082442_fix 13526 154766 3 F AC116115.11 74331 215571 + chr7_JH792828_fix 1 136155 1 F AC132586.3 1 136155 + chr7_JH792828_fix 136156 314262 2 F AC245272.2 36458 214564 + chr7_JH792828_fix 314263 473738 3 F AC217111.9 13767 173242 + chr9_KQ030490_fix 1 74523 1 F AC168054.4 62452 136974 + chr9_KQ030490_fix 74524 81254 2 W AEKQ02060806.1 4377 11107 - chr9_KQ030490_fix 81255 120154 3 F AC242672.2 1 38900 - chr9_KB469738v3_fix 1 44494 1 W CAAA01180111.1 1 44494 + chr9_KB469738v3_fix 44495 44594 2 N 100 scaffold yes clone_contig chr9_KB469738v3_fix 44595 62215 3 W CAAA01089676.1 1 17621 + chr9_KB469738v3_fix 62216 66692 4 N 4477 scaffold yes clone_contig chr9_KB469738v3_fix 66693 68205 5 W CAAA01118509.1 1 1513 + chr9_KB469738v3_fix 68206 69674 6 N 1469 scaffold yes clone_contig chr9_KB469738v3_fix 69675 78998 7 W CAAA01216754.1 1 9324 + chr9_KB469738v3_fix 78999 79098 8 N 100 scaffold yes clone_contig chr9_KB469738v3_fix 79099 96156 9 W CAAA01202134.1 1 17058 - chr9_KB469738v3_fix 96157 98453 10 N 2297 scaffold yes clone_contig chr9_KB469738v3_fix 98454 99678 11 W CAAA01119745.1 1 1225 + chr9_KB469738v3_fix 99679 99778 12 N 100 scaffold yes clone_contig chr9_KB469738v3_fix 99779 102243 13 W CAAA01090811.1 1 2465 - chr9_KB469738v3_fix 102244 102430 14 N 187 scaffold yes clone_contig chr9_KB469738v3_fix 102431 148736 15 W CAAA01144662.1 1 46306 - chr9_KB469738v3_fix 148737 153927 16 N 5191 scaffold yes clone_contig chr9_KB469738v3_fix 153928 187845 17 W CAAA01125382.1 1 33918 + chr9_KB469738v3_fix 187846 187975 18 N 130 scaffold yes clone_contig chr9_KB469738v3_fix 187976 189339 19 W CAAA01108492.1 1 1364 + chr9_KB469738v3_fix 189340 189867 20 N 528 scaffold yes clone_contig chr9_KB469738v3_fix 189868 192135 21 W CAAA01217562.1 1 2268 + chr9_KB469738v3_fix 192136 192235 22 N 100 scaffold yes clone_contig chr9_KB469738v3_fix 192236 208421 23 W CAAA01154301.1 1 16186 + chr9_KB469738v3_fix 208422 208521 24 N 100 scaffold yes clone_contig chr9_KB469738v3_fix 208522 210641 25 W CAAA01187796.1 13375 15494 - chr10_KQ030491_fix 1 25109 1 F FQ976852.4 1 25109 + chr10_KQ030491_fix 25110 129865 2 F AC170751.2 613 105368 + chr11_KB469739_fix 1 40481 1 F AL604044.11 2001 42481 + chr11_KB469739_fix 40482 261757 2 F AL593853.12 2001 223276 + chr11_KB469739_fix 261758 331111 3 F AL929089.5 2001 71354 + chr12_KB469740_fix 1 109987 1 F AC165954.3 1 109987 - chr12_KB469740_fix 109988 316140 2 F AC152063.5 1 206153 - chr15_KQ030492_fix 1 31482 1 F FO082328.3 1 31482 + chr15_KQ030492_fix 31483 166012 2 F AC149294.8 2001 136530 + chr15_KQ030493_fix 1 11074 1 F FO082315.3 1 11074 + chr15_KQ030493_fix 11075 269476 2 F AC164883.5 2001 260402 + chr16_KB469741_fix 1 170224 1 F AC084822.36 25105 195328 + chr16_KB469741_fix 170225 172042 2 F AC133487.14 94323 96140 - chr16_KB469741_fix 172043 173329 3 O FO393431.1 1 1287 - chr16_KB469741_fix 173330 267241 4 F AC133487.14 9 93920 - chr17_KB469742_fix 1 12216 1 F CT033757.6 32156 44371 + chr17_KB469742_fix 12217 212742 2 F CT010495.11 2001 202526 + chr17_KB469742_fix 212743 237074 3 F AC154423.2 1 24332 - chr17_KB469742_fix 237075 299083 4 F AC107776.12 1 62009 - chr17_KB469742_fix 299084 399248 5 F AC154343.1 1 100165 - chr17_KB469742_fix 399249 486439 6 F AC110514.9 1 87191 - chr17_KB469742_fix 486440 644875 7 F AC154679.2 1 158436 - chr17_KB469742_fix 644876 848684 8 F CT009635.18 1 203809 - chr17_KB469742_fix 848685 1008886 9 F AC182748.2 1 160202 - chr17_KB469742_fix 1008887 1059955 10 F AC154443.2 1 51069 - chr18_JH792829_fix 1 92245 1 F AC079290.12 1 92245 - chr18_JH792829_fix 92246 251601 2 F AC243907.3 28831 188186 + chr18_JH792829_fix 251602 352455 3 F AC161791.10 1 100854 - chr19_JH792830_fix 1 111841 1 F AC109138.10 22404 134244 + chr19_JH792830_fix 111842 112259 2 O FO082289.1 1 418 + chr19_JH792830_fix 112260 246751 3 F AC109138.10 134664 269155 + chr19_KQ030494_fix 1 188571 1 F AC127556.4 25472 214042 + chr19_KQ030494_fix 188572 353967 2 F AC167245.2 32824 198219 + chr19_KQ030494_fix 353968 497576 3 F AC124394.4 1 143609 - chr19_KQ030494_fix 497577 506812 4 F FQ976842.3 2001 11236 + chrX_KQ030496_fix 1 211333 1 F BX890553.2 794 212126 + chrX_KQ030496_fix 211334 260447 2 F FO082322.2 1376 50489 + chrX_KQ030497_fix 1 22214 1 F LO000004.1 1 22214 + chrX_KQ030497_fix 22215 219721 2 F CR556704.4 2001 199507 + chrX_JH792831_fix 1 4311 1 W CAAA01079535.1 1 4311 + chrX_JH792831_fix 4312 12373 2 F FP104547.6 1 8062 + chrX_JH792831_fix 12374 182256 3 F AL590629.16 2001 171883 + chrX_KQ030495_fix 1 84659 1 F BX284683.8 2001 86659 + chrX_KQ030495_fix 84660 262999 2 F CU682339.17 2001 180340 + chrX_KQ030495_fix 263000 271799 3 F FO907129.2 2001 10800 + chrX_KQ030495_fix 271800 490000 4 F AL669898.17 2001 220201 + chrY_JH792832_fix 1 220604 1 F AC233742.3 1 220604 - chrY_JH792832_fix 220605 327486 2 F AC226687.3 57729 164610 + chrY_JH792832_fix 327487 428123 3 F AC212990.3 1 100637 - chrY_JH792832_fix 428124 544189 4 F AC190179.3 58256 174321 + chrY_JH792834_fix 1 134106 1 F AC243554.2 1 134106 + chrY_JH792834_fix 134107 251544 2 F AC242685.3 56669 174106 + chrY_JH792834_fix 251545 331480 3 F AC202135.2 75469 155404 + chrY_JH792833_fix 1 168839 1 F AC240971.2 1 168839 - chrY_JH792833_fix 168840 221588 2 F AC242410.3 1 52749 - # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 RIII # (Assembly accession = GCA_000001725.1, asm_id = 122023) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr12_GL456349_alt 1 83612 1 F AC007307.77 1 83612 + chr18_GL456070_alt 1 85548 1 F AC007665.24 1 85548 + # AGP dumped from Genomic-Collection: Assembly GRCm38.p4 UNKNOWN # (Assembly accession = GCA_000000385.2, asm_id = 121993) # Scaffolds-from-components ##agp-version 2.0 # Format: object object_beg object_end part_number component_type component_id component_beg component_end orientation # Gaps: object object_beg object_end part_number N gap_length gap_type linkage evidence chr4_GL456064_alt 1 138473 1 F AC003019.1 1 138473 + chr4_GL456009_alt 1 191271 1 O AB121692.1 1 191271 + chr4_GL456009_alt 191272 191306 2 N 35 scaffold yes paired-ends chr4_GL456009_alt 191307 196165 3 O AB121692.1 191307 196165 + chr4_GL456009_alt 196166 196195 4 N 30 scaffold yes paired-ends chr4_GL456009_alt 196196 240498 5 O AB121692.1 196196 240498 + chr10_GL456015_alt 1 77891 1 O AY158230.1 1 77891 + chr17_GL456069_alt 1 138490 1 O AJ249895.1 1 138490 + chr19_JH584319_alt 1 25407 1 O AF322393.1 1 25407 +