This directory contains reciprocal-best netted chains for mm39-loxAfr3.

 - mm39.loxAfr3.rbest.net.gz: mm39-referenced recip.best net to loxAfr3.
 - mm39.loxAfr3.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from mm39 to loxAfr3 through the recip.best net.

 - loxAfr3.mm39.rbest.net.gz: loxAfr3-referenced recip.best net.
 - loxAfr3.mm39.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/*.mm39.loxAfr3.net.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                        Last modified      Size  Description
Parent Directory - axtRBestNet/ 2021-03-15 15:25 - loxAfr3.mm39.rbest.chain.gz 2020-11-25 00:25 49M loxAfr3.mm39.rbest.net.gz 2020-11-25 00:25 105M md5sum.txt 2020-11-25 00:27 244 mm39.loxAfr3.rbest.chain.gz 2020-11-25 00:26 49M mm39.loxAfr3.rbest.net.gz 2020-11-25 00:27 76M