This directory contains the data files required as input to
the liftOver utility. This tool -- which requires a Linux
platform -- allows the mass conversion of coordinates from
one assembly to another. The executable file for the utility can
be downloaded from http://hgdownload.cse.ucsc.edu/admin/exe/
The file names reflect the assembly conversion data contained within
in the format <db1>To<db2>.over.chain.gz. For example, a file named
hg15Tohg16.zip file contains the liftOver data needed to convert hg15
(Human Build 33) coordinates to hg16 (Human Build 34). If no file is
available for the assembly in which you're interested, please send a
request to the genome mailing list (genome@soe.ucsc.edu) and we will
attempt to provide you with one.
To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the
appropriate goldenPath/<assembly>/liftOver directory. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
Name Last modified Size Description
Parent Directory -
md5sum.txt 01-Mar-2016 12:39 527
mm5ToBosTau1.over.chain.gz 22-Feb-2005 10:11 53M
mm5ToCanFam1.over.chain.gz 07-Jan-2005 15:04 66M
mm5ToGalGal2.over.chain.gz 20-Dec-2005 14:47 5.9M
mm5ToHg17.over.chain.gz 20-Dec-2005 14:47 77M
mm5ToMm6.over.chain.gz 02-May-2005 09:40 6.5M
mm5ToMm7.over.chain.gz 21-Nov-2005 00:24 6.4M
mm5ToMm8.over.chain.gz 05-Jun-2006 16:00 5.4M
mm5ToMm10.over.chain.gz 26-Feb-2016 20:04 3.6M
mm5ToRn3.over.chain.gz 19-May-2005 12:54 75M