This directory contains compressed multiple alignments of the
following assemblies to the mouse genome (mm5, May 2004):
- rat (rn3, Jun. 2003)
- human (hg17, May 2004)
- dog (canFam1, Jul. 2004)
- chicken (galGal2, Feb. 2004)
Files included in this directory:
- chr*.maf.gz files: each contain all the alignments to that
particular mouse chromosome.
For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/mm5/multiz5way. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely usable for any
purpose. For data use restrictions regarding the dog and chicken
genomes, see http://genome.ucsc.edu/goldenPath/credits.html.
Name Last modified Size Description
Parent Directory -
chr1.maf.gz 03-Aug-2004 11:30 155M
chr1_random.maf.gz 03-Aug-2004 11:56 803K
chr2.maf.gz 03-Aug-2004 12:01 158M
chr2_random.maf.gz 03-Aug-2004 12:01 5.3M
chr3.maf.gz 03-Aug-2004 12:04 124M
chr3_random.maf.gz 03-Aug-2004 12:04 1.4M
chr4.maf.gz 03-Aug-2004 12:08 125M
chr4_random.maf.gz 03-Aug-2004 12:08 5.3M
chr5.maf.gz 03-Aug-2004 12:11 118M
chr5_random.maf.gz 03-Aug-2004 12:11 1.4M
chr6.maf.gz 03-Aug-2004 12:15 120M
chr6_random.maf.gz 03-Aug-2004 12:15 858K
chr7.maf.gz 03-Aug-2004 12:18 101M
chr7_random.maf.gz 03-Aug-2004 12:18 3.7M
chr8.maf.gz 03-Aug-2004 12:21 103M
chr8_random.maf.gz 03-Aug-2004 12:21 808K
chr9.maf.gz 03-Aug-2004 12:23 105M
chr9_random.maf.gz 03-Aug-2004 12:23 382K
chr10.maf.gz 03-Aug-2004 11:33 105M
chr10_random.maf.gz 03-Aug-2004 11:33 267K
chr11.maf.gz 03-Aug-2004 11:36 107M
chr12.maf.gz 03-Aug-2004 11:39 94M
chr12_random.maf.gz 03-Aug-2004 11:39 1.2M
chr13.maf.gz 03-Aug-2004 11:42 91M
chr13_random.maf.gz 03-Aug-2004 11:42 1.0M
chr14.maf.gz 03-Aug-2004 11:45 95M
chr14_random.maf.gz 03-Aug-2004 11:45 1.1M
chr15.maf.gz 03-Aug-2004 11:48 83M
chr15_random.maf.gz 03-Aug-2004 11:48 358K
chr16.maf.gz 03-Aug-2004 11:50 80M
chr16_random.maf.gz 03-Aug-2004 11:50 774K
chr17.maf.gz 03-Aug-2004 11:52 71M
chr17_random.maf.gz 03-Aug-2004 11:52 654K
chr18.maf.gz 03-Aug-2004 11:54 74M
chr18_random.maf.gz 03-Aug-2004 11:54 699K
chr19.maf.gz 03-Aug-2004 11:56 52M
chr19_random.maf.gz 03-Aug-2004 11:56 371K
chrM.maf.gz 03-Aug-2004 12:23 29K
chrUn_random.maf.gz 03-Aug-2004 12:24 26M
chrX.maf.gz 03-Aug-2004 12:27 97M
chrX_random.maf.gz 03-Aug-2004 12:27 4.1M
chrY.maf.gz 03-Aug-2004 12:27 14M
chrY_random.maf.gz 03-Aug-2004 12:27 164K
md5sum.txt 03-Aug-2004 12:32 2.1K