This directory contains compressed multiple alignments of the
following assemblies to the mouse genome (mm5, May 2004):
- rat (rn3, Jun. 2003)
- human (hg17, May 2004)
- dog (canFam1, Jul. 2004)
- chicken (galGal2, Feb. 2004)
Files included in this directory:
- chr*.maf.gz files: each contain all the alignments to that
particular mouse chromosome.
For a description of multiple alignment format (MAF), see
http://genome.ucsc.edu/goldenPath/help/maf.html.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu,
then go to the directory goldenPath/mm5/multiz5way. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
All the files in this directory are freely usable for any
purpose. For data use restrictions regarding the dog and chicken
genomes, see http://genome.ucsc.edu/goldenPath/credits.html.
Name Last modified Size Description
Parent Directory -
md5sum.txt 03-Aug-2004 12:32 2.1K
chrM.maf.gz 03-Aug-2004 12:23 29K
chrY_random.maf.gz 03-Aug-2004 12:27 164K
chr10_random.maf.gz 03-Aug-2004 11:33 267K
chr15_random.maf.gz 03-Aug-2004 11:48 358K
chr19_random.maf.gz 03-Aug-2004 11:56 371K
chr9_random.maf.gz 03-Aug-2004 12:23 382K
chr17_random.maf.gz 03-Aug-2004 11:52 654K
chr18_random.maf.gz 03-Aug-2004 11:54 699K
chr16_random.maf.gz 03-Aug-2004 11:50 774K
chr1_random.maf.gz 03-Aug-2004 11:56 803K
chr8_random.maf.gz 03-Aug-2004 12:21 808K
chr6_random.maf.gz 03-Aug-2004 12:15 858K
chr13_random.maf.gz 03-Aug-2004 11:42 1.0M
chr14_random.maf.gz 03-Aug-2004 11:45 1.1M
chr12_random.maf.gz 03-Aug-2004 11:39 1.2M
chr3_random.maf.gz 03-Aug-2004 12:04 1.4M
chr5_random.maf.gz 03-Aug-2004 12:11 1.4M
chr7_random.maf.gz 03-Aug-2004 12:18 3.7M
chrX_random.maf.gz 03-Aug-2004 12:27 4.1M
chr2_random.maf.gz 03-Aug-2004 12:01 5.3M
chr4_random.maf.gz 03-Aug-2004 12:08 5.3M
chrY.maf.gz 03-Aug-2004 12:27 14M
chrUn_random.maf.gz 03-Aug-2004 12:24 26M
chr19.maf.gz 03-Aug-2004 11:56 52M
chr17.maf.gz 03-Aug-2004 11:52 71M
chr18.maf.gz 03-Aug-2004 11:54 74M
chr16.maf.gz 03-Aug-2004 11:50 80M
chr15.maf.gz 03-Aug-2004 11:48 83M
chr13.maf.gz 03-Aug-2004 11:42 91M
chr12.maf.gz 03-Aug-2004 11:39 94M
chr14.maf.gz 03-Aug-2004 11:45 95M
chrX.maf.gz 03-Aug-2004 12:27 97M
chr7.maf.gz 03-Aug-2004 12:18 101M
chr8.maf.gz 03-Aug-2004 12:21 103M
chr9.maf.gz 03-Aug-2004 12:23 105M
chr10.maf.gz 03-Aug-2004 11:33 105M
chr11.maf.gz 03-Aug-2004 11:36 107M
chr5.maf.gz 03-Aug-2004 12:11 118M
chr6.maf.gz 03-Aug-2004 12:15 120M
chr3.maf.gz 03-Aug-2004 12:04 124M
chr4.maf.gz 03-Aug-2004 12:08 125M
chr1.maf.gz 03-Aug-2004 11:30 155M
chr2.maf.gz 03-Aug-2004 12:01 158M