This directory contains the Mar. 2007 assembly of the platypus genome
(ornAna1, WUSTL version 5.0.1), as well as repeat annotations and GenBank
sequences.
This assembly was produced by the Genome Sequencing Center at the
Washington University School of Medicine in St. Louis.
For more information on the platypus genome, see the project website:
http://genome.wustl.edu/genome.cgi?GENOME=Ornithorhynchus%20anatinus
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
http://genome.ucsc.edu/cgi-bin/hgTables?db=ornAna1
and click the "describe table schema" button. There is also a "view
table schema" link on the configuration page for each track.
---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to
the directory goldenPath/ornAna1/database/. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
The Platypus sequence is made freely available to the community by the
Genome Sequencing Center, Washington University School of Medicine, with
the following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged in
databases.
2. Users are free to use the data in scientific papers analyzing these data
if the providers of these data are properly acknowledged. See
http://genome.ucsc.edu/goldenPath/credits.html for credit information.
3. The centers producing the data reserve the right to publish the initial
large-scale analyses of the data set, including large-scale identification
of regions of evolutionary conservation and large-scale genomic assembly.
Large-scale refers to regions with size on the order of a chromosome (that
is, 30 Mb or more).
4. Any redistribution of the data should carry this notice.
All the files and tables in this directory are freely usable for any purpose.
Name Last modified Size Description
Parent Directory -
chainMonDom5Link.txt.gz 2009-09-27 11:52 327M
xenoMrna.txt.gz 2020-08-22 14:19 306M
chainBosTau7Link.txt.gz 2012-06-16 23:15 255M
chainHg19Link.txt.gz 2009-10-11 08:37 219M
chainPonAbe2Link.txt.gz 2008-03-09 05:25 202M
chainCalJac1Link.txt.gz 2008-04-24 06:02 183M
chainMm10Link.txt.gz 2013-10-27 19:19 176M
chainEquCab2Link.txt.gz 2009-12-13 13:03 148M
rmsk.txt.gz 2007-07-26 10:58 118M
chainGalGal3Link.txt.gz 2007-05-26 09:45 85M
chainMonDom5.txt.gz 2009-09-27 11:54 84M
chainAnoCar2Link.txt.gz 2011-10-16 03:58 52M
chainBosTau7.txt.gz 2012-06-16 23:08 46M
chainHg19.txt.gz 2009-10-11 08:36 44M
chainPonAbe2.txt.gz 2008-03-09 05:21 42M
quality.txt.gz 2008-11-30 12:22 42M
chainCalJac1.txt.gz 2008-04-24 05:54 40M
multiz6way.txt.gz 2011-08-21 03:55 39M
xenoRefSeqAli.txt.gz 2020-08-22 14:19 31M
chainEquCab2.txt.gz 2009-12-13 13:02 31M
xenoRefGene.txt.gz 2020-08-22 14:19 30M
chainMm10.txt.gz 2013-10-27 19:18 30M
xenoRefFlat.txt.gz 2020-08-22 14:19 27M
phastCons6way.txt.gz 2007-05-26 10:25 23M
chainGalGal3.txt.gz 2007-05-26 09:44 22M
netMonDom5.txt.gz 2009-09-27 11:51 21M
netHg19.txt.gz 2009-10-11 08:36 18M
netPonAbe2.txt.gz 2008-03-09 05:29 18M
multiz6wayFrames.txt.gz 2011-08-21 03:56 18M
netCalJac1.txt.gz 2008-04-24 06:10 17M
netBosTau7.txt.gz 2012-06-16 23:10 17M
netEquCab2.txt.gz 2009-12-13 13:02 13M
netMm10.txt.gz 2013-10-27 19:19 13M
genomicSuperDups.txt.gz 2007-12-13 12:02 13M
chainAnoCar2.txt.gz 2011-10-16 03:59 12M
gc5Base.txt.gz 2007-05-26 10:20 12M
nestedRepeats.txt.gz 2007-10-02 11:46 11M
netGalGal3.txt.gz 2007-05-26 10:23 11M
simpleRepeat.txt.gz 2007-05-26 10:27 11M
netAnoCar2.txt.gz 2011-10-16 03:59 8.0M
phastConsElements6way.txt.gz 2007-05-26 10:25 7.0M
multiz6waySummary.txt.gz 2011-08-21 03:55 6.8M
gold.txt.gz 2007-05-26 10:21 5.7M
ensPep.txt.gz 2019-02-10 03:42 4.9M
gap.txt.gz 2007-05-26 10:19 2.7M
chromAlias.txt.gz 2017-09-03 05:42 2.7M
cpgIslandExtUnmasked.txt.gz 2014-06-01 17:36 2.3M
blastHg18KG.txt.gz 2009-12-20 15:22 2.2M
ensGene.txt.gz 2019-02-10 03:42 2.0M
augustusGene.txt.gz 2015-07-26 17:13 1.9M
cpgIslandExt.txt.gz 2011-12-04 15:03 1.6M
all_est.txt.gz 2011-04-11 17:24 1.4M
chromInfo.txt.gz 2007-05-26 10:19 1.0M
cytoBandIdeo.txt.gz 2013-04-28 19:34 1.0M
estOrientInfo.txt.gz 2011-04-11 17:24 418K
ensGtp.txt.gz 2019-02-10 03:42 323K
intronEst.txt.gz 2011-04-18 07:22 196K
gbLoaded.txt.gz 2020-08-22 14:19 109K
microsat.txt.gz 2015-08-23 22:40 96K
ensemblSource.txt.gz 2019-02-10 03:42 95K
ensemblToGeneName.txt.gz 2019-02-10 03:42 72K
trackDb.txt.gz 2023-03-28 13:51 40K
trackDb_pushedout.txt.gz 2021-12-27 12:22 39K
wssdCoverage.txt.gz 2007-09-21 12:13 32K
tRNAs.txt.gz 2012-04-23 07:43 25K
refSeqAli.txt.gz 2020-03-01 08:08 22K
refGene.txt.gz 2020-08-22 14:19 21K
refFlat.txt.gz 2020-08-22 14:19 19K
all_mrna.txt.gz 2018-04-01 07:38 14K
mrnaOrientInfo.txt.gz 2020-03-01 08:07 12K
tableDescriptions.txt.gz 2024-05-11 02:03 7.3K
tableList.txt.gz 2024-05-12 03:15 4.8K
genomicSuperDups.sql 2007-12-13 12:02 2.6K
netMonDom5.sql 2009-09-27 11:51 2.3K
netEquCab2.sql 2009-12-13 13:02 2.3K
netHg19.sql 2009-10-11 08:36 2.3K
blastHg18KG.sql 2009-12-20 15:22 2.3K
all_est.sql 2011-04-11 17:24 2.3K
netPonAbe2.sql 2008-03-09 05:29 2.2K
netGalGal3.sql 2007-05-26 10:22 2.2K
netCalJac1.sql 2008-04-24 06:09 2.2K
xenoRefSeqAli.sql 2020-08-22 14:19 2.1K
xenoMrna.sql 2020-08-22 14:19 2.1K
refSeqAli.sql 2020-03-01 08:08 2.1K
all_mrna.sql 2018-04-01 07:38 2.1K
netMm10.sql 2013-10-27 19:19 2.1K
trackDb_pushedout.sql 2021-12-27 12:22 2.1K
trackDb.sql 2023-03-28 13:51 2.1K
intronEst.sql 2011-04-18 07:22 2.0K
netBosTau7.sql 2012-06-16 23:10 2.0K
netAnoCar2.sql 2011-10-16 03:59 2.0K
xenoRefGene.sql 2020-08-22 14:19 2.0K
refGene.sql 2020-08-22 14:19 1.9K
augustusGene.sql 2015-07-26 17:13 1.9K
ensGene.sql 2019-02-10 03:42 1.9K
simpleRepeat.sql 2007-05-26 10:27 1.9K
nestedRepeats.sql 2007-10-02 11:46 1.9K
rmsk.sql 2007-07-26 10:56 1.9K
estOrientInfo.sql 2011-04-11 17:24 1.8K
chainMonDom5.sql 2009-09-27 11:54 1.8K
chainEquCab2.sql 2009-12-13 13:02 1.8K
hgFindSpec_pushedout.sql 2021-12-27 12:22 1.8K
mrnaOrientInfo.sql 2020-03-01 08:07 1.8K
chainHg19.sql 2009-10-11 08:36 1.8K
hgFindSpec.sql 2023-03-28 13:51 1.8K
xenoRefFlat.sql 2020-08-22 14:19 1.7K
phastCons6way.sql 2007-05-26 10:24 1.7K
refFlat.sql 2020-08-22 14:19 1.7K
quality.sql 2008-11-30 12:21 1.7K
gc5Base.sql 2007-05-26 10:20 1.7K
cpgIslandExtUnmasked.sql 2014-06-01 17:36 1.7K
chainMm10.sql 2013-10-27 19:18 1.7K
tRNAs.sql 2012-04-23 07:43 1.7K
multiz6wayFrames.sql 2011-08-21 03:56 1.7K
chainPonAbe2.sql 2008-03-09 05:20 1.7K
chainGalGal3.sql 2007-05-26 09:44 1.7K
chainCalJac1.sql 2008-04-24 05:52 1.7K
chainBosTau7.sql 2012-06-16 23:07 1.6K
chainAnoCar2.sql 2011-10-16 03:59 1.6K
cpgIslandExt.sql 2011-12-04 15:03 1.6K
gbLoaded.sql 2020-08-22 14:19 1.6K
gold.sql 2007-05-26 10:20 1.6K
tableList.sql 2024-05-12 03:15 1.6K
chainMonDom5Link.sql 2009-09-27 11:51 1.5K
chainEquCab2Link.sql 2009-12-13 13:03 1.5K
chainMm10Link.sql 2013-10-27 19:18 1.5K
chainHg19Link.sql 2009-10-11 08:37 1.5K
cytoBandIdeo.sql 2013-04-28 19:34 1.5K
multiz6waySummary.sql 2011-08-21 03:55 1.5K
gap.sql 2007-05-26 10:19 1.5K
microsat.sql 2015-08-23 22:40 1.5K
chainBosTau7Link.sql 2012-06-16 23:11 1.5K
chainAnoCar2Link.sql 2011-10-16 03:58 1.5K
multiz6way.sql 2011-08-21 03:55 1.5K
tableDescriptions.sql 2024-05-11 02:03 1.5K
phastConsElements6way.sql 2007-05-26 10:25 1.4K
chromAlias.sql 2017-09-03 05:42 1.4K
ensGtp.sql 2019-02-10 03:42 1.4K
chainPonAbe2Link.sql 2008-03-09 05:21 1.4K
chainGalGal3Link.sql 2007-05-26 09:44 1.4K
chainCalJac1Link.sql 2008-04-24 05:55 1.4K
history.sql 2007-05-26 10:21 1.4K
bigFiles.sql 2024-05-12 03:15 1.4K
extFile.sql 2011-08-21 03:56 1.4K
ensemblToGeneName.sql 2019-02-10 03:42 1.4K
grp.sql 2014-03-02 04:14 1.4K
ensemblSource.sql 2019-02-10 03:42 1.4K
ensPep.sql 2019-02-10 03:42 1.3K
wssdCoverage.sql 2007-09-21 12:13 1.3K
chromInfo.sql 2007-05-26 10:19 1.2K
hgFindSpec.txt.gz 2023-03-28 13:51 872
hgFindSpec_pushedout.txt.gz 2021-12-27 12:22 833
history.txt.gz 2007-05-26 10:21 734
grp.txt.gz 2014-03-02 04:14 208
extFile.txt.gz 2011-08-21 03:56 85
bigFiles.txt.gz 2024-05-12 03:15 33