This directory contains the data files required as input to the
liftOver utility. This tool -- which requires a Linux platform --
allows the mass conversion of coordinates from one assembly to
another. The executable file for the utility can be downloaded from
http://hgdownload.cse.ucsc.edu/admin/exe/
The file names reflect the assembly conversion data contained within
in the format <db1>To<Db2>.over.chain.gz. For example, a file named
hg15ToHg16.over.chain.gz file contains the liftOver data needed to
convert hg15 (Human Build 33) coordinates to hg16 (Human Build 34).
If no file is available for the assembly in which you're interested,
please send a request to the genome mailing list
(genome@soe.ucsc.edu) and we will attempt to provide you with one.
To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.cse.ucsc.edu (user: anonymous),
then cd to goldenPath/ornAna1/liftOver. To download multiple files,
use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
Name Last modified Size Description
Parent Directory -
ornAna1ToMm8.over.chain.gz 02-Mar-2007 15:42 13M
ornAna1ToMonDom4.over.chain.gz 03-Apr-2007 17:52 29M
ornAna1ToGalGal3.over.chain.gz 09-Apr-2007 14:22 10M
ornAna1ToHg18.over.chain.gz 09-Apr-2007 18:12 20M
ornAna1ToAnoCar1.over.chain.gz 16-Apr-2007 12:04 8.7M
ornAna1ToMm9.over.chain.gz 25-Sep-2007 10:21 11M
ornAna1ToPonAbe2.over.chain.gz 19-Nov-2007 16:27 17M
ornAna1ToCalJac1.over.chain.gz 13-Dec-2007 13:25 17M
ornAna1ToBosTau4.over.chain.gz 13-Mar-2008 20:58 15M
ornAna1ToMonDom5.over.chain.gz 02-Mar-2009 16:39 19M
ornAna1ToHg19.over.chain.gz 02-Jun-2009 11:25 17M
ornAna1ToEquCab2.over.chain.gz 02-Jul-2009 11:33 10M
ornAna1ToAnoCar2.over.chain.gz 27-Apr-2011 08:39 6.2M
ornAna1ToBosTau6.over.chain.gz 24-May-2011 13:50 16M
ornAna1ToBosTau7.over.chain.gz 20-Jan-2012 10:01 16M
ornAna1ToMm10.over.chain.gz 02-Apr-2012 09:56 11M
ornAna1ToOrnAna2.over.chain.gz 15-Jun-2015 15:03 4.5M
md5sum.txt 10-Feb-2016 10:15 1.1K