Medaka 5-way conservation track, phastCons 5-Way raw data scores The chromosome data values are in the files: chr*.data.txt.gz The scaffolds and ultracontig data values are in the files: file_*.data.txt.gz The tree models used with the phastCons operation are in the files: 5way.conserved.mod and 5way.non-conserved.mod The format of these files are fixedStep wiggle files. see also: http://genome.ucsc.edu/goldenPath/help/wiggle.html A data section is introduced in each file with a line declaring the chromosome, the starting position, and the span. For example, chrM.data.gz begins: fixedStep chrom=chrM start=1 step=1 0.970 0.990 0.995 0.997 0.997 ... etc ... Following the fixedStep line are data values. They start at the position specified by the 'start=N' value on the fixedStep line. In this example, the first value 0.860 is at the first nucleotide of chrM, the next value 0.917 is at the second nucleotide of chrM. The 'step=1' specifies that each value spans a single nucleotide. There can be numerous fixedStep declarations in each file. For nucleotide positions not covered by the data specified, there are no data values. These raw data values are compressed into single byte representations when loaded into the database for the genome browser display. The compression results in some loss of precision. This is an acceptable trade-off because the genome browser display is a large compression of data into the simple bar graph even if it hadn't been compressed before display. This means that values obtained from the data base via the Table Browser function of the genome browser, will be different than these raw data values.
Name Last modified Size Description
Parent Directory - 5way.conserved.mod 05-Sep-2008 12:00 421 5way.non-conserved.mod 05-Sep-2008 12:00 421 chr1.data.txt.gz 05-Sep-2008 15:21 17M chr2.data.txt.gz 05-Sep-2008 15:21 9.3M chr3.data.txt.gz 05-Sep-2008 15:21 21M chr4.data.txt.gz 05-Sep-2008 15:22 20M chr5.data.txt.gz 05-Sep-2008 15:22 18M chr6.data.txt.gz 05-Sep-2008 15:22 17M chr7.data.txt.gz 05-Sep-2008 15:22 18M chr8.data.txt.gz 05-Sep-2008 15:23 16M chr9.data.txt.gz 05-Sep-2008 15:23 20M chr10.data.txt.gz 05-Sep-2008 15:23 15M chr11.data.txt.gz 05-Sep-2008 15:23 14M chr12.data.txt.gz 05-Sep-2008 15:24 15M chr13.data.txt.gz 05-Sep-2008 15:24 18M chr14.data.txt.gz 05-Sep-2008 15:24 15M chr15.data.txt.gz 05-Sep-2008 15:24 17M chr16.data.txt.gz 05-Sep-2008 15:25 18M chr17.data.txt.gz 05-Sep-2008 15:25 17M chr18.data.txt.gz 05-Sep-2008 15:25 12M chr19.data.txt.gz 05-Sep-2008 15:25 12M chr20.data.txt.gz 05-Sep-2008 15:25 14M chr21.data.txt.gz 05-Sep-2008 15:26 16M chr22.data.txt.gz 05-Sep-2008 15:26 16M chr23.data.txt.gz 05-Sep-2008 15:26 11M chr24.data.txt.gz 05-Sep-2008 15:26 13M chrM.data.txt.gz 05-Sep-2008 15:26 26K file_0.data.txt.gz 08-Sep-2008 09:20 24M file_1.data.txt.gz 08-Sep-2008 09:20 6.2M file_2.data.txt.gz 08-Sep-2008 09:20 3.7M file_3.data.txt.gz 08-Sep-2008 09:20 3.1M file_4.data.txt.gz 08-Sep-2008 09:20 2.0M file_5.data.txt.gz 08-Sep-2008 09:20 1.8M file_6.data.txt.gz 08-Sep-2008 09:20 1.7M file_7.data.txt.gz 08-Sep-2008 09:20 1.5M file_8.data.txt.gz 08-Sep-2008 09:20 1.3M file_9.data.txt.gz 08-Sep-2008 09:20 1.2M file_10.data.txt.gz 08-Sep-2008 09:20 1.1M file_11.data.txt.gz 08-Sep-2008 09:20 1.1M file_12.data.txt.gz 08-Sep-2008 09:20 931K file_13.data.txt.gz 08-Sep-2008 09:20 960K file_14.data.txt.gz 08-Sep-2008 09:20 859K file_15.data.txt.gz 08-Sep-2008 09:20 811K file_16.data.txt.gz 08-Sep-2008 09:20 730K file_17.data.txt.gz 08-Sep-2008 09:20 666K file_18.data.txt.gz 08-Sep-2008 09:20 618K file_19.data.txt.gz 08-Sep-2008 09:20 497K file_20.data.txt.gz 08-Sep-2008 09:20 536K file_21.data.txt.gz 08-Sep-2008 09:20 446K file_22.data.txt.gz 08-Sep-2008 09:20 521K file_23.data.txt.gz 08-Sep-2008 09:20 456K file_24.data.txt.gz 08-Sep-2008 09:20 378K file_25.data.txt.gz 08-Sep-2008 09:20 422K file_26.data.txt.gz 08-Sep-2008 09:20 310K file_27.data.txt.gz 08-Sep-2008 09:20 325K file_28.data.txt.gz 08-Sep-2008 09:20 346K file_29.data.txt.gz 08-Sep-2008 09:20 315K file_30.data.txt.gz 08-Sep-2008 09:20 294K file_31.data.txt.gz 08-Sep-2008 09:20 258K file_32.data.txt.gz 08-Sep-2008 09:20 238K file_33.data.txt.gz 08-Sep-2008 09:20 251K file_34.data.txt.gz 08-Sep-2008 09:20 212K file_35.data.txt.gz 08-Sep-2008 09:20 210K file_36.data.txt.gz 08-Sep-2008 09:20 191K file_37.data.txt.gz 08-Sep-2008 09:20 216K file_38.data.txt.gz 08-Sep-2008 09:20 175K file_39.data.txt.gz 08-Sep-2008 09:20 168K file_40.data.txt.gz 08-Sep-2008 09:20 169K file_41.data.txt.gz 08-Sep-2008 09:20 145K file_42.data.txt.gz 08-Sep-2008 09:20 114K file_43.data.txt.gz 08-Sep-2008 09:20 121K file_44.data.txt.gz 08-Sep-2008 09:20 122K file_45.data.txt.gz 08-Sep-2008 09:20 145K file_46.data.txt.gz 08-Sep-2008 09:21 111K file_47.data.txt.gz 08-Sep-2008 09:21 74K file_48.data.txt.gz 08-Sep-2008 09:21 99K file_49.data.txt.gz 08-Sep-2008 09:21 99K file_50.data.txt.gz 08-Sep-2008 09:21 76K file_51.data.txt.gz 08-Sep-2008 09:21 66K file_52.data.txt.gz 08-Sep-2008 09:21 46K file_53.data.txt.gz 08-Sep-2008 09:21 64K file_54.data.txt.gz 08-Sep-2008 09:21 48K file_55.data.txt.gz 08-Sep-2008 09:21 44K file_56.data.txt.gz 08-Sep-2008 09:21 55K file_57.data.txt.gz 08-Sep-2008 09:21 46K file_58.data.txt.gz 08-Sep-2008 09:21 56K file_59.data.txt.gz 08-Sep-2008 09:21 33K file_60.data.txt.gz 08-Sep-2008 09:21 46K file_61.data.txt.gz 08-Sep-2008 09:21 77K file_62.data.txt.gz 08-Sep-2008 09:21 72K file_63.data.txt.gz 08-Sep-2008 09:21 54K file_64.data.txt.gz 08-Sep-2008 09:21 56K md5sum.txt 08-Sep-2008 14:25 4.8K