This directory contains a dump of the UCSC genome annotation database
for the Jan. 2005 rhesus genome assembled by the Baylor College of Medicine
Human Genome Sequencing Center (rheMac1, BCM HGSC Mmul_0.1). For more
information about this assembly, see the Baylor web page at
http://www.hgsc.bcm.tmc.edu/projects/rmacaque/.
Files included in this directory (updated nightly):
- *.sql files: the MySQL commands used to create the tables. See
http://genome.ucsc.edu/goldenPath/gbdDescriptions.html for
descriptions of the tables.
- *.txt.gz files: the database tables in a tab-delimited format
compressed with gzip.
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If you plan to download a large file or multiple files from this directory,
we recommend you use ftp rather than downloading the files via our website.
To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory
goldenPath/rheMac1/database/. To download multiple files, use the
"mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
Please review the restrictions on the use of the rhesus assembly data at
http://genome.ucsc.edu/goldenPath/credits.html#rhesus_use.
Name Last modified Size Description
Parent Directory -
trackDb_fanhsu.sql 2013-10-01 12:48 1.2K
tableDescriptions.sql 2013-10-01 12:48 403
simpleRepeat.sql 2013-10-01 12:48 1.1K
scaffoldCoords.sql 2013-10-01 12:48 378
rmsk.sql 2013-10-01 12:48 1.1K
quality.sql 2013-10-01 12:48 892
netMm7.sql 2013-10-01 12:48 1.3K
netHg17.sql 2013-10-01 12:48 1.3K
intronEst.sql 2013-10-01 12:48 1.3K
history.sql 2013-10-01 12:48 537
hgFindSpec_fanhsu.sql 2013-10-01 12:48 843
hgFindSpec.sql 2013-10-01 12:48 829
grp.sql 2013-10-01 12:48 362
gold.sql 2013-10-01 12:48 799
gc5Base.sql 2013-10-01 12:48 892
gbDelete_tmp.sql 2013-10-01 12:48 326
gap.sql 2013-10-01 12:48 722
estOrientInfo.sql 2013-10-01 12:48 855
ctgPos2.sql 2013-10-01 12:48 615
chromInfo.sql 2013-10-01 12:48 389
chainMm7Link.sql 2013-10-01 12:48 577
chainMm7.sql 2013-10-01 12:48 878
chainHg17Link.sql 2013-10-01 12:48 579
chainHg17.sql 2013-10-01 12:48 880
all_est.sql 2013-10-01 12:48 1.3K
xenoRefFlat.txt.gz 2006-08-13 18:20 3.0M
xenoRefFlat.sql 2006-08-13 18:20 1.6K
gbCdnaInfo.txt.gz 2006-08-13 18:20 21M
gbCdnaInfo.sql 2006-08-13 18:19 2.4K
refSeqStatus.txt.gz 2006-08-13 18:19 530K
refSeqStatus.sql 2006-08-13 18:19 1.2K
mrnaOrientInfo.txt.gz 2006-08-13 18:19 31K
mrnaOrientInfo.sql 2006-08-13 18:19 1.7K
xenoMrna.txt.gz 2006-08-13 18:19 68M
xenoMrna.sql 2006-08-13 18:18 2.2K
all_mrna.txt.gz 2006-08-13 18:18 105K
all_mrna.sql 2006-08-13 18:18 2.2K
xenoRefGene.txt.gz 2006-08-13 18:18 2.7M
xenoRefGene.sql 2006-08-13 18:18 1.6K
source.txt.gz 2006-08-13 18:18 205K
source.sql 2006-08-13 18:18 1.2K
gbExtFile.txt.gz 2006-08-13 18:18 6.3K
gbExtFile.sql 2006-08-13 18:18 1.2K
refSeqSummary.txt.gz 2006-08-13 18:18 4.0M
refSeqSummary.sql 2006-08-13 18:18 1.3K
mrnaClone.txt.gz 2006-08-13 18:18 6.1M
mrnaClone.sql 2006-08-13 18:18 1.2K
development.txt.gz 2006-08-13 18:18 70K
development.sql 2006-08-13 18:18 1.2K
refLink.txt.gz 2006-08-13 18:18 4.2M
refLink.sql 2006-08-13 18:18 1.6K
gbSeq.txt.gz 2006-08-13 18:17 21M
gbSeq.sql 2006-08-13 18:17 1.6K
xenoRefSeqAli.txt.gz 2006-08-13 18:17 4.8M
xenoRefSeqAli.sql 2006-08-13 18:17 2.2K
library.txt.gz 2006-08-13 18:17 170K
library.sql 2006-08-13 18:17 1.2K
author.txt.gz 2006-08-13 18:17 5.6M
tissue.txt.gz 2006-08-13 18:17 94K
tissue.sql 2006-08-13 18:17 1.2K
author.sql 2006-08-13 18:17 1.2K
description.txt.gz 2006-08-13 18:17 5.3M
organism.txt.gz 2006-08-13 18:17 175K
organism.sql 2006-08-13 18:17 1.2K
gbLoaded.txt.gz 2006-08-13 18:17 20K
gbLoaded.sql 2006-08-13 18:17 1.4K
description.sql 2006-08-13 18:17 1.2K
geneName.txt.gz 2006-08-13 18:17 2.5M
geneName.sql 2006-08-13 18:17 1.2K
keyword.txt.gz 2006-08-13 18:17 767K
keyword.sql 2006-08-13 18:17 1.2K
gbStatus.txt.gz 2006-08-13 18:17 11M
gbStatus.sql 2006-08-13 18:17 1.9K
imageClone.txt.gz 2006-08-13 18:17 931K
imageClone.sql 2006-08-13 18:17 1.3K
productName.txt.gz 2006-08-13 18:16 5.1M
productName.sql 2006-08-13 18:16 1.2K
cds.txt.gz 2006-08-13 18:16 2.3M
cds.sql 2006-08-13 18:16 1.2K
cell.txt.gz 2006-08-06 18:15 91K
cell.sql 2006-08-06 18:15 1.2K
sex.txt.gz 2006-07-30 16:05 1.2K
sex.sql 2006-07-30 16:05 1.2K
trackDb.txt.gz 2006-07-29 07:36 9.1K
trackDb.sql 2006-07-29 07:36 2.0K
gbCdnaInfoNoGi.txt.gz 2006-07-21 10:41 16M
gbCdnaInfoNoGi.sql 2006-07-21 10:40 2.4K
tableDescriptions.txt.gz 2006-02-12 08:36 5.0K
netMm7.txt.gz 2005-12-22 06:11 68M
chainMm7Link.txt.gz 2005-12-22 06:06 385M
chainMm7.txt.gz 2005-12-22 06:01 38M
all_est.txt.gz 2005-11-30 11:19 3.2M
intronEst.txt.gz 2005-11-30 11:18 1.6M
estOrientInfo.txt.gz 2005-11-30 11:18 814K
gbDelete_tmp.txt.gz 2005-09-16 05:05 180K
quality.txt.gz 2005-06-16 04:59 62M
trackDb_fanhsu.txt.gz 2005-05-18 07:02 55K
simpleRepeat.txt.gz 2005-05-18 07:01 15M
scaffoldCoords.txt.gz 2005-05-18 07:01 4.4M
rmsk.txt.gz 2005-05-18 07:00 119M
netHg17.txt.gz 2005-05-18 06:57 36M
history.txt.gz 2005-05-18 06:56 132
hgFindSpec_fanhsu.txt.gz 2005-05-18 06:56 2.3K
hgFindSpec.txt.gz 2005-05-18 06:56 275
grp.txt.gz 2005-05-18 06:56 204
gold.txt.gz 2005-05-18 06:56 6.4M
gc5Base.txt.gz 2005-05-18 06:56 14M
gap.txt.gz 2005-05-18 06:54 2.9M
ctgPos2.txt.gz 2005-05-18 06:54 32
chromInfo.txt.gz 2005-05-18 06:54 878K
chainHg17Link.txt.gz 2005-05-18 06:44 795M
chainHg17.txt.gz 2005-05-18 06:34 168M