This directory contains a dump of the UCSC genome annotation database for the Jan. 2006 rhesus genome assembled by the Baylor College of Medicine Human Genome Sequencing Center (rheMac2, BCM HGSC v.1.0, Mmul_051212). For more information about this assembly, see the Baylor web page at http://www.hgsc.bcm.tmc.edu/projects/rmacaque/. Files included in this directory (updated nightly): - *.sql files: the MySQL commands used to create the tables. To see descriptions of the tables underlying Genome Browser annotation tracks, select the table in the Table Browser: http://genome.ucsc.edu/cgi-bin/hgTables?db=rheMac2 and click the "describe table schema" button. There is also a "view table schema" link on the configuration page for each track. - *.txt.gz files: the database tables in a tab-delimited format compressed with gzip. ---------------------------------------------------------------- If you plan to download a large file or multiple files from this directory, we recommend you use ftp rather than downloading the files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the directory goldenPath/rheMac2/database/. To download multiple files, use the "mget" command: mget <filename1> <filename2> ... - or - mget -a (to download all the files in the directory) Please review the restrictions on the use of the rhesus assembly data at http://www.genome.ucsc/goldenPath/credits.html#rhesus_use.
Name Last modified Size Description
Parent Directory - all_est.sql 2012-11-04 18:18 2.1K all_est.txt.gz 2012-11-04 18:18 3.6M all_mrna.sql 2016-02-08 10:47 2.1K all_mrna.txt.gz 2016-02-08 10:47 18M author.sql 2016-02-21 22:56 1.4K author.txt.gz 2016-02-21 22:56 16M bigFiles.sql 2024-10-13 03:20 1.4K bigFiles.txt.gz 2024-10-13 03:20 167 cds.sql 2016-02-21 22:50 1.4K cds.txt.gz 2016-02-21 22:50 4.3M cell.sql 2016-02-15 00:05 1.4K cell.txt.gz 2016-02-15 00:05 106K chainCalJac3.sql 2010-06-06 20:07 1.6K chainCalJac3.txt.gz 2010-06-06 20:07 9.8M chainCalJac3Link.sql 2010-06-06 20:06 1.5K chainCalJac3Link.txt.gz 2010-06-06 20:06 217M chainGorGor3.sql 2011-11-27 14:19 1.6K chainGorGor3.txt.gz 2011-11-27 14:19 17M chainGorGor3Link.sql 2011-11-27 14:19 1.5K chainGorGor3Link.txt.gz 2011-11-27 14:19 155M chainHg19.sql 2009-07-26 10:17 1.8K chainHg19.txt.gz 2009-07-26 10:17 9.9M chainHg19Link.sql 2009-07-26 10:16 1.5K chainHg19Link.txt.gz 2009-07-26 10:16 162M chainMonDom5.sql 2009-09-27 12:21 1.6K chainMonDom5.txt.gz 2009-09-27 12:22 238M chainMonDom5Link.sql 2009-09-27 12:16 1.5K chainMonDom5Link.txt.gz 2009-09-27 12:17 789M chainPanTro3.sql 2011-05-24 01:19 1.6K chainPanTro3.txt.gz 2011-05-24 01:19 11M chainPanTro3Link.sql 2011-05-24 01:14 1.5K chainPanTro3Link.txt.gz 2011-05-24 01:15 160M chr1_chainMm9.sql 2007-09-12 18:31 1.6K chr1_chainMm9.txt.gz 2007-09-12 18:32 14M chr1_chainMm9Link.sql 2007-09-12 18:32 1.4K chr1_chainMm9Link.txt.gz 2007-09-12 18:33 83M chr1_chainPonAbe2.sql 2008-03-09 06:26 1.7K chr1_chainPonAbe2.txt.gz 2008-03-09 06:26 9.0M chr1_chainPonAbe2Link.sql 2008-03-09 06:26 1.4K chr1_chainPonAbe2Link.txt.gz 2008-03-09 06:27 48M chr1_chainRn4.sql 2006-06-21 08:35 1.6K chr1_chainRn4.txt.gz 2006-06-21 08:35 8.5M chr1_chainRn4Link.sql 2006-06-21 08:35 1.4K chr1_chainRn4Link.txt.gz 2006-06-21 08:36 50M chr2_chainMm9.sql 2007-09-12 18:35 1.6K chr2_chainMm9.txt.gz 2007-09-12 18:35 9.6M chr2_chainMm9Link.sql 2007-09-12 18:35 1.4K chr2_chainMm9Link.txt.gz 2007-09-12 18:36 64M chr2_chainPonAbe2.sql 2008-03-09 06:28 1.7K chr2_chainPonAbe2.txt.gz 2008-03-09 06:28 7.0M chr2_chainPonAbe2Link.sql 2008-03-09 06:28 1.4K chr2_chainPonAbe2Link.txt.gz 2008-03-09 06:29 31M chr2_chainRn4.sql 2006-06-21 08:37 1.6K chr2_chainRn4.txt.gz 2006-06-21 08:37 4.8M chr2_chainRn4Link.sql 2006-06-21 08:37 1.4K chr2_chainRn4Link.txt.gz 2006-06-21 08:37 34M chr3_chainMm9.sql 2007-09-12 18:37 1.6K chr3_chainMm9.txt.gz 2007-09-12 18:37 11M chr3_chainMm9Link.sql 2007-09-12 18:37 1.4K chr3_chainMm9Link.txt.gz 2007-09-12 18:38 65M chr3_chainPonAbe2.sql 2008-03-09 06:29 1.7K chr3_chainPonAbe2.txt.gz 2008-03-09 06:29 11M chr3_chainPonAbe2Link.sql 2008-03-09 06:29 1.4K chr3_chainPonAbe2Link.txt.gz 2008-03-09 06:30 49M chr3_chainRn4.sql 2006-06-21 08:38 1.6K chr3_chainRn4.txt.gz 2006-06-21 08:38 5.7M chr3_chainRn4Link.sql 2006-06-21 08:38 1.4K chr3_chainRn4Link.txt.gz 2006-06-21 08:38 34M chr4_chainMm9.sql 2007-09-12 18:39 1.6K chr4_chainMm9.txt.gz 2007-09-12 18:39 9.2M chr4_chainMm9Link.sql 2007-09-12 18:39 1.4K chr4_chainMm9Link.txt.gz 2007-09-12 18:40 58M chr4_chainPonAbe2.sql 2008-03-09 06:31 1.7K chr4_chainPonAbe2.txt.gz 2008-03-09 06:31 6.6M chr4_chainPonAbe2Link.sql 2008-03-09 06:31 1.4K chr4_chainPonAbe2Link.txt.gz 2008-03-09 06:31 30M chr4_chainRn4.sql 2006-06-21 08:39 1.6K chr4_chainRn4.txt.gz 2006-06-21 08:39 5.7M chr4_chainRn4Link.sql 2006-06-21 08:39 1.4K chr4_chainRn4Link.txt.gz 2006-06-21 08:39 33M chr5_chainMm9.sql 2007-09-12 18:41 1.6K chr5_chainMm9.txt.gz 2007-09-12 18:41 8.6M chr5_chainMm9Link.sql 2007-09-12 18:41 1.4K chr5_chainMm9Link.txt.gz 2007-09-12 18:42 59M chr5_chainPonAbe2.sql 2008-03-09 06:32 1.7K chr5_chainPonAbe2.txt.gz 2008-03-09 06:32 3.4M chr5_chainPonAbe2Link.sql 2008-03-09 06:32 1.4K chr5_chainPonAbe2Link.txt.gz 2008-03-09 06:32 24M chr5_chainRn4.sql 2006-06-21 08:40 1.6K chr5_chainRn4.txt.gz 2006-06-21 08:40 4.0M chr5_chainRn4Link.sql 2006-06-21 08:40 1.4K chr5_chainRn4Link.txt.gz 2006-06-21 08:40 28M chr6_chainMm9.sql 2007-09-12 18:43 1.6K chr6_chainMm9.txt.gz 2007-09-12 18:43 9.0M chr6_chainMm9Link.sql 2007-09-12 18:43 1.4K chr6_chainMm9Link.txt.gz 2007-09-12 18:44 61M chr6_chainPonAbe2.sql 2008-03-09 06:32 1.7K chr6_chainPonAbe2.txt.gz 2008-03-09 06:32 6.5M chr6_chainPonAbe2Link.sql 2008-03-09 06:32 1.4K chr6_chainPonAbe2Link.txt.gz 2008-03-09 06:33 31M chr6_chainRn4.sql 2006-06-21 08:40 1.6K chr6_chainRn4.txt.gz 2006-06-21 08:41 4.4M chr6_chainRn4Link.sql 2006-06-21 08:41 1.4K chr6_chainRn4Link.txt.gz 2006-06-21 08:41 30M chr7_chainMm9.sql 2007-09-12 18:45 1.6K chr7_chainMm9.txt.gz 2007-09-12 18:45 9.1M chr7_chainMm9Link.sql 2007-09-12 18:45 1.4K chr7_chainMm9Link.txt.gz 2007-09-12 18:46 60M chr7_chainPonAbe2.sql 2008-03-09 06:33 1.7K chr7_chainPonAbe2.txt.gz 2008-03-09 06:33 5.4M chr7_chainPonAbe2Link.sql 2008-03-09 06:33 1.4K chr7_chainPonAbe2Link.txt.gz 2008-03-09 06:34 31M chr7_chainRn4.sql 2006-06-21 08:41 1.6K chr7_chainRn4.txt.gz 2006-06-21 08:41 5.7M chr7_chainRn4Link.sql 2006-06-21 08:41 1.4K chr7_chainRn4Link.txt.gz 2006-06-21 08:42 36M chr8_chainMm9.sql 2007-09-12 18:47 1.6K chr8_chainMm9.txt.gz 2007-09-12 18:47 7.7M chr8_chainMm9Link.sql 2007-09-12 18:47 1.4K chr8_chainMm9Link.txt.gz 2007-09-12 18:48 47M chr8_chainPonAbe2.sql 2008-03-09 06:34 1.7K chr8_chainPonAbe2.txt.gz 2008-03-09 06:34 6.4M chr8_chainPonAbe2Link.sql 2008-03-09 06:34 1.4K chr8_chainPonAbe2Link.txt.gz 2008-03-09 06:35 26M chr8_chainRn4.sql 2006-06-21 08:42 1.6K chr8_chainRn4.txt.gz 2006-06-21 08:43 4.0M chr8_chainRn4Link.sql 2006-06-21 08:43 1.4K chr8_chainRn4Link.txt.gz 2006-06-21 08:43 24M chr9_chainMm9.sql 2007-09-12 18:48 1.6K chr9_chainMm9.txt.gz 2007-09-12 18:48 6.8M chr9_chainMm9Link.sql 2007-09-12 18:49 1.4K chr9_chainMm9Link.txt.gz 2007-09-12 18:49 45M chr9_chainPonAbe2.sql 2008-03-09 06:35 1.7K chr9_chainPonAbe2.txt.gz 2008-03-09 06:35 5.4M chr9_chainPonAbe2Link.sql 2008-03-09 06:35 1.4K chr9_chainPonAbe2Link.txt.gz 2008-03-09 06:35 27M chr9_chainRn4.sql 2006-06-21 08:43 1.6K chr9_chainRn4.txt.gz 2006-06-21 08:43 3.7M chr9_chainRn4Link.sql 2006-06-21 08:43 1.4K chr9_chainRn4Link.txt.gz 2006-06-21 08:44 23M chr10_chainMm9.sql 2007-09-12 18:55 1.7K chr10_chainMm9.txt.gz 2007-09-12 18:55 4.3M chr10_chainMm9Link.sql 2007-09-12 18:20 1.4K chr10_chainMm9Link.txt.gz 2007-09-12 18:21 26M chr10_chainPonAbe2.sql 2008-03-09 06:17 1.7K chr10_chainPonAbe2.txt.gz 2008-03-09 06:17 3.8M chr10_chainPonAbe2Link.sql 2008-03-09 06:17 1.4K chr10_chainPonAbe2Link.txt.gz 2008-03-09 06:17 19M chr10_chainRn4.sql 2006-06-21 08:29 1.6K chr10_chainRn4.txt.gz 2006-06-21 08:29 2.8M chr10_chainRn4Link.sql 2006-06-21 08:29 1.4K chr10_chainRn4Link.txt.gz 2006-06-21 08:29 16M chr11_chainMm9.sql 2007-09-12 18:21 1.7K chr11_chainMm9.txt.gz 2007-09-12 18:21 7.5M chr11_chainMm9Link.sql 2007-09-12 18:21 1.4K chr11_chainMm9Link.txt.gz 2007-09-12 18:22 46M chr11_chainPonAbe2.sql 2008-03-09 06:17 1.7K chr11_chainPonAbe2.txt.gz 2008-03-09 06:17 4.9M chr11_chainPonAbe2Link.sql 2008-03-09 06:17 1.4K chr11_chainPonAbe2Link.txt.gz 2008-03-09 06:18 25M chr11_chainRn4.sql 2006-06-21 08:29 1.6K chr11_chainRn4.txt.gz 2006-06-21 08:29 4.7M chr11_chainRn4Link.sql 2006-06-21 08:29 1.4K chr11_chainRn4Link.txt.gz 2006-06-21 08:29 28M chr12_chainMm9.sql 2007-09-12 18:22 1.7K chr12_chainMm9.txt.gz 2007-09-12 18:22 4.9M chr12_chainMm9Link.sql 2007-09-12 18:22 1.4K chr12_chainMm9Link.txt.gz 2007-09-12 18:23 35M chr12_chainPonAbe2.sql 2008-03-09 06:18 1.7K chr12_chainPonAbe2.txt.gz 2008-03-09 06:18 1.8M chr12_chainPonAbe2Link.sql 2008-03-09 06:18 1.4K chr12_chainPonAbe2Link.txt.gz 2008-03-09 06:18 13M chr12_chainRn4.sql 2006-06-21 08:30 1.6K chr12_chainRn4.txt.gz 2006-06-21 08:30 2.7M chr12_chainRn4Link.sql 2006-06-21 08:30 1.4K chr12_chainRn4Link.txt.gz 2006-06-21 08:30 19M chr13_chainMm9.sql 2007-09-12 18:23 1.7K chr13_chainMm9.txt.gz 2007-09-12 18:23 6.9M chr13_chainMm9Link.sql 2007-09-12 18:23 1.4K chr13_chainMm9Link.txt.gz 2007-09-12 18:24 45M chr13_chainPonAbe2.sql 2008-03-09 06:18 1.7K chr13_chainPonAbe2.txt.gz 2008-03-09 06:18 3.7M chr13_chainPonAbe2Link.sql 2008-03-09 06:18 1.4K chr13_chainPonAbe2Link.txt.gz 2008-03-09 06:19 21M chr13_chainRn4.sql 2006-06-21 08:30 1.6K chr13_chainRn4.txt.gz 2006-06-21 08:30 3.8M chr13_chainRn4Link.sql 2006-06-21 08:30 1.4K chr13_chainRn4Link.txt.gz 2006-06-21 08:31 24M chr14_chainMm9.sql 2007-09-12 18:24 1.7K chr14_chainMm9.txt.gz 2007-09-12 18:24 9.6M chr14_chainMm9Link.sql 2007-09-12 18:25 1.4K chr14_chainMm9Link.txt.gz 2007-09-12 18:25 59M chr14_chainPonAbe2.sql 2008-03-09 06:19 1.7K chr14_chainPonAbe2.txt.gz 2008-03-09 06:19 5.7M chr14_chainPonAbe2Link.sql 2008-03-09 06:19 1.4K chr14_chainPonAbe2Link.txt.gz 2008-03-09 06:19 29M chr14_chainRn4.sql 2006-06-21 08:31 1.6K chr14_chainRn4.txt.gz 2006-06-21 08:31 7.4M chr14_chainRn4Link.sql 2006-06-21 08:31 1.4K chr14_chainRn4Link.txt.gz 2006-06-21 08:32 43M chr15_chainMm9.sql 2007-09-12 18:26 1.7K chr15_chainMm9.txt.gz 2007-09-12 18:26 6.4M chr15_chainMm9Link.sql 2007-09-12 18:26 1.4K chr15_chainMm9Link.txt.gz 2007-09-12 18:27 41M chr15_chainPonAbe2.sql 2008-03-09 06:20 1.7K chr15_chainPonAbe2.txt.gz 2008-03-09 06:20 3.8M chr15_chainPonAbe2Link.sql 2008-03-09 06:20 1.4K chr15_chainPonAbe2Link.txt.gz 2008-03-09 06:20 20M chr15_chainRn4.sql 2006-06-21 08:32 1.6K chr15_chainRn4.txt.gz 2006-06-21 08:32 3.7M chr15_chainRn4Link.sql 2006-06-21 08:32 1.4K chr15_chainRn4Link.txt.gz 2006-06-21 08:33 23M chr16_chainMm9.sql 2007-09-12 18:27 1.7K chr16_chainMm9.txt.gz 2007-09-12 18:27 4.4M chr16_chainMm9Link.sql 2007-09-12 18:27 1.4K chr16_chainMm9Link.txt.gz 2007-09-12 18:28 22M chr16_chainPonAbe2.sql 2008-03-09 06:20 1.7K chr16_chainPonAbe2.txt.gz 2008-03-09 06:20 4.8M chr16_chainPonAbe2Link.sql 2008-03-09 06:20 1.4K chr16_chainPonAbe2Link.txt.gz 2008-03-09 06:21 18M chr16_chainRn4.sql 2006-06-21 08:33 1.6K chr16_chainRn4.txt.gz 2006-06-21 08:33 3.2M chr16_chainRn4Link.sql 2006-06-21 08:33 1.4K chr16_chainRn4Link.txt.gz 2006-06-21 08:33 16M chr17_chainMm9.sql 2007-09-12 18:28 1.7K chr17_chainMm9.txt.gz 2007-09-12 18:28 4.2M chr17_chainMm9Link.sql 2007-09-12 18:28 1.4K chr17_chainMm9Link.txt.gz 2007-09-12 18:28 29M chr17_chainPonAbe2.sql 2008-03-09 06:21 1.7K chr17_chainPonAbe2.txt.gz 2008-03-09 06:21 1.5M chr17_chainPonAbe2Link.sql 2008-03-09 06:21 1.4K chr17_chainPonAbe2Link.txt.gz 2008-03-09 06:21 12M chr17_chainRn4.sql 2006-06-21 08:33 1.6K chr17_chainRn4.txt.gz 2006-06-21 08:33 2.2M chr17_chainRn4Link.sql 2006-06-21 08:33 1.4K chr17_chainRn4Link.txt.gz 2006-06-21 08:34 14M chr18_chainMm9.sql 2007-09-12 18:29 1.7K chr18_chainMm9.txt.gz 2007-09-12 18:29 3.5M chr18_chainMm9Link.sql 2007-09-12 18:29 1.4K chr18_chainMm9Link.txt.gz 2007-09-12 18:29 23M chr18_chainPonAbe2.sql 2008-03-09 06:21 1.7K chr18_chainPonAbe2.txt.gz 2008-03-09 06:21 1.7M chr18_chainPonAbe2Link.sql 2008-03-09 06:21 1.4K chr18_chainPonAbe2Link.txt.gz 2008-03-09 06:21 9.8M chr18_chainRn4.sql 2006-06-21 08:34 1.6K chr18_chainRn4.txt.gz 2006-06-21 08:34 2.0M chr18_chainRn4Link.sql 2006-06-21 08:34 1.4K chr18_chainRn4Link.txt.gz 2006-06-21 08:34 12M chr19_chainMm9.sql 2007-09-12 18:29 1.7K chr19_chainMm9.txt.gz 2007-09-12 18:30 18M chr19_chainMm9Link.sql 2007-09-12 18:30 1.4K chr19_chainMm9Link.txt.gz 2007-09-12 18:31 60M chr19_chainPonAbe2.sql 2008-03-09 06:21 1.7K chr19_chainPonAbe2.txt.gz 2008-03-09 06:22 43M chr19_chainPonAbe2Link.sql 2008-03-09 06:23 1.4K chr19_chainPonAbe2Link.txt.gz 2008-03-09 06:24 113M chr19_chainRn4.sql 2006-06-21 08:34 1.6K chr19_chainRn4.txt.gz 2006-06-21 08:34 7.1M chr19_chainRn4Link.sql 2006-06-21 08:34 1.4K chr19_chainRn4Link.txt.gz 2006-06-21 08:35 23M chr20_chainMm9.sql 2007-09-12 18:34 1.7K chr20_chainMm9.txt.gz 2007-09-12 18:34 4.0M chr20_chainMm9Link.sql 2007-09-12 18:34 1.4K chr20_chainMm9Link.txt.gz 2007-09-12 18:35 22M chr20_chainPonAbe2.sql 2008-03-09 06:27 1.7K chr20_chainPonAbe2.txt.gz 2008-03-09 06:28 4.8M chr20_chainPonAbe2Link.sql 2008-03-09 06:28 1.4K chr20_chainPonAbe2Link.txt.gz 2008-03-09 06:28 19M chr20_chainRn4.sql 2006-06-21 08:36 1.6K chr20_chainRn4.txt.gz 2006-06-21 08:36 2.3M chr20_chainRn4Link.sql 2006-06-21 08:36 1.4K chr20_chainRn4Link.txt.gz 2006-06-21 08:37 13M chrUr_chainMm9.sql 2007-09-12 18:50 1.7K chrUr_chainMm9.txt.gz 2007-09-12 18:50 186K chrUr_chainMm9Link.sql 2007-09-12 18:50 1.4K chrUr_chainMm9Link.txt.gz 2007-09-12 18:50 853K chrUr_chainPonAbe2.sql 2008-03-09 06:36 1.7K chrUr_chainPonAbe2.txt.gz 2008-03-09 06:36 484K chrUr_chainPonAbe2Link.sql 2008-03-09 06:36 1.4K chrUr_chainPonAbe2Link.txt.gz 2008-03-09 06:36 1.5M chrUr_chainRn4.sql 2006-06-21 08:44 1.6K chrUr_chainRn4.txt.gz 2006-06-21 08:44 225K chrUr_chainRn4Link.sql 2006-06-21 08:44 1.4K chrUr_chainRn4Link.txt.gz 2006-06-21 08:44 1.0M chrX_chainMm9.sql 2007-09-12 18:50 1.6K chrX_chainMm9.txt.gz 2007-09-12 18:50 10M chrX_chainMm9Link.sql 2007-09-12 18:50 1.4K chrX_chainMm9Link.txt.gz 2007-09-12 18:51 62M chrX_chainPonAbe2.sql 2008-03-09 06:36 1.7K chrX_chainPonAbe2.txt.gz 2008-03-09 06:36 6.2M chrX_chainPonAbe2Link.sql 2008-03-09 06:36 1.4K chrX_chainPonAbe2Link.txt.gz 2008-03-09 06:36 29M chrX_chainRn4.sql 2006-06-21 08:44 1.6K chrX_chainRn4.txt.gz 2006-06-21 08:44 3.7M chrX_chainRn4Link.sql 2006-06-21 08:44 1.4K chrX_chainRn4Link.txt.gz 2006-06-21 08:44 21M chromInfo.sql 2013-10-01 12:48 389 chromInfo.txt.gz 2006-02-08 17:43 239 cpgIslandExt.sql 2006-09-14 10:47 1.5K cpgIslandExt.txt.gz 2006-09-14 10:47 498K cpgIslandExtUnmasked.sql 2014-06-01 19:12 1.7K cpgIslandExtUnmasked.txt.gz 2014-06-01 19:12 1.5M ctgPos.sql 2013-10-01 12:48 577 ctgPos.txt.gz 2006-02-18 06:03 2.4M description.sql 2016-02-21 22:55 1.4K description.txt.gz 2016-02-21 22:55 19M development.sql 2016-02-15 00:03 1.4K development.txt.gz 2016-02-15 00:03 86K ensGene.sql 2015-09-14 09:04 1.9K ensGene.txt.gz 2015-09-14 09:04 2.8M ensGtp.sql 2015-09-14 08:58 1.4K ensGtp.txt.gz 2015-09-14 08:58 443K ensPep.sql 2015-09-14 08:58 1.3K ensPep.txt.gz 2015-09-14 08:58 7.6M ensemblSource.sql 2015-09-14 09:04 1.4K 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