This directory contains the data files required as input to
the liftOver utility. This tool -- which requires a Linux
platform -- allows the mass conversion of coordinates from
one assembly to another. The executable file for the utility can
be downloaded from http://hgdownload.cse.ucsc.edu/admin/exe/
The file names reflect the assembly conversion data contained within
in the format <db1>To<db2>.over.chain.gz. For example, a file named
hg15Tohg16.zip file contains the liftOver data needed to convert hg15
(Human Build 33) coordinates to hg16 (Human Build 34). If no file is
available for the assembly in which you're interested, please send a
request to the genome mailing list (genome@soe.ucsc.edu) and we will
attempt to provide you with one.
To download a large file or multiple files from this directory,
we recommend that you use ftp rather than downloading the files via our
website. To do so, ftp to hgdownload.cse.ucsc.edu, then go to the
appropriate goldenPath/<assembly>/liftOver directory. To download multiple
files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
-------------------------------------------------------
Please refer to the credits page
(http://genome.ucsc.edu/goldenPath/credits.html) for guidelines and
restrictions regarding data use for these assemblies.
Name Last modified Size Description
Parent Directory -
rheMac2ToHg18.over.chain.gz 03-Feb-2006 10:13 37M
rheMac2ToMm8.over.chain.gz 20-Feb-2006 22:22 64M
rheMac2ToHg17.over.chain.gz 22-Mar-2006 11:41 36M
rheMac2ToRn4.over.chain.gz 23-Mar-2006 09:16 77M
rheMac2ToPanTro2.over.chain.gz 30-Mar-2006 15:04 37M
rheMac2ToMm9.over.chain.gz 07-Sep-2007 10:41 86M
rheMac2ToCalJac1.over.chain.gz 17-Nov-2007 21:05 59M
rheMac2ToPonAbe2.over.chain.gz 18-Nov-2007 03:43 39M
rheMac2ToMonDom5.over.chain.gz 02-Mar-2009 22:39 23M
rheMac2ToHg19.over.chain.gz 02-Jun-2009 11:20 33M
rheMac2ToCalJac3.over.chain.gz 11-Feb-2010 18:31 48M
rheMac2ToPanTro3.over.chain.gz 07-Mar-2011 09:51 33M
rheMac2ToGorGor3.over.chain.gz 22-Oct-2011 17:48 32M
rheMac2ToRheMac3.over.chain.gz 24-Jul-2012 16:14 26M
rheMac2ToPapAnu2.over.chain.gz 12-Dec-2014 02:37 14M
md5sum.txt 05-Jan-2015 15:37 1.2K
rheMac2ToRheMac8.over.chain.gz 06-Feb-2016 14:00 3.7M