This directory contains the assembled sequence for the June 2003
update of the rat genome (rn3, Jun. 2003) in separate files for
each chromosome in a zipped Fasta format. This assembly was
provided by the Rat Genome Sequencing Consortium. It was produced
at the Baylor College of Medicine. For more information on the rat
genome, see the Rat Genome Project website for the Baylor College of
Medicine Human Genome Sequencing Center at http://www.hgsc.bcm.tmc.edu/.
Files included in this directory:
- chr*.fa.zip: compressed FASTA sequence of each chromosome.
Repeats from RepeatMasker and Tandem Repeats Finder (with period
of 12 or less) are shown in lower case; non-repeating sequence is
shown in upper case.
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If you plan to download a large file or multiple files from this
directory, we recommend that you use ftp rather than downloading the
files via our website. To do so, ftp to hgdownload.cse.ucsc.edu, then
go to the directory goldenPath/rnJun2003/chromosomes. To download
multiple files, use the "mget" command:
mget <filename1> <filename2> ...
- or -
mget -a (to download all the files in the directory)
These data are made available before scientific publication with the
following understanding:
1. The data may be freely downloaded, used in analyses, and repackaged
in databases.
2. Users are free to use the data in scientific papers analyzing
particular genes and regions if the providers of this data (the Rat
Genome Sequencing Consortium) are properly acknowledged.
3. The Centers producing the data reserve the right to publish the
initial large-scale analyses of the dataset, including large-scale
identification of regions of evolutionary conservation and large-scale
genomic assembly. Large-scale refers to regions with size on the order
of a chromosome (that is, 30 Mb or more).
4. This is in accordance with, and with the understandings in the Fort
Lauderdale meeting discussing Community Resource Projects (see
http://www.wellcome.ac.uk/en/1/awtpubrepdat.html) and the resulting
NHGRI policy statement
(http://www.genome.gov/page.cfm?pageID=10506537).
5. Any redistribution of the data should carry this notice.
Name Last modified Size Description
Parent Directory -
conditions_for_use.txt 03-Jul-2003 08:36 1.0K
chrX_random.fa.zip 03-Jul-2003 11:36 489K
chrX.fa.zip 03-Jul-2003 11:35 45M
chrUn_random.fa.zip 03-Jul-2003 11:48 1.8M
chrUn.fa.zip 03-Jul-2003 11:48 17M
chr20_random.fa.zip 03-Jul-2003 11:48 162K
chr20.fa.zip 03-Jul-2003 11:47 16M
chr19_random.fa.zip 03-Jul-2003 11:48 271K
chr19.fa.zip 03-Jul-2003 11:46 17M
chr18_random.fa.zip 03-Jul-2003 11:48 148K
chr18.fa.zip 03-Jul-2003 11:46 25M
chr17_random.fa.zip 03-Jul-2003 11:48 160K
chr17.fa.zip 03-Jul-2003 11:45 28M
chr16_random.fa.zip 03-Jul-2003 11:48 377K
chr16.fa.zip 03-Jul-2003 11:43 26M
chr15_random.fa.zip 03-Jul-2003 11:48 446K
chr15.fa.zip 03-Jul-2003 11:42 31M
chr14_random.fa.zip 03-Jul-2003 11:48 495K
chr14.fa.zip 03-Jul-2003 11:41 32M
chr13_random.fa.zip 03-Jul-2003 11:48 145K
chr13.fa.zip 03-Jul-2003 11:40 32M
chr12_random.fa.zip 03-Jul-2003 11:48 216K
chr12.fa.zip 03-Jul-2003 11:39 13M
chr11_random.fa.zip 03-Jul-2003 11:48 370K
chr11.fa.zip 03-Jul-2003 11:38 26M
chr10_random.fa.zip 03-Jul-2003 11:48 235K
chr10.fa.zip 03-Jul-2003 11:37 32M
chr9_random.fa.zip 03-Jul-2003 11:36 316K
chr9.fa.zip 03-Jul-2003 11:34 33M
chr8_random.fa.zip 03-Jul-2003 11:36 243K
chr8.fa.zip 03-Jul-2003 11:32 37M
chr7_random.fa.zip 03-Jul-2003 11:36 325K
chr7.fa.zip 03-Jul-2003 11:31 41M
chr6_random.fa.zip 03-Jul-2003 11:36 495K
chr6.fa.zip 03-Jul-2003 11:29 42M
chr5_random.fa.zip 03-Jul-2003 11:36 570K
chr5.fa.zip 03-Jul-2003 11:28 50M
chr4_random.fa.zip 03-Jul-2003 11:36 564K
chr4.fa.zip 03-Jul-2003 11:26 54M
chr3_random.fa.zip 03-Jul-2003 11:36 477K
chr3.fa.zip 03-Jul-2003 11:23 50M
chr2_random.fa.zip 03-Jul-2003 11:36 1.2M
chr2.fa.zip 03-Jul-2003 11:21 74M
chr1_random.fa.zip 03-Jul-2003 11:36 1.0M
chr1.fa.zip 03-Jul-2003 11:18 76M