This directory contains a dump of the UCSC genome annotation database for the
    Jan. 2020 (ASM985889v3/wuhCor1) assembly of the wuhan seafood market pneumonia virus genome
    (wuhCor1, 2019-nCoV) .

The annotations were generated by UCSC and collaborators worldwide.

For more information about this assembly, please note the NCBI resources:
    https://www.ncbi.nlm.nih.gov/genome/n/a
    https://www.ncbi.nlm.nih.gov/genome/assembly/15851418
    https://www.ncbi.nlm.nih.gov/bioproject/485481
    https://www.ncbi.nlm.nih.gov/biosample/n/a

Files included in this directory (updated nightly):

  - *.sql files:  the MySQL commands used to create the tables

  - *.txt.gz files: the database tables in a tab-delimited format
    compressed with gzip.

To see descriptions of the tables underlying Genome Browser annotation
tracks, select the table in the Table Browser:
  http://genome.ucsc.edu/cgi-bin/hgTables?db=wuhCor1
and click the "describe table schema" button.  There is also a "view
table schema" link on the configuration page for each track.

---------------------------------------------------------------
If you plan to download a large file or multiple files from this
directory, we recommend you use ftp rather than downloading the files
via our website. To do so, ftp to hgdownload.soe.ucsc.edu, then go to
the directory goldenPath/wuhCor1/database/. To download multiple
files, use the "mget" command:

    mget <filename1> <filename2> ...
    - or -
    mget -a (to download all the files in the directory)

Alternate methods to ftp access.

Using an rsync command to download the entire directory:
    rsync -avzP rsync://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/database/ .
For a single file, e.g. gc5Base.txt.gz
    rsync -avzP 
        rsync://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/database/gc5Base.txt.gz .

Or with wget, all files:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/database/*'
With wget, a single file:
    wget --timestamping 
        'ftp://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/database/gc5Base.txt.gz' 
        -O gc5Base.txt.gz

To uncompress the *.txt.gz files:
    gunzip <table>.txt.gz
The tables can be loaded directly from the .txt.gz compressed file.
It is not necessary to uncompress them to load into a database,
as shown in the example below.

To load one of the tables directly into your local mirror database,
for example the table chromInfo:
## create table from the sql definition
$ hgsql wuhCor1 < chromInfo.sql
## load data from the txt.gz file
$ zcat chromInfo.txt.gz | hgsql wuhCor1 --local-infile=1 
        -e 'LOAD DATA LOCAL INFILE "/dev/stdin" INTO TABLE chromInfo;'

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GenBank Data Usage

The GenBank database is designed to provide and encourage access within
the scientific community to the most up to date and comprehensive DNA
sequence information. Therefore, NCBI places no restrictions on the use
or distribution of the GenBank data. However, some submitters may claim
patent, copyright, or other intellectual property rights in all or a
portion of the data they have submitted. NCBI is not in a position to
assess the validity of such claims, and therefore cannot provide comment
or unrestricted permission concerning the use, copying, or distribution
of the information contained in GenBank.
-----------------------------------------------------------------------------
All the files and tables in this directory are freely usable for any purpose.

      Name                                 Last modified      Size  Description
Parent Directory - windowmaskerSdust.txt.gz 2020-01-29 13:21 345 windowmaskerSdust.sql 2020-01-29 13:21 1.5K ucscToRefSeq.txt.gz 2020-01-29 12:01 63 ucscToRefSeq.sql 2020-01-29 12:01 1.4K ucscToINSDC.txt.gz 2020-01-29 12:01 67 ucscToINSDC.sql 2020-01-29 12:01 1.4K trackDb.txt.gz 2021-11-12 09:56 140K trackDb.sql 2021-11-12 09:56 2.1K tableList.txt.gz 2021-11-28 03:03 2.3K tableList.sql 2021-11-28 03:03 1.6K tableDescriptions.txt.gz 2021-04-20 06:33 4.7K tableDescriptions.sql 2021-04-20 06:33 1.4K strainPhyloP119way.txt.gz 2020-04-30 21:44 1.0K strainPhyloP119way.sql 2020-04-30 21:44 1.8K strainPhyloP44way.txt.gz 2020-03-17 17:52 1.0K strainPhyloP44way.sql 2020-03-17 17:52 1.8K strainPhastConsElements119way.txt.gz 2020-04-30 21:42 12K strainPhastConsElements119way.sql 2020-04-30 21:42 1.6K strainPhastConsElements44way.txt.gz 2020-03-17 16:52 5.0K strainPhastConsElements44way.sql 2020-03-17 16:52 1.6K strainPhastCons119way.txt.gz 2020-04-30 21:43 862 strainPhastCons119way.sql 2020-04-30 21:43 1.8K strainPhastCons44way.txt.gz 2020-03-17 16:54 830 strainPhastCons44way.sql 2020-03-17 16:54 1.8K strainName119wayFrames.txt.gz 2020-04-30 21:46 219 strainName119wayFrames.sql 2020-04-30 21:46 1.8K strainName119way.txt.gz 2020-04-30 21:38 73 strainName119way.sql 2020-04-30 21:38 1.5K strainName44wayFrames.txt.gz 2020-03-17 17:47 218 strainName44wayFrames.sql 2020-03-17 17:47 1.8K strainName44way.txt.gz 2020-03-17 17:00 71 strainName44way.sql 2020-03-17 17:00 1.5K simpleRepeat.txt.gz 2020-01-29 12:05 86 simpleRepeat.sql 2020-01-29 12:05 1.9K seq.txt.gz 2020-04-09 16:18 3.1K seq.sql 2020-04-09 16:18 1.5K rnaStructRangan.txt.gz 2020-05-04 12:51 3.8K rnaStructRangan.sql 2020-05-04 12:51 1.5K rfam.txt.gz 2020-04-27 15:01 139 rfam.sql 2020-04-27 15:01 1.5K primers.txt.gz 2020-04-14 04:40 1.2K primers.sql 2020-04-14 04:40 2.1K ncbiGene.txt.gz 2020-01-29 13:54 238 ncbiGene.sql 2020-01-29 13:54 1.7K multiz7wayFrames.txt.gz 2020-05-13 11:30 204 multiz7wayFrames.sql 2020-05-13 11:30 1.7K multiz7way.txt.gz 2020-05-13 10:49 67 multiz7way.sql 2020-05-13 10:49 1.5K microdel.txt.gz 2020-05-20 06:54 1.0K microdel.sql 2020-05-20 06:54 1.6K mafSnpStrainName119way.txt.gz 2020-05-02 10:23 1.0M mafSnpStrainName119way.sql 2020-05-02 10:23 1.6K mafSnpStrainName44way.txt.gz 2020-05-02 10:13 858K mafSnpStrainName44way.sql 2020-05-02 10:13 1.6K mafSnp7way.txt.gz 2020-05-13 11:34 94K mafSnp7way.sql 2020-05-13 11:34 1.5K history.txt.gz 2020-01-30 11:00 421 history.sql 2020-01-30 11:00 1.6K hgFindSpec.txt.gz 2021-11-12 09:56 553 hgFindSpec.sql 2021-11-12 09:56 1.8K grp.txt.gz 2020-03-29 02:07 246 grp.sql 2020-03-29 02:07 1.3K gold.txt.gz 2020-01-29 11:07 60 gold.sql 2020-01-29 11:07 1.7K genscanSubopt.txt.gz 2020-01-29 13:25 140 genscanSubopt.sql 2020-01-29 13:25 1.6K genscan.txt.gz 2020-01-29 13:25 118 genscan.sql 2020-01-29 13:25 1.7K gc5BaseBw.txt.gz 2020-01-29 13:00 66 gc5BaseBw.sql 2020-01-29 13:00 1.3K gap.txt.gz 2020-01-29 11:07 28 gap.sql 2020-01-29 11:07 1.6K extFile.txt.gz 2020-06-21 08:31 173 extFile.sql 2020-06-21 08:31 1.4K cytoBandIdeo.txt.gz 2020-01-29 13:00 63 cytoBandIdeo.sql 2020-01-29 13:00 1.5K crisprDet.txt.gz 2020-03-27 07:50 243 crisprDet.sql 2020-03-27 07:50 2.1K cpgIslandExtUnmasked.txt.gz 2020-01-29 11:34 97 cpgIslandExtUnmasked.sql 2020-01-29 11:34 1.7K cpgIslandExt.txt.gz 2020-01-29 13:23 89 cpgIslandExt.sql 2020-01-29 13:23 1.7K chromInfo.txt.gz 2020-01-29 16:02 72 chromInfo.sql 2020-01-29 16:02 1.4K chromAlias.txt.gz 2020-01-29 11:54 79 chromAlias.sql 2020-01-29 11:54 1.4K bigFiles.txt.gz 2021-11-28 03:03 69 bigFiles.sql 2021-11-28 03:03 1.4K augustusGene.txt.gz 2020-01-29 13:32 164 augustusGene.sql 2020-01-29 13:32 1.9K