This directory contains reciprocal-best netted chains for xenTro9-nanPar1.

 - xenTro9.nanPar1.rbest.net.gz: xenTro9-referenced recip.best net to nanPar1.
 - xenTro9.nanPar1.rbest.chain.gz: chains extracted from the recip.best
   net.  These can be passed to the liftOver program to translate coords
   from xenTro9 to nanPar1 through the recip.best net.

 - nanPar1.xenTro9.rbest.net.gz: nanPar1-referenced recip.best net.
 - nanPar1.xenTro9.rbest.chain.gz: recip.best "liftOver" chains.

 - axtRBestNet/xenTro9.nanPar1.rbest.axt.gz reciprocal best alignments in
   AXT format

See also, description of AXT format::
    http://genome.ucsc.edu/goldenPath/help/axt.html
description of CHAIN format:
    http://genome.ucsc.edu/goldenPath/help/chain.html
description of NET format:
    http://genome.ucsc.edu/goldenPath/help/net.html

      Name                           Last modified      Size  Description
      Parent Directory                                    -   
      axtRBestNet/                   2017-03-31 05:05    -   
      md5sum.txt                     2017-03-31 00:06  256   
      nanPar1.xenTro9.rbest.chain.gz 2017-03-31 00:05  6.8M  
      nanPar1.xenTro9.rbest.net.gz   2017-03-31 00:05   12M  
      xenTro9.nanPar1.rbest.chain.gz 2017-03-31 00:05  6.8M  
      xenTro9.nanPar1.rbest.net.gz   2017-03-31 00:06   12M