[DIR] Parent Directory

This directory contains data generated by the Crawford/Duke lab as part of the ENCODE project. Further information is available in the Duke AffyExonArray track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:
  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Astrocy.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=Astrocy; treatment=None; replicate=1; expId=214; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Astrocy.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=Astrocy; treatment=None; replicate=2; expId=214; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Chorion.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=Chorion; treatment=None; replicate=1; expId=215; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Fibrobl.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=Fibrobl; treatment=None; replicate=1; expId=216; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Fibrobl.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=Fibrobl; treatment=None; replicate=2; expId=216; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Gm12878.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM12878; treatment=None; replicate=1; expId=217; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Gm12878.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM12878; treatment=None; replicate=2; expId=217; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep3Gm12878.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM12878; treatment=None; replicate=3; expId=217; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Gm12891.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM12891; treatment=None; replicate=1; expId=218; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Gm12891.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM12891; treatment=None; replicate=2; expId=218; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Gm12892.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM12892; treatment=None; replicate=1; expId=219; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Gm12892.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM12892; treatment=None; replicate=2; expId=219; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Gm18507.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM18507; treatment=None; replicate=1; expId=220; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Gm18507.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM18507; treatment=None; replicate=2; expId=220; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep3Gm18507.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM18507; treatment=None; replicate=3; expId=220; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Gm19238.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM19238; treatment=None; replicate=1; expId=221; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Gm19238.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM19238; treatment=None; replicate=2; expId=221; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Gm19239.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM19239; treatment=None; replicate=1; expId=222; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Gm19239.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM19239; treatment=None; replicate=2; expId=222; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Gm19240.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM19240; treatment=None; replicate=1; expId=223; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Gm19240.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=GM19240; treatment=None; replicate=2; expId=223; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Gliobla.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=Gliobla; treatment=None; replicate=1; expId=224; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Gliobla.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=Gliobla; treatment=None; replicate=2; expId=224; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Hmec.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HMEC; treatment=None; replicate=1; expId=225; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Hmec.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HMEC; treatment=None; replicate=2; expId=225; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Huvec.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HUVEC; treatment=None; replicate=1; expId=226; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Huvec.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HUVEC; treatment=None; replicate=2; expId=226; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Helas3Ifna4h.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HeLa-S3; treatment=IFNa4h; replicate=1; expId=228; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Helas3Ifna4h.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HeLa-S3; treatment=IFNa4h; replicate=2; expId=228; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Helas3Ifng4h.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HeLa-S3; treatment=IFNg4h; replicate=1; expId=229; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Helas3Ifng4h.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HeLa-S3; treatment=IFNg4h; replicate=2; expId=229; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Helas3.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HeLa-S3; treatment=None; replicate=1; expId=227; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Helas3.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HeLa-S3; treatment=None; replicate=2; expId=227; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep3Helas3.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HeLa-S3; treatment=None; replicate=3; expId=227; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Hepg2.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HepG2; treatment=None; replicate=1; expId=230; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Hepg2.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HepG2; treatment=None; replicate=2; expId=230; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep3Hepg2.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=HepG2; treatment=None; replicate=3; expId=230; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Lncap.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=LNCaP; treatment=None; replicate=1; expId=233; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Lncap.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=LNCaP; treatment=None; replicate=2; expId=233; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1LncapAndro.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=LNCaP; treatment=androgen; replicate=1; expId=234; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2LncapAndro.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=LNCaP; treatment=androgen; replicate=2; expId=234; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Mcf7.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=MCF-7; treatment=None; replicate=1; expId=235; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Mcf7Estro.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=MCF-7; treatment=estrogen; replicate=1; expId=236; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Mcf7Estro.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=MCF-7; treatment=estrogen; replicate=2; expId=236; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Mcf7Vehicle.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=MCF-7; treatment=vehicle; replicate=1; expId=237; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Mcf7Vehicle.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=MCF-7; treatment=vehicle; replicate=2; expId=237; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Medullo.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=Medullo; treatment=None; replicate=1; expId=238; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Medullo.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=Medullo; treatment=None; replicate=2; expId=238; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Nhek.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=NHEK; treatment=None; replicate=1; expId=239; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Nhek.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=NHEK; treatment=None; replicate=2; expId=239; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Osteobl.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=Osteobl; treatment=None; replicate=1; expId=240; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Osteobl.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=Osteobl; treatment=None; replicate=2; expId=240; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep1Progfib.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=ProgFib; treatment=None; replicate=1; expId=241; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
      2010-09-16wgEncodeDukeAffyExonArraySimpleSignalRep2Progfib.broadPeak.gz  11M  2009-12-16  dataType=AffyExonArray; cell=ProgFib; treatment=None; replicate=2; expId=241; subId=829; dataVersion=ENCODE Jan 2010 Freeze; grant=Crawford; lab=Duke; labVersion=1.0; type=broadPeak
    54 files