[DIR] Parent Directory

This directory contains data generated by the Gingeras/Gis lab as part of the ENCODE project. Further information is available in the Gis DnaPet track description.

Data is RESTRICTED FROM USE in publication until the restriction date noted for the given data file.

There are two files within this directory that contain information about the downloads:

  • files.txt which is a tab-separated file with the name and metadata for each download.
  • md5sum.txt which is a list of the md5sum output for each download.
    • RESTRICTED
    until    		  FileSizeSubmitted  Details
      2010-01-03wgEncodeGisDnaPetAlignmentsGm128781k.pairedTagAlign.gz  3.2G  2009-04-03  dataType=DnaPet; cell=GM12878; subId=253; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Alignments; type=bigBed; tableName=wgEncodeGisDnaPetAlignmentsGm128781k
      2010-01-03wgEncodeGisDnaPetAlignmentsGm128785k.pairedTagAlign.gz  1.7G  2009-04-03  dataType=DnaPet; cell=GM12878; subId=254; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Gis; fragSize=5k; view=Alignments; type=bigBed; tableName=wgEncodeGisDnaPetAlignmentsGm128785k
      2009-12-11wgEncodeGisDnaPetAlignmentsGm1287810k.pairedTagAlign.gz  4.0G  2009-03-11  dataType=DnaPet; cell=GM12878; subId=255; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Alignments; type=bigBed; tableName=wgEncodeGisDnaPetAlignmentsGm1287810k
      2010-08-17wgEncodeGisDnaPetFasta3pGm1287810k.csfasta.gz  4.8G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Fasta3p; type=csfasta
      2010-08-17wgEncodeGisDnaPetFasta5pGm1287810k.csfasta.gz  4.9G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Fasta5p; type=csfasta
      2010-08-17wgEncodeGisDnaPetQual3pGm1287810k.csqual.gz  9.9G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Qual3p; type=csqual
      2010-08-17wgEncodeGisDnaPetQual5pGm1287810k.csqual.gz  9.9G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Qual5p; type=csqual
      2010-08-17wgEncodeGisDnaPetFasta3pGm128781k.csfasta.gz  3.4G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Fasta3p; type=csfasta
      2010-08-17wgEncodeGisDnaPetFasta5pGm128781k.csfasta.gz  3.5G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Fasta5p; type=csfasta
      2010-08-17wgEncodeGisDnaPetQual3pGm128781k.csqual.gz  7.0G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Qual3p; type=csqual
      2010-08-17wgEncodeGisDnaPetQual5pGm128781k.csqual.gz  7.0G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Qual5p; type=csqual
      2010-08-17wgEncodeGisDnaPetFasta3pGm128785k.csfasta.gz  2.8G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=5k; view=Fasta3p; type=csfasta
      2010-08-17wgEncodeGisDnaPetFasta5pGm128785k.csfasta.gz  3.2G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=5k; view=Fasta5p; type=csfasta
      2010-08-17wgEncodeGisDnaPetQual3pGm128785k.csqual.gz  5.7G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=5k; view=Qual3p; type=csqual
      2010-08-17wgEncodeGisDnaPetQual5pGm128785k.csqual.gz  6.4G  2009-11-17  dataType=DnaPet; cell=GM12878; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=5k; view=Qual5p; type=csqual
      2011-01-05wgEncodeGisDnaPetAlignmentsK56220k.pairedTagAlign.gz  1.2G  2010-04-05  dataType=DnaPet; cell=K562; subId=1075; dataVersion=ENCODE June 2010 Freeze; grant=Gingeras; lab=Gis(Ruan); fragSize=20k; view=Alignments; type=bigBed; tableName=wgEncodeGisDnaPetAlignmentsK56220k
      2011-01-05wgEncodeGisDnaPetFasta3pK56220k.csfasta.gz  1.2G  2010-04-05  dataType=DnaPet; cell=K562; subId=1075; dataVersion=ENCODE June 2010 Freeze; grant=Gingeras; lab=Gis(Ruan); fragSize=20k; view=Fasta3p; type=csfasta
      2011-01-05wgEncodeGisDnaPetFasta5pK56220k.csfasta.gz  1.3G  2010-04-05  dataType=DnaPet; cell=K562; subId=1075; dataVersion=ENCODE June 2010 Freeze; grant=Gingeras; lab=Gis(Ruan); fragSize=20k; view=Fasta5p; type=csfasta
      2011-01-05wgEncodeGisDnaPetQual3pK56220k.csqual.gz  2.4G  2010-04-05  dataType=DnaPet; cell=K562; subId=1075; dataVersion=ENCODE June 2010 Freeze; grant=Gingeras; lab=Gis(Ruan); fragSize=20k; view=Qual3p; type=csqual
      2011-01-05wgEncodeGisDnaPetQual5pK56220k.csqual.gz  2.5G  2010-04-05  dataType=DnaPet; cell=K562; subId=1075; dataVersion=ENCODE June 2010 Freeze; grant=Gingeras; lab=Gis(Ruan); fragSize=20k; view=Qual5p; type=csqual
      2009-12-11wgEncodeGisDnaPetAlignmentsK5621k.pairedTagAlign.gz  1.8G  2009-03-11  dataType=DnaPet; cell=K562; subId=256; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Alignments; type=bigBed; tableName=wgEncodeGisDnaPetAlignmentsK5621k
      2009-12-11wgEncodeGisDnaPetAlignmentsK56210k.pairedTagAlign.gz  3.4G  2009-03-11  dataType=DnaPet; cell=K562; subId=257; dataVersion=ENCODE Feb 2009 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Alignments; type=bigBed; tableName=wgEncodeGisDnaPetAlignmentsK56210k
      2010-08-17wgEncodeGisDnaPetFasta3pK56210k.csfasta.gz  2.2G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Fasta3p; type=csfasta
      2010-08-17wgEncodeGisDnaPetFasta5pK56210k.csfasta.gz  2.2G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Fasta5p; type=csfasta
      2010-08-17wgEncodeGisDnaPetFastqRd1K56210k.fastq.gz  2.2G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=FastqRd1; type=fastq
      2010-08-17wgEncodeGisDnaPetFastqRd2K56210k.fastq.gz  2.3G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=FastqRd2; type=fastq
      2010-08-17wgEncodeGisDnaPetQual3pK56210k.csqual.gz  4.5G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Qual3p; type=csqual
      2010-08-17wgEncodeGisDnaPetQual5pK56210k.csqual.gz  4.4G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=10k; view=Qual5p; type=csqual
      2010-08-17wgEncodeGisDnaPetFasta3pK5621k.csfasta.gz  1.3G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Fasta3p; type=csfasta
      2010-08-17wgEncodeGisDnaPetFasta5pK5621k.csfasta.gz  1.3G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Fasta5p; type=csfasta
      2010-08-17wgEncodeGisDnaPetFastqRd1K5621k.fastq.gz  1.9G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=FastqRd1; type=fastq
      2010-08-17wgEncodeGisDnaPetFastqRd2K5621k.fastq.gz  1.6G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=FastqRd2; type=fastq
      2010-08-17wgEncodeGisDnaPetQual3pK5621k.csqual.gz  2.5G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Qual3p; type=csqual
      2010-08-17wgEncodeGisDnaPetQual5pK5621k.csqual.gz  2.5G  2009-11-17  dataType=DnaPet; cell=K562; subId=761; dataVersion=ENCODE Jan 2010 Freeze; grant=Gingeras; lab=Gis; fragSize=1k; view=Qual5p; type=csqual
    34 files